Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 111 of 113
Found at i:21667206 original size:30 final size:30
Alignment explanation
Indices: 21667172--21667266 Score: 113
Period size: 30 Copynumber: 3.2 Consensus size: 30
21667162 GATAATGGTC
*
21667172 TATTTAGATACAAATTAAAAATTAAGAATT
1 TATTTAGATACAAATTAAAAATTAAGAGTT
* *
21667202 TATTT-GTATATAAATTAAAAATTAAGAGCT
1 TATTTAG-ATACAAATTAAAAATTAAGAGTT
* *
21667232 TATTTA-ATTACAAATTAAAGATTGAGAGTT
1 TATTTAGA-TACAAATTAAAAATTAAGAGTT
21667262 TATTT
1 TATTT
21667267 TTGTGTAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
29 2 0.04
30 53 0.96
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.41
Consensus pattern (30 bp):
TATTTAGATACAAATTAAAAATTAAGAGTT
Found at i:21670336 original size:21 final size:20
Alignment explanation
Indices: 21670298--21670339 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
21670288 AAACTATTAT
* *
21670298 AAAATTTTAATAACTAATAA
1 AAAATTTTAAAAAATAATAA
21670318 AAAATTATTAAAAAATAATAA
1 AAAATT-TTAAAAAATAATAA
21670339 A
1 A
21670340 TTTAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATTTTAAAAAATAATAA
Found at i:21671103 original size:13 final size:13
Alignment explanation
Indices: 21671060--21671104 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
21671050 AAGACTTCCA
21671060 GAAAAACTTTTTT
1 GAAAAACTTTTTT
**
21671073 GAAAATGTTTTTT
1 GAAAAACTTTTTT
* *
21671086 CAAAAACTTATTT
1 GAAAAACTTTTTT
21671099 GAAAAA
1 GAAAAA
21671105 TATAATTAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (13 bp):
GAAAAACTTTTTT
Found at i:21678120 original size:13 final size:14
Alignment explanation
Indices: 21678091--21678124 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21678081 TTCGAATTTG
*
21678091 ATTTGATTTTATAA
1 ATTTGATATTATAA
21678105 ATTTGATATT-TAA
1 ATTTGATATTATAA
21678118 ATTTGAT
1 ATTTGAT
21678125 TAGATATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (14 bp):
ATTTGATATTATAA
Found at i:21682541 original size:53 final size:53
Alignment explanation
Indices: 21682474--21682580 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
21682464 TGTTATGGGC
*
21682474 CACTATTGCAATGGCAGATTGTCACAGCATCTTATTGTGACTGTTGCATGCCA
1 CACTATTGCAATGGCAGATTGTCACAGCATCTTATTGTGACTGTTACATGCCA
* *
21682527 CACTATTGCAATGGCAGATTTTCACATCATCTTATTGTGACTGTTACATGCCA
1 CACTATTGCAATGGCAGATTGTCACAGCATCTTATTGTGACTGTTACATGCCA
21682580 C
1 C
21682581 TAAGTGTGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (53 bp):
CACTATTGCAATGGCAGATTGTCACAGCATCTTATTGTGACTGTTACATGCCA
Found at i:21684230 original size:14 final size:15
Alignment explanation
Indices: 21684211--21684246 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
21684201 TTTCAGTGTA
21684211 TTCAAAAT-CAAAAT
1 TTCAAAATACAAAAT
21684225 TTCAAAATACCAAAAT
1 TTCAAAATA-CAAAAT
21684241 TTCAAA
1 TTCAAA
21684247 TTGCAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.40
16 12 0.60
ACGTcount: A:0.56, C:0.17, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCAAAATACAAAAT
Found at i:21685428 original size:32 final size:31
Alignment explanation
Indices: 21685386--21685446 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
21685376 AACTAACCTG
*
21685386 TTTTCCATCTTTCCAGTTTTCTCCTCTCCCAA
1 TTTTCCATCTTTCCA-TTTTCTACTCTCCCAA
*
21685418 TTTTCTATCTTTCCATTTTCTACTCTCCC
1 TTTTCCATCTTTCCATTTTCTACTCTCCC
21685447 TACCAATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.11, C:0.36, G:0.02, T:0.51
Consensus pattern (31 bp):
TTTTCCATCTTTCCATTTTCTACTCTCCCAA
Found at i:21691840 original size:19 final size:19
Alignment explanation
Indices: 21691813--21691849 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
21691803 AAGATATTAA
21691813 AATTAAAATATCATAAATT
1 AATTAAAATATCATAAATT
* *
21691832 AATTTAAATATTATAAAT
1 AATTAAAATATCATAAAT
21691850 AAATATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTAAAATATCATAAATT
Found at i:21695126 original size:41 final size:41
Alignment explanation
Indices: 21695079--21695157 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 41
21695069 TATGAGATTA
21695079 TTATTTTAATAATAAATAATAACAT-ATATAATAATATTTTG
1 TTATTTTAATAATAAATAATAA-ATAATATAATAATATTTTG
* **
21695120 TTATTTTAATAATTAATGTTAAATAATATAATAATATT
1 TTATTTTAATAATAAATAATAAATAATATAATAATATT
21695158 ATTTTCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 2 0.06
41 32 0.94
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (41 bp):
TTATTTTAATAATAAATAATAAATAATATAATAATATTTTG
Found at i:21697693 original size:34 final size:34
Alignment explanation
Indices: 21697645--21697710 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
21697635 TTGGATATTT
*
21697645 ATTTTTGAAAAACCTTAAAAATTT-TCAAAAATAC
1 ATTTATGAAAAACCTT-AAAATTTCTCAAAAATAC
* *
21697679 ATTTATGATAAACCTTAAAGTTTCTCAAAAAT
1 ATTTATGAAAAACCTTAAAATTTCTCAAAAAT
21697711 TAAAATCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 6 0.21
34 22 0.79
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (34 bp):
ATTTATGAAAAACCTTAAAATTTCTCAAAAATAC
Found at i:21705785 original size:20 final size:22
Alignment explanation
Indices: 21705742--21705785 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
21705732 AATATTACAA
* *
21705742 ATATTTTTTATTTATAAAATTC
1 ATATTATTTATTTATAAAAGTC
21705764 ATATTATTTA-TTA-AAAAGTC
1 ATATTATTTATTTATAAAAGTC
21705784 AT
1 AT
21705786 GAAAGTACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 9 0.45
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (22 bp):
ATATTATTTATTTATAAAAGTC
Found at i:21706095 original size:31 final size:31
Alignment explanation
Indices: 21706054--21706164 Score: 88
Period size: 31 Copynumber: 3.7 Consensus size: 31
21706044 AATAAAATAT
* *
21706054 TAAAATTTATATAGTTAT-A-TTATATTTTATA
1 TAAAAATTATATA-TTATAATTTATA-TTGATA
21706085 TAAAAATTATATATTATAATTTATATTGATA
1 TAAAAATTATATATTATAATTTATATTGATA
* * * *
21706116 TAAAAA-TATA-ATTTTATTTTTTATT-TTA
1 TAAAAATTATATATTATAATTTATATTGATA
* * *
21706144 TTAAATTTATATATAATAATT
1 TAAAAATTATATATTATAATT
21706165 ATTAAAATTT
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
28 6 0.09
29 16 0.25
30 14 0.22
31 24 0.37
32 5 0.08
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (31 bp):
TAAAAATTATATATTATAATTTATATTGATA
Found at i:21712555 original size:12 final size:12
Alignment explanation
Indices: 21712538--21712624 Score: 51
Period size: 11 Copynumber: 7.4 Consensus size: 12
21712528 TTATGTATTT
21712538 ATATTATAT-AA
1 ATATTATATAAA
21712549 A-A-TAT-TAAA
1 ATATTATATAAA
*
21712558 AT-TTATATAAT
1 ATATTATATAAA
*
21712569 ATTTTATATAAA
1 ATATTATATAAA
21712581 A-ATTATATATTAA
1 ATATTATATA--AA
* *
21712594 ATTTTAAATTAAA
1 ATATTATA-TAAA
*
21712607 ATGATAATATAAA
1 AT-ATTATATAAA
21712620 ATATT
1 ATATT
21712625 TTTATTATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 19
0.67 0.11 0.22
Matches are distributed among these distances:
8 1 0.02
9 6 0.11
10 4 0.07
11 13 0.23
12 11 0.19
13 13 0.23
14 7 0.12
15 2 0.04
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (12 bp):
ATATTATATAAA
Found at i:21712597 original size:25 final size:24
Alignment explanation
Indices: 21712550--21712608 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
21712540 ATTATATAAA
21712550 ATATTAAAATTTATATAATATTTT
1 ATATTAAAATTTATATAATATTTT
*
21712574 ATATAAAAATTATATATTAA-ATTTT
1 ATATTAAAATT-TATA-TAATATTTT
*
21712599 AAATTAAAAT
1 ATATTAAAAT
21712609 GATAATATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 10 0.33
25 17 0.57
26 3 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
ATATTAAAATTTATATAATATTTT
Found at i:21712616 original size:26 final size:25
Alignment explanation
Indices: 21712561--21712621 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
21712551 TATTAAAATT
* * *
21712561 TATATAATATTTTATATAAAAATTA
1 TATATAAAATTTTAAATAAAAATGA
* *
21712586 TATATTAAATTTTAAATTAAAATGA
1 TATATAAAATTTTAAATAAAAATGA
21712611 TAATATAAAAT
1 T-ATATAAAAT
21712622 ATTTTTATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
TATATAAAATTTTAAATAAAAATGA
Found at i:21713897 original size:2 final size:2
Alignment explanation
Indices: 21713890--21713917 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21713880 CACGCACATG
21713890 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21713918 GGCAACTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21715392 original size:21 final size:21
Alignment explanation
Indices: 21715345--21715405 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
21715335 TTATAATTTG
* *
21715345 ATTTTAATCAAAATAATTAAA
1 ATTTTAATTAAAATAAATAAA
21715366 ATTTTAATTAAAATATAATAAA
1 ATTTTAATTAAAATA-AATAAA
*
21715388 ATTTAAATATAAAATAAA
1 ATTTTAAT-TAAAATAAA
21715406 AATATAGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.40
22 14 0.40
23 7 0.20
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTTTAATTAAAATAAATAAA
Found at i:21715400 original size:23 final size:23
Alignment explanation
Indices: 21715357--21715403 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
21715347 TTTAATCAAA
*
21715357 ATAATTAAAATTTTAATTAAAAT
1 ATAATTAAAATTTAAATTAAAAT
21715380 ATAA-TAAAATTTAAATATAAAAT
1 ATAATTAAAATTTAAAT-TAAAAT
21715403 A
1 A
21715404 AAAATATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
ATAATTAAAATTTAAATTAAAAT
Found at i:21715405 original size:18 final size:17
Alignment explanation
Indices: 21715373--21715406 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21715363 AAAATTTTAA
*
21715373 TTAAAATATAATAAAAT
1 TTAAAATAAAATAAAAT
21715390 TTAAATATAAAATAAAA
1 TTAAA-ATAAAATAAAA
21715407 ATATAGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TTAAAATAAAATAAAAT
Found at i:21715476 original size:13 final size:14
Alignment explanation
Indices: 21715460--21715492 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
21715450 AATATTTTAG
21715460 TATTTAAAT-ATTT
1 TATTTAAATAATTT
21715473 TA-TTAAATAATTT
1 TATTTAAATAATTT
21715486 TATTTAA
1 TATTTAA
21715493 TTTATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 8 0.44
14 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TATTTAAATAATTT
Found at i:21716725 original size:36 final size:37
Alignment explanation
Indices: 21716654--21716739 Score: 97
Period size: 36 Copynumber: 2.3 Consensus size: 37
21716644 TATGAGTTTG
**
21716654 ATTTAAAATTTA-ATTCGAATTTAATTAAATTTTAAA-
1 ATTT-AAATTTATATTCGAATTTAATTAAAAATTAAAT
*
21716690 ATTTAAATTTATATTC-AATTTGATATAAAAATTAAATT
1 ATTTAAATTTATATTCGAATTTAAT-TAAAAATTAAA-T
21716728 ATTTAAATTTAT
1 ATTTAAATTTAT
21716740 TCAAATAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
35 14 0.33
36 17 0.40
38 12 0.28
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (37 bp):
ATTTAAATTTATATTCGAATTTAATTAAAAATTAAAT
Found at i:21716852 original size:19 final size:18
Alignment explanation
Indices: 21716828--21716889 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
21716818 TATATAAAGA
21716828 TAAAATAAAAAATTTTAAT
1 TAAAATAAAAAATTTT-AT
* *
21716847 TAAAATAATAAAAATATAT
1 TAAAATAA-AAAATTTTAT
*
21716866 TAAAATTTAAAAATTTTGAT
1 TAAAA-TAAAAAATTTT-AT
21716886 TAAA
1 TAAA
21716890 TTTATAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 21 0.60
20 14 0.40
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
TAAAATAAAAAATTTTAT
Found at i:21716934 original size:32 final size:32
Alignment explanation
Indices: 21716898--21716961 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
21716888 AATTTATAAA
*
21716898 TAACTCTAATTAA-ATATTAAAATATTTAAATT
1 TAACTC-AATTAATAAATTAAAATATTTAAATT
* * *
21716930 TAACTCATTTAATAAATTAAATTTTTTAAATT
1 TAACTCAATTAATAAATTAAAATATTTAAATT
21716962 CGAGTTTGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 5 0.19
32 22 0.81
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (32 bp):
TAACTCAATTAATAAATTAAAATATTTAAATT
Found at i:21717426 original size:7 final size:7
Alignment explanation
Indices: 21717414--21717438 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
21717404 AAAATTAAAA
21717414 TTTTTTG
1 TTTTTTG
21717421 TTTTTTG
1 TTTTTTG
21717428 TTTTTTG
1 TTTTTTG
21717435 TTTT
1 TTTT
21717439 AATTTGTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:21723206 original size:119 final size:119
Alignment explanation
Indices: 21722995--21723234 Score: 419
Period size: 119 Copynumber: 2.0 Consensus size: 119
21722985 TGTGAATGAT
* *
21722995 ATAAACCAGGTCTTATCTGAAAATTTAAGTGAAAGGGCCCCTTTAATATTTTGGCGAATAAAATA
1 ATAAACCAGGTCTTATCTGAAAATTTAAGTGAAAGGGCCCCATTAATATTTTGGCCAATAAAATA
21723060 AGTATGGTAGATGCATACCTATCTCTAACAAAGTAGCATGCTCCAATTGGTAAC
66 AGTATGGTAGATGCATACCTATCTCTAACAAAGTAGCATGCTCCAATTGGTAAC
* *
21723114 ATAAACCGGGTCTTATCTGAAAATTTTAAGTGTAAGGGCCCCATTAATATTTTGGCCAAT-AAAT
1 ATAAACCAGGTCTTATCTGAAAA-TTTAAGTGAAAGGGCCCCATTAATATTTTGGCCAATAAAAT
*
21723178 AAGTATGTTAGATGCATACCTATCTCTAACAAAGTAGCATGCTCCAATTGGTAAC
65 AAGTATGGTAGATGCATACCTATCTCTAACAAAGTAGCATGCTCCAATTGGTAAC
21723233 AT
1 AT
21723235 TGGTCTCTCT
Statistics
Matches: 115, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
119 82 0.71
120 33 0.29
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (119 bp):
ATAAACCAGGTCTTATCTGAAAATTTAAGTGAAAGGGCCCCATTAATATTTTGGCCAATAAAATA
AGTATGGTAGATGCATACCTATCTCTAACAAAGTAGCATGCTCCAATTGGTAAC
Found at i:21728290 original size:20 final size:21
Alignment explanation
Indices: 21728253--21728293 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
21728243 ATTCTTTTTG
21728253 GTTTTCTCCCCTATTTCTTAT
1 GTTTTCTCCCCTATTTCTTAT
21728274 GTTTTC-CCCCTCA-TTCTTAT
1 GTTTTCTCCCCT-ATTTCTTAT
21728294 CTGCTTCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.10, C:0.32, G:0.05, T:0.54
Consensus pattern (21 bp):
GTTTTCTCCCCTATTTCTTAT
Found at i:21731190 original size:28 final size:29
Alignment explanation
Indices: 21731150--21731208 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
21731140 ACAAAAAATA
* *
21731150 TATAATTATATAA-TAATGAAAATATTTT
1 TATAATTATATAACGAATAAAAATATTTT
*
21731178 TATAATTCA-ATAACGATTAAAAATATTTT
1 TATAATT-ATATAACGAATAAAAATATTTT
21731207 TA
1 TA
21731209 ATCAAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (29 bp):
TATAATTATATAACGAATAAAAATATTTT
Found at i:21741007 original size:28 final size:28
Alignment explanation
Indices: 21740890--21741007 Score: 66
Period size: 28 Copynumber: 4.2 Consensus size: 28
21740880 TTAAATCTTA
*
21740890 TAATTTATAAATATTAAGTTATTTATTT
1 TAATATATAAATATTAAGTTATTTATTT
* * * *
21740918 TAATCAAATAGACTTGTTAAGTTA-TT-TTC
1 TAAT-ATATA-A-ATATTAAGTTATTTATTT
* **
21740947 AAATA-ATGAAAT-TTAA-AAATTTATAATT
1 TAATATAT-AAATATTAAGTTATTTAT--TT
*
21740975 GAATATATAAATATTAAGTTATTTATTT
1 TAATATATAAATATTAAGTTATTTATTT
21741003 TAATA
1 TAATA
21741008 AAAAATACTT
Statistics
Matches: 65, Mismatches: 14, Indels: 22
0.64 0.14 0.22
Matches are distributed among these distances:
24 1 0.02
25 6 0.09
26 2 0.03
27 3 0.05
28 21 0.32
29 14 0.22
30 9 0.14
31 9 0.14
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (28 bp):
TAATATATAAATATTAAGTTATTTATTT
Found at i:21741038 original size:85 final size:85
Alignment explanation
Indices: 21740895--21741050 Score: 285
Period size: 85 Copynumber: 1.8 Consensus size: 85
21740885 TCTTATAATT
* *
21740895 TATAAATATTAAGTTATTTATTTTAATCAAATAGACTTGTTAAGTTATTTTCAAATAATGAAATT
1 TATAAATATTAAGTTATTTATTTTAATAAAAAAGACTTGTTAAGTTATTTTCAAATAATGAAATT
21740960 TAAAAATTTATAATTGAATA
66 TAAAAATTTATAATTGAATA
*
21740980 TATAAATATTAAGTTATTTATTTTAATAAAAAATACTTGTTAAGTTATTTTCAAATAATGAAATT
1 TATAAATATTAAGTTATTTATTTTAATAAAAAAGACTTGTTAAGTTATTTTCAAATAATGAAATT
21741045 TAAAAA
66 TAAAAA
21741051 AAATATTTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 68 1.00
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.44
Consensus pattern (85 bp):
TATAAATATTAAGTTATTTATTTTAATAAAAAAGACTTGTTAAGTTATTTTCAAATAATGAAATT
TAAAAATTTATAATTGAATA
Found at i:21745694 original size:19 final size:20
Alignment explanation
Indices: 21745657--21745696 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
21745647 GAAAGAAACC
21745657 ATTTTTTTATTATTATTTATT
1 ATTTTTTTA-TATTATTTATT
*
21745678 ATTTTTTTA-ATTGTTTATT
1 ATTTTTTTATATTATTTATT
21745697 CCCTTTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (20 bp):
ATTTTTTTATATTATTTATT
Found at i:21747229 original size:25 final size:25
Alignment explanation
Indices: 21747200--21747249 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
21747190 GGAAATCAAG
21747200 CTGCACTAATGTAGAAGAATCAGAT
1 CTGCACTAATGTAGAAGAATCAGAT
*
21747225 CTGCACTAATGTAGGAGAATCAGAT
1 CTGCACTAATGTAGAAGAATCAGAT
21747250 TTCTACACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (25 bp):
CTGCACTAATGTAGAAGAATCAGAT
Found at i:21751427 original size:11 final size:11
Alignment explanation
Indices: 21751411--21751447 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
21751401 CCATGCTACT
21751411 CTAAAATATGA
1 CTAAAATATGA
21751422 CTAAAATATGA
1 CTAAAATATGA
21751433 CTAAAATATG-
1 CTAAAATATGA
21751443 CTAAA
1 CTAAA
21751448 TAGAAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 5 0.19
11 21 0.81
ACGTcount: A:0.54, C:0.11, G:0.08, T:0.27
Consensus pattern (11 bp):
CTAAAATATGA
Found at i:21761074 original size:34 final size:35
Alignment explanation
Indices: 21761036--21761138 Score: 97
Period size: 34 Copynumber: 2.9 Consensus size: 35
21761026 TTTCAAAAAA
21761036 TATTAATATAATTATTAAATTATTAAAAATTAT-T
1 TATTAATATAATTATTAAATTATTAAAAATTATAT
* * **
21761070 TATTATTAAAATTATTAATATTAAAAAATAATTATAT
1 TATTAATATAATTATTAA-ATTATTAAA-AATTATAT
*
21761107 T-TTAATAATAA-TATTTAA-TATTAAAATATTAT
1 TATTAAT-ATAATTATTAAATTATTAAAA-ATTAT
21761139 GTTAATATAA
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
33 1 0.02
34 26 0.47
35 8 0.15
36 15 0.27
37 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (35 bp):
TATTAATATAATTATTAAATTATTAAAAATTATAT
Found at i:21761093 original size:15 final size:15
Alignment explanation
Indices: 21761045--21761095 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 15
21761035 ATATTAATAT
21761045 AATTATTAAATTATTAAA
1 AATTATT-AA-TATT-AA
*
21761063 AATTATTTATTATTAA
1 AATTA-TTAATATTAA
21761079 AATTATTAATATTAA
1 AATTATTAATATTAA
21761094 AA
1 AA
21761096 AATAATTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 11 0.37
16 7 0.23
17 4 0.13
18 6 0.20
19 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTATTAATATTAA
Found at i:21761240 original size:38 final size:34
Alignment explanation
Indices: 21761198--21761270 Score: 92
Period size: 34 Copynumber: 2.0 Consensus size: 34
21761188 TTTATTAGTA
* *
21761198 TATTAATATATTAATATATATTATAATGTAATATTATT
1 TATTAATATAAT-AT-TAT-TTATAA-GTAAAATTATT
21761236 TATTAATATAATATTATTTATAAGTAAAATTATT
1 TATTAATATAATATTATTTATAAGTAAAATTATT
21761270 T
1 T
21761271 TCAAAAGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 11 0.33
35 6 0.18
36 3 0.09
37 2 0.06
38 11 0.33
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (34 bp):
TATTAATATAATATTATTTATAAGTAAAATTATT
Found at i:21761245 original size:23 final size:22
Alignment explanation
Indices: 21761182--21761247 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
21761172 ATTACTTTTT
*
21761182 ATATTATTTATTAGTAT-ATTA
1 ATATTATTTATTAATATAATTA
*
21761203 ATA-TATTAATATATATTATAATGTA
1 ATATTATT--TAT-TAATATAAT-TA
21761228 ATATTATTTATTAATATAAT
1 ATATTATTTATTAATATAAT
21761248 ATTATTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 4 0.11
21 3 0.08
22 3 0.08
23 13 0.35
24 5 0.14
25 5 0.14
26 4 0.11
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (22 bp):
ATATTATTTATTAATATAATTA
Found at i:21761247 original size:18 final size:18
Alignment explanation
Indices: 21761198--21761256 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
21761188 TTTATTAGTA
*
21761198 TATTAATATATTAATATATAT
1 TATTAATATAAT-AT-TAT-T
*
21761219 TA-TAATGTAATATTATT
1 TATTAATATAATATTATT
21761236 TATTAATATAATATTATT
1 TATTAATATAATATTATT
21761254 TAT
1 TAT
21761257 AAGTAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.09
18 20 0.59
19 2 0.06
20 7 0.21
21 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TATTAATATAATATTATT
Found at i:21761731 original size:23 final size:21
Alignment explanation
Indices: 21761680--21761737 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 21
21761670 AATATAAAAA
*
21761680 TATAAAATATATATATTTAATTT
1 TATAAAAT-T-TATATATAATTT
21761703 TATAAAATTTATATATAATTAT
1 TATAAAATTTATATATAATT-T
21761725 TATTAAAAATTTA
1 TA-T-AAAATTTA
21761738 AATCATATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 10 0.32
22 4 0.13
23 9 0.29
24 8 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TATAAAATTTATATATAATTT
Found at i:21762065 original size:2 final size:2
Alignment explanation
Indices: 21762058--21762097 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
21762048 ATTTTGATTT
21762058 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21762098 CAGATTATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21767692 original size:27 final size:26
Alignment explanation
Indices: 21767643--21767696 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
21767633 CGTATACACG
21767643 ATTATGATAAAATAAAATAAAATAAT
1 ATTATGATAAAATAAAATAAAATAAT
* * *
21767669 ATTATGAATATAATTAAATTAAATAAT
1 ATTATG-ATAAAATAAAATAAAATAAT
21767696 A
1 A
21767697 ATATTTTATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (26 bp):
ATTATGATAAAATAAAATAAAATAAT
Found at i:21767935 original size:57 final size:57
Alignment explanation
Indices: 21767847--21767960 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
21767837 TTGTTTTAAA
21767847 AATATTTTCGTTTCACTTTAAGAGGATTGATCATTTTATGTGGAAAAGAAAATTATG
1 AATATTTTCGTTTCACTTTAAGAGGATTGATCATTTTATGTGGAAAAGAAAATTATG
* *
21767904 AATATTTTCTTTTCACTTTAGGAGGATTGATCATTTTATGTGGAAAAGAAAATTATG
1 AATATTTTCGTTTCACTTTAAGAGGATTGATCATTTTATGTGGAAAAGAAAATTATG
21767961 GTTTTTTCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (57 bp):
AATATTTTCGTTTCACTTTAAGAGGATTGATCATTTTATGTGGAAAAGAAAATTATG
Found at i:21775411 original size:18 final size:18
Alignment explanation
Indices: 21775388--21775422 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21775378 ACTGATTTTG
*
21775388 ATAAAATTAAAAATAATA
1 ATAAAAGTAAAAATAATA
*
21775406 ATAAAAGTAAAATTAAT
1 ATAAAAGTAAAAATAAT
21775423 TATTATAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
ATAAAAGTAAAAATAATA
Found at i:21775710 original size:33 final size:33
Alignment explanation
Indices: 21775668--21775736 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
21775658 TATTAATTTA
21775668 TTATATAATAATAAATTTT-A-TTTATTAATAAAG
1 TTATATAATAATAAATTTTGATTTTA-TAAT-AAG
*
21775701 TTATATAATAATTAATTTTGATTTTATAATAAG
1 TTATATAATAATAAATTTTGATTTTATAATAAG
21775734 TTA
1 TTA
21775737 ACAAAATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
33 24 0.73
34 5 0.15
35 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (33 bp):
TTATATAATAATAAATTTTGATTTTATAATAAG
Found at i:21778996 original size:89 final size:88
Alignment explanation
Indices: 21778817--21779020 Score: 229
Period size: 88 Copynumber: 2.3 Consensus size: 88
21778807 GTTTATGTTG
* * ** * **
21778817 AAAATATATTAT-AAGAAATTTTT-TTTTCAAAATTTTATAGTTTTAACAAATGCTACTTTTAAA
1 AAAATATATTATGAAAAAATTTTTATTTTTAAAATTCAATAATTTTAACAAAAACTACTTTTAAA
* * *
21778880 GTTTAAAAATATAATCTTTGTTT
66 GATTAAAAATATAATCTTTATTA
** *
21778903 AAAATATATTATGAAAAAATTTTTATTTTTTTAATTCAATAATTTTAACAAAAACTACATTTTTA
1 AAAATATATTATGAAAAAATTTTTATTTTTAAAATTCAATAATTTTAACAAAAACTAC-TTTTAA
21778968 AGATTAAAAATA-AAGT-TTTCATTA
65 AGATTAAAAATATAA-TCTTT-ATTA
21778992 AAAATATATTATGAAAAAA-TTTTATTTTT
1 AAAATATATTATGAAAAAATTTTTATTTTT
21779021 CTTTGGTTTT
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
86 12 0.12
87 10 0.10
88 40 0.40
89 38 0.38
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (88 bp):
AAAATATATTATGAAAAAATTTTTATTTTTAAAATTCAATAATTTTAACAAAAACTACTTTTAAA
GATTAAAAATATAATCTTTATTA
Found at i:21779298 original size:12 final size:12
Alignment explanation
Indices: 21779258--21779307 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
21779248 ATTAAAATGT
21779258 ATTAAATAAATA
1 ATTAAATAAATA
* *
21779270 A-TAACT-GATA
1 ATTAAATAAATA
*
21779280 TATTAAATTAATA
1 -ATTAAATAAATA
21779293 ATTAAATAAATA
1 ATTAAATAAATA
21779305 ATT
1 ATT
21779308 TACATGTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 3 0.10
11 5 0.17
12 19 0.63
13 3 0.10
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (12 bp):
ATTAAATAAATA
Found at i:21790573 original size:18 final size:21
Alignment explanation
Indices: 21790534--21790582 Score: 77
Period size: 18 Copynumber: 2.5 Consensus size: 21
21790524 AATAATAATT
21790534 TTTAATTAAAATAATAAAAAA
1 TTTAATTAAAATAATAAAAAA
21790555 TTT-ATTAAAAT-AT-AAAAA
1 TTTAATTAAAATAATAAAAAA
21790573 TTTAATTAAA
1 TTTAATTAAA
21790583 TTTACAAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.30
19 8 0.30
20 8 0.30
21 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTAATTAAAATAATAAAAAA
Found at i:21794045 original size:2 final size:2
Alignment explanation
Indices: 21794038--21794063 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21794028 AAGGTGGTTT
21794038 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
21794064 CACACACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21806057 original size:7 final size:7
Alignment explanation
Indices: 21806045--21806082 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
21806035 CTCATTCTAT
21806045 TCTCTGC
1 TCTCTGC
21806052 TCTCTGC
1 TCTCTGC
21806059 TCTCTGC
1 TCTCTGC
21806066 TCTCTGC
1 TCTCTGC
*
21806073 TTTCTGC
1 TCTCTGC
21806080 TCT
1 TCT
21806083 GCCTCTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.00, C:0.39, G:0.13, T:0.47
Consensus pattern (7 bp):
TCTCTGC
Found at i:21813290 original size:4 final size:4
Alignment explanation
Indices: 21813281--21813312 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
21813271 GATAATTTGG
21813281 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
21813313 TGTATGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:21813439 original size:21 final size:21
Alignment explanation
Indices: 21813410--21813453 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
21813400 AGTTTGTTGC
* *
21813410 ATCTGAATGCATTTGATTTGT
1 ATCTCAATGCATTTCATTTGT
21813431 ATCTCAATGCATTTCATTTGT
1 ATCTCAATGCATTTCATTTGT
21813452 AT
1 AT
21813454 GTTGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.48
Consensus pattern (21 bp):
ATCTCAATGCATTTCATTTGT
Found at i:21822494 original size:18 final size:20
Alignment explanation
Indices: 21822453--21822494 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
21822443 ATTAGAAGTT
* *
21822453 CAAAATATTTATCATTGTTT
1 CAAAATATTTAACATTGTTC
21822473 CAAAAT-TTTAACATT-TTC
1 CAAAATATTTAACATTGTTC
21822491 CAAA
1 CAAA
21822495 TTTGCTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 8 0.40
20 6 0.30
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.43
Consensus pattern (20 bp):
CAAAATATTTAACATTGTTC
Found at i:21829054 original size:139 final size:139
Alignment explanation
Indices: 21828804--21829082 Score: 540
Period size: 139 Copynumber: 2.0 Consensus size: 139
21828794 GTGAGTAAAG
*
21828804 CACAGTTAATACCGCTCTATGGTTCTTTTTATATACCTCTGATTTCCCTTTTCACAACATGAAAA
1 CACAGTTAATACCGCTCTAAGGTTCTTTTTATATACCTCTGATTTCCCTTTTCACAACATGAAAA
*
21828869 TGTTGATGTTCTCTCTAGCCACCACTCCATTCATGAACAGCTTCCCCGCACTGTCCATCTTCGTA
66 TGTTGATGTTCTCTCTAACCACCACTCCATTCATGAACAGCTTCCCCGCACTGTCCATCTTCGTA
21828934 TATGACCTC
131 TATGACCTC
21828943 CACAGTTAATACCGCTCTAAGGTTCTTTTTATATACCTCTGATTTCCCTTTTCACAACATGAAAA
1 CACAGTTAATACCGCTCTAAGGTTCTTTTTATATACCTCTGATTTCCCTTTTCACAACATGAAAA
21829008 TGTTGATGTTCTCTCTAACCACCACTCCATTCATGAACAGCTTCCCCGCACTGTCCATCTTCGTA
66 TGTTGATGTTCTCTCTAACCACCACTCCATTCATGAACAGCTTCCCCGCACTGTCCATCTTCGTA
21829073 TATGACCTC
131 TATGACCTC
21829082 C
1 C
21829083 TATAATAAAN
Statistics
Matches: 138, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 138 1.00
ACGTcount: A:0.24, C:0.30, G:0.11, T:0.35
Consensus pattern (139 bp):
CACAGTTAATACCGCTCTAAGGTTCTTTTTATATACCTCTGATTTCCCTTTTCACAACATGAAAA
TGTTGATGTTCTCTCTAACCACCACTCCATTCATGAACAGCTTCCCCGCACTGTCCATCTTCGTA
TATGACCTC
Found at i:21832139 original size:4 final size:4
Alignment explanation
Indices: 21832130--21832161 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
21832120 GATAATTTGG
21832130 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
21832162 TGTATGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:21832288 original size:21 final size:21
Alignment explanation
Indices: 21832259--21832302 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
21832249 AGTTTGTTGC
* *
21832259 ATCTGAATGCATTTGATTTGT
1 ATCTCAATGCATTTCATTTGT
21832280 ATCTCAATGCATTTCATTTGT
1 ATCTCAATGCATTTCATTTGT
21832301 AT
1 AT
21832303 GTTGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.48
Consensus pattern (21 bp):
ATCTCAATGCATTTCATTTGT
Found at i:21841336 original size:18 final size:20
Alignment explanation
Indices: 21841295--21841336 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
21841285 ATTAGAAGTT
* *
21841295 CAAAATATTTATCATTGTTT
1 CAAAATATTTAACATTGTTC
21841315 CAAAAT-TTTAACATT-TTC
1 CAAAATATTTAACATTGTTC
21841333 CAAA
1 CAAA
21841337 TTTGCTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 8 0.40
20 6 0.30
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.43
Consensus pattern (20 bp):
CAAAATATTTAACATTGTTC
Found at i:21845102 original size:15 final size:15
Alignment explanation
Indices: 21845078--21845107 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21845068 AGGTACGTAG
*
21845078 AATTATTTTTTATAT
1 AATTAGTTTTTATAT
21845093 AATTAGTTTTTATAT
1 AATTAGTTTTTATAT
21845108 TTTTCCTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
AATTAGTTTTTATAT
Found at i:21847587 original size:12 final size:12
Alignment explanation
Indices: 21847570--21847594 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21847560 TTACCCCAAT
21847570 AAAATAACTCAG
1 AAAATAACTCAG
21847582 AAAATAACTCAG
1 AAAATAACTCAG
21847594 A
1 A
21847595 GATATAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATAACTCAG
Found at i:21848206 original size:15 final size:15
Alignment explanation
Indices: 21848186--21848242 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 15
21848176 CATCATTTAT
21848186 AATTTATATTCAATA
1 AATTTATATTCAATA
* *
21848201 AATTTATATTTAAATT
1 AATTTATA-TTCAATA
* *
21848217 TATTCAATATTCAATA
1 AATT-TATATTCAATA
21848233 AATTTATATT
1 AATTTATATT
21848243 TAAATTTTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
15 13 0.41
16 16 0.50
17 3 0.09
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTTATATTCAATA
Found at i:21852860 original size:20 final size:21
Alignment explanation
Indices: 21852835--21852881 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
21852825 CTTGTTTTTA
*
21852835 TATATATTATTAAT-ATAGAT
1 TATATATTATAAATAATAGAT
*
21852855 TATATATTATAAATAATTGAT
1 TATATATTATAAATAATAGAT
21852876 TATATA
1 TATATA
21852882 GAGAGATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (21 bp):
TATATATTATAAATAATAGAT
Found at i:21853719 original size:22 final size:24
Alignment explanation
Indices: 21853680--21853724 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
21853670 AAATTTTTTT
*
21853680 AAATTTTATATATTATTTTAATAA
1 AAATTTTATATATTATTTAAATAA
21853704 AAATTTTA-ATA-TATTTAAATA
1 AAATTTTATATATTATTTAAATA
21853725 CATTTAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
AAATTTTATATATTATTTAAATAA
Found at i:21853768 original size:11 final size:10
Alignment explanation
Indices: 21853754--21853799 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
21853744 ATTATTTTAT
21853754 TTTATAAAAA
1 TTTATAAAAA
21853764 TTT-TAAAAA
1 TTTATAAAAA
*
21853773 TATATAAAAA
1 TTTATAAAAA
*
21853783 TTAATAAAAA
1 TTTATAAAAA
*
21853793 TATATAA
1 TTTATAA
21853800 TTCAATTTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 8 0.27
10 22 0.73
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:21853806 original size:22 final size:20
Alignment explanation
Indices: 21853756--21853799 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
21853746 TATTTTATTT
*
21853756 TATAAAAATT-TTAAAAATA
1 TATAAAAATTAATAAAAATA
21853775 TATAAAAATTAATAAAAATA
1 TATAAAAATTAATAAAAATA
21853795 TATAA
1 TATAA
21853800 TTCAATTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
TATAAAAATTAATAAAAATA
Found at i:21862212 original size:22 final size:21
Alignment explanation
Indices: 21862187--21862244 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 21
21862177 TAAATAATAG
*
21862187 TAAAATATTTAATGTGATATTT
1 TAAAATATTTAATATGATA-TT
*
21862209 TAAAAATTTTTAATATGATATT
1 T-AAAATATTTAATATGATATT
*
21862231 TAAACTA-TTAATAT
1 TAAAATATTTAATAT
21862245 ATAAATTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 7 0.23
21 4 0.13
22 4 0.13
23 16 0.52
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (21 bp):
TAAAATATTTAATATGATATT
Found at i:21862220 original size:23 final size:23
Alignment explanation
Indices: 21862188--21862231 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
21862178 AAATAATAGT
*
21862188 AAAATATTTAATGTGATATTTTA
1 AAAATATTTAATATGATATTTTA
*
21862211 AAAATTTTTAATATGATATTT
1 AAAATATTTAATATGATATTT
21862232 AAACTATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (23 bp):
AAAATATTTAATATGATATTTTA
Found at i:21864183 original size:17 final size:15
Alignment explanation
Indices: 21864154--21864187 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
21864144 AATAATTATA
21864154 TATTTATTTAAATTT
1 TATTTATTTAAATTT
21864169 TATTTAATTTGAAATTT
1 TATTT-ATTT-AAATTT
21864186 TA
1 TA
21864188 AGTTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 4 0.24
17 8 0.47
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TATTTATTTAAATTT
Found at i:21869122 original size:12 final size:12
Alignment explanation
Indices: 21869105--21869129 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21869095 TAATAATATG
21869105 TAAAAAAATTAT
1 TAAAAAAATTAT
21869117 TAAAAAAATTAT
1 TAAAAAAATTAT
21869129 T
1 T
21869130 TATAATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAAAAAAATTAT
Found at i:21881309 original size:30 final size:30
Alignment explanation
Indices: 21881275--21881349 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
21881265 ATTGAATTAT
21881275 GTTAAAGGCTTATTTAAAT-ACAAATTAAAG
1 GTTAAAGGCTTATTTAAATGA-AAATTAAAG
* *
21881305 GTTAATGGCCTATTTAAATGAAAATTAAAG
1 GTTAAAGGCTTATTTAAATGAAAATTAAAG
* **
21881335 ATTATGGGCTTATTT
1 GTTAAAGGCTTATTT
21881350 GGGTGTAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 37 0.97
31 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (30 bp):
GTTAAAGGCTTATTTAAATGAAAATTAAAG
Found at i:21884009 original size:20 final size:20
Alignment explanation
Indices: 21883986--21884031 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
21883976 ATTACTAATC
* *
21883986 AAATATTATTATATTAATAA
1 AAATAATATTATATGAATAA
*
21884006 AAATAATATTTTATGAATAA
1 AAATAATATTATATGAATAA
*
21884026 CAATAA
1 AAATAA
21884032 AATTTTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
AAATAATATTATATGAATAA
Found at i:21884036 original size:20 final size:20
Alignment explanation
Indices: 21884001--21884038 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21883991 TTATTATATT
*
21884001 AATAAAAATAATATTTTATG
1 AATAAAAATAAAATTTTATG
*
21884021 AATAACAATAAAATTTTA
1 AATAAAAATAAAATTTTA
21884039 AAATATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (20 bp):
AATAAAAATAAAATTTTATG
Found at i:21884115 original size:15 final size:16
Alignment explanation
Indices: 21884098--21884174 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
21884088 TTGATATAAT
21884098 ATTTTAATATTAAATA
1 ATTTTAATATTAAATA
* *
21884114 TTATTATTAA-AATATAATC
1 --ATT-TTAATATTA-AATA
21884133 ATTTGTAATATT-AATA
1 ATTT-TAATATTAAATA
*
21884149 ATTTTAATAATAAATA
1 ATTTTAATATTAAATA
*
21884165 ATTTCAATAT
1 ATTTTAATAT
21884175 ATTTTAATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
15 6 0.13
16 20 0.43
17 6 0.13
18 8 0.17
19 7 0.15
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (16 bp):
ATTTTAATATTAAATA
Found at i:21884123 original size:19 final size:19
Alignment explanation
Indices: 21884081--21884123 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
21884071 GTTTTAAGTG
*
21884081 TTTAATATTGATATAATAT
1 TTTAATATTGAAATAATAT
*
21884100 TTTAATATT-AAATATTAT
1 TTTAATATTGAAATAATAT
21884118 TATTAA
1 T-TTAA
21884124 AATATAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTAATATTGAAATAATAT
Found at i:21884182 original size:26 final size:26
Alignment explanation
Indices: 21884145--21884210 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
21884135 TTGTAATATT
21884145 AATAATTTTAATAATAAATAA-TTTC
1 AATAATTTTAATAATAAATAATTTTC
*
21884170 AATATATTTTAATAATAAATAATTTTT
1 AATA-ATTTTAATAATAAATAATTTTC
21884197 AATAA-TTTAATAAT
1 AATAATTTTAATAAT
21884211 TACATCAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
25 13 0.34
26 18 0.47
27 7 0.18
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (26 bp):
AATAATTTTAATAATAAATAATTTTC
Found at i:21884194 original size:16 final size:16
Alignment explanation
Indices: 21884098--21884202 Score: 64
Period size: 17 Copynumber: 6.7 Consensus size: 16
21884088 TTGATATAAT
*
21884098 ATTTTAATATTAAATA
1 ATTTTAATAATAAATA
*
21884114 TTATTATTAA-AATATAATC
1 --ATT-TTAATAATA-AATA
*
21884133 ATTTGTAAT-ATTAATA
1 ATTT-TAATAATAAATA
21884149 ATTTTAATAATAAATA
1 ATTTTAATAATAAATA
*
21884165 A-TTT--CAAT--AT-
1 ATTTTAATAATAAATA
21884175 ATTTTAATAATAAATA
1 ATTTTAATAATAAATA
21884191 ATTTTTAATAAT
1 A-TTTTAATAAT
21884203 TTAATAATTA
Statistics
Matches: 68, Mismatches: 7, Indels: 25
0.68 0.07 0.25
Matches are distributed among these distances:
10 1 0.01
11 5 0.07
13 6 0.09
15 9 0.13
16 16 0.24
17 18 0.26
18 6 0.09
19 7 0.10
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (16 bp):
ATTTTAATAATAAATA
Found at i:21888485 original size:3 final size:3
Alignment explanation
Indices: 21888477--21888505 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
21888467 AAAACCGTCC
21888477 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
21888506 CCGAGGCCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:21888828 original size:18 final size:19
Alignment explanation
Indices: 21888802--21888844 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
21888792 TTATGGATCG
*
21888802 AAAATATCATTT-AAATTT
1 AAAAGATCATTTAAAATTT
21888820 AAAAGATCATTTAAAATTT
1 AAAAGATCATTTAAAATTT
21888839 AAAAGA
1 AAAAGA
21888845 ATTTGAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
AAAAGATCATTTAAAATTT
Found at i:21888979 original size:13 final size:14
Alignment explanation
Indices: 21888961--21888989 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21888951 CCAACTCAAA
21888961 TAAAATA-TATAAT
1 TAAAATATTATAAT
21888974 TAAAATATTATAAT
1 TAAAATATTATAAT
21888988 TA
1 TA
21888990 TATAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAAATATTATAAT
Found at i:21895443 original size:309 final size:308
Alignment explanation
Indices: 21894884--21895509 Score: 864
Period size: 309 Copynumber: 2.0 Consensus size: 308
21894874 TAACAAATTG
* * *
21894884 TTAAAGGCGTTTCATAATAAAAGACGCCTTTAATAATTCAAAAAAAAATTTTTTAGAAAATTATT
1 TTAAAGGCGTTTCATAATAAAAAACACCTTTAATAATTC-AAAAAAAATTTTTTAAAAAATTATT
* * * * * *
21894949 GAAAGCGTTGTTATTTGTAACTGTCTTTACTAATTATCTACAAATTGTGATAAGAATTATTAAAG
65 GAAAGCGTTGTTATATGCAACTGCCTTCACTAATTATCTACAAACTATGATAAGAATTATTAAAG
** * ** *
21895014 GTGTCTTTCTTGGATATACGCCTTCAATAACCATGTTAAAATTTATGTGACGGTATATAAAAAGT
130 GCATATTTCTTGGATATACGCCTTCAATAACCATGTTAAAATTTATGTGACAATATATAAAAAGC
* ** * * *
21895079 ATTTTATAGTAGAAGATGCCTTTAATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGTGTC
195 ATTTTACAGTAGAAGACACCTTTAATAATTCCCAAAATTGTTAGTGAAAAAATTTTGAAGGTGTA
21895144 TGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTCAAATATATA
260 TGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTCAAATATATA
* *
21895193 TTAAAGGTGTTTCATAATAAAAAAAACACCTTTAATAATTC-AAAAACATTTTTTAAAGAAATT-
1 TTAAAGGCGTTTCATAAT--AAAAAACACCTTTAATAATTCAAAAAAAATTTTTTAAA-AAATTA
*
21895256 TTGAAAGCGTTGTTATATGC-AGTCGCCTTCACTAATTATCTACAAACTATGATAAGAATTATTA
63 TTGAAAGCGTTGTTATATGCAACT-GCCTTCACTAATTATCTACAAACTATGATAAGAATTATTA
* *
21895320 AAGGCATATTTCTTGGATATATGCCTTCAATAACCATGTTAAAATTTATGTTACAATATATAAAA
127 AAGGCATATTTCTTGGATATACGCCTTCAATAACCATGTTAAAATTTATGTGACAATATATAAAA
* * *
21895385 GGCATTTTACAGTAGAAGACACCTTTCATGATTCCCAAAA-TGTTAGGTGAAAAAATTTTGAAGG
192 AGCATTTTACAGTAGAAGACACCTTTAATAATTCCCAAAATTGTTA-GTGAAAAAATTTTGAAGG
* * * *
21895449 TGTATGTTATTAACAAATACCTTCAGTAATGGATTACTAAGTTTAAAAATAAA
256 TGTATGTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTCAAATATATA
*
21895502 TTGAAGGC
1 TTAAAGGC
21895510 ACCTTTTCGA
Statistics
Matches: 277, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
308 6 0.02
309 247 0.89
310 5 0.02
311 19 0.07
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (308 bp):
TTAAAGGCGTTTCATAATAAAAAACACCTTTAATAATTCAAAAAAAATTTTTTAAAAAATTATTG
AAAGCGTTGTTATATGCAACTGCCTTCACTAATTATCTACAAACTATGATAAGAATTATTAAAGG
CATATTTCTTGGATATACGCCTTCAATAACCATGTTAAAATTTATGTGACAATATATAAAAAGCA
TTTTACAGTAGAAGACACCTTTAATAATTCCCAAAATTGTTAGTGAAAAAATTTTGAAGGTGTAT
GTTATTAACAAACACCTTCAGTAATGGATTACTAAGTTCAAATATATA
Found at i:21895927 original size:358 final size:355
Alignment explanation
Indices: 21895202--21896448 Score: 1494
Period size: 358 Copynumber: 3.5 Consensus size: 355
21895192 ATTAAAGGTG
* * *
21895202 TTTCATAATAAAAAAAACACCTTTAATAATTC-AAAAACATTTTTTAA-AGAAATT-TTGAAAGC
1 TTTCATAAT-AAAAAAA-GCCTTTAATAATTCAAAAAAAATTTTTTAAGA-AAATTATTGAAGGC
* * * *
21895264 GTTGTTATATGCAGTCGCCTTCACTAATTATCTACAAACTATGATAAGAATTATTAAAGGCAT-A
63 GTTGTTATCTACAATCGCCTTCACTAATTATCTACAAACTATGATAAAAATTATTAAAGGCATCA
* * * *
21895328 TTTCTTGGATATATGCCTTCAATAACCATGTTAAAATTTATGTTACAATATATAAAAGGCATTTT
128 -TTCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTATGTGACAATATATAAAAGGTATTTT
* * * * *
21895393 ACAGTAGAAGACACCTTTCATGATTCCCAAAATGTTAGGTGAAAAAATTTTGAAGGTGTATGTTA
192 ACAGTAGAAGACACCTTTAATGATTCTCAAAATTTTA-GTGAGAAAATTTTGAAGG-GTTTGTTA
* * ** * *
21895458 TTAACAAATACCTTCAGTAATGGATTACTAAGTTTAAAAATAAATTGAAGGCACCTTTTCGAATA
255 TTAACAAATGCCTTCAGTAATAGATTACTAAGTTTAAAGGTATATTGAATGCACCTTTTCGAATA
*
21895523 AACGCCTTCCATAACCATCATGGTATA-TGAAAGGCA
320 AACGCATTCCATAACCATCATGGTATATTG-AAGGCA
* * *
21895559 TTTCATAATAAAAAAAGTCTTTAATAATCCGAAAAAAAATTTTTTAAGAAAATTATTTAAGGCGT
1 TTTCATAATAAAAAAAGCCTTTAATAATTC-AAAAAAAATTTTTTAAGAAAATTATTGAAGGCGT
** ** *
21895624 TGTTATCTGTAATCATCTTCACTAATTATCTACAAACTATGATAAAAATTATTAAAGGCGTCATT
65 TGTTATCTACAATCGCCTTCACTAATTATCTACAAACTATGATAAAAATTATTAAAGGCATCATT
* * ** *
21895689 CTTGGATATACGCCTTCAATAACCGTGTTGAAATGTATGTGACGGTATATATAAGGTATTTTACA
130 CTTGGATATACGCCTTCAATAACCGTGTTAAAATTTATGTGACAATATATAAAAGGTATTTTACA
*
21895754 GTAGAAGACACTTTTAATGATTCTCAAAATTTTTAGTGAGAAAATTTTGAAGGCGTTTGTTATTA
195 GTAGAAGACACCTTTAATGATTCTCAAAA-TTTTAGTGAGAAAATTTTGAAGG-GTTTGTTATTA
* * * *
21895819 AAAAATGCATTCAGTAATAGATTACTAAGTTTAAAGGTATATTGAATGTACCTTTTCAAATAAAC
258 ACAAATGCCTTCAGTAATAGATTACTAAGTTTAAAGGTATATTGAATGCACCTTTTCGAATAAAC
* *
21895884 GCATTTCATAACCATCATGGTATATTGAAGGTA
323 GCATTCCATAACCATCATGGTATATTGAAGGCA
* * * * **
21895917 TTTTATAATAAAAGACA-TCTTTAATAA-T-AAAAAAAA---TTTAAAAAAATTATTGAAGGTAT
1 TTTCATAATAAAA-AAAGCCTTTAATAATTCAAAAAAAATTTTTTAAGAAAATTATTGAAGGCGT
* * * ** *
21895976 TATTATCTATAA-CTGTCTTCACTAATTATCTACAAACTATGATAGGAATTATTAAAGGCATCTT
65 TGTTATCTACAATC-GCCTTCACTAATTATCTACAAACTATGATAAAAATTATTAAAGGCATCAT
* * *
21896040 TCTTGGATATACGCCTTTAATAATCGTGTTAAAATTTATGTGGCAATATATAAAAGGTATTTTAC
129 TCTTGGATATACGCCTTCAATAACCGTGTTAAAATTTATGTGACAATATATAAAAGGTATTTTAC
* ** * * *
21896105 AGTAAAAGATGCCTTTAATGATTTCTAAAAATTTTAGTGAGAAAATTTTGAAGGTTTCTATTATT
194 AGTAGAAGACACCTTTAATGA-TTCTCAAAATTTTAGTGAGAAAATTTTGAAGGGTT-TGTTATT
* * * * *
21896170 AACAAATGCCTTCAGTAATAGATCACTAAGTTTAAAGGCATATTAAATGCACTTTTTTTGAATAA
257 AACAAATGCCTTCAGTAATAGATTACTAAGTTTAAAGGTATATTGAATGCAC-CTTTTCGAATAA
*
21896235 ACGCATTCCATAACCATCGTGGTATATTGAAGGCA
321 ACGCATTCCATAACCATCATGGTATATTGAAGGCA
* * ** * *
21896270 TTTCATAATAAAATATGCCTTTAATAATTCAAAAAATCTTTTTTAAGCAAATTATTGAAGCCGTT
1 TTTCATAATAAAAAAAGCCTTTAATAATTCAAAAAAAATTTTTTAAGAAAATTATTGAAGGCGTT
* * * **
21896335 GTTATTTACAAACGCCTTCACTAATTATCTACAAATTATGATAAAAATTATTAAAGGCATTTTTC
66 GTTATCTACAATCGCCTTCACTAATTATCTACAAACTATGATAAAAATTATTAAAGGCATCATTC
** * *
21896400 TTATATATACGCCTTCAATAACTGTGTTAAAATTTGTGT-AGCAATATAT
131 TTGGATATACGCCTTCAATAACCGTGTTAAAATTTATGTGA-CAATATAT
21896449 TTAAGACCCT
Statistics
Matches: 760, Mismatches: 110, Indels: 39
0.84 0.12 0.04
Matches are distributed among these distances:
351 3 0.00
352 223 0.29
353 70 0.09
354 1 0.00
355 25 0.03
356 7 0.01
357 28 0.04
358 393 0.52
359 10 0.01
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (355 bp):
TTTCATAATAAAAAAAGCCTTTAATAATTCAAAAAAAATTTTTTAAGAAAATTATTGAAGGCGTT
GTTATCTACAATCGCCTTCACTAATTATCTACAAACTATGATAAAAATTATTAAAGGCATCATTC
TTGGATATACGCCTTCAATAACCGTGTTAAAATTTATGTGACAATATATAAAAGGTATTTTACAG
TAGAAGACACCTTTAATGATTCTCAAAATTTTAGTGAGAAAATTTTGAAGGGTTTGTTATTAACA
AATGCCTTCAGTAATAGATTACTAAGTTTAAAGGTATATTGAATGCACCTTTTCGAATAAACGCA
TTCCATAACCATCATGGTATATTGAAGGCA
Found at i:21903643 original size:19 final size:20
Alignment explanation
Indices: 21903621--21903666 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
21903611 TAATAACATC
* *
21903621 AATAAAAAAT-AACATAAAA
1 AATAAAAAATCAAAACAAAA
21903640 AAT-AAAAATCAAAACAAAA
1 AATAAAAAATCAAAACAAAA
21903659 AATAAAAA
1 AATAAAAA
21903667 GAAAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 6 0.26
19 13 0.57
20 4 0.17
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (20 bp):
AATAAAAAATCAAAACAAAA
Found at i:21903672 original size:19 final size:19
Alignment explanation
Indices: 21903636--21903672 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
21903626 AAAATAACAT
**
21903636 AAAAAATAAAAATCAAAAC
1 AAAAAATAAAAAGAAAAAC
21903655 AAAAAATAAAAAGAAAAA
1 AAAAAATAAAAAGAAAAA
21903673 GAAACTGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.84, C:0.05, G:0.03, T:0.08
Consensus pattern (19 bp):
AAAAAATAAAAAGAAAAAC
Found at i:21904701 original size:39 final size:38
Alignment explanation
Indices: 21904644--21904961 Score: 242
Period size: 39 Copynumber: 8.2 Consensus size: 38
21904634 TTATGAAAAT
* * * *
21904644 TTTAAATTTAAAAAGCTCATCTCACCATAGGCAATGAAC
1 TTTAAA-TTCAAAAGCTCATCTAACCAGAGGCAACGAAC
* * *
21904683 TTTAAATTCAAAAGGCTCATTTAACCAAAGGCAACAAAC
1 TTTAAATTCAAAA-GCTCATCTAACCAGAGGCAACGAAC
** * *
21904722 TTTAAATGTTGAAAGCTCCTCTCACCAGAGGCAACGAAC
1 TTTAAAT-TCAAAAGCTCATCTAACCAGAGGCAACGAAC
* * * * *
21904761 TTTAAATTCAAAAGGCTCCTTTAACCAAAGACAACAAAC
1 TTTAAATTCAAAA-GCTCATCTAACCAGAGGCAACGAAC
** * * * *
21904800 TTTAAATGTTGAAAGCTCCTCTCACTAGAGGCAATGAAC
1 TTTAAAT-TCAAAAGCTCATCTAACCAGAGGCAACGAAC
* ** *
21904839 TTTAAATTCAAAAGCTTC-TTTAACCAGAGATAATGAAC
1 TTTAAATTCAAAAGC-TCATCTAACCAGAGGCAACGAAC
* * * *
21904877 TTTAAATTCAAAAGCTCATTTAACCAAAGACAACAAAC
1 TTTAAATTCAAAAGCTCATCTAACCAGAGGCAACGAAC
* * * * *
21904915 TTTAAATATTGAAAAGCTCCTCTGACCAGAGACAACAAAC
1 TTT-AA-ATTCAAAAGCTCATCTAACCAGAGGCAACGAAC
21904955 TTTAAAT
1 TTTAAAT
21904962 GGCTCCTTTA
Statistics
Matches: 226, Mismatches: 45, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
37 2 0.01
38 67 0.30
39 118 0.52
40 39 0.17
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (38 bp):
TTTAAATTCAAAAGCTCATCTAACCAGAGGCAACGAAC
Found at i:21904745 original size:78 final size:77
Alignment explanation
Indices: 21904655--21904962 Score: 343
Period size: 78 Copynumber: 4.0 Consensus size: 77
21904645 TTAAATTTAA
* * *
21904655 AAAGCTCATCTCACCATAGGCAATGAACTTTAAATTCAAAAGGCTCATTTAACCAAAGGCAACAA
1 AAAGCTCCTCTCACCAGAGGCAATGAACTTTAAATTCAAAAGGCTC-TTTAACCAAAGACAACAA
21904720 ACTTTAAATGTTG
65 ACTTTAAATGTTG
*
21904733 AAAGCTCCTCTCACCAGAGGCAACGAACTTTAAATTCAAAAGGCTCCTTTAACCAAAGACAACAA
1 AAAGCTCCTCTCACCAGAGGCAATGAACTTTAAATTCAAAAGGCT-CTTTAACCAAAGACAACAA
21904798 ACTTTAAATGTTG
65 ACTTTAAATGTTG
* * * **
21904811 AAAGCTCCTCTCACTAGAGGCAATGAACTTTAAATTCAAAA-GCTTCTTTAACCAGAGATAATGA
1 AAAGCTCCTCTCACCAGAGGCAATGAACTTTAAATTCAAAAGGC-TCTTTAACCAAAGACAACAA
**
21904875 ACTTTAAAT-TCA
65 ACTTTAAATGTTG
* * * * * ** * * * *
21904887 AAAGCTCATTTAACCAAAGACAACAAACTTTAAATATTGAAAA-GCTCCTCTGACCAGAGACAAC
1 AAAGCTCCTCTCACCAGAGGCAATGAACTTT-AA-ATTCAAAAGGCT-CTTTAACCAAAGACAAC
21904951 AAACTTTAAATG
63 AAACTTTAAATG
21904963 GCTCCTTTAA
Statistics
Matches: 198, Mismatches: 26, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
76 24 0.12
77 29 0.15
78 144 0.73
79 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25
Consensus pattern (77 bp):
AAAGCTCCTCTCACCAGAGGCAATGAACTTTAAATTCAAAAGGCTCTTTAACCAAAGACAACAAA
CTTTAAATGTTG
Found at i:21904874 original size:38 final size:38
Alignment explanation
Indices: 21904679--21904995 Score: 257
Period size: 39 Copynumber: 8.3 Consensus size: 38
21904669 CATAGGCAAT
* *
21904679 GAACTTTAAATTCAAAAGGCTCATTTAACCAAAGGCAAC
1 GAACTTTAAATTCAAAA-GCTCCTTTAACCAAAGACAAC
* ** * * * *
21904718 AAACTTTAAATGTTGAAAGCTCCTCTCACCAGAGGCAAC
1 GAACTTTAAAT-TCAAAAGCTCCTTTAACCAAAGACAAC
21904757 GAACTTTAAATTCAAAAGGCTCCTTTAACCAAAGACAAC
1 GAACTTTAAATTCAAAA-GCTCCTTTAACCAAAGACAAC
* ** * * * * * *
21904796 AAACTTTAAATGTTGAAAGCTCCTCTCACTAGAGGCAAT
1 GAACTTTAAAT-TCAAAAGCTCCTTTAACCAAAGACAAC
* * * *
21904835 GAACTTTAAATTCAAAAGCTTCTTTAACCAGAGATAAT
1 GAACTTTAAATTCAAAAGCTCCTTTAACCAAAGACAAC
*
21904873 GAACTTTAAATTCAAAAGCTCATTTAACCAAAGACAAC
1 GAACTTTAAATTCAAAAGCTCCTTTAACCAAAGACAAC
* * * * *
21904911 AAACTTTAAATATTGAAAAGCTCCTCTGACCAGAGACAAC
1 GAACTTT-AA-ATTCAAAAGCTCCTTTAACCAAAGACAAC
* * *
21904951 AAACTTTAAA-T----GGCTCCTTTAACCAAAGGCAAC
1 GAACTTTAAATTCAAAAGCTCCTTTAACCAAAGACAAC
*
21904984 AAACTTTAAATT
1 GAACTTTAAATT
21904996 AAAGATCTGA
Statistics
Matches: 224, Mismatches: 48, Indels: 17
0.78 0.17 0.06
Matches are distributed among these distances:
33 27 0.12
34 1 0.00
37 1 0.00
38 63 0.28
39 93 0.42
40 39 0.17
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.26
Consensus pattern (38 bp):
GAACTTTAAATTCAAAAGCTCCTTTAACCAAAGACAAC
Found at i:21904998 original size:116 final size:113
Alignment explanation
Indices: 21904714--21904995 Score: 300
Period size: 116 Copynumber: 2.5 Consensus size: 113
21904704 TAACCAAAGG
* * * * *
21904714 CAACAAACTTTAAATGTTGAAAGCTCCTCTCACCAGAGGCAACGAACTTTAAATTCAAAAGGCTC
1 CAACAAACTTTAAA--TT--AAGCTCCTTTAACCAAAGACAACAAACTTTAAATTCAAAAGGCTC
* * * *
21904779 CTTTAACCAAAGACAACAAACTTTAAATGTTGAAAGCTCCTCTCACTAGAGG
62 ATTTAACCAAAGACAACAAACTTTAAATATTGAAAGCTCCTCTCACCAGAGA
** * * * **
21904831 CAATGAACTTTAAATTCAAAAGCTTCTTTAACCAGAGATAATGAACTTTAAATTCAAAA-GCTCA
1 CAACAAACTTTAAATT---AAGCTCCTTTAACCAAAGACAACAAACTTTAAATTCAAAAGGCTCA
*
21904895 TTTAACCAAAGACAACAAACTTTAAATATTGAAAAGCTCCTCTGACCAGAGA
63 TTTAACCAAAGACAACAAACTTTAAATATTG-AAAGCTCCTCTCACCAGAGA
* *
21904947 CAACAAACTTTAAA-T-GGCTCCTTTAACCAAAGGCAACAAACTTTAAATT
1 CAACAAACTTTAAATTAAGCTCCTTTAACCAAAGACAACAAACTTTAAATT
21904996 AAAGATCTGA
Statistics
Matches: 140, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
111 27 0.19
115 37 0.26
116 64 0.46
117 12 0.09
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (113 bp):
CAACAAACTTTAAATTAAGCTCCTTTAACCAAAGACAACAAACTTTAAATTCAAAAGGCTCATTT
AACCAAAGACAACAAACTTTAAATATTGAAAGCTCCTCTCACCAGAGA
Found at i:21905199 original size:41 final size:40
Alignment explanation
Indices: 21905098--21905212 Score: 162
Period size: 41 Copynumber: 2.9 Consensus size: 40
21905088 AAAAAGATCC
* *
21905098 TCTGATCAGAGGCAACAAACTTTAAATTT-AAAAGGCTCT
1 TCTGACCAGAGGCAACAAACTTTAAATTTAAAAATGCTCT
*
21905137 TCTGGCCAGAGGCAACAAACTTTAAATGTTAAAAATGCTCAT
1 TCTGACCAGAGGCAACAAACTTTAAAT-TTAAAAATGCTC-T
*
21905179 T-TGACCAGAGGCAACAAACTTTAAATTCAAAAAT
1 TCTGACCAGAGGCAACAAACTTTAAATTTAAAAAT
21905213 CTGAGAAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
39 25 0.37
40 9 0.13
41 32 0.47
42 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (40 bp):
TCTGACCAGAGGCAACAAACTTTAAATTTAAAAATGCTCT
Found at i:21918094 original size:18 final size:19
Alignment explanation
Indices: 21918053--21918101 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
21918043 TTCTGGTGGT
21918053 CAAAAAATTCAACAGTCA-
1 CAAAAAATTCAACAGTCAC
* * *
21918071 CTAAAAATTCAACCGTCGC
1 CAAAAAATTCAACAGTCAC
21918090 CAAAAAATTCAA
1 CAAAAAATTCAA
21918102 ACTTTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.51, C:0.24, G:0.06, T:0.18
Consensus pattern (19 bp):
CAAAAAATTCAACAGTCAC
Found at i:21918572 original size:3 final size:3
Alignment explanation
Indices: 21918561--21918599 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
21918551 TTTAATTAAT
21918561 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
21918600 GTCAAAATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:21920424 original size:134 final size:134
Alignment explanation
Indices: 21920180--21920501 Score: 364
Period size: 134 Copynumber: 2.4 Consensus size: 134
21920170 CTTTTTATAG
* *
21920180 AAACGCCACTAAAACAACGACGTTTTTCTCATAACAATGTCACTGAATTAGTAGCGACTAAAAGA
1 AAACGCCACTAAAACAACGACGTTTTTCTCATAAAAATGTCACTGAATTAGCAGCGACTAAAAGA
* * * * * * *
21920245 TACAAATGTCATTAATATTGAGGCGTTTGCATATTCAAATGCCTCTAAAGTAGCGGTATTTTCTG
66 TACAAACGTCACTAATATTAAGGCATTTGCATATTCAAATCCCTCTAAAGTAACGGCATTTTCTG
21920310 TTAC
131 TTAC
* * * *
21920314 AAACGCC-CTCAAAGCAACGGCGTTTTTCTCATAAAAATG-CTACTGAATTAGCGGTGACTAAAA
1 AAACGCCACT-AAAACAACGACGTTTTTCTCATAAAAATGTC-ACTGAATTAGCAGCGACTAAAA
* * * *
21920377 GATACAAACGTCGCTAATATTAAGGCATTTTCATATTCGAATCCCTCTAAAGTAACGGCGTTTTC
64 GATACAAACGTCACTAATATTAAGGCATTTGCATATTCAAATCCCTCTAAAGTAACGGCATTTTC
21920442 TGTTAC
129 TGTTAC
* * * ** *
21920448 AAACGTCACCAAAGCAATAACGTTTTTTGTCAT-AAAATCGTCACT-AATTTAGCA
1 AAACGCCACTAAAACAACGACG-TTTTTCTCATAAAAAT-GTCACTGAA-TTAGCA
21920502 CGTCTCAAAG
Statistics
Matches: 157, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
133 3 0.02
134 134 0.85
135 19 0.12
136 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (134 bp):
AAACGCCACTAAAACAACGACGTTTTTCTCATAAAAATGTCACTGAATTAGCAGCGACTAAAAGA
TACAAACGTCACTAATATTAAGGCATTTGCATATTCAAATCCCTCTAAAGTAACGGCATTTTCTG
TTAC
Found at i:21924856 original size:2 final size:2
Alignment explanation
Indices: 21924851--21924882 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
21924841 TATATATATT
21924851 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
21924883 GCTATCACCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:21924917 original size:11 final size:11
Alignment explanation
Indices: 21924901--21924925 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21924891 CTCTTCATTT
21924901 GAATCTTTAGC
1 GAATCTTTAGC
21924912 GAATCTTTAGC
1 GAATCTTTAGC
21924923 GAA
1 GAA
21924926 ATTTCATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (11 bp):
GAATCTTTAGC
Found at i:21936124 original size:13 final size:13
Alignment explanation
Indices: 21936106--21936130 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21936096 TAGACATCTT
21936106 ATTAACCAATGTA
1 ATTAACCAATGTA
21936119 ATTAACCAATGT
1 ATTAACCAATGT
21936131 GTTTAGATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
ATTAACCAATGTA
Found at i:21939633 original size:13 final size:13
Alignment explanation
Indices: 21939615--21939664 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
21939605 AAATTATGAT
21939615 ATAAAT-TTTTAA
1 ATAAATATTTTAA
21939627 GATAAATATTTTAA
1 -ATAAATATTTTAA
* *
21939641 ATAAAAATATT-A
1 ATAAATATTTTAA
*
21939653 ATAAATTTTTTA
1 ATAAATATTTTA
21939665 TTGTTAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
12 9 0.30
13 15 0.50
14 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (13 bp):
ATAAATATTTTAA
Found at i:21941980 original size:20 final size:17
Alignment explanation
Indices: 21941932--21941984 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 17
21941922 ATCATATTAA
21941932 ATATTTTTAAAATTTAT
1 ATATTTTTAAAATTTAT
*
21941949 ATACTATATTAAATATTTTATT
1 ATA-T-TTTTAAA-A-TTTA-T
21941971 ATATTTTTAAAATT
1 ATATTTTTAAAATT
21941985 ATCTATGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
17 3 0.10
18 3 0.10
19 7 0.24
20 7 0.24
21 5 0.17
22 4 0.14
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTTTTAAAATTTAT
Found at i:21942859 original size:21 final size:22
Alignment explanation
Indices: 21942835--21942877 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
21942825 TCTGCTTTAT
21942835 TATTAATTTTTTTAAT-AAAAA
1 TATTAATTTTTTTAATGAAAAA
* *
21942856 TATTATTTTTTTTTATGAAAAA
1 TATTAATTTTTTTAATGAAAAA
21942878 ATCAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TATTAATTTTTTTAATGAAAAA
Found at i:21943126 original size:12 final size:12
Alignment explanation
Indices: 21943111--21943145 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
21943101 AACTAATTTT
21943111 AATAAAATTAAA
1 AATAAAATTAAA
21943123 AATAATAA-TAAA
1 AATAA-AATTAAA
21943135 AATAAAATTAA
1 AATAAAATTAA
21943146 TTGTTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AATAAAATTAAA
Found at i:21943133 original size:18 final size:18
Alignment explanation
Indices: 21943110--21943146 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
21943100 AAACTAATTT
*
21943110 TAATAAAATTAAAAATAA
1 TAATAAAAATAAAAATAA
*
21943128 TAATAAAAATAAAATTAA
1 TAATAAAAATAAAAATAA
21943146 T
1 T
21943147 TGTTATAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAATAAAAATAAAAATAA
Found at i:21943174 original size:21 final size:21
Alignment explanation
Indices: 21943136--21943175 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
21943126 AATAATAAAA
* **
21943136 ATAAAATTAATTGTTATAATG
1 ATAAAATTAAATACTATAATG
21943157 ATAAAATTAAATACTATAA
1 ATAAAATTAAATACTATAA
21943176 GGATTGCATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (21 bp):
ATAAAATTAAATACTATAATG
Found at i:21949403 original size:19 final size:19
Alignment explanation
Indices: 21949381--21949433 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
21949371 TTTAGTGATA
21949381 AAAAATTTAAAAATAAATT
1 AAAAATTTAAAAATAAATT
21949400 AAAAA-TT-AAAA-AAATT
1 AAAAATTTAAAAATAAATT
*
21949416 AATAAATTGAAAAATAAA
1 AA-AAATTTAAAAATAAA
21949434 AAGTTTTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 7 0.24
17 7 0.24
18 3 0.10
19 9 0.31
20 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAAATTTAAAAATAAATT
Found at i:21949416 original size:16 final size:18
Alignment explanation
Indices: 21949390--21949429 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
21949380 AAAAAATTTA
21949390 AAAATAAATTAA-AAATT-
1 AAAA-AAATTAATAAATTG
21949407 AAAAAAATTAATAAATTG
1 AAAAAAATTAATAAATTG
21949425 AAAAA
1 AAAAA
21949430 TAAAAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 9 0.43
18 5 0.24
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (18 bp):
AAAAAAATTAATAAATTG
Found at i:21953503 original size:44 final size:44
Alignment explanation
Indices: 21953440--21953524 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
21953430 ATTGAAATTT
21953440 AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTCTTA
1 AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTCTTA
* *
21953484 AATTGAGATTTTTACTTATTTTGTCAATTCATTTTAGTTTC
1 AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTC
21953525 AAAAATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.55
Consensus pattern (44 bp):
AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTCTTA
Found at i:21953983 original size:44 final size:44
Alignment explanation
Indices: 21953935--21954026 Score: 157
Period size: 44 Copynumber: 2.1 Consensus size: 44
21953925 CTAGGACTCT
*
21953935 AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTCTTA
1 AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTCTAA
* *
21953979 AATTGAGATTTTTACTTATTTTGTCAATTCATTTTAGTTTCTAA
1 AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTCTAA
21954023 AATT
1 AATT
21954027 TTTAATATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.54
Consensus pattern (44 bp):
AATTGAAATTTTTACTTATTTTGTCAATTCATGTTAGTTTCTAA
Found at i:21956705 original size:26 final size:25
Alignment explanation
Indices: 21956655--21956722 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 25
21956645 TAATAATATA
21956655 ATTATTAAAATATTAAAAATTATTT
1 ATTATTAAAATATTAAAAATTATTT
*
21956680 ATTATTAAAGTATATT-GAAATTATTT
1 ATTATTAAA--ATATTAAAAATTATTT
21956706 ATTATTAAAATAATTAA
1 ATTATTAAAAT-ATTAA
21956723 TATTCAAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
24 2 0.05
25 12 0.32
26 18 0.49
27 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (25 bp):
ATTATTAAAATATTAAAAATTATTT
Found at i:21956778 original size:19 final size:18
Alignment explanation
Indices: 21956743--21956788 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
21956733 TAATGATATT
21956743 TTAATAATAATATTTAATA
1 TTAA-AATAATATTTAATA
*
21956762 TTAAAATATTATATTAATA
1 TTAAAATAATAT-TTAATA
*
21956781 TAAAAATA
1 TTAAAATA
21956789 CTTAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAAAATAATATTTAATA
Found at i:21956862 original size:20 final size:20
Alignment explanation
Indices: 21956837--21956925 Score: 76
Period size: 23 Copynumber: 4.4 Consensus size: 20
21956827 TTTAAAATGT
*
21956837 TTAAAATAGTATTATTATTC
1 TTAAAATAGTATTATTATTA
* *
21956857 TTAAAATATTATTTTTATTAATA
1 TTAAAATAGTA---TTATTATTA
*
21956880 TTAAAATAGTAATATTTATTA
1 TTAAAATAGTATTA-TTATTA
*
21956901 TTAAAATA-T-TTA-TACTA
1 TTAAAATAGTATTATTATTA
21956918 TTAAAATA
1 TTAAAATA
21956926 TATATTTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
17 12 0.21
19 2 0.04
20 13 0.23
21 13 0.23
23 17 0.30
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
TTAAAATAGTATTATTATTA
Found at i:21956920 original size:44 final size:43
Alignment explanation
Indices: 21956837--21956921 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 43
21956827 TTTAAAATGT
* * **
21956837 TTAAAATAGTATTATTATTCTTAAAATATTATTTTTATTAATA
1 TTAAAATAGTAATATTATTATTAAAATATTATTACTATTAATA
21956880 TTAAAATAGTAATATTTATTATTAAAATATT-TATACTATTAA
1 TTAAAATAGTAATA-TTATTATTAAAATATTAT-TACTATTAA
21956922 AATATATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 14 0.39
44 22 0.61
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (43 bp):
TTAAAATAGTAATATTATTATTAAAATATTATTACTATTAATA
Found at i:21956921 original size:17 final size:15
Alignment explanation
Indices: 21956890--21956931 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 15
21956880 TTAAAATAGT
21956890 AATATTTATTATTAA
1 AATATTTATTATTAA
21956905 AATATTTATACTATTAA
1 AATATTTAT--TATTAA
*
21956922 AATATATATT
1 AATATTTATT
21956932 TTTTATATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 10 0.42
17 14 0.58
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
AATATTTATTATTAA
Found at i:21956932 original size:21 final size:21
Alignment explanation
Indices: 21956837--21956908 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 21
21956827 TTTAAAATGT
*
21956837 TTAAAATAGTAT-TATTAT-TC
1 TTAAAATAGTATAT-TTATATA
* *
21956857 TTAAAATATTATTTTTATTAATA
1 TTAAAATAGTATATTTA-T-ATA
21956880 TTAAAATAGTAATATTTAT-TA
1 TTAAAATAGT-ATATTTATATA
21956901 TTAAAATA
1 TTAAAATA
21956909 TTTATACTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
20 14 0.33
21 12 0.28
23 11 0.26
24 6 0.14
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (21 bp):
TTAAAATAGTATATTTATATA
Found at i:21960813 original size:22 final size:22
Alignment explanation
Indices: 21960785--21960828 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
21960775 CTAAATCTTC
*
21960785 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21960807 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21960829 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:21964205 original size:23 final size:23
Alignment explanation
Indices: 21964179--21964229 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
21964169 ACTAAATTTT
*
21964179 TGTGGAGAATGTGTCATGTGGTC
1 TGTGGAGAATGAGTCATGTGGTC
****
21964202 TGTGGCTCCTGAGTCATGTGGTC
1 TGTGGAGAATGAGTCATGTGGTC
21964225 TGTGG
1 TGTGG
21964230 CTCCTGAGTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.12, C:0.14, G:0.39, T:0.35
Consensus pattern (23 bp):
TGTGGAGAATGAGTCATGTGGTC
Found at i:21964230 original size:23 final size:23
Alignment explanation
Indices: 21964191--21964240 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
21964181 TGGAGAATGT
21964191 GTCATGTGGTCTGTGGCTCCTGA
1 GTCATGTGGTCTGTGGCTCCTGA
21964214 GTCATGTGGTCTGTGGCTCCTGA
1 GTCATGTGGTCTGTGGCTCCTGA
21964237 GTCA
1 GTCA
21964241 ATGACCCAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.10, C:0.22, G:0.34, T:0.34
Consensus pattern (23 bp):
GTCATGTGGTCTGTGGCTCCTGA
Found at i:21964553 original size:23 final size:25
Alignment explanation
Indices: 21964498--21964556 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
21964488 AAAGGGTTCG
* * *
21964498 GCAATGAAGGCCTAAACAGGATTCG
1 GCAATGAAGGCCTAAACAGAAGTCA
21964523 GCAATGAAGGCCTAAA-A-AAGTCA
1 GCAATGAAGGCCTAAACAGAAGTCA
21964546 GCAATGAAGGC
1 GCAATGAAGGC
21964557 TGAAAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 14 0.45
24 1 0.03
25 16 0.52
ACGTcount: A:0.41, C:0.19, G:0.27, T:0.14
Consensus pattern (25 bp):
GCAATGAAGGCCTAAACAGAAGTCA
Found at i:21964733 original size:22 final size:22
Alignment explanation
Indices: 21964705--21964748 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
21964695 CTAAATCTTC
*
21964705 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21964727 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
21964749 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:21967235 original size:25 final size:24
Alignment explanation
Indices: 21967197--21967255 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 24
21967187 TGTAGAAATC
*
21967197 TGATTCTCCGACATTAGTACAGAT
1 TGATTCTCCTACATTAGTACAGAT
* *
21967221 ATGATTCTCCTACATTAGTGCAGCT
1 -TGATTCTCCTACATTAGTACAGAT
21967246 TGATT-TCCTA
1 TGATTCTCCTA
21967256 ATTTATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 5 0.16
24 5 0.16
25 21 0.68
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.37
Consensus pattern (24 bp):
TGATTCTCCTACATTAGTACAGAT
Found at i:21971657 original size:15 final size:15
Alignment explanation
Indices: 21971629--21971670 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
21971619 CTCTTCCCCC
21971629 TCCATTCTCTCTCTTT
1 TCCATTC-CTCTCTTT
21971645 TCCATTCCTCTCTTT
1 TCCATTCCTCTCTTT
*
21971660 CCCTATTCCTC
1 TCC-ATTCCTC
21971671 CAATTTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.07, C:0.43, G:0.00, T:0.50
Consensus pattern (15 bp):
TCCATTCCTCTCTTT
Found at i:21978839 original size:114 final size:113
Alignment explanation
Indices: 21978681--21978905 Score: 279
Period size: 114 Copynumber: 2.0 Consensus size: 113
21978671 CTTCTAAAAC
* * * **
21978681 AACAAGCATACAAAAAAGAGAATCCATAGCTAACTTTAAGATTGTCAATAGTATGCAATTACAAG
1 AACAAGCATACAAAAAAGAGAATCAACAGCTAACTTTAAAATTGTCAATAAAATGCAATTACAAG
* *
21978746 GCCACTCTAACAAATAATCAATTGTTTTAATACCTCATTCAAACTTAAT
66 GCAACTCTAACAAATAATCAATT-TTTTAATAACTCATTCAAACTTAAT
* ** * * *
21978795 AACAAGCATACAAAAAAGAGCATCAACCTCTAAGTTTAAAATTGTCGATAAAATGCAATTATAAG
1 AACAAGCATACAAAAAAGAGAATCAACAGCTAACTTTAAAATTGTCAATAAAATGCAATTACAAG
* * * **
21978860 GTAATTCTAACAAATAATCAGTTTTTTTTTAACTCATTCAAACTTA
66 GCAACTCTAACAAATAATCAATTTTTTAATAACTCATTCAAACTTA
21978906 GCAACCAGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
113 20 0.22
114 73 0.78
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (113 bp):
AACAAGCATACAAAAAAGAGAATCAACAGCTAACTTTAAAATTGTCAATAAAATGCAATTACAAG
GCAACTCTAACAAATAATCAATTTTTTAATAACTCATTCAAACTTAAT
Found at i:21980465 original size:13 final size:13
Alignment explanation
Indices: 21980449--21980480 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
21980439 ACTATTTTGG
*
21980449 AAAATAAAAATAA
1 AAAATAAAAACAA
21980462 AAAATAAAAACAA
1 AAAATAAAAACAA
21980475 AAAATA
1 AAAATA
21980481 TTTTCTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAATAAAAACAA
Found at i:21985962 original size:21 final size:21
Alignment explanation
Indices: 21985918--21985965 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
21985908 CCACTAATTT
*
21985918 TAATCTTACCATTACAGCATC
1 TAATCTTACCATTACAGCAAC
* * *
21985939 TAATCTTACTATTATAGTAAC
1 TAATCTTACCATTACAGCAAC
21985960 TAATCT
1 TAATCT
21985966 CGCTACTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (21 bp):
TAATCTTACCATTACAGCAAC
Found at i:21989067 original size:20 final size:21
Alignment explanation
Indices: 21989042--21989111 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 21
21989032 TTTAAATAGT
*
21989042 AATATTAACATA-ATTATTAA
1 AATATTAAAATATATTATTAA
21989062 AATATTAAAAATATTATTATTAA
1 AATATT-AAAATA-TATTATTAA
21989085 AATATTAGAAAATATTTATTATTAA
1 AATATT--AAAATA--TATTATTAA
21989110 AA
1 AA
21989112 ACTTGGAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
20 6 0.14
21 5 0.12
23 14 0.33
24 6 0.14
25 12 0.28
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (21 bp):
AATATTAAAATATATTATTAA
Found at i:21989083 original size:35 final size:33
Alignment explanation
Indices: 21989035--21989100 Score: 78
Period size: 35 Copynumber: 1.9 Consensus size: 33
21989025 TTCTTTTTTT
* *
21989035 AAATAGTAATATTAACATAATTATTAAAATATTAA
1 AAATAGTAATATTAAAAT-ATTA-GAAAATATTAA
* *
21989070 AAATATTATTATTAAAATATTAGAAAATATT
1 AAATAGTAATATTAAAATATTAGAAAATATT
21989101 TATTATTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 8 0.30
34 4 0.15
35 15 0.56
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (33 bp):
AAATAGTAATATTAAAATATTAGAAAATATTAA
Found at i:21989121 original size:24 final size:25
Alignment explanation
Indices: 21989054--21989138 Score: 106
Period size: 24 Copynumber: 3.5 Consensus size: 25
21989044 TATTAACATA
21989054 ATTATTAAAATATTA-AAAATA-TT
1 ATTATTAAAATATTAGAAAATATTT
21989077 ATTATTAAAATATTAGAAAATATTT
1 ATTATTAAAATATTAGAAAATATTT
*
21989102 ATTATTAAAA-ACTT-GGAAATATTT
1 ATTATTAAAATA-TTAGAAAATATTT
* *
21989126 ATCATTGAAATAT
1 ATTATTAAAATAT
21989139 GAAAATTACT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
23 15 0.27
24 25 0.45
25 15 0.27
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (25 bp):
ATTATTAAAATATTAGAAAATATTT
Done.