Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 14 of 113
Found at i:4509486 original size:58 final size:58
Alignment explanation
Indices: 4509107--4510010 Score: 522
Period size: 58 Copynumber: 15.3 Consensus size: 58
4509097 GCCTTTATTC
* *
4509107 AAGAAAAATTAATACTTTCAAC-TTTTCTTTAAAAAAATATTTTTT-AAAATTTTT-TCTTTT
1 AAGAAAAATTGATACTTTCAACTTTTTC-TT---AAAATGTTTTTTCAAAATTTTTAT-TTTT
* ** ** * * * * *
4509167 AAAAAAAATTGATACACTCAACTTTTCCTCCAAAAATATCTATTGAAAA-TTTTATCTTT
1 AAGAAAAATTGATACTTTCAACTTTT--TCTTAAAATGTTTTTTCAAAATTTTTATTTTT
* *
4509226 AA-AGAAAATTGATACTTTCAAC-TTTTCTTCAAAAAAATATTTTTT-GAAATTTTTATTTCTT
1 AAGA-AAAATTGATACTTTCAACTTTTTCTT----AAAATGTTTTTTCAAAATTTTTATTT-TT
* * * * * * ** *
4509287 AA-AAAAATTTATAC-TCCTAACTTTTTCTCAAAAAATATCTTTTGAAAA-TTTTATCATC
1 AAGAAAAATTGATACTTTC-AACTTTTTCT--TAAAATGTTTTTTCAAAATTTTTATTTTT
* * * *
4509345 AAGAAAAATTCATACTTTCAACTTTTTCTCAAAAAAATATTTTTTTAAAA-TTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTTCT---TAAAATGTTTTTTCAAAATTTTTATTTTT
* *
4509405 GAGAAAAATTGATACTTTTAACTTTATT-TTAAAATGTTTTTTCAAAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTT-TTCTTAAAATGTTTTTTCAAAATTTTTATTTTT
* * * *
4509463 AA-AGAAAATTAATATTTTCAACTTTTTCCTAAAGCAT-TTTTTT-GAAATTTTTATTTTT
1 AAGA-AAAATTGATACTTTCAACTTTTTCTTAAA--ATGTTTTTTCAAAATTTTTATTTTT
* * **
4509521 AAGAAAAATTTATGCTTTCAACTTTTTCTTAAAGCGTTTTTT-----TTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTTCTTAAAATGTTTTTTCAAAATTTTTATTTTT
* * * *
4509574 AAGAAAAATTGATACTTTTAAC-TTTTCTTTGAAATG-TTTTTCTGAAATTTTTATATTT
1 AAGAAAAATTGATACTTTCAACTTTTTC-TTAAAATGTTTTTTC-AAAATTTTTATTTTT
* * **
4509632 AAGAAAAATTGATACTTTTAAC-TTCTCATTAAAATGTTTTTTTTGAAATTTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTTC-TTAAAATG-TTTTTTCAAAATTTTTATTTTT
* * * *
4509691 AAGAAAAATTGATACTTTCAACTTTTTCCTAAAGTTTTTTTTTTGAAAA-TTTTATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTTCTTAAA--ATGTTTTTTCAAAATTTTTATTTTT
* * **
4509750 AACG-AAAATTGATAC-TTCAACTTTTGCTTAAATGGTGTTTTTTTTTTTTTTTGAAATTTTTAT
1 AA-GAAAAATTGATACTTTCAACTTTTTCTTAAA--ATG--------TTTTTTCAAAATTTTTAT
*
4509813 TTTC
55 TTTT
* * *
4509817 AA-AGTAAATTGATACTTTCAACTTTTTCCTAAAATTTTTTTTCAAAATTTTTATTTTT
1 AAGA-AAAATTGATACTTTCAACTTTTTCTTAAAATGTTTTTTCAAAATTTTTATTTTT
* * * *
4509875 AAGGAAAATTGATACTTTCAACTTTTCCTTAAGGTAAT-TTTTTT---TATTTTTATTTTA
1 AAGAAAAATTGATACTTTCAACTTTTTCTTAA---AATGTTTTTTCAAAATTTTTATTTTT
* * * * * * ** *
4509932 AAG-AAATTTTATATTTTTAACTTTTCCTAAAAATGTTTTTTTTGAAATTTTAATTTTT
1 AAGAAAAATTGATACTTTCAACTTTTTCTTAAAATG-TTTTTTCAAAATTTTTATTTTT
* *
4509990 CACGAAAAATTAATACTTTCA
1 -AAGAAAAATTGATACTTTCA
4510011 GTTTTTCCTA
Statistics
Matches: 674, Mismatches: 106, Indels: 128
0.74 0.12 0.14
Matches are distributed among these distances:
52 10 0.01
53 38 0.06
55 6 0.01
56 25 0.04
57 38 0.06
58 196 0.29
59 149 0.22
60 144 0.21
61 20 0.03
63 2 0.00
66 10 0.01
67 21 0.03
68 15 0.02
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.50
Consensus pattern (58 bp):
AAGAAAAATTGATACTTTCAACTTTTTCTTAAAATGTTTTTTCAAAATTTTTATTTTT
Found at i:4509611 original size:169 final size:168
Alignment explanation
Indices: 4509395--4509734 Score: 460
Period size: 169 Copynumber: 2.0 Consensus size: 168
4509385 TTTTTTAAAA
*
4509395 TTTTATTTTTGAGAAAAATTGATACTTTTAACTTTATTTTAAAATGTTTTT-TCAAAATTTTTAT
1 TTTTATTTTTAAGAAAAATTGATACTTTTAACTTTATTTTAAAATGTTTTTCT-AAAATTTTTAT
* *
4509459 TTTTAA-AGAAAATTAATA-TTTTCAACTTTTTC-CT-AAA-GCATTTTTTTGAAATTTTTATTT
65 ATTTAAGA-AAAATTAATACTTTT-AAC-TTCTCACTAAAATG-ATTTTTTTGAAATTTTTATTT
* * *
4509519 TTAAGAAAAATTTATGCTTTCAACTTTTTCTTAAAGCGTTTTTTT
126 TTAAGAAAAATTGATACTTTCAACTTTTTCCTAAA--GTTTTTTT
* *
4509564 TTTTATTTTTAAGAAAAATTGATACTTTTAACTTT-TCTTTGAAATGTTTTTCTGAAATTTTTAT
1 TTTTATTTTTAAGAAAAATTGATACTTTTAACTTTAT-TTTAAAATGTTTTTCTAAAATTTTTAT
* * *
4509628 ATTTAAGAAAAATTGATACTTTTAACTTCTCATTAAAATGTTTTTTTTGAAATTTTTATTTTTAA
65 ATTTAAGAAAAATTAATACTTTTAACTTCTCACTAAAATGATTTTTTTGAAATTTTTATTTTTAA
4509693 GAAAAATTGATACTTTCAACTTTTTCCTAAAGTTTTTTT
130 GAAAAATTGATACTTTCAACTTTTTCCTAAAGTTTTTTT
4509732 TTT
1 TTT
4509735 GAAAATTTTA
Statistics
Matches: 153, Mismatches: 11, Indels: 15
0.85 0.06 0.08
Matches are distributed among these distances:
168 16 0.10
169 75 0.49
170 61 0.40
171 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.54
Consensus pattern (168 bp):
TTTTATTTTTAAGAAAAATTGATACTTTTAACTTTATTTTAAAATGTTTTTCTAAAATTTTTATA
TTTAAGAAAAATTAATACTTTTAACTTCTCACTAAAATGATTTTTTTGAAATTTTTATTTTTAAG
AAAAATTGATACTTTCAACTTTTTCCTAAAGTTTTTTT
Found at i:4509840 original size:126 final size:126
Alignment explanation
Indices: 4509668--4509906 Score: 376
Period size: 126 Copynumber: 1.9 Consensus size: 126
4509658 CATTAAAATG
* *
4509668 TTTTTTTTGAAATTTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCCTAAAGTTTTTTTT
1 TTTTTTTTGAAATTTTTATTTTAAAGAAAAATTGATACTTTCAACTTTTTCCTAAA--ATTTTTT
* *
4509733 TTGAAAA-TTTTATTTTTAACGAAAATTGATAC-TTCAACTTTTGCTTAAATGGTGTTTTTTT
64 TTCAAAATTTTTATTTTTAACGAAAATTGATACTTTCAACTTTTCCTTAAATGGTGTTTTTTT
*
4509794 TTTTTTTTGAAATTTTTATTTTCAAAG-TAAATTGATACTTTCAACTTTTTCCTAAAATTTTTTT
1 TTTTTTTTGAAATTTTTATTTT-AAAGAAAAATTGATACTTTCAACTTTTTCCTAAAATTTTTTT
*
4509858 TCAAAATTTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTTAA
65 TCAAAATTTTTATTTTTAACGAAAATTGATACTTTCAACTTTTCCTTAA
4509907 GGTAATTTTT
Statistics
Matches: 104, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
124 12 0.12
125 24 0.23
126 65 0.62
127 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.54
Consensus pattern (126 bp):
TTTTTTTTGAAATTTTTATTTTAAAGAAAAATTGATACTTTCAACTTTTTCCTAAAATTTTTTTT
CAAAATTTTTATTTTTAACGAAAATTGATACTTTCAACTTTTCCTTAAATGGTGTTTTTTT
Found at i:4509858 original size:67 final size:66
Alignment explanation
Indices: 4509725--4509858 Score: 173
Period size: 67 Copynumber: 2.0 Consensus size: 66
4509715 TTTCCTAAAG
* * * *
4509725 TTTTTTTTTTGAAAATTTTATTTTTAACGAAAATTGATACTTCAACTTTTGCTTAAATGGTGTTT
1 TTTTTTTTTTGAAAATTTTATTTTCAAAGAAAATTGATACTTCAACTTTTCCTAAAAT-GTGTTT
4509790 TT
65 TT
* *
4509792 TTTTTTTTTTGAAATTTTTATTTTCAAAGTAAATTGATACTTTCAACTTTTTCCTAAAAT-T-TT
1 TTTTTTTTTTGAAAATTTTATTTTCAAAGAAAATTGATAC-TTCAAC-TTTTCCTAAAATGTGTT
4509855 TTT
64 TTT
4509858 T
1 T
4509859 CAAAATTTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
66 6 0.10
67 37 0.63
68 6 0.10
69 10 0.17
ACGTcount: A:0.27, C:0.08, G:0.07, T:0.57
Consensus pattern (66 bp):
TTTTTTTTTTGAAAATTTTATTTTCAAAGAAAATTGATACTTCAACTTTTCCTAAAATGTGTTTT
T
Found at i:4510031 original size:115 final size:115
Alignment explanation
Indices: 4509350--4510037 Score: 362
Period size: 111 Copynumber: 5.9 Consensus size: 115
4509340 TCATCAAGAA
* * *
4509350 AAATTCATACTTTCAACTTTTTCTCAAAAAAATATTTTTTT-AAAATTTT-ATTTTTGAGAAAAA
1 AAATTGATACTTTCAACTTTTTC-C--TAAAAT-TTTTTTTCAAAATTTTAATTTTTAAGAAAAA
* * * ** ** * *
4509413 TTGATACTTTTAACTTTAT-TTTAA-AATGTTTTTTCAAAATTTTTATTTTTAAAGA
62 TTAATACTTTCAACTTT-TCCTTAAGAAAATTTTTT--TTATTTTTATTTTCAAAGT
* * * *
4509468 AAATTAATATTTTCAACTTTTTCCTAAAGCA-TTTTTTT-GAAATTTTTATTTTTAAGAAAAATT
1 AAATTGATACTTTCAACTTTTTCCTAAA--ATTTTTTTTCAAAATTTTAATTTTTAAGAAAAATT
* * * *** * *
4509531 TATGCTTTCAACTTTTTCTT---AAAGCGTTTTTT-TTTTTATTTT-TAAGAA
64 AATACTTTCAACTTTTCCTTAAGAAAATTTTTTTTATTTTTATTTTCAAAG-T
* * * * * * *
4509579 AAATTGATACTTTTAAC-TTTTCTTTGAAA-TGTTTTTCTGAAATTTTTATATTTAAGAAAAATT
1 AAATTGATACTTTCAACTTTTTC-CTAAAATTTTTTTTC-AAAATTTTAATTTTTAAGAAAAATT
* * * * ** * *
4509642 GATACTTTTAACTTCTCATTAA-AATGTTTTTTTTGAAATTTTTATTTT-TAAGAA
64 AATACTTTCAACTTTTCCTTAAGAAAATTTTTTTT---ATTTTTATTTTCAAAG-T
* *
4509696 AAATTGATACTTTCAACTTTTTCCTAAAGTTTTTTTTTTGAAAATTTT-ATTTTTAACG-AAAAT
1 AAATTGATACTTTCAACTTTTTCCTAAA--ATTTTTTTTCAAAATTTTAATTTTTAA-GAAAAAT
* * ****
4509759 TGATAC-TTCAACTTTTGCTTAAATGGTGTTTTTTTTTTTTTTTGAAATTTTTATTTTCAAAGT
63 TAATACTTTCAACTTTTCCTT-AA----G---AAAATTTTTTTT---ATTTTTATTTTCAAAGT
* * *
4509822 AAATTGATACTTTCAACTTTTTCCTAAAATTTTTTTTCAAAATTTTTATTTTTAAGGAAAATTGA
1 AAATTGATACTTTCAACTTTTTCCTAAAATTTTTTTTCAAAATTTTAATTTTTAAGAAAAATTAA
**
4509887 TACTTTCAACTTTTCCTTAAGGTAATTTTTTTTATTTTTATTTT-AAAG-
66 TACTTTCAACTTTTCCTTAAGAAAATTTTTTTTATTTTTATTTTCAAAGT
* * * ** *
4509935 AAATTTTATATTTTTAAC-TTTTCCTAAAAATGTTTTTTTTGAAATTTTAATTTTTCACGAAAAA
1 AAA-TTGATACTTTCAACTTTTTCCT-AAAAT-TTTTTTTCAAAATTTTAATTTTT-AAGAAAAA
**
4509999 TTAATACTTTCAGTTTTTCC-T-AGAAAATTTTTTTT-TTTT
62 TTAATACTTTCAACTTTTCCTTAAGAAAATTTTTTTTATTTT
4510038 ATCATTTCAA
Statistics
Matches: 467, Mismatches: 67, Indels: 77
0.76 0.11 0.13
Matches are distributed among these distances:
109 7 0.01
110 8 0.02
111 66 0.14
113 23 0.05
114 39 0.08
115 50 0.11
116 52 0.11
117 47 0.10
118 55 0.12
119 8 0.02
120 6 0.01
121 1 0.00
124 17 0.04
125 21 0.04
126 64 0.14
127 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.53
Consensus pattern (115 bp):
AAATTGATACTTTCAACTTTTTCCTAAAATTTTTTTTCAAAATTTTAATTTTTAAGAAAAATTAA
TACTTTCAACTTTTCCTTAAGAAAATTTTTTTTATTTTTATTTTCAAAGT
Found at i:4526352 original size:21 final size:21
Alignment explanation
Indices: 4526326--4526365 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
4526316 AGATTGGGCC
4526326 GCGGAGGATGCTTTTGCTGCT
1 GCGGAGGATGCTTTTGCTGCT
4526347 GCGGAGGATGCTTTTGCTG
1 GCGGAGGATGCTTTTGCTG
4526366 AAAAGTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.17, G:0.40, T:0.33
Consensus pattern (21 bp):
GCGGAGGATGCTTTTGCTGCT
Found at i:4531566 original size:27 final size:27
Alignment explanation
Indices: 4531528--4531582 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
4531518 TTTGGATTTT
*
4531528 ATTGTTTGATATTTGAGGTTCTTAATG
1 ATTGTTTGATATTTGAGATTCTTAATG
4531555 ATTGTTTGATATTTGAGATTCTTAATG
1 ATTGTTTGATATTTGAGATTCTTAATG
4531582 A
1 A
4531583 CCCCCATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.04, G:0.20, T:0.51
Consensus pattern (27 bp):
ATTGTTTGATATTTGAGATTCTTAATG
Found at i:4547380 original size:15 final size:13
Alignment explanation
Indices: 4547348--4547389 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
4547338 AAAATTTATC
*
4547348 AAAATTTATATTA
1 AAAATATATATTA
4547361 AAAATATATATCTA
1 AAAATATATAT-TA
*
4547375 AAAA-ATATATCA
1 AAAATATATATTA
4547387 AAA
1 AAA
4547390 TTTATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 16 0.62
14 6 0.23
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (13 bp):
AAAATATATATTA
Found at i:4549442 original size:19 final size:21
Alignment explanation
Indices: 4549406--4549447 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
4549396 TAACGAGATC
*
4549406 TTTTAATTTATCAATTTTGAT
1 TTTTAATTTATCAATTTTCAT
4549427 TTTTAATTT-T-AATTTTCAT
1 TTTTAATTTATCAATTTTCAT
4549446 TT
1 TT
4549448 CATTATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 1 0.05
21 9 0.45
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTAATTTATCAATTTTCAT
Found at i:4552035 original size:32 final size:32
Alignment explanation
Indices: 4551996--4552068 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
4551986 AGCGTGATTA
4551996 ATTTTAAATGATAATATATGA-TAATAAATAAAT
1 ATTTTAAAT-ATAATAT-TGATTAATAAATAAAT
* * *
4552029 -TTTTAAATATCATATTTATTAATAAATTAAT
1 ATTTTAAATATAATATTGATTAATAAATAAAT
4552060 ATTTTAAAT
1 ATTTTAAAT
4552069 TTTAAATATC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 2 0.06
31 17 0.49
32 16 0.46
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (32 bp):
ATTTTAAATATAATATTGATTAATAAATAAAT
Found at i:4552538 original size:29 final size:29
Alignment explanation
Indices: 4552474--4552541 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
4552464 TTTATTTAAA
* *
4552474 ATAAAATTTTATTTGATACAAATTAAAAT
1 ATAAAAATTTATTTGATACAAATAAAAAT
* *
4552503 ATGAAAATTTATTTGGATA-TAATAAAAAT
1 ATAAAAATTTATTT-GATACAAATAAAAAT
4552532 ATAAAAATTT
1 ATAAAAATTT
4552542 CTTTAAAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.53, C:0.01, G:0.06, T:0.40
Consensus pattern (29 bp):
ATAAAAATTTATTTGATACAAATAAAAAT
Found at i:4553887 original size:8 final size:8
Alignment explanation
Indices: 4553874--4553914 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
4553864 TAAGAAAACG
4553874 ATTACTTC
1 ATTACTTC
4553882 ATTACTTC
1 ATTACTTC
4553890 ATT--TTC
1 ATTACTTC
4553896 ATTACTTC
1 ATTACTTC
4553904 ATT--TTC
1 ATTACTTC
4553910 ATTAC
1 ATTAC
4553915 ATGAACTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
6 12 0.41
8 17 0.59
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.54
Consensus pattern (8 bp):
ATTACTTC
Found at i:4553898 original size:14 final size:14
Alignment explanation
Indices: 4553879--4553914 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
4553869 AAACGATTAC
4553879 TTCATTACTTCATT
1 TTCATTACTTCATT
4553893 TTCATTACTTCATT
1 TTCATTACTTCATT
4553907 TTCATTAC
1 TTCATTAC
4553915 ATGAACTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (14 bp):
TTCATTACTTCATT
Found at i:4565752 original size:17 final size:18
Alignment explanation
Indices: 4565712--4565752 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
4565702 AAGATAATAT
* *
4565712 AATTTATTTATTGATCAA
1 AATTTATTTATTCATAAA
4565730 AA-TTATTT-TTCATAAA
1 AATTTATTTATTCATAAA
4565746 AATTTAT
1 AATTTAT
4565753 ATAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 8 0.40
17 10 0.50
18 2 0.10
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.51
Consensus pattern (18 bp):
AATTTATTTATTCATAAA
Found at i:4567457 original size:27 final size:27
Alignment explanation
Indices: 4567422--4567482 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
4567412 CACCATAACT
* *
4567422 ACCATCAATTCGAACAC-CATCCTAGCC
1 ACCAGCAATTCGAAC-CTCAGCCTAGCC
4567449 ACCAGCAATTCGAACCTCAGCCTAGCC
1 ACCAGCAATTCGAACCTCAGCCTAGCC
*
4567476 ATCAGCA
1 ACCAGCA
4567483 CCACTTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.33, C:0.39, G:0.11, T:0.16
Consensus pattern (27 bp):
ACCAGCAATTCGAACCTCAGCCTAGCC
Found at i:4574207 original size:31 final size:31
Alignment explanation
Indices: 4574135--4574208 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
4574125 TTGATTTATA
**
4574135 TTAAAGG-TTTATTTATTTATAAATTAAAAG
1 TTAAAGGATTTATTTAGATATAAATTAAAAG
** *
4574165 TTAAAAAATTTATTTGGATATAAATTAAAAG
1 TTAAAGGATTTATTTAGATATAAATTAAAAG
4574196 TTAAAGGATTTAT
1 TTAAAGGATTTAT
4574209 ATGAGTGTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 5 0.14
31 31 0.86
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (31 bp):
TTAAAGGATTTATTTAGATATAAATTAAAAG
Found at i:4574220 original size:31 final size:31
Alignment explanation
Indices: 4574152--4574228 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
4574142 TTTATTTATT
*
4574152 TATAAATTAAAAGTTAAAAAATTTATTTGGA
1 TATAAATTAAAAGTTAAAAAATTTATATGGA
**
4574183 TATAAATTAAAAGTTAAAGGATTTATAT-GA
1 TATAAATTAAAAGTTAAAAAATTTATATGGA
*
4574213 GTGTAAATTGAAAAGT
1 -TATAAATT-AAAAGT
4574229 AAGGTTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
30 2 0.05
31 32 0.80
32 6 0.15
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.36
Consensus pattern (31 bp):
TATAAATTAAAAGTTAAAAAATTTATATGGA
Found at i:4585036 original size:22 final size:23
Alignment explanation
Indices: 4585008--4585051 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
4584998 GTAGGATTCA
*
4585008 AAACACTATAGATAC-AAAAAAT
1 AAACACTACAGATACGAAAAAAT
4585030 AAACACTACAGATACGAAAAAA
1 AAACACTACAGATACGAAAAAA
4585052 AAAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.64, C:0.16, G:0.07, T:0.14
Consensus pattern (23 bp):
AAACACTACAGATACGAAAAAAT
Found at i:4586465 original size:14 final size:16
Alignment explanation
Indices: 4586446--4586478 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4586436 GAGGAACGAT
4586446 AAGGAA-AG-GATGAA
1 AAGGAAGAGAGATGAA
4586460 AAGGAAGAGAGATGAA
1 AAGGAAGAGAGATGAA
4586476 AAG
1 AAG
4586479 ACAGATTACG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 2 0.12
16 9 0.53
ACGTcount: A:0.58, C:0.00, G:0.36, T:0.06
Consensus pattern (16 bp):
AAGGAAGAGAGATGAA
Found at i:4587217 original size:16 final size:14
Alignment explanation
Indices: 4587190--4587237 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
4587180 CTGATATAAC
4587190 TATAATTAAATATT
1 TATAATTAAATATT
4587204 TATAATATATAATATAT
1 TATAAT-TA-AATAT-T
*
4587221 T-TTATTAAATATT
1 TATAATTAAATATT
4587234 TATA
1 TATA
4587238 TCACATTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 2 0.07
14 12 0.43
15 4 0.14
16 8 0.29
17 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATAATTAAATATT
Found at i:4587253 original size:30 final size:30
Alignment explanation
Indices: 4587194--4587254 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
4587184 TATAACTATA
* *
4587194 ATTAAATATTTATAATATATAATATATTTT
1 ATTAAATATTTATAACATATAATACATTTT
4587224 ATTAAATATTTATATCACAT-TAAT-CATTTT
1 ATTAAATATTTATA--ACATATAATACATTTT
4587254 A
1 A
4587255 CGAAAGTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 20 0.74
31 4 0.15
32 3 0.11
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (30 bp):
ATTAAATATTTATAACATATAATACATTTT
Found at i:4587413 original size:22 final size:23
Alignment explanation
Indices: 4587369--4587413 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
4587359 AAGAGCTCAT
4587369 TTATATATTAATCATTTTATTTTC
1 TTATATATT-ATCATTTTATTTTC
4587393 TTATATATT-TCAATTTT-TTTT
1 TTATATATTATC-ATTTTATTTT
4587414 ACTTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 5 0.25
24 9 0.45
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (23 bp):
TTATATATTATCATTTTATTTTC
Found at i:4588725 original size:24 final size:24
Alignment explanation
Indices: 4588696--4588747 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
4588686 AAATATTCGC
4588696 AAAAT-ATGAGGCAATGCAAAACAG
1 AAAATAATGAGGCAATG-AAAACAG
*
4588720 AAAATAATGGGGCAATGAAAACAG
1 AAAATAATGAGGCAATGAAAACAG
4588744 AAAA
1 AAAA
4588748 CTTCAAGAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.58, C:0.10, G:0.21, T:0.12
Consensus pattern (24 bp):
AAAATAATGAGGCAATGAAAACAG
Found at i:4592206 original size:24 final size:25
Alignment explanation
Indices: 4592178--4592228 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
4592168 TTGAAATTTC
*
4592178 ATATTAA-AAATAATT-TAATAAAAA
1 ATATTAACAAA-AATTCAAATAAAAA
4592202 ATATTAACAAAAATTCAAATAAAAA
1 ATATTAACAAAAATTCAAATAAAAA
4592227 AT
1 AT
4592229 TGATATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
ATATTAACAAAAATTCAAATAAAAA
Found at i:4593782 original size:3 final size:3
Alignment explanation
Indices: 4593774--4593798 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4593764 TCTTTTATTC
4593774 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
4593799 CACGGGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4601960 original size:2 final size:2
Alignment explanation
Indices: 4601955--4601982 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4601945 TTATATAAAA
4601955 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4601983 GGTGATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4612206 original size:38 final size:39
Alignment explanation
Indices: 4612163--4612259 Score: 108
Period size: 38 Copynumber: 2.5 Consensus size: 39
4612153 AATTAATAAC
* *
4612163 AAGAAAATTATCATGTTTACTTA-TAAAAA-AAATAAGGA
1 AAGAAAATTATCATGTTTACTTACCAAAAAGAAA-AAAGA
* * *
4612201 AAGAAAATTGTCATTTTTATTTACCCAAAAAGAAAAAAGA
1 AAGAAAATTATCATGTTTACTTA-CCAAAAAGAAAAAAGA
4612241 AATGAAAATTATCATGTTT
1 AA-GAAAATTATCATGTTT
4612260 CAAATATCAA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 20 0.42
40 11 0.23
41 17 0.35
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (39 bp):
AAGAAAATTATCATGTTTACTTACCAAAAAGAAAAAAGA
Found at i:4615315 original size:21 final size:22
Alignment explanation
Indices: 4615278--4615319 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
4615268 AAGCTTTGCT
4615278 AATGAACACTAAAAACAGCTAA
1 AATGAACACTAAAAACAGCTAA
*
4615300 AATGAACAC-GAAAACAGCTA
1 AATGAACACTAAAAACAGCTA
4615320 CAATCCATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.57, C:0.19, G:0.12, T:0.12
Consensus pattern (22 bp):
AATGAACACTAAAAACAGCTAA
Found at i:4631524 original size:2 final size:2
Alignment explanation
Indices: 4631517--4631554 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
4631507 AAGTGTTCCC
*
4631517 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4631555 CGGTGTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4637007 original size:19 final size:19
Alignment explanation
Indices: 4636983--4637045 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
4636973 AAGATCTTCA
4636983 TGAAGGACGATGAATACTT
1 TGAAGGACGATGAATACTT
*
4637002 TGAAGG--GA-GAAGATCTT
1 TGAAGGACGATGAATA-CTT
4637019 CATGAAGGACGATGAATACTT
1 --TGAAGGACGATGAATACTT
4637040 TGAAGG
1 TGAAGG
4637046 GAGAGTAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
16 4 0.11
17 5 0.14
19 18 0.50
21 5 0.14
22 4 0.11
ACGTcount: A:0.37, C:0.10, G:0.30, T:0.24
Consensus pattern (19 bp):
TGAAGGACGATGAATACTT
Found at i:4637023 original size:38 final size:38
Alignment explanation
Indices: 4636972--4637049 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
4636962 AGTTTCCTCT
4636972 GAAGATCTTCATGAAGGACGATGAATACTTTGAAGGGA
1 GAAGATCTTCATGAAGGACGATGAATACTTTGAAGGGA
4637010 GAAGATCTTCATGAAGGACGATGAATACTTTGAAGGGA
1 GAAGATCTTCATGAAGGACGATGAATACTTTGAAGGGA
4637048 GA
1 GA
4637050 GTAAGTGAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.23
Consensus pattern (38 bp):
GAAGATCTTCATGAAGGACGATGAATACTTTGAAGGGA
Found at i:4649529 original size:99 final size:99
Alignment explanation
Indices: 4649358--4649537 Score: 306
Period size: 99 Copynumber: 1.8 Consensus size: 99
4649348 AAATTCACAA
* * * *
4649358 TGCATGCCCGAGTCTTGGAGTCATGTGGGTCGGAGCTTAACTCTTGATTTGTGACAAGTGGTATT
1 TGCATGCCCGAGTCTTGGAGTCACGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
*
4649423 AGAGTGAGTCTTAAACTATTTAATATACGTCAAG
66 AGAGTGAGCCTTAAACTATTTAATATACGTCAAG
*
4649457 TGCATGCCCGAGTCTTGGAGTCGCGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
1 TGCATGCCCGAGTCTTGGAGTCACGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
4649522 AGAGTGAGCCTTAAAC
66 AGAGTGAGCCTTAAAC
4649538 CGTTCAATCT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 75 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (99 bp):
TGCATGCCCGAGTCTTGGAGTCACGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
AGAGTGAGCCTTAAACTATTTAATATACGTCAAG
Found at i:4649558 original size:99 final size:99
Alignment explanation
Indices: 4649358--4649558 Score: 294
Period size: 99 Copynumber: 2.0 Consensus size: 99
4649348 AAATTCACAA
* * * *
4649358 TGCATGCCCGAGTCTTGGAGTCATGTGGGTCGGAGCTTAACTCTTGATTTGTGACAAGTGGTATT
1 TGCATGCCCGAGTCTTGGAGTCACGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
* * * *
4649423 AGAGTGAGTCTTAAACTATTTAATATACGTCAAG
66 AGAGTGAGCCTTAAACCATTCAATATACGCCAAG
*
4649457 TGCATGCCCGAGTCTTGGAGTCGCGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
1 TGCATGCCCGAGTCTTGGAGTCACGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
* * *
4649522 AGAGTGAGCCTTAAACCGTTCAATCTACGCCCAG
66 AGAGTGAGCCTTAAACCATTCAATATACGCCAAG
4649556 TGC
1 TGC
4649559 CTCGAGGGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 90 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (99 bp):
TGCATGCCCGAGTCTTGGAGTCACGTGGGTCGAAGCTTAACTCTTGATCTGTGACAAGTGGTATC
AGAGTGAGCCTTAAACCATTCAATATACGCCAAG
Found at i:4650260 original size:63 final size:63
Alignment explanation
Indices: 4650190--4650317 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
4650180 CACTATAATA
4650190 AAGCCATCTAATAAATTTTTAAAAAAGATTTAAGTATTATTATACACTCACCCATGGCAAATC
1 AAGCCATCTAATAAATTTTTAAAAAAGATTTAAGTATTATTATACACTCACCCATGGCAAATC
4650253 AAGCCATCTAATAAATTTTTAAAAAAGATTTAAGTATTATTATACACTCACCCATGGCAAATC
1 AAGCCATCTAATAAATTTTTAAAAAAGATTTAAGTATTATTATACACTCACCCATGGCAAATC
4650316 AA
1 AA
4650318 ACCTCGTTGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (63 bp):
AAGCCATCTAATAAATTTTTAAAAAAGATTTAAGTATTATTATACACTCACCCATGGCAAATC
Found at i:4651502 original size:19 final size:21
Alignment explanation
Indices: 4651472--4651510 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
4651462 TATTTTATTT
4651472 TTATTATTAAATT-AATAAAA
1 TTATTATTAAATTAAATAAAA
4651492 TTATT-TTAAATTAAATAAA
1 TTATTATTAAATTAAATAAA
4651511 TGAAAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTATTATTAAATTAAATAAAA
Found at i:4652505 original size:2 final size:2
Alignment explanation
Indices: 4652498--4652523 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4652488 TCTACTATCA
4652498 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4652524 GTACACAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4655128 original size:35 final size:35
Alignment explanation
Indices: 4655082--4655166 Score: 143
Period size: 35 Copynumber: 2.4 Consensus size: 35
4655072 AAATTAATAG
4655082 ATAAAATATATTAATCAACATAATAATAACAAATT
1 ATAAAATATATTAATCAACATAATAATAACAAATT
4655117 ATAAAATATATTAATCAACATAATAATAACAAATT
1 ATAAAATATATTAATCAACATAATAATAACAAATT
* * *
4655152 AAAAAACATACTAAT
1 ATAAAATATATTAAT
4655167 TTTTTCTCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.29
Consensus pattern (35 bp):
ATAAAATATATTAATCAACATAATAATAACAAATT
Found at i:4656002 original size:18 final size:17
Alignment explanation
Indices: 4655969--4656002 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4655959 AATAACAATT
*
4655969 ATTGCAAATTATTGTTG
1 ATTGCAAATAATTGTTG
4655986 ATTGCAAATAAATTGTT
1 ATTGCAAAT-AATTGTT
4656003 TGAATTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (17 bp):
ATTGCAAATAATTGTTG
Found at i:4658133 original size:2 final size:2
Alignment explanation
Indices: 4658128--4658172 Score: 56
Period size: 2 Copynumber: 22.5 Consensus size: 2
4658118 ATATATATAC
* *
4658128 AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG TTG A- AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG AG AG AG AG AG
4658170 AG A
1 AG A
4658173 ACTATAGACT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
1 1 0.03
2 35 0.95
3 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.49, T:0.04
Consensus pattern (2 bp):
AG
Found at i:4658874 original size:11 final size:11
Alignment explanation
Indices: 4658858--4658890 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
4658848 ATCATATTCA
4658858 TATTATTATTT
1 TATTATTATTT
4658869 TATTA-TATTT
1 TATTATTATTT
*
4658879 TATTATAATTT
1 TATTATTATTT
4658890 T
1 T
4658891 GTATATCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TATTATTATTT
Found at i:4691429 original size:12 final size:12
Alignment explanation
Indices: 4691393--4691431 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
4691383 TCTGTCTACA
*
4691393 TATATATATATA
1 TATATATATATG
*
4691405 TATATATACATG
1 TATATATATATG
*
4691417 TATATATGTATG
1 TATATATATATG
4691429 TAT
1 TAT
4691432 TCGATTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (12 bp):
TATATATATATG
Found at i:4703015 original size:37 final size:37
Alignment explanation
Indices: 4702943--4703019 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
4702933 TTTTAAGTTA
4702943 AATTAAAATGTATCATATTTAATAATTTAAGATAAAT
1 AATTAAAATGTATCATATTTAATAATTTAAGATAAAT
*
4702980 AATTATAAAT-TAT-ATATTTTAGATAATTTTA-ATAAAT
1 AATTA-AAATGTATCATA-TTTA-ATAATTTAAGATAAAT
4703017 AAT
1 AAT
4703020 CATCGATGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
36 3 0.08
37 21 0.58
38 12 0.33
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (37 bp):
AATTAAAATGTATCATATTTAATAATTTAAGATAAAT
Found at i:4705230 original size:82 final size:82
Alignment explanation
Indices: 4705088--4705251 Score: 294
Period size: 82 Copynumber: 2.0 Consensus size: 82
4705078 GGATGGGGAG
*
4705088 AAAAATTAATCATCACAATCAGTAGCACAATCTGCACCAAAAATAAATCACCATCATAATCTTTT
1 AAAAATTAATCATCACAATCACTAGCACAATCTGCACCAAAAATAAATCACCATCATAATCTTTT
4705153 TACGTATTATTATTATT
66 TACGTATTATTATTATT
*
4705170 AAAAATTAATCATCACAATCACTAGCACAAT-TCGCACCAAAAATAAATCACCATCGTAATCTTT
1 AAAAATTAATCATCACAATCACTAGCACAATCT-GCACCAAAAATAAATCACCATCATAATCTTT
4705234 TTACGTATTATTATTATT
65 TTACGTATTATTATTATT
4705252 TTTCAATGAA
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
81 1 0.01
82 78 0.99
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (82 bp):
AAAAATTAATCATCACAATCACTAGCACAATCTGCACCAAAAATAAATCACCATCATAATCTTTT
TACGTATTATTATTATT
Found at i:4708473 original size:21 final size:22
Alignment explanation
Indices: 4708432--4708483 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
4708422 ATTAATAAAT
*
4708432 TAAAT-AATATCATTTTATTTA
1 TAAATAAATATCAATTTATTTA
*
4708453 TAAATAAATATTAATTT-TTTA
1 TAAATAAATATCAATTTATTTA
4708474 -AAATAAATAT
1 TAAATAAATAT
4708484 ATAAAATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 10 0.36
21 9 0.32
22 9 0.32
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAATAAATATCAATTTATTTA
Found at i:4708493 original size:20 final size:20
Alignment explanation
Indices: 4708448--4708495 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
4708438 ATATCATTTT
*
4708448 ATTTATAAATAAATATTAATT
1 ATTTA-AAATAAATATTAATA
*
4708469 TTTTAAAATAAATATATAA-A
1 ATTTAAAATAAATAT-TAATA
4708489 ATTTAAA
1 ATTTAAA
4708496 TTTATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTAAAATAAATATTAATA
Found at i:4712149 original size:2 final size:2
Alignment explanation
Indices: 4712142--4712169 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4712132 AATCTCACCA
4712142 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
4712170 ATGTCTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:4726684 original size:138 final size:138
Alignment explanation
Indices: 4726434--4726690 Score: 469
Period size: 138 Copynumber: 1.9 Consensus size: 138
4726424 ATTTGAAACT
*
4726434 CTTGAATCCACAATCCATGAATTTTATTTCTCTAGTTTTACACTTAAGGCACTTAAAAAATTACC
1 CTTGAATCCACAATCCATGAATTTTATTTCTCTAGTTTTACACTTAAAGCACTTAAAAAATTACC
*
4726499 TTTTTGTGCTAAAAAATCTATTCTAATAACGCTAGCTCTAGGTTTAGAGAGGTAGCCCTAGAGCT
66 TTTTTGTGCTAAAAAATCTATTCTAATAACGCTAGCTCTAGGGTTAGAGAGGTAGCCCTAGAGCT
4726564 AGCGTTAC
131 AGCGTTAC
* * *
4726572 CTTGAATCCACAATCCATGAATTTTGTTTCTCTAGTTTTACATTTAAAGCACTTAGAAAATTACC
1 CTTGAATCCACAATCCATGAATTTTATTTCTCTAGTTTTACACTTAAAGCACTTAAAAAATTACC
4726637 TTTTTGTGCTAAAAAATCTATTCTAATAACGCTAGCTCTAGGGTTAGAGAGGTA
66 TTTTTGTGCTAAAAAATCTATTCTAATAACGCTAGCTCTAGGGTTAGAGAGGTA
4726691 ACCTTTGACG
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 114 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (138 bp):
CTTGAATCCACAATCCATGAATTTTATTTCTCTAGTTTTACACTTAAAGCACTTAAAAAATTACC
TTTTTGTGCTAAAAAATCTATTCTAATAACGCTAGCTCTAGGGTTAGAGAGGTAGCCCTAGAGCT
AGCGTTAC
Found at i:4729838 original size:18 final size:18
Alignment explanation
Indices: 4729788--4729827 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4729778 TTTTTAATTA
*
4729788 TTAAATTAA-AAAT-AAT
1 TTAAAATAACAAATAAAT
4729804 TTAAAATAACAAATAAAT
1 TTAAAATAACAAATAAAT
4729822 TTAAAA
1 TTAAAA
4729828 AATATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 4 0.19
18 9 0.43
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
TTAAAATAACAAATAAAT
Found at i:4730054 original size:3 final size:3
Alignment explanation
Indices: 4730046--4730085 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
4730036 TCAGAAAACA
* * *
4730046 AGT AGT AGT AGT AGT AGT AGT GGT GGT GGT AGT AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
4730086 AAACGCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.28, C:0.00, G:0.40, T:0.33
Consensus pattern (3 bp):
AGT
Found at i:4744644 original size:27 final size:27
Alignment explanation
Indices: 4744587--4744645 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
4744577 CTCCAACTTG
* * *
4744587 GGACTAGAAGTACGAATGGTGAGTTTG
1 GGACTAGAAGTACGAATGGTAAGTCTA
*
4744614 GGACTAGAAGTTCGAATGGTCAAG-CTA
1 GGACTAGAAGTACGAATGGT-AAGTCTA
4744641 GGACT
1 GGACT
4744646 TGGAGTGTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.31, C:0.12, G:0.34, T:0.24
Consensus pattern (27 bp):
GGACTAGAAGTACGAATGGTAAGTCTA
Found at i:4750760 original size:19 final size:19
Alignment explanation
Indices: 4750724--4750762 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
4750714 TAATTACAAT
*
4750724 ATTTAAATATTGAAAAAAA
1 ATTTAAATATTCAAAAAAA
*
4750743 ATTTAAATTTTCATAAAAAA
1 ATTTAAATATTCA-AAAAAA
4750763 GAATTTCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (19 bp):
ATTTAAATATTCAAAAAAA
Found at i:4751016 original size:7 final size:7
Alignment explanation
Indices: 4751004--4751046 Score: 59
Period size: 7 Copynumber: 5.9 Consensus size: 7
4750994 ATTATGACAA
4751004 AAAAAAT
1 AAAAAAT
4751011 AAAAAAT
1 AAAAAAT
*
4751018 AGAATAAT
1 A-AAAAAT
4751026 AAAAAACT
1 AAAAAA-T
4751034 AAAAAAT
1 AAAAAAT
4751041 AAAAAA
1 AAAAAA
4751047 GGAAAGCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 19 0.59
8 13 0.41
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (7 bp):
AAAAAAT
Found at i:4751028 original size:15 final size:15
Alignment explanation
Indices: 4751004--4751046 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
4750994 ATTATGACAA
4751004 AAAAAATAAAAAA-T
1 AAAAAATAAAAAACT
*
4751018 AGAATAATAAAAAACT
1 A-AAAAATAAAAAACT
4751034 AAAAAATAAAAAA
1 AAAAAATAAAAAA
4751047 GGAAAGCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 1 0.04
15 22 0.88
16 2 0.08
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (15 bp):
AAAAAATAAAAAACT
Found at i:4752396 original size:24 final size:22
Alignment explanation
Indices: 4752353--4752405 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
4752343 TATGAATAAA
* * *
4752353 TATTTTTATTATTTATTAAATT
1 TATTATTATTAATTAATAAATT
4752375 ATATATATTATTAATTAATAAATT
1 -TAT-TATTATTAATTAATAAATT
4752399 TATTATT
1 TATTATT
4752406 TAAAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 4 0.15
23 6 0.23
24 16 0.62
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTATTATTAATTAATAAATT
Found at i:4752401 original size:16 final size:15
Alignment explanation
Indices: 4752363--4752413 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
4752353 TATTTTTATT
*
4752363 ATTTATTAAATTATAT
1 ATTTATT-AATTATAA
4752379 ATATTATTAATTAATAA
1 AT-TTATTAATT-ATAA
*
4752396 ATTTATTATTTA-AA
1 ATTTATTAATTATAA
4752410 ATTT
1 ATTT
4752414 TAATTTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 6 0.19
15 1 0.03
16 14 0.45
17 10 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTATTAATTATAA
Found at i:4752425 original size:16 final size:18
Alignment explanation
Indices: 4752406--4752448 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
4752396 ATTTATTATT
4752406 TAAAATT-TTA-ATTTAA
1 TAAAATTATTATATTTAA
4752422 TAAAATTATTATATTTATA
1 TAAAATTATTATATTTA-A
*
4752441 TATAATTA
1 TAAAATTA
4752449 AAATATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 7 0.30
17 3 0.13
18 5 0.22
19 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAAAATTATTATATTTAA
Found at i:4752446 original size:24 final size:25
Alignment explanation
Indices: 4752422--4752511 Score: 84
Period size: 25 Copynumber: 3.7 Consensus size: 25
4752412 TTTAATTTAA
*
4752422 TAAAATTATTATATTTATATATAAT
1 TAAAATTATTAAATTTATATATAAT
*
4752447 TAAAA-TA-TAAA-TTATAT-TAAAA
1 TAAAATTATTAAATTTATATAT-AAT
*
4752469 TAATATT-TATAAATATTATAT-TAAT
1 TAAAATTAT-TAAAT-TTATATATAAT
4752494 TAAAATTATTAAATTTAT
1 TAAAATTATTAAATTTAT
4752512 TTTGAGTCAT
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
21 1 0.02
22 12 0.23
23 4 0.08
24 10 0.19
25 18 0.34
26 8 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TAAAATTATTAAATTTATATATAAT
Found at i:4752447 original size:57 final size:53
Alignment explanation
Indices: 4752362--4752512 Score: 137
Period size: 57 Copynumber: 2.8 Consensus size: 53
4752352 ATATTTTTAT
* * **
4752362 TATTTATTAA-ATTATATATATTATTAATTAATAAATTTATTAT-TTAAAATTT
1 TATTTATAAATATTATATTTATTA-TAATTAATAAATTTATTATATTAAAATAA
**
4752414 TAATTTAATAAAATTATTATATTTATATATAATTAA-AATATAAATTATATTAAAATAA
1 T-ATTT-AT-AAA-TATTATATTTAT-TATAATTAATAA-ATTTATTATATTAAAATAA
* * *
4752472 TATTTATAAATATTATATTAATTAAAATTATTAAATTTATT
1 TATTTATAAATATTATATTTATTATAATTAATAAATTTATT
4752513 TTGAGTCATG
Statistics
Matches: 79, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
52 1 0.01
53 16 0.20
54 15 0.19
55 5 0.06
56 4 0.05
57 28 0.35
58 10 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (53 bp):
TATTTATAAATATTATATTTATTATAATTAATAAATTTATTATATTAAAATAA
Found at i:4752501 original size:15 final size:15
Alignment explanation
Indices: 4752436--4752502 Score: 64
Period size: 15 Copynumber: 4.3 Consensus size: 15
4752426 ATTATTATAT
4752436 TTATATATAATTAAAA
1 TTATAT-TAATTAAAA
*
4752452 TATAAATTATATTAAAA
1 T-TATATTA-ATTAAAA
* *
4752469 TAATATTTA-TAAATA
1 TTATATTAATTAAA-A
4752484 TTATATTAATTAAAA
1 TTATATTAATTAAAA
4752499 TTAT
1 TTAT
4752503 TAAATTTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 4 0.10
15 14 0.34
16 11 0.27
17 12 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTATATTAATTAAAA
Found at i:4753157 original size:70 final size:73
Alignment explanation
Indices: 4753025--4753168 Score: 213
Period size: 70 Copynumber: 2.0 Consensus size: 73
4753015 ATATTTGGGT
* *
4753025 TTAACTTGAATAAAAAAAAAAAATATCTATCTTAATTTTTAAAAAAATTTAATCGCCCCATGGAA
1 TTAACTTGAATAAAAAAAAAAAATATCTATCTTAA-TTTAAAAAAAAATTAATCGCCCCATGGAA
4753090 ATTGAATCA
65 ATTGAATCA
** *
4753099 TTAACTTGAATAAAAGGAAAAAA-AT-TATCTTAA-TTAAAAAAAAATTAATTGCCCCATGGAAA
1 TTAACTTGAATAAAAAAAAAAAATATCTATCTTAATTTAAAAAAAAATTAATCGCCCCATGGAAA
4753161 TTGAATCA
66 TTGAATCA
4753169 AATGAAAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 34 0.52
72 8 0.12
73 2 0.03
74 21 0.32
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.31
Consensus pattern (73 bp):
TTAACTTGAATAAAAAAAAAAAATATCTATCTTAATTTAAAAAAAAATTAATCGCCCCATGGAAA
TTGAATCA
Found at i:4755040 original size:22 final size:20
Alignment explanation
Indices: 4755004--4755047 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
4754994 TGAATTTAAC
4755004 TTTGTTATTATCTTTATATTTT
1 TTTGTTATTATCTTT-T-TTTT
4755026 TTTGTTATT-TGCTTTTTTTT
1 TTTGTTATTAT-CTTTTTTTT
4755046 TT
1 TT
4755048 ATTTACATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
21 2 0.10
22 13 0.62
ACGTcount: A:0.11, C:0.05, G:0.07, T:0.77
Consensus pattern (20 bp):
TTTGTTATTATCTTTTTTTT
Found at i:4755102 original size:17 final size:17
Alignment explanation
Indices: 4755072--4755118 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
4755062 TTAAAAAAAG
4755072 AAAA-AATT-TTATGAA
1 AAAATAATTATTATGAA
*
4755087 AAAATAATTATTATGAG
1 AAAATAATTATTATGAA
* *
4755104 ATAATATTTATTATG
1 AAAATAATTATTATG
4755119 TAATTTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 4 0.15
16 4 0.15
17 19 0.70
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (17 bp):
AAAATAATTATTATGAA
Found at i:4755209 original size:19 final size:19
Alignment explanation
Indices: 4755181--4755218 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
4755171 ATATTAAAAC
* *
4755181 ATAAATAAATATTATTTAA
1 ATAAACAAATAATATTTAA
4755200 ATAAACAAATAATATTTAA
1 ATAAACAAATAATATTTAA
4755219 TTTAGTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAAACAAATAATATTTAA
Found at i:4764260 original size:2 final size:2
Alignment explanation
Indices: 4764255--4764283 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4764245 ATATATATAT
4764255 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
4764284 TATATATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:4767937 original size:18 final size:19
Alignment explanation
Indices: 4767914--4767949 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4767904 AATAACCCAG
*
4767914 TTTGACATC-AAAACTTTT
1 TTTGACAACTAAAACTTTT
4767932 TTTGACAACTAAAACTTT
1 TTTGACAACTAAAACTTT
4767950 GAATAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (19 bp):
TTTGACAACTAAAACTTTT
Found at i:4774064 original size:2 final size:2
Alignment explanation
Indices: 4774057--4774103 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
4774047 TCAATGGTTC
4774057 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4774099 TA TA T
1 TA TA T
4774104 GTATGTATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4775527 original size:9 final size:9
Alignment explanation
Indices: 4775513--4775543 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
4775503 TTTGTAAAAT
4775513 ATTATTAAA
1 ATTATTAAA
4775522 ATTATTAAA
1 ATTATTAAA
4775531 ATTATTAATA
1 ATTATTAA-A
4775541 ATT
1 ATT
4775544 TAATTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
ATTATTAAA
Found at i:4775624 original size:9 final size:8
Alignment explanation
Indices: 4775607--4775633 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
4775597 AATTATTTAT
4775607 AATAAAAA
1 AATAAAAA
4775615 AATAAAAA
1 AATAAAAA
4775623 AATAAAAA
1 AATAAAAA
4775631 AAT
1 AAT
4775634 TGATTATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:4782261 original size:26 final size:26
Alignment explanation
Indices: 4782225--4782277 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4782215 AGCTAGAAAG
4782225 AACTTCATCATTTATAATCTATAACT
1 AACTTCATCATTTATAATCTATAACT
4782251 AACTTCATCATTTATAATCTATAACT
1 AACTTCATCATTTATAATCTATAACT
4782277 A
1 A
4782278 TAAATTAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.42
Consensus pattern (26 bp):
AACTTCATCATTTATAATCTATAACT
Found at i:4792490 original size:20 final size:20
Alignment explanation
Indices: 4792457--4792495 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4792447 CTTTCTTCTC
* *
4792457 TCTCTCTCTTTTTCTGATTG
1 TCTCTCTCTATTTCAGATTG
*
4792477 TCTCTTTCTATTTCAGATT
1 TCTCTCTCTATTTCAGATT
4792496 ATACGTAAGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.10, C:0.23, G:0.08, T:0.59
Consensus pattern (20 bp):
TCTCTCTCTATTTCAGATTG
Found at i:4798849 original size:2 final size:2
Alignment explanation
Indices: 4798790--4798830 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
4798780 ATATCCGTAG
4798790 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4798831 GTTATTTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4799405 original size:28 final size:27
Alignment explanation
Indices: 4799374--4799470 Score: 63
Period size: 31 Copynumber: 3.3 Consensus size: 27
4799364 AAACTTTTAA
4799374 TTTCGAAAAAAATTGATACTTTCAACTT
1 TTTC-AAAAAAATTGATACTTTCAACTT
** * *
4799402 TTTCTCAAAAATT--CACTTTTGAAAACTT
1 TTTCAAAAAAATTGATAC-TTT--CAACTT
4799430 GTTTCTAAGAAAAATTGATACTTTCAACTTT
1 -TTTC-AA-AAAAATTGATACTTTCAAC-TT
4799461 TCTTCAAAAA
1 T-TTCAAAAA
4799471 CCCATTTTTG
Statistics
Matches: 51, Mismatches: 8, Indels: 19
0.65 0.10 0.24
Matches are distributed among these distances:
25 2 0.04
26 3 0.06
27 7 0.14
28 9 0.18
29 7 0.14
30 6 0.12
31 12 0.24
32 3 0.06
33 2 0.04
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.40
Consensus pattern (27 bp):
TTTCAAAAAAATTGATACTTTCAACTT
Found at i:4799422 original size:59 final size:58
Alignment explanation
Indices: 4799321--4799572 Score: 214
Period size: 58 Copynumber: 4.3 Consensus size: 58
4799311 TTTTGTGTAG
* * *
4799321 GAAAAATTGATGCTTTTAACTTTTCCTCAAAAAAATT--TTTTTG-AAACTTTTAATTTCGAA
1 GAAAAATTGATACTTTCAACTTTTTCTC--AAAAATTCATTTTTGAAAACTTTT--TTTC-AA
* *
4799381 -AAAAATTGATACTTTCAACTTTTTCTCAAAAATTCACTTTTGAAAAC-TTGTTTCTAA
1 GAAAAATTGATACTTTCAACTTTTTCTCAAAAATTCATTTTTGAAAACTTTTTTTC-AA
**
4799438 GAAAAATTGATACTTTCAAC-TTTTCTTCAAAAACCCATTTTTGAAAACTTATTTTT-AA
1 GAAAAATTGATACTTTCAACTTTTTC-TCAAAAATTCATTTTTGAAAACTT-TTTTTCAA
* * * * **
4799496 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATATATATTTTTAGAAAGCTCATTTTCAA
1 GAAAAATTGATACTTTCAACTTTTTCTC-AAAAAT-T-CATTTTT-GAAAACTTTTTTTCAA
*
4799557 GGAAAATTGATACTTT
1 GAAAAATTGATACTTT
4799573 GATACTTTCA
Statistics
Matches: 162, Mismatches: 18, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
57 19 0.12
58 69 0.43
59 32 0.20
60 18 0.11
61 24 0.15
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (58 bp):
GAAAAATTGATACTTTCAACTTTTTCTCAAAAATTCATTTTTGAAAACTTTTTTTCAA
Found at i:4799520 original size:58 final size:58
Alignment explanation
Indices: 4799382--4799572 Score: 222
Period size: 58 Copynumber: 3.2 Consensus size: 58
4799372 AATTTCGAAA
* * * * *
4799382 AAAATTGATACTTTCAACTTTT-TCTCAAAAATTCACTTTTGAAAACTTGTTTCTAAGA
1 AAAATTGATACTTTCAACTTTTCT-TCAAAAATACATTTTTGAAAACTTATTTTTAAGG
**
4799440 AAAATTGATACTTTCAACTTTTCTTCAAAAACCCATTTTTGAAAACTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCTTCAAAAATACATTTTTGAAAACTTATTTTTAAGG
* * * * * *
4799498 AAAATTGATACTTTCAACTTTTCCCTAAAAATATATATTTTTAGAAAGCTCATTTTCAAGG
1 AAAATTGATACTTTCAACTTTT-CTTCAAAA-ATACATTTTT-GAAAACTTATTTTTAAGG
4799559 AAAATTGATACTTT
1 AAAATTGATACTTT
4799573 GATACTTTCA
Statistics
Matches: 115, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
58 72 0.63
59 7 0.06
60 7 0.06
61 29 0.25
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCTTCAAAAATACATTTTTGAAAACTTATTTTTAAGG
Found at i:4799682 original size:3 final size:3
Alignment explanation
Indices: 4799674--4799718 Score: 65
Period size: 3 Copynumber: 14.7 Consensus size: 3
4799664 CTAATCAATA
4799674 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AA- AAT ATAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT A-AT AA
4799719 AAAAATGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.05
3 31 0.79
4 6 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4799723 original size:12 final size:12
Alignment explanation
Indices: 4799673--4799724 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
4799663 TCTAATCAAT
4799673 AAATAAT-AATA
1 AAATAATAAATA
4799684 ATAATAAT-AATA
1 A-AATAATAAATA
4799696 ATAATAATAAATA
1 A-AATAATAAATA
4799709 AAATATATAAA-A
1 AAATA-ATAAATA
4799721 AAAT
1 AAAT
4799725 GAAAAATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.03
12 27 0.71
13 10 0.26
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAATAATAAATA
Found at i:4800181 original size:13 final size:12
Alignment explanation
Indices: 4800163--4800201 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
4800153 CATTTTCTAG
4800163 AAATTTTCAGAAA
1 AAATTTTCA-AAA
*
4800176 AAATTTGCAAAA
1 AAATTTTCAAAA
4800188 AAATTCTTCAAAA
1 AAATT-TTCAAAA
4800201 A
1 A
4800202 TTTCACCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 8 0.35
13 15 0.65
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTTTCAAAA
Found at i:4800509 original size:12 final size:12
Alignment explanation
Indices: 4800494--4800656 Score: 80
Period size: 12 Copynumber: 13.8 Consensus size: 12
4800484 AAGAAAATAA
4800494 AATAAAATAAAT
1 AATAAAATAAAT
4800506 AATAAAAT-AA-
1 AATAAAATAAAT
*
4800516 AA-AAGAT-AAT
1 AATAAAATAAAT
*
4800526 AATAAGGAT-AAT
1 AATAA-AATAAAT
*
4800538 ATATTAAAT-AAT
1 A-ATAAAATAAAT
*
4800550 AATAAAATATA-
1 AATAAAATAAAT
*
4800561 AAT-AGATAAAT
1 AATAAAATAAAT
4800572 AATAATAAT-AAT
1 AATAA-AATAAAT
*
4800584 AATATTAATAAAT
1 AATA-AAATAAAT
*
4800597 AGTAATAATAAAT
1 AATAA-AATAAAT
4800610 AAATAAATAATAAAT
1 -AAT-AA-AATAAAT
4800625 ACATAAAATACAA-
1 A-ATAAAATA-AAT
*
4800638 AATAAAGT-AA-
1 AATAAAATAAAT
4800648 AATAAAATA
1 AATAAAATA
4800657 TAAAATATAA
Statistics
Matches: 121, Mismatches: 14, Indels: 33
0.72 0.08 0.20
Matches are distributed among these distances:
9 6 0.05
10 18 0.15
11 16 0.13
12 39 0.32
13 23 0.19
14 7 0.06
15 12 0.10
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (12 bp):
AATAAAATAAAT
Found at i:4800527 original size:3 final size:3
Alignment explanation
Indices: 4800489--4800622 Score: 75
Period size: 3 Copynumber: 43.7 Consensus size: 3
4800479 AAAAGAAGAA
* *
4800489 AAT AA- AAT AA- AAT AAAT AAT AA- AAT AA- AAA AGAT AAT AAT AAG
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
4800532 GAT AAT -AT ATT AAAT AAT AAT AA- AAT -AT AAAT AGAT AAAT AAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT -AAT A-AT -AAT AAT AAT
* *
4800578 AAT AAT AAT ATT AAT AAAT AGT AAT AAT AAAT AAAT AAAT AAT AA
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT -AAT -AAT AAT AA
4800623 ATACATAAAA
Statistics
Matches: 105, Mismatches: 11, Indels: 30
0.72 0.08 0.21
Matches are distributed among these distances:
2 14 0.13
3 63 0.60
4 27 0.26
5 1 0.01
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:4800530 original size:37 final size:37
Alignment explanation
Indices: 4800489--4800674 Score: 106
Period size: 37 Copynumber: 5.0 Consensus size: 37
4800479 AAAAGAAGAA
4800489 AATAAAATAAAATAAATAATAAAATAAAAAAGATAAT
1 AATAAAATAAAATAAATAATAAAATAAAAAAGATAAT
* * *
4800526 AATAAGGATAATATATTAAATAAT--AATAAAATATA-AAT
1 AATAA-AATAA-A-A-TAAATAATAAAATAAAAAAGATAAT
*
4800564 AGAT-AAATAATAAT-AATAATAATATTAATAAATAG-TAAT
1 A-ATAAAATAA-AATAAATAATAA-AATAA-AAA-AGATAAT
* *
4800603 AAT-AAAT-AAATAAATAAT-AAATACATAAA-ATACAA
1 AATAAAATAAAATAAATAATAAAATA-AAAAAGATA-AT
* *
4800638 AATAAAGTAAAATAAA-ATATAAAATATAAAAATATAA
1 AATAAAATAAAATAAATA-ATAAAATA-AAAAAGATAA
4800675 GAAATACAAA
Statistics
Matches: 116, Mismatches: 13, Indels: 39
0.69 0.08 0.23
Matches are distributed among these distances:
34 9 0.08
35 10 0.09
36 10 0.09
37 31 0.27
38 27 0.23
39 20 0.17
40 1 0.01
41 8 0.07
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (37 bp):
AATAAAATAAAATAAATAATAAAATAAAAAAGATAAT
Found at i:4800570 original size:25 final size:24
Alignment explanation
Indices: 4800553--4800660 Score: 75
Period size: 25 Copynumber: 4.4 Consensus size: 24
4800543 AAATAATAAT
4800553 AAAATATAAATAGATAAATAATAAT
1 AAAATATAAATA-ATAAATAATAAT
* *
4800578 AATAATA-ATATTAATAAATAGTAAT
1 AA-AATATA-AATAATAAATAATAAT
4800603 AATAA-ATAAATAA-ATAATAAATACAT
1 AA-AATATAAATAATA-AAT-AATA-AT
*
4800629 AAAATA-CAA-AATAAAGTAA-AAT
1 AAAATATAAATAATAAA-TAATAAT
4800651 AAAATATAAA
1 AAAATATAAA
4800661 ATATAAAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 22
0.71 0.06 0.23
Matches are distributed among these distances:
22 8 0.12
23 4 0.06
24 14 0.21
25 29 0.43
26 12 0.18
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (24 bp):
AAAATATAAATAATAAATAATAAT
Found at i:4800575 original size:46 final size:48
Alignment explanation
Indices: 4800484--4800622 Score: 157
Period size: 46 Copynumber: 3.0 Consensus size: 48
4800474 TAAAAAAAAG
* * *
4800484 AAGAA-AATAAAATAAAATAAATAATAAAATA-AAAAAGAT-AATAAT
1 AAGAATAATAATATTAAATAAATAATAAAATATAAATAGATAAATAAT
*
4800529 AAGGATAAT-ATATTAAAT-AATAATAAAATATAAATAGATAAATAAT
1 AAGAATAATAATATTAAATAAATAATAAAATATAAATAGATAAATAAT
* * * *
4800575 AATAATAATAATATT-AATAAATAGTAATA-ATAAATAAATAAATAAT
1 AAGAATAATAATATTAAATAAATAATAAAATATAAATAGATAAATAAT
4800621 AA
1 AA
4800623 ATACATAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.15
45 18 0.22
46 37 0.46
47 13 0.16
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.27
Consensus pattern (48 bp):
AAGAATAATAATATTAAATAAATAATAAAATATAAATAGATAAATAAT
Found at i:4800602 original size:28 final size:28
Alignment explanation
Indices: 4800544--4800634 Score: 91
Period size: 28 Copynumber: 3.2 Consensus size: 28
4800534 TAATATATTA
* *
4800544 AATAATAATAA-AATATAAATAGATAAAT
1 AATAATAATAATAATATTAATAAAT-AAT
*
4800572 AATAATAATAATAATATTAATAAATAGT
1 AATAATAATAATAATATTAATAAATAAT
4800600 AATAATAAATAAATAA-A-TAATAAATACAT
1 AATAAT-AAT-AATAATATTAATAAATA-AT
4800629 AA-AATA
1 AATAATA
4800635 CAAAATAAAG
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
27 1 0.02
28 31 0.56
29 18 0.33
30 5 0.09
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (28 bp):
AATAATAATAATAATATTAATAAATAAT
Found at i:4800631 original size:15 final size:13
Alignment explanation
Indices: 4800494--4800634 Score: 109
Period size: 13 Copynumber: 10.8 Consensus size: 13
4800484 AAGAAAATAA
4800494 AATAA-AATAAAT
1 AATAATAATAAAT
*
4800506 AATAA-AATAAAAA
1 AATAATAAT-AAAT
4800519 AGATAATAATAAGGAT
1 A-ATAATAATAA--AT
*
4800535 AAT-ATATTAAAT
1 AATAATAATAAAT
4800547 AATAAT-A-AAAT
1 AATAATAATAAAT
4800558 -ATAAATAGATAAAT
1 AAT-AATA-ATAAAT
4800572 AATAATAAT-AAT
1 AATAATAATAAAT
*
4800584 AATATTAATAAAT
1 AATAATAATAAAT
*
4800597 AGTAATAATAAAT
1 AATAATAATAAAT
4800610 AAATAAATAATAAAT
1 -AAT-AATAATAAAT
4800625 ACATAA-AATA
1 A-ATAATAATA
4800635 CAAAATAAAG
Statistics
Matches: 106, Mismatches: 8, Indels: 29
0.74 0.06 0.20
Matches are distributed among these distances:
10 2 0.02
11 7 0.07
12 24 0.23
13 27 0.25
14 25 0.24
15 19 0.18
16 2 0.02
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (13 bp):
AATAATAATAAAT
Found at i:4800647 original size:46 final size:45
Alignment explanation
Indices: 4800499--4800653 Score: 108
Period size: 46 Copynumber: 3.4 Consensus size: 45
4800489 AATAAAATAA
* ** *
4800499 AATAAATAA-TAAAATAAA-AAAGATAATAATAAGGATAAT-ATATTA
1 AATAAA-AAGTAAAATAAATAAATA-AATAATAATAATAATAATA-TC
* * *
4800544 AATAATAA-TAAAATATAAATAGATAAATAATAATAATAATAATATT
1 AATAAAAAGT-AAA-ATAAATAAATAAATAATAATAATAATAATATC
*
4800590 AATAAATAGTAATAATAAATAAATAAATAATAAATACATAA-AATA-C
1 AATAAAAAGTAA-AATAAATAAATAAATAAT-AATA-ATAATAATATC
4800636 AA-AATAAAGTAAAATAAA
1 AATAA-AAAGTAAAATAAA
4800654 ATATAAAATA
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
44 3 0.03
45 16 0.18
46 51 0.57
47 16 0.18
48 4 0.04
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (45 bp):
AATAAAAAGTAAAATAAATAAATAAATAATAATAATAATAATATC
Found at i:4800656 original size:46 final size:45
Alignment explanation
Indices: 4800543--4800685 Score: 109
Period size: 46 Copynumber: 3.1 Consensus size: 45
4800533 ATAATATATT
* * *
4800543 AAATAATAATAAAATATAAATAGATAAATAAT-AATAATAATAATATTA
1 AAATAA-AGTAAAATA-AAATAAATAAATAATAAATAATAA-AATA-CA
*
4800591 ATAA-ATAGTAATAAT-AAATAAATAAATAATAAATACATAAAATACA
1 A-AATAAAGTAA-AATAAAATAAATAAATAATAAATA-ATAAAATACA
4800637 AAATAAAGTAAAATAAAATATAA-AATATAA-AAAT-ATAAGAAATACA
1 AAATAAAGTAAAATAAAATA-AATAA-ATAATAAATAAT-A-AAATACA
4800683 AAA
1 AAA
4800686 ATACAAAATA
Statistics
Matches: 80, Mismatches: 5, Indels: 22
0.75 0.05 0.21
Matches are distributed among these distances:
44 2 0.03
45 6 0.08
46 43 0.54
47 18 0.22
48 9 0.11
49 2 0.03
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (45 bp):
AAATAAAGTAAAATAAAATAAATAAATAATAAATAATAAAATACA
Found at i:4800671 original size:8 final size:8
Alignment explanation
Indices: 4800651--4800693 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
4800641 AAAGTAAAAT
4800651 AAAATAT-
1 AAAATATA
4800658 AAAATATA
1 AAAATATA
4800666 AAAATATA
1 AAAATATA
*
4800674 AGAAATACA
1 A-AAATATA
*
4800683 AAAATACA
1 AAAATATA
4800691 AAA
1 AAA
4800694 TAAAGTGAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
7 7 0.21
8 19 0.58
9 7 0.21
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (8 bp):
AAAATATA
Found at i:4800674 original size:22 final size:21
Alignment explanation
Indices: 4800627--4800685 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 21
4800617 TAATAAATAC
4800627 ATAAAATACAAAATAAAGTAAA
1 ATAAAATACAAAATAAAG-AAA
*
4800649 ATAAAATATAAAATATAA-AAA
1 ATAAAATACAAAATA-AAGAAA
4800670 TATAAGAAATACAAAA
1 -AT-A-AAATACAAAA
4800686 ATACAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
21 3 0.10
22 16 0.52
23 3 0.10
24 9 0.29
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (21 bp):
ATAAAATACAAAATAAAGAAA
Found at i:4800679 original size:17 final size:15
Alignment explanation
Indices: 4800651--4800695 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
4800641 AAAGTAAAAT
*
4800651 AAAATATAAAATATA
1 AAAATATAAAATACA
4800666 AAAATATAAGAAATACA
1 AAAATAT-A-AAATACA
*
4800683 AAAATACAAAATA
1 AAAATATAAAATA
4800696 AAGTGAGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 12 0.46
16 2 0.08
17 12 0.46
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (15 bp):
AAAATATAAAATACA
Found at i:4828167 original size:2 final size:2
Alignment explanation
Indices: 4828160--4828185 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4828150 TCCTTGAAGT
4828160 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
4828186 AGACTATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:4836298 original size:18 final size:17
Alignment explanation
Indices: 4836266--4836299 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4836256 ATATTTTTTC
*
4836266 AAAATTTTAATTATTAA
1 AAAATTGTAATTATTAA
4836283 AAAATTGTATATTATTA
1 AAAATTGTA-ATTATTA
4836300 TTAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
AAAATTGTAATTATTAA
Found at i:4838150 original size:28 final size:29
Alignment explanation
Indices: 4838118--4838172 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
4838108 GCTTTTAAAT
*
4838118 TTTTAATG-TATT-TATGTTATTTTTTATA
1 TTTTAATGAAATTATAT-TTATTTTTTATA
4838146 TTTTAATGAAATTATATTTATTTTTTA
1 TTTTAATGAAATTATATTTATTTTTTA
4838173 GTAATTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 13 0.54
30 3 0.12
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.65
Consensus pattern (29 bp):
TTTTAATGAAATTATATTTATTTTTTATA
Found at i:4842159 original size:2 final size:2
Alignment explanation
Indices: 4842152--4842185 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
4842142 TATTGGTGAC
*
4842152 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4842186 ATCACCGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4843162 original size:30 final size:29
Alignment explanation
Indices: 4843068--4843165 Score: 74
Period size: 30 Copynumber: 3.3 Consensus size: 29
4843058 TTGTTGCAGC
* *
4843068 TAAATAAATTTTTATTTTTTATTTTATAT
1 TAAATAAATATTTATTTTTTAATTTATAT
* ** * *
4843097 TGCAATAAA-ATTTTAAAATTTAAATTT-TGTT
1 T-AAATAAATA-TTT-ATTTTTTAATTTAT-AT
4843128 TAAATAAATATTTATTTTTTAATTTATAT
1 TAAATAAATATTTATTTTTTAATTTATAT
4843157 ATAAATAAA
1 -TAAATAAA
4843166 CTCTTAACAT
Statistics
Matches: 50, Mismatches: 12, Indels: 13
0.67 0.16 0.17
Matches are distributed among these distances:
29 11 0.22
30 28 0.56
31 11 0.22
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (29 bp):
TAAATAAATATTTATTTTTTAATTTATAT
Found at i:4845115 original size:62 final size:62
Alignment explanation
Indices: 4844996--4845115 Score: 145
Period size: 62 Copynumber: 1.9 Consensus size: 62
4844986 GCTTTTAGTA
* **
4844996 AAAAATATCTTAAATAATATTGTTCAAAAAATTAAAAATTATTATTTAAGGTATTTTTGATT
1 AAAAATATCTTAAATAATATTGTTCAAAAAATTAAAAATGATTATTTAAAATATTTTTGATT
* * * *
4845058 AAAAATATTTTAAATAATACTT-TTCAAAAAATTTTAAGA-GATTATTTAAAATGTTTTT
1 AAAAATATCTTAAATAATA-TTGTTCAAAAAA-TTAAAAATGATTATTTAAAATATTTTT
4845116 AACAAAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
62 42 0.86
63 7 0.14
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (62 bp):
AAAAATATCTTAAATAATATTGTTCAAAAAATTAAAAATGATTATTTAAAATATTTTTGATT
Found at i:4845124 original size:62 final size:62
Alignment explanation
Indices: 4844995--4845135 Score: 144
Period size: 62 Copynumber: 2.3 Consensus size: 62
4844985 TGCTTTTAGT
* ** * *
4844995 AAAAAATATCTTAAATAATATTGTTCAAAAAATTAAAAATTATTATTTAAGGTATTTTTGAT
1 AAAAAATATCTTAAATAATATTGTTCAAAAAATTAAAAATGATTATTTAAAATATTTTTAAC
* * * * *
4845057 TAAAAATATTTTAAATAATACTT-TTCAAAAAATTTTAAGA-GATTATTTAAAATGTTTTTAAC
1 AAAAAATATCTTAAATAATA-TTGTTCAAAAAA-TTAAAAATGATTATTTAAAATATTTTTAAC
4845119 AAAAAATGA-CTTAAATA
1 AAAAAAT-ATCTTAAATA
4845136 GTCTTTTGGT
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
62 56 0.88
63 8 0.12
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (62 bp):
AAAAAATATCTTAAATAATATTGTTCAAAAAATTAAAAATGATTATTTAAAATATTTTTAAC
Found at i:4848305 original size:18 final size:18
Alignment explanation
Indices: 4848271--4848305 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4848261 CCTGCTGTTA
* *
4848271 CCTTTCTTTTTTTTTTTT
1 CCTTTCTTTATTATTTTT
4848289 CCTTTCTTTATTATTTT
1 CCTTTCTTTATTATTTT
4848306 GTTTGTTCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (18 bp):
CCTTTCTTTATTATTTTT
Found at i:4852455 original size:30 final size:30
Alignment explanation
Indices: 4852414--4852472 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
4852404 ATGAAATTTT
*
4852414 TTTGAATTTTTAAAATCTTACATAAAATTG
1 TTTGAAATTTTAAAATCTTACATAAAATTG
**
4852444 TTTGAAATTTTAATGTCTTACATAAAATT
1 TTTGAAATTTTAAAATCTTACATAAAATT
4852473 TTTAAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (30 bp):
TTTGAAATTTTAAAATCTTACATAAAATTG
Found at i:4852630 original size:21 final size:21
Alignment explanation
Indices: 4852590--4852639 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
4852580 ATAATTTATT
*
4852590 AAATAAAATTATTTGATAAAC
1 AAATAAAATTATTTGATAAAA
*
4852611 AACTAAAATTATTT-ATTAAAA
1 AAATAAAATTATTTGA-TAAAA
4852632 AAATAAAA
1 AAATAAAA
4852640 ATACATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (21 bp):
AAATAAAATTATTTGATAAAA
Found at i:4854487 original size:18 final size:19
Alignment explanation
Indices: 4854464--4854500 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
4854454 AATAAATATC
4854464 GAAAACCAG-GGAAG-TAGA
1 GAAAA-CAGAGGAAGCTAGA
4854482 GAAAACAGAGGAAGCTAGA
1 GAAAACAGAGGAAGCTAGA
4854501 TACAAAAGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.18
18 10 0.59
19 4 0.24
ACGTcount: A:0.51, C:0.11, G:0.32, T:0.05
Consensus pattern (19 bp):
GAAAACAGAGGAAGCTAGA
Found at i:4865167 original size:33 final size:32
Alignment explanation
Indices: 4865129--4865196 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
4865119 TAAGATTGTT
*
4865129 TTATCACTTATAATATAAACTTATTTTATTTAA
1 TTATCACTTATAATATAAAATTA-TTTATTTAA
4865162 TTATCACTTATAATATAAAATTATTTATTTAA
1 TTATCACTTATAATATAAAATTATTTATTTAA
4865194 TTA
1 TTA
4865197 ATAATCATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 12 0.35
33 22 0.65
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (32 bp):
TTATCACTTATAATATAAAATTATTTATTTAA
Found at i:4865210 original size:23 final size:25
Alignment explanation
Indices: 4865183--4865249 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 25
4865173 AATATAAAAT
*
4865183 TATTTATT-TAATTAATAATCATTA
1 TATTTATTATAATTAAAAATCATTA
*
4865207 -ATTT-TTATAATTAAAAATTATTA
1 TATTTATTATAATTAAAAATCATTA
**
4865230 TATTTATTATTTTTAAAAAT
1 TATTTATTATAATTAAAAAT
4865250 TAAATGTTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 2 0.06
23 18 0.50
24 4 0.11
25 12 0.33
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (25 bp):
TATTTATTATAATTAAAAATCATTA
Found at i:4865245 original size:25 final size:24
Alignment explanation
Indices: 4865217--4865278 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
4865207 ATTTTTATAA
*
4865217 TTAAAAATTATTATATT-TATTATTT
1 TTAAAAATTA-AATATTGTATTA-TT
*
4865242 TTAAAAATTAAATGTTGTATTATT
1 TTAAAAATTAAATATTGTATTATT
4865266 TTAAAATATTAAA
1 TTAAAA-ATTAAA
4865279 ATAATAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 12 0.36
25 21 0.64
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (24 bp):
TTAAAAATTAAATATTGTATTATT
Found at i:4880798 original size:2 final size:2
Alignment explanation
Indices: 4880791--4880815 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4880781 TCTTTGTAGC
4880791 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4880816 ATCTCATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4895693 original size:52 final size:52
Alignment explanation
Indices: 4895605--4895761 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
4895595 TTGACAAGAA
* *
4895605 GACTTGCAAAAGAAGAATTCTAAGA-GAAAGAAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAG-AGATTCTTAATAGGCAAGTTT
* * *
4895657 GACTTGCAAGAGAAGAATTTTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
* * * *
4895709 GACTTACAGGAGAAGAATTCTAAGAGGAGAGAGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
4895761 G
1 G
4895762 TATGGTTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 87 0.95
53 5 0.05
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.26
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:4896365 original size:25 final size:24
Alignment explanation
Indices: 4896337--4896418 Score: 69
Period size: 25 Copynumber: 3.4 Consensus size: 24
4896327 GATTCAAGAT
4896337 ATGGGAAGAGCCGATGGTTCGAGAC
1 ATGGGAAGAG-CGATGGTTCGAGAC
* * *
4896362 AT-GGAAGGAGTTGATAGTTCGAGAT
1 ATGGGAA-GAG-CGATGGTTCGAGAC
* *
4896387 ATGGGAAGAGC-TTGGTTTGAGAC
1 ATGGGAAGAGCGATGGTTCGAGAC
*
4896410 ATGAGAAGA
1 ATGGGAAGA
4896419 AGTAAGCTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
23 16 0.36
24 4 0.09
25 21 0.47
26 4 0.09
ACGTcount: A:0.32, C:0.09, G:0.38, T:0.22
Consensus pattern (24 bp):
ATGGGAAGAGCGATGGTTCGAGAC
Found at i:4896373 original size:50 final size:50
Alignment explanation
Indices: 4896293--4896397 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 50
4896283 AAGTGGTATC
* *
4896293 AGAGCTGAAGGTTCGAAACGTGAGAAGAGTT-AAAGATTCAAGATATGGGA
1 AGAGCCGAAGGTTCGAAACATGAGAAGAGTTGAAAG-TTCAAGATATGGGA
* * * *
4896343 AGAGCCGATGGTTCGAGACATG-GAAGGAGTTGATAGTTCGAGATATGGGA
1 AGAGCCGAAGGTTCGAAACATGAGAA-GAGTTGAAAGTTCAAGATATGGGA
4896393 AGAGC
1 AGAGC
4896398 TTGGTTTGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 3 0.06
50 41 0.87
51 3 0.06
ACGTcount: A:0.35, C:0.10, G:0.35, T:0.20
Consensus pattern (50 bp):
AGAGCCGAAGGTTCGAAACATGAGAAGAGTTGAAAGTTCAAGATATGGGA
Found at i:4896655 original size:11 final size:11
Alignment explanation
Indices: 4896636--4896675 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
4896626 AATCCCATAA
4896636 GAGATTTGTTT
1 GAGATTTGTTT
* *
4896647 GAAATTTGTTA
1 GAGATTTGTTT
4896658 GAGATTTGTTT
1 GAGATTTGTTT
4896669 GAGATTT
1 GAGATTT
4896676 TTCAGATATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:4896790 original size:52 final size:52
Alignment explanation
Indices: 4896702--4896827 Score: 182
Period size: 52 Copynumber: 2.4 Consensus size: 52
4896692 TGAACAAGAA
* * *
4896702 GACTTGCAAAAGAAGAATTCTAAAATAAAGAAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGAAAGAAGATTCTTAATAGGCAAGTTT
*
4896754 GACTTGCAAGAGAAGAATTCTAAAAGGAAAG-GGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAA-GAAAGAAGATTCTTAATAGGCAAGTTT
* *
4896806 GACTTACAGGAGAAGAATTCTA
1 GACTTGCAAGAGAAGAATTCTA
4896828 GGAGAGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 63 0.94
53 4 0.06
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAAAGAAAGAAGATTCTTAATAGGCAAGTTT
Found at i:4903019 original size:17 final size:17
Alignment explanation
Indices: 4902999--4903031 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4902989 ATAATCATCG
*
4902999 AGATAATTTTATTATTA
1 AGATAATCTTATTATTA
4903016 AGATAATCTTATTATT
1 AGATAATCTTATTATT
4903032 CATTATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
AGATAATCTTATTATTA
Found at i:4904270 original size:20 final size:21
Alignment explanation
Indices: 4904245--4904287 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
4904235 GGAATAACGC
4904245 TCCAAAAAC-CCTCACTCTCT
1 TCCAAAAACACCTCACTCTCT
*
4904265 TCCAAAAACAGCGTCACTCTCT
1 TCCAAAAACA-CCTCACTCTCT
4904287 T
1 T
4904288 TCCCTCTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
22 11 0.55
ACGTcount: A:0.30, C:0.40, G:0.05, T:0.26
Consensus pattern (21 bp):
TCCAAAAACACCTCACTCTCT
Found at i:4906309 original size:49 final size:50
Alignment explanation
Indices: 4906252--4906347 Score: 167
Period size: 49 Copynumber: 1.9 Consensus size: 50
4906242 GATATGGTTC
*
4906252 GTGACTTATCCTTGTTCTGGGTTT-GTTAGTTAATTGCATTTATTTTTTT
1 GTGACTTATCCTTGTTCTGGGTTTGGCTAGTTAATTGCATTTATTTTTTT
*
4906301 GTGACTTATCCTTGTTCTGGGTTTGGCTAGTTGATTGCATTTATTTT
1 GTGACTTATCCTTGTTCTGGGTTTGGCTAGTTAATTGCATTTATTTT
4906348 AACACTTTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 24 0.55
50 20 0.45
ACGTcount: A:0.14, C:0.11, G:0.21, T:0.54
Consensus pattern (50 bp):
GTGACTTATCCTTGTTCTGGGTTTGGCTAGTTAATTGCATTTATTTTTTT
Found at i:4919295 original size:12 final size:12
Alignment explanation
Indices: 4919278--4919302 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4919268 TGATAATATG
4919278 AAAAATTTTATA
1 AAAAATTTTATA
4919290 AAAAATTTTATA
1 AAAAATTTTATA
4919302 A
1 A
4919303 TTTTATGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAAATTTTATA
Found at i:4922627 original size:6 final size:6
Alignment explanation
Indices: 4922584--4922624 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
4922574 TTTCTTTCTT
*
4922584 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGA TTTTG
1 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTG
4922625 ATTCTGACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.02, C:0.00, G:0.29, T:0.68
Consensus pattern (6 bp):
TTTTGG
Found at i:4925768 original size:2 final size:2
Alignment explanation
Indices: 4925761--4925790 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
4925751 TTTTCTAGTC
*
4925761 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4925791 CATGTGTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4928103 original size:21 final size:22
Alignment explanation
Indices: 4928074--4928118 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
4928064 CTAAAAATAA
4928074 TTATCTAAAAATATATTAAAAT
1 TTATCTAAAAATATATTAAAAT
* * *
4928096 TTAT-TAAAATTTTTTTAAAAT
1 TTATCTAAAAATATATTAAAAT
4928117 TT
1 TT
4928119 TACACACTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TTATCTAAAAATATATTAAAAT
Found at i:4928113 original size:11 final size:11
Alignment explanation
Indices: 4928087--4928120 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
4928077 TCTAAAAATA
4928087 TATTAAAA-TT
1 TATTAAAATTT
4928097 TATTAAAATTT
1 TATTAAAATTT
*
4928108 TTTTAAAATTT
1 TATTAAAATTT
4928119 TA
1 TA
4928121 CACACTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 8 0.38
11 13 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTAAAATTT
Found at i:4928202 original size:21 final size:21
Alignment explanation
Indices: 4928176--4928216 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
4928166 TTTTTAATTT
4928176 TAATTTTAATTAAAAATTTTA
1 TAATTTTAATTAAAAATTTTA
*
4928197 TAATTTTACTTAAAAATTTT
1 TAATTTTAATTAAAAATTTT
4928217 TATTTAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TAATTTTAATTAAAAATTTTA
Found at i:4932231 original size:2 final size:2
Alignment explanation
Indices: 4932224--4932248 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4932214 TTGTATTATC
4932224 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4932249 AGTATTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4935538 original size:16 final size:15
Alignment explanation
Indices: 4935500--4935538 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
4935490 TTTTAAGTGT
4935500 TTATTTAATAAAAAA
1 TTATTTAATAAAAAA
4935515 TTGA-TTAATTAAAAAA
1 TT-ATTTAA-TAAAAAA
4935531 TTATTTAA
1 TTATTTAA
4935539 GAGTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TTATTTAATAAAAAA
Done.