Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 20 of 113
Found at i:6879812 original size:78 final size:78
Alignment explanation
Indices: 6879682--6879836 Score: 249
Period size: 78 Copynumber: 2.0 Consensus size: 78
6879672 ACAAACACAT
* *
6879682 AGTCGCCCACCTGCCTGAGGTCGATCAGTCGGAAGGGACTACCCTCAGAACTGGATGCGCCCGAA
1 AGTCGCCCACCTGCCTGAGGTCGATCAGTCGGAAGGGACTACCCTCAAAACTGGATGCGCCCAAA
6879747 TCTGATTCCAACC
66 TCTGATTCCAACC
* *
6879760 AGTCGCCCACCTGCTTGAGGTCGATCCGTCGGAAGGGACTACGCC-CAAAACTGGATGCGCCCAA
1 AGTCGCCCACCTGCCTGAGGTCGATCAGTCGGAAGGGACTAC-CCTCAAAACTGGATGCGCCCAA
*
6879824 ATCTGGTTCCAAC
65 ATCTGATTCCAAC
6879837 AAGACCCCCA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 69 0.97
79 2 0.03
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (78 bp):
AGTCGCCCACCTGCCTGAGGTCGATCAGTCGGAAGGGACTACCCTCAAAACTGGATGCGCCCAAA
TCTGATTCCAACC
Found at i:6879941 original size:119 final size:117
Alignment explanation
Indices: 6879732--6879955 Score: 394
Period size: 119 Copynumber: 1.9 Consensus size: 117
6879722 ACCCTCAGAA
*
6879732 CTGGATGCGCCCGAATCTGATTCCAACCAGTCGCCCACCTGCTTGAGGTCGATCCGTCGGAAGGG
1 CTGGATGCGCCCGAATCTGATTCCAACCAGTCGCCCACCTGCTTGAGGTCGATCCGTCAGAAGGG
6879797 ACTACGCCCAAAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGT
66 ACTACGCCCAAAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGT
*
6879849 CTGGATGCGCCCGAATCTGGTTCCAACCAGTCGCCCACCACTGCTTGAGGTCGATCCGTCAGAAG
1 CTGGATGCGCCCGAATCTGATTCCAACCAGTCGCCCA-C-CTGCTTGAGGTCGATCCGTCAGAAG
* *
6879914 GGACTATGCCCAGAACTGGATGCGCCCAAATCTGGTTCCAAC
64 GGACTACGCCCAAAACTGGATGCGCCCAAATCTGGTTCCAAC
6879956 CAGTTGCCCA
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
117 36 0.36
118 1 0.01
119 64 0.63
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (117 bp):
CTGGATGCGCCCGAATCTGATTCCAACCAGTCGCCCACCTGCTTGAGGTCGATCCGTCAGAAGGG
ACTACGCCCAAAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGT
Found at i:6879947 original size:80 final size:80
Alignment explanation
Indices: 6879849--6880115 Score: 480
Period size: 80 Copynumber: 3.3 Consensus size: 80
6879839 GACCCCCAGT
*
6879849 CTGGATGCGCCCGAATCTGGTTCCAACCAGTCGCCCACCACTGCTTGAGGTCGATCCGTCAGAAG
1 CTGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCTTGAGGTCGATCCGTCAGAAG
*
6879914 GGACTATGCCCAGAA
66 GGACTACGCCCAGAA
*
6879929 CTGGATGCGCCCAAATCTGGTTCCAACCAGTTGCCCACCACTGCTTGAGGTCGATCCGTCAGAAG
1 CTGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCTTGAGGTCGATCCGTCAGAAG
6879994 GGACTACGCCCAGAA
66 GGACTACGCCCAGAA
* * *
6880009 TTGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAG
1 CTGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCTTGAGGTCGATCCGTCAGAAG
6880074 GGACTACGCCCAGAA
66 GGACTACGCCCAGAA
6880089 CTGGATGCGCCCAAATCTGGTTCCAAC
1 CTGGATGCGCCCAAATCTGGTTCCAAC
6880116 AAGACCCCCA
Statistics
Matches: 179, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 179 1.00
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (80 bp):
CTGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCTTGAGGTCGATCCGTCAGAAG
GGACTACGCCCAGAA
Found at i:6880162 original size:119 final size:118
Alignment explanation
Indices: 6880010--6880233 Score: 430
Period size: 119 Copynumber: 1.9 Consensus size: 118
6880000 CGCCCAGAAT
6880010 TGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
1 TGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
6880075 GACTACGCCCAGAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTC
66 GACTACGCCCAGAACTGGATGCGCCCAAATCT-GTTCCAACAAGACCCCCAGTC
*
6880129 TGGATGCGCCCGAATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
1 TGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
6880194 GACTACGCCCAGAACTGGATGCGCCCAAATCTGTTCCAAC
66 GACTACGCCCAGAACTGGATGCGCCCAAATCTGTTCCAAC
6880234 CAATCGCCCA
Statistics
Matches: 104, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
118 8 0.08
119 96 0.92
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (118 bp):
TGGATGCGCCCAAATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
GACTACGCCCAGAACTGGATGCGCCCAAATCTGTTCCAACAAGACCCCCAGTC
Found at i:6880195 original size:279 final size:278
Alignment explanation
Indices: 6879684--6880337 Score: 1104
Period size: 279 Copynumber: 2.4 Consensus size: 278
6879674 AAACACATAG
* *
6879684 TCGCCCA-C-CTGCCTGAGGTCGATCAGTCGGAAGGGACTAC-CCTCAGAACTGGATGCGCCCGA
1 TCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCC-CAGAACTGGATGCGCCCAA
* *
6879746 ATCTGATTCCAACCAGTCGCCCA-C-CTGCTTGAGGTCGATCCGTCGGAAGGGACTACGCCCAAA
65 ATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAAA
6879809 ACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTGGATGCGCCCGAATCTGGTTCCA
130 ACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTGGATGCGCCCGAATCTGGTTCCA
* *
6879874 ACCAGTCGCCCACCACTGCTTGAGGTCGATCCGTCAGAAGGGACTATGCCCAGAACTGGATGCGC
195 ACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCAGAAGGGACTACGCCCAGAACTGGATGCGC
*
6879939 CCAAATCTGGTTCCAACCAG
260 CCAAATCT-GTTCCAACCAA
* * * *
6879959 TTGCCCACCACTGCTTGAGGTCGATCCGTCAGAAGGGACTACGCCCAGAATTGGATGCGCCCAAA
1 TCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAGAACTGGATGCGCCCAAA
*
6880024 TCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAGAA
66 TCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAAAA
6880089 CTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTGGATGCGCCCGAATCTGGTTCCAA
131 CTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTGGATGCGCCCGAATCTGGTTCCAA
*
6880154 CCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAGAACTGGATGCGCC
196 CCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCAGAAGGGACTACGCCCAGAACTGGATGCGCC
6880219 CAAATCTGTTCCAACCAA
261 CAAATCTGTTCCAACCAA
* * *
6880237 TCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCTAGAACTGGAAGAGCCCAAA
1 TCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAGAACTGGATGCGCCCAAA
6880302 TCT-GTTCCAACCAGTCGCCCACCACTGCCTGAGGTC
66 TCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTC
6880338 CAGTCGCCCA
Statistics
Matches: 354, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
275 6 0.02
276 1 0.00
277 101 0.29
278 74 0.21
279 172 0.49
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.18
Consensus pattern (278 bp):
TCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAGAACTGGATGCGCCCAAA
TCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGGGACTACGCCCAAAA
CTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTGGATGCGCCCGAATCTGGTTCCAA
CCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCAGAAGGGACTACGCCCAGAACTGGATGCGCC
CAAATCTGTTCCAACCAA
Found at i:6880232 original size:79 final size:79
Alignment explanation
Indices: 6880128--6880337 Score: 366
Period size: 79 Copynumber: 2.6 Consensus size: 79
6880118 GACCCCCAGT
*
6880128 CTGGATGCGCCCGAATCTGGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAG
1 CTGGATGCGCCCAAATCT-GTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAG
6880193 GGACTACGCCCAGAA
65 GGACTACGCCCAGAA
*
6880208 CTGGATGCGCCCAAATCTGTTCCAACCAATCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
1 CTGGATGCGCCCAAATCTGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
*
6880273 GACTACGCCTAGAA
66 GACTACGCCCAGAA
* *
6880287 CTGGAAGAGCCCAAATCTGTTCCAACCAGTCGCCCACCACTGCCTGAGGTC
1 CTGGATGCGCCCAAATCTGTTCCAACCAGTCGCCCACCACTGCCTGAGGTC
6880338 CAGTCGCCCA
Statistics
Matches: 124, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
79 107 0.86
80 17 0.14
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (79 bp):
CTGGATGCGCCCAAATCTGTTCCAACCAGTCGCCCACCACTGCCTGAGGTCGATCCGTCGGAAGG
GACTACGCCCAGAA
Found at i:6880341 original size:25 final size:25
Alignment explanation
Indices: 6880312--6880387 Score: 152
Period size: 25 Copynumber: 3.0 Consensus size: 25
6880302 TCTGTTCCAA
6880312 CCAGTCGCCCACCACTGCCTGAGGT
1 CCAGTCGCCCACCACTGCCTGAGGT
6880337 CCAGTCGCCCACCACTGCCTGAGGT
1 CCAGTCGCCCACCACTGCCTGAGGT
6880362 CCAGTCGCCCACCACTGCCTGAGGT
1 CCAGTCGCCCACCACTGCCTGAGGT
6880387 C
1 C
6880388 AATCCGTCGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.16, C:0.45, G:0.24, T:0.16
Consensus pattern (25 bp):
CCAGTCGCCCACCACTGCCTGAGGT
Found at i:6883774 original size:23 final size:22
Alignment explanation
Indices: 6883730--6883779 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
6883720 TGGTTCAACA
* * *
6883730 ATTTTTTAAATTTGATTTTTTTT
1 ATTTTTTAAATAT-AATTATTTT
*
6883753 ATTTTTTTAATATAATTATTTT
1 ATTTTTTAAATATAATTATTTT
6883775 ATTTT
1 ATTTT
6883780 ATACAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (22 bp):
ATTTTTTAAATATAATTATTTT
Found at i:6883819 original size:23 final size:22
Alignment explanation
Indices: 6883788--6883844 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 22
6883778 TTATACAAAT
6883788 AAAAAATATATATAAATTAATA
1 AAAAAATATATATAAATTAATA
6883810 AAAAATATATATATAAATTAATA
1 AAAAA-ATATATATAAATTAATA
6883833 AAAAAATATATA
1 AAAAAATATATA
6883845 ATTCGATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 12 0.35
23 22 0.65
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
AAAAAATATATATAAATTAATA
Found at i:6885764 original size:21 final size:22
Alignment explanation
Indices: 6885726--6885766 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
6885716 TGCCATAGCA
* *
6885726 AAGTTAAAGAAGCATCAAATGC
1 AAGTAAAAGAAACATCAAATGC
6885748 AAGTAAAAGAAAC-TCAAAT
1 AAGTAAAAGAAACATCAAAT
6885767 CATCAATCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.17
Consensus pattern (22 bp):
AAGTAAAAGAAACATCAAATGC
Found at i:6889643 original size:24 final size:23
Alignment explanation
Indices: 6889573--6889671 Score: 76
Period size: 24 Copynumber: 4.2 Consensus size: 23
6889563 ATTAAAATTT
* * *
6889573 TATATTATTTAATTTGATTTAATA
1 TATATTATTTAAATTAATTT-TTA
*
6889597 TATCAGTT-TTTGAAATTATTTTTTA
1 TAT-A-TTATTT-AAATTAATTTTTA
*
6889622 TATATTATTTAATATTAATTTTTT
1 TATATTATTTAA-ATTAATTTTTA
* *
6889646 TATA-TATTTAAATAAATTTTGA
1 TATATTATTTAAATTAATTTTTA
6889668 TATA
1 TATA
6889672 AAATAATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
22 12 0.20
23 11 0.18
24 20 0.33
25 9 0.15
26 9 0.15
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (23 bp):
TATATTATTTAAATTAATTTTTA
Found at i:6893336 original size:14 final size:14
Alignment explanation
Indices: 6893317--6893346 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6893307 TTTTAAAACT
6893317 CTAAAAATCCTATC
1 CTAAAAATCCTATC
*
6893331 CTAAAAGTCCTATC
1 CTAAAAATCCTATC
6893345 CT
1 CT
6893347 GGTAAGATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.30, G:0.03, T:0.30
Consensus pattern (14 bp):
CTAAAAATCCTATC
Found at i:6895650 original size:222 final size:222
Alignment explanation
Indices: 6895264--6895713 Score: 882
Period size: 222 Copynumber: 2.0 Consensus size: 222
6895254 AATGAAAGTC
6895264 ATAAATAGTGGTTTTACTGAACAATTTTATGGCTTTGGAATATGTTTTCCCTAATTATTACAGTA
1 ATAAATAGTGGTTTTACTGAACAATTTTATGGCTTTGGAATATGTTTTCCCTAATTATTACAGTA
*
6895329 GAAAGTTTGGTTCATGCTGTTATATCAGAAATTTTACTTCTTCAAAGGGTGAAGTCGACATACAC
66 GAAAGTTTGGTTCATGCTGTTATATCAGAAATTTTACTTCTTCAAAGGGTGAAGACGACATACAC
6895394 ATTTTTGGTAAAAGGGATTCTCCCGCTTTATGTGTATGGTCTGTGATGGTTTGCTTAGGAGTATG
131 ATTTTTGGTAAAAGGGATTCTCCCGCTTTATGTGTATGGTCTGTGATGGTTTGCTTAGGAGTATG
6895459 TAATCCTTTTAAAGAAATAAAAGAAAA
196 TAATCCTTTTAAAGAAATAAAAGAAAA
*
6895486 ATAAATAGTGGTTTTACTGAACAATTTTATGGCTTTGGAGTATGTTTTCCCTAATTATTACAGTA
1 ATAAATAGTGGTTTTACTGAACAATTTTATGGCTTTGGAATATGTTTTCCCTAATTATTACAGTA
6895551 GAAAGTTTGGTTCATGCTGTTATATCAGAAATTTTACTTCTTCAAAGGGTGAAGACGACATACAC
66 GAAAGTTTGGTTCATGCTGTTATATCAGAAATTTTACTTCTTCAAAGGGTGAAGACGACATACAC
6895616 ATTTTTGGTAAAAGGGATTCTCCCGCTTTATGTGTATGGTCTGTGATGGTTTGCTTAGGAGTATG
131 ATTTTTGGTAAAAGGGATTCTCCCGCTTTATGTGTATGGTCTGTGATGGTTTGCTTAGGAGTATG
6895681 TAATCCTTTTAAAGAAATAAAAGAAAA
196 TAATCCTTTTAAAGAAATAAAAGAAAA
6895708 ATAAAT
1 ATAAAT
6895714 GACCGATCTT
Statistics
Matches: 226, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 226 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (222 bp):
ATAAATAGTGGTTTTACTGAACAATTTTATGGCTTTGGAATATGTTTTCCCTAATTATTACAGTA
GAAAGTTTGGTTCATGCTGTTATATCAGAAATTTTACTTCTTCAAAGGGTGAAGACGACATACAC
ATTTTTGGTAAAAGGGATTCTCCCGCTTTATGTGTATGGTCTGTGATGGTTTGCTTAGGAGTATG
TAATCCTTTTAAAGAAATAAAAGAAAA
Found at i:6901809 original size:12 final size:12
Alignment explanation
Indices: 6901794--6901855 Score: 67
Period size: 12 Copynumber: 5.3 Consensus size: 12
6901784 TTTTTAAATA
6901794 TAAATATATAAT
1 TAAATATATAAT
* *
6901806 TAAATAAATATT
1 TAAATATATAAT
6901818 TAAATATAT--T
1 TAAATATATAAT
*
6901828 TAAATATAAAAT
1 TAAATATATAAT
6901840 TAAATA-ATATAT
1 TAAATATATA-AT
6901852 TAAA
1 TAAA
6901856 AAATAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
10 9 0.21
11 2 0.05
12 31 0.74
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAATATATAAT
Found at i:6901816 original size:22 final size:23
Alignment explanation
Indices: 6901794--6901860 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 23
6901784 TTTTTAAATA
6901794 TAAATATATAATTAAATAAATATT
1 TAAATATATAATTAAATAAATA-T
*
6901818 TAAATATAT--TTAAATATAAAAT
1 TAAATATATAATTAAATA-AATAT
6901840 TAAATA-ATATATTAAA-AAATA
1 TAAATATATA-ATTAAATAAATA
6901861 ATTTTTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
21 2 0.05
22 17 0.46
23 4 0.11
24 14 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
TAAATATATAATTAAATAAATAT
Found at i:6901820 original size:30 final size:30
Alignment explanation
Indices: 6901770--6901861 Score: 87
Period size: 34 Copynumber: 2.9 Consensus size: 30
6901760 TAATCCAACC
*
6901770 TAAAATT-AATAAAATTTTTAAATATAAATA
1 TAAAATTAAAT-AAATATTTAAATATAAATA
*
6901800 TATAATTAAATAAATATTTAAATATATTTAAATA
1 TAAAATTAAATAAATATTT-AA-ATA--TAAATA
* *
6901834 TAAAATTAAATAATATATTAAAAAATAA
1 TAAAATTAAATAA-ATATTTAAATATAA
6901862 TTTTTTATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
30 13 0.25
31 8 0.16
32 3 0.06
33 2 0.04
34 20 0.39
35 5 0.10
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (30 bp):
TAAAATTAAATAAATATTTAAATATAAATA
Found at i:6902194 original size:2 final size:2
Alignment explanation
Indices: 6902189--6902219 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6902179 AACCAAAAAA
6902189 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6902220 GTAGCCATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6904397 original size:18 final size:18
Alignment explanation
Indices: 6904362--6904398 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6904352 AGAGAAGCCC
*
6904362 TAACTGTTAACTCAGTGT
1 TAACTGTTAAATCAGTGT
*
6904380 TAACTGTTAAATCGGTGT
1 TAACTGTTAAATCAGTGT
6904398 T
1 T
6904399 GTTTACTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (18 bp):
TAACTGTTAAATCAGTGT
Found at i:6911502 original size:151 final size:151
Alignment explanation
Indices: 6911228--6911530 Score: 570
Period size: 151 Copynumber: 2.0 Consensus size: 151
6911218 CCTTAAAGGC
*
6911228 TTAAAGCTTTCAAGCATTCTTCCATTCAAAAGCACTGAGATTAAAAGTGATGAGATATAGCTCAT
1 TTAAAGCTTTCAAGCATTCCTCCATTCAAAAGCACTGAGATTAAAAGTGATGAGATATAGCTCAT
* *
6911293 GATGAGGTGAATAAGGGATATAGGTATGTCAAAGAAAGACAAAACCTTTCTAATAAAACTTCATT
66 GATAAGGTGAATAAGGGATATAGGTATGTCAAAGAAAGACAAAACCTTTCTAATAAAACTTCACT
6911358 CAAGTCTATCATAAGCTTTTT
131 CAAGTCTATCATAAGCTTTTT
6911379 TTAAAGCTTTCAAGCATTCCTCCATTCAAAAGCACTGAGATTAAAAGTGATGAGATATAGCTCAT
1 TTAAAGCTTTCAAGCATTCCTCCATTCAAAAGCACTGAGATTAAAAGTGATGAGATATAGCTCAT
*
6911444 GATAAGGTGAATAAGGGATATAGGTATGTCAAAGAAAGACAAAACCTTTCTGATAAAACTTCACT
66 GATAAGGTGAATAAGGGATATAGGTATGTCAAAGAAAGACAAAACCTTTCTAATAAAACTTCACT
6911509 CAAGTCTATCATAAGCTTTTT
131 CAAGTCTATCATAAGCTTTTT
6911530 T
1 T
6911531 CAGATCCAGT
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 148 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (151 bp):
TTAAAGCTTTCAAGCATTCCTCCATTCAAAAGCACTGAGATTAAAAGTGATGAGATATAGCTCAT
GATAAGGTGAATAAGGGATATAGGTATGTCAAAGAAAGACAAAACCTTTCTAATAAAACTTCACT
CAAGTCTATCATAAGCTTTTT
Found at i:6917143 original size:28 final size:28
Alignment explanation
Indices: 6917074--6917143 Score: 70
Period size: 30 Copynumber: 2.4 Consensus size: 28
6917064 AAGACCTCTG
* * *
6917074 ATCTTTACAAATCCTAACCCAAGATTTT
1 ATCTTTACTAACCCTAACCCAAGATTAT
*
6917102 ACTTTTATACTAACCCTAA-CCAAGGATTAT
1 A-TCTT-TACTAACCCTAACCCAA-GATTAT
6917132 ATCTTTACTAAC
1 ATCTTTACTAAC
6917144 AACCATTTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
28 8 0.24
29 10 0.29
30 16 0.47
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (28 bp):
ATCTTTACTAACCCTAACCCAAGATTAT
Found at i:6932481 original size:18 final size:17
Alignment explanation
Indices: 6932448--6932483 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6932438 TCAATAATTA
6932448 AAAAAAAAAAAGAAGAG
1 AAAAAAAAAAAGAAGAG
*
6932465 AAAAATAAAAAGCAAGAG
1 AAAAAAAAAAAG-AAGAG
6932483 A
1 A
6932484 TTACTAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.03
Consensus pattern (17 bp):
AAAAAAAAAAAGAAGAG
Found at i:6944881 original size:18 final size:17
Alignment explanation
Indices: 6944858--6944892 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
6944848 AAATTAAAAA
6944858 TTTATTTCTTTTATTTTT
1 TTTATTT-TTTTATTTTT
*
6944876 TTTATTTTTTTCTTTTT
1 TTTATTTTTTTATTTTT
6944893 CTTCGATCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTATTTTTTTATTTTT
Found at i:6948075 original size:3 final size:3
Alignment explanation
Indices: 6948067--6948100 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
6948057 AGAAAAGCAA
6948067 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
6948101 TATTGCACCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6957192 original size:14 final size:14
Alignment explanation
Indices: 6957173--6957199 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6957163 GATCAGCTAT
6957173 ATGAAAAACCAAAC
1 ATGAAAAACCAAAC
6957187 ATGAAAAACCAAA
1 ATGAAAAACCAAA
6957200 TGGTTCAGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.19, G:0.07, T:0.07
Consensus pattern (14 bp):
ATGAAAAACCAAAC
Found at i:6966582 original size:21 final size:21
Alignment explanation
Indices: 6966540--6966583 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
6966530 TTTTTACGTT
**
6966540 TCAAAAATAAATTTTCTATTA
1 TCAAAAATAAATTTAATATTA
*
6966561 TCAAAAATAAATTTAATGTTA
1 TCAAAAATAAATTTAATATTA
6966582 TC
1 TC
6966584 TGATCTGGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (21 bp):
TCAAAAATAAATTTAATATTA
Found at i:6968456 original size:34 final size:31
Alignment explanation
Indices: 6968412--6968485 Score: 78
Period size: 34 Copynumber: 2.3 Consensus size: 31
6968402 GGTTTTTTTC
*
6968412 AAATAA-TATTAATATAACTATTAAAATATTAA
1 AAATAATTATTAATAAAACTATT--AATATTAA
* * *
6968444 AATATATTTATTATTAAAATTATTAATATTAA
1 AA-ATAATTATTAATAAAACTATTAATATTAA
6968476 AAATAATTAT
1 AAATAATTAT
6968486 ATTTTAATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
31 7 0.20
32 12 0.34
33 3 0.09
34 13 0.37
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (31 bp):
AAATAATTATTAATAAAACTATTAATATTAA
Found at i:6968475 original size:15 final size:17
Alignment explanation
Indices: 6968436--6968534 Score: 78
Period size: 17 Copynumber: 5.7 Consensus size: 17
6968426 TAACTATTAA
6968436 AATATTAAAATATATTT
1 AATATTAAAATATATTT
*
6968453 ATTATTAAAAT-TA-TT
1 AATATTAAAATATATTT
*
6968468 AATATTAAAA-ATAATT
1 AATATTAAAATATATTT
*
6968484 ATATTTTAATAATAATATTT
1 A-ATATTAA-AAT-ATATTT
**
6968504 TGTATTAAAATATTATGTT
1 AATATTAAAATA-TAT-TT
*
6968523 AATATAAAAATA
1 AATATTAAAATA
6968535 CTTAAAATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
15 13 0.20
16 5 0.08
17 17 0.27
18 8 0.12
19 16 0.25
20 5 0.08
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
AATATTAAAATATATTT
Found at i:6968585 original size:5 final size:5
Alignment explanation
Indices: 6968561--6968639 Score: 58
Period size: 5 Copynumber: 16.0 Consensus size: 5
6968551 TTATTATTCT
* *
6968561 TTATA TTAT- TTATGA ATATA TTATA TTAT- TTATGA ATATA TTATA TTAATA
1 TTATA TTATA TTAT-A TTATA TTATA TTATA TTAT-A TTATA TTATA TT-ATA
* * *
6968612 ATATA TTAT- TAATA TAATA TTAT- TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA
6968640 AATAAAATTA
Statistics
Matches: 59, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
4 15 0.25
5 34 0.58
6 10 0.17
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (5 bp):
TTATA
Found at i:6968586 original size:20 final size:20
Alignment explanation
Indices: 6968561--6968608 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
6968551 TTATTATTCT
6968561 TTATATTATTTATGAATATA
1 TTATATTATTTATGAATATA
6968581 TTATATTATTTATGAATATA
1 TTATATTATTTATGAATATA
6968601 TTATATTA
1 TTATATTA
6968609 ATAATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (20 bp):
TTATATTATTTATGAATATA
Found at i:6968621 original size:14 final size:14
Alignment explanation
Indices: 6968582--6968640 Score: 57
Period size: 14 Copynumber: 4.0 Consensus size: 14
6968572 ATGAATATAT
*
6968582 TATATTATTTATGAA
1 TATATTATTAAT-AA
6968597 TATATTATATTAATAA
1 TATA-T-TATTAATAA
6968613 TATATTATTAAT-A
1 TATATTATTAATAA
*
6968626 TAATATTATTTATAA
1 T-ATATTATTAATAA
6968641 ATAAAATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 2 0.05
14 17 0.45
15 6 0.16
16 7 0.18
17 6 0.16
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
TATATTATTAATAA
Found at i:6968643 original size:18 final size:19
Alignment explanation
Indices: 6968607--6968662 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 19
6968597 TATATTATAT
* *
6968607 TAATAATATATTATTAATA
1 TAATATTATATTATAAATA
6968626 TAATATTAT-TTATAAATA
1 TAATATTATATTATAAATA
*
6968644 -AA-ATTATGTTAATAAATA
1 TAATATTATATT-ATAAATA
6968662 T
1 T
6968663 TGATAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 5 0.16
17 4 0.12
18 15 0.47
19 8 0.25
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
TAATATTATATTATAAATA
Found at i:6968644 original size:16 final size:16
Alignment explanation
Indices: 6968563--6968661 Score: 64
Period size: 16 Copynumber: 6.0 Consensus size: 16
6968553 ATTATTCTTT
6968563 ATATTATTTATGAATATA
1 ATATTATTTAT-AA-ATA
*
6968581 TTATATTATTTATGAAT-
1 --ATATTATTTATAAATA
6968598 ATATTATATTA-ATAAT-
1 ATATTAT-TTATA-AATA
*
6968614 ATATTA-TTA-ATATA
1 ATATTATTTATAAATA
6968628 ATATTATTTATAAATA
1 ATATTATTTATAAATA
*
6968644 AAATTATGTTAATAAATA
1 ATATTAT-TT-ATAAATA
6968662 TTGATAAATA
Statistics
Matches: 67, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
13 2 0.03
14 10 0.15
15 10 0.15
16 22 0.33
17 2 0.03
18 9 0.13
19 1 0.01
20 11 0.16
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
ATATTATTTATAAATA
Found at i:6968663 original size:45 final size:45
Alignment explanation
Indices: 6968578--6968663 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
6968568 ATTTATGAAT
* * *
6968578 ATATTATATTATTTATGAATATATTATATTAATAATATATTATTA
1 ATATAATATTATTTATAAATAAATTATATTAATAATATATTATTA
*
6968623 ATATAATATTATTTATAAATAAAATTATGTTAATAA-ATATT
1 ATATAATATTATTTATAAAT-AAATTATATTAATAATATATT
6968664 GATAAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
45 23 0.64
46 13 0.36
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (45 bp):
ATATAATATTATTTATAAATAAATTATATTAATAATATATTATTA
Found at i:6972607 original size:2 final size:2
Alignment explanation
Indices: 6972600--6972633 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6972590 ATGACTTCTG
6972600 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6972634 CATACATGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6982955 original size:2 final size:2
Alignment explanation
Indices: 6982943--6982991 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
6982933 ATTTCTCTTA
6982943 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
6982984 AT AC AT AT
1 AT AT AT AT
6982992 CCAAATCAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6987684 original size:2 final size:2
Alignment explanation
Indices: 6987677--6987701 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6987667 TTTATGTATC
6987677 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6987702 GAACGATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7004822 original size:29 final size:29
Alignment explanation
Indices: 7004721--7004818 Score: 96
Period size: 29 Copynumber: 3.5 Consensus size: 29
7004711 AATAAACATG
* **
7004721 AATA-ATATGAATAATACGAATAT-TACA
1 AATAGATATGATTAATATTAATATATACA
* ** *
7004748 AATAGACACAATTAATATTGATATATACA
1 AATAGATATGATTAATATTAATATATACA
*
7004777 AATAGATATGATTAATATTAATATATATA
1 AATAGATATGATTAATATTAATATATACA
7004806 AA-A-ATATGATTAA
1 AATAGATATGATTAA
7004819 AATAATAAAT
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
27 14 0.25
28 13 0.23
29 30 0.53
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (29 bp):
AATAGATATGATTAATATTAATATATACA
Found at i:7013315 original size:23 final size:23
Alignment explanation
Indices: 7013285--7013334 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
7013275 CACATAATCA
7013285 ATTATTAAAAAAATTAATTATTC
1 ATTATTAAAAAAATTAATTATTC
* * * *
7013308 ATTATTAAATAATTTATTTATTT
1 ATTATTAAAAAAATTAATTATTC
7013331 ATTA
1 ATTA
7013335 AAACTAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTATTAAAAAAATTAATTATTC
Found at i:7017055 original size:6 final size:6
Alignment explanation
Indices: 7017049--7017080 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
7017039 GCAGCTCCAG
*
7017049 CAGCAG CAGCAA CAGCAA CAGCAA CAGCAA CA
1 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CA
7017081 AGAGCATTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.47, C:0.34, G:0.19, T:0.00
Consensus pattern (6 bp):
CAGCAA
Found at i:7019645 original size:3 final size:3
Alignment explanation
Indices: 7019637--7019672 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7019627 ATTTTCTTAT
7019637 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7019673 CATTGTCGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7020595 original size:15 final size:14
Alignment explanation
Indices: 7020570--7020628 Score: 50
Period size: 14 Copynumber: 4.1 Consensus size: 14
7020560 ACAAATTTAA
*
7020570 AAAATACATAAATAT
1 AAAATAAATAAA-AT
*
7020585 TAAATAAATAAAAT
1 AAAATAAATAAAAT
7020599 AAAATAAA-ACAAA-
1 AAAATAAATA-AAAT
*
7020612 CAAATAAAGTAAAAT
1 AAAATAAA-TAAAAT
7020627 AA
1 AA
7020629 TTAATAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
13 8 0.23
14 15 0.43
15 12 0.34
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:7021754 original size:10 final size:10
Alignment explanation
Indices: 7021741--7021770 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7021731 ATCAAATTTT
7021741 TATATTTTAA
1 TATATTTTAA
7021751 TATATTTTAA
1 TATATTTTAA
7021761 T-TATTTTAA
1 TATATTTTAA
7021770 T
1 T
7021771 TAATAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTTAA
Found at i:7021767 original size:9 final size:9
Alignment explanation
Indices: 7021743--7021772 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
7021733 CAAATTTTTA
7021743 TATTTTAAT
1 TATTTTAAT
7021752 ATATTTTAAT
1 -TATTTTAAT
7021762 TATTTTAAT
1 TATTTTAAT
7021771 TA
1 TA
7021773 ATAAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTAAT
Found at i:7026771 original size:76 final size:77
Alignment explanation
Indices: 7026641--7026793 Score: 272
Period size: 76 Copynumber: 2.0 Consensus size: 77
7026631 TCCAATTCTC
7026641 TAAGGTTACAACTCTTTGTATGAAAAAAAAAAAAGTTTAACATTGAATATTCTAATCCATATAAC
1 TAAGGTTACAACTCTTTGTATG-AAAAAAAAAAAGTTTAACATTGAATATTCTAATCCATATAAC
*
7026706 AAGGAATTGGATT
65 AAGAAATTGGATT
*
7026719 TAAGGTTACAATTCTTTGTATG-AAAAAAAAAAGTTTAACATTGAATATTCTAATCCATATAACA
1 TAAGGTTACAACTCTTTGTATGAAAAAAAAAAAGTTTAACATTGAATATTCTAATCCATATAACA
7026783 AGAAATTGGAT
66 AGAAATTGGAT
7026794 GGTAACTTGA
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
76 52 0.71
78 21 0.29
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (77 bp):
TAAGGTTACAACTCTTTGTATGAAAAAAAAAAAGTTTAACATTGAATATTCTAATCCATATAACA
AGAAATTGGATT
Found at i:7039615 original size:20 final size:19
Alignment explanation
Indices: 7039578--7039620 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
7039568 ATTAATAATT
7039578 TATTTTAAATTTATAAATA
1 TATTTTAAATTTATAAATA
7039597 TATTTTAATATTT-TAAA-A
1 TATTTTAA-ATTTATAAATA
7039615 TATTTT
1 TATTTT
7039621 CGAGTTATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.30
19 12 0.52
20 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATTTTAAATTTATAAATA
Found at i:7070228 original size:2 final size:2
Alignment explanation
Indices: 7070221--7070267 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
7070211 AAGTGTAAGT
*
7070221 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7070263 TC TC T
1 TC TC T
7070268 GTATGTTTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:7074693 original size:22 final size:22
Alignment explanation
Indices: 7074647--7074710 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
7074637 TTTTTGTCTC
* **
7074647 AAAAATATGTTTTTAACA-TTT
1 AAAAATATTTTTTTATGATTTT
*
7074668 AAAACT-TTTATTTTAT-ATTTT
1 AAAAATATTT-TTTTATGATTTT
7074689 AAAAATATTTTTTTATGATTTT
1 AAAAATATTTTTTTATGATTTT
7074711 TATTTTTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.09
21 24 0.69
22 8 0.23
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (22 bp):
AAAAATATTTTTTTATGATTTT
Found at i:7074800 original size:16 final size:15
Alignment explanation
Indices: 7074761--7074803 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
7074751 AAAAAAAATT
*
7074761 AAATTTTAATATTAA
1 AAATTTTAAAATTAA
*
7074776 ATATTTTAAAATTAA
1 AAATTTTAAAATTAA
*
7074791 AAATTTTTAAATT
1 AAATTTTAAAATT
7074804 TCATAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTTTAAAATTAA
Found at i:7078016 original size:15 final size:16
Alignment explanation
Indices: 7077973--7078016 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7077963 CTAAATCGAA
7077973 TAAAATTATATATATT
1 TAAAATTATATATATT
*
7077989 TAATA-TATATATATTT
1 TAAAATTATATATA-TT
*
7078005 TAAAATTTTATA
1 TAAAATTATATA
7078017 AAATAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 8 0.35
16 10 0.43
17 5 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAAAATTATATATATT
Found at i:7078045 original size:13 final size:13
Alignment explanation
Indices: 7078029--7078070 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
7078019 ATAAAATAAT
7078029 AATTTTATATTAA
1 AATTTTATATTAA
7078042 AATTTTATATTAA
1 AATTTTATATTAA
**
7078055 AATAATATA-TAA
1 AATTTTATATTAA
7078067 AATT
1 AATT
7078071 AATAAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AATTTTATATTAA
Found at i:7078073 original size:13 final size:14
Alignment explanation
Indices: 7078034--7078081 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
7078024 ATAATAATTT
*
7078034 TATATTAAAATT-T
1 TATATTAAAATTAA
7078047 TATATTAAAA-TAA
1 TATATTAAAATTAA
7078060 TATA-TAAAATTAA
1 TATATTAAAATTAA
*
7078073 TAAATTAAA
1 TATATTAAA
7078082 CTGAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
12 6 0.20
13 20 0.67
14 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TATATTAAAATTAA
Found at i:7079071 original size:6 final size:6
Alignment explanation
Indices: 7079060--7079090 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
7079050 TATGCCGAAT
*
7079060 CTGAAA CTGAAA CTGAAA CTGAAA CCGAAA C
1 CTGAAA CTGAAA CTGAAA CTGAAA CTGAAA C
7079091 GAGATCGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.48, C:0.23, G:0.16, T:0.13
Consensus pattern (6 bp):
CTGAAA
Found at i:7085587 original size:18 final size:19
Alignment explanation
Indices: 7085552--7085589 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
7085542 GTATTTTATA
7085552 TATTTAATAAATAAAATTT
1 TATTTAATAAATAAAATTT
*
7085571 TATTTAAT-AATACAATTT
1 TATTTAATAAATAAAATTT
7085589 T
1 T
7085590 TTATTTTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTTAATAAATAAAATTT
Found at i:7085590 original size:19 final size:20
Alignment explanation
Indices: 7085552--7085595 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
7085542 GTATTTTATA
7085552 TATTTAATAAATAAA-ATTT
1 TATTTAATAAATAAATATTT
*
7085571 TATTTAAT-AATACAATTTTT
1 TATTTAATAAATA-AATATTT
7085591 TATTT
1 TATTT
7085596 TAGATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 10 0.45
20 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTTAATAAATAAATATTT
Found at i:7085798 original size:18 final size:20
Alignment explanation
Indices: 7085763--7085801 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
7085753 GCTAGATCAA
*
7085763 ATATATTTCTATTTAAAAAT
1 ATATATTTCTATTAAAAAAT
*
7085783 ATATATTT-TATAAAAAAAT
1 ATATATTTCTATTAAAAAAT
7085802 TACATGTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATATTTCTATTAAAAAAT
Found at i:7089972 original size:17 final size:15
Alignment explanation
Indices: 7089926--7089978 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 15
7089916 AATAATTTAT
*
7089926 TTATTAAATATTTAAA
1 TTATT-AATATATAAA
*
7089942 TTATTAATAAATAAA
1 TTATTAATATATAAA
7089957 TTATATCAATATATAAA
1 TTAT-T-AATATATAAA
7089974 TTATT
1 TTATT
7089979 TTTATTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 12 0.38
16 7 0.22
17 13 0.41
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATTAATATATAAA
Found at i:7094278 original size:6 final size:7
Alignment explanation
Indices: 7094259--7094283 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7094249 GTCCCATTAC
7094259 AGAAAAA
1 AGAAAAA
7094266 AGAAAAA
1 AGAAAAA
7094273 AGAAAAA
1 AGAAAAA
7094280 AGAA
1 AGAA
7094284 GATAACCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Found at i:7096751 original size:27 final size:26
Alignment explanation
Indices: 7096712--7096769 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
7096702 AGAATAAAAT
* * * *
7096712 TATAAGAAGAATTAATTATTCTTTTAG
1 TATAAAAAAAATTAATCATT-TCTTAG
7096739 TATAAAAAAAATTAATCATTTCTTAG
1 TATAAAAAAAATTAATCATTTCTTAG
7096765 TATAA
1 TATAA
7096770 GATGATTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (26 bp):
TATAAAAAAAATTAATCATTTCTTAG
Found at i:7096914 original size:23 final size:23
Alignment explanation
Indices: 7096891--7096941 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 23
7096881 TTTGAAAAAA
7096891 TATAATTTTTATTAATAAATAAAT
1 TATAA-TTTTATTAATAAATAAAT
*
7096915 TTTAATTTTATTAATAAATAAAAT
1 TATAATTTTATTAATAAAT-AAAT
7096939 TAT
1 TAT
7096942 TCTATCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TATAATTTTATTAATAAATAAAT
Found at i:7097727 original size:2 final size:2
Alignment explanation
Indices: 7097720--7097759 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7097710 TACAACATAC
7097720 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7097760 GGCAGGCAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7100840 original size:11 final size:11
Alignment explanation
Indices: 7100803--7100844 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
7100793 ATAATATTTT
7100803 TTATTTTTATA
1 TTATTTTTATA
*
7100814 TAATTTTTAT-
1 TTATTTTTATA
*
7100824 TGTATTATTATA
1 T-TATTTTTATA
7100836 TTATTTTTA
1 TTATTTTTA
7100845 AAATTATAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:7101559 original size:27 final size:25
Alignment explanation
Indices: 7101529--7101579 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
7101519 AAGTTATATT
7101529 AATAATTTAAATTATATAAATTAAAAA
1 AATAATTTAAATTA-ATAAA-TAAAAA
*
7101556 AATAATTTTAATTAATAAATAAAA
1 AATAATTTAAATTAATAAATAAAA
7101580 TTATAGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 5 0.22
27 13 0.57
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
AATAATTTAAATTAATAAATAAAAA
Found at i:7105648 original size:11 final size:11
Alignment explanation
Indices: 7105611--7105652 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
7105601 ATATTATTTT
7105611 TTATTTTTATA
1 TTATTTTTATA
*
7105622 TAATTTTTAT-
1 TTATTTTTATA
*
7105632 TGTATTGTTATA
1 T-TATTTTTATA
7105644 TTATTTTTA
1 TTATTTTTA
7105653 AAATTATCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:7106922 original size:14 final size:14
Alignment explanation
Indices: 7106903--7106946 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
7106893 CATTTGGTTT
7106903 ATTACTTAAATAAA
1 ATTACTTAAATAAA
7106917 ATTACTTAAATAAA
1 ATTACTTAAATAAA
*
7106931 ATTAAATTAAATAAA
1 ATT-ACTTAAATAAA
7106946 A
1 A
7106947 AATTTTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (14 bp):
ATTACTTAAATAAA
Found at i:7112054 original size:24 final size:22
Alignment explanation
Indices: 7112002--7112055 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
7111992 AAAAATATTT
* *
7112002 AATAAAAAAATTTAAATCGATA
1 AATAATAAAATTTAAATAGATA
*
7112024 AATTAATAAAATTTAATATGAGATC
1 AA-TAATAAAATTTAA-AT-AGATA
7112049 AATAATA
1 AATAATA
7112056 TGTAAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 2 0.08
23 12 0.46
24 7 0.27
25 5 0.19
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (22 bp):
AATAATAAAATTTAAATAGATA
Found at i:7118431 original size:2 final size:2
Alignment explanation
Indices: 7118424--7118456 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7118414 CTATTGATTA
*
7118424 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7118457 AATTTAGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7141273 original size:14 final size:14
Alignment explanation
Indices: 7141254--7141281 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7141244 TGTTCACTTG
7141254 TCTAAAAGTTGACA
1 TCTAAAAGTTGACA
7141268 TCTAAAAGTTGACA
1 TCTAAAAGTTGACA
7141282 ATCGCACACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
TCTAAAAGTTGACA
Found at i:7142690 original size:2 final size:2
Alignment explanation
Indices: 7142683--7142721 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7142673 CTGTTTCAAG
*
7142683 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7142722 GAGGAAATTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7145532 original size:2 final size:2
Alignment explanation
Indices: 7145525--7145549 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7145515 AAGAATGTGG
7145525 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7145550 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7151411 original size:2 final size:2
Alignment explanation
Indices: 7151404--7151429 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7151394 TGGTATGTGC
7151404 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7151430 CATCTAGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7153923 original size:10 final size:10
Alignment explanation
Indices: 7153904--7154045 Score: 90
Period size: 11 Copynumber: 13.5 Consensus size: 10
7153894 TATAATTTTG
*
7153904 ATTTTAATAA
1 ATTTTGATAA
*
7153914 CTTTTGATAAA
1 ATTTTGAT-AA
7153925 ATTTTGATAA
1 ATTTTGATAA
7153935 ATTTTGATACA
1 ATTTTGATA-A
*
7153946 ATTTTGGTAA
1 ATTTTGATAA
* *
7153956 CTATTGATACA
1 ATTTTGATA-A
*
7153967 ATTTTGGTAA
1 ATTTTGATAA
*
7153977 TTTTTGATAAA
1 ATTTTGAT-AA
7153988 ATTTT-AGTAA
1 ATTTTGA-TAA
7153998 TATTTTGATATA
1 -ATTTTGATA-A
7154010 ATTTT-AGTAA
1 ATTTTGA-TAA
* *
7154020 TTTTTTAATAA
1 -ATTTTGATAA
* *
7154031 CTTATGATAA
1 ATTTTGATAA
7154041 ATTTT
1 ATTTT
7154046 TTGTAGTTAT
Statistics
Matches: 102, Mismatches: 19, Indels: 22
0.71 0.13 0.15
Matches are distributed among these distances:
10 46 0.45
11 53 0.52
12 3 0.03
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.51
Consensus pattern (10 bp):
ATTTTGATAA
Found at i:7153934 original size:21 final size:21
Alignment explanation
Indices: 7153904--7154014 Score: 107
Period size: 21 Copynumber: 5.2 Consensus size: 21
7153894 TATAATTTTG
* *
7153904 ATTTTAATAACTTTTGATAAA
1 ATTTTGATAAATTTTGATAAA
*
7153925 ATTTTGATAAATTTTGATACA
1 ATTTTGATAAATTTTGATAAA
* * * *
7153946 ATTTTGGTAACTATTGATACA
1 ATTTTGATAAATTTTGATAAA
* *
7153967 ATTTTGGTAATTTTTGATAAA
1 ATTTTGATAAATTTTGATAAA
*
7153988 ATTTT-AGTAATATTTTGATATA
1 ATTTTGA-TAA-ATTTTGATAAA
7154010 ATTTT
1 ATTTT
7154015 AGTAATTTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
21 62 0.82
22 14 0.18
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (21 bp):
ATTTTGATAAATTTTGATAAA
Found at i:7153963 original size:42 final size:42
Alignment explanation
Indices: 7153904--7154001 Score: 126
Period size: 42 Copynumber: 2.4 Consensus size: 42
7153894 TATAATTTTG
* * *
7153904 ATTTTAATAACTTTTGATAAAATTTTGATAAATTTTGATACA
1 ATTTTAGTAACTATTGATAAAATTTTGATAAATTTTGATAAA
* * * *
7153946 ATTTTGGTAACTATTGATACAATTTTGGTAATTTTTGATAAA
1 ATTTTAGTAACTATTGATAAAATTTTGATAAATTTTGATAAA
7153988 ATTTTAGTAA-TATT
1 ATTTTAGTAACTATT
7154002 TTGATATAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 4 0.08
42 44 0.92
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (42 bp):
ATTTTAGTAACTATTGATAAAATTTTGATAAATTTTGATAAA
Found at i:7154427 original size:22 final size:22
Alignment explanation
Indices: 7154361--7154592 Score: 148
Period size: 22 Copynumber: 10.5 Consensus size: 22
7154351 TACTATTATT
*
7154361 TTATCAATAATTTATTACTAAA
1 TTATCAATGATTTATTACTAAA
* * *
7154383 CTATCAATGATATATTGCTAAA
1 TTATCAATGATTTATTACTAAA
* *
7154405 TTATCAATAATTTACTACTAAA
1 TTATCAATGATTTATTACTAAA
* *
7154427 TTAGT-ATTGATTTATTACTAAT
1 TTA-TCAATGATTTATTACTAAA
* * *
7154449 TTATGAATGATTTGTTACTAAG
1 TTATCAATGATTTATTACTAAA
* * * *
7154471 TTATGACTCATTTATTATTAAA
1 TTATCAATGATTTATTACTAAA
* ** * *
7154493 TTGTTGATAATTTACTACTAAA
1 TTATCAATGATTTATTACTAAA
* *
7154515 TTA-CTAATAATTTGTTA-TAAAA
1 TTATC-AATGATTTATTACT-AAA
* * *
7154537 TTAT-AATTGATTTACTATTAAT
1 TTATCAA-TGATTTATTACTAAA
* * *
7154559 TTATCTATGATTTACTACAAAA
1 TTATCAATGATTTATTACTAAA
7154581 TTATCAATGATT
1 TTATCAATGATT
7154593 AACTAATTTG
Statistics
Matches: 160, Mismatches: 42, Indels: 16
0.73 0.19 0.07
Matches are distributed among these distances:
21 4 0.03
22 153 0.96
23 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (22 bp):
TTATCAATGATTTATTACTAAA
Found at i:7154612 original size:74 final size:74
Alignment explanation
Indices: 7154522--7154662 Score: 189
Period size: 74 Copynumber: 1.9 Consensus size: 74
7154512 AAATTACTAA
* * *
7154522 TAATTTGTTATAAAATTAT-AATTGATTTACT-ATTAATTTATCTA-TGATTTACTACAAAATTA
1 TAATTTGTTATAAAATTATCAATT-ATTTA-TAACTAAATTAT-TAGTAATTTACTACAAAATTA
7154584 TCAATGATTAAC
63 TCAATGATTAAC
* *
7154596 TAATTTGTTATTAAATTATCACTTATTTATAACTAAATTATTAGTAATTTACTACAAAATTATCA
1 TAATTTGTTATAAAATTATCAATTATTTATAACTAAATTATTAGTAATTTACTACAAAATTATCA
7154661 AT
66 AT
7154663 AATTTACATC
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
73 3 0.05
74 53 0.90
75 3 0.05
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (74 bp):
TAATTTGTTATAAAATTATCAATTATTTATAACTAAATTATTAGTAATTTACTACAAAATTATCA
ATGATTAAC
Found at i:7154645 original size:22 final size:22
Alignment explanation
Indices: 7154630--7154693 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
7154620 ATTTATAACT
* *
7154630 AAATTATTAGTAATTTACTACA
1 AAATTATCAATAATTTACTACA
7154652 AAATTATCAATAATTTAC-ATCA
1 AAATTATCAATAATTTACTA-CA
*
7154674 AAATTATCAATGATTTACTA
1 AAATTATCAATAATTTACTA
7154694 AATGTTATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (22 bp):
AAATTATCAATAATTTACTACA
Found at i:7154819 original size:22 final size:20
Alignment explanation
Indices: 7154792--7154857 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
7154782 AAAATTAACT
*
7154792 ATAATTTATTATCAAGTTATC
1 ATAATTTA-TATTAAGTTATC
*
7154813 ATCAATTTATATTAAATTATCC
1 AT-AATTTATATTAAGTTAT-C
*
7154835 ATGATTTACTATTAAGTTATC
1 ATAATTTA-TATTAAGTTATC
7154856 AT
1 AT
7154858 TGATTAACTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
21 19 0.50
22 19 0.50
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.47
Consensus pattern (20 bp):
ATAATTTATATTAAGTTATC
Found at i:7154861 original size:22 final size:22
Alignment explanation
Indices: 7154793--7155065 Score: 155
Period size: 22 Copynumber: 12.3 Consensus size: 22
7154783 AAATTAACTA
* *
7154793 TAATTTATTATCAAGTTATCAT
1 TAATTTACTATTAAGTTATCAT
* *
7154815 CAATTTA-TATTAAATTATCCA-
1 TAATTTACTATTAAGTTAT-CAT
*
7154836 TGATTTACTATTAAGTTATCAT
1 TAATTTACTATTAAGTTATCAT
* * * * *
7154858 TGATTAACTATTAATTTATTAA
1 TAATTTACTATTAAGTTATCAT
*
7154880 TAATTAACTACTACTAAGTTAT-AT
1 TAATT---TACTATTAAGTTATCAT
* * * *
7154904 TAATTTACTTTTAAATTTTCAA
1 TAATTTACTATTAAGTTATCAT
* * * *
7154926 TGATTAATTATTAAATTATCAT
1 TAATTTACTATTAAGTTATCAT
*
7154948 TAATTTACTGTTAAGTTAT--T
1 TAATTTACTATTAAGTTATCAT
* * * *
7154968 TATGACTTACCACTAAACTTATCAAT
1 TA--ATTTACTA-TTAAGTTATC-AT
* *
7154994 TAA-TTACTATTAAATTGA-AAT
1 TAATTTACTATTAAGTT-ATCAT
* * *
7155015 TAATTTACTATTTATTTATCAC
1 TAATTTACTATTAAGTTATCAT
7155037 TAATTTACTATTAAGTTATCAT
1 TAATTTACTATTAAGTTATCAT
7155059 TAATTTA
1 TAATTTA
7155066 TTAGAAATTA
Statistics
Matches: 188, Mismatches: 47, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
20 3 0.02
21 32 0.17
22 119 0.63
23 13 0.07
24 7 0.04
25 11 0.06
26 3 0.02
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (22 bp):
TAATTTACTATTAAGTTATCAT
Found at i:7158986 original size:20 final size:21
Alignment explanation
Indices: 7158949--7158992 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
7158939 TAAATAAATT
7158949 AATAAAAGTTATATATTTAAA
1 AATAAAAGTTATATATTTAAA
7158970 AATAAAA-TTAT-TAATTTAAA
1 AATAAAAGTTATAT-ATTTAAA
7158990 AAT
1 AAT
7158993 TTATAGGATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 1 0.05
20 14 0.64
21 7 0.32
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
AATAAAAGTTATATATTTAAA
Found at i:7169060 original size:84 final size:84
Alignment explanation
Indices: 7168919--7169087 Score: 338
Period size: 84 Copynumber: 2.0 Consensus size: 84
7168909 TGCCAAAAAA
7168919 AAAAGGTGAAAAACCGTGGAGCTGAGGGTAAGATAAAAATGGGATTTTTCACTTTTTTCCTCCCA
1 AAAAGGTGAAAAACCGTGGAGCTGAGGGTAAGATAAAAATGGGATTTTTCACTTTTTTCCTCCCA
7168984 TTGAGAAGGAAGGCGTAAC
66 TTGAGAAGGAAGGCGTAAC
7169003 AAAAGGTGAAAAACCGTGGAGCTGAGGGTAAGATAAAAATGGGATTTTTCACTTTTTTCCTCCCA
1 AAAAGGTGAAAAACCGTGGAGCTGAGGGTAAGATAAAAATGGGATTTTTCACTTTTTTCCTCCCA
7169068 TTGAGAAGGAAGGCGTAAC
66 TTGAGAAGGAAGGCGTAAC
7169087 A
1 A
7169088 GAGAAGAGAA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (84 bp):
AAAAGGTGAAAAACCGTGGAGCTGAGGGTAAGATAAAAATGGGATTTTTCACTTTTTTCCTCCCA
TTGAGAAGGAAGGCGTAAC
Found at i:7170908 original size:28 final size:28
Alignment explanation
Indices: 7170867--7170926 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
7170857 TAAATAAAAC
* **
7170867 TGATATGTAAAAGAACACGGTAGATGCA
1 TGATATATAAAAGAACACAATAGATGCA
* *
7170895 TGATATATAGAAGAACACAATAGGTGCA
1 TGATATATAAAAGAACACAATAGATGCA
7170923 TGAT
1 TGAT
7170927 GTGAATTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (28 bp):
TGATATATAAAAGAACACAATAGATGCA
Found at i:7190039 original size:2 final size:2
Alignment explanation
Indices: 7190032--7190085 Score: 67
Period size: 2 Copynumber: 26.5 Consensus size: 2
7190022 CTAGTTGATG
7190032 AT AT AT AT AT AT AT AT AT AT AT AT A- AT CAT CA- ACT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT -AT A-T AT AT AT
7190073 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
7190086 AAATAAATTG
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
1 2 0.04
2 41 0.85
3 5 0.10
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7192352 original size:30 final size:30
Alignment explanation
Indices: 7192259--7192356 Score: 79
Period size: 36 Copynumber: 3.0 Consensus size: 30
7192249 TTTATAATAT
* ** *
7192259 ATAAATTATGAAAAAAATATTTTAATTAAAAA
1 ATAAATTAT-AAATAAATATTAAAAAT-AAAA
*
7192291 ATAAATCTAATAAATTCATAATAATAGAAAATAAAA
1 ATAAAT-T-ATAAA-T-A-AATATTA-AAAATAAAA
7192327 ATAAATTATAAATAAATATTAAAAATAAAA
1 ATAAATTATAAATAAATATTAAAAATAAAA
7192357 TATATATAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
30 9 0.17
31 6 0.11
32 7 0.13
33 5 0.09
34 7 0.13
35 2 0.04
36 15 0.28
37 3 0.06
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (30 bp):
ATAAATTATAAATAAATATTAAAAATAAAA
Found at i:7196705 original size:19 final size:21
Alignment explanation
Indices: 7196681--7196723 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
7196671 TAAATTAAAA
7196681 ATAAAAATT-ATTTT-ATTTT
1 ATAAAAATTAATTTTAATTTT
*
7196700 ATAAAACTTAATTTTAATTTT
1 ATAAAAATTAATTTTAATTTT
7196721 ATA
1 ATA
7196724 TAATTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 5 0.24
21 8 0.38
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
ATAAAAATTAATTTTAATTTT
Found at i:7196825 original size:18 final size:18
Alignment explanation
Indices: 7196804--7196878 Score: 80
Period size: 18 Copynumber: 3.9 Consensus size: 18
7196794 GCAATATATT
7196804 TTAATTTATATATATAAA
1 TTAATTTATATATATAAA
7196822 TTAATTTATATATA-AATA
1 TTAATTTATATATATAA-A
*
7196840 TTCACATATATATATATAAA
1 TT-A-ATTTATATATATAAA
7196860 TAAATAATTTATATATATA
1 T---TAATTTATATATATA
7196879 TATGTGAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
17 2 0.04
18 17 0.35
19 1 0.02
20 12 0.25
21 14 0.29
22 1 0.02
23 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTTATATATATAAA
Found at i:7196966 original size:18 final size:19
Alignment explanation
Indices: 7196927--7196963 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
7196917 TAAATTTTAT
7196927 ATTTAATATATAATTTAAA
1 ATTTAATATATAATTTAAA
7196946 ATTTAA-ATA-AATTTAAA
1 ATTTAATATATAATTTAAA
7196963 A
1 A
7196964 ATTATATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTTAATATATAATTTAAA
Found at i:7197694 original size:10 final size:9
Alignment explanation
Indices: 7197673--7197716 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
7197663 AAAAAAATAT
7197673 ATATTAAAA
1 ATATTAAAA
7197682 ATATTATAAA
1 ATATTA-AAA
7197692 ATATTAAAA
1 ATATTAAAA
*
7197701 ATATCAAAA
1 ATATTAAAA
7197710 AT-TTAAA
1 ATATTAAA
7197717 TGTTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
8 4 0.12
9 19 0.59
10 9 0.28
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (9 bp):
ATATTAAAA
Found at i:7197697 original size:19 final size:18
Alignment explanation
Indices: 7197673--7197716 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
7197663 AAAAAAATAT
*
7197673 ATATTAAAAATATTATAAA
1 ATATTAAAAATATCA-AAA
7197692 ATATTAAAAATATCAAAA
1 ATATTAAAAATATCAAAA
7197710 AT-TTAAA
1 ATATTAAA
7197717 TGTTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 5 0.21
18 5 0.21
19 14 0.58
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATTAAAAATATCAAAA
Found at i:7197741 original size:24 final size:25
Alignment explanation
Indices: 7197679--7197743 Score: 62
Period size: 24 Copynumber: 2.6 Consensus size: 25
7197669 ATATATATTA
*
7197679 AAAATATTATAAAATATTAAAAATATC
1 AAAA-ATT-TAAAATATTAAAAAAATC
*
7197706 AAAAATTT-AAATGTTAAAAAAAT-
1 AAAAATTTAAAATATTAAAAAAATC
* *
7197729 ATAATTTTAAAATAT
1 AAAAATTTAAAATAT
7197744 CCCAAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 6 0.19
24 18 0.56
25 1 0.03
26 3 0.09
27 4 0.12
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
AAAAATTTAAAATATTAAAAAAATC
Found at i:7198818 original size:18 final size:17
Alignment explanation
Indices: 7198786--7198820 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7198776 AATGAATAAA
7198786 ATATTTTTATATTATAT
1 ATATTTTTATATTATAT
*
7198803 ATATTTTTGTATT-TAT
1 ATATTTTTATATTATAT
7198819 AT
1 AT
7198821 TTAATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
ATATTTTTATATTATAT
Found at i:7200141 original size:2 final size:2
Alignment explanation
Indices: 7200134--7200162 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7200124 CAATTATTTG
7200134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7200163 GTTCTCTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7229178 original size:3 final size:3
Alignment explanation
Indices: 7229165--7229196 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7229155 AGCTCAAAAG
*
7229165 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7229197 CCCAATATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7234364 original size:45 final size:46
Alignment explanation
Indices: 7234299--7234398 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 46
7234289 TTTGAATGAG
** * * * *
7234299 ATTTTTAAAGTTGTTAAATCTTTAATAAGAAAAACCTTTT-ATTTT
1 ATTTTTAAAGTCATTAAATCTCTAATAAAAAAAACATTTTAATTTA
* *
7234344 ATTTTTAAAGTCATTGAATCTCTAATAAAAAAAATATTTTAATTTA
1 ATTTTTAAAGTCATTAAATCTCTAATAAAAAAAACATTTTAATTTA
7234390 ATTTTTAAA
1 ATTTTTAAA
7234399 ATTATCAAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
45 33 0.72
46 13 0.28
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47
Consensus pattern (46 bp):
ATTTTTAAAGTCATTAAATCTCTAATAAAAAAAACATTTTAATTTA
Found at i:7234659 original size:9 final size:9
Alignment explanation
Indices: 7234647--7234697 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
7234637 GATTCAAGTA
7234647 TTTTATATT
1 TTTTATATT
7234656 TTTTATATT
1 TTTTATATT
*
7234665 TTTTGTTATT
1 TTTT-ATATT
7234675 ATTTTAATTATT
1 -TTTT-A-TATT
7234687 TTTTA-ATT
1 TTTTATATT
7234695 TTT
1 TTT
7234698 ATCTAACTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
8 6 0.17
9 13 0.36
10 5 0.14
11 8 0.22
12 4 0.11
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (9 bp):
TTTTATATT
Found at i:7234709 original size:31 final size:29
Alignment explanation
Indices: 7234645--7234709 Score: 69
Period size: 31 Copynumber: 2.2 Consensus size: 29
7234635 TTGATTCAAG
* * *
7234645 TATTTTATATTTTTTATATTTTTTGTTAT
1 TATTTTATATTTTTTATATTTTTTCTAAC
7234674 TATTTTAATTATTTTTTA-ATTTTTATCTAAC
1 TATTTT-A-TATTTTTTATATTTTT-TCTAAC
7234705 TATTT
1 TATTT
7234710 ACTTTCTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 6 0.20
30 7 0.23
31 17 0.57
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.71
Consensus pattern (29 bp):
TATTTTATATTTTTTATATTTTTTCTAAC
Found at i:7237188 original size:294 final size:293
Alignment explanation
Indices: 7236652--7237234 Score: 1085
Period size: 294 Copynumber: 2.0 Consensus size: 293
7236642 CTTCTCTACT
*
7236652 TCTATTTAATGCCAATTAGATTCTATGACTTTGAATTATATATGTAAAAGCACTCATAATTTTTC
1 TCTATTTAATGCCAATGAGATTCTATGACTTTGAATTATATATGTAAAAGCACTCATAATTTTTC
7236717 TCCTTATTTTATCTCCTTGATGGAAAAACAGAAACTGCTTAACCCTTCACATGAACTTTGCAAGT
66 TCCTTATTTTATCTCCTTGATGGAAAAACAGAAACTGCTTAACCCTTCACATGAACTTTGCAAGT
7236782 TTGAAATCCACATCTCCAGCATTTGTTGCATCTCTTTTCAACACTGTTCCCTCCTGGACTTCTGT
131 TTGAAATCCACATCTCCAGCATTTGTTGCATCTCTTTTCAACACTGTTCCCTCCTGGACTTCTGT
*
7236847 ACCAGCCATCATGCTCAGGTGGCGACTCAGACTCTATATACGCACTATGTCTTTTCTTTAAAAAT
196 ACCAGCCATCATACTCAGGTGGCGACTCAGACTCTATATACGCACTATGTCTTTTCTTTAAAAAT
*
7236912 CTTATGAAGAGTTAAAAGAGATTTCATAACTTC
261 CTTATGAAGAGTCAAAAGAGATTTCATAACTTC
7236945 TCTACTTTAATGCCAATGAGATTCTATGACTTTGAATTATATATGTAAAAGCACTCATAATTTTT
1 TCTA-TTTAATGCCAATGAGATTCTATGACTTTGAATTATATATGTAAAAGCACTCATAATTTTT
7237010 CTCCTTATTTTATCTCCTTGATGGAAAAACAGAAACTGCTTAACCCTTCACATGAACTTTGCAAG
65 CTCCTTATTTTATCTCCTTGATGGAAAAACAGAAACTGCTTAACCCTTCACATGAACTTTGCAAG
*
7237075 TTTGAAATCCACTTCTCCAGCATTTGTTGCATCTCTTTTCAACACTGTTCCCTCCTGGACTTCTG
130 TTTGAAATCCACATCTCCAGCATTTGTTGCATCTCTTTTCAACACTGTTCCCTCCTGGACTTCTG
* ** *
7237140 TACCAGTCATCATACTCAGGTGTTGACTCAGACTCTATATATGCACTATGTCTTTTCTTTAAAAA
195 TACCAGCCATCATACTCAGGTGGCGACTCAGACTCTATATACGCACTATGTCTTTTCTTTAAAAA
7237205 TCTTATGAAGAGTCAAAAGAGATTTCATAA
260 TCTTATGAAGAGTCAAAAGAGATTTCATAA
7237235 ACAATCTTCT
Statistics
Matches: 281, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
293 4 0.01
294 277 0.99
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.37
Consensus pattern (293 bp):
TCTATTTAATGCCAATGAGATTCTATGACTTTGAATTATATATGTAAAAGCACTCATAATTTTTC
TCCTTATTTTATCTCCTTGATGGAAAAACAGAAACTGCTTAACCCTTCACATGAACTTTGCAAGT
TTGAAATCCACATCTCCAGCATTTGTTGCATCTCTTTTCAACACTGTTCCCTCCTGGACTTCTGT
ACCAGCCATCATACTCAGGTGGCGACTCAGACTCTATATACGCACTATGTCTTTTCTTTAAAAAT
CTTATGAAGAGTCAAAAGAGATTTCATAACTTC
Found at i:7251079 original size:12 final size:12
Alignment explanation
Indices: 7251047--7251073 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7251037 TCTAAAACCC
7251047 AAAACAAAAAAA
1 AAAACAAAAAAA
7251059 AAAACAAAAAAA
1 AAAACAAAAAAA
7251071 AAA
1 AAA
7251074 GGAAAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAA
Found at i:7256816 original size:24 final size:24
Alignment explanation
Indices: 7256784--7256834 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
7256774 TAAGGCTTAG
7256784 TTTTCTGTTGTTGTTGTTGTATAC
1 TTTTCTGTTGTTGTTGTTGTATAC
7256808 TTTTCTGTTGTTGTTGTTGTATAC
1 TTTTCTGTTGTTGTTGTTGTATAC
7256832 TTT
1 TTT
7256835 CATCTTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.65
Consensus pattern (24 bp):
TTTTCTGTTGTTGTTGTTGTATAC
Found at i:7258135 original size:6 final size:7
Alignment explanation
Indices: 7258117--7258141 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7258107 TGGTTTCTCA
7258117 ATTTTTT
1 ATTTTTT
7258124 ATTTTTT
1 ATTTTTT
7258131 ATTTTTT
1 ATTTTTT
7258138 ATTT
1 ATTT
7258142 AATCCCTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
ATTTTTT
Found at i:7258819 original size:33 final size:32
Alignment explanation
Indices: 7258767--7258829 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
7258757 ACTCAAATTG
*
7258767 TATGAATTTAATAATTCATAAACTTGATTATT
1 TATGAATTTAATAATTCATAAACTTAATTATT
7258799 TATGAATATGTAAT-ATTCATAAACTTAATTA
1 TATGAAT-T-TAATAATTCATAAACTTAATTA
7258830 ATTGTAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 7 0.25
33 17 0.61
34 4 0.14
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (32 bp):
TATGAATTTAATAATTCATAAACTTAATTATT
Found at i:7266587 original size:17 final size:17
Alignment explanation
Indices: 7266565--7266599 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7266555 GACAGACAAT
7266565 TGCAGAAGAAGTGACAG
1 TGCAGAAGAAGTGACAG
7266582 TGCAGAAGAAGTGACAG
1 TGCAGAAGAAGTGACAG
7266599 T
1 T
7266600 AGCAACCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.34, T:0.14
Consensus pattern (17 bp):
TGCAGAAGAAGTGACAG
Found at i:7277082 original size:3 final size:3
Alignment explanation
Indices: 7277074--7277098 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7277064 TCAATGGCAG
7277074 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
7277099 ATTCGTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:7287082 original size:12 final size:13
Alignment explanation
Indices: 7287061--7287089 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7287051 CGTTAATTTC
7287061 AAATATAATAAAT
1 AAATATAATAAAT
7287074 AAATA-AATAAAT
1 AAATATAATAAAT
7287086 AAAT
1 AAAT
7287090 GATTGTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATATAATAAAT
Found at i:7291313 original size:8 final size:8
Alignment explanation
Indices: 7291302--7291330 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7291292 TATCTTATAT
7291302 TTTTAATA
1 TTTTAATA
7291310 TTTTAATA
1 TTTTAATA
7291318 TTTTAATA
1 TTTTAATA
7291326 TTTTA
1 TTTTA
7291331 TGTATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TTTTAATA
Found at i:7292267 original size:23 final size:23
Alignment explanation
Indices: 7292241--7292306 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 23
7292231 AATTATTTAT
*
7292241 ATAATTTTATATTAATATTAAAA
1 ATAATTTTATATTAATTTTAAAA
7292264 ATAA---TATATTATATTTTAAAA
1 ATAATTTTATATTA-ATTTTAAAA
7292285 ATAATATTT-TATTAATTTTAAA
1 ATAAT-TTTATATTAATTTTAAA
7292307 TCAAATCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
20 7 0.19
21 12 0.32
23 12 0.32
24 5 0.14
25 1 0.03
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
ATAATTTTATATTAATTTTAAAA
Found at i:7292325 original size:22 final size:23
Alignment explanation
Indices: 7292297--7292349 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
7292287 AATATTTTAT
7292297 TAATTTTAAATCAA-ATCAAAT-A
1 TAATTTTAAAT-AATATCAAATCA
*
7292319 TAATTTTATATAATATCAAATCA
1 TAATTTTAAATAATATCAAATCA
7292342 -AATTTTAA
1 TAATTTTAA
7292350 TAAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 24 0.89
23 1 0.04
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.42
Consensus pattern (23 bp):
TAATTTTAAATAATATCAAATCA
Found at i:7292389 original size:21 final size:21
Alignment explanation
Indices: 7292371--7292410 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7292361 AAAAAAATCA
*
7292371 TATTAA-ATCAAATTCAAATAT
1 TATTAATATAAAATT-AAATAT
7292392 TATTAATATAAAATTAAAT
1 TATTAATATAAAATTAAAT
7292411 TAAATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
TATTAATATAAAATTAAATAT
Found at i:7293190 original size:16 final size:17
Alignment explanation
Indices: 7293169--7293208 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
7293159 TTTTTTTCTT
*
7293169 TTTTAT-TATTAACAAA
1 TTTTATATATTAAAAAA
7293185 TTTTATATATTAAAAAA
1 TTTTATATATTAAAAAA
7293202 TTATTAT
1 TT-TTAT
7293209 CATAAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 11 0.52
18 4 0.19
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTTATATATTAAAAAA
Found at i:7295061 original size:30 final size:29
Alignment explanation
Indices: 7295027--7295094 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
7295017 TTTTACACTC
**
7295027 AAATAAACTCTTAAAATTTAATTTATATCT
1 AAATAAA-TCTTAAAATTTAATTTATATAG
* **
7295057 AAATAAGATTTTAACTTTTAATTTATATAG
1 AAATAA-ATCTTAAAATTTAATTTATATAG
7295087 AAATAAAT
1 AAATAAAT
7295095 TTTTAATTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 2 0.06
30 29 0.91
31 1 0.03
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (29 bp):
AAATAAATCTTAAAATTTAATTTATATAG
Found at i:7295130 original size:22 final size:22
Alignment explanation
Indices: 7295073--7295132 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
7295063 GATTTTAACT
* *
7295073 TTTAATTTATATAGAAATAAATT
1 TTTAATTTATAT-TAAATAAATC
*
7295096 TTTAATTTGTATTAAATAAATC
1 TTTAATTTATATTAAATAAATC
*
7295118 TTTAATATATATTAA
1 TTTAATTTATATTAA
7295133 TATTTTGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 21 0.66
23 11 0.34
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (22 bp):
TTTAATTTATATTAAATAAATC
Found at i:7299451 original size:9 final size:9
Alignment explanation
Indices: 7299437--7299461 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7299427 ATTAGAAAGT
7299437 TTATTTTTA
1 TTATTTTTA
7299446 TTATTTTTA
1 TTATTTTTA
7299455 TTATTTT
1 TTATTTT
7299462 AGTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTATTTTTA
Found at i:7300574 original size:14 final size:13
Alignment explanation
Indices: 7300557--7300599 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
7300547 AAGCTGCTAG
7300557 AAGAAAGAAAAGAA
1 AAGAAAGAAAA-AA
*
7300571 AAGAAAAAGAAAAA
1 AAGAAAGA-AAAAA
7300585 AAGAAAGAAAAAA
1 AAGAAAGAAAAAA
7300598 AA
1 AA
7300600 TTAATTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 7 0.27
14 16 0.62
15 3 0.12
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAAA
Found at i:7303155 original size:91 final size:92
Alignment explanation
Indices: 7303053--7303234 Score: 312
Period size: 91 Copynumber: 2.0 Consensus size: 92
7303043 GTTATACCCC
* *
7303053 ATTATAGCCTTCAAATTGATTGAAAAAATTTATTGCCAGCTAGCGAATTCTTCAAATTAATAT-A
1 ATTATAGCCTTCAAATTGATTAAAAAAAATTATTGCCAGCTAGCGAATTCTTCAAATTAATATAA
*
7303117 TACATACATGTATATATATATATATAT
66 TACATACATATATATATATATATATAT
7303144 ATTATAGCCTTCAAATTGATTAAAAAAAATTATTGCCAGCTAGCGAATTCTTCAAATTAATATAC
1 ATTATAGCCTTCAAATTGATTAAAAAAAATTATTGCCAGCTAGCGAATTCTTCAAATTAATATA-
*
7303209 ATACATACATATATATGTATATATAT
65 ATACATACATATATATATATATATAT
7303235 CAATAATTTG
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
91 61 0.72
93 24 0.28
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (92 bp):
ATTATAGCCTTCAAATTGATTAAAAAAAATTATTGCCAGCTAGCGAATTCTTCAAATTAATATAA
TACATACATATATATATATATATATAT
Found at i:7311360 original size:20 final size:22
Alignment explanation
Indices: 7311335--7311392 Score: 77
Period size: 20 Copynumber: 2.8 Consensus size: 22
7311325 TCTATGATTA
7311335 ATATTTAT-TTTAATTTT-TTT
1 ATATTTATATTTAATTTTATTT
*
7311355 ATATTT-TAATTAATTTTATTT
1 ATATTTATATTTAATTTTATTT
*
7311376 ATTTTTATATTTAATTT
1 ATATTTATATTTAATTT
7311393 AAAATCATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 1 0.03
20 14 0.44
21 8 0.25
22 9 0.28
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
ATATTTATATTTAATTTTATTT
Found at i:7311380 original size:26 final size:26
Alignment explanation
Indices: 7311341--7311391 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7311331 ATTAATATTT
7311341 ATTTTAA-TTTTTTTATATTTTAATTA
1 ATTTTAATTTTTTTTATA-TTTAATTA
7311367 ATTTT-ATTTATTTTTATATTTAATT
1 ATTTTAATTT-TTTTTATATTTAATT
7311392 TAAAATCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.04
26 14 0.61
27 8 0.35
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (26 bp):
ATTTTAATTTTTTTTATATTTAATTA
Found at i:7311393 original size:21 final size:22
Alignment explanation
Indices: 7311338--7311393 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
7311328 ATGATTAATA
*
7311338 TTTAT-TTTAATTTTTTTATAT
1 TTTATATTTAATTTATTTATAT
7311359 TTTA-A-TTAATTTTATTTAT-T
1 TTTATATTTAA-TTTATTTATAT
7311379 TTTATATTTAATTTA
1 TTTATATTTAATTTA
7311394 AAATCATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
20 9 0.30
21 17 0.57
22 4 0.13
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTATATTTAATTTATTTATAT
Found at i:7315872 original size:7 final size:7
Alignment explanation
Indices: 7315860--7315885 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7315850 GTAAAATAGT
7315860 TGTTTTG
1 TGTTTTG
7315867 TGTTTTG
1 TGTTTTG
7315874 TGTTTTG
1 TGTTTTG
7315881 TGTTT
1 TGTTT
7315886 ACTGCAGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.27, T:0.73
Consensus pattern (7 bp):
TGTTTTG
Found at i:7320058 original size:75 final size:75
Alignment explanation
Indices: 7319935--7320084 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
7319925 CCGTGACAAG
7319935 TAGGTTGATTTGGGACATCGGATGAGTGGATGCTTGGATCCTAGAGTTGCGCAGGTCTGAAACTT
1 TAGGTTGATTTGGGACATCGGATGAGTGGATGCTTGGATCCTAGAGTTGCGCAGGTCTGAAACTT
7320000 GAGTCTCGGC
66 GAGTCTCGGC
*
7320010 TAGGTTGATTTGGGACATCGGATGAGTGGATGCTTGGATCCTAGAGTTGCGCAGGTTTGAAACTT
1 TAGGTTGATTTGGGACATCGGATGAGTGGATGCTTGGATCCTAGAGTTGCGCAGGTCTGAAACTT
7320075 GAGTCTCGGC
66 GAGTCTCGGC
7320085 CCATGACATT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.20, C:0.15, G:0.35, T:0.30
Consensus pattern (75 bp):
TAGGTTGATTTGGGACATCGGATGAGTGGATGCTTGGATCCTAGAGTTGCGCAGGTCTGAAACTT
GAGTCTCGGC
Found at i:7320618 original size:23 final size:22
Alignment explanation
Indices: 7320592--7320635 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7320582 TAAATTTTTT
7320592 AATATTTCAATAATTTAATAATG
1 AATATTTCAAT-ATTTAATAATG
*
7320615 AATATTTTAATATTTAATAAT
1 AATATTTCAATATTTAATAAT
7320636 TATGCCAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
AATATTTCAATATTTAATAATG
Found at i:7320633 original size:15 final size:15
Alignment explanation
Indices: 7320588--7320633 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
7320578 ATTTTAAATT
7320588 TTTTAATATTTCAATA
1 TTTTAATATTT-AATA
* * *
7320604 ATTTAATAATGAATA
1 TTTTAATATTTAATA
7320619 TTTTAATATTTAATA
1 TTTTAATATTTAATA
7320634 ATTATGCCAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
TTTTAATATTTAATA
Done.