Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 23 of 113
Found at i:7968064 original size:3 final size:3
Alignment explanation
Indices: 7968058--7968093 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7968048 TTCACCTTCT
7968058 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
7968094 TCATCATCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:7969264 original size:16 final size:18
Alignment explanation
Indices: 7969243--7969278 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7969233 TTATATTTTC
7969243 TTAAATT-TT-ATATAAT
1 TTAAATTATTGATATAAT
7969259 TTAAATTATTGATATAAT
1 TTAAATTATTGATATAAT
7969277 TT
1 TT
7969279 TTAAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
TTAAATTATTGATATAAT
Found at i:7976857 original size:6 final size:7
Alignment explanation
Indices: 7976836--7976860 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7976826 ATAATAAGTA
7976836 TTTATTT
1 TTTATTT
7976843 TTTATTT
1 TTTATTT
7976850 TTTATTT
1 TTTATTT
7976857 TTTA
1 TTTA
7976861 ATTATGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Found at i:7989378 original size:2 final size:2
Alignment explanation
Indices: 7989371--7989405 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7989361 AGCTACAGAT
7989371 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7989406 CATATCTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7995765 original size:28 final size:28
Alignment explanation
Indices: 7995734--7995788 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
7995724 ATTTTAAAAT
* * *
7995734 TTAAAATATTATAATAAAATTATACCAA
1 TTAAAAAATAATAATAAAATTAAACCAA
*
7995762 TTAAAAAATAATAATAAATTTAAACCA
1 TTAAAAAATAATAATAAAATTAAACCA
7995789 TTCAGGTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (28 bp):
TTAAAAAATAATAATAAAATTAAACCAA
Found at i:7996993 original size:21 final size:23
Alignment explanation
Indices: 7996953--7996998 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
7996943 GTTTGATTAA
* *
7996953 AAATTATCTAATCGATAAAA-AT
1 AAATTATCTAATCAACAAAACAT
7996975 AAATTAT-TAATCAACAAAACAT
1 AAATTATCTAATCAACAAAACAT
7996997 AA
1 AA
7996999 GATCAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.28
Consensus pattern (23 bp):
AAATTATCTAATCAACAAAACAT
Found at i:7997846 original size:23 final size:23
Alignment explanation
Indices: 7997820--7997863 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
7997810 TTTATAAAAC
*
7997820 ATATAT-ATTTTTATTA-AATTT
1 ATATATAATTATTATTATAATTT
7997841 ATATATAATTATTATTATAATTT
1 ATATATAATTATTATTATAATTT
7997864 TAAACTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 9 0.45
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
ATATATAATTATTATTATAATTT
Found at i:8014524 original size:21 final size:21
Alignment explanation
Indices: 8014498--8014571 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
8014488 CGGGATAGAT
*
8014498 TTTTTGCAAATAGATTGATCC
1 TTTTTGCAAATAGATTAATCC
*
8014519 TTTTTGCAAATGGATTAATCC
1 TTTTTGCAAATAGATTAATCC
* * *
8014540 TTTTTGAAAATGGATCAAT-C
1 TTTTTGCAAATAGATTAATCC
8014560 TATTTTGCAAAT
1 T-TTTTGCAAAT
8014572 TGCACCTCTG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 2 0.04
21 45 0.96
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (21 bp):
TTTTTGCAAATAGATTAATCC
Found at i:8018524 original size:24 final size:24
Alignment explanation
Indices: 8018492--8018540 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8018482 TCTCGGGGTA
8018492 AGTTCTTTTTTCTTTTGAAAATCG
1 AGTTCTTTTTTCTTTTGAAAATCG
8018516 AGTTCTTTTTTCTTTTGAAAATCG
1 AGTTCTTTTTTCTTTTGAAAATCG
8018540 A
1 A
8018541 ATATCAGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.53
Consensus pattern (24 bp):
AGTTCTTTTTTCTTTTGAAAATCG
Found at i:8018687 original size:16 final size:16
Alignment explanation
Indices: 8018668--8018704 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8018658 TATTTAATTT
*
8018668 TATATATTTTTATATA
1 TATATAATTTTATATA
*
8018684 TATATAATTTTATATT
1 TATATAATTTTATATA
8018700 TATAT
1 TATAT
8018705 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATAATTTTATATA
Found at i:8022123 original size:16 final size:17
Alignment explanation
Indices: 8022096--8022143 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
8022086 ATCATAGATT
8022096 AATGCACCTAATTAAA-A
1 AATGC-CCTAATTAAAGA
* *
8022113 AATGGCCTAATAAAAGA
1 AATGCCCTAATTAAAGA
8022130 AATGCCCTTAATTA
1 AATGCCC-TAATTA
8022144 TGAATTGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 9 0.36
17 11 0.44
18 5 0.20
ACGTcount: A:0.48, C:0.17, G:0.10, T:0.25
Consensus pattern (17 bp):
AATGCCCTAATTAAAGA
Found at i:8025227 original size:2 final size:2
Alignment explanation
Indices: 8025218--8025248 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8025208 AAATATATGA
8025218 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8025249 GCTGGTATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:8026940 original size:26 final size:26
Alignment explanation
Indices: 8026911--8026962 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8026901 TTTCGAGGAA
*
8026911 ATTTTTACAAATTGCTTT-TGTTATTT
1 ATTTATACAAA-TGCTTTATGTTATTT
*
8026937 ATTTATATAAATGCTTTATGTTATTT
1 ATTTATACAAATGCTTTATGTTATTT
8026963 GCTTTTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.60
Consensus pattern (26 bp):
ATTTATACAAATGCTTTATGTTATTT
Found at i:8027178 original size:13 final size:13
Alignment explanation
Indices: 8027160--8027194 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8027150 TTTGAGAAAA
*
8027160 TATTTTTTGTTTT
1 TATTTTTTATTTT
8027173 TATTTTTTATTTT
1 TATTTTTTATTTT
*
8027186 CATTTTTTA
1 TATTTTTTA
8027195 GAGAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.80
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:8027226 original size:21 final size:21
Alignment explanation
Indices: 8027179--8027226 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
8027169 TTTTTATTTT
*
8027179 TTATTTTCATTTTTTAGAGAA
1 TTATTTTCATTTTTTAGAAAA
* *
8027200 TAATTTTTATTTTTTA-AAAA
1 TTATTTTCATTTTTTAGAAAA
8027220 TGTATTT
1 T-TATTT
8027227 GATAAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (21 bp):
TTATTTTCATTTTTTAGAAAA
Found at i:8028014 original size:3 final size:3
Alignment explanation
Indices: 8028008--8028041 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
8027998 CAACAACAAC
8028008 AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8028042 AACGAAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8028031 original size:14 final size:14
Alignment explanation
Indices: 8028012--8028040 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8028002 AACAACAATA
8028012 ATAATAATAATAAT
1 ATAATAATAATAAT
8028026 ATAATAATAATAAT
1 ATAATAATAATAAT
8028040 A
1 A
8028041 AAACGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:8028031 original size:17 final size:17
Alignment explanation
Indices: 8028009--8028041 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8027999 AACAACAACA
8028009 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
8028026 ATAATAATAATAATAA
1 ATAATAATAATAATAA
8028042 AACGAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAATAATAATAATAAT
Found at i:8028711 original size:2 final size:2
Alignment explanation
Indices: 8028706--8028732 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8028696 CTCTAATAGT
8028706 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
8028733 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8028737 original size:2 final size:2
Alignment explanation
Indices: 8028732--8028758 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8028722 TCTCTCTCTC
8028732 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8028759 TTCAGCAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8030488 original size:21 final size:20
Alignment explanation
Indices: 8030447--8030492 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
8030437 TAAAATTAAC
8030447 AAAATATTTATTTTTAATAT
1 AAAATATTTATTTTTAATAT
*
8030467 AAAATA-TTATTTTTAAAAT
1 AAAATATTTATTTTTAATAT
8030486 ATAAATA
1 A-AAATA
8030493 AATAATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AAAATATTTATTTTTAATAT
Found at i:8030767 original size:62 final size:62
Alignment explanation
Indices: 8030700--8030868 Score: 157
Period size: 62 Copynumber: 2.7 Consensus size: 62
8030690 AATTGTAAAA
* *
8030700 GATTATTAAAAGCGTTTTTAGTAAAAAAATGCCTTCAATAA-C-CCTTTCATTTTTTATGAAG
1 GATTATTAAAAGCGTTTTTAGTAAAAAAATGCCTTCAATAATCTCCTCTAATTTTTTATG-AG
* * ** * *
8030761 GAATTATTAAAGGTGTTTTTTACAAAAAAAATACCTTTAATAATCTCCTCTAATTTTTTATGAG
1 G-ATTATTAAAAGCG-TTTTTAGTAAAAAAATGCCTTCAATAATCTCCTCTAATTTTTTATGAG
* * * *
8030825 GATTATT-GAAGACG-TTTTAGGTAATAAAACGCCTTGAATAATCT
1 GATTATTAAAAG-CGTTTTTA-GTAAAAAAATGCCTTCAATAATCT
8030869 ACTCATAAAA
Statistics
Matches: 85, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
61 6 0.07
62 31 0.36
63 30 0.35
64 4 0.05
65 14 0.16
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (62 bp):
GATTATTAAAAGCGTTTTTAGTAAAAAAATGCCTTCAATAATCTCCTCTAATTTTTTATGAG
Found at i:8030830 original size:63 final size:61
Alignment explanation
Indices: 8030700--8030831 Score: 149
Period size: 63 Copynumber: 2.1 Consensus size: 61
8030690 AATTGTAAAA
** * * *
8030700 GATTATTAAAAGCGTTTTTAGTAAAAAAATGCCTTCAATAACCCTTTCATTTTTTATGAAG
1 GATTATTAAAAGCGTTTTTACAAAAAAAATACCTTCAATAACCCTCTAATTTTTTATGAAG
* * *
8030761 GAATTATTAAAGGTGTTTTTTACAAAAAAAATACCTTTAATAATCTCCTCTAATTTTTTATG-AG
1 G-ATTATTAAAAGCG-TTTTTACAAAAAAAATACCTTCAATAA-C-CCTCTAATTTTTTATGAAG
8030825 GATTATT
1 GATTATT
8030832 GAAGACGTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
61 1 0.02
62 11 0.19
63 29 0.49
64 4 0.07
65 14 0.24
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (61 bp):
GATTATTAAAAGCGTTTTTACAAAAAAAATACCTTCAATAACCCTCTAATTTTTTATGAAG
Found at i:8031823 original size:64 final size:64
Alignment explanation
Indices: 8031665--8031824 Score: 182
Period size: 65 Copynumber: 2.5 Consensus size: 64
8031655 TTTTCTTATC
* * **
8031665 AAAATTTAAAAGGATTATTAAATGCG-CTTTTTTTGCA-A-AAAATACCTTCAATAATCATCTCT
1 AAAATTTAAGAGGATTATTAAA-G-GTATTTTTTTTTATAGAAAATACCTTCAATAATCATCTCT
8031727 A
64 A
* * * * *
8031728 AAAATTTAAGGGGATTATTGAGGGTATTTTTTTTTATAGAAAATACCTTTAATAGTCATCTCTAA
1 AAAATTTAAGAGGATTATTAAAGGTATTTTTTTTTATAGAAAATACCTTCAATAATCATCTCT-A
*
8031793 AAAATTTAAGAGGATTATTAAAGTTATTTTTT
1 AAAATTTAAGAGGATTATTAAAGGTATTTTTT
8031825 GCTTGAAACG
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
61 1 0.01
62 9 0.11
63 19 0.24
64 22 0.28
65 29 0.36
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.41
Consensus pattern (64 bp):
AAAATTTAAGAGGATTATTAAAGGTATTTTTTTTTATAGAAAATACCTTCAATAATCATCTCTA
Found at i:8047278 original size:21 final size:21
Alignment explanation
Indices: 8047252--8047302 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
8047242 CCCGAAATTA
*
8047252 ATAAAATATTATTTTTTTAAT
1 ATAAAATATTATTTTTTAAAT
8047273 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
8047294 AT-AAATATT
1 ATAAAATATT
8047303 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 7 0.24
21 22 0.76
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:8047289 original size:20 final size:20
Alignment explanation
Indices: 8047251--8047302 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 20
8047241 ACCCGAAATT
8047251 AATAAAATATTATTTTTTTA
1 AATAAAATATTATTTTTTTA
8047271 ATATAAAATATTA-TTTTTTA
1 A-ATAAAATATTATTTTTTTA
8047291 AATATAAATATT
1 AATA-AAATATT
8047303 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.10
20 16 0.53
21 11 0.37
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
AATAAAATATTATTTTTTTA
Found at i:8047338 original size:30 final size:30
Alignment explanation
Indices: 8047269--8047339 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 30
8047259 ATTATTTTTT
* * * *
8047269 TAATATAAAATATTATTTTTTAAATATAAA
1 TAATAAAAAATATCATTATATAAATATAAA
* * *
8047299 TATTTAAAAATATCATTATATAAATATATA
1 TAATAAAAAATATCATTATATAAATATAAA
8047329 TAATAAAAAAT
1 TAATAAAAAAT
8047340 TAAAAAATAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (30 bp):
TAATAAAAAATATCATTATATAAATATAAA
Found at i:8047935 original size:21 final size:21
Alignment explanation
Indices: 8047905--8047955 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
8047895 GATATTTTTA
*
8047905 AATA-TTTATATTTAAAAAAT
1 AATATTTTATATTAAAAAAAT
8047925 AATATTTTATATTAAAAAAAT
1 AATATTTTATATTAAAAAAAT
8047946 AATATTTTAT
1 AATATTTTAT
8047956 TAATTTCGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AATATTTTATATTAAAAAAAT
Found at i:8048930 original size:19 final size:20
Alignment explanation
Indices: 8048904--8048949 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
8048894 AATGAATTTT
*
8048904 AAATTTTTTATTTTTTATTA
1 AAATTTTTAATTTTTTATTA
8048924 AAATTTTTAGATTTTTTA--A
1 AAATTTTTA-ATTTTTTATTA
8048943 AAATTTT
1 AAATTTT
8048950 AAGTATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 8 0.33
20 8 0.33
21 8 0.33
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
AAATTTTTAATTTTTTATTA
Found at i:8049034 original size:34 final size:33
Alignment explanation
Indices: 8048959--8049052 Score: 91
Period size: 32 Copynumber: 2.8 Consensus size: 33
8048949 TAAGTATTCA
* *
8048959 TAATTTTTATATTTTTATATTTTCTAAAAATATG
1 TAATTTTT-TATTTTTATATTTTTTTAAAATATG
** *
8048993 CCA-TTTTTATTTTTATATTTTTTTAAAATAATT
1 TAATTTTTTATTTTTATATTTTTTTAAAAT-ATG
*
8049026 TAATTTTTTAATTTTTTTAATTTTTTT
1 TAATTTTTT-ATTTTTAT-ATTTTTTT
8049053 TAATATTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
32 20 0.42
33 7 0.15
34 6 0.12
35 7 0.15
36 8 0.17
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (33 bp):
TAATTTTTTATTTTTATATTTTTTTAAAATATG
Found at i:8049043 original size:9 final size:9
Alignment explanation
Indices: 8049024--8049052 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8049014 TTTAAAATAA
8049024 TTTAA-TTT
1 TTTAATTTT
8049032 TTTAATTTT
1 TTTAATTTT
8049041 TTTAATTTT
1 TTTAATTTT
8049050 TTT
1 TTT
8049053 TAATATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTAATTTT
Found at i:8052862 original size:13 final size:13
Alignment explanation
Indices: 8052844--8052869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8052834 ATATATCTCC
8052844 ATTCAAATTGTAT
1 ATTCAAATTGTAT
8052857 ATTCAAATTGTAT
1 ATTCAAATTGTAT
8052870 CTCATGTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTCAAATTGTAT
Found at i:8064525 original size:3 final size:3
Alignment explanation
Indices: 8064517--8064541 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8064507 AATTTCAAGG
8064517 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
8064542 TGTTGCAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:8072568 original size:13 final size:13
Alignment explanation
Indices: 8072547--8072577 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8072537 TGAGCTGATA
*
8072547 GCAGCCATGAAAT
1 GCAGACATGAAAT
8072560 GCAGACATGAAAT
1 GCAGACATGAAAT
8072573 GCAGA
1 GCAGA
8072578 TTCTTTGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.13
Consensus pattern (13 bp):
GCAGACATGAAAT
Found at i:8080064 original size:2 final size:2
Alignment explanation
Indices: 8080057--8080084 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8080047 CAGCACCCTG
8080057 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8080085 TTGCTACATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8082180 original size:61 final size:62
Alignment explanation
Indices: 8082109--8082238 Score: 217
Period size: 62 Copynumber: 2.1 Consensus size: 62
8082099 GTATAGTTAA
*
8082109 TTAAGCTAAAACTTCAATATATAGGAA-CCACTGTCTGAAATTTGCAATTTTCATTAAAAAC
1 TTAAGCTAAAACTTCAATAAATAGGAAGCCACTGTCTGAAATTTGCAATTTTCATTAAAAAC
* **
8082170 TTAAGTTAAAACTTCAATAAATAGGAAGCCGTTGTCTGAAATTTGCAATTTTCATTAAAAAC
1 TTAAGCTAAAACTTCAATAAATAGGAAGCCACTGTCTGAAATTTGCAATTTTCATTAAAAAC
8082232 TTAAGCT
1 TTAAGCT
8082239 GGTCTCTATT
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
61 25 0.40
62 38 0.60
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (62 bp):
TTAAGCTAAAACTTCAATAAATAGGAAGCCACTGTCTGAAATTTGCAATTTTCATTAAAAAC
Found at i:8084825 original size:52 final size:53
Alignment explanation
Indices: 8084764--8084873 Score: 186
Period size: 52 Copynumber: 2.1 Consensus size: 53
8084754 GGAGCTGCAG
8084764 TTAATGTTGAATTGAATGATGAAGAAATCAAAATGCGTACTAT-TTTTCTCAT
1 TTAATGTTGAATTGAATGATGAAGAAATCAAAATGCGTACTATGTTTTCTCAT
* * *
8084816 TTAATGTTGAATTGAATGGTGAAGAAATCAAAATGTGTACTTTGTTTTCTCAT
1 TTAATGTTGAATTGAATGATGAAGAAATCAAAATGCGTACTATGTTTTCTCAT
8084869 TTAAT
1 TTAAT
8084874 CTGTTACTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
52 40 0.74
53 14 0.26
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (53 bp):
TTAATGTTGAATTGAATGATGAAGAAATCAAAATGCGTACTATGTTTTCTCAT
Found at i:8091444 original size:18 final size:18
Alignment explanation
Indices: 8091421--8091466 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
8091411 AAATTAGCAA
8091421 TAATTTGGATGGTTGCTT
1 TAATTTGGATGGTTGCTT
8091439 TAATTTGGATGGTTGCTT
1 TAATTTGGATGGTTGCTT
*
8091457 TAATCTGGAT
1 TAATTTGGAT
8091467 TTGTCGGGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.20, C:0.07, G:0.26, T:0.48
Consensus pattern (18 bp):
TAATTTGGATGGTTGCTT
Found at i:8103953 original size:24 final size:24
Alignment explanation
Indices: 8103926--8103976 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
8103916 TGGAAGAACC
8103926 ATTCAGTAATTATTCATTGGATTA
1 ATTCAGTAATTATTCATTGGATTA
8103950 ATTCAGTAATTATTCATTGGATTA
1 ATTCAGTAATTATTCATTGGATTA
8103974 ATT
1 ATT
8103977 TTCTTTCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (24 bp):
ATTCAGTAATTATTCATTGGATTA
Found at i:8119028 original size:25 final size:25
Alignment explanation
Indices: 8118991--8119048 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
8118981 AATTAATAAT
*
8118991 AAAAATTACTGTAATTATAATTAAA
1 AAAAATTACTGTAATTACAATTAAA
* *
8119016 AAAAATTATTGTAATTACAATTGAA
1 AAAAATTACTGTAATTACAATTAAA
*
8119041 ACAAATTA
1 AAAAATTA
8119049 ATAAAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (25 bp):
AAAAATTACTGTAATTACAATTAAA
Found at i:8120205 original size:23 final size:24
Alignment explanation
Indices: 8120161--8120210 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 24
8120151 TTTTTTTCAA
8120161 TAAAATATATTAATTCTAATTAATT
1 TAAAATATATTAATTCTAATT-ATT
8120186 TAAAATA-A-TAATT-TATATTATT
1 TAAAATATATTAATTCTA-ATTATT
8120208 TAA
1 TAA
8120211 TAAAAAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.33
23 8 0.33
24 1 0.04
25 7 0.29
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAAATATATTAATTCTAATTATT
Found at i:8125875 original size:2 final size:2
Alignment explanation
Indices: 8125868--8125906 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8125858 CGAGAATGGT
*
8125868 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8125907 TTTCTTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:8129910 original size:2 final size:2
Alignment explanation
Indices: 8129871--8129902 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8129861 TTATTCCTTC
8129871 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8129903 TGATATATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8131022 original size:18 final size:19
Alignment explanation
Indices: 8130995--8131030 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8130985 AATTATTATT
*
8130995 TAATATTTTAAT-TAAATA
1 TAATAATTTAATATAAATA
8131013 TAATAATTTAATATAAAT
1 TAATAATTTAATATAAAT
8131031 GTTATATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATAATTTAATATAAATA
Found at i:8132892 original size:20 final size:19
Alignment explanation
Indices: 8132866--8132918 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
8132856 TATTTCTTAA
* *
8132866 TTTTAATATGTTTAAAATT
1 TTTTAATATGATTAAAATC
*
8132885 TATTTAATTATGATTATAATC
1 T-TTTAA-TATGATTAAAATC
8132906 TTTTAATAT-ATTA
1 TTTTAATATGATTA
8132919 TTTTTTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 4 0.14
19 4 0.14
20 10 0.34
21 11 0.38
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.57
Consensus pattern (19 bp):
TTTTAATATGATTAAAATC
Found at i:8133624 original size:16 final size:17
Alignment explanation
Indices: 8133594--8133634 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
8133584 TTGTAAAATT
8133594 AATTTTAA-A-ATATAA
1 AATTTTAATAGATATAA
*
8133609 TA-TTTAATAGATATAA
1 AATTTTAATAGATATAA
8133625 AATTTTAATA
1 AATTTTAATA
8133635 TCAACACCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 5 0.24
15 2 0.10
16 7 0.33
17 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
AATTTTAATAGATATAA
Found at i:8134008 original size:14 final size:14
Alignment explanation
Indices: 8133989--8134032 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
8133979 GTTTTAAAAA
8133989 TTATTTCTTATTTT
1 TTATTTCTTATTTT
* *
8134003 TTATTTTTTATTTG
1 TTATTTCTTATTTT
*
8134017 CTA-TTCTTATTTT
1 TTATTTCTTATTTT
8134030 TTA
1 TTA
8134033 CTCTAAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (14 bp):
TTATTTCTTATTTT
Found at i:8136115 original size:17 final size:17
Alignment explanation
Indices: 8136093--8136140 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
8136083 AAATATCAAA
8136093 TTAAATTTATTTAAAAT
1 TTAAATTTATTTAAAAT
* *
8136110 TTAAATTTGATTT-TATT
1 TTAAATTT-ATTTAAAAT
*
8136127 TTAAATTTTTTTAA
1 TTAAATTTATTTAA
8136141 TAATACTCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.12
17 18 0.72
18 4 0.16
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
TTAAATTTATTTAAAAT
Found at i:8137173 original size:6 final size:6
Alignment explanation
Indices: 8137162--8137201 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
8137152 TAAAGCCTCA
*
8137162 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CATCTC CCTC
1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTC
8137202 ACCGCTCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.03, C:0.65, G:0.00, T:0.33
Consensus pattern (6 bp):
CCTCTC
Found at i:8137374 original size:2 final size:2
Alignment explanation
Indices: 8137367--8137392 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8137357 ATTATTCGGG
8137367 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
8137393 AATGGAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8139519 original size:27 final size:27
Alignment explanation
Indices: 8139489--8139543 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
8139479 TATGAGACAT
8139489 TATTTAAAGAATTTTGCTAACTGATGA
1 TATTTAAAGAATTTTGCTAACTGATGA
8139516 TATTTAAAGAATTTTGCTAACTGATGA
1 TATTTAAAGAATTTTGCTAACTGATGA
8139543 T
1 T
8139544 CTAAAACACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (27 bp):
TATTTAAAGAATTTTGCTAACTGATGA
Found at i:8145557 original size:2 final size:2
Alignment explanation
Indices: 8145550--8145580 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8145540 TTCTTTCTTT
8145550 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8145581 TCACATGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8146190 original size:17 final size:18
Alignment explanation
Indices: 8146168--8146205 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
8146158 ATAAAATAAG
*
8146168 ATAAAATAATATTAAA-A
1 ATAAAATAAAATTAAATA
8146185 ATAAAATAAAATTAAATA
1 ATAAAATAAAATTAAATA
8146203 ATA
1 ATA
8146206 TCATCATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
ATAAAATAAAATTAAATA
Found at i:8154220 original size:5 final size:5
Alignment explanation
Indices: 8154206--8154237 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
8154196 TATATATATA
8154206 TTTT- TTTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTT
8154238 AGGCTTTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTTC
Found at i:8156286 original size:55 final size:55
Alignment explanation
Indices: 8156180--8156478 Score: 256
Period size: 55 Copynumber: 5.3 Consensus size: 55
8156170 ATTTTTATAC
* ** *
8156180 AAAAATAATTGATACTTTTAACTTTTCCTTAGAGCA--TTTAAAAATTTTATTTTTT
1 AAAAA-AATTGATACTTTTAACTTTT-CTTAAAATATTTTTGAAAATTTTATTTTTT
*
8156235 AAAAAAATTGATACCTTTAACTTTTCTTAAAATATTTTTGAAAATTTTA-TTTTT
1 AAAAAAATTGATACTTTTAACTTTTCTTAAAATATTTTTGAAAATTTTATTTTTT
* **
8156289 AAGAAAAATTGATACTTTCAACTTTTTCTTAAAGCA--TTT--AAATTTT-TTTTTT
1 AA-AAAAATTGATACTTTTAAC-TTTTCTTAAAATATTTTTGAAAATTTTATTTTTT
* * * **
8156341 AAAGAAATTAATA-TTTTCAACTTTTCTTAAACTATTTGTTTTGTTATTATTTTATTTTTT
1 AAAAAAATTGATACTTTT-AACTTTTCTTAAA--ATAT-TTTTG--AAAATTTTATTTTTT
* * **
8156401 AAAAAAATTGATACTTTTAACTTCTCTTCAAAAATATTTTTTAGAAAAATTTATTTTCA
1 AAAAAAATTGATACTTTTAACTTTTCTT--AAAATA-TTTTT-GAAAATTTTATTTTTT
8156460 AAAAAAATTGATACTTTTA
1 AAAAAAATTGATACTTTTA
8156479 TTTTTTATTT
Statistics
Matches: 197, Mismatches: 26, Indels: 38
0.75 0.10 0.15
Matches are distributed among these distances:
50 13 0.07
51 12 0.06
52 14 0.07
53 6 0.03
54 29 0.15
55 37 0.19
56 11 0.06
59 34 0.17
60 32 0.16
61 6 0.03
62 3 0.02
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.49
Consensus pattern (55 bp):
AAAAAAATTGATACTTTTAACTTTTCTTAAAATATTTTTGAAAATTTTATTTTTT
Found at i:8156351 original size:22 final size:23
Alignment explanation
Indices: 8156311--8156357 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
8156301 TACTTTCAAC
* *
8156311 TTTTTCTTAAAGCATTTAA-ATT
1 TTTTTCTTAAAGAAATTAATATT
*
8156333 TTTTTTTTAAAGAAATTAATATT
1 TTTTTCTTAAAGAAATTAATATT
8156356 TT
1 TT
8156358 CAACTTTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTTTCTTAAAGAAATTAATATT
Found at i:8158443 original size:530 final size:530
Alignment explanation
Indices: 8157442--8158490 Score: 1805
Period size: 530 Copynumber: 2.0 Consensus size: 530
8157432 CGCGTCACCG
*
8157442 CTCTTTGCAACGACTCCAACACTCACGACTTTGGTTATAACAGCTTTCACGTCCTCAATCTTGAT
1 CTCTTTGCAACGACTCCAACACTCACGACTTTGGCTATAACAGCTTTCACGTCCTCAATCTTGAT
* * *
8157507 GCAAAACACACATCCAGTTTCTTCACTTTTCACAGGAGTAGAGTAACTAGCGATGTCAGATACGA
66 ACAAAACACACATCCAGTTTCTTCACTTTTCACAGGAGCAGAGTAACCAGCGATGTCAGATACGA
* *
8157572 GAATAGTAGAGCCAGCGAGCTCAAATTGAACCGAAAGGATATGAAGAAACTCCTGCTCAGCCTTG
131 GAATAGTAGAGCCAACGAGCTCAAACTGAACCGAAAGGATATGAAGAAACTCCTGCTCAGCCTTG
* *
8157637 CACTTGGGGTAAAGAGTACAACTATTATCGATAGCGTCAAACGCGGTCTTGTAGAATTGCACTAC
196 CACTTGGGGTAAAGAGTACAACTATTATCGATAACGTCAAACGCGATCTTGTAGAATTGCACTAC
8157702 ATCAACTACCTTTGGTGCTTCCACCATCAACTATGGCTTCATCGTCGTGAACTCCACTGCCATTG
261 ATCAACTACCTTTGGTGCTTCCACCATCAACTATGGCTTCATCGTCGTGAACTCCACTGCCATTG
*
8157767 CCTTTTCGGCTCCTCTGTTCTGGCCTCATACTACATCATTGATGAAAATAAACAAAACTATTCAC
326 CCTTTTCGGCTCCTCCGTTCTGGCCTCATACTACATCATTGATGAAAATAAACAAAACTATTCAC
* *
8157832 AAGAATGGGAATTGGAGCTTATGAGCATGTGGGCTTTTGAACTAAAATCTCTCAAAAATCAATTT
391 AAGAATGGGAATTGGAGCTTATGAGCATGTGGACTTCTGAACTAAAATCTCTCAAAAATCAATTT
*
8157897 GTTGGCTTTATCAAATCCTTTGACTTTTCTGGTTTGCTTCTTTCCCTTTCTCGTTTGCTTCTTTT
456 GTTGGCTTTATCAAATCATTTGACTTTTCTGGTTTGCTTCTTTCCCTTTCTCGTTTGCTTCTTTT
8157962 AAACTAAAAT
521 AAACTAAAAT
* * *
8157972 CTCTTTGCAATGGCTCCAGCACTCACGACTTTGGCTATAACAGCTTTCACGTCCTCAATCTTGAT
1 CTCTTTGCAACGACTCCAACACTCACGACTTTGGCTATAACAGCTTTCACGTCCTCAATCTTGAT
* *
8158037 ACAAAACACACATCCAGTTTCCTT-ATTTTTCACAGGAGCAGAGTTACCAGCGATGTCAGATACG
66 ACAAAACACACATCCAGTTT-CTTCACTTTTCACAGGAGCAGAGTAACCAGCGATGTCAGATACG
* * * * *
8158101 AGAATGGTAGAGCCAACGAGCTCGAACTGAACCGAGAGGATATGAAGAAGCTCTTGCTCAGCCTT
130 AGAATAGTAGAGCCAACGAGCTCAAACTGAACCGAAAGGATATGAAGAAACTCCTGCTCAGCCTT
* *
8158166 GCACTTGGGGTAAAGAGTACAGCTATTATCGATAACGTCAAATGCGATCTTGTAGAATTGCACTA
195 GCACTTGGGGTAAAGAGTACAACTATTATCGATAACGTCAAACGCGATCTTGTAGAATTGCACTA
*
8158231 CATCAACTACCTTTGGTGCTTCCACCATCAACTATGGCTTTATCGTCGTGAACTCCACTGCCATT
260 CATCAACTACCTTTGGTGCTTCCACCATCAACTATGGCTTCATCGTCGTGAACTCCACTGCCATT
* * *
8158296 GCCTTTTCGGCTCCTCCGTTCTGGCCTCCTGCTACATCATTGATGAAAATAAACAAAACTCTTCA
325 GCCTTTTCGGCTCCTCCGTTCTGGCCTCATACTACATCATTGATGAAAATAAACAAAACTATTCA
8158361 CAAGAATGGGAATTGGAGCTTAT-AGGCATGTGGACTTCTGAACTAAAATCTCTCAAAAATCAAT
390 CAAGAATGGGAATTGGAGCTTATGA-GCATGTGGACTTCTGAACTAAAATCTCTCAAAAATCAAT
*
8158425 TTGTTGGCTTTATCAAATCATTTTACTTTTCTGGTTTGCTTCTTTCCCTTTCTCGTTTGCTTCTT
454 TTGTTGGCTTTATCAAATCATTTGACTTTTCTGGTTTGCTTCTTTCCCTTTCTCGTTTGCTTCTT
8158490 T
519 T
8158491 CTTTCTTAGA
Statistics
Matches: 488, Mismatches: 29, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
529 1 0.00
530 484 0.99
531 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (530 bp):
CTCTTTGCAACGACTCCAACACTCACGACTTTGGCTATAACAGCTTTCACGTCCTCAATCTTGAT
ACAAAACACACATCCAGTTTCTTCACTTTTCACAGGAGCAGAGTAACCAGCGATGTCAGATACGA
GAATAGTAGAGCCAACGAGCTCAAACTGAACCGAAAGGATATGAAGAAACTCCTGCTCAGCCTTG
CACTTGGGGTAAAGAGTACAACTATTATCGATAACGTCAAACGCGATCTTGTAGAATTGCACTAC
ATCAACTACCTTTGGTGCTTCCACCATCAACTATGGCTTCATCGTCGTGAACTCCACTGCCATTG
CCTTTTCGGCTCCTCCGTTCTGGCCTCATACTACATCATTGATGAAAATAAACAAAACTATTCAC
AAGAATGGGAATTGGAGCTTATGAGCATGTGGACTTCTGAACTAAAATCTCTCAAAAATCAATTT
GTTGGCTTTATCAAATCATTTGACTTTTCTGGTTTGCTTCTTTCCCTTTCTCGTTTGCTTCTTTT
AAACTAAAAT
Found at i:8158477 original size:21 final size:21
Alignment explanation
Indices: 8158452--8158491 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8158442 TCATTTTACT
*
8158452 TTTCTGGTTTGCTTCTTTCCC
1 TTTCTCGTTTGCTTCTTTCCC
8158473 TTTCTCGTTTGCTTCTTTC
1 TTTCTCGTTTGCTTCTTTC
8158492 TTTCTTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.12, T:0.60
Consensus pattern (21 bp):
TTTCTCGTTTGCTTCTTTCCC
Found at i:8158586 original size:21 final size:21
Alignment explanation
Indices: 8158561--8158600 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8158551 TCATTTTACT
*
8158561 TTTCTGGTTTGCTTCTTTCCC
1 TTTCTCGTTTGCTTCTTTCCC
8158582 TTTCTCGTTTGCTTCTTTC
1 TTTCTCGTTTGCTTCTTTC
8158601 TTTCTTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.12, T:0.60
Consensus pattern (21 bp):
TTTCTCGTTTGCTTCTTTCCC
Found at i:8158598 original size:109 final size:109
Alignment explanation
Indices: 8158407--8158620 Score: 428
Period size: 109 Copynumber: 2.0 Consensus size: 109
8158397 TCTGAACTAA
8158407 AATCTCTCAAAAATCAATTTGTTGGCTTTATCAAATCATTTTACTTTTCTGGTTTGCTTCTTTCC
1 AATCTCTCAAAAATCAATTTGTTGGCTTTATCAAATCATTTTACTTTTCTGGTTTGCTTCTTTCC
8158472 CTTTCTCGTTTGCTTCTTTCTTTCTTAGACTTGCAGTCAGTGCC
66 CTTTCTCGTTTGCTTCTTTCTTTCTTAGACTTGCAGTCAGTGCC
8158516 AATCTCTCAAAAATCAATTTGTTGGCTTTATCAAATCATTTTACTTTTCTGGTTTGCTTCTTTCC
1 AATCTCTCAAAAATCAATTTGTTGGCTTTATCAAATCATTTTACTTTTCTGGTTTGCTTCTTTCC
8158581 CTTTCTCGTTTGCTTCTTTCTTTCTTAGACTTGCAGTCAG
66 CTTTCTCGTTTGCTTCTTTCTTTCTTAGACTTGCAGTCAG
8158621 GGCACTTCTT
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 105 1.00
ACGTcount: A:0.18, C:0.22, G:0.12, T:0.48
Consensus pattern (109 bp):
AATCTCTCAAAAATCAATTTGTTGGCTTTATCAAATCATTTTACTTTTCTGGTTTGCTTCTTTCC
CTTTCTCGTTTGCTTCTTTCTTTCTTAGACTTGCAGTCAGTGCC
Found at i:8159017 original size:4 final size:4
Alignment explanation
Indices: 8158996--8159045 Score: 50
Period size: 4 Copynumber: 12.2 Consensus size: 4
8158986 TAAATTAATG
*
8158996 ATAA ATATA ATAAA ATAA ATAA ATCAA CTAA A-AA ATAA AT-A ATAA ATAA
1 ATAA ATA-A AT-AA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA
8159045 A
1 A
8159046 AAAAAAGATC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 6 0.15
4 23 0.59
5 9 0.23
6 1 0.03
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:8159139 original size:20 final size:21
Alignment explanation
Indices: 8159099--8159140 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8159089 CTAATGGACT
**
8159099 TAAACCCAATCCTTATTAGAC
1 TAAACCCAATAATTATTAGAC
8159120 TAAACCCAATAATT-TTAGAC
1 TAAACCCAATAATTATTAGAC
8159140 T
1 T
8159141 CGAACGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (21 bp):
TAAACCCAATAATTATTAGAC
Found at i:8161262 original size:29 final size:28
Alignment explanation
Indices: 8161226--8161288 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
8161216 TAATGAAATA
8161226 TTTAATGTGATATTTAAATTTAAAAATTT
1 TTTAATGTGATATTTAAA-TTAAAAATTT
* *
8161255 TTTAATGTGATATTTGAATTATAAATTT
1 TTTAATGTGATATTTAAATTAAAAATTT
*
8161283 ATTAAT
1 TTTAAT
8161289 TAATATATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 14 0.45
29 17 0.55
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (28 bp):
TTTAATGTGATATTTAAATTAAAAATTT
Found at i:8164646 original size:10 final size:10
Alignment explanation
Indices: 8164605--8164658 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
8164595 AATAAAAAAT
*
8164605 AATTTTTT-T
1 AATTTTTTAA
8164614 AATTTTATT-A
1 AATTTT-TTAA
8164624 AATTTATTTAA
1 AATTT-TTTAA
8164635 AATTTTTTAA
1 AATTTTTTAA
*
8164645 AA-ATTTTAA
1 AATTTTTTAA
8164654 AATTT
1 AATTT
8164659 AAAATTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
9 14 0.37
10 17 0.45
11 7 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:8164704 original size:16 final size:15
Alignment explanation
Indices: 8164662--8164708 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
8164652 AAAATTTAAA
*
8164662 ATTTATTATTTTTAT-
1 ATTT-TTATTTATATC
8164677 ATTTTTATTTATATC
1 ATTTTTATTTATATC
8164692 ATTTTTATATTATATC
1 ATTTTTAT-TTATATC
8164708 A
1 A
8164709 CTGTATCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 9 0.31
15 12 0.41
16 8 0.28
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTTTATTTATATC
Found at i:8165815 original size:21 final size:21
Alignment explanation
Indices: 8165786--8165836 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
8165776 CACGGTGCTA
8165786 GTAGGCACAGTAGTAGTAGCT
1 GTAGGCACAGTAGTAGTAGCT
*
8165807 GTGGGCACAGTAGTAGTAGCT
1 GTAGGCACAGTAGTAGTAGCT
8165828 GTAGGCACA
1 GTAGGCACA
8165837 TTTCTTGCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.16, G:0.35, T:0.22
Consensus pattern (21 bp):
GTAGGCACAGTAGTAGTAGCT
Found at i:8166332 original size:90 final size:90
Alignment explanation
Indices: 8166211--8166376 Score: 251
Period size: 90 Copynumber: 1.8 Consensus size: 90
8166201 TGTATGTGTG
* *
8166211 TATAAATATTGTAGTCATAGATAATAATATAAATATTGTACATATGTATATTTATATATTTATAA
1 TATAAATATTGTAGTCATAGATAATAATATAAATATTATACATATATATATTTATATATTTATAA
8166276 TTTTTTAATCAGACACGTGTATATA
66 TTTTTTAATCAGACACGTGTATATA
* ** * * * *
8166301 TATATATATTGTAGTCATAGATGGTAGTATAAATATTATACGTGTATATATTTATATATTTATTA
1 TATAAATATTGTAGTCATAGATAATAATATAAATATTATACATATATATATTTATATATTTATAA
8166366 TTTTTTAATCA
66 TTTTTTAATCA
8166377 AATGCATGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 67 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.47
Consensus pattern (90 bp):
TATAAATATTGTAGTCATAGATAATAATATAAATATTATACATATATATATTTATATATTTATAA
TTTTTTAATCAGACACGTGTATATA
Found at i:8166396 original size:90 final size:90
Alignment explanation
Indices: 8166216--8166399 Score: 242
Period size: 90 Copynumber: 2.0 Consensus size: 90
8166206 GTGTGTATAA
* *
8166216 ATATTGTAGTCATAGATAATAATATAAATATTGTACATATGTATATTTATATATTTATAATTTTT
1 ATATTGTAGTCATAGATAATAATATAAATATTATACATATATATATTTATATATTTATAATTTTT
* * * *
8166281 TAATCAGACACGTGTATATATATAT
66 TAATCAAACACATGTAAATACATAT
** * * * *
8166306 ATATTGTAGTCATAGATGGTAGTATAAATATTATACGTGTATATATTTATATATTTATTATTTTT
1 ATATTGTAGTCATAGATAATAATATAAATATTATACATATATATATTTATATATTTATAATTTTT
**
8166371 TAATCAAATGCATGTAAATACATAT
66 TAATCAAACACATGTAAATACATAT
8166396 ATAT
1 ATAT
8166400 ATATATATAT
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 80 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (90 bp):
ATATTGTAGTCATAGATAATAATATAAATATTATACATATATATATTTATATATTTATAATTTTT
TAATCAAACACATGTAAATACATAT
Found at i:8166542 original size:2 final size:2
Alignment explanation
Indices: 8166535--8166563 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8166525 TCGCCTGTAC
8166535 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8166564 TTGGACTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8166884 original size:6 final size:6
Alignment explanation
Indices: 8166875--8166908 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
8166865 CCAATTCCAC
*
8166875 CACCAG CACCAG CACCAG CACCAG CACCAT CACC
1 CACCAG CACCAG CACCAG CACCAG CACCAG CACC
8166909 TCCAAATCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.32, C:0.53, G:0.12, T:0.03
Consensus pattern (6 bp):
CACCAG
Found at i:8170469 original size:17 final size:17
Alignment explanation
Indices: 8170447--8170479 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8170437 AAATTAAAAA
8170447 GTTTTACACTTTTTTTT
1 GTTTTACACTTTTTTTT
*
8170464 GTTTTATACTTTTTTT
1 GTTTTACACTTTTTTT
8170480 AGTCATTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (17 bp):
GTTTTACACTTTTTTTT
Found at i:8171486 original size:20 final size:22
Alignment explanation
Indices: 8171461--8171506 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
8171451 ATAGTTTAAA
8171461 ATTTAA-AAAA-AAATAAA-TAT
1 ATTTAATAAAATAAA-AAATTAT
8171481 ATTTAATAAAATAAAAAATTAT
1 ATTTAATAAAATAAAAAATTAT
8171503 ATTT
1 ATTT
8171507 TATATTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.26
21 7 0.30
22 10 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
ATTTAATAAAATAAAAAATTAT
Found at i:8174113 original size:61 final size:61
Alignment explanation
Indices: 8174030--8174148 Score: 141
Period size: 61 Copynumber: 2.0 Consensus size: 61
8174020 TCTTTAATAA
* * * *
8174030 TAAAAAAAATGAAAGGAAATTATTCAAGGCATTTTTTGTCAGAAACGCTTTGAATAATCTT
1 TAAAAAAAATGAAAGGAAATTATTCAAGGCATTTTTAGCCAAAAACGCCTTGAATAATCTT
* * * * *
8174091 TAAAAAAAATTAGAA-GAGATTATTGAATGCGTTTTTAGCCAAAAACGCCTTGAATAAT
1 TAAAAAAAATGA-AAGGAAATTATTCAAGGCATTTTTAGCCAAAAACGCCTTGAATAAT
8174149 TTTTTTAGGG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
61 46 0.96
62 2 0.04
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (61 bp):
TAAAAAAAATGAAAGGAAATTATTCAAGGCATTTTTAGCCAAAAACGCCTTGAATAATCTT
Found at i:8174255 original size:62 final size:60
Alignment explanation
Indices: 8174145--8174259 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 60
8174135 ACGCCTTGAA
* * *
8174145 TAATTTTTTTAGGGAATATTCAAAGTGTTTTTTGCTAAAGACGTCTTGAATAACCTCATT
1 TAATTTTTTTAGAGAATATTCAAAGTGTTTTTTGCCAAAAACGTCTTGAATAACCTCATT
*
8174205 TAATTTTTTGTAAGAGAATATT-AAAGGTGTTTTTTGGCCAAAAATG-CTTGAATAA
1 TAATTTTTT-T-AGAGAATATTCAAA-GTGTTTTTT-GCCAAAAACGTCTTGAATAA
8174260 TCCCACCAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
60 9 0.19
61 4 0.09
62 27 0.57
63 7 0.15
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (60 bp):
TAATTTTTTTAGAGAATATTCAAAGTGTTTTTTGCCAAAAACGTCTTGAATAACCTCATT
Found at i:8174509 original size:61 final size:60
Alignment explanation
Indices: 8174429--8174761 Score: 206
Period size: 59 Copynumber: 5.5 Consensus size: 60
8174419 TTTTTGTAAG
* * *
8174429 GGATTATTCAA-GTCATTTTTTGATAAAAAATATCTTGAATAATCTCCTAAAAAATGAAAGA
1 GGATTATTCAAGGTGA-TTTTTGACAAAAAAT-TCTTGAATAATCTCCAAAAAAATGAAAGA
* * *
8174490 GGATTATTCAAGGTG-TTTTTAGCCAAAAAGATT-TTAAATAATCTTCAAAAAAAAAATTGAAAG
1 GGATTATTCAAGGTGATTTTT-GACAAAAA-ATTCTTGAATAATC-TC--CAAAAAAA-TGAAAG
8174553 A
60 A
* * * * * * *
8174554 -AATTATTGAAAGT-ATTTTTGACCAAAAATGCATTGAATAATCT-AAAAAAAATAGAACG-
1 GGATTATTCAAGGTGATTTTTGACAAAAAATTC-TTGAATAATCTCCAAAAAAAT-GAAAGA
* * ** *
8174612 GAATTATTCAAGGTGATTTTTGGCAAAAAACACATTGAATAATCTCTCAAAAAAATTAGAAG-
1 GGATTATTCAAGGTGATTTTTGACAAAAAATTC-TTGAATAATCTC-CAAAAAAATGA-AAGA
** *** *
8174674 GGATTATTGC-AGGTG-TTTTTGGTTAAAAACGCCTTGAATAATCT-CAAAAAAATTGAAGGA
1 GGATTATT-CAAGGTGATTTTT-GACAAAAAATTCTTGAATAATCTCCAAAAAAA-TGAAAGA
*
8174734 -GATTATTAAAGGT-ATTTTTGACAAAAAA
1 GGATTATTCAAGGTGATTTTTGACAAAAAA
8174762 ACGTTTTAAA
Statistics
Matches: 215, Mismatches: 35, Indels: 47
0.72 0.12 0.16
Matches are distributed among these distances:
58 7 0.03
59 49 0.23
60 42 0.20
61 39 0.18
62 40 0.19
63 31 0.14
64 7 0.03
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.32
Consensus pattern (60 bp):
GGATTATTCAAGGTGATTTTTGACAAAAAATTCTTGAATAATCTCCAAAAAAATGAAAGA
Found at i:8174715 original size:244 final size:246
Alignment explanation
Indices: 8174445--8175020 Score: 600
Period size: 244 Copynumber: 2.4 Consensus size: 246
8174435 TTCAAGTCAT
* * * * * *
8174445 TTTTTGATAAAAAATATCTTGAATAATCTCCTAAAAAA-TGAAAGAGGATTATTCAAGGTGTTTT
1 TTTTTGATCAAAAACACCTTGAATAATCTCCAAAAAAATTGAAAGAGGATTATTAAAGGTATTTT
* * *
8174509 TAGCCAAAAAGATTTTAAATAATCTTCAAAAAAAAAATTGAAAGAAATTATTGAAAGT-ATTTTT
66 TAGACAAAAAAATTTTAAATAATC-CCAAAAAAAAAATTGAAAGAAATTATTGAAAGTGATTTTT
* *
8174573 GACCAAAAATGCATTGAATAA-TCT-AAAAAAAATAGAACGGA-ATTATTCAAGGTGATTTTTGG
130 GACCAAAAATACATTGAATAATTCTCAAAAAAAATAGAA-GGAGATTATTCAAGGT-ATTTTTGA
*
8174635 CAAAAAACACATTGAATAATCTCTCAAAAAAATTAGAAGGG-ATTATTGCAGGTG
193 CAAAAAACACATTGAATAATCT-TCAAAAAAATTAGAAGGGAATTATTGAAGGTG
* * * *
8174689 TTTTTGGTTAAAAACGCCTTGAATAATCT-CAAAAAAATTGAAGGA-GATTATTAAAGGTATTTT
1 TTTTTGATCAAAAACACCTTGAATAATCTCCAAAAAAATTGAAAGAGGATTATTAAAGGTATTTT
*** *** ** * * *
8174752 T-GACAAAAAAACGTTTTAAATAA-CCCAATTCAATTTTTTTAAGAGATTATTTAAAGTGTTTTT
66 TAGACAAAAAAA--TTTTAAATAATCCCAAAAAAAAAATTGAAAGAAATTATTGAAAGTGATTTT
* * * * * * *
8174815 TGACCAAAAATACCTTGAATAATTTTCAAAAAAATTTGGAGGAGATTATTGAAGGTATTTTTTAC
129 TGACCAAAAATACATTGAATAATTCTCAAAAAAAATAGAAGGAGATTATTCAAGGTATTTTTGAC
* * * * *
8174880 AAAAAATACCTTTAATAATCTTTAAAAAAATTTGAAGGGAATTATTGAAGGTG
194 AAAAAACACATTGAATAATCTTCAAAAAAATTAGAAGGGAATTATTGAAGGTG
* * *
8174933 TTTTTTATCAGAAACACCTTGAATAATC-CCAAAAAAATTTG-AACAGGATTATTAAAGGTATTT
1 TTTTTGATCAAAAACACCTTGAATAATCTCCAAAAAAA-TTGAAAGAGGATTATTAAAGGTATTT
* * *
8174996 TTAGACAAAAATACTTTCAATAATC
65 TTAGACAAAAAAATTTTAAATAATC
8175021 ACACTTTTCC
Statistics
Matches: 271, Mismatches: 48, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
242 30 0.11
243 65 0.24
244 123 0.45
245 44 0.16
246 9 0.03
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (246 bp):
TTTTTGATCAAAAACACCTTGAATAATCTCCAAAAAAATTGAAAGAGGATTATTAAAGGTATTTT
TAGACAAAAAAATTTTAAATAATCCCAAAAAAAAAATTGAAAGAAATTATTGAAAGTGATTTTTG
ACCAAAAATACATTGAATAATTCTCAAAAAAAATAGAAGGAGATTATTCAAGGTATTTTTGACAA
AAAACACATTGAATAATCTTCAAAAAAATTAGAAGGGAATTATTGAAGGTG
Found at i:8174762 original size:121 final size:120
Alignment explanation
Indices: 8174445--8175020 Score: 409
Period size: 121 Copynumber: 4.7 Consensus size: 120
8174435 TTCAAGTCAT
* * * * * * *
8174445 TTTTTGATAAAAAATATCTTGAATAATCTCCTAAAAAA--TGAAAGAGGATTATTCAAGGTGTTT
1 TTTTTGATCAAAAACACCTTGAATAATCT-CAAAAAAATTTGAAGGA-GATTATTAAAGGTATTT
* * ** * ** * *
8174508 TTAGCCAAAAAGATTTTAAATAATCT-TCAAAAAAAAAATTGAAAGAAATTATTGAAAGTA
64 TT-GACAAAAAAACCTTAAATAATCTCTC--AAAAAAATTTG-AAGGGATTATTGAAGGTG
* ** * * * *
8174568 TTTTTGACCAAAAATGCATTGAATAATCT-AAAAAAAATAGAACGGA-ATTATTCAAGGTGATTT
1 TTTTTGATCAAAAACACCTTGAATAATCTCAAAAAAATTTGAA-GGAGATTATTAAAGGT-ATTT
* * * * *
8174631 TTGGCAAAAAACACATTGAATAATCTCTCAAAAAAATTAGAAGGGATTATTGCAGGTG
64 TTGACAAAAAA-ACCTTAAATAATCTCTCAAAAAAATTTGAAGGGATTATTGAAGGTG
* * *
8174689 TTTTTGGTTAAAAACGCCTTGAATAATCTCAAAAAAA-TTGAAGGAGATTATTAAAGGTATTTTT
1 TTTTTGATCAAAAACACCTTGAATAATCTCAAAAAAATTTGAAGGAGATTATTAAAGGTATTTTT
* *** * * * *
8174753 GACAAAAAAACGTTTTAAATAA-C-C-CAATTCAATTTTTTTAAGAGATTATTTAAAGTG
66 GACAAAAAAAC--CTTAAATAATCTCTCAA---AAAAATTTGAAGGGATTATTGAAGGTG
* * * * *
8174810 TTTTTTGACCAAAAATACCTTGAATAATTTTCAAAAAAATTTGGAGGAGATTATTGAAGGTATTT
1 -TTTTTGATCAAAAACACCTTGAATAA-TCTCAAAAAAATTTGAAGGAGATTATTAAAGGTATTT
* * *
8174875 TTTACAAAAAATACCTTTAATAATCT-TTAAAAAAATTTGAAGGGAATTATTGAAGGTG
64 TTGACAAAAAA-ACCTTAAATAATCTCTCAAAAAAATTTGAAGGG-ATTATTGAAGGTG
* * * *
8174933 TTTTTTATCAGAAACACCTTGAATAATCCCAAAAAAATTTGAA-CAGGATTATTAAAGGTATTTT
1 TTTTTGATCAAAAACACCTTGAATAATCTCAAAAAAATTTGAAGGA-GATTATTAAAGGTATTTT
* * *
8174997 TAGACAAAAATACTTTCAATAATC
65 T-GACAAAAAAACCTTAAATAATC
8175021 ACACTTTTCC
Statistics
Matches: 358, Mismatches: 72, Indels: 48
0.75 0.15 0.10
Matches are distributed among these distances:
118 3 0.01
119 3 0.01
120 19 0.05
121 126 0.35
122 94 0.26
123 71 0.20
124 38 0.11
125 4 0.01
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (120 bp):
TTTTTGATCAAAAACACCTTGAATAATCTCAAAAAAATTTGAAGGAGATTATTAAAGGTATTTTT
GACAAAAAAACCTTAAATAATCTCTCAAAAAAATTTGAAGGGATTATTGAAGGTG
Found at i:8174984 original size:60 final size:58
Alignment explanation
Indices: 8174421--8175020 Score: 291
Period size: 61 Copynumber: 9.8 Consensus size: 58
8174411 CCAATCATTT
* * * *
8174421 TTTGTAAGGGATTATTCAA-GTCATTTTTTGATAAAAAATATCTTGAATAATCTCCTAAAAAA
1 TTTG-AAGGGATTATTGAAGGT-ATTTTTT-A-CAAAAATACCTTGAATAATCT-CAAAAAAA
* * * ** *
8174483 --TGAAAGAGGATTATTCAAGGT-GTTTTTAGCCAAAAAGATTTTAAATAATCTTCAAAAAAAAA
1 TTTG-AAG-GGATTATTGAAGGTATTTTTTA--CAAAAATACCTTGAATAATC-TC--AAAAAAA
* ** * * * *
8174545 ATTGAAAGAAATTATTGAAAGTATTTTTGACCAAAAATGCATTGAATAATCT-AAAAAAA
1 TTTG-AAGGGATTATTGAAGGTATTTTTTA-CAAAAATACCTTGAATAATCTCAAAAAAA
* * * * **
8174604 ATAGAACGGAATTATTCAAGGTGATTTTTGGCAAAAA-ACACATTGAATAATCTCTCAAAAAAA
1 TTTGAA-GGGATTATTGAAGGT-ATTTTTTACAAAAATAC-C-TTGAATAA--TCTCAAAAAAA
* * * * **
8174667 TTAGAAGGGATTATTGCAGGTGTTTTTGGT-TAAAAACGCCTTGAATAATCTCAAAAAAA
1 TTTGAAGGGATTATTGAAGGTATTTTT--TACAAAAATACCTTGAATAATCTCAAAAAAA
* * * * * * ***
8174726 -TTGAAGGAGATTATTAAAGGTATTTTTGACAAAAAAACGTTTTAAATAA-CCCAATTCAATTT
1 TTTGAAGG-GATTATTGAAGGTATTTTTTACAAAAATAC--CTTGAATAATCTCAA---AAAAA
* * * * * *
8174788 TTTTAAGAGATTATTTAAAGTGTTTTTTGACCAAAAATACCTTGAATAATTTTCAAAAAAA
1 TTTGAAGGGATTATTGAAGGTATTTTTT-A-CAAAAATACCTTGAATAA-TCTCAAAAAAA
* * *
8174849 TTTGGAGGAGATTATTGAAGGTATTTTTTACAAAAAATACCTTTAATAATCTTTAAAAAAA
1 TTTGAAGG-GATTATTGAAGGTATTTTTTAC-AAAAATACCTTGAATAATC-TCAAAAAAA
* * * *
8174910 TTTGAAGGGAATTATTGAAGGTGTTTTTTATCAGAAACACCTTGAATAATCCCAAAAAAA
1 TTTGAAGGG-ATTATTGAAGGTATTTTTTA-CAAAAATACCTTGAATAATCTCAAAAAAA
* * * * *
8174970 TTTGAACAGGATTATTAAAGGTATTTTTAGACAAAAATACTTTCAATAATC
1 TTTGAA-GGGATTATTGAAGGTATTTTT-TACAAAAATACCTTGAATAATC
8175021 ACACTTTTCC
Statistics
Matches: 414, Mismatches: 86, Indels: 78
0.72 0.15 0.13
Matches are distributed among these distances:
58 15 0.04
59 60 0.14
60 97 0.23
61 102 0.25
62 73 0.18
63 45 0.11
64 22 0.05
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (58 bp):
TTTGAAGGGATTATTGAAGGTATTTTTTACAAAAATACCTTGAATAATCTCAAAAAAA
Found at i:8175890 original size:34 final size:35
Alignment explanation
Indices: 8175852--8175928 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
8175842 TAAAACTTGC
* * *
8175852 TAAATTTAAT-G-ATGTTTTCTAGTATAAATGGCTT
1 TAAATTTAATAGCAT-TTTTCTACTATAAACGCCTT
*
8175886 TAAATTTAGTAGCATTTTTCTACTATAAACGCCTT
1 TAAATTTAATAGCATTTTTCTACTATAAACGCCTT
8175921 TAAATTTA
1 TAAATTTA
8175929 GCAACATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 9 0.24
35 26 0.70
36 2 0.05
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.45
Consensus pattern (35 bp):
TAAATTTAATAGCATTTTTCTACTATAAACGCCTT
Found at i:8175913 original size:35 final size:35
Alignment explanation
Indices: 8175866--8175938 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
8175856 TTTAATGATG
* * * * *
8175866 TTTTCTAGTATAAATGGCTTTAAATTTAGTAGCAT
1 TTTTCTACTATAAACGCCTTTAAATTTAGCAACAT
8175901 TTTTCTACTATAAACGCCTTTAAATTTAGCAACAT
1 TTTTCTACTATAAACGCCTTTAAATTTAGCAACAT
8175936 TTT
1 TTT
8175939 ATGATAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.45
Consensus pattern (35 bp):
TTTTCTACTATAAACGCCTTTAAATTTAGCAACAT
Found at i:8181325 original size:23 final size:22
Alignment explanation
Indices: 8181299--8181349 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
8181289 ATCGTAATTT
8181299 AAAAATAAATATATATAATT-TTA
1 AAAAATAAA-A-ATATAATTATTA
* *
8181322 AAAAATTAAAGTATAATTATTA
1 AAAAATAAAAATATAATTATTA
8181344 AAAAAT
1 AAAAAT
8181350 TTTAATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.28
22 10 0.40
23 8 0.32
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
AAAAATAAAAATATAATTATTA
Found at i:8181925 original size:7 final size:7
Alignment explanation
Indices: 8181894--8181951 Score: 64
Period size: 7 Copynumber: 8.0 Consensus size: 7
8181884 TTTTATTAAA
8181894 TTTATAT
1 TTTATAT
* *
8181901 ATAATAT
1 TTTATAT
8181908 TATTATAAT
1 T-TTAT-AT
8181917 TTTATATT
1 TTTATA-T
8181925 TTTATAT
1 TTTATAT
8181932 TTTATAT
1 TTTATAT
8181939 TTTAT-T
1 TTTATAT
8181945 TTTATAT
1 TTTATAT
8181952 CATATTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 6 0.14
7 20 0.47
8 14 0.33
9 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATAT
Found at i:8181927 original size:8 final size:8
Alignment explanation
Indices: 8181904--8181941 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
8181894 TTTATATATA
*
8181904 ATATTATT
1 ATATTTTT
*
8181912 ATAATTTT
1 ATATTTTT
8181920 ATATTTTT
1 ATATTTTT
8181928 ATA-TTTT
1 ATATTTTT
8181935 ATATTTT
1 ATATTTT
8181942 ATTTTTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
ATATTTTT
Found at i:8181929 original size:16 final size:15
Alignment explanation
Indices: 8181876--8181951 Score: 68
Period size: 15 Copynumber: 5.1 Consensus size: 15
8181866 ATAAAATATA
8181876 ATTTTT-TATTTTATT
1 ATTTTTATATTTTA-T
** * *
8181891 AAATTTATATATAAT
1 ATTTTTATATTTTAT
*
8181906 ATTATTATAATTTTAT
1 ATTTTTAT-ATTTTAT
8181922 ATTTTTATATTTTAT
1 ATTTTTATATTTTAT
8181937 A-TTTTAT-TTTTAT
1 ATTTTTATATTTTAT
8181950 AT
1 AT
8181952 CATATTTTAA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
13 7 0.15
14 6 0.12
15 18 0.38
16 17 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTTATATTTTAT
Found at i:8183845 original size:14 final size:14
Alignment explanation
Indices: 8183826--8183863 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
8183816 GCGGCACGAG
8183826 GTTTTGTTTTTGTT
1 GTTTTGTTTTTGTT
*
8183840 GTTTTGTTGTTGTT
1 GTTTTGTTTTTGTT
*
8183854 -TTTTCTTTTT
1 GTTTTGTTTTT
8183864 CCTTTTGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 8 0.38
14 13 0.62
ACGTcount: A:0.00, C:0.03, G:0.18, T:0.79
Consensus pattern (14 bp):
GTTTTGTTTTTGTT
Found at i:8187067 original size:3 final size:3
Alignment explanation
Indices: 8187059--8187091 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
8187049 GAGTTTTCTT
*
8187059 TTA TTA TTA TTC TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8187092 AAAGGTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8188576 original size:3 final size:3
Alignment explanation
Indices: 8188568--8188619 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
8188558 TCAGTAAGAG
8188568 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8188616 ATA A
1 ATA A
8188620 AATCCTTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8199017 original size:27 final size:27
Alignment explanation
Indices: 8198981--8199032 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
8198971 ATAACTAAAA
* *
8198981 TTTAATAACTTTTTATATAATTTTGAT
1 TTTAATAACTTTTAATAAAATTTTGAT
8199008 TTTAATAACTTTTAATAAAATTTTG
1 TTTAATAACTTTTAATAAAATTTTG
8199033 GTAACTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (27 bp):
TTTAATAACTTTTAATAAAATTTTGAT
Found at i:8199030 original size:21 final size:21
Alignment explanation
Indices: 8199006--8199080 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
8198996 TATAATTTTG
*
8199006 ATTTTAATAACTTTTAATAAA
1 ATTTTAATAACTTTTAATATA
** *
8199027 ATTTTGGTAACTTTTGATATTA
1 ATTTTAATAACTTTTAATA-TA
* **
8199049 A-TTTGATAACTTACAATATA
1 ATTTTAATAACTTTTAATATA
8199069 ATTTTAATAACT
1 ATTTTAATAACT
8199081 ATTGACAAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
20 3 0.07
21 38 0.88
22 2 0.05
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (21 bp):
ATTTTAATAACTTTTAATATA
Found at i:8199360 original size:21 final size:21
Alignment explanation
Indices: 8199333--8199535 Score: 158
Period size: 21 Copynumber: 9.6 Consensus size: 21
8199323 AATAAAATTT
*
8199333 TAATTTTGATAACTTTTGATA
1 TAATTTTGGTAACTTTTGATA
* * *
8199354 AAATTTTTGGTAACTTATAATA
1 TAA-TTTTGGTAACTTTTGATA
* * *
8199376 TAATTTTGGCAACCTTCGATA
1 TAATTTTGGTAACTTTTGATA
* *
8199397 TAATTTTAGTAACTTTCGATA
1 TAATTTTGGTAACTTTTGATA
* * *
8199418 CAATTTTGGTAACTTATAATA
1 TAATTTTGGTAACTTTTGATA
* *
8199439 TAATTTTGATAACTTTCGATA
1 TAATTTTGGTAACTTTTGATA
* * * *
8199460 TTAGTTTGATAA-TTTAGAATA
1 TAATTTTGGTAACTTTTG-ATA
* *
8199481 TAATTTTGGTAACTATTAATA
1 TAATTTTGGTAACTTTTGATA
*
8199502 -AGATTTTGGTAACTTCTTGATG
1 TA-ATTTTGGTAACTT-TTGATA
*
8199524 TAATTTTAGTAA
1 TAATTTTGGTAA
8199536 TTAATCTTTT
Statistics
Matches: 140, Mismatches: 36, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
20 5 0.04
21 102 0.73
22 32 0.23
23 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.46
Consensus pattern (21 bp):
TAATTTTGGTAACTTTTGATA
Found at i:8199440 original size:63 final size:63
Alignment explanation
Indices: 8199333--8199514 Score: 210
Period size: 63 Copynumber: 2.9 Consensus size: 63
8199323 AATAAAATTT
* *
8199333 TAATTTTGATAACTTTTGATAAAATTTTTGGTAACTTATAATATAATTTTGGCAACCTTCGATA
1 TAATTTTGATAACTTTAGATAAAA-TTTTGGTAACTTATAATATAATTTTGGTAACCTTCGATA
* * * *
8199397 TAATTTT-AGTAACTTTCGATACAATTTTGGTAACTTATAATATAATTTTGATAACTTTCGATA
1 TAATTTTGA-TAACTTTAGATAAAATTTTGGTAACTTATAATATAATTTTGGTAACCTTCGATA
* * *
8199460 TTAGTTTGATAA-TTTAGAATATAATTTTGGTAAC-TATTAATA-AGATTTTGGTAAC
1 TAATTTTGATAACTTTAG-ATAAAATTTTGGTAACTTA-TAATATA-ATTTTGGTAAC
8199515 TTCTTGATGT
Statistics
Matches: 103, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
62 7 0.07
63 75 0.73
64 21 0.20
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.46
Consensus pattern (63 bp):
TAATTTTGATAACTTTAGATAAAATTTTGGTAACTTATAATATAATTTTGGTAACCTTCGATA
Found at i:8199515 original size:63 final size:63
Alignment explanation
Indices: 8199337--8199535 Score: 201
Period size: 63 Copynumber: 3.1 Consensus size: 63
8199327 AAATTTTAAT
* * * *
8199337 TTTGA-TAACTTTTGATAAAATTTTTGGTAACTTATAATATAATTTTGGCAACCTTCGATATAA
1 TTTGAGTAACTTTAGATACAA-TTTTGGTAACTTATAATATAATTTTGGTAACTTTCGATATAA
* * * *
8199400 TTTTAGTAACTTTCGATACAATTTTGGTAACTTATAATATAATTTTGATAACTTTCGATATTAG
1 TTTGAGTAACTTTAGATACAATTTTGGTAACTTATAATATAATTTTGGTAACTTTCGATA-TAA
* * *
8199464 TTTGA-TAA-TTTAGAATATAATTTTGGTAAC-TATTAATA-AGATTTTGGTAACTTCTTGATGT
1 TTTGAGTAACTTTAG-ATACAATTTTGGTAACTTA-TAATATA-ATTTTGGTAACTT-TCGATAT
8199525 AA
62 AA
*
8199527 TTTTAGTAA
1 TTTGAGTAA
8199536 TTAATCTTTT
Statistics
Matches: 114, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
62 7 0.06
63 81 0.71
64 26 0.23
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (63 bp):
TTTGAGTAACTTTAGATACAATTTTGGTAACTTATAATATAATTTTGGTAACTTTCGATATAA
Found at i:8200187 original size:16 final size:17
Alignment explanation
Indices: 8200154--8200188 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8200144 GGACTTTTTT
*
8200154 AGTCTAATTATAAAAAA
1 AGTCTAATAATAAAAAA
8200171 AGTCTAATAATAAAAAA
1 AGTCTAATAATAAAAAA
8200188 A
1 A
8200189 TTAGTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26
Consensus pattern (17 bp):
AGTCTAATAATAAAAAA
Found at i:8202088 original size:16 final size:16
Alignment explanation
Indices: 8202067--8202098 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8202057 TGTTGTTATT
*
8202067 AGTCTAATCATAAAAA
1 AGTCTAATAATAAAAA
8202083 AGTCTAATAATAAAAA
1 AGTCTAATAATAAAAA
8202099 TTTTTCATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.25
Consensus pattern (16 bp):
AGTCTAATAATAAAAA
Found at i:8207899 original size:2 final size:2
Alignment explanation
Indices: 8207894--8207926 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
8207884 ATGTGTGTCA
8207894 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8207927 TTGATTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:8213251 original size:28 final size:28
Alignment explanation
Indices: 8213219--8213336 Score: 105
Period size: 28 Copynumber: 4.1 Consensus size: 28
8213209 TAAATTATAA
* *
8213219 TAAAATATATAATATGATATTTGAATTT
1 TAAAATATTTAATATGATATTTAAATTT
* *
8213247 TAAAATTTTTAATATAATATTTAAATTAT
1 TAAAATATTTAATATGATATTTAAATT-T
* *
8213276 AATAAAAAATTTAATGTGATA-TTAAATTT
1 --TAAAATATTTAATATGATATTTAAATTT
* * *
8213305 TAAAATTTTTAATAT-ATTATTTGAATTA
1 TAAAATATTTAATATGA-TATTTAAATTT
8213333 TAAA
1 TAAA
8213337 TTTATTAATT
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
26 1 0.01
27 14 0.19
28 33 0.46
29 2 0.03
30 7 0.10
31 15 0.21
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.47
Consensus pattern (28 bp):
TAAAATATTTAATATGATATTTAAATTT
Found at i:8213326 original size:58 final size:59
Alignment explanation
Indices: 8213203--8213335 Score: 198
Period size: 58 Copynumber: 2.3 Consensus size: 59
8213193 TTTGATGAAT
* *
8213203 TAAT-TTTAAATTATAATAAAATATATAATATGATATTTGAATTTTAAAATTTTTAATA
1 TAATATTTAAATTATAATAAAAAATATAATATGATATTTAAATTTTAAAATTTTTAATA
* *
8213261 TAATATTTAAATTATAATAAAAAATTTAATGTGATA-TTAAATTTTAAAATTTTTAATA
1 TAATATTTAAATTATAATAAAAAATATAATATGATATTTAAATTTTAAAATTTTTAATA
* *
8213319 TATTATTTGAATTATAA
1 TAATATTTAAATTATAA
8213336 ATTTATTAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 40 0.59
59 28 0.41
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (59 bp):
TAATATTTAAATTATAATAAAAAATATAATATGATATTTAAATTTTAAAATTTTTAATA
Found at i:8218461 original size:12 final size:13
Alignment explanation
Indices: 8218438--8218484 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
8218428 AACTTTGCAC
*
8218438 CTTCTTTTTCTTT
1 CTTCTCTTTCTTT
8218451 CTT-TCTTTCTTT
1 CTTCTCTTTCTTT
*
8218463 CTTCTCTTCCCTTT
1 CTTCTCTT-TCTTT
8218477 CTCTCTCT
1 CT-TCTCT
8218485 CTGGTACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 11 0.38
13 7 0.24
14 6 0.21
15 5 0.17
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (13 bp):
CTTCTCTTTCTTT
Found at i:8239287 original size:148 final size:150
Alignment explanation
Indices: 8239015--8239316 Score: 394
Period size: 148 Copynumber: 2.0 Consensus size: 150
8239005 AAGTTAAAAG
* * *
8239015 CAGAGTTCTAAAAGGAGAAAATCTAATATATTTTCTTCAATACTGCTGAAAGTCCTTTATGCATG
1 CAGAGTGCTAAAAGGACAAAATCTAATATATTTTCTTCAATACTGCTGAAAG--CTTTATGCATA
* * * * ** *
8239080 CATGAGAAATAAATGCAAAGACCAAAGATCCATAGTAAGTTGAAATTGAAACAACAAATCTTAGA
64 CAAGAGAAATAAATGAAAAGACCAAAGATCCACAATAAGTTGAAACCGAAACAACAAATCTTAAA
* *
8239145 CAACCACAATATTTCCATTATA
129 CAACCACAAGATTTCCATCATA
* *
8239167 CAGAGTGCTAAAATGACAAAATCTAA-A-ATTTTGCTTCAATACTGCTGAAAG-TTTGTGCATAC
1 CAGAGTGCTAAAAGGACAAAATCTAATATATTTT-CTTCAATACTGCTGAAAGCTTTATGCATAC
* * * *
8239229 AAGAGAAATATATGAAAAGTCCAAAGATCCACAATAAGTTGAAACCGGAACACCAAATCTTAAAC
65 AAGAGAAATAAATGAAAAGACCAAAGATCCACAATAAGTTGAAACCGAAACAACAAATCTTAAAC
8239294 AACCACAAGATTTCCATCATA
130 AACCACAAGATTTCCATCATA
8239315 CA
1 CA
8239317 AACTCAAAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
148 84 0.64
150 5 0.04
151 19 0.15
152 23 0.18
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.25
Consensus pattern (150 bp):
CAGAGTGCTAAAAGGACAAAATCTAATATATTTTCTTCAATACTGCTGAAAGCTTTATGCATACA
AGAGAAATAAATGAAAAGACCAAAGATCCACAATAAGTTGAAACCGAAACAACAAATCTTAAACA
ACCACAAGATTTCCATCATA
Found at i:8245867 original size:23 final size:23
Alignment explanation
Indices: 8245841--8245909 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 23
8245831 ATTATATTAA
**
8245841 AATTTATATGTAATAAAATTTTT
1 AATTTATAAATAATAAAATTTTT
*
8245864 AATTTATAAATAATAATATTTTT
1 AATTTATAAATAATAAAATTTTT
8245887 AATTATTAATATAATAATAAAAT
1 AA-T-TT-ATA-AATAATAAAAT
8245910 GTATTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 22 0.58
24 1 0.03
25 2 0.05
26 3 0.08
27 10 0.26
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (23 bp):
AATTTATAAATAATAAAATTTTT
Found at i:8245958 original size:18 final size:17
Alignment explanation
Indices: 8245900--8245961 Score: 54
Period size: 18 Copynumber: 3.6 Consensus size: 17
8245890 TATTAATATA
*
8245900 ATAATAAAATGTATTAT
1 ATAATAAAATTTATTAT
* * *
8245917 TTTAT-TAATTTATTAT
1 ATAATAAAATTTATTAT
*
8245933 ATAATAAAATTTACTTTT
1 ATAATAAAATTTA-TTAT
*
8245951 ATATTAAAATT
1 ATAATAAAATT
8245962 AAAATTTTTA
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
16 12 0.35
17 9 0.26
18 13 0.38
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATAATAAAATTTATTAT
Found at i:8247545 original size:12 final size:12
Alignment explanation
Indices: 8247530--8247577 Score: 52
Period size: 11 Copynumber: 4.4 Consensus size: 12
8247520 TTTTGAAATT
8247530 TATTTTTATATA
1 TATTTTTATATA
8247542 TA--TTTATAT-
1 TATTTTTATATA
*
8247551 TATTTTAATATA
1 TATTTTTATATA
8247563 -ATTTTTA-ATA
1 TATTTTTATATA
8247573 TATTT
1 TATTT
8247578 AAATAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
9 2 0.07
10 10 0.33
11 16 0.53
12 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTTTTATATA
Found at i:8247592 original size:20 final size:21
Alignment explanation
Indices: 8247537--8247594 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
8247527 ATTTATTTTT
* *
8247537 ATATATATTTATAT-TATTTTA
1 ATATAAATTTAAATATA-TTTA
* *
8247558 ATATAATTTTTAATATATTTA
1 ATATAAATTTAAATATATTTA
8247579 A-ATAAATTTAAATATA
1 ATATAAATTTAAATATA
8247595 AAATAATTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 13 0.43
21 15 0.50
22 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATATAAATTTAAATATATTTA
Found at i:8248822 original size:20 final size:19
Alignment explanation
Indices: 8248757--8248822 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
8248747 ATAATATTTT
*
8248757 ATTGATAAATTATTTATAA
1 ATTGATAAATTTTTTATAA
* *
8248776 ATTTAAAAATTTTTTA-AA
1 ATTGATAAATTTTTTATAA
*
8248794 AATGCATAAATCTTTTTATAA
1 ATTG-ATAAAT-TTTTTATAA
8248815 ATTGATAA
1 ATTGATAA
8248823 CTTGCTCTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
18 4 0.11
19 18 0.49
20 10 0.27
21 5 0.14
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (19 bp):
ATTGATAAATTTTTTATAA
Found at i:8249467 original size:21 final size:22
Alignment explanation
Indices: 8249425--8249467 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
8249415 GTTTATTATA
*
8249425 AATTGAATTTAGAATATAATTT
1 AATTGAATTTAGAAAATAATTT
* *
8249447 AATT-AATTTATAAAATTATTT
1 AATTGAATTTAGAAAATAATTT
8249468 TTAAATTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
AATTGAATTTAGAAAATAATTT
Found at i:8255319 original size:151 final size:151
Alignment explanation
Indices: 8255045--8255337 Score: 451
Period size: 151 Copynumber: 1.9 Consensus size: 151
8255035 TTTTCCTCTT
* *
8255045 TTTTCTCCCCTTATCTTTCCAGTTCCTAATCCTAAACGTAGGAAAGTTGATATTGGATCTCGTAA
1 TTTTCTCCCCTTATCTTTCCAGTTCCTAATCCTAAACGTAGGAAAGTTGATATTGAATCTCATAA
* **
8255110 GAAGCTTCATAATGATTAAGGGTACAGATTCAATAATATACACCTGCATTACAAACATTTTAATG
66 GAAGCTTCATAATAATTAAGGGTACAGATTCAATAATATACACCTGCATTACAAACATTAGAATG
8255175 AAATTCAGCTGATATTGAATC
131 AAATTCAGCTGATATTGAATC
* *
8255196 TTTTCTCCCCTTATCTTTCCAGTTCCTAATCCTAGATGTAGGAAAGTTGATATTGAATCTCATAA
1 TTTTCTCCCCTTATCTTTCCAGTTCCTAATCCTAAACGTAGGAAAGTTGATATTGAATCTCATAA
** ** ** *
8255261 GAAGCTTCATAATAATTAAGGGTACAGATTTGATGGTATATGCCTGCATTATAAACATTAGAATG
66 GAAGCTTCATAATAATTAAGGGTACAGATTCAATAATATACACCTGCATTACAAACATTAGAATG
*
8255326 AAATTCATCTGA
131 AAATTCAGCTGA
8255338 AAGATATTTT
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 127 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (151 bp):
TTTTCTCCCCTTATCTTTCCAGTTCCTAATCCTAAACGTAGGAAAGTTGATATTGAATCTCATAA
GAAGCTTCATAATAATTAAGGGTACAGATTCAATAATATACACCTGCATTACAAACATTAGAATG
AAATTCAGCTGATATTGAATC
Found at i:8258719 original size:26 final size:28
Alignment explanation
Indices: 8258690--8258747 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
8258680 AATCTTTATT
8258690 ATTTAAGTTTA-A-ATTAAAAATTAAAA
1 ATTTAAGTTTACATATTAAAAATTAAAA
* *
8258716 ATTT-ATTTTACATATTAAAATTTAAAA
1 ATTTAAGTTTACATATTAAAAATTAAAA
8258743 ATTTA
1 ATTTA
8258748 TTTGAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 5 0.19
26 5 0.19
27 17 0.63
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (28 bp):
ATTTAAGTTTACATATTAAAAATTAAAA
Found at i:8258774 original size:29 final size:27
Alignment explanation
Indices: 8258699--8258786 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
8258689 TATTTAAGTT
* *
8258699 TAAATTAAAAATTAAAAATTTATTTTA
1 TAAAATAAAAATTAAAAATTTATTTAA
* * * *
8258726 CATATTAAAATTTAAAAATTTATTTGAA
1 TAAAATAAAAATTAAAAATTTATTT-AA
8258754 TAAAATAAAAATATAAAAATTTATTTAAA
1 TAAAATAAAAAT-TAAAAATTTATTT-AA
8258783 TAAA
1 TAAA
8258787 GTATTAAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 22 0.44
28 9 0.18
29 19 0.38
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (27 bp):
TAAAATAAAAATTAAAAATTTATTTAA
Found at i:8259650 original size:11 final size:11
Alignment explanation
Indices: 8259636--8259679 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
8259626 TGTTATATTT
8259636 ATATAATATAA
1 ATATAATATAA
8259647 ATATAATATAA
1 ATATAATATAA
8259658 ATATAAAATATAA
1 ATAT--AATATAA
*
8259671 AAATAATAT
1 ATATAATAT
8259680 TATTTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 20 0.67
13 10 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATATAATATAA
Found at i:8259656 original size:24 final size:24
Alignment explanation
Indices: 8259629--8259685 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
8259619 TAAAATATGT
* *
8259629 TATATTTATATAATATAAATATAA
1 TATATTTATAAAATATAAAAATAA
**
8259653 TATAAATATAAAATATAAAAATAA
1 TATATTTATAAAATATAAAAATAA
8259677 TATTATTTA
1 TA-TATTTA
8259686 AAATTTTAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
TATATTTATAAAATATAAAAATAA
Found at i:8259699 original size:24 final size:24
Alignment explanation
Indices: 8259661--8259724 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 24
8259651 AATATAAATA
* *
8259661 TAAAATATAAAAATAATATTAT-T
1 TAAAATTTAATAATAATATTATCT
8259684 TAAAATTT--TAATAATAATTATCT
1 TAAAATTTAATAATAAT-ATTATCT
*
8259707 TTAAATTTAATAA-AATAT
1 TAAAATTTAATAATAATAT
8259725 AAAATTATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
21 6 0.18
22 5 0.15
23 17 0.50
24 3 0.09
25 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
TAAAATTTAATAATAATATTATCT
Found at i:8259715 original size:22 final size:21
Alignment explanation
Indices: 8259672--8259719 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
8259662 AAAATATAAA
8259672 AATAATATTATTTAAAATTTT
1 AATAATATTATTTAAAATTTT
*
8259693 AATAATAATTATCTTTAAA-TTT
1 AATAAT-ATTAT-TTAAAATTTT
8259715 AATAA
1 AATAA
8259720 AATATAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 6 0.25
22 13 0.54
23 5 0.21
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AATAATATTATTTAAAATTTT
Found at i:8259791 original size:24 final size:24
Alignment explanation
Indices: 8259745--8259791 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8259735 TTTATATTTT
** *
8259745 TATTTTGATATAAGTTATGATATG
1 TATTTTGATATAAAATATAATATG
*
8259769 TATTTTTATATAAAATATAATAT
1 TATTTTGATATAAAATATAATAT
8259792 AAATATATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (24 bp):
TATTTTGATATAAAATATAATATG
Found at i:8264012 original size:2 final size:2
Alignment explanation
Indices: 8264005--8264036 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8263995 TGTGCATAGG
8264005 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8264037 CACATAACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8269529 original size:82 final size:82
Alignment explanation
Indices: 8269326--8269512 Score: 277
Period size: 82 Copynumber: 2.3 Consensus size: 82
8269316 GAGAATTCTT
* *
8269326 AAACAACTTACCAAATTTATTGTGGTCTGCATGCTTTTCCCTTTCATATACATATGTAGGTGTTT
1 AAACAACTTACCAAATTTATTGTGGTCTGCATACTTTTCCCTTTCACATACATATGTAGGTGTTT
* *
8269391 TGCAAAATATGAAGAGA
66 AGCAAAATATGAAAAGA
**
8269408 AAACAACTTACCAAATTTATTGTGGTCTGCATACTTTTCCCTTTCACATAGGTATGTAGGTGTTT
1 AAACAACTTACCAAATTTATTGTGGTCTGCATACTTTTCCCTTTCACATACATATGTAGGTGTTT
*
8269473 AGC-AAATGGTGAAAAGA
66 AGCAAAAT-ATGAAAAGA
**
8269490 AAACAGTTTACCAAATTTATTGT
1 AAACAACTTACCAAATTTATTGT
8269513 TATCCGCTTA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 4 0.04
82 91 0.96
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (82 bp):
AAACAACTTACCAAATTTATTGTGGTCTGCATACTTTTCCCTTTCACATACATATGTAGGTGTTT
AGCAAAATATGAAAAGA
Found at i:8269573 original size:82 final size:82
Alignment explanation
Indices: 8269326--8269573 Score: 228
Period size: 82 Copynumber: 3.0 Consensus size: 82
8269316 GAGAATTCTT
* * ** * ** * *
8269326 AAACAACTTACCAAATTTATTGTGGTCTGCATGCTTTTCCCTTTCATATACATATGTAGGTGTTT
1 AAACAACTTACCAAATTTATTGTGATCCGCATAATTTTCCCTTTCACATAGGTATATAGGTGCTT
** *
8269391 TGCAAAATATGAAGAGA
66 ACCAAAATGTGAAGAGA
* * * * *
8269408 AAACAACTTACCAAATTTATTGTGGTCTGCATACTTTTCCCTTTCACATAGGTATGTAGGTGTTT
1 AAACAACTTACCAAATTTATTGTGATCCGCATAATTTTCCCTTTCACATAGGTATATAGGTGCTT
* *
8269473 AGC-AAATGGTGAAAAGA
66 ACCAAAAT-GTGAAGAGA
** * * * ***
8269490 AAACAGTTTACCAAATTTATTGTTATCCGCTTAATTTTCCTTTTTGTATAGGTATATAGGTGCTT
1 AAACAACTTACCAAATTTATTGTGATCCGCATAATTTTCCCTTTCACATAGGTATATAGGTGCTT
*
8269555 ACCAAAATGTTAAGAGA
66 ACCAAAATGTGAAGAGA
8269572 AA
1 AA
8269574 TTTTATTGAT
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
81 4 0.03
82 133 0.94
83 4 0.03
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (82 bp):
AAACAACTTACCAAATTTATTGTGATCCGCATAATTTTCCCTTTCACATAGGTATATAGGTGCTT
ACCAAAATGTGAAGAGA
Found at i:8275072 original size:2 final size:2
Alignment explanation
Indices: 8275060--8275098 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
8275050 AATGTAAGAC
8275060 CT CT C- CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8275099 AATCCTATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:8275569 original size:30 final size:28
Alignment explanation
Indices: 8275533--8275590 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
8275523 ATCATCTCTT
*
8275533 AAACTTAAATTTGTGTTTTTTGGCCCAAAA
1 AAACTTAAATTTG-G-GTTTTGGCCCAAAA
*
8275563 AAACTTAGATTTGGGTTTTGGCCCAAAA
1 AAACTTAAATTTGGGTTTTGGCCCAAAA
8275591 TAAGCCCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 13 0.50
29 1 0.04
30 12 0.46
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (28 bp):
AAACTTAAATTTGGGTTTTGGCCCAAAA
Found at i:8277594 original size:5 final size:5
Alignment explanation
Indices: 8277575--8277608 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
8277565 CAAATCTTAA
8277575 TTTCTT TTTCTT TTTCT TTTCT TTTCT TTTCT TT
1 TTTC-T TTTC-T TTTCT TTTCT TTTCT TTTCT TT
8277609 GCCTCTTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 18 0.64
6 10 0.36
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:8277718 original size:2 final size:2
Alignment explanation
Indices: 8277711--8277759 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
8277701 CTCCACCTGC
8277711 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -T
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8277752 C- CT CT CT C
1 CT CT CT CT C
8277760 GCAATCCTCC
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 43 0.96
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Done.