Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 24 of 113
Found at i:8282953 original size:2 final size:2
Alignment explanation
Indices: 8282946--8282972 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8282936 GAAGAGTTAA
8282946 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8282973 AAGGTTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8283183 original size:2 final size:2
Alignment explanation
Indices: 8283176--8283202 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8283166 ACATTTTGTA
8283176 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8283203 AAAGGTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8292169 original size:19 final size:17
Alignment explanation
Indices: 8292136--8292170 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
8292126 TTGCCTCTAT
8292136 TATTAATAAAAATAAAC
1 TATTAATAAAAATAAAC
8292153 TATTGAATAACAAATAAA
1 TATT-AATAA-AAATAAA
8292171 AAAATTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (17 bp):
TATTAATAAAAATAAAC
Found at i:8298459 original size:11 final size:12
Alignment explanation
Indices: 8298436--8298470 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
8298426 TTTTAGAGAA
8298436 AAAAAGTTTTTTT
1 AAAAA-TTTTTTT
8298449 AAAAATTTTTTT
1 AAAAATTTTTTT
*
8298461 GAAAATTTTT
1 AAAAATTTTT
8298471 AGTTTTCAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (12 bp):
AAAAATTTTTTT
Found at i:8298973 original size:4 final size:4
Alignment explanation
Indices: 8298964--8298999 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
8298954 GTTTTGATAT
*
8298964 TTTA TTTA TTTA TTTA TTTA GTTA TTATA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTT
8299000 TGTAAGTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:8299117 original size:25 final size:25
Alignment explanation
Indices: 8299073--8299120 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
8299063 TTAATTATCC
8299073 AATGATGAAAATTTTAAAAATTTTA
1 AATGATGAAAATTTTAAAAATTTTA
*
8299098 AATGAT-AAATTTTTATAAAATTT
1 AATGATGAAAATTTTA-AAAATTT
8299121 CTAGGTGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (25 bp):
AATGATGAAAATTTTAAAAATTTTA
Found at i:8299956 original size:175 final size:175
Alignment explanation
Indices: 8299761--8300109 Score: 601
Period size: 175 Copynumber: 2.0 Consensus size: 175
8299751 AAATATTTTC
*
8299761 AAGAAAACAAATGGGATTCTTGAATACTCTTGAAGTGAGAGAATATTTTTAAGGGTTCTACCAGA
1 AAGAAAACAAATGGGATTCTTGAATACTCTTGAAGTGAGAGAATATTTTTAAGGGTTATACCAGA
* *
8299826 TTGATGAAAGAATCTTAAAAATTATTTTCAATATTTAATATAAAAATTAAAATCATTAGAATCAA
66 TTGATGAAAGAATCTTAAAAATTATTTTCAATATTCAATATAAAAATTAAAACCATTAGAATCAA
*
8299891 GATCTTAGCATAAATTTAAAATAAAATGATACCA-TCTTTTGGATT
131 GATCTTAGCATAAATCTAAAATAAAATGATACCATTC-TTTGGATT
* *
8299936 AAGAAAACAAATGGGATTCTTGAATACTCTTGAGGTGAGAGAATATTTTTAAGGGTTATATCAGA
1 AAGAAAACAAATGGGATTCTTGAATACTCTTGAAGTGAGAGAATATTTTTAAGGGTTATACCAGA
*
8300001 TTGATGAAAGAATCTTAAAAATTATTTTCAATATTCAATATAAAAATTAAAACCATTAGAGTCAA
66 TTGATGAAAGAATCTTAAAAATTATTTTCAATATTCAATATAAAAATTAAAACCATTAGAATCAA
* *
8300066 GATCTTAGTATAAATCTAAAATAAAATGTTACCATTCTTTGGAT
131 GATCTTAGCATAAATCTAAAATAAAATGATACCATTCTTTGGAT
8300110 AGTCATATGG
Statistics
Matches: 164, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
175 162 0.99
176 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (175 bp):
AAGAAAACAAATGGGATTCTTGAATACTCTTGAAGTGAGAGAATATTTTTAAGGGTTATACCAGA
TTGATGAAAGAATCTTAAAAATTATTTTCAATATTCAATATAAAAATTAAAACCATTAGAATCAA
GATCTTAGCATAAATCTAAAATAAAATGATACCATTCTTTGGATT
Found at i:8303473 original size:2 final size:2
Alignment explanation
Indices: 8303466--8303519 Score: 72
Period size: 2 Copynumber: 27.0 Consensus size: 2
8303456 ACCCCAAAAG
* * * *
8303466 AT AT AT AT AT AT AT AT AT AT AT AT AC AC AT AC AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8303508 AT AT AT AT AT AT
1 AT AT AT AT AT AT
8303520 TGAGAGAGAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:8304005 original size:29 final size:29
Alignment explanation
Indices: 8303963--8304028 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
8303953 TTGATCGTTG
* * *
8303963 TTTTTGCCACTTGCTTTGTTACCATTAAC
1 TTTTTGCTACTTGCTCTGCTACCATTAAC
*
8303992 TTTTTGCTACTTGCTCTGCTACTATTAAC
1 TTTTTGCTACTTGCTCTGCTACCATTAAC
8304021 TTTTTGCT
1 TTTTTGCT
8304029 TCCTCAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.15, C:0.23, G:0.11, T:0.52
Consensus pattern (29 bp):
TTTTTGCTACTTGCTCTGCTACCATTAAC
Found at i:8304651 original size:3 final size:3
Alignment explanation
Indices: 8304643--8304670 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8304633 TCGACCAATA
8304643 ACG ACG ACG ACG ACG ACG ACG ACG ACG A
1 ACG ACG ACG ACG ACG ACG ACG ACG ACG A
8304671 GGAGGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.32, T:0.00
Consensus pattern (3 bp):
ACG
Found at i:8312387 original size:12 final size:13
Alignment explanation
Indices: 8312367--8312404 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
8312357 GTTAAGGCAG
*
8312367 AAAATTTAAGAAA
1 AAAATTAAAGAAA
8312380 AAAATTAAAGAAA
1 AAAATTAAAGAAA
8312393 AAAA--AAAGAAA
1 AAAATTAAAGAAA
8312404 A
1 A
8312405 TGTAAATGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 8 0.33
13 16 0.67
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (13 bp):
AAAATTAAAGAAA
Found at i:8314195 original size:42 final size:42
Alignment explanation
Indices: 8314129--8314232 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 42
8314119 CAAAATCGGA
* * * *
8314129 TAAAGATTATTAAAATTATGTC-AAATATTATTAGAGTTTTAT
1 TAAAGATTATCAAAATTATATCAAAAT-TTATTAAAATTTTAT
* * *
8314171 TAAATATTATCAACATTATATCAAAATTTTTTAAAATTTTAT
1 TAAAGATTATCAAAATTATATCAAAATTTATTAAAATTTTAT
* *
8314213 TAAAGATTAACAATATTATA
1 TAAAGATTATCAAAATTATA
8314233 AAAAGGTTTC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 47 0.92
43 4 0.08
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (42 bp):
TAAAGATTATCAAAATTATATCAAAATTTATTAAAATTTTAT
Found at i:8314591 original size:19 final size:21
Alignment explanation
Indices: 8314555--8314595 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
8314545 TTGTATATGG
8314555 ATTTGATTTAATTTATATTAT
1 ATTTGATTTAATTTATATTAT
8314576 ATTTG-TTTAA-TTATATTAT
1 ATTTGATTTAATTTATATTAT
8314595 A
1 A
8314596 ATTTAGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 5 0.25
21 5 0.25
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (21 bp):
ATTTGATTTAATTTATATTAT
Found at i:8314680 original size:24 final size:26
Alignment explanation
Indices: 8314635--8314683 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
8314625 ATAATATATG
8314635 AATTTTTTATTAAAAAATAAAATTAT
1 AATTTTTTATTAAAAAATAAAATTAT
*
8314661 AATTTTTTA-TAAATAA-AAAATTA
1 AATTTTTTATTAAAAAATAAAATTA
8314684 AGAAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 6 0.27
26 9 0.41
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
AATTTTTTATTAAAAAATAAAATTAT
Found at i:8321258 original size:22 final size:22
Alignment explanation
Indices: 8321233--8321276 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8321223 ATTTTTTGTT
*
8321233 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGACACAAATA
8321255 CTTAATTCTAGAGACACAAATA
1 CTTAATTCTAGAGACACAAATA
8321277 TAAATACCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (22 bp):
CTTAATTCTAGAGACACAAATA
Found at i:8325448 original size:22 final size:22
Alignment explanation
Indices: 8325423--8325466 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8325413 ATTTTTTGTC
*
8325423 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
8325445 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
8325467 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:8332866 original size:2 final size:2
Alignment explanation
Indices: 8332859--8332896 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8332849 TGTTACATGT
8332859 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8332897 GGCATATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8335831 original size:2 final size:2
Alignment explanation
Indices: 8335824--8335850 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8335814 AATATCTAAC
8335824 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8335851 ACCTGATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8339178 original size:36 final size:36
Alignment explanation
Indices: 8339126--8339197 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
8339116 CTTGTAAAAA
*
8339126 AACTTCTGTAAGGAGTATAAAAAGATTGATTGCTAG
1 AACTTCTGTAAAGAGTATAAAAAGATTGATTGCTAG
8339162 AACTTCTGTAAAGAGTATAAAAAGATTGATTGCTAG
1 AACTTCTGTAAAGAGTATAAAAAGATTGATTGCTAG
8339198 TTATACTTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (36 bp):
AACTTCTGTAAAGAGTATAAAAAGATTGATTGCTAG
Found at i:8341695 original size:19 final size:19
Alignment explanation
Indices: 8341671--8341709 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8341661 GCACATGCCA
*
8341671 AAAATT-TCATAGGATTGGG
1 AAAATTATCAT-GAATTGGG
8341690 AAAATTATCATGAATTGGG
1 AAAATTATCATGAATTGGG
8341709 A
1 A
8341710 TGAGAATCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (19 bp):
AAAATTATCATGAATTGGG
Found at i:8343611 original size:2 final size:2
Alignment explanation
Indices: 8343604--8343641 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8343594 CATACAATAC
8343604 AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8343642 GTTGATGGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8344714 original size:2 final size:2
Alignment explanation
Indices: 8344707--8344735 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8344697 TGAAGCTTCT
8344707 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8344736 TTTTCCCCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8347349 original size:16 final size:18
Alignment explanation
Indices: 8347315--8347349 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8347305 AGAAATTTTC
*
8347315 AAATATAATTTTATAAAA
1 AAATATAATTTAATAAAA
8347333 AAAT-TAATTTAATAAAA
1 AAATATAATTTAATAAAA
8347350 TATTTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:8347625 original size:18 final size:19
Alignment explanation
Indices: 8347602--8347642 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
8347592 AATCGAATTA
*
8347602 TATATATTTTTT-AGTTTT
1 TATATATTTTTTAAATTTT
8347620 TATATATTTTTTAAATTTT
1 TATATATTTTTTAAATTTT
8347639 TATA
1 TATA
8347643 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TATATATTTTTTAAATTTT
Found at i:8347699 original size:13 final size:13
Alignment explanation
Indices: 8347680--8347719 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
8347670 ATATACATAA
8347680 ATATATTAAAATT
1 ATATATTAAAATT
* *
8347693 TTATATTAAAATA
1 ATATATTAAAATT
*
8347706 ATATATCAAAATT
1 ATATATTAAAATT
8347719 A
1 A
8347720 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (13 bp):
ATATATTAAAATT
Found at i:8352851 original size:17 final size:17
Alignment explanation
Indices: 8352825--8352858 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8352815 TTTTTGGTTG
* *
8352825 AGTTTTGAGGGTTTTAA
1 AGTTTAGAGGGTCTTAA
8352842 AGTTTAGAGGGTCTTAA
1 AGTTTAGAGGGTCTTAA
8352859 GGCTTGGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (17 bp):
AGTTTAGAGGGTCTTAA
Found at i:8352966 original size:28 final size:28
Alignment explanation
Indices: 8352891--8352982 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
8352881 AGGTTTATGA
* *
8352891 TTTTGATTTTAGAGTTTGGAGATTTTAGGG
1 TTTTGATTTAAGAGTTT-GAG-TTTTGGGG
* *
8352921 TTTTGGTTTTAA-AATTTGAGTTTTGGGG
1 TTTT-GATTTAAGAGTTTGAGTTTTGGGG
* * *
8352949 TTTTGATTTAAGGGTTTGAATTTTAGGGA
1 TTTTGATTTAAGAGTTTGAGTTTT-GGGG
8352978 TTTTG
1 TTTTG
8352983 GGTTTTGGGG
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
27 6 0.12
28 20 0.40
29 11 0.22
30 8 0.16
31 5 0.10
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (28 bp):
TTTTGATTTAAGAGTTTGAGTTTTGGGG
Found at i:8352976 original size:14 final size:15
Alignment explanation
Indices: 8352866--8352982 Score: 55
Period size: 14 Copynumber: 7.9 Consensus size: 15
8352856 TAAGGCTTGG
*
8352866 ATTTTAGGGTATTGA
1 ATTTTAGGGTTTTGA
* * *
8352881 AGGTTTATGATTTTG-
1 A-TTTTAGGGTTTTGA
* *
8352896 ATTTTAGAGTTTGGA
1 ATTTTAGGGTTTTGA
8352911 GATTTTAGGGTTTTG-
1 -ATTTTAGGGTTTTGA
* ***
8352926 GTTTTA-AAATTTGA
1 ATTTTAGGGTTTTGA
* *
8352940 GTTTTGGGGTTTTG-
1 ATTTTAGGGTTTTGA
*
8352954 ATTTAAGGG-TTTGA
1 ATTTTAGGGTTTTGA
8352968 ATTTTAGGGATTTTG
1 ATTTTAGGG-TTTTG
8352983 GGTTTTGGGG
Statistics
Matches: 71, Mismatches: 23, Indels: 15
0.65 0.21 0.14
Matches are distributed among these distances:
13 8 0.11
14 32 0.45
15 6 0.08
16 25 0.35
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.50
Consensus pattern (15 bp):
ATTTTAGGGTTTTGA
Found at i:8353327 original size:21 final size:21
Alignment explanation
Indices: 8353284--8353340 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
8353274 AAAATTATTC
* *
8353284 TTATTATAATTTTTTAGATTA
1 TTATTATTATTTTTTAGAGTA
8353305 TTATTATTATTATTTTA-AGTA
1 TTATTATTATT-TTTTAGAGTA
* *
8353326 TTTTTAATATTTTTT
1 TTATTATTATTTTTT
8353341 TATTAGTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 4 0.13
21 22 0.71
22 5 0.16
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (21 bp):
TTATTATTATTTTTTAGAGTA
Found at i:8356073 original size:333 final size:331
Alignment explanation
Indices: 8355451--8356085 Score: 853
Period size: 333 Copynumber: 1.9 Consensus size: 331
8355441 ATCTATTAAT
* * **
8355451 ACTTCCATCTGCATTATACTTGATAGCAAAAATTCATTTACACCCAATTAGATTTTTTTTTTGGG
1 ACTTCCATCTGCATTATACTTAATAGCAAAAATTCATTTACACCCAACTAGATTTTTTTTTTGAA
* *
8355516 TAGTTTGAAATTTTCCATGTTTTGTTTTTTTCTAGGGACTTAATTTCTTCCAAAATAGCCATCTT
66 TAGTCTGAAATTTTCCATGTTTTGCTTTTTTCTAGGGACTTAATTTCTTCCAAAATAGCCATCTT
* ** *
8355581 CCATTTTAGTTACATGAGTGCGTCATGAATATTATTAAAAATATGTATATTGTTTAGTGTGGTAA
131 CCATTTTAGTTACATGACTGCGTCATGAATATTATTAAAAATATACATATTGTTTAGTGTGGCAA
** *
8355646 CAAAAGCCTGATAACTGGGTGATAAACCTTCATAAGAAAGTACATTACAAATTGGGTGTTGAATA
196 CAAAAGCCTGATAACTGGGTGATAAACCTTCATAAGAAACCACATTACAAATTGAGTGTTGAATA
* *
8355711 CACGATTTCACACTTTTCCCTAAAGCAATCGGTTGATCAAGATCATTAAAAAATTCAATTGAATC
261 CACGATCTCACACTTTTCCCTAAAGCAATCAGTTGATCAAGATCATTAAAAAATTCAATTGAATC
8355776 AAATTC
326 AAATTC
* * * *
8355782 ACTTCCATTTGCATTATGCTTAATAGTAAAAATTCATTTGCACCCAACTAGATTTTTCTTTTTGA
1 ACTTCCATCTGCATTATACTTAATAGCAAAAATTCATTTACACCCAACTAGATTTTT-TTTTTGA
** * *
8355847 ATAGTCCTGAAATATTT-CATGTTTTGCTTTTTTCTAGGGTTTTGATTTCTTCCATAATAGCCAT
65 ATAGT-CTGAAAT-TTTCCATGTTTTGCTTTTTTCTAGGGACTTAATTTCTTCCAAAATAGCCAT
* * * * * *
8355911 CTTTCATTTTGGTTGCATGACTGCTTCATGAATATTATTGAAAATCTACATATTGTTTAGTGTGG
128 CTTCCATTTTAGTTACATGACTGCGTCATGAATATTATTAAAAATATACATATTGTTTAGTGTGG
* * * * * *
8355976 CAACAAAAGTC-GAATAATTTGGTGATAAACTTTTATAAGAAACCATATTACAAATTGAGTGTTG
193 CAACAAAAGCCTG-ATAACTGGGTGATAAACCTTCATAAGAAACCACATTACAAATTGAGTGTTG
* * * *
8356040 AATACATGATCTCATA-TATTTCCTTAGAGCAATCAGTTGATCAAGA
257 AATACACGATCTCACACT-TTTCCCTAAAGCAATCAGTTGATCAAGA
8356086 ATTGAATTAT
Statistics
Matches: 260, Mismatches: 39, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
331 51 0.20
332 12 0.05
333 194 0.75
334 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (331 bp):
ACTTCCATCTGCATTATACTTAATAGCAAAAATTCATTTACACCCAACTAGATTTTTTTTTTGAA
TAGTCTGAAATTTTCCATGTTTTGCTTTTTTCTAGGGACTTAATTTCTTCCAAAATAGCCATCTT
CCATTTTAGTTACATGACTGCGTCATGAATATTATTAAAAATATACATATTGTTTAGTGTGGCAA
CAAAAGCCTGATAACTGGGTGATAAACCTTCATAAGAAACCACATTACAAATTGAGTGTTGAATA
CACGATCTCACACTTTTCCCTAAAGCAATCAGTTGATCAAGATCATTAAAAAATTCAATTGAATC
AAATTC
Found at i:8358802 original size:10 final size:10
Alignment explanation
Indices: 8358787--8358827 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
8358777 GACTTAAACA
8358787 AATAAGTTGC
1 AATAAGTTGC
8358797 AATAAGTTGC
1 AATAAGTTGC
8358807 AATAAGTTGC
1 AATAAGTTGC
8358817 AATAAGTTGC
1 AATAAGTTGC
8358827 A
1 A
8358828 GTGGCTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (10 bp):
AATAAGTTGC
Found at i:8364557 original size:13 final size:13
Alignment explanation
Indices: 8364539--8364563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8364529 TTACTTGTGA
8364539 TGTATTTCTAATC
1 TGTATTTCTAATC
8364552 TGTATTTCTAAT
1 TGTATTTCTAAT
8364564 TTTCTGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (13 bp):
TGTATTTCTAATC
Found at i:8368496 original size:34 final size:34
Alignment explanation
Indices: 8368431--8368496 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
8368421 AATACAGTGC
* *
8368431 AAACTTGTAAATAGTGTTAGGTCTCTGAGACCCT
1 AAACTTGTAAATAATGTTAGGTCTCTCAGACCCT
*
8368465 AAACTTGTAAATAATGTTAGGTCTTTCAGACC
1 AAACTTGTAAATAATGTTAGGTCTCTCAGACC
8368497 TTTACCTTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (34 bp):
AAACTTGTAAATAATGTTAGGTCTCTCAGACCCT
Found at i:8373990 original size:18 final size:18
Alignment explanation
Indices: 8373969--8374011 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8373959 TGAACAGCTC
* *
8373969 CGTATATGTGAACAATAT
1 CGTATACGTAAACAATAT
*
8373987 CGTATACGTAAACAGTAT
1 CGTATACGTAAACAATAT
8374005 CGTATAC
1 CGTATAC
8374012 ATGAAAAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.30
Consensus pattern (18 bp):
CGTATACGTAAACAATAT
Found at i:8375860 original size:18 final size:18
Alignment explanation
Indices: 8375803--8375870 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 18
8375793 CCATTCTTTG
8375803 TATATGTGAATAGTATTA
1 TATATGTGAATAGTATTA
* *
8375821 TACACT-TGAATAGTATCA
1 TATA-TGTGAATAGTATTA
* *
8375839 TATATGTAAATAGTATTG
1 TATATGTGAATAGTATTA
**
8375857 TATACATGAATAGT
1 TATATGTGAATAGT
8375871 GATAAATGCT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 1 0.03
18 37 0.95
19 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (18 bp):
TATATGTGAATAGTATTA
Found at i:8377642 original size:4 final size:4
Alignment explanation
Indices: 8377633--8377702 Score: 62
Period size: 4 Copynumber: 18.5 Consensus size: 4
8377623 AGTTATATTA
*
8377633 TAAT TAAT TAAT TAAT TAAT TAA- TAAT T-A- TAATT TAAC T-AT T-AT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA-T TAAT TAAT TAAT
*
8377677 ATAA- TAAT TAAT TATT TAAT TAAT TA
1 -TAAT TAAT TAAT TAAT TAAT TAAT TA
8377703 TATAATTATA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
2 1 0.02
3 12 0.22
4 38 0.69
5 4 0.07
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:8377675 original size:25 final size:22
Alignment explanation
Indices: 8377644--8377712 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 22
8377634 AATTAATTAA
8377644 TTAATTAATTAATAATTATAAT
1 TTAATTAATTAATAATTATAAT
* *
8377666 TTAACTATTATATAATAATTAATTAT
1 TTAA-T-TAAT-TAATAATT-ATAAT
8377692 TTAATTAATTATATAATTATA
1 TTAATTAATTA-ATAATTATA
8377713 CAAATGTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
22 4 0.11
23 5 0.13
24 12 0.32
25 9 0.24
26 8 0.21
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTAATTAATAATTATAAT
Found at i:8378905 original size:34 final size:33
Alignment explanation
Indices: 8378805--8378912 Score: 112
Period size: 34 Copynumber: 3.2 Consensus size: 33
8378795 TTCATATATG
* *
8378805 CAAATCT-AAAATCTTTTAAAAGTTTTTGGATATG
1 CAAATCTAAAAATC-TTTAAAA-TTTTTGGATTTA
* * *
8378839 TAAATTTAAAAAT-TTTAAGAATTTTTGAATTTA
1 CAAATCTAAAAATCTTTAA-AATTTTTGGATTTA
8378872 CAAATCTAAAAATTCTTTAAAATTTTTGGATTTA
1 CAAATCTAAAAA-TCTTTAAAATTTTTGGATTTA
*
8378906 GAAATCT
1 CAAATCT
8378913 GGAAGCTTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
33 24 0.39
34 27 0.44
35 10 0.16
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (33 bp):
CAAATCTAAAAATCTTTAAAATTTTTGGATTTA
Found at i:8380167 original size:15 final size:17
Alignment explanation
Indices: 8380147--8380179 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
8380137 GGTTGTTTAG
8380147 TTTGTTG-TTA-TAGCT
1 TTTGTTGATTATTAGCT
8380162 TTTGTTGATTATTAGCT
1 TTTGTTGATTATTAGCT
8380179 T
1 T
8380180 AACTAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.15, C:0.06, G:0.18, T:0.61
Consensus pattern (17 bp):
TTTGTTGATTATTAGCT
Found at i:8390385 original size:3 final size:3
Alignment explanation
Indices: 8390377--8390401 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8390367 ATGGAGTTTT
8390377 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
8390402 GCATGTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8406639 original size:17 final size:18
Alignment explanation
Indices: 8406599--8406631 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8406589 TTATTCGTCG
8406599 ATTT-TTTTTAATATTTA
1 ATTTATTTTTAATATTTA
8406616 ATTTATTTTTAA-ATTT
1 ATTTATTTTTAATATTT
8406632 TTTTTATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTATTTTTAATATTTA
Found at i:8408399 original size:2 final size:2
Alignment explanation
Indices: 8408387--8408428 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
8408377 CCCACACTAT
8408387 TC TC T- TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8408428 T
1 T
8408429 TTGTATTTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8412918 original size:19 final size:19
Alignment explanation
Indices: 8412894--8412936 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
8412884 TAACCAAATT
8412894 ATAATTATAATATAATATA
1 ATAATTATAATATAATATA
* **
8412913 ATAATTTTAATATTTTATA
1 ATAATTATAATATAATATA
8412932 ATAAT
1 ATAAT
8412937 AAGATTGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATTATAATATAATATA
Found at i:8414754 original size:22 final size:22
Alignment explanation
Indices: 8414699--8414847 Score: 68
Period size: 22 Copynumber: 6.7 Consensus size: 22
8414689 TGATTTGCTG
* *
8414699 TTAAGTTATATTATTAATTTATTA
1 TTAAGTTATA--AATAATTTACTA
**
8414723 TTAAAATATAAATAATTTACTA
1 TTAAGTTATAAATAATTTACTA
* * *
8414745 TTAAGTTATATAGACTTTACTA
1 TTAAGTTATAAATAATTTACTA
* * *
8414767 TTAAGCTA-AAATTGATTTATTA
1 TTAAGTTATAAA-TAATTTACTA
* * * * *
8414789 ATAAGTTATCATTGATTTACAA
1 TTAAGTTATAAATAATTTACTA
* * *
8414811 CTAAATTATAAATGATTTAGC-A
1 TTAAGTTATAAATAATTTA-CTA
* *
8414833 TTTAGTTATCAATAA
1 TTAAGTTATAAATAA
8414848 ATTATGACTA
Statistics
Matches: 92, Mismatches: 30, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
21 2 0.02
22 80 0.87
23 2 0.02
24 8 0.09
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (22 bp):
TTAAGTTATAAATAATTTACTA
Found at i:8415039 original size:15 final size:15
Alignment explanation
Indices: 8415019--8415076 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
8415009 TCAGTGATTT
8415019 ATTATTAAGTTATTA
1 ATTATTAAGTTATTA
*
8415034 ATTATTTA-TTATTA
1 ATTATTAAGTTATTA
* *
8415048 AGTTA-TAAATTATTT
1 A-TTATTAAGTTATTA
*
8415063 ACTATTAAGTTATT
1 ATTATTAAGTTATT
8415077 GATGATTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 11 0.31
15 24 0.69
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (15 bp):
ATTATTAAGTTATTA
Found at i:8415040 original size:22 final size:22
Alignment explanation
Indices: 8414978--8415142 Score: 136
Period size: 22 Copynumber: 7.5 Consensus size: 22
8414968 TCAATTAACA
*
8414978 ATTAAGTCATT-ATTGATTTATT
1 ATTAAGTTATTAATT-ATTTATT
* * * * *
8415000 ACTATGTTATCAGTGATTTATT
1 ATTAAGTTATTAATTATTTATT
8415022 ATTAAGTTATTAATTATTTATT
1 ATTAAGTTATTAATTATTTATT
* *
8415044 ATTAAGTTATAAATTATTTACT
1 ATTAAGTTATTAATTATTTATT
* * *
8415066 ATTAAGTTATTGATGATTTAGT
1 ATTAAGTTATTAATTATTTATT
* * *
8415088 ACTAAGTTATTGATAATTTATT
1 ATTAAGTTATTAATTATTTATT
* * *
8415110 ATAAAGTTA-TAACTAATTTACT
1 ATTAAGTTATTAA-TTATTTATT
*
8415132 ATGAAGTTATT
1 ATTAAGTTATT
8415143 GATGATTCAT
Statistics
Matches: 115, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
21 2 0.02
22 111 0.97
23 2 0.02
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.50
Consensus pattern (22 bp):
ATTAAGTTATTAATTATTTATT
Found at i:8415044 original size:7 final size:7
Alignment explanation
Indices: 8415019--8415076 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
8415009 TCAGTGATTT
8415019 ATTATTA
1 ATTATTA
8415026 AGTTATTA
1 A-TTATTA
*
8415034 ATTATTT
1 ATTATTA
8415041 ATTATTA
1 ATTATTA
*
8415048 AGTTATAA
1 A-TTATTA
*
8415056 ATTATTT
1 ATTATTA
*
8415063 ACTATTA
1 ATTATTA
8415070 AGTTATT
1 A-TTATT
8415077 GATGATTTAG
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
7 23 0.57
8 17 0.43
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (7 bp):
ATTATTA
Found at i:8415075 original size:66 final size:66
Alignment explanation
Indices: 8415005--8415149 Score: 184
Period size: 66 Copynumber: 2.2 Consensus size: 66
8414995 TTATTACTAT
* * * * * *
8415005 GTTATCAG-TGATTTATTATTAAGTTATTAATTATTTATTATTAAGTTATAAATTATTTACTATT
1 GTTAT-AGATGATTTAGTACTAAGTTATTAATAATTTATTATAAAGTTATAAATAATTTACTATG
8415069 AA
65 AA
* * *
8415071 GTTATTGATGATTTAGTACTAAGTTATTGATAATTTATTATAAAGTTATAACTAATTTACTATGA
1 GTTATAGATGATTTAGTACTAAGTTATTAATAATTTATTATAAAGTTATAAATAATTTACTATGA
8415136 A
66 A
*
8415137 GTTATTGATGATT
1 GTTATAGATGATT
8415150 CATTACAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 1 0.01
66 68 0.99
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (66 bp):
GTTATAGATGATTTAGTACTAAGTTATTAATAATTTATTATAAAGTTATAAATAATTTACTATGA
A
Found at i:8415129 original size:44 final size:43
Alignment explanation
Indices: 8415015--8415163 Score: 120
Period size: 44 Copynumber: 3.4 Consensus size: 43
8415005 GTTATCAGTG
* * * ** *
8415015 ATTTATTATTAAGTTATTAATTATTTATTATTAAGTTATAAATT
1 ATTTATTATAAAGTTATTAATAATTTACTA-TAAGTTATTGATA
* * * * *
8415059 ATTTACTATTAAGTTATTGATGATTTAGTACTAAGTTATTGATA
1 ATTTATTATAAAGTTATTAATAATTTACTA-TAAGTTATTGATA
*
8415103 ATTTATTATAAAGTTA-TAACTAATTTACTATGAAGTTATTGATG
1 ATTTATTATAAAGTTATTAA-TAATTTACTAT-AAGTTATTGATA
* * *
8415147 ATTCATTACAAAATTAT
1 ATTTATTATAAAGTTAT
8415164 CATTGATATA
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
43 3 0.04
44 82 0.96
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (43 bp):
ATTTATTATAAAGTTATTAATAATTTACTATAAGTTATTGATA
Found at i:8415183 original size:66 final size:65
Alignment explanation
Indices: 8415046--8415187 Score: 151
Period size: 66 Copynumber: 2.2 Consensus size: 65
8415036 TATTTATTAT
* * * * * * * *
8415046 TAAGTTATAAATTATTTACTATTAAGTTATTGATGATTTAGTACTAAGTTATTGATAATTTATTA
1 TAAGTTATAAATAATTTACTATGAAGTTATTGATGATTCAGTACAAAATTATTCATAATATATAA
* * *
8415111 TAAAGTTATAACTAATTTACTATGAAGTTATTGATGATTCATTACAAAATTA-TCATTGATATAT
1 T-AAGTTATAAATAATTTACTATGAAGTTATTGATGATTCAGTACAAAATTATTCA-TAATATAT
8415175 AA
64 AA
8415177 CTAAGTTATAA
1 -TAAGTTATAA
8415188 GTGACATATT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
65 3 0.05
66 59 0.94
67 1 0.02
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (65 bp):
TAAGTTATAAATAATTTACTATGAAGTTATTGATGATTCAGTACAAAATTATTCATAATATATAA
Found at i:8415718 original size:22 final size:22
Alignment explanation
Indices: 8415612--8415774 Score: 102
Period size: 22 Copynumber: 7.5 Consensus size: 22
8415602 ATCTTATCAC
* * *
8415612 TAATTTACTACTAAATTA-TCA
1 TAATTTACTATTAAGTTATTAA
*
8415633 TGATTTA-TCATTAAGTTA-TAGA
1 TAATTTACT-ATTAAGTTATTA-A
* * * *
8415655 TGATTTATTGTTAAGTTATAAA
1 TAATTTACTATTAAGTTATTAA
* * *
8415677 TGATTTATTACTT-AGTTATTGA
1 TAATTTACTA-TTAAGTTATTAA
8415699 TAATTTACTATTAAGTTATTAA
1 TAATTTACTATTAAGTTATTAA
* * *
8415721 TAATTTATTA-TAATATTATTAC
1 TAATTTACTATTAA-GTTATTAA
* *
8415743 TGATTTACTATAAAGTTATTAA
1 TAATTTACTATTAAGTTATTAA
*
8415765 TAATTAACTA
1 TAATTTACTA
8415775 ATTTACAATT
Statistics
Matches: 112, Mismatches: 22, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
20 1 0.01
21 19 0.17
22 86 0.77
23 6 0.05
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (22 bp):
TAATTTACTATTAAGTTATTAA
Found at i:8415729 original size:44 final size:43
Alignment explanation
Indices: 8415612--8415769 Score: 133
Period size: 44 Copynumber: 3.6 Consensus size: 43
8415602 ATCTTATCAC
* * * * * *
8415612 TAATTTACTACTAAATTA-TCATGATTTATCATTAAGTTATAGA
1 TAATTTACTATTAAGTTATTAATAATTTATTATT-AGTTATTGA
* * * * *
8415655 TGATTTATTGTTAAGTTATAAATGATTTATTACTTAGTTATTGA
1 TAATTTACTATTAAGTTATTAATAATTTATTA-TTAGTTATTGA
8415699 TAATTTACTATTAAGTTATTAATAATTTATTATAATA-TTATT-A
1 TAATTTACTATTAAGTTATTAATAATTTATTAT--TAGTTATTGA
* *
8415742 CTGATTTACTATAAAGTTATTAATAATT
1 -TAATTTACTATTAAGTTATTAATAATT
8415770 AACTAATTTA
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
43 15 0.16
44 75 0.80
45 4 0.04
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (43 bp):
TAATTTACTATTAAGTTATTAATAATTTATTATTAGTTATTGA
Found at i:8415730 original size:11 final size:11
Alignment explanation
Indices: 8415692--8415769 Score: 52
Period size: 11 Copynumber: 7.1 Consensus size: 11
8415682 TATTACTTAG
*
8415692 TTATTGATAAT
1 TTATTAATAAT
* * *
8415703 TTACTATTAAG
1 TTATTAATAAT
8415714 TTATTAATAAT
1 TTATTAATAAT
8415725 TTATT-ATAAT
1 TTATTAATAAT
* *
8415735 ATTATTACTGAT
1 -TTATTAATAAT
* *
8415747 TTACT-ATAAAG
1 TTATTAAT-AAT
8415758 TTATTAATAAT
1 TTATTAATAAT
8415769 T
1 T
8415770 AACTAATTTA
Statistics
Matches: 48, Mismatches: 15, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
10 6 0.12
11 37 0.77
12 5 0.10
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (11 bp):
TTATTAATAAT
Found at i:8415874 original size:66 final size:66
Alignment explanation
Indices: 8415795--8415918 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
8415785 AAATTATCAT
* *
8415795 TGATTTATAACTAAATTATCACTAATTTACAACTAAGTTATCAATGT-TTTACTATTATGTTATT
1 TGATTTATAACTAAATTATCAATAATTTACAACTAAATTATCAAT-TATTTACTATTATGTTATT
8415859 AA
65 AA
* * *
8415861 TGATTTACT-ACTAAGTTATCAATAATTTACTACTAAATTATTAATTATTTACTATTAT
1 TGATTTA-TAACTAAATTATCAATAATTTACAACTAAATTATCAATTATTTACTATTAT
8415919 ACTATTATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
65 1 0.02
66 49 0.96
67 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (66 bp):
TGATTTATAACTAAATTATCAATAATTTACAACTAAATTATCAATTATTTACTATTATGTTATTA
A
Found at i:8415913 original size:22 final size:22
Alignment explanation
Indices: 8415773--8415914 Score: 115
Period size: 22 Copynumber: 6.5 Consensus size: 22
8415763 AATAATTAAC
* * * *
8415773 TAATTTACAATTAAATTATCAT
1 TAATTTACTACTAAGTTATCAA
* * *
8415795 TGATTTA-TAACTAAATTATCAC
1 TAATTTACT-ACTAAGTTATCAA
*
8415817 TAATTTACAACTAAGTTATCAA
1 TAATTTACTACTAAGTTATCAA
** * * *
8415839 TGTTTTACTATTATGTTATTAA
1 TAATTTACTACTAAGTTATCAA
*
8415861 TGATTTACTACTAAGTTATCAA
1 TAATTTACTACTAAGTTATCAA
* *
8415883 TAATTTACTACTAAATTATTAA
1 TAATTTACTACTAAGTTATCAA
*
8415905 TTATTTACTA
1 TAATTTACTA
8415915 TTATACTATT
Statistics
Matches: 96, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
22 96 1.00
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (22 bp):
TAATTTACTACTAAGTTATCAA
Found at i:8415913 original size:44 final size:44
Alignment explanation
Indices: 8415767--8415914 Score: 136
Period size: 44 Copynumber: 3.3 Consensus size: 44
8415757 GTTATTAATA
* * * * *
8415767 ATTAACTAATTTACAATTAAATTATCATTGATTTA-TAACTAAATT
1 ATTAA-TAATTTACTACTAAGTTATCAATAATTTACT-ACTAAATT
* * * ** * **
8415812 ATCACTAATTTACAACTAAGTTATCAATGTTTTACTATTATGTT
1 ATTAATAATTTACTACTAAGTTATCAATAATTTACTACTAAATT
*
8415856 ATTAATGATTTACTACTAAGTTATCAATAATTTACTACTAAATT
1 ATTAATAATTTACTACTAAGTTATCAATAATTTACTACTAAATT
*
8415900 ATTAATTATTTACTA
1 ATTAATAATTTACTA
8415915 TTATACTATT
Statistics
Matches: 83, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
44 79 0.95
45 4 0.05
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (44 bp):
ATTAATAATTTACTACTAAGTTATCAATAATTTACTACTAAATT
Found at i:8416438 original size:22 final size:22
Alignment explanation
Indices: 8415775--8416471 Score: 104
Period size: 22 Copynumber: 31.7 Consensus size: 22
8415765 TAATTAACTA
* *
8415775 ATTTACAATTAAATTATCATTG
1 ATTTACTATTAAATTATTATTG
* * * *
8415797 ATTTA-TAACTAAATTATCACTA
1 ATTTACT-ATTAAATTATTATTG
* * * * *
8415819 ATTTACAACTAAGTTATCAATG
1 ATTTACTATTAAATTATTATTG
* ** *
8415841 TTTTACTATTATGTTATTAATG
1 ATTTACTATTAAATTATTATTG
* * * * *
8415863 ATTTACTACTAAGTTATCAATA
1 ATTTACTATTAAATTATTATTG
*
8415885 ATTTACTACTAAATTATTAATT-
1 ATTTACTATTAAATTATT-ATTG
* *
8415907 ATTTACTATTATACTATTATAT-
1 ATTTACTATTAAATTATTAT-TG
* *** *
8415929 ATTTGCTATTTTGTTATCATTG
1 ATTTACTATTAAATTATTATTG
* * *
8415951 ATTTACTATTGAGTT-TTAGTG
1 ATTTACTATTAAATTATTATTG
*
8415972 A-TTAGCTATTAAATTATCATTG
1 ATTTA-CTATTAAATTATTATTG
* ** *
8415994 ATTTATTGCTAAGTTATGTA-TG
1 ATTTACTATTAAATTAT-TATTG
* * *
8416016 ATTTTCTACTAAA-TATGTAATTT
1 ATTTACTATTAAATTAT-T-ATTG
* * * **
8416039 AATTACTATTAAACTA-AACTAA
1 ATTTACTATTAAATTATTA-TTG
* *** * * *
8416061 ATTTATTATTATGCTATCACTA
1 ATTTACTATTAAATTATTATTG
* * *
8416083 ATTTACTACTAAGTTTTTATTG
1 ATTTACTATTAAATTATTATTG
* * * *
8416105 ATTTACCACTAAATTATCAATG
1 ATTTACTATTAAATTATTATTG
* * *
8416127 ATTAACTATTAAGTTATCATT-
1 ATTTACTATTAAATTATTATTG
* * * *
8416148 -TTT--TATGAAGTTATCATTA
1 ATTTACTATTAAATTATTATTG
* * * **
8416167 ATTCACAACTATGTTATTA-TG
1 ATTTACTATTAAATTATTATTG
* * ** *
8416188 CATTTACAACTATGTTATAATTG
1 -ATTTACTATTAAATTATTATTG
* * *
8416211 ATTTATTATTAAGTCATTA-TG
1 ATTTACTATTAAATTATTATTG
* * * *
8416232 CTTTGACTATTATATTATTACTA
1 ATTT-ACTATTAAATTATTATTG
* *
8416255 ATTTACTACTAAATTATAATTG
1 ATTTACTATTAAATTATTATTG
* * * * *
8416277 ATATACTATTAAGTGATATCTCTA
1 ATTTACTATTAAATTAT-TAT-TG
*
8416301 ATTTACCATATTAAATTATTACTG
1 ATTTA-C-TATTAAATTATTATTG
* * * *
8416325 ACTAACTATTAATTTACTGA-TG
1 ATTTACTATTAAATTA-TTATTG
*
8416347 A-TTACTATTAAGTTA-TATTG
1 ATTTACTATTAAATTATTATTG
* *
8416367 ATTTACTTTTAATTTTTAATTATT-
1 ATTTACTATTAA--ATT-ATTATTG
* * *
8416391 AATTACTACTT-AGTTATAAATT-
1 ATTTACTA-TTAAATTAT-TATTG
*
8416413 ATTTACTATTAAATTATCATTG
1 ATTTACTATTAAATTATTATTG
* * **
8416435 ATTTATTACTAAGCTATT-TATG
1 ATTTACTATTAAATTATTAT-TG
*
8416457 ATTTACTACTAAATT
1 ATTTACTATTAAATT
8416472 TGTCAATTAA
Statistics
Matches: 492, Mismatches: 145, Indels: 76
0.69 0.20 0.11
Matches are distributed among these distances:
18 14 0.03
19 1 0.00
20 10 0.02
21 57 0.12
22 344 0.70
23 30 0.06
24 19 0.04
25 8 0.02
26 9 0.02
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (22 bp):
ATTTACTATTAAATTATTATTG
Found at i:8416785 original size:22 final size:22
Alignment explanation
Indices: 8416760--8417094 Score: 148
Period size: 22 Copynumber: 15.7 Consensus size: 22
8416750 ACTGAATCTT
8416760 ATTTACTATTAAGTTATCATTA
1 ATTTACTATTAAGTTATCATTA
*
8416782 ATTTACTATTAAGTTATCATTG
1 ATTTACTATTAAGTTATCATTA
* * *
8416804 ATTTATTACTAAGTTATCAATA
1 ATTTACTATTAAGTTATCATTA
* * * *
8416826 ATTAACTACTAAGTTATCGTTC
1 ATTTACTATTAAGTTATCATTA
** *
8416848 ATTTTTTATTAAGTTAT-TTTA
1 ATTTACTATTAAGTTATCATTA
* *
8416869 ATTTACTAATATGTGT-T-A-TA
1 ATTTACTATTAAGT-TATCATTA
* * * * *
8416889 CATTTACAATTATG-TATAAATG
1 -ATTTACTATTAAGTTATCATTA
* *
8416911 ATTTACTATTAAGTTAT-TTGTT
1 ATTTACTATTAAGTTATCAT-TA
* * * **
8416933 ATTT-CTTACTATGTTATTATGC
1 ATTTAC-TATTAAGTTATCATTA
* *
8416955 ATTTATTATTATGTTATCA-T-
1 ATTTACTATTAAGTTATCATTA
*
8416975 A--CACTATT---TTATCAATT-
1 ATTTACTATTAAGTTATC-ATTA
* * *
8416992 ATTTACTACTAAATTA-CTATTT
1 ATTTACTATTAAGTTATC-ATTA
*
8417014 ATTTACTATTAAGTTATTATTA
1 ATTTACTATTAAGTTATCATTA
*
8417036 TTTTACTATTAAGTTATCCA-TA
1 ATTTACTATTAAGTTAT-CATTA
*
8417058 ATTTATTA-TACAGTTATCATTA
1 ATTTACTATTA-AGTTATCATTA
* *
8417080 ATTTAGTATAAAGTT
1 ATTTACTATTAAGTT
8417095 GCTACTGATT
Statistics
Matches: 237, Mismatches: 53, Indels: 46
0.71 0.16 0.14
Matches are distributed among these distances:
15 5 0.02
16 1 0.00
17 2 0.01
18 5 0.02
19 6 0.03
20 4 0.02
21 45 0.19
22 166 0.70
23 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCATTA
Found at i:8419652 original size:152 final size:151
Alignment explanation
Indices: 8419478--8419754 Score: 369
Period size: 152 Copynumber: 1.8 Consensus size: 151
8419468 AATTGATTTA
* * * *
8419478 AATTTAAATAACTAACGAATAAAAAGT-TGTCTATTTAATGACAAATAATCTTTATTAAATAAAT
1 AATTTAAATAACTAACGAAT--AAAGTATATATATTTAATGAAAAATAATCTTTAATAAATAAAT
* *
8419542 AAATAAATGCTAAAAATTTAAAGGT-AAATTTATTATTTTTTAAAATTCATAAGAATATTTAAGT
64 AAA-AAATGCTAAAAATTTAAAGATAAAATTTATTATTTCTTAAAATTCATAAGAATATTTAAGT
8419606 GATTACTTTTAACACTTTTGGATT
128 GATTACTTTTAACACTTTTGGATT
* * * *
8419630 AATTTAAATAATTAACTAATAAATTATATATATTTAATGAAAAATAATCTTTAATACATAAATAA
1 AATTTAAATAACTAACGAATAAAGTATATATATTTAATGAAAAATAATCTTTAATAAATAAATAA
* * ** *
8419695 AAAATGCTAGAAATTTAAAGATAAAAATTTGTTATTTCTTAAAATTTGTAAGGATATTTA
66 AAAATGCTAAAAATTTAAAGAT-AAAATTTATTATTTCTTAAAATTCATAAGAATATTTA
8419755 TATCGTTCAC
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
150 23 0.21
151 35 0.33
152 49 0.46
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (151 bp):
AATTTAAATAACTAACGAATAAAGTATATATATTTAATGAAAAATAATCTTTAATAAATAAATAA
AAAATGCTAAAAATTTAAAGATAAAATTTATTATTTCTTAAAATTCATAAGAATATTTAAGTGAT
TACTTTTAACACTTTTGGATT
Found at i:8419802 original size:152 final size:153
Alignment explanation
Indices: 8419509--8419823 Score: 349
Period size: 152 Copynumber: 2.1 Consensus size: 153
8419499 AAAAGTTGTC
* * *
8419509 TATTTAATGACAAATAATCTTTATTAAATAAATAAATAAATGCTAAAAATTTAAAGGTAAATTTA
1 TATTTAATGAAAAATAATCTTTAATAAATAAATAAATAAATGCTAAAAATTTAAAGATAAATTTA
* * * *
8419574 TTATTTTTTAAAATTCATAAGAATATTTAAGTGATTACTTTTAACACTTTTGGATTAATTTAAAT
66 TTATTTCTTAAAATTCATAAGAATATTTAAGTGATTACTTTTAACAATTTTGAATTAATATAAAT
8419639 AATTAACTAATAAAT-TATAT-A
131 AATTAACTAATAAATATATATGA
* *
8419660 TATTTAATGAAAAATAATCTTTAATACATAAATAAA-AAATGCTAGAAATTTAAAGATAAAAATT
1 TATTTAATGAAAAATAATCTTTAATAAATAAATAAATAAATGCTAAAAATTTAAAGAT--AAATT
* ** * * *
8419724 TGTTATTTCTTAAAATTTGTAAGGATATTTATA-TCG-TTCACTTTTAATAATTTTAGAATTCAT
64 TATTATTTCTTAAAATTCATAAGAATATTTA-AGT-GATT-ACTTTTAACAATTTT-GAATTAAT
* *
8419787 ATATAT-A-TATA-TAATATATATATATGA
125 ATAAATAATTA-ACTAATAAATATATATGA
8419814 TATTTGAATG
1 TATTT-AATG
8419824 GTATATGCGG
Statistics
Matches: 137, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
150 19 0.14
151 33 0.24
152 43 0.31
153 22 0.16
154 16 0.12
155 4 0.03
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (153 bp):
TATTTAATGAAAAATAATCTTTAATAAATAAATAAATAAATGCTAAAAATTTAAAGATAAATTTA
TTATTTCTTAAAATTCATAAGAATATTTAAGTGATTACTTTTAACAATTTTGAATTAATATAAAT
AATTAACTAATAAATATATATGA
Found at i:8419805 original size:13 final size:13
Alignment explanation
Indices: 8419787--8419816 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8419777 TAGAATTCAT
8419787 ATATATATATATA
1 ATATATATATATA
*
8419800 ATATATATATATG
1 ATATATATATATA
8419813 ATAT
1 ATAT
8419817 TTGAATGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
ATATATATATATA
Found at i:8419811 original size:151 final size:151
Alignment explanation
Indices: 8419509--8419789 Score: 352
Period size: 152 Copynumber: 1.8 Consensus size: 151
8419499 AAAAGTTGTC
* * *
8419509 TATTTAATGACAAATAATCTTTATTAAATAAATAAATAAATGCTAAAAATTTAAAGGTAAATTTA
1 TATTTAATGAAAAATAATCTTTAATAAATAAATAAATAAATGCTAAAAATTTAAAGATAAATTTA
* * * *
8419574 TTATTTTTTAAAATTCATAAGAATATTTAAGTGATTACTTTTAACACTTTTGGATTAATTTAAAT
66 TTATTTCTTAAAATTCATAAGAATATTTAAGTGATTACTTTTAACAATTTTGAATTAATATAAAT
8419639 AATTAACTAATAAATTATATA
131 AATTAACTAATAAATTATATA
* *
8419660 TATTTAATGAAAAATAATCTTTAATACATAAATAAA-AAATGCTAGAAATTTAAAGATAAAAATT
1 TATTTAATGAAAAATAATCTTTAATAAATAAATAAATAAATGCTAAAAATTTAAAGAT--AAATT
* ** * * *
8419724 TGTTATTTCTTAAAATTTGTAAGGATATTTATA-TCG-TTCACTTTTAATAATTTTAGAATTCAT
64 TATTATTTCTTAAAATTCATAAGAATATTTA-AGT-GATT-ACTTTTAACAATTTT-GAATTAAT
8419787 ATA
125 ATA
8419790 TATATATATA
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
150 19 0.17
151 33 0.30
152 34 0.31
153 15 0.14
154 8 0.07
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.42
Consensus pattern (151 bp):
TATTTAATGAAAAATAATCTTTAATAAATAAATAAATAAATGCTAAAAATTTAAAGATAAATTTA
TTATTTCTTAAAATTCATAAGAATATTTAAGTGATTACTTTTAACAATTTTGAATTAATATAAAT
AATTAACTAATAAATTATATA
Found at i:8421577 original size:28 final size:28
Alignment explanation
Indices: 8421517--8421579 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
8421507 TATTAAATTG
* *
8421517 TAAAATTTTTAAAATTAGATTATTAAAA
1 TAAAATTTTTAAAATTAAATGATTAAAA
8421545 TAAAATTTTTCAAAAGTTAAATGA-TAAAA
1 TAAAATTTTT-AAAA-TTAAATGATTAAAA
8421574 -AAAATT
1 TAAAATT
8421580 GTAATTGATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 16 0.52
29 9 0.29
30 6 0.19
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.38
Consensus pattern (28 bp):
TAAAATTTTTAAAATTAAATGATTAAAA
Found at i:8421815 original size:64 final size:64
Alignment explanation
Indices: 8421714--8421846 Score: 187
Period size: 64 Copynumber: 2.1 Consensus size: 64
8421704 TGTTGAGTGA
* ** *
8421714 AAAAAAATAATTTTATAAATGTTAGTGATTAAATTATAA-TTTTTCATTGTTGGATTATCAAAAT
1 AAAAAAATAATTTAATAAATGTTAGTGATTAAATTATAAGTTTTTC-TAATTGGATGATCAAAAT
* * *
8421778 AAAAATATACTTTAATAAATGTTATTGATTAAATTATAAGTTTTTCTAATTGGATGATCAAAAT
1 AAAAAAATAATTTAATAAATGTTAGTGATTAAATTATAAGTTTTTCTAATTGGATGATCAAAAT
8421842 AAAAA
1 AAAAA
8421847 CATCTGAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 55 0.90
65 6 0.10
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (64 bp):
AAAAAAATAATTTAATAAATGTTAGTGATTAAATTATAAGTTTTTCTAATTGGATGATCAAAAT
Found at i:8426510 original size:24 final size:26
Alignment explanation
Indices: 8426479--8426530 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 26
8426469 CAATTCAAAA
8426479 TTTTATTTTA-TTAATAAAAAT-TAT
1 TTTTATTTTATTTAATAAAAATATAT
*
8426503 TTTTATTTTATTTATTAAAAATATAT
1 TTTTATTTTATTTAATAAAAATATAT
8426529 TT
1 TT
8426531 AGAAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 10 0.40
25 10 0.40
26 5 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTATTTTATTTAATAAAAATATAT
Found at i:8427281 original size:24 final size:23
Alignment explanation
Indices: 8427255--8427318 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
8427245 CAACATACAA
*
8427255 AAAACAAAAAAAAAATATAAAATA
1 AAAACAAAAAAAAAATA-AAAACA
*
8427279 AAAA-AAAGTAAAAAATAAAAACA
1 AAAACAAA-AAAAAAATAAAAACA
* *
8427302 CAAACCAAAGAAAAAAT
1 -AAAACAAAAAAAAAAT
8427319 TAATTTATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 8 0.24
24 22 0.67
25 3 0.09
ACGTcount: A:0.80, C:0.08, G:0.03, T:0.09
Consensus pattern (23 bp):
AAAACAAAAAAAAAATAAAAACA
Found at i:8427283 original size:17 final size:17
Alignment explanation
Indices: 8427261--8427299 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8427251 ACAAAAAACA
*
8427261 AAAAAAAAATATAAAAT
1 AAAAAAAAATAAAAAAT
*
8427278 AAAAAAAAGTAAAAAAT
1 AAAAAAAAATAAAAAAT
8427295 AAAAA
1 AAAAA
8427300 CACAAACCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.13
Consensus pattern (17 bp):
AAAAAAAAATAAAAAAT
Found at i:8427285 original size:22 final size:22
Alignment explanation
Indices: 8427231--8427299 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
8427221 ATTTTTTTCC
* * *
8427231 AATAAAAATAAAAACAACATACA
1 AATAAAAAAAAAAAAAATATA-A
*
8427254 AA-AAACAAAAAAAAAATATAA
1 AATAAAAAAAAAAAAAATATAA
8427275 AATAAAAAAAAGTAAAAAATA-AA
1 AATAAAAAAAA--AAAAAATATAA
8427298 AA
1 AA
8427300 CACAAACCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 3 0.08
22 21 0.55
23 6 0.16
24 8 0.21
ACGTcount: A:0.81, C:0.06, G:0.01, T:0.12
Consensus pattern (22 bp):
AATAAAAAAAAAAAAAATATAA
Found at i:8427290 original size:10 final size:9
Alignment explanation
Indices: 8427234--8427293 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
8427224 TTTTTCCAAT
8427234 AAAAATAAA
1 AAAAATAAA
*
8427243 AACAACATACA
1 AA-AA-ATAAA
*
8427254 AAAAACAAA
1 AAAAATAAA
8427263 AAAAA-AATA
1 AAAAATAA-A
*
8427272 TAAAATAAA
1 AAAAATAAA
8427281 AAAAAGTAAA
1 AAAAA-TAAA
8427291 AAA
1 AAA
8427294 TAAAAACACA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 2 0.05
9 20 0.49
10 13 0.32
11 6 0.15
ACGTcount: A:0.82, C:0.07, G:0.02, T:0.10
Consensus pattern (9 bp):
AAAAATAAA
Found at i:8429075 original size:17 final size:17
Alignment explanation
Indices: 8429053--8429086 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8429043 CTTGGGCATG
*
8429053 TGTATTCTTTTTGGTAA
1 TGTATTCTTTTTAGTAA
8429070 TGTATTCTTTTTAGTAA
1 TGTATTCTTTTTAGTAA
8429087 GGGTGTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.15, T:0.59
Consensus pattern (17 bp):
TGTATTCTTTTTAGTAA
Found at i:8460980 original size:3 final size:3
Alignment explanation
Indices: 8460972--8461000 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8460962 TGCATAAGAC
8460972 GCT GCT GCT GCT GCT GCT GCT GCT GCT GC
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GC
8461001 ATTTGCCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.34, T:0.31
Consensus pattern (3 bp):
GCT
Found at i:8477881 original size:16 final size:16
Alignment explanation
Indices: 8477851--8477881 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8477841 TAGATTATAA
*
8477851 ATTTTTTTATAAAAAC
1 ATTTTTTTAAAAAAAC
8477867 ATTTTTTTAAAAAAA
1 ATTTTTTTAAAAAAA
8477882 AGCAAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTTTTTAAAAAAAC
Found at i:8481864 original size:15 final size:17
Alignment explanation
Indices: 8481834--8481870 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
8481824 ATATTACTGA
8481834 ATTTTGGATGTGGGCC-
1 ATTTTGGATGTGGGCCT
*
8481850 ATTTTGTAT-TGGGCCT
1 ATTTTGGATGTGGGCCT
8481866 ATTTT
1 ATTTT
8481871 CATCGACTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.14, C:0.11, G:0.27, T:0.49
Consensus pattern (17 bp):
ATTTTGGATGTGGGCCT
Found at i:8482715 original size:18 final size:17
Alignment explanation
Indices: 8482687--8482732 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
8482677 TATATGATTA
*
8482687 TTTTTTAATTAAT-TAT
1 TTTTTTTATTAATATAT
8482703 TTAATTTTTATT-ATATAT
1 TT--TTTTTATTAATATAT
8482721 TTTTTTTATTAA
1 TTTTTTTATTAA
8482733 ATTTAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 10 0.40
17 3 0.12
18 12 0.48
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTTTATTAATATAT
Found at i:8482748 original size:21 final size:21
Alignment explanation
Indices: 8482724--8482784 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
8482714 TATATATTTT
8482724 TTTTATTAAATTTAAATCAA-A
1 TTTTATTAAATTTAAAT-AATA
* *
8482745 TTTTATATAATTTTACATAATA
1 TTTTAT-TAAATTTAAATAATA
**
8482767 TTAAATTAAATTTAAATA
1 TTTTATTAAATTTAAATA
8482785 TAAAAAATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 18 0.56
22 14 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTATTAAATTTAAATAATA
Found at i:8483260 original size:19 final size:16
Alignment explanation
Indices: 8483219--8483261 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 16
8483209 TAAATTTTTT
8483219 TATTTTTTATTTTTAA
1 TATTTTTTATTTTTAA
*
8483235 TAATTTTATATATTATTAA
1 T-ATTTT-T-TATTTTTAA
8483254 TATTTTTT
1 TATTTTTT
8483262 TGAATCCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
16 2 0.09
17 6 0.26
18 6 0.26
19 9 0.39
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTTTTATTTTTAA
Found at i:8485368 original size:19 final size:19
Alignment explanation
Indices: 8485346--8485382 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8485336 AATTGAATTA
8485346 ATTTTAT-TAATTTTATATT
1 ATTTTATAT-ATTTTATATT
8485365 ATTTTATATATTTTATAT
1 ATTTTATATATTTTATAT
8485383 AATAAAATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTATATATTTTATATT
Found at i:8485370 original size:10 final size:10
Alignment explanation
Indices: 8485346--8485382 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
8485336 AATTGAATTA
*
8485346 ATTTTAT-TA
1 ATTTTATATT
8485355 ATTTTATATT
1 ATTTTATATT
8485365 ATTTTATA-T
1 ATTTTATATT
8485374 ATTTTATAT
1 ATTTTATAT
8485383 AATAAAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTTATATT
Found at i:8487350 original size:17 final size:16
Alignment explanation
Indices: 8487326--8487364 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
8487316 CATATAAACT
8487326 TAAAAAAAAAAAAAAG
1 TAAAAAAAAAAAAAAG
*
8487342 TAAAGAAAAAGAAAAAG
1 TAAA-AAAAAAAAAAAG
*
8487359 GAAAAA
1 TAAAAA
8487365 GGAAAAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (16 bp):
TAAAAAAAAAAAAAAG
Found at i:8487352 original size:6 final size:6
Alignment explanation
Indices: 8487327--8487392 Score: 57
Period size: 6 Copynumber: 11.0 Consensus size: 6
8487317 ATATAAACTT
*
8487327 AAAA-A AAAA-A AAAAG- TAAAGA AAAAGA AAAAGGA AAAAGGA AAAAGGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAA-GA AAAA-GA AAAA-GA
* *
8487375 AAAAGA GAAAGA GAAAGA
1 AAAAGA AAAAGA AAAAGA
8487393 TAATTTGTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
5 13 0.24
6 22 0.40
7 20 0.36
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:8487364 original size:14 final size:14
Alignment explanation
Indices: 8487347--8487384 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
8487337 AAAAGTAAAG
8487347 AAAAAGAAAAAGGA
1 AAAAAGAAAAAGGA
*
8487361 AAAAGGAAAAAGGA
1 AAAAAGAAAAAGGA
8487375 AAAAGAGAAA
1 AAAA-AGAAA
8487385 GAGAAAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAGGA
Found at i:8487390 original size:14 final size:14
Alignment explanation
Indices: 8487345--8487390 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
8487335 AAAAAAGTAA
*
8487345 AGAAAAAGAAAAAG
1 AGAAAAAGAGAAAG
*
8487359 -GAAAAAG-GAAAA
1 AGAAAAAGAGAAAG
8487371 AGGAAAAAGAGAAAG
1 A-GAAAAAGAGAAAG
8487386 AGAAA
1 AGAAA
8487391 GATAATTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
12 3 0.12
13 7 0.27
14 11 0.42
15 5 0.19
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AGAAAAAGAGAAAG
Found at i:8496869 original size:24 final size:24
Alignment explanation
Indices: 8496819--8496871 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8496809 ATAGATATTT
* * *
8496819 TATCTCAATTTAAAATTAAACCCA
1 TATCTAAAATTAAAATTAAACCAA
* *
8496843 TATCTAAAATTAAAATTATACTAA
1 TATCTAAAATTAAAATTAAACCAA
8496867 TATCT
1 TATCT
8496872 TTTATCTTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (24 bp):
TATCTAAAATTAAAATTAAACCAA
Found at i:8497256 original size:26 final size:25
Alignment explanation
Indices: 8497210--8497269 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 25
8497200 TAATTCAAAA
8497210 TTTTCATAATACTTATTTAAA-T-T
1 TTTTCATAATACTTATTTAAACTGT
*
8497233 TTTTCATAATAATTTATATATAAACTGT
1 TTTTCATAAT-ACTTAT-T-TAAACTGT
8497261 TTTT-ATAAT
1 TTTTCATAAT
8497270 TTTAAAAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
23 10 0.32
24 5 0.16
25 1 0.03
26 4 0.13
27 6 0.19
28 5 0.16
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.55
Consensus pattern (25 bp):
TTTTCATAATACTTATTTAAACTGT
Found at i:8501412 original size:2 final size:2
Alignment explanation
Indices: 8501405--8501431 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8501395 TGTGCAACTT
8501405 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
8501432 TGGAACAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8512013 original size:2 final size:2
Alignment explanation
Indices: 8512006--8512030 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8511996 TAATATTTCT
8512006 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
8512031 TTTTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8516282 original size:23 final size:23
Alignment explanation
Indices: 8516227--8516282 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
8516217 TTTATTTAAA
8516227 AATAAAAT--ATTATATATTATT
1 AATAAAATAAATTATATATTATT
8516248 AAT-AAATCAAATTATA-ATTTATT
1 AATAAAAT-AAATTATATA-TTATT
8516271 AATAAAATAAAT
1 AATAAAATAAAT
8516283 CAAATTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
20 4 0.13
21 3 0.10
22 1 0.03
23 18 0.60
24 4 0.13
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
AATAAAATAAATTATATATTATT
Found at i:8516641 original size:25 final size:24
Alignment explanation
Indices: 8516606--8516653 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
8516596 ATTAAAATGA
*
8516606 ATATATTTTTATTAAAAAAATTAAT
1 ATATATATTTA-TAAAAAAATTAAT
*
8516631 ATATATATTTATAAAAAATTTAA
1 ATATATATTTATAAAAAAATTAA
8516654 AATTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATATATATTTATAAAAAAATTAAT
Found at i:8516666 original size:25 final size:24
Alignment explanation
Indices: 8516605--8516667 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
8516595 AATTAAAATG
8516605 AATATATTTTTATTAAAAAAATTAA
1 AATATATTTTTA-TAAAAAAATTAA
* * *
8516630 TATATATATTTATAAAAAATTTAA
1 AATATATTTTTATAAAAAAATTAA
*
8516654 AATTTTATTTTTAT
1 AA-TATATTTTTAT
8516668 TTTTATTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
24 12 0.39
25 19 0.61
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
AATATATTTTTATAAAAAAATTAA
Found at i:8516776 original size:15 final size:17
Alignment explanation
Indices: 8516758--8516797 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
8516748 AATACTCATT
8516758 ATATAAAT-A-ATAAAA
1 ATATAAATAATATAAAA
8516773 ATATAAATAATATAAAA
1 ATATAAATAATATAAAA
8516790 ATATAAAT
1 ATATAAAT
8516798 TTACTATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 8 0.35
16 1 0.04
17 14 0.61
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
ATATAAATAATATAAAA
Found at i:8518540 original size:26 final size:27
Alignment explanation
Indices: 8518488--8518546 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
8518478 AAACAATAAT
* *
8518488 AAAAGTTACTGTAACTGTTATTGGAAA
1 AAAAATTACTGTAACTGTGATTGGAAA
* *
8518515 AAAAATTACTGTAATTGTGATTGAAAA
1 AAAAATTACTGTAACTGTGATTGGAAA
8518542 AAAAA
1 AAAAA
8518547 AATCAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (27 bp):
AAAAATTACTGTAACTGTGATTGGAAA
Found at i:8528321 original size:22 final size:21
Alignment explanation
Indices: 8528296--8528350 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 21
8528286 CATATAAATT
8528296 TTTAATAATATATTAATATATA
1 TTTAATAATA-ATTAATATATA
8528318 TTTAA-AATAA--AATATATA
1 TTTAATAATAATTAATATATA
*
8528336 -TTAATTATAATTAAT
1 TTTAATAATAATTAAT
8528351 CTAAAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 4 0.14
18 12 0.41
20 4 0.14
21 4 0.14
22 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTAATAATAATTAATATATA
Found at i:8528326 original size:24 final size:24
Alignment explanation
Indices: 8528281--8528332 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
8528271 TTTATCTTAC
* ** *
8528281 ATATTCATATAAATTTTTAATAAT
1 ATATTAATATAAATTTAAAATAAA
*
8528305 ATATTAATATATATTTAAAATAAA
1 ATATTAATATAAATTTAAAATAAA
8528329 ATAT
1 ATAT
8528333 ATATTAATTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATATTAATATAAATTTAAAATAAA
Found at i:8529489 original size:78 final size:78
Alignment explanation
Indices: 8529347--8529491 Score: 245
Period size: 78 Copynumber: 1.9 Consensus size: 78
8529337 AAAAAATTGT
* *
8529347 TAGGCAGGTTTCTCTTTTATCTGGTTATCTTATAGAAATGTCAAGTAATCTATAAACTTCCATAT
1 TAGGCAGGTCTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTATAAACTTCCATAT
8529412 AAAGTATATAAAG
66 AAAGTATATAAAG
* * *
8529425 TAGGTAGGTCTCTCTTTTATCTAGTTATTTTATAGAAATGTCAAGTAATCTATAAACTTGCATAT
1 TAGGCAGGTCTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTATAAACTTCCATAT
8529490 AA
66 AA
8529492 GGCTTTGATT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 62 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (78 bp):
TAGGCAGGTCTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTATAAACTTCCATAT
AAAGTATATAAAG
Found at i:8530848 original size:21 final size:21
Alignment explanation
Indices: 8530822--8530884 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 21
8530812 TAGGTAATTT
8530822 TTTTTTGAAATTTTTTTTTAA
1 TTTTTTGAAATTTTTTTTTAA
*
8530843 TTTTTTG--ATTTTTTTTT-G
1 TTTTTTGAAATTTTTTTTTAA
8530861 TTATTTT-AAATTTTTGTTATTAA
1 TT-TTTTGAAATTTTT-TT-TTAA
8530884 T
1 T
8530885 ATTTATACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
18 2 0.06
19 14 0.41
20 6 0.18
21 9 0.26
22 2 0.06
23 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (21 bp):
TTTTTTGAAATTTTTTTTTAA
Found at i:8530905 original size:18 final size:18
Alignment explanation
Indices: 8530882--8530921 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8530872 TTTTGTTATT
*
8530882 AATATTTATACATGTTAA
1 AATATTTAAACATGTTAA
**
8530900 AATATTTAAATTTGTTAA
1 AATATTTAAACATGTTAA
8530918 AATA
1 AATA
8530922 AAATTTTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (18 bp):
AATATTTAAACATGTTAA
Found at i:8531404 original size:15 final size:15
Alignment explanation
Indices: 8531384--8531417 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
8531374 TTTCTTCAAT
8531384 AAAACAATAATAATA
1 AAAACAATAATAATA
8531399 AAAACAATAATAATA
1 AAAACAATAATAATA
8531414 AAAA
1 AAAA
8531418 TAAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAACAATAATAATA
Found at i:8531691 original size:15 final size:15
Alignment explanation
Indices: 8531656--8531692 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
8531646 TATTTTTCTC
8531656 AAATAAAATTTTAAT
1 AAATAAAATTTTAAT
*
8531671 -AATAAATTTTTAAT
1 AAATAAAATTTTAAT
8531685 AAATAAAA
1 AAATAAAA
8531693 AAATTGCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATAAAATTTTAAT
Found at i:8534103 original size:77 final size:78
Alignment explanation
Indices: 8533893--8534188 Score: 504
Period size: 78 Copynumber: 3.8 Consensus size: 78
8533883 TGATTTTCAA
8533893 AGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGGTC
1 AGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGGTC
*
8533958 ACATTTGTTGGAT
66 AGATTTGTTGGAT
*
8533971 AGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACATCAAGCCCATCCTTCTGGGTC
1 AGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGGTC
*
8534036 AGATTTGCTGGAT
66 AGATTTGTTGGAT
* * *
8534049 TGTCAATCCC-AAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGGCCATCCTTATGGGTC
1 AGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGGTC
*
8534113 AGATTTTTTGGAT
66 AGATTTGTTGGAT
* *
8534126 AGTCCATCCCCAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGG
1 AGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGG
8534189 CCCACAATGC
Statistics
Matches: 204, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
77 70 0.34
78 134 0.66
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (78 bp):
AGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGGTC
AGATTTGTTGGAT
Found at i:8534186 original size:155 final size:156
Alignment explanation
Indices: 8533894--8534188 Score: 520
Period size: 155 Copynumber: 1.9 Consensus size: 156
8533884 GATTTTCAAA
*
8533894 GTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTCTGGGTCA
1 GTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTATGGGTCA
8533959 CATTTGTTGGATAGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACATCAAGCCCA
66 CATTTGTTGGATAGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACATCAAGCCCA
8534024 TCCTTCTGGGTCAGATTTGCTGGATT
131 TCCTTCTGGGTCAGATTTGCTGGATT
*
8534050 GTCAATCCC-AAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGGCCATCCTTATGGGTCA
1 GTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTATGGGTCA
* * * * *
8534114 GATTTTTTGGATAGTCCATCCCCAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCA
66 CATTTGTTGGATAGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACATCAAGCCCA
8534179 TCCTTCTGGG
131 TCCTTCTGGG
8534189 CCCACAATGC
Statistics
Matches: 132, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
155 123 0.93
156 9 0.07
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (156 bp):
GTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACGTCAAGCCCATCCTTATGGGTCA
CATTTGTTGGATAGTCAATCCCAAAGTTGCTTTTCCAATCACAAATGAGAATGACATCAAGCCCA
TCCTTCTGGGTCAGATTTGCTGGATT
Found at i:8535789 original size:15 final size:15
Alignment explanation
Indices: 8535769--8535797 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8535759 TATGCATGCT
8535769 TTTTTTTTTTTTTAC
1 TTTTTTTTTTTTTAC
8535784 TTTTTTTTTTTTTA
1 TTTTTTTTTTTTTA
8535798 AAGAAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.03, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTTTTAC
Found at i:8538961 original size:18 final size:17
Alignment explanation
Indices: 8538943--8538982 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
8538933 ATTCATTATA
8538943 ATAA-TTTTT-TTATTT
1 ATAATTTTTTATTATTT
8538958 ATAATTTTTTATTATTT
1 ATAATTTTTTATTATTT
*
8538975 GTAATTTT
1 ATAATTTT
8538983 AAAATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.18
16 5 0.23
17 13 0.59
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
ATAATTTTTTATTATTT
Found at i:8538963 original size:15 final size:16
Alignment explanation
Indices: 8538943--8538982 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
8538933 ATTCATTATA
8538943 ATAATTTTT-TTATTT
1 ATAATTTTTATTATTT
8538958 ATAATTTTTTATTATTT
1 ATAA-TTTTTATTATTT
*
8538975 GTAATTTT
1 ATAATTTT
8538983 AAAATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 9 0.41
17 9 0.41
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
ATAATTTTTATTATTT
Found at i:8542707 original size:13 final size:12
Alignment explanation
Indices: 8542689--8542719 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
8542679 CTTCCATAAG
8542689 AAAAAAAGAAAGA
1 AAAAAAAGAAA-A
8542702 AAAAAAAGAAAA
1 AAAAAAAGAAAA
8542714 AAAAAA
1 AAAAAA
8542720 CAACAATGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:8544214 original size:17 final size:18
Alignment explanation
Indices: 8544189--8544223 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8544179 TTTATTCTCA
*
8544189 AATTTTTATAT-TATATT
1 AATTCTTATATCTATATT
8544206 AATTCTTATATCTATATT
1 AATTCTTATATCTATATT
8544224 CAATGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTCTTATATCTATATT
Found at i:8545562 original size:69 final size:69
Alignment explanation
Indices: 8545451--8545650 Score: 328
Period size: 69 Copynumber: 2.9 Consensus size: 69
8545441 AATGTTTGGT
* * *
8545451 AGGTTTCTCCTTTATATAGTTATCTTATAGAAATGTCAAGTAATCTGTAAGCTTCCATATAAAGT
1 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAAAGT
8545516 AGGC
66 AGGC
8545520 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAAAGT
1 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAAAGT
*
8545585 AGGT
66 AGGC
* * * *
8545589 AGGTCTCCCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTATAAACTTGCATATAA
1 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAA
8545651 GGTTTTGATT
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 123 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (69 bp):
AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAAAGT
AGGC
Found at i:8549300 original size:16 final size:16
Alignment explanation
Indices: 8549279--8549310 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8549269 ATTATGCATG
*
8549279 CTTTTTTTTTTTTTTA
1 CTTTTTATTTTTTTTA
8549295 CTTTTTATTTTTTTTA
1 CTTTTTATTTTTTTTA
8549311 AAGAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.84
Consensus pattern (16 bp):
CTTTTTATTTTTTTTA
Found at i:8552483 original size:17 final size:15
Alignment explanation
Indices: 8552454--8552493 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
8552444 ATTCATTATA
8552454 ATAATTTTTTTATTT
1 ATAATTTTTTTATTT
8552469 ATAACTTTTTATTATTT
1 ATAA-TTTTT-TTATTT
*
8552486 GTAATTTT
1 ATAATTTT
8552494 AAAATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 9 0.41
17 9 0.41
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (15 bp):
ATAATTTTTTTATTT
Found at i:8556672 original size:13 final size:12
Alignment explanation
Indices: 8556654--8556684 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
8556644 CTTCCATAAG
8556654 AAAAAAAGAAAGA
1 AAAAAAAGAAA-A
8556667 AAAAAAAGAAAA
1 AAAAAAAGAAAA
8556679 AAAAAA
1 AAAAAA
8556685 CAACAATGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:8558189 original size:17 final size:18
Alignment explanation
Indices: 8558164--8558198 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8558154 TTTATTCTCA
*
8558164 AATTTTTATAT-TATATT
1 AATTCTTATATCTATATT
8558181 AATTCTTATATCTATATT
1 AATTCTTATATCTATATT
8558199 CAATGAGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTCTTATATCTATATT
Found at i:8559539 original size:69 final size:69
Alignment explanation
Indices: 8559428--8559627 Score: 319
Period size: 69 Copynumber: 2.9 Consensus size: 69
8559418 AATGTTTGGT
* * *
8559428 AGGTTTCTCCTTTATATAGTTATCTTATAGAAATGTCAAGTAATCTGTAAGCTTCCATATAAAGT
1 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAAAGT
8559493 AGGC
66 AGGC
*
8559497 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAACCTTCCATATAAAGT
1 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAAAGT
*
8559562 AGGT
66 AGGC
* * * *
8559566 AGGTCTCCCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTATAAACTTGCATATAA
1 AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAA
8559628 GGTTTTGATT
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 122 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (69 bp):
AGGTTTCTCTTTTATCTAGTTATCTTATAGAAATGTCAAGTAATCTGTAAACTTCCATATAAAGT
AGGC
Found at i:8569914 original size:2 final size:2
Alignment explanation
Indices: 8569907--8569945 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8569897 ATAGGGATAT
8569907 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8569946 TCTTTGTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8570279 original size:19 final size:19
Alignment explanation
Indices: 8570255--8570294 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
8570245 ATTTCTAAAG
8570255 AATATTGGTTGGAAAGGTA
1 AATATTGGTTGGAAAGGTA
8570274 AATATTGGTTGGAAAGGTA
1 AATATTGGTTGGAAAGGTA
8570293 AA
1 AA
8570295 GGAAGATCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (19 bp):
AATATTGGTTGGAAAGGTA
Found at i:8571907 original size:68 final size:68
Alignment explanation
Indices: 8571828--8571964 Score: 222
Period size: 68 Copynumber: 2.0 Consensus size: 68
8571818 ATTTGAACAG
* * *
8571828 ATAATATATACATTCAAATCATTATCAACAGAAAAATAACTTTT-TTTATTAACAGAAACATAAG
1 ATAATAGATACATTCAAATCATTATCAACAGAAAAAGAA-TTTTCTTTATTAACAGAAACAGAAG
8571892 ATGA
65 ATGA
*
8571896 ATAATAGATACATTCAAATCATTATCAACAGAAAAAGAATTTTCTTTATTGACAGAAACAGAAGA
1 ATAATAGATACATTCAAATCATTATCAACAGAAAAAGAATTTTCTTTATTAACAGAAACAGAAGA
8571961 TGA
66 TGA
8571964 A
1 A
8571965 CAGGAAAATA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
67 4 0.06
68 60 0.94
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.30
Consensus pattern (68 bp):
ATAATAGATACATTCAAATCATTATCAACAGAAAAAGAATTTTCTTTATTAACAGAAACAGAAGA
TGA
Found at i:8572656 original size:30 final size:30
Alignment explanation
Indices: 8572620--8572676 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
8572610 CAAAATTAAT
* * *
8572620 AAAATATTATTTTTTAAATATAAATATTTA
1 AAAATATCATTATATAAATATAAATATTTA
*
8572650 AAAATATCATTATATAAATATATATAT
1 AAAATATCATTATATAAATATAAATAT
8572677 ATAATTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (30 bp):
AAAATATCATTATATAAATATAAATATTTA
Found at i:8574338 original size:16 final size:16
Alignment explanation
Indices: 8574319--8574352 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8574309 GAATCCTTTG
8574319 TCACAAGAATTTCTTC
1 TCACAAGAATTTCTTC
8574335 TCACAAGAATTTCTTC
1 TCACAAGAATTTCTTC
8574351 TC
1 TC
8574353 TTTGTTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.38
Consensus pattern (16 bp):
TCACAAGAATTTCTTC
Found at i:8580727 original size:17 final size:18
Alignment explanation
Indices: 8580707--8580740 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8580697 AATTTTATAT
8580707 TTTAAT-AAATTATTAAA
1 TTTAATCAAATTATTAAA
8580724 TTTAATCAAATTATTAA
1 TTTAATCAAATTATTAA
8580741 TGATTCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTAATCAAATTATTAAA
Found at i:8581479 original size:6 final size:6
Alignment explanation
Indices: 8581468--8581496 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8581458 TTTATAAAGA
8581468 TTAGGG TTAGGG TTAGGG TTAGGG TTAGG
1 TTAGGG TTAGGG TTAGGG TTAGGG TTAGG
8581497 TTTTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.34
Consensus pattern (6 bp):
TTAGGG
Found at i:8593045 original size:33 final size:33
Alignment explanation
Indices: 8593003--8593067 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
8592993 TTAATTTGGC
* *
8593003 ACTAATAGCAGGGTTGTTGGAAGATGTTGAGGT
1 ACTAATAGCACGGTTGTTGGAAAATGTTGAGGT
8593036 ACTAATAGCACGGTTGTTGGAAAATGTTGAGG
1 ACTAATAGCACGGTTGTTGGAAAATGTTGAGG
8593068 CTAGAACAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.08, G:0.34, T:0.29
Consensus pattern (33 bp):
ACTAATAGCACGGTTGTTGGAAAATGTTGAGGT
Found at i:8599436 original size:25 final size:25
Alignment explanation
Indices: 8599345--8599457 Score: 76
Period size: 25 Copynumber: 4.7 Consensus size: 25
8599335 TTAAAAATAT
8599345 AATATAATATA-AA-ATTTATAAAA
1 AATATAATATATAATATTTATAAAA
* * *
8599368 ATTGT-ATATA-AATA-TAATAAAA
1 AATATAATATATAATATTTATAAAA
* * * **
8599390 AATTTTATACATTTAATATTTATATGA
1 AA-TATA-ATATATAATATTTATAAAA
* *
8599417 ATTATAATATATAATTTTTATAAAA
1 AATATAATATATAATATTTATAAAA
8599442 AATATAATATA-AATAT
1 AATATAATATATAATAT
8599458 ATCAATTATT
Statistics
Matches: 65, Mismatches: 19, Indels: 11
0.68 0.20 0.12
Matches are distributed among these distances:
22 15 0.23
23 6 0.09
24 4 0.06
25 27 0.42
26 7 0.11
27 6 0.09
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (25 bp):
AATATAATATATAATATTTATAAAA
Done.