Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 26 of 113
Found at i:8957063 original size:14 final size:14
Alignment explanation
Indices: 8957044--8957071 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8957034 TAGAAGTGAG
8957044 ATTAATTATTATAA
1 ATTAATTATTATAA
8957058 ATTAATTATTATAA
1 ATTAATTATTATAA
8957072 TGATAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTAATTATTATAA
Found at i:8957197 original size:26 final size:27
Alignment explanation
Indices: 8957168--8957221 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
8957158 ATTAAAGATA
*
8957168 TTATATTAAAATTG-TATTAATAAATT
1 TTATAATAAAATTGATATTAATAAATT
* * *
8957194 TTATAATATATTTGATATTTATAAATT
1 TTATAATAAAATTGATATTAATAAATT
8957221 T
1 T
8957222 AACAAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (27 bp):
TTATAATAAAATTGATATTAATAAATT
Found at i:8962519 original size:13 final size:13
Alignment explanation
Indices: 8962503--8962534 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8962493 TAGATTGTTA
8962503 ATATATATATTTT
1 ATATATATATTTT
8962516 ATATAT-TATTTT
1 ATATATATATTTT
8962528 AT-TATAT
1 ATATATAT
8962535 TTAATGTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 9 0.50
13 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATATATATTTT
Found at i:8962520 original size:11 final size:11
Alignment explanation
Indices: 8962504--8962536 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
8962494 AGATTGTTAA
8962504 TATATATATTT
1 TATATATATTT
8962515 TATATATTATTT
1 TATATA-TATTT
8962527 TAT-TATATTT
1 TATATATATTT
8962537 AATGTCTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 8 0.38
12 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TATATATATTT
Found at i:8975802 original size:34 final size:34
Alignment explanation
Indices: 8975764--8975841 Score: 120
Period size: 34 Copynumber: 2.3 Consensus size: 34
8975754 GTTTACTGAC
**
8975764 GCTAAACCAAAATTCTAAGCTATTTTTTATTCTT
1 GCTAAACCAAAATTCTAAGCTATTTACTATTCTT
*
8975798 GCTAAACCAAAATTCTGAGCTATTTACTATTCTT
1 GCTAAACCAAAATTCTAAGCTATTTACTATTCTT
*
8975832 GCTAAGCCAA
1 GCTAAACCAA
8975842 TAATCAAACT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (34 bp):
GCTAAACCAAAATTCTAAGCTATTTACTATTCTT
Found at i:8978029 original size:18 final size:18
Alignment explanation
Indices: 8978006--8978064 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
8977996 GGTGAATGCT
8978006 TTTTCTATTTGCCTTTTG
1 TTTTCTATTTGCCTTTTG
8978024 TTTTCTA-TT--CTTTT-
1 TTTTCTATTTGCCTTTTG
*
8978038 TTTAT-TTTTTGCCTTTTG
1 TTT-TCTATTTGCCTTTTG
*
8978056 GTTTCTATT
1 TTTTCTATT
8978065 ATTTTTTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 12
0.68 0.06 0.26
Matches are distributed among these distances:
14 4 0.12
15 8 0.25
17 8 0.25
18 12 0.38
ACGTcount: A:0.07, C:0.14, G:0.08, T:0.71
Consensus pattern (18 bp):
TTTTCTATTTGCCTTTTG
Found at i:8981205 original size:30 final size:30
Alignment explanation
Indices: 8981169--8981226 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8981159 GAATAAAATA
* *
8981169 TTTAATACAATATTTAAATTTTAAATATTT
1 TTTAATACAATATTGAAATTATAAATATTT
*
8981199 TTTAATATAATATTGAAATTATAAATAT
1 TTTAATACAATATTGAAATTATAAATAT
8981227 ATTAACTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (30 bp):
TTTAATACAATATTGAAATTATAAATATTT
Found at i:8981237 original size:32 final size:30
Alignment explanation
Indices: 8981171--8981244 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
8981161 ATAAAATATT
* * * **
8981171 TAATACAATATTTAAATTTTAAATATTTTT
1 TAATATAATATTGAAATTATAAATATTTAC
8981201 TAATATAATATTGAAATTATAAATATATTAAC
1 TAATATAATATTGAAATTATAAATAT-TT-AC
8981233 TAATATAATATT
1 TAATATAATATT
8981245 TAAAAAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 23 0.62
31 2 0.05
32 12 0.32
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (30 bp):
TAATATAATATTGAAATTATAAATATTTAC
Found at i:8985565 original size:18 final size:17
Alignment explanation
Indices: 8985538--8985576 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8985528 GCCCTTTTAT
8985538 TTCCTTTCTTTC-TCTTC
1 TTCCTTTC-TTCATCTTC
8985555 TTCCTTTTCTTCATCTTC
1 TTCC-TTTCTTCATCTTC
8985573 TTCC
1 TTCC
8985577 AGGATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.62
Consensus pattern (17 bp):
TTCCTTTCTTCATCTTC
Found at i:8989972 original size:22 final size:24
Alignment explanation
Indices: 8989938--8989985 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
8989928 TAATTTTTTA
8989938 TTAAATAATATAAATT-AT-TATT
1 TTAAATAATATAAATTAATATATT
8989960 TTAAATTAA-ATAAATTAATATATT
1 TTAAA-TAATATAAATTAATATATT
8989984 TT
1 TT
8989986 TATTAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 12 0.52
23 5 0.22
24 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TTAAATAATATAAATTAATATATT
Found at i:8991214 original size:2 final size:2
Alignment explanation
Indices: 8991207--8991240 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
8991197 TACTTTCCGA
* *
8991207 AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8991241 GAATATCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9000200 original size:225 final size:227
Alignment explanation
Indices: 8999808--9000249 Score: 798
Period size: 225 Copynumber: 2.0 Consensus size: 227
8999798 TATTTATAAT
*
8999808 TAATTTCATAATTTGACATTCAATTTGGATAAAAAAATTCTCATTTTTTTAATAAAAATCAAATC
1 TAATTTCATAATTTCACATTCAATTTGGATAAAAAAATTCTCATTTTTTTAATAAAAATCAAATC
*
8999873 ACTTCAAAATGATAATAAAATTATTCTCCGTAATTTAGAACTATCACTATTACATAGGATTTGAT
66 ACTTCAAAATGATAATAAAATTATTCTCCATAATTTAGAACTATCACTATTACATAGGATTTGAT
***
8999938 TAATTTGTAGTTATAGGAATTATTTAAGGATAGCTAAAATATTA-TTTTAAAATTTTTTTTGTTT
131 TAATTTGTAGTTATAGGAATTATTTAAGGATAGCTAAAATATTATTTTTAAAAAAATTTTTGTTT
9000002 TTATTACATTATTTTTATTAATGTAATAAAAA
196 TTATTACATTATTTTTATTAATGTAATAAAAA
* *
9000034 TAATTTCATAATTTCACATTCAATTTGGATAAAAGAATTCTCATTTTTTTAAT-AAAATTAAATC
1 TAATTTCATAATTTCACATTCAATTTGGATAAAAAAATTCTCATTTTTTTAATAAAAATCAAATC
9000098 ACTTCAAAATGATAATAAAATTATTCTCCATAATTTAGAACTATCACTATTACATAGGATTTGAT
66 ACTTCAAAATGATAATAAAATTATTCTCCATAATTTAGAACTATCACTATTACATAGGATTTGAT
9000163 TAATTTGTAGTTATAGGAATTATTTAAGGATAGCTAAAATATTATTTTTAAAAAAATTTTTGTTT
131 TAATTTGTAGTTATAGGAATTATTTAAGGATAGCTAAAATATTATTTTTAAAAAAATTTTTGTTT
*
9000228 TTATTATATTATTTTTATTAAT
196 TTATTACATTATTTTTATTAAT
9000250 TTTAAGATAA
Statistics
Matches: 207, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
225 118 0.57
226 89 0.43
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (227 bp):
TAATTTCATAATTTCACATTCAATTTGGATAAAAAAATTCTCATTTTTTTAATAAAAATCAAATC
ACTTCAAAATGATAATAAAATTATTCTCCATAATTTAGAACTATCACTATTACATAGGATTTGAT
TAATTTGTAGTTATAGGAATTATTTAAGGATAGCTAAAATATTATTTTTAAAAAAATTTTTGTTT
TTATTACATTATTTTTATTAATGTAATAAAAA
Found at i:9001075 original size:2 final size:2
Alignment explanation
Indices: 9001068--9001097 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9001058 GGCATATCTA
9001068 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9001098 TATTATAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9002051 original size:17 final size:19
Alignment explanation
Indices: 9002020--9002056 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
9002010 CAATTATATT
*
9002020 AAAAATGATTAAAAATAAA
1 AAAAATGATTAAAAACAAA
9002039 AAAAAT-ATT-AAAACAAA
1 AAAAATGATTAAAAACAAA
9002056 A
1 A
9002057 GTTTTTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 3 0.18
19 6 0.35
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (19 bp):
AAAAATGATTAAAAACAAA
Found at i:9003861 original size:23 final size:24
Alignment explanation
Indices: 9003789--9003861 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
9003779 TAATATAATA
* * *
9003789 TTAAATTTAAACTTAAATTTGATT
1 TTAAATTCAGACTTAAATTTTATT
* *
9003813 TAAAATTCAGACTTAAAATTTATT
1 TTAAATTCAGACTTAAATTTTATT
9003837 TTAAATTCTA-A-TTAAATTTTATT
1 TTAAATTC-AGACTTAAATTTTATT
9003860 TT
1 TT
9003862 TTTAATTCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
23 13 0.32
24 27 0.66
25 1 0.02
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (24 bp):
TTAAATTCAGACTTAAATTTTATT
Found at i:9017433 original size:6 final size:6
Alignment explanation
Indices: 9017422--9017448 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9017412 AAAAATTTTT
9017422 AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
9017449 AGTCAAATGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:9017505 original size:14 final size:13
Alignment explanation
Indices: 9017473--9017501 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
9017463 TACGTGAATT
9017473 TATTAAATTAATA
1 TATTAAATTAATA
9017486 TATTAAA-TAATA
1 TATTAAATTAATA
9017498 TATT
1 TATT
9017502 TTAATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATTAAATTAATA
Found at i:9017780 original size:21 final size:22
Alignment explanation
Indices: 9017742--9017788 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
9017732 TTTATCTAAT
* *
9017742 AAAAAATTAAAAGTAAAAAATC
1 AAAAAAATAAAAGCAAAAAATC
9017764 AAAAAAATAAAA-CAAAAAATC
1 AAAAAAATAAAAGCAAAAAATC
9017785 AAAA
1 AAAA
9017789 GCTTTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (22 bp):
AAAAAAATAAAAGCAAAAAATC
Found at i:9030527 original size:26 final size:26
Alignment explanation
Indices: 9030477--9030548 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 26
9030467 TTAATATAAC
*
9030477 TATTAAAATAT-TAAAAATTAATTAT
1 TATTAAAATATATTAAAATTAATTAT
* *
9030502 TATTAAAATATATTGAAATTATTTAT
1 TATTAAAATATATTAAAATTAATTAT
* *
9030528 TGTTAAAAT-TATTAATATTAA
1 TATTAAAATATATTAAAATTAA
9030549 AAAATAATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 20 0.51
26 19 0.49
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (26 bp):
TATTAAAATATATTAAAATTAATTAT
Found at i:9030547 original size:25 final size:25
Alignment explanation
Indices: 9030477--9030548 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 25
9030467 TTAATATAAC
9030477 TATTAAAA-TATTAAAAATTAATTAT
1 TATTAAAATTATT-AAAATTAATTAT
* *
9030502 TATTAAAATATATTGAAATTATTTAT
1 TATTAAAAT-TATTAAAATTAATTAT
* *
9030528 TGTTAAAATTATTAATATTAA
1 TATTAAAATTATTAAAATTAA
9030549 AAAATAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 17 0.44
26 18 0.46
27 4 0.10
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (25 bp):
TATTAAAATTATTAAAATTAATTAT
Found at i:9030550 original size:15 final size:16
Alignment explanation
Indices: 9030511--9030629 Score: 64
Period size: 16 Copynumber: 7.3 Consensus size: 16
9030501 TTATTAAAAT
*
9030511 ATATTGAAATTATTTA
1 ATATTAAAATTATTTA
* *
9030527 TTGTTAAAATTA-TTA
1 ATATTAAAATTATTTA
* *
9030542 ATATTAAAAAATAATTA
1 ATATT-AAAATTATTTA
*
9030559 TATTTTAATAA-TATTTA
1 -ATATTAA-AATTATTTA
9030576 ATATTAAATATTATGTTA
1 ATATTAAA-ATTAT-TTA
* * *
9030594 ATATAAAAAGTACTTA
1 ATATTAAAATTATTTA
* *
9030610 A-AATAAAACTATTTA
1 ATATTAAAATTATTTA
*
9030625 TTATT
1 ATATT
9030630 TTATATTATT
Statistics
Matches: 77, Mismatches: 18, Indels: 16
0.69 0.16 0.14
Matches are distributed among these distances:
15 17 0.22
16 28 0.36
17 16 0.21
18 16 0.21
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (16 bp):
ATATTAAAATTATTTA
Found at i:9030558 original size:17 final size:17
Alignment explanation
Indices: 9030532--9030583 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
9030522 ATTTATTGTT
*
9030532 AAAATTATTAATATTAA
1 AAAATAATTAATATTAA
*
9030549 AAAATAATT-ATATTTTA
1 AAAATAATTAATA-TTAA
* *
9030566 ATAATATTTAATATTAA
1 AAAATAATTAATATTAA
9030583 A
1 A
9030584 TATTATGTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 3 0.11
17 22 0.79
18 3 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATAATTAATATTAA
Found at i:9030585 original size:17 final size:17
Alignment explanation
Indices: 9030539--9030597 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
9030529 GTTAAAATTA
* *
9030539 TTAATATTAAAAAATAA
1 TTAATATTAAATAATAT
*
9030556 TT-ATATTTTAATAATAT
1 TTAATA-TTAAATAATAT
*
9030573 TTAATATTAAATATTAT
1 TTAATATTAAATAATAT
9030590 GTTAATAT
1 -TTAATAT
9030598 AAAAAGTACT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
16 3 0.09
17 21 0.62
18 10 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
TTAATATTAAATAATAT
Found at i:9030651 original size:15 final size:15
Alignment explanation
Indices: 9030648--9030848 Score: 124
Period size: 15 Copynumber: 13.9 Consensus size: 15
9030638 TTTATTAATA
9030648 TATTAATATATTATT
1 TATTAATATATTATT
9030663 TATTAATA-A-TATT
1 TATTAATATATTATT
*
9030676 TATTAATTTATTA--
1 TATTAATATATTATT
*
9030689 TATTAATGTA-TATAT
1 TATTAATATATTAT-T
9030704 TATTAAATATATTA-T
1 TATT-AATATATTATT
9030719 TA-TAATAT-TTATT
1 TATTAATATATTATT
* * *
9030732 AAGTAAATTAATAATATT
1 TA-TTAA-T-ATATTATT
* * *
9030750 AATTATTATACTATT
1 TATTAATATATTATT
*
9030765 TATTAATACATTATTT
1 TATTAATATATTA-TT
* *
9030781 TAATAGTATATTATT
1 TATTAATATATTATT
9030796 TATT-A-ATA-TA-T
1 TATTAATATATTATT
*
9030807 TA-TAATAT-TAATT
1 TATTAATATATTATT
* *
9030820 TATTAATAGATGATT
1 TATTAATATATTATT
9030835 TATTAATATATTAT
1 TATTAATATATTAT
9030849 AATATAATAT
Statistics
Matches: 143, Mismatches: 23, Indels: 40
0.69 0.11 0.19
Matches are distributed among these distances:
10 1 0.01
11 4 0.03
12 10 0.07
13 33 0.23
14 8 0.06
15 56 0.39
16 19 0.13
17 6 0.04
18 6 0.04
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTAATATATTATT
Found at i:9030680 original size:28 final size:27
Alignment explanation
Indices: 9030619--9030870 Score: 140
Period size: 28 Copynumber: 9.4 Consensus size: 27
9030609 AAAATAAAAC
* * *
9030619 TATTTATTATTTTA-TATTATTTATTAA
1 TATTTATTAATATATTATTA-TTAATAA
9030646 TA--TATTAATATATTATTTATTAATAA
1 TATTTATTAATATATTA-TTATTAATAA
* *
9030672 TATTTATTAATTTATTA-TATTAATGTA
1 TATTTATTAATATATTATTATTAAT-AA
9030699 TATATTATTAA-ATA-TATTATT-ATAA
1 TAT-TTATTAATATATTATTATTAATAA
*
9030724 TATTTATTAA-GTA--A--ATTAATAA
1 TATTTATTAATATATTATTATTAATAA
* * *
9030746 TATTAATTATTATACTATTTATTAATACA
1 TATTTATTAATATATTA-TTATTAATA-A
* *
9030775 TTATTTTAATAGTATATTATTTATTAAT-A
1 -TA-TTTATTAATATATTA-TTATTAATAA
*
9030804 TA-TTA-TAATAT-TAATTTATTAATAGA
1 TATTTATTAATATATTA-TTATTAATA-A
* *
9030830 TGATTTATTAATATATTATAATATAATAT
1 T-ATTTATTAATATATTATTAT-TAATAA
*
9030859 TATTTATAAATA
1 TATTTATTAATA
9030871 AAAGTATACT
Statistics
Matches: 180, Mismatches: 21, Indels: 47
0.73 0.08 0.19
Matches are distributed among these distances:
21 3 0.02
22 12 0.07
23 3 0.02
24 20 0.11
25 18 0.10
26 26 0.14
27 16 0.09
28 41 0.23
29 12 0.07
30 9 0.05
31 20 0.11
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (27 bp):
TATTTATTAATATATTATTATTAATAA
Found at i:9030713 original size:12 final size:12
Alignment explanation
Indices: 9030698--9030733 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
9030688 ATATTAATGT
9030698 ATATATTATTAA
1 ATATATTATTAA
9030710 ATATATTATTATA
1 ATATATTATTA-A
9030723 ATAT-TTATTAA
1 ATATATTATTAA
9030734 GTAAATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.04
12 17 0.74
13 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATATATTATTAA
Found at i:9033510 original size:16 final size:15
Alignment explanation
Indices: 9033480--9033522 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
9033470 TGTTTTATAA
*
9033480 AATTTT-TTCTTTTT
1 AATTTTATTTTTTTT
9033494 AGATTTTATTTTTTTT
1 A-ATTTTATTTTTTTT
9033510 AATTTTATTTTTT
1 AATTTTATTTTTT
9033523 AAAAATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 1 0.04
15 17 0.65
16 8 0.31
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (15 bp):
AATTTTATTTTTTTT
Found at i:9034082 original size:23 final size:23
Alignment explanation
Indices: 9034039--9034083 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
9034029 TATAAAAAAA
* *
9034039 TATATTTTATTATTTATTTAATT
1 TATATTTTATTATATAATTAATT
9034062 TATA-TTTATATATATAATTAAT
1 TATATTTTAT-TATATAATTAAT
9034084 AAAAATATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TATATTTTATTATATAATTAATT
Found at i:9034143 original size:29 final size:28
Alignment explanation
Indices: 9034062--9034136 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 28
9034052 TTATTTAATT
9034062 TATATTTATATATA-TAATTAATAAAAA
1 TATATTTATATATATTAATTAATAAAAA
*
9034089 TATCATTTA-ATATTTTAATTTAATAAAAA
1 TAT-ATTTATATATATTAA-TTAATAAAAA
9034118 TATATTTATATATAATTAA
1 TATATTTATATAT-ATTAA
9034137 GTTATAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 7 0.17
28 13 0.32
29 17 0.41
30 4 0.10
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (28 bp):
TATATTTATATATATTAATTAATAAAAA
Found at i:9036170 original size:19 final size:19
Alignment explanation
Indices: 9036148--9036191 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
9036138 ATATTCTTTT
9036148 ATTAAAG-TAATATAAAAAA
1 ATTAAAGTTAATA-AAAAAA
*
9036167 ATTAAGGTTAATAAAAAAA
1 ATTAAAGTTAATAAAAAAA
9036186 ATTAAA
1 ATTAAA
9036192 AAATCATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (19 bp):
ATTAAAGTTAATAAAAAAA
Found at i:9037396 original size:20 final size:20
Alignment explanation
Indices: 9037371--9037409 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
9037361 TATATTTATT
9037371 AAAACTTTGC-CATAACAAAG
1 AAAACTTT-CTCATAACAAAG
9037391 AAAACTTTCTCATAACAAA
1 AAAACTTTCTCATAACAAA
9037410 AAACACACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.51, C:0.21, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAACTTTCTCATAACAAAG
Found at i:9037587 original size:18 final size:18
Alignment explanation
Indices: 9037545--9037590 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
9037535 CGATTAACCG
* *
9037545 AACCAAATTGCTGAAAAA
1 AACCAACTTTCTGAAAAA
9037563 AACCAACTTTCTGAAAAA
1 AACCAACTTTCTGAAAAA
9037581 AACCAACTTT
1 AACCAACTTT
9037591 AAACGGCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.50, C:0.22, G:0.07, T:0.22
Consensus pattern (18 bp):
AACCAACTTTCTGAAAAA
Found at i:9039267 original size:87 final size:87
Alignment explanation
Indices: 9039160--9039335 Score: 298
Period size: 87 Copynumber: 2.0 Consensus size: 87
9039150 GTGTACATAT
* *
9039160 AACTGATTATAGGTGATGCAATTTTACATAGTCCAATGTTTTATGAGCAAAGGGAGTGTTTTGTT
1 AACTGATTATAGGTGATGCAATTTTACATAGTCCAATGTTTTATAAGCAAAGGGAGTGTTTTGTA
9039225 TAGTGACTTCATGCATGGAGTG
66 TAGTGACTTCATGCATGGAGTG
* * *
9039247 AACTGATTATAGGTGTTGCAATTTTACATTGTCCAATGTTTTATAAGCAAAGGGTGTGTTTTGTA
1 AACTGATTATAGGTGATGCAATTTTACATAGTCCAATGTTTTATAAGCAAAGGGAGTGTTTTGTA
*
9039312 TGGTGACTTCATGCATGGAGTG
66 TAGTGACTTCATGCATGGAGTG
9039334 AA
1 AA
9039336 TTAAATAAGT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 83 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (87 bp):
AACTGATTATAGGTGATGCAATTTTACATAGTCCAATGTTTTATAAGCAAAGGGAGTGTTTTGTA
TAGTGACTTCATGCATGGAGTG
Found at i:9041215 original size:28 final size:28
Alignment explanation
Indices: 9041183--9041238 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
9041173 AATGGGTTAT
*
9041183 AAATTATTTAAATATGTTTAAGCATGAA
1 AAATTATTTAAATATGTGTAAGCATGAA
9041211 AAATTATTTAAATATGTGTAAGCATGAA
1 AAATTATTTAAATATGTGTAAGCATGAA
9041239 CGTACGTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (28 bp):
AAATTATTTAAATATGTGTAAGCATGAA
Found at i:9041527 original size:55 final size:56
Alignment explanation
Indices: 9041461--9041566 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
9041451 TAACTATAAA
* * *
9041461 AAGAGAATAATTAT-AAAAGGTCTTT-GTGCATAATTATTTTTATTAGTTTTGCCTG
1 AAGAGAATAATTATAAAAAGGT-TTTCATGAATAATTATTTTCATTAGTTTTGCCTG
*
9041516 AAGAGAATAATTATAAAAAGGTTTTCATGAATAATTATTTTCATTATTTTT
1 AAGAGAATAATTATAAAAAGGTTTTCATGAATAATTATTTTCATTAGTTTT
9041567 ATTTAGAGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
55 17 0.38
56 28 0.62
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (56 bp):
AAGAGAATAATTATAAAAAGGTTTTCATGAATAATTATTTTCATTAGTTTTGCCTG
Found at i:9048000 original size:3 final size:3
Alignment explanation
Indices: 9047992--9048033 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
9047982 CTAATCCATT
9047992 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9048034 AAAACTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9048990 original size:32 final size:31
Alignment explanation
Indices: 9048937--9048996 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
9048927 TTTAGTTACG
*
9048937 TTATAATTAATTATTTAATTATTTTAATTTAA
1 TTATAATTAATTAATTAATTA-TTTAATTTAA
*
9048969 TTATAATATAA-TAATTCATTATTTAATT
1 TTATAAT-TAATTAATTAATTATTTAATT
9048997 GAATGTGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.28
32 15 0.60
33 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (31 bp):
TTATAATTAATTAATTAATTATTTAATTTAA
Found at i:9057357 original size:20 final size:21
Alignment explanation
Indices: 9057329--9057370 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9057319 AATAAAATTT
9057329 TTTTAATTT-ATCAATTTTAA
1 TTTTAATTTAATCAATTTTAA
* *
9057349 TTTTCATTTAATCATTTTTAA
1 TTTTAATTTAATCAATTTTAA
9057370 T
1 T
9057371 AAATAATTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTAATTTAATCAATTTTAA
Found at i:9058113 original size:20 final size:20
Alignment explanation
Indices: 9058088--9058127 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9058078 TAAATTGGTC
9058088 ATTTGTAT-ATTTTGATTTGT
1 ATTTGTATCATTTT-ATTTGT
9058108 ATTTGTATCATTTTATTTGT
1 ATTTGTATCATTTTATTTGT
9058128 TTCATGTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.20, C:0.03, G:0.12, T:0.65
Consensus pattern (20 bp):
ATTTGTATCATTTTATTTGT
Found at i:9058653 original size:21 final size:21
Alignment explanation
Indices: 9058593--9058658 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
9058583 TTTTATTAAA
* * *
9058593 AAAATTTTATAAAAAATTATT
1 AAAATTGTATAATAAATTATC
* *
9058614 AAAATTGTGTACAT-GATTATC
1 AAAATTGTATA-ATAAATTATC
*
9058635 AAAATTGTATAATAAATTACC
1 AAAATTGTATAATAAATTATC
9058656 AAA
1 AAA
9058659 CTAATATCGA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
20 2 0.06
21 32 0.91
22 1 0.03
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (21 bp):
AAAATTGTATAATAAATTATC
Found at i:9059476 original size:11 final size:10
Alignment explanation
Indices: 9059446--9059489 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
9059436 ATTTTATTAA
*
9059446 AAAATTTATA
1 AAAATTTATC
9059456 AAAATTTATC
1 AAAATTTATC
9059466 AAAATTATATC
1 AAAATT-TATC
* *
9059477 ATAAGTTATC
1 AAAATTTATC
9059487 AAA
1 AAA
9059490 CTAATATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (10 bp):
AAAATTTATC
Found at i:9059485 original size:21 final size:21
Alignment explanation
Indices: 9059457--9059554 Score: 80
Period size: 21 Copynumber: 4.7 Consensus size: 21
9059447 AAATTTATAA
9059457 AAAT-TTATCAAAATTATATC
1 AAATGTTATCAAAATTATATC
* *
9059477 ATAA-GTTATCAAACTAATATC
1 A-AATGTTATCAAAATTATATC
*
9059498 AAATGTTACCAAAATTGA-ATC
1 AAATGTTATCAAAATT-ATATC
*
9059519 GAAA-GTTA-CTAAAATTTTATC
1 -AAATGTTATC-AAAATTATATC
*
9059540 AAATGATATCAAAAT
1 AAATGTTATCAAAAT
9059555 CAAAATTATA
Statistics
Matches: 62, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
20 7 0.11
21 50 0.81
22 5 0.08
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (21 bp):
AAATGTTATCAAAATTATATC
Found at i:9059643 original size:78 final size:80
Alignment explanation
Indices: 9059554--9059704 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 80
9059544 GATATCAAAA
* * * *
9059554 TCAAAATTATATCAAAAGTTATCAAATTTTACTTAGAGTT-TA-AAAA-AAAAATTAAATTGTTA
1 TCAAAAGTATATAAAAAGTTATCAAAATTTACCTAGA-TTATACAAAATAAAAATTAAATTGTTA
9059616 GTATTTATCATTATTT
65 GTATTTATCATTATTT
* * *
9059632 TCAAAAGTATATAAAAAGTTATTAAAATTTACCTATATTATACCAAAATTAAAATTAAATTGTTA
1 TCAAAAGTATATAAAAAGTTATCAAAATTTACCTAGATTATA-CAAAATAAAAATTAAATTGTTA
*
9059697 GTCTTTAT
65 GTATTTAT
9059705 AACTATTATT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
77 2 0.03
78 33 0.54
80 4 0.07
81 22 0.36
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.41
Consensus pattern (80 bp):
TCAAAAGTATATAAAAAGTTATCAAAATTTACCTAGATTATACAAAATAAAAATTAAATTGTTAG
TATTTATCATTATTT
Found at i:9060341 original size:21 final size:21
Alignment explanation
Indices: 9060315--9060383 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
9060305 AAAAATTATT
*
9060315 AAAATTGTATCAATGGTTACC
1 AAAATTATATCAATGGTTACC
*
9060336 AAAATTATAT-TATAGGTTACC
1 AAAATTATATCAAT-GGTTACC
* *
9060357 AAACTAATATCAAAT-GTTACC
1 AAAATTATATC-AATGGTTACC
9060378 AAAATT
1 AAAATT
9060384 GTATTGAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
20 2 0.05
21 34 0.89
23 2 0.05
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (21 bp):
AAAATTATATCAATGGTTACC
Found at i:9060410 original size:42 final size:41
Alignment explanation
Indices: 9060297--9060417 Score: 104
Period size: 42 Copynumber: 3.0 Consensus size: 41
9060287 TTTATTGAAA
* *
9060297 AAAATTATA--AAAATTATTAAAATTGTATC-AATGGTTACC
1 AAAATTATATTAAAATTACTAAAATTATATCAAAT-GTTACC
** * * *
9060336 AAAATTATATTATAGGTTACCAAACTAATATCAAATGTTACC
1 AAAATTATATTA-AAATTACTAAAATTATATCAAATGTTACC
* * *
9060378 AAAATTGTATTGAAAATTACTAAAATTTTATCAAAAGTTA
1 AAAATTATATT-AAAATTACTAAAATTATATCAAATGTTA
9060418 TTGAAATTAA
Statistics
Matches: 62, Mismatches: 15, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
39 9 0.15
41 1 0.02
42 48 0.77
43 4 0.06
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (41 bp):
AAAATTATATTAAAATTACTAAAATTATATCAAATGTTACC
Found at i:9060451 original size:27 final size:27
Alignment explanation
Indices: 9060398--9060452 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
9060388 TGAAAATTAC
* **
9060398 TAAAATTTTATCAAAAGTTATTGAAAT
1 TAAAATTATATCAAAAGTTATCAAAAT
9060425 TAAAATTATATCAAAAGTTATCAAAAT
1 TAAAATTATATCAAAAGTTATCAAAAT
9060452 T
1 T
9060453 TACTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (27 bp):
TAAAATTATATCAAAAGTTATCAAAAT
Found at i:9060514 original size:79 final size:80
Alignment explanation
Indices: 9060426--9060575 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 80
9060416 TATTGAAATT
* * * *
9060426 AAAATTATATCAAAAGTTATCAAAATTTACTTATAGTATA-AAAA-TACAAATTAAATTATTAGT
1 AAAAGTATATAAAAAATTATCAAAATTTACCTATAGTATACAAAACTA-AAATTAAATTATTAGT
9060489 ATTTATCGTTATTTTC
65 ATTTATCGTTATTTTC
* * *
9060505 AAAAGTATATAAAAAATTATCAAATTTTACCTATATTATACCAAAACTAAAATTAAATTGTTAGT
1 AAAAGTATATAAAAAATTATCAAAATTTACCTATAGTATA-CAAAACTAAAATTAAATTATTAGT
9060570 ATTTAT
65 ATTTAT
9060576 AACTATTATT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 34 0.56
81 25 0.41
82 2 0.03
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (80 bp):
AAAAGTATATAAAAAATTATCAAAATTTACCTATAGTATACAAAACTAAAATTAAATTATTAGTA
TTTATCGTTATTTTC
Found at i:9060567 original size:871 final size:850
Alignment explanation
Indices: 9058246--9061482 Score: 2982
Period size: 871 Copynumber: 3.8 Consensus size: 850
9058236 ACTTAAATAT
* * * *
9058246 TGAAGGGATCTTCAACCATTATTTTTTATGAAAAATATTATCTTTCATTTTAAGAATTATTATGA
1 TGAAGGGATTTTCAACAATTATTTTTTATGAAGAATATTATCTTTGATTTTAAGAATTATTATGA
* * * *
9058311 AAATACCTATGCAAAGAAATATTTTCTAAATTTTG-CTTAGATATTAAAAAATTT-TAAAA-A--
66 AAATACCTAAGCAGAGAAATATTTTCTAAATTTTGCCTTAGATATTAAAATATTTAGAAAATATC
* * * *
9058371 T--G----A--T------TCG---AAATAAAATATTTTCATTTTATTT-TAAATAAAATAATTCT
131 TAGGCAAAATTTAAAAAATGGTTTTAATAAAAAATTTTCATTTTATTTCTAAATAAAGTAATTCT
* * * *
9058418 AAAAATGATGGCAAAAAATTAATACTAAAAGAAAACATGTGATTAATTAGTGA-TGTTGTTAAAA
196 AAAAA-GATGGCAAAAAATCAATACTAAAAGATAATATGTGATTAATTAGT-ATTATTGTTAAAA
* * * * *** * * **
9058482 CAAGCGTTGTGAGATGTTAATTC-TTCTTCACACATAATTATACTTTTGAATCTAATTTTATTTT
259 TAAG-ATTATGAGATGATAA-TCATTC-TCATGTATAATTGTA-TTTT-AAAC-CCTTTT-TTTT
* * * * *
9058546 TTGTAGACTAAAAATTATTTTTTAATAAATTTAAAGATTTTATTAAAAAAATTTTATAAAAAATT
317 TTGCAAAATAAAAATTA-TTTTTAATAAATTTTAAGA--TTATT--AAAAA-TTTATTAAAAATT
* * * * * * * *
9058611 ATTAAAATTGTGT-ACATGATTATCAAAATTGTATAATAAATTACCAAACTAATATCGAGTGTTA
376 ATTAAAATT-TATCA-AT--TTACCAAAATTATATCATAAGTTATCAAACTAATATCAAATGTTA
* * * *
9058675 CCAAAATTGTA-T---AG-------AA----ATC------TGTCGAAATTAAAATTATATAAAAA
437 CCAAAATTGTATTGAAAGTTACTAAAATTTTATCAAAAGTTATTGAAATCAAAATTATATCAAAA
* * * * * * *
9058719 ATTATCAAATTTTACTTATAGCAAAAAAAATACAAATTAAATTGTTAGTTTTTATAATTATTTTA
502 GTTATCAAAATTTACTTATAG-TATAAAAATACAAATTAAATTGTTAGTATTTATCATTATTTTC
* * * * *
9058784 AAAAATATATAAAAAGTTATCAAAATTTACTTGTATTATACCAAAATTAAAAATAAATTATTAGC
566 AAAAGTATATAAAAAGTTATCAAAATTTACCTATATTATACCAAAATTAAAATTAAATTATTAGT
* * * * * *
9058849 ATTTATAATTATTATTGTCATAGCATTAAAAAAATTATTTATTGACATTAATTTTTAGAGATAAA
631 ATTTATAACTATTATTATCATAGTATCAAAAAAATTATTTATTGAGATGAATTTTTAGAGATAAA
* * * * *
9058914 AATTATATGTGCATCACACAAATGCTTAAAACTATTTGCATCACATGCACCTTTTAATTATAAAA
696 AATTATAAGTGCATCACAC--ATGCTTAAAACTAGTTGCATCACATGAACCTTTTTATTGT-AAA
* * *
9058979 AATATATAAAGTACTAGATGATGATTTTGAAAATTTG-T-TTTGTTTAGGAATAAAA-AAAATAA
758 AA-A-A-AAAGTACTAAATGATGATTTTGAAAATTTGTTATTTTTTTAGAAATAAAATAAAATAA
* *
9059041 TATCTTAAGTAAAATAATTCTTGAG-ACTCTA
820 TATTTTAAGTAAAATAATTATTGAGAAC-CTA
** * * * *
9059072 TTTA--GATATTGAACAATTATTTTTTATGAAGAATATTATTTTTTATTTTAA-AGATTATTATG
1 TGAAGGGATTTTCAACAATTATTTTTTATGAAGAATATTATCTTTGATTTTAAGA-ATTATTATG
* * ** *
9059134 AAAATACCTAAGCATAGAACTATTTTCTAAATTTCACC-TAAATATTGAAAAT-TTTAGAAAATA
65 AAAATACCTAAGCAGAGAAATATTTTCTAAATTTTGCCTTAGATATT-AAAATATTTAGAAAATA
* * * *
9059197 TCTAGGCAAAATTTAGAAAATGATTTGAAATAAAAAATTTT-ATTTTATTCCTAAATAAAGTAAT
129 TCTAGGCAAAATTTAAAAAATGGTTT-TAATAAAAAATTTTCATTTTATTTCTAAATAAAGTAAT
* * * * * **
9059261 TATATAAAA-AAGGTAAAAAATCAATACTAAAAAATAACATGCAATTAATTAGTATTATTGTTAA
193 TCTA-AAAAGATGGCAAAAAATCAATACTAAAAGATAATATGTGATTAATTAGTATTATTGTTAA
* * * * *
9059325 AACAAGTATTGTGAGAT-AGTAATTCTTTCTCATGTGTAATTGTATTCTTAAACCTATATTTTTT
257 AATAAG-ATTATGAGATGA-TAA-TCATTCTCATGTATAATTGTATT-TTAAACC-CT-TTTTTT
** * * * *
9059389 TTTGGTAAATCAAAATTTATTTTTAATAAATTTTAATGAATT-TTAAGATTTTATTAAAAAAT-T
316 TTTGCAAAAT-AAAAATTATTTTTAATAAATTTTAA-G-ATTATTAAAAATTTATTAAAAATTAT
* *
9059452 TATAA---A--AATTTATCAAAATTATATCATAAGTTATCAAACTAATATCAAATGTTACCAAAA
378 TAAAATTTATCAATTTACCAAAATTATATCATAAGTTATCAAACTAATATCAAATGTTACCAAAA
* * * * **
9059512 TTGAATCGAAAGTTACTAAAATTTTATCAAATGATATCAAAATCAAAATTATATCAAAAGTTATC
443 TTGTATTGAAAGTTACTAAAATTTTATCAAAAGTTATTGAAATCAAAATTATATCAAAAGTTATC
* * * *
9059577 AAATTTTACTTAGAGTTTAAAAA-AAAAATTAAATTGTTAGTATTTATCATTATTTTCAAAAGTA
508 AAAATTTACTTATAGTATAAAAATACAAATTAAATTGTTAGTATTTATCATTATTTTCAAAAGTA
* * *
9059641 TATAAAAAGTTATTAAAATTTACCTATATTATACCAAAATTAAAATTAAATTGTTAGTCTTTATA
573 TATAAAAAGTTATCAAAATTTACCTATATTATACCAAAATTAAAATTAAATTATTAGTATTTATA
*
9059706 ACTATTATTATCATAGTATCAAAAAATTGTTAGTATTAAAATTGAGATGAATTTTTAGAGATAAA
638 ACTATTATTATCATAGTATCAAAAAA--ATTA-T-TT---ATTGAGATGAATTTTTAGAGATAAA
* * * * *
9059771 ACTTGTAAGTGCATCACACGTGCTTAAAACTAGTTACATCACGTGAACCTTTTTATTGTAAAAAA
696 AATTATAAGTGCATCACACATGCTTAAAACTAGTTGCATCACATGAACCTTTTTATTGTAAAAAA
9059836 AAAAGTACTTAAATGATGATTTTGAAAATTTGTTATTTCTTTTAGAAATAAAATAAAATAATATT
761 AAAAGTAC-TAAATGATGATTTTGAAAATTTGTTATTT-TTTTAGAAATAAAATAAAATAATATT
*
9059901 TTAAGTAAATTAATTATTGAGAACCTA
824 TTAAGTAAAATAATTATTGAGAACCTA
9059928 CTGAAGGGATTTTCAACAATTATTTTTTATGAAGAATATTATCTTTGATTTTAAGAATTATTATG
1 -TGAAGGGATTTTCAACAATTATTTTTTATGAAGAATATTATCTTTGATTTTAAGAATTATTATG
* * *
9059993 AAAATACCTAAGGAGAGAAATAATTTT-TAATTTTTGCCTTAGATATTAAAATATTTAAAAAATA
65 AAAATACCTAAGCAGAGAAAT-ATTTTCTAAATTTTGCCTTAGATATTAAAATATTTAGAAAATA
* * * * *
9060057 TCTAGGTAAATTTTAAAAAATGGTTCTTAATAAAAATTTTTCATTTTATTTCAAAACAAAGTAAT
129 TCTAGGCAAAATTTAAAAAATGGTT-TTAATAAAAAATTTTCATTTTATTTCTAAATAAAGTAAT
* * * * *
9060122 TCTAAAAGAGATGGCAAAAAATCAATATTAAAAGATAATATATGACTAATT-GATACTATTATTA
193 TCTAAAA-AGATGGCAAAAAATCAATACTAAAAGATAATATGTGATTAATTAG-TATTATTGTTA
* *
9060186 AAATAAGCATTATGAGATGATAATCATTCATCATGTATAATCGTACTTTTGAACCCTTTTTTTTT
256 AAATAAG-ATTATGAGATGATAATCATTC-TCATGTATAATTGTA-TTTTAAACCCTTTTTTTTT
** * * *
9060251 CACAAAATAAAAACTATTTTTAATAAACTTTAAGATTTTATTGAAAAAAATTA-TAAAAATTATT
318 TGCAAAATAAAAATTATTTTTAATAAATTTTAAGA--TTATT--AAAAATTTATTAAAAATTATT
* * *
9060315 AAAATTGTATCAATGGTTACCAAAATTATATTATAGGTTACCAAACTAATATCAAATGTTACCAA
379 AAAATT-TATCAAT--TTACCAAAATTATATCATAAGTTATCAAACTAATATCAAATGTTACCAA
* *
9060380 AATTGTATTGAAAATTACTAAAATTTTATCAAAAGTTATTGAAATTAAAATTATATCAAAAGTTA
441 AATTGTATTGAAAGTTACTAAAATTTTATCAAAAGTTATTGAAATCAAAATTATATCAAAAGTTA
* *
9060445 TCAAAATTTACTTATAGTATAAAAATACAAATTAAATTATTAGTATTTATCGTTATTTTCAAAAG
506 TCAAAATTTACTTATAGTATAAAAATACAAATTAAATTGTTAGTATTTATCATTATTTTCAAAAG
* * * *
9060510 TATATAAAAAATTATCAAATTTTACCTATATTATACCAAAACTAAAATTAAATTGTTAGTATTTA
571 TATATAAAAAGTTATCAAAATTTACCTATATTATACCAAAATTAAAATTAAATTATTAGTATTTA
* *
9060575 TAACTATTATTATCATAGCT-TCAAAAAAATTATTTGTGGAGATGAATTTTTAGAGATAAAAATT
636 TAACTATTATTATCATAG-TATCAAAAAAATTATTTATTGAGATGAATTTTTAGAGATAAAAATT
* * *
9060639 ATACATGTGC--CACACATG-TATCTAAATTAGTTGCATCACAT-ATACCTTCTTATTGTAAAAA
700 ATA-A-GTGCATCACACATGCT-T-AAAACTAGTTGCATCACATGA-ACCTTTTTATTGTAAAAA
* *
9060700 AAAAAGTACTAAATGATGATTTTGAAAATTTGTTATTTTTTATAAAAATAAAATAAAA-AATGTT
760 AAAAAGTACTAAATGATGATTTTGAAAATTTGTTATTTTTT-TAGAAATAAAATAAAATAATATT
* *
9060764 TTAAGTAAAATAATTATTAAGATCCTA
824 TTAAGTAAAATAATTATTGAGAACCTA
* * * * *
9060791 TTTAGATATTGAAAGGATTTCCAATAACTATTTTTTATGAAAAATATTATCTTTGATTTTAAGGA
1 --T-GA-A--G---GGATTTTCAACAATTATTTTTTATGAAGAATATTATCTTTGATTTTAAGAA
* ** *
9060856 TTATTATGAAAATACTTAAATAGAGAAATATTTTCTAAATTTTG-CTTAGATATTGAAA-ATTTA
57 TTATTATGAAAATACCTAAGCAGAGAAATATTTTCTAAATTTTGCCTTAGATATTAAAATATTTA
* ** **
9060919 GAAAATATCTAGACAAAATTTAAAAGTTGG--TTAA-AAAAAAAGTTCATTTTA-TTCTTAAATA
122 GAAAATATCTAGGCAAAATTTAAAAAATGGTTTTAATAAAAAATTTTCATTTTATTTC-TAAATA
* * * *
9060980 AAGTAATTCTAAAACAGGTGGCAAAAATTCAATACTAAATGAAAATATGTGATTAATTAGTATTA
186 AAGTAATTCTAAAA-AGATGGCAAAAAATCAATACTAAAAGATAATATGTGATTAATTAGTATTA
* * * *
9061045 TTGTTAAAATATATG-TTATGAGATGTTAAT-ATTTTTTCACGTATAATTATATTTTCAAACCCA
250 TTGTTAAAATA-A-GATTATGAGATGATAATCA--TTCTCATGTATAATTGTATTTT-AAACCC-
* * * ** * *
9061108 ATTTTATTTTTTTGTAGACTAAGGATTATTTTTTAAATAAATTTTAAG-TAATTTAAAGATTTAT
309 --TTT-TTTTTTTGCAAAATAAAAATTA-TTTTT-AATAAATTTTAAGATTA-TTAAAAATTTAT
* * *
9061172 TAAAAATTTTTTATAAAAATTATATCAATAATTACGAAAATTATATCATAAATTATCAAACTAAT
368 TAAAAA----TTATTAAAATT-TATCAAT--TTACCAAAATTATATCATAAGTTATCAAACTAAT
** * * * * *
9061237 ATTGAATGTTA-TAAAAGT-TACATGAAATGTTACTAAAATTTTATAAAAAATTATTGAAATCAA
426 ATCAAATGTTACCAAAATTGTA-TTGAAA-GTTACTAAAATTTTATCAAAAGTTATTGAAATCAA
*
9061300 AATTATATCAAAAGTTAT-AAAATTTTA-TTATAGTATAAAAATACAAATTAAATTGTTAATATT
489 AATTATATCAAAAGTTATCAAAA-TTTACTTATAGTATAAAAATACAAATTAAATTGTTAGTATT
* * * *
9061363 TATCATTATTTTCAAATGTATATAGAAAGTTATCAAATTTTACCTATGTTATACCAAAATTAAAA
553 TATCATTATTTTCAAAAGTATATAAAAAGTTATCAAAATTTACCTATATTATACCAAAATTAAAA
* * *
9061428 TTAAATTATTAATATTTATAACTATTATTATCATAATAT-TAAAAAATTATTTATT
618 TTAAATTATTAGTATTTATAACTATTATTATCATAGTATCAAAAAAATTATTTATT
9061483 AAAATAGAAT
Statistics
Matches: 1992, Mismatches: 280, Indels: 234
0.79 0.11 0.09
Matches are distributed among these distances:
823 1 0.00
824 91 0.05
825 9 0.00
826 3 0.00
828 1 0.00
830 1 0.00
831 49 0.02
833 2 0.00
834 2 0.00
835 2 0.00
836 1 0.00
839 5 0.00
840 11 0.01
841 3 0.00
842 3 0.00
843 2 0.00
844 35 0.02
845 97 0.05
846 35 0.02
847 4 0.00
850 116 0.06
851 12 0.01
852 66 0.03
853 3 0.00
854 10 0.01
855 45 0.02
856 32 0.02
857 44 0.02
858 1 0.00
859 107 0.05
860 73 0.04
861 39 0.02
862 89 0.04
863 36 0.02
864 90 0.05
865 157 0.08
866 14 0.01
867 10 0.01
868 16 0.01
869 48 0.02
870 163 0.08
871 355 0.18
872 109 0.05
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.40
Consensus pattern (850 bp):
TGAAGGGATTTTCAACAATTATTTTTTATGAAGAATATTATCTTTGATTTTAAGAATTATTATGA
AAATACCTAAGCAGAGAAATATTTTCTAAATTTTGCCTTAGATATTAAAATATTTAGAAAATATC
TAGGCAAAATTTAAAAAATGGTTTTAATAAAAAATTTTCATTTTATTTCTAAATAAAGTAATTCT
AAAAAGATGGCAAAAAATCAATACTAAAAGATAATATGTGATTAATTAGTATTATTGTTAAAATA
AGATTATGAGATGATAATCATTCTCATGTATAATTGTATTTTAAACCCTTTTTTTTTTGCAAAAT
AAAAATTATTTTTAATAAATTTTAAGATTATTAAAAATTTATTAAAAATTATTAAAATTTATCAA
TTTACCAAAATTATATCATAAGTTATCAAACTAATATCAAATGTTACCAAAATTGTATTGAAAGT
TACTAAAATTTTATCAAAAGTTATTGAAATCAAAATTATATCAAAAGTTATCAAAATTTACTTAT
AGTATAAAAATACAAATTAAATTGTTAGTATTTATCATTATTTTCAAAAGTATATAAAAAGTTAT
CAAAATTTACCTATATTATACCAAAATTAAAATTAAATTATTAGTATTTATAACTATTATTATCA
TAGTATCAAAAAAATTATTTATTGAGATGAATTTTTAGAGATAAAAATTATAAGTGCATCACACA
TGCTTAAAACTAGTTGCATCACATGAACCTTTTTATTGTAAAAAAAAAAGTACTAAATGATGATT
TTGAAAATTTGTTATTTTTTTAGAAATAAAATAAAATAATATTTTAAGTAAAATAATTATTGAGA
ACCTA
Found at i:9064094 original size:42 final size:44
Alignment explanation
Indices: 9064033--9064121 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 44
9064023 AAAAGAAAAA
* * * *
9064033 CATGAAAGAAAAGATAACCTAAGCTTCAGACGTAGGGTTGATTG
1 CATGAAAGAAAAGAAAACCTAAGCATCACACCTAGGGTTGATTG
*
9064077 CATG-AAG-AAAGAAAACCTAGGCATCACACCTAGGGTTGATTG
1 CATGAAAGAAAAGAAAACCTAAGCATCACACCTAGGGTTGATTG
9064119 CAT
1 CAT
9064122 CACACAATCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 33 0.82
43 3 0.08
44 4 0.10
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (44 bp):
CATGAAAGAAAAGAAAACCTAAGCATCACACCTAGGGTTGATTG
Found at i:9066248 original size:2 final size:2
Alignment explanation
Indices: 9066241--9066275 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9066231 ATCTAACATC
9066241 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9066276 CAGGGAACGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9076618 original size:2 final size:2
Alignment explanation
Indices: 9076611--9076635 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9076601 TGGCTATTTT
9076611 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
9076636 TTTTTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9082668 original size:32 final size:32
Alignment explanation
Indices: 9082594--9082668 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
9082584 CTCTTATTTG
*
9082594 AATCAGGACCATTTGTAAAACTACAACATTAA
1 AATCAGGACCTTTTGTAAAACTACAACATTAA
* * * *
9082626 AATCAGGACCTTTTGTACAATTATAACATTCA
1 AATCAGGACCTTTTGTAAAACTACAACATTAA
9082658 AATCAGGACCT
1 AATCAGGACCT
9082669 CAACTTTAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (32 bp):
AATCAGGACCTTTTGTAAAACTACAACATTAA
Found at i:9087168 original size:2 final size:2
Alignment explanation
Indices: 9087161--9087189 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9087151 ATTAAACATT
9087161 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9087190 GTTTTCTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9088084 original size:2 final size:2
Alignment explanation
Indices: 9088077--9088101 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9088067 TCATTTGCAA
9088077 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
9088102 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9089278 original size:28 final size:28
Alignment explanation
Indices: 9089225--9089279 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
9089215 GAATGTAATT
*
9089225 TTCTTTTTTATTCTTTTCATCAAGTAAC
1 TTCTTTTTTATTCTTGTCATCAAGTAAC
9089253 TTCTTTTTT-TGTCTTCGTCATC-AGTAA
1 TTCTTTTTTAT-TCTT-GTCATCAAGTAA
9089280 AATGCACTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 1 0.04
28 18 0.75
29 5 0.21
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.56
Consensus pattern (28 bp):
TTCTTTTTTATTCTTGTCATCAAGTAAC
Found at i:9090325 original size:2 final size:2
Alignment explanation
Indices: 9090320--9090349 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9090310 ACACACACAC
*
9090320 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9090350 GGCACATAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9092519 original size:18 final size:17
Alignment explanation
Indices: 9092496--9092542 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
9092486 ACTTAACTTT
9092496 AATTAAACAAAAAAATGC
1 AATTAAACAAAAAAAT-C
* *
9092514 AATTAAA-AATAAAATT
1 AATTAAACAAAAAAATC
9092530 AATTATAACAAAA
1 AATTA-AACAAAA
9092543 TTTTAATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.21
17 9 0.38
18 10 0.42
ACGTcount: A:0.68, C:0.06, G:0.02, T:0.23
Consensus pattern (17 bp):
AATTAAACAAAAAAATC
Found at i:9097062 original size:23 final size:22
Alignment explanation
Indices: 9097012--9097062 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
9097002 TAGATATCCC
* * *
9097012 AACAAATTTTCTAAATAAATTT
1 AACAATTTTTCCAAACAAATTT
*
9097034 ATCAATTTTTCCAAACAAGATTT
1 AACAATTTTTCCAAACAA-ATTT
9097057 AACAAT
1 AACAAT
9097063 ATCAAGAAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (22 bp):
AACAATTTTTCCAAACAAATTT
Found at i:9103699 original size:19 final size:19
Alignment explanation
Indices: 9103660--9103725 Score: 50
Period size: 19 Copynumber: 3.5 Consensus size: 19
9103650 ATAATTTTAT
9103660 ATTAAATTTATT-TA-AATAA
1 ATTAAATTT-TTATATAA-AA
9103679 ATTAAATTTTTATATAAAA
1 ATTAAATTTTTATATAAAA
* * *
9103698 A-T-AATATCTAAATTAAAA
1 ATTAAATTTTTATA-TAAAA
9103716 ATTAAATTTT
1 ATTAAATTTT
9103726 AAAAATTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
17 7 0.19
18 9 0.24
19 15 0.41
20 6 0.16
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTAAATTTTTATATAAAA
Found at i:9103798 original size:31 final size:30
Alignment explanation
Indices: 9103749--9103808 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
9103739 CTAAACTAAA
*
9103749 TTAAATCAAATCAATAAAATTTAATTTAAT
1 TTAAATAAAATCAATAAAATTTAATTTAAT
*
9103779 TTAAATAAAATTATATAAAATTTAATTTAA
1 TTAAATAAAATCA-ATAAAATTTAATTTAA
9103809 AATTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
TTAAATAAAATCAATAAAATTTAATTTAAT
Found at i:9103824 original size:31 final size:29
Alignment explanation
Indices: 9103762--9103825 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 29
9103752 AATCAAATCA
9103762 ATAAAATTTAATTTAATTTAAATAAAATTAT
1 ATAAAATTTAATTTAATTT--ATAAAATTAT
9103793 ATAAAATTTAATTTAAAATTT-TAAAATT-T
1 ATAAAATTTAATTT--AATTTATAAAATTAT
9103822 ATAA
1 ATAA
9103826 TATTATATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
29 5 0.16
30 7 0.23
31 14 0.45
33 5 0.16
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (29 bp):
ATAAAATTTAATTTAATTTATAAAATTAT
Found at i:9114801 original size:28 final size:29
Alignment explanation
Indices: 9114749--9114804 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
9114739 GGTGTCTTCG
*
9114749 TTGCCTGGGGAAGGGGTGAGAAAAAAAAA
1 TTGCCTGGGAAAGGGGTGAGAAAAAAAAA
*
9114778 TTGCCTGGGAAAGGGTTGAGAAAAAAA
1 TTGCCTGGGAAAGGGGTGAGAAAAAAA
9114805 TAAAGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.36, T:0.16
Consensus pattern (29 bp):
TTGCCTGGGAAAGGGGTGAGAAAAAAAAA
Found at i:9114945 original size:10 final size:10
Alignment explanation
Indices: 9114932--9114974 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
9114922 TTTAACTGAA
9114932 TTATATATTT
1 TTATATATTT
9114942 TTAT-TAATTT
1 TTATAT-ATTT
9114952 TTATATATTT
1 TTATATATTT
9114962 TTA-A-ATTT
1 TTATATATTT
9114970 TTATA
1 TTATA
9114975 AAATAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.23
9 3 0.10
10 19 0.63
11 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTATATATTT
Found at i:9114968 original size:18 final size:19
Alignment explanation
Indices: 9114932--9114974 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
9114922 TTTAACTGAA
9114932 TTATATATTTTTATTAATTT
1 TTATATATTTTTA-TAATTT
9114952 TTATATATTTTTA-AATTT
1 TTATATATTTTTATAATTT
9114970 TTATA
1 TTATA
9114975 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
20 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATATATTTTTATAATTT
Found at i:9115022 original size:19 final size:19
Alignment explanation
Indices: 9115000--9115036 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9114990 TTTTATATCA
*
9115000 AAATTTATTTAAATAAATT
1 AAATTTATATAAATAAATT
*
9115019 AAATTTATATATATAAAT
1 AAATTTATATAAATAAAT
9115037 AATATATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATTTATATAAATAAATT
Found at i:9122455 original size:18 final size:17
Alignment explanation
Indices: 9122432--9122478 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
9122422 ACTTAACTTT
9122432 AATTAAACAAAAAAATGC
1 AATTAAACAAAAAAAT-C
* *
9122450 AATTAAA-AATAAAATT
1 AATTAAACAAAAAAATC
9122466 AATTATAACAAAA
1 AATTA-AACAAAA
9122479 TTTTAATGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.21
17 9 0.38
18 10 0.42
ACGTcount: A:0.68, C:0.06, G:0.02, T:0.23
Consensus pattern (17 bp):
AATTAAACAAAAAAATC
Found at i:9123784 original size:35 final size:35
Alignment explanation
Indices: 9123739--9123808 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
9123729 AATTGAAAGA
*
9123739 GAATGAAAGATGATGATTAGTAAATTTATTTTTAT
1 GAATAAAAGATGATGATTAGTAAATTTATTTTTAT
9123774 GAATAAAAGATGATGATTAGTAAATTTATTTTTAT
1 GAATAAAAGATGATGATTAGTAAATTTATTTTTAT
9123809 AAGTGTTCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (35 bp):
GAATAAAAGATGATGATTAGTAAATTTATTTTTAT
Found at i:9123849 original size:13 final size:13
Alignment explanation
Indices: 9123831--9123856 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9123821 TGTATAAGTA
9123831 TTAATTTAAGTTG
1 TTAATTTAAGTTG
9123844 TTAATTTAAGTTG
1 TTAATTTAAGTTG
9123857 AATAAGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAATTTAAGTTG
Found at i:9131365 original size:13 final size:13
Alignment explanation
Indices: 9131334--9131372 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
9131324 GCGTTTCTCC
*
9131334 AGAAAAAAAAAAA
1 AGAAAAAAAAAGA
*
9131347 AAAAAAAAAAAGA
1 AGAAAAAAAAAGA
*
9131360 AGAAAACAAAAGA
1 AGAAAAAAAAAGA
9131373 TTAATGATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAAAGA
Found at i:9132651 original size:13 final size:13
Alignment explanation
Indices: 9132633--9132658 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9132623 TTCATTCAGA
9132633 TTAAATTTAAATT
1 TTAAATTTAAATT
9132646 TTAAATTTAAATT
1 TTAAATTTAAATT
9132659 GAATTTTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAAATTTAAATT
Found at i:9132719 original size:10 final size:10
Alignment explanation
Indices: 9132706--9132739 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
9132696 TTTAACTGAA
9132706 TTATATATTT
1 TTATATATTT
9132716 TTATATATTT
1 TTATATATTT
*
9132726 TT-TAAATTT
1 TTATATATTT
9132735 TTATA
1 TTATA
9132740 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTATATATTT
Found at i:9138593 original size:81 final size:78
Alignment explanation
Indices: 9138455--9138714 Score: 356
Period size: 70 Copynumber: 3.3 Consensus size: 78
9138445 TAGCTTGATT
*
9138455 TGAAAATTAACAATTGGAACCAATATAGTCGGTGCCAATAAATTTGACTTGGCTTGGTGGTACAA
1 TGAAAATTAACAATTGGAACC-A-ATAGTCGGTGCCAATAAATTTGACTTGGCTTGGTGGTA-AG
9138520 AAATCTTGTATTAAAG
63 AAATCTTGTATTAAAG
* *
9138536 TGAAAATTCTAACAATTGGAACCAATAGTCGATGCCAATAAATTTGACTTGGTTTGGTGGTAAGA
1 TGAAAA-T-TAACAATTGGAACCAATAGTCGGTGCCAATAAATTTGACTTGGCTTGGTGGTAAGA
9138601 AATCTTGTATTAAAG
64 AATCTTGTATTAAAG
* *
9138616 TG------AA-AATTGAAACCAATAGTCGGTG-GAATAAATTTGACTTGGCTTGGTGGTAAGAAA
1 TGAAAATTAACAATTGGAACCAATAGTCGGTGCCAATAAATTTGACTTGGCTTGGTGGTAAGAAA
9138673 TCTTGTATTAAAG
66 TCTTGTATTAAAG
9138686 TGAAAATTCTAACAATTGGAACCAATAGT
1 TGAAAA-T-TAACAATTGGAACCAATAGT
9138715 AAAAGCAGCC
Statistics
Matches: 160, Mismatches: 8, Indels: 24
0.83 0.04 0.12
Matches are distributed among these distances:
70 45 0.28
71 19 0.12
72 2 0.01
78 2 0.01
79 15 0.09
80 19 0.12
81 42 0.26
82 2 0.01
83 14 0.09
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (78 bp):
TGAAAATTAACAATTGGAACCAATAGTCGGTGCCAATAAATTTGACTTGGCTTGGTGGTAAGAAA
TCTTGTATTAAAG
Found at i:9144801 original size:4 final size:4
Alignment explanation
Indices: 9144792--9144838 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
9144782 GCTCTCTTGG
9144792 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
9144839 TATATATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:9149256 original size:7 final size:7
Alignment explanation
Indices: 9149244--9149284 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
9149234 AATTTATGAA
9149244 TTTTAAT
1 TTTTAAT
9149251 TTTTAA-
1 TTTTAAT
9149257 TTTTAAT
1 TTTTAAT
9149264 TTTT-AT
1 TTTTAAT
*
9149270 TTAATAAT
1 TT-TTAAT
9149278 TTTTAAT
1 TTTTAAT
9149285 AAATATTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
6 10 0.34
7 15 0.52
8 4 0.14
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTTAAT
Found at i:9149260 original size:13 final size:13
Alignment explanation
Indices: 9149242--9149284 Score: 61
Period size: 13 Copynumber: 3.2 Consensus size: 13
9149232 TCAATTTATG
9149242 AATTTTAATTTTT
1 AATTTTAATTTTT
9149255 AATTTTAATTTTT
1 AATTTTAATTTTT
9149268 -ATTTAATAATTTTT
1 AATTT--TAATTTTT
9149282 AAT
1 AAT
9149285 AAATATTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.15
13 13 0.48
14 8 0.30
15 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
AATTTTAATTTTT
Found at i:9149316 original size:14 final size:13
Alignment explanation
Indices: 9149297--9149329 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
9149287 ATATTTGCAT
9149297 GAACTTTACTTTAA
1 GAACTTTA-TTTAA
9149311 GAACTTTATTTAA
1 GAACTTTATTTAA
9149324 -AACTTT
1 GAACTTT
9149330 TCCTAAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 5 0.26
14 8 0.42
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.45
Consensus pattern (13 bp):
GAACTTTATTTAA
Found at i:9158081 original size:15 final size:14
Alignment explanation
Indices: 9158053--9158079 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9158043 ATGCGATTCA
9158053 AAATTTTTAAAAAT
1 AAATTTTTAAAAAT
9158067 AAATTTTTAAAAA
1 AAATTTTTAAAAA
9158080 ATTTTAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTTTTAAAAAT
Found at i:9158465 original size:5 final size:6
Alignment explanation
Indices: 9158449--9158496 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
9158439 TATTTATAAT
* *
9158449 TAAAAA TAAAAA TAAAAA TAAAAA T-AGAC TAAAATA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAA-A TAAAAA TAAAAA
9158497 ATATTTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
5 3 0.08
6 28 0.78
7 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:9165052 original size:14 final size:15
Alignment explanation
Indices: 9165033--9165065 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9165023 CAAATATTTG
*
9165033 AACATTTG-ACCTTA
1 AACATTTGAACCCTA
9165047 AACATTTGAACCCTA
1 AACATTTGAACCCTA
9165062 AACA
1 AACA
9165066 AAATTTAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (15 bp):
AACATTTGAACCCTA
Found at i:9170527 original size:56 final size:56
Alignment explanation
Indices: 9170465--9170577 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
9170455 TGCCACATTG
** *
9170465 AAATAAAATTGGCCATGTTATGTGCCATATGTTTATTAAATGCCACATGTAATTCA
1 AAATAAAATTGGCCACATCATGTGCCATATGTTTATTAAATGCCACATGTAATTCA
9170521 AAATAAAATTGGCCACATCATGTGCCATATGTTTATTAAATGCCACATGTAATTCA
1 AAATAAAATTGGCCACATCATGTGCCATATGTTTATTAAATGCCACATGTAATTCA
9170577 A
1 A
9170578 CTTAACAATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (56 bp):
AAATAAAATTGGCCACATCATGTGCCATATGTTTATTAAATGCCACATGTAATTCA
Found at i:9175153 original size:8 final size:8
Alignment explanation
Indices: 9175140--9175169 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
9175130 AAACATGATC
9175140 CGGTGACA
1 CGGTGACA
9175148 CGGTGACA
1 CGGTGACA
*
9175156 CGGTAACA
1 CGGTGACA
9175164 CGGTGA
1 CGGTGA
9175170 GACAATACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.27, C:0.23, G:0.37, T:0.13
Consensus pattern (8 bp):
CGGTGACA
Found at i:9183432 original size:27 final size:27
Alignment explanation
Indices: 9183402--9183461 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
9183392 AAAGAAATGA
*
9183402 TTTATTATATTAT-TTTTTATTATAACT
1 TTTATAAT-TTATGTTTTTATTATAACT
*
9183429 TTTATAATTTTTGTTTTTATTATAA-T
1 TTTATAATTTATGTTTTTATTATAACT
9183455 ATTTATA
1 -TTTATA
9183462 TGTTTATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (27 bp):
TTTATAATTTATGTTTTTATTATAACT
Found at i:9183465 original size:22 final size:23
Alignment explanation
Indices: 9183440--9183493 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
9183430 TTATAATTTT
9183440 TGTTTTTATTATA-ATATTT-ATA
1 TGTTTTTATTA-ACATATTTAATA
* *
9183462 TGTTTATATTAACGTATTTAATA
1 TGTTTTTATTAACATATTTAATA
9183485 T-TTTTTATT
1 TGTTTTTATT
9183494 TTTTTATACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 22 0.81
23 4 0.15
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.63
Consensus pattern (23 bp):
TGTTTTTATTAACATATTTAATA
Found at i:9190276 original size:22 final size:24
Alignment explanation
Indices: 9190234--9190286 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
9190224 AAAATTTAAT
9190234 TTTTTATATATTAATTTAATAGAA
1 TTTTTATATATTAATTTAATAGAA
*
9190258 TTTTTA-ATA-TATTTTAATAG-A
1 TTTTTATATATTAATTTAATAGAA
*
9190279 TTTATATA
1 TTTTTATA
9190287 AGAAATAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 6 0.23
22 11 0.42
23 3 0.12
24 6 0.23
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTTATATATTAATTTAATAGAA
Found at i:9191060 original size:13 final size:13
Alignment explanation
Indices: 9191042--9191066 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9191032 GTTTATTAAA
9191042 TTTTATATAATTT
1 TTTTATATAATTT
9191055 TTTTATATAATT
1 TTTTATATAATT
9191067 ACGTTTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTATATAATTT
Found at i:9192860 original size:30 final size:29
Alignment explanation
Indices: 9192826--9192923 Score: 94
Period size: 30 Copynumber: 3.3 Consensus size: 29
9192816 ATATTAAATT
9192826 TTATATATTTATTTAATATTTTATATAAAA
1 TTATATATTTATTT-ATATTTTATATAAAA
*
9192856 TTATATATTATAATTTATA-TTAATATAAAA
1 TTATATATT-T-ATTTATATTTTATATAAAA
* *
9192886 TATAATATATATTTTTTA-ATTTTAT-TAAAT
1 T-T-ATATAT-TTATTTATATTTTATATAAAA
9192916 TTATATAT
1 TTATATAT
9192924 AATAATTATT
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
28 6 0.10
29 1 0.02
30 26 0.45
31 13 0.22
32 11 0.19
33 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
TTATATATTTATTTATATTTTATATAAAA
Found at i:9192863 original size:32 final size:31
Alignment explanation
Indices: 9192816--9192924 Score: 102
Period size: 32 Copynumber: 3.5 Consensus size: 31
9192806 TTCAAGTAAA
* *
9192816 ATATTAAATTTTATATATTTATTTAATATTTT
1 ATATAAAATTATATATATTTATTT-ATATTTT
* *
9192848 ATATAAAATTATATAT-TATAATTTATA-TTA
1 ATATAAAATTATATATAT-TTATTTATATTTT
9192878 ATATAAAATATAATATATATTT-TTTA-ATTTT
1 ATATAAAAT-T-ATATATATTTATTTATATTTT
*
9192909 AT-TAAATTTATATATA
1 ATATAAAATTATATATA
9192925 ATAATTATTA
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
28 7 0.11
29 1 0.02
30 17 0.26
31 13 0.20
32 26 0.40
33 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (31 bp):
ATATAAAATTATATATATTTATTTATATTTT
Found at i:9193513 original size:21 final size:21
Alignment explanation
Indices: 9193472--9193515 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
9193462 ATTTATTATA
*
9193472 TATATTTTATATTTAATTTTT
1 TATATTTTATATTAAATTTTT
* *
9193493 TATATTTTA-GTTAAATGTTT
1 TATATTTTATATTAAATTTTT
9193513 TAT
1 TAT
9193516 TAATTTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (21 bp):
TATATTTTATATTAAATTTTT
Found at i:9197566 original size:2 final size:2
Alignment explanation
Indices: 9197561--9197587 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9197551 TTTTATTCTT
9197561 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
9197588 TCAAGGTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9205351 original size:2 final size:2
Alignment explanation
Indices: 9205344--9205374 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
9205334 TTCTTCTGTT
*
9205344 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9205375 TAAATGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:9205962 original size:2 final size:2
Alignment explanation
Indices: 9205955--9205989 Score: 52
Period size: 2 Copynumber: 17.0 Consensus size: 2
9205945 TGCATTTGTG
*
9205955 AT AT AT AT AT AT AT AT AT AT AT AT CAC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
9205990 TATTTAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 29 0.97
3 1 0.03
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:9209158 original size:29 final size:30
Alignment explanation
Indices: 9209072--9209159 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 30
9209062 AATGTTATGA
*
9209072 ATAATGTTTAAATTATAATAAAATATTTAAT
1 ATAATGTTTAAATTATAA-AATATATTTAAT
* * * * *
9209103 GTATTATTTAAATT-TAAAATTTTTTTAAT
1 ATAATGTTTAAATTATAAAATATATTTAAT
*
9209132 ATAATGCTTAAATTAT-AAATATATTTAA
1 ATAATGTTTAAATTATAAAATATATTTAA
9209160 CTAATGTGAT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
29 29 0.66
30 4 0.09
31 11 0.25
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (30 bp):
ATAATGTTTAAATTATAAAATATATTTAAT
Found at i:9210697 original size:2 final size:2
Alignment explanation
Indices: 9210690--9210735 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
9210680 ATTATTATGC
9210690 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9210732 AT AT
1 AT AT
9210736 GAACATGGCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9211716 original size:4 final size:4
Alignment explanation
Indices: 9211707--9211737 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
9211697 AAGCTAGACA
9211707 TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TAT
9211738 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Found at i:9211742 original size:2 final size:2
Alignment explanation
Indices: 9211735--9211765 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9211725 TCTATCTATC
9211735 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9211766 CATGCATGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9212224 original size:3 final size:3
Alignment explanation
Indices: 9212216--9212251 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
9212206 TCTCTTGACC
9212216 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9212252 GCTCCCAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9214172 original size:1 final size:1
Alignment explanation
Indices: 9214166--9214190 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
9214156 AACAATAATG
9214166 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
9214191 CCTCCAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:9215371 original size:252 final size:252
Alignment explanation
Indices: 9214926--9215431 Score: 1012
Period size: 252 Copynumber: 2.0 Consensus size: 252
9214916 TAATGCAACT
9214926 ATCTTTCACTTGCTTTGGAATCTTGGTCCTCAAAACTAGAACTGTAAATTCTTCTAATCTGTAAC
1 ATCTTTCACTTGCTTTGGAATCTTGGTCCTCAAAACTAGAACTGTAAATTCTTCTAATCTGTAAC
9214991 TAATTAACCATGTAACTTCTTCTAAACAGAAGCCAAAAGAATACCATTCCACAGGATTGTGTGGC
66 TAATTAACCATGTAACTTCTTCTAAACAGAAGCCAAAAGAATACCATTCCACAGGATTGTGTGGC
9215056 AACATCCAAAAAATTCTAATTTAGCAGATCTACTACATTAACACCCTTGCCACATAGGTTTGACA
131 AACATCCAAAAAATTCTAATTTAGCAGATCTACTACATTAACACCCTTGCCACATAGGTTTGACA
9215121 GACAAAAAGCTGAGGACAACATTCTATAAAGGCACGTTTCTCAGCTACATGTATACA
196 GACAAAAAGCTGAGGACAACATTCTATAAAGGCACGTTTCTCAGCTACATGTATACA
9215178 ATCTTTCACTTGCTTTGGAATCTTGGTCCTCAAAACTAGAACTGTAAATTCTTCTAATCTGTAAC
1 ATCTTTCACTTGCTTTGGAATCTTGGTCCTCAAAACTAGAACTGTAAATTCTTCTAATCTGTAAC
9215243 TAATTAACCATGTAACTTCTTCTAAACAGAAGCCAAAAGAATACCATTCCACAGGATTGTGTGGC
66 TAATTAACCATGTAACTTCTTCTAAACAGAAGCCAAAAGAATACCATTCCACAGGATTGTGTGGC
9215308 AACATCCAAAAAATTCTAATTTAGCAGATCTACTACATTAACACCCTTGCCACATAGGTTTGACA
131 AACATCCAAAAAATTCTAATTTAGCAGATCTACTACATTAACACCCTTGCCACATAGGTTTGACA
9215373 GACAAAAAGCTGAGGACAACATTCTATAAAGGCACGTTTCTCAGCTACATGTATACA
196 GACAAAAAGCTGAGGACAACATTCTATAAAGGCACGTTTCTCAGCTACATGTATACA
9215430 AT
1 AT
9215432 TGCTTTGGGA
Statistics
Matches: 254, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
252 254 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29
Consensus pattern (252 bp):
ATCTTTCACTTGCTTTGGAATCTTGGTCCTCAAAACTAGAACTGTAAATTCTTCTAATCTGTAAC
TAATTAACCATGTAACTTCTTCTAAACAGAAGCCAAAAGAATACCATTCCACAGGATTGTGTGGC
AACATCCAAAAAATTCTAATTTAGCAGATCTACTACATTAACACCCTTGCCACATAGGTTTGACA
GACAAAAAGCTGAGGACAACATTCTATAAAGGCACGTTTCTCAGCTACATGTATACA
Found at i:9218478 original size:20 final size:19
Alignment explanation
Indices: 9218438--9218481 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
9218428 TTTTAGTCTC
*
9218438 TGTTCTGGTTTTTTTTCAT
1 TGTTTTGGTTTTTTTTCAT
*
9218457 TGTTTTGGTTTTCTTTTTAT
1 TGTTTTGGTTTT-TTTTCAT
9218477 TGTTT
1 TGTTT
9218482 CTACCTCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.05, C:0.07, G:0.16, T:0.73
Consensus pattern (19 bp):
TGTTTTGGTTTTTTTTCAT
Found at i:9220608 original size:56 final size:56
Alignment explanation
Indices: 9220547--9220662 Score: 214
Period size: 56 Copynumber: 2.1 Consensus size: 56
9220537 CATTAAAATA
* *
9220547 ATTCAACTACAAACAACAAGAAACGTAAAAAGGAATCAAGAATACCTCCGATATGG
1 ATTCAACTACAAACAACAACAAACGTAAAAAGGAATCAAGAATACCTCCAATATGG
9220603 ATTCAACTACAAACAACAACAAACGTAAAAAGGAATCAAGAATACCTCCAATATGG
1 ATTCAACTACAAACAACAACAAACGTAAAAAGGAATCAAGAATACCTCCAATATGG
9220659 ATTC
1 ATTC
9220663 GCACAAAGCC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.50, C:0.21, G:0.12, T:0.17
Consensus pattern (56 bp):
ATTCAACTACAAACAACAACAAACGTAAAAAGGAATCAAGAATACCTCCAATATGG
Found at i:9244999 original size:15 final size:15
Alignment explanation
Indices: 9244979--9245011 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9244969 GCCACCTAGG
9244979 CCACCACCATACATT
1 CCACCACCATACATT
*
9244994 CCACCACCGTACATT
1 CCACCACCATACATT
9245009 CCA
1 CCA
9245012 GAGTTCCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.48, G:0.03, T:0.18
Consensus pattern (15 bp):
CCACCACCATACATT
Found at i:9245618 original size:19 final size:17
Alignment explanation
Indices: 9245578--9245620 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
9245568 ATTCTATCAT
*
9245578 AAAAAAAAAAAATCCCCC
1 AAAAAAAAAAAAT-CCAC
*
9245596 AAAAGAAACAAAATCCAC
1 AAAA-AAAAAAAATCCAC
9245614 AAAAAAA
1 AAAAAAA
9245621 GCCCAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
19 8 0.36
ACGTcount: A:0.72, C:0.21, G:0.02, T:0.05
Consensus pattern (17 bp):
AAAAAAAAAAAATCCAC
Found at i:9247240 original size:23 final size:25
Alignment explanation
Indices: 9247213--9247258 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
9247203 ATTATATAAA
9247213 AAATTATTTT-TTTA-AT-TATTTTT
1 AAATT-TTTTATTTATATATATTTTT
9247236 AAATTTTTTATTTATATATATTT
1 AAATTTTTTATTTATATATATTT
9247259 ATATATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.20
23 9 0.45
24 2 0.10
25 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
AAATTTTTTATTTATATATATTTTT
Found at i:9249672 original size:30 final size:29
Alignment explanation
Indices: 9249636--9249693 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
9249626 ATTCAACACA
9249636 TTTTTGAA-AAATCTAAAATAATTTAAAAAT
1 TTTTTGAATAAATCTAAAA-AA-TTAAAAAT
*
9249666 TTTTTGAATAATTCTAAAAAATTAAAAA
1 TTTTTGAATAAATCTAAAAAATTAAAAA
9249694 GCTCAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 7 0.27
30 10 0.38
31 9 0.35
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (29 bp):
TTTTTGAATAAATCTAAAAAATTAAAAAT
Found at i:9249738 original size:36 final size:37
Alignment explanation
Indices: 9249682--9249758 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
9249672 AATAATTCTA
9249682 AAAAATTAAAAAGCTCAAAAAAATTCT-TAAAATTTT
1 AAAAATTAAAAAGCTCAAAAAAATTCTATAAAATTTT
*
9249718 AAAAA-TAAAAA-CATCTAAAAAAATTTTATAAAATTTT
1 AAAAATTAAAAAGC-TC-AAAAAAATTCTATAAAATTTT
9249755 AAAA
1 AAAA
9249759 TTTTTTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
34 1 0.03
35 8 0.22
36 15 0.41
37 13 0.35
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.30
Consensus pattern (37 bp):
AAAAATTAAAAAGCTCAAAAAAATTCTATAAAATTTT
Found at i:9250879 original size:10 final size:10
Alignment explanation
Indices: 9250864--9250888 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9250854 TTTAAAAATA
9250864 TTTTTAATTT
1 TTTTTAATTT
9250874 TTTTTAATTT
1 TTTTTAATTT
9250884 TTTTT
1 TTTTT
9250889 GAAATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTAATTT
Found at i:9250923 original size:10 final size:10
Alignment explanation
Indices: 9250910--9251028 Score: 73
Period size: 10 Copynumber: 11.7 Consensus size: 10
9250900 AAATATTTAT
9250910 TTTTTAAAAA
1 TTTTTAAAAA
*
9250920 TTTTTCAAGAA
1 TTTTT-AAAAA
9250931 TTTTTAAAAA
1 TTTTTAAAAA
* *
9250941 ATTTTCAAAA
1 TTTTTAAAAA
*
9250951 -TTTTAAGAAT
1 TTTTTAA-AAA
*
9250961 TTTTTATAGAA
1 TTTTTA-AAAA
*
9250972 TTTTAAAAAAA
1 TTTT-TAAAAA
* * **
9250983 ATTTTAGACT
1 TTTTTAAAAA
9250993 TTTTTAGAAAA
1 TTTTTA-AAAA
*
9251004 TTTTTGAAAA
1 TTTTTAAAAA
9251014 -TTTT-AAAA
1 TTTTTAAAAA
9251022 TTTTTAA
1 TTTTTAA
9251029 TTTTTTTTAT
Statistics
Matches: 81, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
8 4 0.05
9 13 0.16
10 31 0.38
11 31 0.38
12 2 0.02
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:9250924 original size:11 final size:11
Alignment explanation
Indices: 9250908--9250988 Score: 51
Period size: 11 Copynumber: 7.6 Consensus size: 11
9250898 TAAAATATTT
*
9250908 ATTTTTTAAAA
1 ATTTTTAAAAA
* *
9250919 ATTTTTCAAGA
1 ATTTTTAAAAA
9250930 ATTTTTAAAAA
1 ATTTTTAAAAA
*
9250941 A-TTTT-CAAA
1 ATTTTTAAAAA
*
9250950 A-TTTTAAGAA
1 ATTTTTAAAAA
* * *
9250960 TTTTTTATAGA
1 ATTTTTAAAAA
*
9250971 ATTTTAAAAAA
1 ATTTTTAAAAA
*
9250982 AATTTTA
1 ATTTTTA
9250989 GACTTTTTTA
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
9 8 0.16
10 6 0.12
11 37 0.73
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (11 bp):
ATTTTTAAAAA
Found at i:9250973 original size:12 final size:11
Alignment explanation
Indices: 9250908--9250975 Score: 54
Period size: 11 Copynumber: 6.5 Consensus size: 11
9250898 TAAAATATTT
*
9250908 ATTTTTTAAAA
1 ATTTTTTAAGA
*
9250919 ATTTTTCAAGA
1 ATTTTTTAAGA
*
9250930 A-TTTTTAAAA
1 ATTTTTTAAGA
* *
9250940 AATTTTCAA-A
1 ATTTTTTAAGA
9250950 A--TTTTAAGA
1 ATTTTTTAAGA
9250959 ATTTTTTATAGA
1 ATTTTTTA-AGA
9250971 ATTTT
1 ATTTT
9250976 AAAAAAAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
8 5 0.11
9 2 0.04
10 10 0.22
11 21 0.46
12 8 0.17
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.51
Consensus pattern (11 bp):
ATTTTTTAAGA
Found at i:9251098 original size:19 final size:19
Alignment explanation
Indices: 9251055--9251103 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
9251045 AAAAAAAATT
*
9251055 TAGAATTTTTCAAAATTTT
1 TAGAATTTTTCAAAATTTG
*
9251074 TTGAATTTTT-AAAATTATG
1 TAGAATTTTTCAAAATT-TG
9251093 TAGAATATTTT
1 TAGAAT-TTTT
9251104 TTAGAATTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 15 0.60
20 4 0.16
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (19 bp):
TAGAATTTTTCAAAATTTG
Found at i:9251675 original size:16 final size:16
Alignment explanation
Indices: 9251654--9251699 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
9251644 GGTTGCTTAG
9251654 ATTTAAATTATTTTAA
1 ATTTAAATTATTTTAA
**
9251670 ATTTAAACCATTTTAA
1 ATTTAAATTATTTTAA
**
9251686 GCTTAAATTATTTT
1 ATTTAAATTATTTT
9251700 TTATTTGGAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (16 bp):
ATTTAAATTATTTTAA
Found at i:9255093 original size:21 final size:21
Alignment explanation
Indices: 9255069--9255109 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9255059 CGATTAGGTA
*
9255069 AAAATT-TTTTTTTTAATTTTT
1 AAAATTATTTTTGTT-ATTTTT
9255090 AAAATTATTTTTGTTATTTT
1 AAAATTATTTTTGTTATTTT
9255110 AAATAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (21 bp):
AAAATTATTTTTGTTATTTTT
Found at i:9255214 original size:21 final size:20
Alignment explanation
Indices: 9255178--9255220 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
9255168 TTGTTATTTT
*
9255178 TATAATAATAATTAATAAAA
1 TATAATAATAAATAATAAAA
*
9255198 TATAATAAATAAATAATGAAA
1 TATAAT-AATAAATAATAAAA
9255219 TA
1 TA
9255221 CATAGTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
TATAATAATAAATAATAAAA
Found at i:9262127 original size:14 final size:13
Alignment explanation
Indices: 9262087--9262130 Score: 56
Period size: 11 Copynumber: 3.5 Consensus size: 13
9262077 ATATCATTAT
9262087 AATTTACCACAAA
1 AATTTACCACAAA
*
9262100 ATTTTA-CA-AAA
1 AATTTACCACAAA
9262111 AATTTACCACAATA
1 AATTTACCACAA-A
9262125 AATTTA
1 AATTTA
9262131 ATTTAAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 8 0.31
12 4 0.15
13 7 0.27
14 7 0.27
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
AATTTACCACAAA
Found at i:9265146 original size:20 final size:21
Alignment explanation
Indices: 9265123--9265172 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
9265113 AAAATAATAA
*
9265123 TTTTGATTTTAAT-ATTATAT
1 TTTTAATTTTAATGATTATAT
9265143 TTTTAATTTTAATGATTATA-
1 TTTTAATTTTAATGATTATAT
*
9265163 GTTTAATTTT
1 TTTTAATTTT
9265173 GAATATATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (21 bp):
TTTTAATTTTAATGATTATAT
Found at i:9269100 original size:28 final size:27
Alignment explanation
Indices: 9269059--9269140 Score: 101
Period size: 29 Copynumber: 2.9 Consensus size: 27
9269049 AATAATAAAA
9269059 GAAAATTTTAAAAAAATAAAAAAATTT
1 GAAAATTTTAAAAAAATAAAAAAATTT
* *
9269086 GAAACATTTTTAAAAAATTATAAAAATTT
1 GAAA-A-TTTTAAAAAAATAAAAAAATTT
* *
9269115 AAAAATTTTAATAAAAATTAAAAAAT
1 GAAAATTTTAA-AAAAATAAAAAAAT
9269141 ATAAAATACA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 10 0.22
28 13 0.28
29 23 0.50
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (27 bp):
GAAAATTTTAAAAAAATAAAAAAATTT
Found at i:9269110 original size:9 final size:9
Alignment explanation
Indices: 9269098--9269146 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 9
9269088 AACATTTTTA
9269098 AAAAATTAT
1 AAAAATTAT
9269107 AAAAATT-T
1 AAAAATTAT
9269115 AAAAATTTTAAT
1 AAAAA--TT-AT
9269127 AAAAATTA-
1 AAAAATTAT
9269135 AAAAA-TAT
1 AAAAATTAT
9269143 AAAA
1 AAAA
9269147 TACAAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
7 2 0.06
8 15 0.43
9 8 0.23
10 4 0.11
12 6 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:9269114 original size:20 final size:20
Alignment explanation
Indices: 9269077--9269114 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9269067 TAAAAAAATA
*
9269077 AAAAAATTTGAAACATTTTT
1 AAAAAATTTGAAAAATTTTT
9269097 AAAAAATTAT-AAAAATTT
1 AAAAAATT-TGAAAAATTT
9269115 AAAAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 15 0.94
21 1 0.06
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (20 bp):
AAAAAATTTGAAAAATTTTT
Found at i:9269145 original size:28 final size:27
Alignment explanation
Indices: 9269060--9269146 Score: 111
Period size: 28 Copynumber: 3.1 Consensus size: 27
9269050 ATAATAAAAG
*
9269060 AAAATTTTAAAAAAATAAAAAAATTTGA
1 AAAATTTTAAAAAAATTAAAAAATTT-A
* *
9269088 AACATTTTTAAAAAATTATAAAAATTTA
1 AAAATTTTAAAAAAATTA-AAAAATTTA
*
9269116 AAAATTTTAATAAAAATTAAAAAATATA
1 AAAATTTTAA-AAAAATTAAAAAATTTA
9269144 AAA
1 AAA
9269147 TACAAAAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
28 35 0.69
29 16 0.31
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (27 bp):
AAAATTTTAAAAAAATTAAAAAATTTA
Found at i:9269278 original size:8 final size:8
Alignment explanation
Indices: 9269262--9269312 Score: 59
Period size: 8 Copynumber: 6.2 Consensus size: 8
9269252 TTTTTTTAAT
9269262 AAATAAAA
1 AAATAAAA
*
9269270 AAAT-GAA
1 AAATAAAA
9269277 AAATAAAAA
1 AAAT-AAAA
*
9269286 AAATCTAAA
1 AAAT-AAAA
9269295 AAATAAAA
1 AAATAAAA
9269303 AAATAAAA
1 AAATAAAA
9269311 AA
1 AA
9269313 TTTATATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 6 0.17
8 17 0.47
9 13 0.36
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (8 bp):
AAATAAAA
Done.