Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 58 of 113
Found at i:14370120 original size:63 final size:62
Alignment explanation
Indices: 14369928--14370137 Score: 155
Period size: 63 Copynumber: 3.3 Consensus size: 62
14369918 AAGGAAATAG
**
14369928 TGAAGGTATTTTTCTAGAATAAACGTTTTCACTAACTGTCTTAAAATTTGAGTTGTGAAAAAT
1 TGAAGGTATTTTTCTAGAATAAACACTTTCACTAACT-TCTTAAAATTTGAGTTGTGAAAAAT
** * * * * ** * * *
14369991 TGAAGCCATTTTTC-ACTGAA-AGACGTCTTT-AATAA-TCCCGAAAATTTTA--AG-AAAAAAT
1 TGAAGGTATTTTTCTA--GAATAAAC-ACTTTCACTAACTTCTTAAAATTTGAGTTGTGAAAAA-
14370049 T
62 T
14370050 AGTGAAGGTATTTTTCTAGAATAAACACTTTCACTAACTATCTTAAAATTTGAGTTGTGAAAAAT
1 --TGAAGGTATTTTTCTAGAATAAACACTTTCACTAACT-TCTTAAAATTTGAGTTGTGAAAAAT
*
14370115 TGAAGGTGTTTTTCACTAGAATA
1 TGAAGGTATTTTT--CTAGAATA
14370138 CGCCTTTAAT
Statistics
Matches: 107, Mismatches: 24, Indels: 30
0.66 0.15 0.19
Matches are distributed among these distances:
58 5 0.05
59 2 0.02
60 7 0.07
61 28 0.26
62 4 0.04
63 40 0.37
64 6 0.06
65 10 0.09
66 5 0.05
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (62 bp):
TGAAGGTATTTTTCTAGAATAAACACTTTCACTAACTTCTTAAAATTTGAGTTGTGAAAAAT
Found at i:14370282 original size:185 final size:184
Alignment explanation
Indices: 14370040--14370575 Score: 770
Period size: 185 Copynumber: 2.9 Consensus size: 184
14370030 GAAAATTTTA
* * * *
14370040 AGAAAAAATTAGTGAAGGTATTTTTCTAGAATAAACACTTTCACTAACTATCTTAAAATTTGAGT
1 AGAAGAAATTAGTGAAGGTATTTTTCTAGAATAAACGCATTCACTAACCATCTTAAAATTTGAGT
* *
14370105 TGTGAAAAATTGAAGGTGTTTTTCACTAGAATACGCCTTTAATAATCCCAAAAATTTTAAGAGAA
66 TGTGAAAAATTGAAGGTGTTTTTCACT-GAAGACGCCTTTAATAATCTCAAAAATTTTAA-AGAA
* * *
14370170 AATTATTGAAGGCGTTTGTTCTAAAAAAATATCTTTAATAATTATGTATGTAAATT
129 AATTATTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATT
* * *
14370226 AGAAGAAATTAGTG-ATGTATTTTTCTAGAATAAACGCCTTCACTAACCGTCTTAAAATTTGAGT
1 AGAAGAAATTAGTGAAGGTATTTTTCTAGAATAAACGCATTCACTAACCATCTTAAAATTTGAGT
* * ** * *
14370290 TGTGAAAAATTAAAAGCATTTTTCACTGAAAGACGTCTTTAATAATCTTAAAAATTTTAAA-AAA
66 TGTGAAAAATTGAAGGTGTTTTTCACTG-AAGACGCCTTTAATAATCTCAAAAATTTTAAAGAAA
* *
14370354 ATTATTGGAGGCGTTTGTTCTAAAAAAATACCTTCAATTATTATGTACGTAAATT
130 ATTATTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATT
* * * *
14370409 AAAAGGAATTAATGAAGGTATTTTTCTAGAATAAATGCATTCACTAACCATCTTAAAATTTGAGT
1 AGAAGAAATTAGTGAAGGTATTTTTCTAGAATAAACGCATTCACTAACCATCTTAAAATTTGAGT
* *
14370474 TGTGAAATATTGAAGGTGTTTTTCATTTGAAGACGCCTTTAATAATCTCAAAAATTTTAAAAGAA
66 TGTGAAAAATTGAAGGTGTTTTTCA-CTGAAGACGCCTTTAATAATCTCAAAAATTTT-AAAGAA
*
14370539 AATTATTGAACGCGTTTGTTCTAAAAAAATACCTTCA
129 AATTATTGAAGGCGTTTGTTCTAAAAAAATACCTTCA
14370576 CTAACCGTCC
Statistics
Matches: 309, Mismatches: 36, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
183 64 0.21
184 95 0.31
185 100 0.32
186 50 0.16
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (184 bp):
AGAAGAAATTAGTGAAGGTATTTTTCTAGAATAAACGCATTCACTAACCATCTTAAAATTTGAGT
TGTGAAAAATTGAAGGTGTTTTTCACTGAAGACGCCTTTAATAATCTCAAAAATTTTAAAGAAAA
TTATTGAAGGCGTTTGTTCTAAAAAAATACCTTCAATAATTATGTACGTAAATT
Found at i:14370723 original size:493 final size:499
Alignment explanation
Indices: 14369721--14370723 Score: 1158
Period size: 493 Copynumber: 2.0 Consensus size: 499
14369711 AATAATCCCA
14369721 AAAATTTTA-AGAGAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAACCATCTTA
1 AAAATTTTAGA-AGAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAACCATCTTA
* * *
14369785 AAATTTGAGTTGTAAAAAATTGAAGACATTTTTCATTAAAAGATGCCTTTAATAATCTCAAAAAT
65 AAATTTGAGTTGTAAAAAATTAAAGACATTTTTCACTAAAAGACGCCTTTAATAATCTCAAAAAT
* *
14369850 TTTAAGAAAAAATTATTAAAGGCGTTTATTCTAAAAAAATGCCTTTAATAATTATGTACGTAAAT
130 TTTAAGAAAAAATTATTAAAGGCGTTTATTCTAAAAAAATACCTTCAATAATTATGTACGTAAAT
* * ** **
14369915 TAGAAGGAAATAGTGAAGGTATTTTTCTAGAATAAACGTTTTCACTAACTGTCTTAAAATTTGAG
195 TAAAAGGAAATAATGAAGGTATTTTTCTAGAATAAACGCATTCACTAACCATCTTAAAATTTGAG
* *
14369980 TTGTGAAAAATTGAAGCCATTTTTCACTGAAAGACGTCTTTAATAATCCCGAAAATTTTAAGAAA
260 TTGTGAAAAATTGAAGCCATTTTTCACTGAAAGACGCCTTTAATAATCCCAAAAATTTTAAGAAA
* * * * * *
14370045 AAATTAGTGAAGGTATTTTTCTAGAATAAACACTTTCACTAACTATCTTAAAATTTGAGTTGTGA
325 AAATTAGTGAAGGTATTGTTCTAGAAAAAACACCTTCACTAACCATCCTAAAATTTGAGTAGTGA
* * ** * * * *
14370110 AAAATTGAAGGTGTTTTTCACTAGAATACGCCTTTAATAATCCCAAAAATTTTAAGAGAAAATTA
390 AAAATTGAAGGTGTTTTTCACTACAAGACGCCTCCAAAAATCCCAAAAATTTAAAAAAAAAATTA
* * * * * * **
14370175 TTGAAGGCGTTTGTTCTAAAAAAATATCTTTAATAATTATGTATG
455 GTCAAGGCATTTGTTCTAAAAAAATACCTTCAATAATCACCTATG
* * * *
14370220 TAAA--TTAGAAG-AAATTAGTG-ATGTATTTTTCTAGAATAAACGCCTTCACTAACCGTCTTAA
1 AAAATTTTAGAAGAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAACCATCTTAA
* * * *
14370281 AATTTGAGTTGTGAAAAATTAAA-AGCATTTTTCACTGAAAGACGTCTTTAATAATCTTAAAAAT
66 AATTTGAGTTGTAAAAAATTAAAGA-CATTTTTCACTAAAAGACGCCTTTAATAATCTCAAAAAT
** * *
14370345 TTT-A-AAAAAATTATTGGAGGCGTTTGTTCTAAAAAAATACCTTCAATTATTATGTACGTAAAT
130 TTTAAGAAAAAATTATTAAAGGCGTTTATTCTAAAAAAATACCTTCAATAATTATGTACGTAAAT
* *
14370408 TAAAAGGAATTAATGAAGGTATTTTTCTAGAATAAATGCATTCACTAACCATCTTAAAATTTGAG
195 TAAAAGGAAATAATGAAGGTATTTTTCTAGAATAAACGCATTCACTAACCATCTTAAAATTTGAG
* *** * *
14370473 TTGTGAAATATTGAAGGTGTTTTTCATTTG-AAGACGCCTTTAATAATCTCAAAAATTTTAA-AA
260 TTGTGAAAAATTGAAGCCATTTTTCA-CTGAAAGACGCCTTTAATAATCCCAAAAATTTTAAGAA
* * * *
14370536 GAAAATTATTGAACGCGT-TTGTTCTA-AAAAAATACCTTCACTAACCGTCCTAAAGTTTGAGTA
324 -AAAATTAGTGAA-G-GTATTGTTCTAGAAAAAACACCTTCACTAACCATCCTAAAATTTGAGTA
* * * * * * ***
14370599 GTGGAACATTGAATGTGTTTTTCATTACAAGATGCCTCCAACAAATTCCTTCAA-TTAAAAAAAA
386 GTGAAAAATTGAAGGTGTTTTTCACTACAAGACGCCTCCAA-AAATCCCAAAAATTTAAAAAAAA
* * * *
14370663 GAATTAGTCAAGGCATTT-TTCTAGAATAAATGCCTTCAAT-GTCCCCT-T-
450 -AATTAGTCAAGGCATTTGTTCTA-AAAAAATACCTTCAATAATCACCTATG
14370711 AAAATTTTAGAAG
1 AAAATTTTAGAAG
14370724 TGTAATATTA
Statistics
Matches: 420, Mismatches: 73, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
491 3 0.01
492 3 0.01
493 253 0.60
494 45 0.11
495 98 0.23
496 9 0.02
497 5 0.01
498 1 0.00
499 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (499 bp):
AAAATTTTAGAAGAAAATTAGTGAAGGCATTTTTCTAGAATAAACGCCTTCACTAACCATCTTAA
AATTTGAGTTGTAAAAAATTAAAGACATTTTTCACTAAAAGACGCCTTTAATAATCTCAAAAATT
TTAAGAAAAAATTATTAAAGGCGTTTATTCTAAAAAAATACCTTCAATAATTATGTACGTAAATT
AAAAGGAAATAATGAAGGTATTTTTCTAGAATAAACGCATTCACTAACCATCTTAAAATTTGAGT
TGTGAAAAATTGAAGCCATTTTTCACTGAAAGACGCCTTTAATAATCCCAAAAATTTTAAGAAAA
AATTAGTGAAGGTATTGTTCTAGAAAAAACACCTTCACTAACCATCCTAAAATTTGAGTAGTGAA
AAATTGAAGGTGTTTTTCACTACAAGACGCCTCCAAAAATCCCAAAAATTTAAAAAAAAAATTAG
TCAAGGCATTTGTTCTAAAAAAATACCTTCAATAATCACCTATG
Found at i:14378597 original size:34 final size:34
Alignment explanation
Indices: 14378522--14378588 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
14378512 GGTATAAATA
14378522 CTGCTAATATAGTGACATTTTCCAAATACAAACG
1 CTGCTAATATAGTGACATTTTCCAAATACAAACG
* *
14378556 CTGCTAATATAGTGACATTTTTCATATACAAAC
1 CTGCTAATATAGTGACATTTTCCAAATACAAAC
14378589 ATCGCTAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.33
Consensus pattern (34 bp):
CTGCTAATATAGTGACATTTTCCAAATACAAACG
Found at i:14381384 original size:2 final size:2
Alignment explanation
Indices: 14381371--14381413 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
14381361 GGATTATAAT
*
14381371 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14381413 T
1 T
14381414 ATATATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:14392684 original size:6 final size:6
Alignment explanation
Indices: 14392612--14392683 Score: 83
Period size: 6 Copynumber: 12.0 Consensus size: 6
14392602 AAAGCTCAAA
* * *
14392612 AATTTT AATTTTT AAATTT GATTTT GATTTT AATTTT AATTTT AATTTT
1 AATTTT AA-TTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT
* *
14392661 ATTTTT AATTTT -ATTTT TATTTT
1 AATTTT AATTTT AATTTT AATTTT
14392684 TTCATTGGTC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
5 5 0.09
6 47 0.81
7 6 0.10
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (6 bp):
AATTTT
Found at i:14393902 original size:11 final size:11
Alignment explanation
Indices: 14393888--14393919 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
14393878 TATTTTTGCA
*
14393888 TGATTTTATTT
1 TGATATTATTT
14393899 TGATATTATTT
1 TGATATTATTT
14393910 TGATATTATT
1 TGATATTATT
14393920 GCATGATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (11 bp):
TGATATTATTT
Found at i:14394060 original size:19 final size:20
Alignment explanation
Indices: 14394003--14394122 Score: 80
Period size: 19 Copynumber: 6.5 Consensus size: 20
14393993 CATGATTTAA
* *
14394003 TTGCATAATCATTTATATAT
1 TTGCATGATTATTTATATAT
*
14394023 TTCCAT-A--A-TTATATAT
1 TTGCATGATTATTTATATAT
*
14394039 TTGCATGACTATTTAT-TAT
1 TTGCATGATTATTTATATAT
* *
14394058 TTGCATGATTAATAATATAT
1 TTGCATGATTATTTATATAT
*
14394078 TTGCATAATTA-TTATAT-T
1 TTGCATGATTATTTATATAT
* * *
14394096 ATG-GT-ATAATTTAT-TAT
1 TTGCATGATTATTTATATAT
14394113 TTGCATGATT
1 TTGCATGATT
14394123 TGTTATATTT
Statistics
Matches: 78, Mismatches: 13, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
16 17 0.22
17 10 0.13
18 4 0.05
19 25 0.32
20 22 0.28
ACGTcount: A:0.33, C:0.07, G:0.08, T:0.51
Consensus pattern (20 bp):
TTGCATGATTATTTATATAT
Found at i:14394080 original size:20 final size:20
Alignment explanation
Indices: 14394028--14394094 Score: 84
Period size: 19 Copynumber: 3.5 Consensus size: 20
14394018 TATATTTCCA
*
14394028 TAATTATATATTTGCATGAC
1 TAATTATATATTTGCATGAT
*
14394048 TATTTAT-TATTTGCATGAT
1 TAATTATATATTTGCATGAT
* *
14394067 TAATAATATATTTGCATAAT
1 TAATTATATATTTGCATGAT
14394087 T-ATTATAT
1 TAATTATAT
14394095 TATGGTATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 22 0.55
20 18 0.45
ACGTcount: A:0.36, C:0.06, G:0.07, T:0.51
Consensus pattern (20 bp):
TAATTATATATTTGCATGAT
Found at i:14394218 original size:24 final size:24
Alignment explanation
Indices: 14394191--14394236 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14394181 TTATTGCATG
*
14394191 ATTTATTGA-ATGTTATGATTTTAT
1 ATTTATT-ACATGGTATGATTTTAT
14394215 ATTTATTACATGGTATGATTTT
1 ATTTATTACATGGTATGATTTT
14394237 TTTACATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.28, C:0.02, G:0.13, T:0.57
Consensus pattern (24 bp):
ATTTATTACATGGTATGATTTTAT
Found at i:14396007 original size:3 final size:3
Alignment explanation
Indices: 14395992--14396094 Score: 83
Period size: 3 Copynumber: 36.0 Consensus size: 3
14395982 ACCATGTTTC
* * * *
14395992 ATT ATT TTT ATT ATT ATC A-T ATT AGT A-T ATT -GT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
14396037 ATT ATT A-T ATT TTT ATT ATT A-T ATT ATT GTT ATT -TT CATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
* *
14396080 TTT ATT ATT TTT ATT
1 ATT ATT ATT ATT ATT
14396095 TCTTTATTCC
Statistics
Matches: 78, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
2 10 0.13
3 66 0.85
4 2 0.03
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14396047 original size:14 final size:14
Alignment explanation
Indices: 14395999--14396087 Score: 79
Period size: 14 Copynumber: 5.9 Consensus size: 14
14395989 TTCATTATTT
*
14395999 TTATTATTATCATA
1 TTATTATTATTATA
14396013 TTAGTATATTGTATTATTA
1 TTA-T-TA-T-TATTA-TA
14396032 TTATTATTATTATA
1 TTATTATTATTATA
*
14396046 TTTTTATTATTATA
1 TTATTATTATTATA
* *
14396060 TTATTGTTATTTTCA
1 TTATTATTATTAT-A
*
14396075 TTATTTTTATTAT
1 TTATTATTATTAT
14396088 TTTTATTTCT
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
14 28 0.45
15 18 0.29
16 3 0.05
17 3 0.05
18 5 0.08
19 5 0.08
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.65
Consensus pattern (14 bp):
TTATTATTATTATA
Found at i:14396069 original size:11 final size:11
Alignment explanation
Indices: 14395992--14396088 Score: 69
Period size: 11 Copynumber: 8.8 Consensus size: 11
14395982 ACCATGTTTC
14395992 ATTATT-TT-T
1 ATTATTATTAT
*
14396001 ATTATTATCAT
1 ATTATTATTAT
*
14396012 ATTAGTATATTGT
1 ATTA-T-TATTAT
14396025 ATTATTATTATT
1 ATTATTATTA-T
14396037 ATTATTA-TATT
1 ATTATTATTA-T
*
14396048 TTTATTATTAT
1 ATTATTATTAT
*
14396059 ATTATTGTTAT
1 ATTATTATTAT
*
14396070 TTTCATTATT-T
1 ATT-ATTATTAT
14396081 -TTATTATT
1 ATTATTATT
14396089 TTTATTTCTT
Statistics
Matches: 72, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
9 12 0.17
10 3 0.04
11 32 0.44
12 17 0.24
13 8 0.11
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (11 bp):
ATTATTATTAT
Found at i:14396508 original size:20 final size:20
Alignment explanation
Indices: 14396475--14396520 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
14396465 TTAAAAGATG
*
14396475 CTAGGTTTAAATTTAGGTTT
1 CTAGGATTAAATTTAGGTTT
*
14396495 CTAGGATTAGATTTAGGTTT
1 CTAGGATTAAATTTAGGTTT
14396515 CTAGGA
1 CTAGGA
14396521 GATTTTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (20 bp):
CTAGGATTAAATTTAGGTTT
Found at i:14396980 original size:17 final size:15
Alignment explanation
Indices: 14396952--14396990 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 15
14396942 GATCGCAAGG
14396952 TTTTTTTTTTTTATT
1 TTTTTTTTTTTTATT
14396967 TTTTATTTTATTTTATT
1 TTTT-TTTT-TTTTATT
14396984 TATTTTT
1 T-TTTTT
14396991 ATGTTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 4 0.19
16 4 0.19
17 10 0.48
18 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTTTTTTTTATT
Found at i:14396985 original size:21 final size:20
Alignment explanation
Indices: 14396952--14396990 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14396942 GATCGCAAGG
*
14396952 TTTTTTTTTTTTATTTTTTA
1 TTTTTTTTATTTATTTTTTA
14396972 TTTTATTTTATTTATTTTT
1 TTTT-TTTTATTTATTTTT
14396991 ATGTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTTTTATTTATTTTTTA
Found at i:14397163 original size:19 final size:19
Alignment explanation
Indices: 14397139--14397176 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
14397129 GTTTTCAAAG
14397139 AAAAAAAGAAAAAA-TCTTT
1 AAAAAAA-AAAAAACTCTTT
14397158 AAAAAAAAAAAAACTCTTT
1 AAAAAAAAAAAAACTCTTT
14397177 CATTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.68, C:0.08, G:0.03, T:0.21
Consensus pattern (19 bp):
AAAAAAAAAAAAACTCTTT
Found at i:14397328 original size:9 final size:8
Alignment explanation
Indices: 14397314--14397350 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
14397304 TGGTTTTCAA
14397314 AAAAAAAT
1 AAAAAAAT
*
14397322 TAAAAAAT
1 AAAAAAAT
14397330 AAAAAAGAT
1 AAAAAA-AT
14397339 AAAAAAAT
1 AAAAAAAT
14397347 AAAA
1 AAAA
14397351 GATAATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.14
Consensus pattern (8 bp):
AAAAAAAT
Found at i:14397335 original size:17 final size:17
Alignment explanation
Indices: 14397313--14397350 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
14397303 TTGGTTTTCA
*
14397313 AAAAAAAATTAAAAAAT
1 AAAAAAAATAAAAAAAT
*
14397330 AAAAAAGATAAAAAAAT
1 AAAAAAAATAAAAAAAT
14397347 AAAA
1 AAAA
14397351 GATAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (17 bp):
AAAAAAAATAAAAAAAT
Found at i:14397351 original size:15 final size:16
Alignment explanation
Indices: 14397322--14397355 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
14397312 AAAAAAAAAT
14397322 TAAAAAATAAAAAAGA
1 TAAAAAATAAAAAAGA
*
14397338 TAAAAAA-ATAAAAGA
1 TAAAAAATAAAAAAGA
14397353 TAA
1 TAA
14397356 TTTTATCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (16 bp):
TAAAAAATAAAAAAGA
Found at i:14401262 original size:32 final size:32
Alignment explanation
Indices: 14401195--14401289 Score: 106
Period size: 31 Copynumber: 3.0 Consensus size: 32
14401185 GGTGCATAAA
* * *
14401195 AAAACAAAAAAAAAGAAGCAAAAAG-TAAAATGT
1 AAAAC-AAAAAAAAG-AGGAAAAAGAAAAAAAGT
*
14401228 AAAACAAAAAGAAGAGGAAAAAGAAAAAAAGT
1 AAAACAAAAAAAAGAGGAAAAAGAAAAAAAGT
14401260 AAAA-AAAAAAAAGA-GAAAAATGAAAAAAAG
1 AAAACAAAAAAAAGAGGAAAAA-GAAAAAAAG
14401290 GAAGACTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
30 6 0.11
31 26 0.47
32 18 0.33
33 5 0.09
ACGTcount: A:0.77, C:0.03, G:0.15, T:0.05
Consensus pattern (32 bp):
AAAACAAAAAAAAGAGGAAAAAGAAAAAAAGT
Found at i:14401273 original size:22 final size:21
Alignment explanation
Indices: 14401245--14401288 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
14401235 AAAGAAGAGG
14401245 AAAAAGAAAAAAAGTAAAAAAA
1 AAAAAGAAAAAAA-TAAAAAAA
* *
14401267 AAAAAGAGAAAAATGAAAAAA
1 AAAAAGAAAAAAATAAAAAAA
14401288 A
1 A
14401289 GGAAGACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (21 bp):
AAAAAGAAAAAAATAAAAAAA
Found at i:14402293 original size:119 final size:119
Alignment explanation
Indices: 14401961--14402488 Score: 526
Period size: 120 Copynumber: 4.4 Consensus size: 119
14401951 GACATGCATT
* * * *
14401961 TTGATCTT-GCTCAGTCTAGATCATTTCTTATGACTCATGGTTTCATCCTAGTCACTTGTTTTCG
1 TTGATCTTGGCTCAATCTAGATCATTTCTTATGACTCATGGTTTCATCCTAGTCATTTATTTTCT
* * *
14402025 ACCTCGACTCGATCTTAGTTGC-TTTATTTTTTGACTTGTGGTTTTATCTT-GATCAC
66 ACCTCGACTCAATCTTAG-T-CATTTA-TTTTTGACTCGTGGTTTCATCTTAG-TCAC
* * * * * * * * * *
14402081 TTGATCTTAGTTTAGTCTAGATCATTTTTTAGGACTCGTGATTTTATCCTAGTCATTTATTTTTT
1 TTGATCTTGGCTCAATCTAGATCATTTCTTATGACTCATGGTTTCATCCTAGTCATTTATTTTCT
* * * * * *
14402146 ACCTCGACTCGATCTTGGTCGCTTCATTTTTTACTCGTGGTTTCGTCTTAGTCAC
66 ACCTCGACTCAATCTTAGTC-ATTTATTTTTGACTCGTGGTTTCATCTTAGTCAC
* * * * * * *
14402201 TTAATCTTGGTTCAATCCAAATCATTTCTTATGACTTAT-GTTTCATCCTAGTCATTTGTTTTTT
1 TTGATCTTGGCTCAATCTAGATCATTTCTTATGACTCATGGTTTCATCCTAGTCATTTATTTTCT
* * * * * * *
14402265 ACCTTGACTCAATCCTAATCATTTCATTTTTGACTCATGGTTTCCTCCTGGTCAC
66 ACCTCGACTCAATCTTAGTCATTT-ATTTTTGACTCGTGGTTTCATCTTAGTCAC
* * * * * *
14402320 CTGATCTTGGCTCAGTCTAGATCATTTCTAATGACTCATAGTTTCAT-TTTGCTCATTTATTTTC
1 TTGATCTTGGCTCAATCTAGATCATTTCTTATGACTCATGGTTTCATCCTAG-TCATTTATTTTC
* * * *
14402384 AACCTCGACTTAGTCTTGGTCACTTTATTTTTGACTCGTGGTTTCATCTTAGTCAC
65 TACCTCGACTCAATCTTAGTCA-TTTATTTTTGACTCGTGGTTTCATCTTAGTCAC
14402440 TTGATCTTGGCTCAATCTAGATCATTTCTTATGACTCATGGTTTCATCC
1 TTGATCTTGGCTCAATCTAGATCATTTCTTATGACTCATGGTTTCATCC
14402489 CAATCACTTG
Statistics
Matches: 329, Mismatches: 70, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
118 2 0.01
119 96 0.29
120 162 0.49
121 69 0.21
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (119 bp):
TTGATCTTGGCTCAATCTAGATCATTTCTTATGACTCATGGTTTCATCCTAGTCATTTATTTTCT
ACCTCGACTCAATCTTAGTCATTTATTTTTGACTCGTGGTTTCATCTTAGTCAC
Found at i:14402501 original size:56 final size:56
Alignment explanation
Indices: 14402415--14402546 Score: 183
Period size: 56 Copynumber: 2.4 Consensus size: 56
14402405 ACTTTATTTT
* ** * * *
14402415 TGACTCGTGGTTTCATCTTAGTCACTTGATCTTGGCTCAATCTAGATCATTTCTTA
1 TGACTCATGGTTTCATCCCAATCACTTGATCTTGGCTCAATCCAAATCATTTCTTA
*
14402471 TGACTCATGGTTTCATCCCAATCACTTGATCTTGGCTCAGTCCAAATCATTTCTTA
1 TGACTCATGGTTTCATCCCAATCACTTGATCTTGGCTCAATCCAAATCATTTCTTA
* *
14402527 TGACTCATAGTTTCGTCCCA
1 TGACTCATGGTTTCATCCCA
14402547 GTTATTTATT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (56 bp):
TGACTCATGGTTTCATCCCAATCACTTGATCTTGGCTCAATCCAAATCATTTCTTA
Found at i:14402815 original size:3 final size:3
Alignment explanation
Indices: 14402807--14402899 Score: 127
Period size: 3 Copynumber: 31.3 Consensus size: 3
14402797 TAGTATATTG
14402807 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
14402855 TAT TAT TA- TAT TAT TGT TAT CAT CAT TAT T-T TAAT TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
14402899 T
1 T
14402900 TTTTTTTTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
2 4 0.05
3 75 0.93
4 2 0.02
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14402916 original size:21 final size:20
Alignment explanation
Indices: 14402883--14402922 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14402873 ATCATCATTA
14402883 TTTTAATTATTTTTATTTTTT
1 TTTTAATTATTTTT-TTTTTT
* *
14402904 TTTTCATTCTTTTTTTTTT
1 TTTTAATTATTTTTTTTTT
14402923 ATCTCTATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTAATTATTTTTTTTTTT
Found at i:14403313 original size:20 final size:20
Alignment explanation
Indices: 14403290--14403331 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14403280 GATTTGTAGA
*
14403290 TTCTGGGTTTAAATTTAGGT
1 TTCTGGGATTAAATTTAGGT
* *
14403310 TTCTTGGATTAGATTTAGGT
1 TTCTGGGATTAAATTTAGGT
14403330 TT
1 TT
14403332 TTTTGAGAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.24, T:0.52
Consensus pattern (20 bp):
TTCTGGGATTAAATTTAGGT
Found at i:14404080 original size:8 final size:8
Alignment explanation
Indices: 14404067--14404106 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
14404057 ATCTATTTTT
14404067 TAAAAAAA
1 TAAAAAAA
14404075 T-AAAAAA
1 TAAAAAAA
14404082 TAAAAAAGA
1 TAAAAAA-A
14404091 TAAAAAAA
1 TAAAAAAA
*
14404099 CAAAAAAA
1 TAAAAAAA
14404107 AAGATAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 7 0.24
8 14 0.48
9 8 0.28
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.10
Consensus pattern (8 bp):
TAAAAAAA
Found at i:14406303 original size:22 final size:22
Alignment explanation
Indices: 14406256--14406304 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
14406246 ACAAATTAAA
**
14406256 AAAAATGAAAAGAAAAAAAGGG
1 AAAAATGAAAAGAAAAAAAAAG
*
14406278 AAAAATGAAAA-AAATAAAAAAT
1 AAAAATGAAAAGAAA-AAAAAAG
14406300 AAAAA
1 AAAAA
14406305 AAAGAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (22 bp):
AAAAATGAAAAGAAAAAAAAAG
Found at i:14406630 original size:13 final size:12
Alignment explanation
Indices: 14406603--14406637 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
14406593 AAAGATGTGC
14406603 AAGCAAAAAACA
1 AAGCAAAAAACA
*
14406615 AAGCAAAAAGATA
1 AAGCAAAAA-ACA
14406628 AAGCAAAAAA
1 AAGCAAAAAA
14406638 AAAAAGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.74, C:0.11, G:0.11, T:0.03
Consensus pattern (12 bp):
AAGCAAAAAACA
Found at i:14406643 original size:13 final size:13
Alignment explanation
Indices: 14406603--14406648 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
14406593 AAAGATGTGC
*
14406603 AAGC-AAAAAACA
1 AAGCAAAAAAAAA
* *
14406615 AAGCAAAAAGATA
1 AAGCAAAAAAAAA
14406628 AAGCAAAAAAAAA
1 AAGCAAAAAAAAA
14406641 AAG-AAAAA
1 AAGCAAAAA
14406649 TAAGGGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 9 0.31
13 20 0.69
ACGTcount: A:0.78, C:0.09, G:0.11, T:0.02
Consensus pattern (13 bp):
AAGCAAAAAAAAA
Found at i:14407286 original size:20 final size:20
Alignment explanation
Indices: 14407261--14407307 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
14407251 TGTGGCATTT
14407261 GCATTTGCATAGGAACAATG
1 GCATTTGCATAGGAACAATG
*
14407281 GCATTTGCATAGGAACATTG
1 GCATTTGCATAGGAACAATG
14407301 GCATTTG
1 GCATTTG
14407308 TGCCTTTAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (20 bp):
GCATTTGCATAGGAACAATG
Found at i:14408673 original size:45 final size:46
Alignment explanation
Indices: 14408577--14408721 Score: 141
Period size: 45 Copynumber: 3.2 Consensus size: 46
14408567 TGTTTTAAAC
** * ** * *
14408577 TTTT-AAAAGTTGTGGAGCTTCTAATGAGTTGAGCATTTAGCTTTA
1 TTTTCAAAAGTTGTAAAACTTCTAATGAGAAGAGCTTTTAGATTTA
* * *
14408622 TTTTCAAAAGTTGTAAAACTTTTAATGAGAGGAG-TTTTAGTTTTA
1 TTTTCAAAAGTTGTAAAACTTCTAATGAGAAGAGCTTTTAGATTTA
** * *
14408667 TTTTCAAAAGTTGTGGACCTTCTAATTAGAAGAGCTTTTAGATTTA
1 TTTTCAAAAGTTGTAAAACTTCTAATGAGAAGAGCTTTTAGATTTA
*
14408713 TTTTGAAAA
1 TTTTCAAAA
14408722 ATTATGGAGC
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
45 41 0.50
46 41 0.50
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.43
Consensus pattern (46 bp):
TTTTCAAAAGTTGTAAAACTTCTAATGAGAAGAGCTTTTAGATTTA
Found at i:14408737 original size:46 final size:46
Alignment explanation
Indices: 14408589--14408751 Score: 123
Period size: 46 Copynumber: 3.6 Consensus size: 46
14408579 TTAAAAGTTG
* *** * * * *
14408589 TGGAGCTTCTAATGAGTTGAGCATTTAGCTTTATTTTCAAAAGTTG
1 TGGACCTTCTAATGAGAAAAGCTTTTAGATTTATTTTCAAAAATTA
** * * ** * * *
14408635 TAAAACTTTTAATGAGAGGAG-TTTTAGTTTTATTTTCAAAAGTTG
1 TGGACCTTCTAATGAGAAAAGCTTTTAGATTTATTTTCAAAAATTA
* * *
14408680 TGGACCTTCTAATTAGAAGAGCTTTTAGATTTATTTTGAAAAATTA
1 TGGACCTTCTAATGAGAAAAGCTTTTAGATTTATTTTCAAAAATTA
14408726 TGGAGCC-TCTAATGAGAAAAGCTTTT
1 TGGA-CCTTCTAATGAGAAAAGCTTTT
14408752 CGAGAATTCA
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
45 37 0.39
46 56 0.59
47 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (46 bp):
TGGACCTTCTAATGAGAAAAGCTTTTAGATTTATTTTCAAAAATTA
Found at i:14408739 original size:91 final size:90
Alignment explanation
Indices: 14408577--14408742 Score: 197
Period size: 91 Copynumber: 1.8 Consensus size: 90
14408567 TGTTTTAAAC
* ** * * * *
14408577 TTTTAAAAGTTGTGGAGCTTCTAATGAGTTGAGCATTTAGCTTTATTTTCAAAAGTTGTAAAACT
1 TTTTAAAAGTTGTGGACCTTCTAATGAGAAGAGCATTTAGATTTATTTTCAAAAATTATAAAACC
*
14408642 TTTAATGAGAGGAGTTTTAGTTTTA
66 TCTAATGAGAGGAGTTTTAGTTTTA
* * * ** *
14408667 TTTTCAAAAGTTGTGGACCTTCTAATTAGAAGAGCTTTTAGATTTATTTTGAAAAATTATGGAGC
1 TTTT-AAAAGTTGTGGACCTTCTAATGAGAAGAGCATTTAGATTTATTTTCAAAAATTATAAAAC
14408732 CTCTAATGAGA
65 CTCTAATGAGA
14408743 AAAGCTTTTC
Statistics
Matches: 61, Mismatches: 14, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
90 4 0.07
91 57 0.93
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (90 bp):
TTTTAAAAGTTGTGGACCTTCTAATGAGAAGAGCATTTAGATTTATTTTCAAAAATTATAAAACC
TCTAATGAGAGGAGTTTTAGTTTTA
Found at i:14422497 original size:15 final size:16
Alignment explanation
Indices: 14422479--14422508 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14422469 CACTATATCG
14422479 GTCAAAA-TTATATAC
1 GTCAAAAGTTATATAC
14422494 GTCAAAAGTTATATA
1 GTCAAAAGTTATATA
14422509 TATATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (16 bp):
GTCAAAAGTTATATAC
Found at i:14422508 original size:2 final size:2
Alignment explanation
Indices: 14422503--14422538 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
14422493 CGTCAAAAGT
14422503 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14422539 GAATTGGATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14423624 original size:26 final size:27
Alignment explanation
Indices: 14423586--14423659 Score: 69
Period size: 26 Copynumber: 2.7 Consensus size: 27
14423576 CACAAATTCT
* *
14423586 TAAAAAATAAAATTATTTTTAAAAATTA
1 TAAAACAT-AAATTATTTTTAAAAATAA
* * * *
14423614 TAATA-ATAAATAACTTTAAAAAATAA
1 TAAAACATAAATTATTTTTAAAAATAA
14423640 TAAAACATAATATTATTTTT
1 TAAAACATAA-ATTATTTTT
14423660 CCTTTATATA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
26 19 0.54
27 6 0.17
28 10 0.29
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (27 bp):
TAAAACATAAATTATTTTTAAAAATAA
Found at i:14423974 original size:29 final size:29
Alignment explanation
Indices: 14423942--14424001 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
14423932 GAAAGTTGTG
14423942 AAATAGAGACCAAGTCAACAATACGGGGA
1 AAATAGAGACCAAGTCAACAATACGGGGA
* *
14423971 AAATAGAGACCAAGTCAACTATATGGGGA
1 AAATAGAGACCAAGTCAACAATACGGGGA
14424000 AA
1 AA
14424002 TGCACCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.15, G:0.23, T:0.13
Consensus pattern (29 bp):
AAATAGAGACCAAGTCAACAATACGGGGA
Found at i:14425917 original size:33 final size:32
Alignment explanation
Indices: 14425880--14425982 Score: 93
Period size: 33 Copynumber: 3.1 Consensus size: 32
14425870 CCTATCCTTT
*
14425880 CTCCAAACCAGTTTCTGCCGCCCCCCA-TTCTTC
1 CTCCAAACCA-TTTCAGCC-CCCCCCACTTCTTC
* *
14425913 CTCCAAACCCATTTCAGCCTCCTCCACTTCTTC
1 CTCCAAA-CCATTTCAGCCCCCCCCACTTCTTC
* * *
14425946 CTCCAAACCCCTTTCAGCCTCCTCC-CTTGCTTC
1 CTCCAAA-CCATTTCAGCCCCCCCCACTT-CTTC
14425979 CTCC
1 CTCC
14425983 CATCCCTTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
32 8 0.13
33 52 0.83
34 3 0.05
ACGTcount: A:0.15, C:0.50, G:0.06, T:0.29
Consensus pattern (32 bp):
CTCCAAACCATTTCAGCCCCCCCCACTTCTTC
Found at i:14426046 original size:36 final size:36
Alignment explanation
Indices: 14425994--14426189 Score: 248
Period size: 36 Copynumber: 5.4 Consensus size: 36
14425984 ATCCCTTTTG
*
14425994 AGCCCCCACCAGCTCCACTAATTCCAAACCCATTTC
1 AGCCTCCACCAGCTCCACTAATTCCAAACCCATTTC
14426030 AGCCTCCACCAGCTCCACTAATTCCAAACCCATTTC
1 AGCCTCCACCAGCTCCACTAATTCCAAACCCATTTC
* * * * * *
14426066 AACCTCCTCCTGCTCCTCTTATTCCAAACCCGTTTC
1 AGCCTCCACCAGCTCCACTAATTCCAAACCCATTTC
14426102 AGCCTCCACCAGCTCCACTAATTCCAAACCCATTTC
1 AGCCTCCACCAGCTCCACTAATTCCAAACCCATTTC
* * ** *
14426138 AGCCTCCCCCGGCTCCACTTTTTCCTCCAAATCCATTTC
1 AGCCTCCACCAGCTCCAC-TAAT--TCCAAACCCATTTC
*
14426177 AGCCTCCTCCAGC
1 AGCCTCCACCAGC
14426190 ACCTCCAGCA
Statistics
Matches: 137, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
36 111 0.81
37 2 0.01
39 24 0.18
ACGTcount: A:0.22, C:0.46, G:0.07, T:0.25
Consensus pattern (36 bp):
AGCCTCCACCAGCTCCACTAATTCCAAACCCATTTC
Found at i:14426183 original size:108 final size:108
Alignment explanation
Indices: 14425934--14426186 Score: 307
Period size: 108 Copynumber: 2.3 Consensus size: 108
14425924 TTTCAGCCTC
* * * * * * *
14425934 CTCCACTTCTTCCTCCAAACCCCTTTCAGCCTCCTCCCTTGCTTCCTCCCATCCCTTTTGAGCCC
1 CTCCACTTATTCCTCCAAACCCATTTCAGCCTCCTCCCTTGCTTACTCCAAACCCGTTTCAGCCC
14425999 CCACCAGCTCCACTAATTCCAAACCCATTTCAGCCTCCACCAG
66 CCACCAGCTCCACTAATTCCAAACCCATTTCAGCCTCCACCAG
* * *
14426042 CTCCAC-TAAT--TCCAAACCCATTTCAACCTCCTCCTGCTCCT-CTTATTCCAAACCCGTTTCA
1 CTCCACTTATTCCTCCAAACCCATTTCAGCCTCCTCC--CT--TGCTTACTCCAAACCCGTTTCA
* * *
14426103 GCCTCCACCAGCTCCACTAATTCCAAACCCATTTCAGCCTCCCCCGG
62 GCCCCCACCAGCTCCACTAATTCCAAACCCATTTCAGCCTCCACCAG
* *
14426150 CTCCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCC
1 CTCCACTTATTCCTCCAAACCCATTTCAGCCTCCTCC
14426187 AGCACCTCCA
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
105 22 0.18
107 4 0.03
108 70 0.58
109 3 0.02
111 22 0.18
ACGTcount: A:0.19, C:0.47, G:0.06, T:0.28
Consensus pattern (108 bp):
CTCCACTTATTCCTCCAAACCCATTTCAGCCTCCTCCCTTGCTTACTCCAAACCCGTTTCAGCCC
CCACCAGCTCCACTAATTCCAAACCCATTTCAGCCTCCACCAG
Found at i:14426278 original size:105 final size:105
Alignment explanation
Indices: 14426152--14426470 Score: 611
Period size: 105 Copynumber: 3.0 Consensus size: 105
14426142 TCCCCCGGCT
*
14426152 CCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCCAGCACCTCCAGCACCATTCTTTCCTTTTCC
1 CCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCC
*
14426217 ACCAATTCCAGGACCAACTCCTCCACCATCATCACCGCCA
66 ACCAATTCCAGGACTAACTCCTCCACCATCATCACCGCCA
14426257 CCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCC
1 CCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCC
14426322 ACCAATTCCAGGACTAACTCCTCCACCATCATCACCGCCA
66 ACCAATTCCAGGACTAACTCCTCCACCATCATCACCGCCA
14426362 CCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCC
1 CCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCC
*
14426427 ACCAATTCCAGGACTAACTCCTCCACCATCACCACCGCCA
66 ACCAATTCCAGGACTAACTCCTCCACCATCATCACCGCCA
14426467 CCAC
1 CCAC
14426471 CACCACCAGC
Statistics
Matches: 211, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 211 1.00
ACGTcount: A:0.23, C:0.46, G:0.06, T:0.26
Consensus pattern (105 bp):
CCACTTTTTCCTCCAAATCCATTTCAGCCTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCC
ACCAATTCCAGGACTAACTCCTCCACCATCATCACCGCCA
Found at i:14426289 original size:51 final size:51
Alignment explanation
Indices: 14426234--14426397 Score: 160
Period size: 51 Copynumber: 3.2 Consensus size: 51
14426224 CCAGGACCAA
14426234 CTCCTCCACCATCATCACCGCCACCACTTTTTCCTCCAAATCCATTTCAGC
1 CTCCTCCACCATCATCACCGCCACCACTTTTTCCTCCAAATCCATTTCAGC
* *** *
14426285 CTCCTCCAGCA-C--CACCAG-CACCA-TTCTTTCCTTTTCCACCAATTCCAGGACTA-A
1 CTCCTCCACCATCATCACC-GCCACCACTT-TTTCC---TCCA--AA-TCCATTTC-AGC
14426339 CTCCTCCACCATCATCACCGCCACCACTTTTTCCTCCAAATCCATTTCAGC
1 CTCCTCCACCATCATCACCGCCACCACTTTTTCCTCCAAATCCATTTCAGC
14426390 CTCCTCCA
1 CTCCTCCA
14426398 GCACCACCAG
Statistics
Matches: 88, Mismatches: 10, Indels: 30
0.69 0.08 0.23
Matches are distributed among these distances:
47 2 0.02
48 14 0.16
49 1 0.01
50 2 0.02
51 27 0.31
52 2 0.02
53 2 0.02
54 19 0.22
55 2 0.02
56 1 0.01
57 14 0.16
58 2 0.02
ACGTcount: A:0.22, C:0.46, G:0.05, T:0.27
Consensus pattern (51 bp):
CTCCTCCACCATCATCACCGCCACCACTTTTTCCTCCAAATCCATTTCAGC
Found at i:14426448 original size:54 final size:53
Alignment explanation
Indices: 14426180--14426460 Score: 198
Period size: 54 Copynumber: 5.3 Consensus size: 53
14426170 CCATTTCAGC
* *
14426180 CTCCTCCAGCACCTCCAGCACCATTCTTTCCTTTTCCACCAATTCCAGGACCAA
1 CTCCTCCACCACCACCAGCACCATTCTTTCCTTTTCCACCAATTCCAGGA-CAA
*** *
14426234 CTCCTCCACCATCATCACC-GCCACCACTT-TTTCC---TCCA--AA-TCCATTTCAGC
1 CTCCTCCACCA-C--CACCAG-CACCA-TTCTTTCCTTTTCCACCAATTCCAGGACA-A
*
14426285 CTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCCACCAATTCCAGGACTAA
1 CTCCTCCACCACCACCAGCACCATTCTTTCCTTTTCCACCAATTCCAGGAC-AA
*** *
14426339 CTCCTCCACCATCATCACC-GCCACCACTT-TTTCC---TCCA--AA-TCCATTTCAGC
1 CTCCTCCACCA-C--CACCAG-CACCA-TTCTTTCCTTTTCCACCAATTCCAGGACA-A
*
14426390 CTCCTCCAGCACCACCAGCACCATTCTTTCCTTTTCCACCAATTCCAGGACTAA
1 CTCCTCCACCACCACCAGCACCATTCTTTCCTTTTCCACCAATTCCAGGAC-AA
*
14426444 CTCCTCCACCATCACCA
1 CTCCTCCACCACCACCA
14426461 CCGCCACCAC
Statistics
Matches: 174, Mismatches: 23, Indels: 60
0.68 0.09 0.23
Matches are distributed among these distances:
47 4 0.02
48 28 0.16
49 2 0.01
50 5 0.03
51 37 0.21
52 4 0.02
53 4 0.02
54 53 0.30
55 4 0.02
56 2 0.01
57 27 0.16
58 4 0.02
ACGTcount: A:0.23, C:0.46, G:0.06, T:0.26
Consensus pattern (53 bp):
CTCCTCCACCACCACCAGCACCATTCTTTCCTTTTCCACCAATTCCAGGACAA
Found at i:14427832 original size:15 final size:17
Alignment explanation
Indices: 14427812--14427857 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
14427802 AATTTAGTAT
14427812 TTATTTA-ATTTT-TAA
1 TTATTTATATTTTATAA
14427827 TTATTTATATTTTATAA
1 TTATTTATATTTTATAA
*
14427844 TTA-TCATATTTTAT
1 TTATTTATATTTTAT
14427858 TTATTATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 7 0.25
16 15 0.54
17 6 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTTATATTTTATAA
Found at i:14427863 original size:17 final size:17
Alignment explanation
Indices: 14427770--14427865 Score: 71
Period size: 15 Copynumber: 5.8 Consensus size: 17
14427760 AATATTTATT
14427770 TTTTAATTTATTA-AATA
1 TTTT-ATTTATTATAATA
*
14427787 -TTTATTTGATTATAAAA
1 TTTTATTT-ATTATAATA
14427804 TTTAGTATTTATT-TAAT-
1 TTT--TATTTATTATAATA
*
14427821 TTTTAATTATT-T-ATA
1 TTTTATTTATTATAATA
* *
14427836 TTTTA-TAATTATCATA
1 TTTTATTTATTATAATA
14427852 TTTTATTTATTATA
1 TTTTATTTATTATA
14427866 TTGAATTAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
14 6 0.09
15 18 0.28
16 15 0.23
17 12 0.19
18 5 0.08
19 3 0.05
20 5 0.08
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTTATTTATTATAATA
Found at i:14429344 original size:16 final size:16
Alignment explanation
Indices: 14429311--14429353 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14429301 TGTTGTTGTA
* *
14429311 TAAATTATATCTTAAT
1 TAAATAATAACTTAAT
*
14429327 TAAATAATAACTTTAT
1 TAAATAATAACTTAAT
14429343 TAACATAATAA
1 TAA-ATAATAA
14429354 ATAATAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATAATAACTTAAT
Found at i:14432603 original size:15 final size:15
Alignment explanation
Indices: 14432569--14432603 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14432559 GACGTTTCTT
*
14432569 ATTAAAATATAAGTA
1 ATTAAAATATAAATA
*
14432584 TTTAAAATATAAATA
1 ATTAAAATATAAATA
14432599 ATTAA
1 ATTAA
14432604 TATAAACATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (15 bp):
ATTAAAATATAAATA
Found at i:14433513 original size:24 final size:23
Alignment explanation
Indices: 14433473--14433531 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 23
14433463 ACCTCTAATT
14433473 TAAACAAATAATAAAT-AATAAAA
1 TAAACAAATAATAAATAAAT-AAA
14433496 TAAACAAAATGAAT-AATAAATAAA
1 TAAAC-AAAT-AATAAATAAATAAA
*
14433520 TAAATAAATAAT
1 TAAACAAATAAT
14433532 TTTTTTAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
22 3 0.09
23 9 0.28
24 14 0.44
25 6 0.19
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (23 bp):
TAAACAAATAATAAATAAATAAA
Found at i:14433519 original size:4 final size:4
Alignment explanation
Indices: 14433473--14433530 Score: 50
Period size: 4 Copynumber: 14.8 Consensus size: 4
14433463 ACCTCTAATT
* * *
14433473 TAAA CAAA T-AA TAAA T-AA TAAAA TAAA CAAAA TGAA T-AA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA T-AAA TAAA -TAAA TAAA TAAA TAAA TAAA
14433520 TAAA TAAA TAA
1 TAAA TAAA TAA
14433531 TTTTTTTAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
3 9 0.20
4 29 0.66
5 6 0.14
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.22
Consensus pattern (4 bp):
TAAA
Found at i:14433796 original size:19 final size:19
Alignment explanation
Indices: 14433756--14433796 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
14433746 TTTCTTCACT
*
14433756 TTCCCTTTTTTTTTCTCTC
1 TTCCCTTTTTTTTTCTCGC
14433775 TTCCACTTTTTTTTT-TCGC
1 TTCC-CTTTTTTTTTCTCGC
14433794 TTC
1 TTC
14433797 TCTCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.66
Consensus pattern (19 bp):
TTCCCTTTTTTTTTCTCGC
Found at i:14443261 original size:17 final size:17
Alignment explanation
Indices: 14443239--14443271 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14443229 ACTTGAACCT
14443239 AAACCCTAAACCAATCC
1 AAACCCTAAACCAATCC
14443256 AAACCCTAAACCAATC
1 AAACCCTAAACCAATC
14443272 ATACATTCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.12
Consensus pattern (17 bp):
AAACCCTAAACCAATCC
Found at i:14443327 original size:18 final size:18
Alignment explanation
Indices: 14443304--14443364 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
14443294 CTTGTTATCA
14443304 CATGCATTTTCATATTGT
1 CATGCATTTTCATATTGT
14443322 CATGCA--TTCATACTTTGT
1 CATGCATTTTCATA--TTGT
* * *
14443340 CATTCATGTT-ATATTAT
1 CATGCATTTTCATATTGT
14443357 CATGCATT
1 CATGCATT
14443365 AATCATATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
16 6 0.17
17 9 0.26
18 15 0.43
19 3 0.09
20 2 0.06
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.48
Consensus pattern (18 bp):
CATGCATTTTCATATTGT
Found at i:14444407 original size:25 final size:25
Alignment explanation
Indices: 14444379--14444440 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
14444369 TTCATGCCTG
14444379 TTTTAATTATATCACTTT-AT-GCATA
1 TTTTAATTATATCA-TTTCATAG-ATA
*
14444404 TTTTAATTATGTCATTTCATAGATA
1 TTTTAATTATATCATTTCATAGATA
14444429 TTTTAATTATAT
1 TTTTAATTATAT
14444441 TATTATGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 3 0.09
25 29 0.88
26 1 0.03
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (25 bp):
TTTTAATTATATCATTTCATAGATA
Found at i:14444446 original size:33 final size:33
Alignment explanation
Indices: 14444409--14444471 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
14444399 GCATATTTTA
*
14444409 ATTATGTCATTTCATAG-ATATTTTAATTATATT
1 ATTATGTCATTTCAT-GCATATTTAAATTATATT
*
14444442 ATTATGTTATTTCATGCATATTTAAATTAT
1 ATTATGTCATTTCATGCATATTTAAATTAT
14444472 GTCATTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATGTCATTTCATGCATATTTAAATTATATT
Found at i:14454612 original size:12 final size:11
Alignment explanation
Indices: 14454584--14454616 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
14454574 ACTATGCTTG
14454584 AAAAAAAA-GA
1 AAAAAAAAGGA
14454594 AAAAAAAAGGA
1 AAAAAAAAGGA
14454605 AAAGAAAAAGGA
1 AAA-AAAAAGGA
14454617 GGACCCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 5 0.24
12 8 0.38
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGGA
Found at i:14455867 original size:48 final size:47
Alignment explanation
Indices: 14455806--14456248 Score: 340
Period size: 48 Copynumber: 9.2 Consensus size: 47
14455796 AGATCAACTT
** **
14455806 TTTTTCATTAAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGCC
1 TTTTTCAAAAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCC
14455853 ATTTTTCAAAAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCCC
1 -TTTTTCAAAAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAG-CC
** * * * *
14455902 TTTCTAAAAAAAGATTTTTAAAATTCGTTGCCTATCTTCATATGAG-C
1 TTT-TTCAAAAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCC
* * * * * *
14455949 TCTTTTCTAGAAGGCTTTTTAAAGTTTGTTACGTATTTTC-TCAAGAG-C
1 T-TTTTC-AAAAAGATTTTTAAAGTTTGTTGCCTATTTTCAT-AGGAGCC
* * * *
14455997 -TTATCGAGACAGAGATTTTTAAAGTTTATTGCCCATTTTCATAGGAGCC
1 TTTTTC-A-A-AAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCC
* * ** * *
14456046 ATCTTCCAAAAAGATTTTTAAAGTTCATTGCTTATTTTCATATGAGCC
1 -TTTTTCAAAAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCC
* *** *
14456094 TTTTTCAGACAAAGATTTTTAAAGCTCACTACCTATTTTCATAGGAGCTC
1 TTTTTCA-A-AAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGC-C
* * * *
14456144 TTTTCCAGACAGATTTTTAAAGTTTGTTGCTTATTTTCATAGGAGCC
1 TTTTTCAAAAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCC
* * * * *
14456191 CTTCTCAGATAGATATTTTTAAAGTTTGTTG-CTATTTTCATAAGAGCC
1 TTTTTCA-A-AAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCC
*
14456239 CTTTT-AAAAA
1 TTTTTCAAAAA
14456249 TTGAATTTTA
Statistics
Matches: 313, Mismatches: 66, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
45 2 0.01
46 6 0.02
47 15 0.05
48 187 0.60
49 93 0.30
50 8 0.03
51 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (47 bp):
TTTTTCAAAAAGATTTTTAAAGTTTGTTGCCTATTTTCATAGGAGCC
Found at i:14455921 original size:97 final size:96
Alignment explanation
Indices: 14455815--14456243 Score: 427
Period size: 97 Copynumber: 4.4 Consensus size: 96
14455805 TTTTTTCATT
*
14455815 AAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGCCATTTTTCAAAAAGATTTTTAAAGTTTG
1 AAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGCC-TTTTCCAAAAAGATTTTTAAAGTTTG
* * *
14455880 TTGCCTATTTTCATAGGAGCCCTTTCT-AAAAA
65 TTGCTTATTTTCATAGGAG-CCTTTCTCAGACA
* * * * * * * *
14455912 AAGATTTTTAAAATTCGTTGCCTATCTTCATATGAGCTCTTTTCTAGAAGGCTTTTTAAAGTTTG
1 AAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGC-CTTTTCCAAAAAGATTTTTAAAGTTTG
* * * *
14455977 TTACGTATTTTC-TCAAGAG-CTTATC-GAGACA
65 TTGCTTATTTTCAT-AGGAGCCTT-TCTCAGACA
* * * * **
14456008 GAGATTTTTAAAGTTTATTGCCCATTTTCATAGGAGCCATCTTCCAAAAAGATTTTTAAAGTTCA
1 AAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGCC-TTTTCCAAAAAGATTTTTAAAGTTTG
* *
14456073 TTGCTTATTTTCATATGAGCCTTTTTCAGACA
65 TTGCTTATTTTCATAGGAGCCTTTCTCAGACA
* * * * *
14456105 AAGATTTTTAAAGCTCACTACCTATTTTCATAGGAGCTCTTTTCCAGACAGATTTTTAAAGTTTG
1 AAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGC-CTTTTCCAAAAAGATTTTTAAAGTTTG
* *
14456170 TTGCTTATTTTCATAGGAGCCCTTCTCAGATA
65 TTGCTTATTTTCATAGGAGCCTTTCTCAGACA
* * ** *
14456202 GATATTTTTAAAGTTTGTTG-CTATTTTCATAAGAGCCCTTTT
1 AAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAG-CCTTTT
14456244 AAAAATTGAA
Statistics
Matches: 266, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
95 4 0.02
96 89 0.33
97 171 0.64
98 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (96 bp):
AAGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGCCTTTTCCAAAAAGATTTTTAAAGTTTGT
TGCTTATTTTCATAGGAGCCTTTCTCAGACA
Found at i:14456145 original size:193 final size:193
Alignment explanation
Indices: 14455816--14456238 Score: 514
Period size: 193 Copynumber: 2.2 Consensus size: 193
14455806 TTTTTCATTA
* * * **
14455816 AGATTTTTAAAGTTCATTGCCTATTTTCATAGGAGCCATTTTTCAAAAAGATTTTTAAAGTTTGT
1 AGATTTTTAAAGTTTATTGCCTATTTTCATAGGAGCCATCTTCCAAAAAGATTTTTAAAGTTCAT
* ** * *
14455881 TGCCTATTTTCATAGGAGCCCTTTCTAAAAAAAGATTTTTAAAATTCGTTGCCTATCTTCATATG
66 TGCCTATTTTCATAGGAGCCCTTTCTAAAAAAAGATTTTTAAAACTCACTACCTATCTTCATAGG
* *
14455946 AGCTCTTTTCTAGA-AGGCTTTTTAAAGTTTGTTACGTATTTTC-TCAAGAG-CTTATCGAGACA
131 AGCTCTTTTCCAGACA-GATTTTTAAAGTTTGTTACGTATTTTCAT-AAGAGCCTTATC-AGACA
14456008 G
193 G
*
14456009 AGATTTTTAAAGTTTATTGCCCATTTTCATAGGAGCCATCTTCCAAAAAGATTTTTAAAGTTCAT
1 AGATTTTTAAAGTTTATTGCCTATTTTCATAGGAGCCATCTTCCAAAAAGATTTTTAAAGTTCAT
* * * * * * *
14456074 TGCTTATTTTCATATGAG-CCTTTTTCAGACAAAGATTTTTAAAGCTCACTACCTATTTTCATAG
66 TGCCTATTTTCATAGGAGCCCTTTCT-AAAAAAAGATTTTTAAAACTCACTACCTATCTTCATAG
* * * * *
14456138 GAGCTCTTTTCCAGACAGATTTTTAAAGTTTGTTGCTTATTTTCATAGGAGCCCTTCTCAGATAG
130 GAGCTCTTTTCCAGACAGATTTTTAAAGTTTGTTACGTATTTTCATAAGAG-CCTTATCAGACAG
* * *
14456203 ATATTTTTAAAGTTTGTTG-CTATTTTCATAAGAGCC
1 AGATTTTTAAAGTTTATTGCCTATTTTCATAGGAGCC
14456239 CTTTTAAAAA
Statistics
Matches: 196, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
192 6 0.03
193 161 0.82
194 24 0.12
195 5 0.03
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (193 bp):
AGATTTTTAAAGTTTATTGCCTATTTTCATAGGAGCCATCTTCCAAAAAGATTTTTAAAGTTCAT
TGCCTATTTTCATAGGAGCCCTTTCTAAAAAAAGATTTTTAAAACTCACTACCTATCTTCATAGG
AGCTCTTTTCCAGACAGATTTTTAAAGTTTGTTACGTATTTTCATAAGAGCCTTATCAGACAG
Found at i:14458773 original size:13 final size:13
Alignment explanation
Indices: 14458755--14458802 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
14458745 AAATTCCATA
14458755 AAACCCTAACCCT
1 AAACCCTAACCCT
14458768 AAACCCTAATCCCT
1 AAACCCTAA-CCCT
* * *
14458782 AATCCTTAATCC-
1 AAACCCTAACCCT
14458794 AAACCCTAA
1 AAACCCTAA
14458803 ACAAAACATT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 7 0.24
13 11 0.38
14 11 0.38
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (13 bp):
AAACCCTAACCCT
Found at i:14458774 original size:7 final size:7
Alignment explanation
Indices: 14458755--14458858 Score: 65
Period size: 7 Copynumber: 15.6 Consensus size: 7
14458745 AAATTCCATA
14458755 AAACCCT
1 AAACCCT
14458762 -AACCCT
1 AAACCCT
14458768 AAACCCT
1 AAACCCT
*
14458775 AATCCCT
1 AAACCCT
*
14458782 -AATCCT
1 AAACCCT
* *
14458788 TAATCC-
1 AAACCCT
14458794 AAACCCT
1 AAACCCT
*
14458801 AAA--CA
1 AAACCCT
**
14458806 AAACATT
1 AAACCCT
14458813 AAACCCT
1 AAACCCT
**
14458820 AAACGGT
1 AAACCCT
*
14458827 AAACCTT
1 AAACCCT
*
14458834 AAACCTT
1 AAACCCT
*
14458841 AAACCAT
1 AAACCCT
14458848 AAACCCT
1 AAACCCT
14458855 AAAC
1 AAAC
14458859 TTCAAACCTT
Statistics
Matches: 76, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
5 4 0.05
6 14 0.18
7 58 0.76
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:14458916 original size:25 final size:25
Alignment explanation
Indices: 14458847--14458924 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
14458837 CCTTAAACCA
* *
14458847 TAAACCCTAAACTTCAAACCTTAAAT
1 TAAACCCTAAACCT-AAACCCTAAAT
* * * *
14458873 TGGAATCCTAAATCGAAACCCTAAAT
1 T-AAACCCTAAACCTAAACCCTAAAT
*
14458899 TAAACCCTAAACCTAAACCCCAAAT
1 TAAACCCTAAACCTAAACCCTAAAT
14458924 T
1 T
14458925 TTGAACCCTA
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
25 20 0.50
26 12 0.30
27 8 0.20
ACGTcount: A:0.45, C:0.28, G:0.04, T:0.23
Consensus pattern (25 bp):
TAAACCCTAAACCTAAACCCTAAAT
Found at i:14461326 original size:22 final size:22
Alignment explanation
Indices: 14461277--14461331 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
14461267 TTAAGTGATA
* * *
14461277 AACTTGGTAGTAAGTCATAGAT
1 AACTTAGTAGTAAATCATAAAT
14461299 AACTTAGTAGTAAATCATAAAT
1 AACTTAGTAGTAAATCATAAAT
* *
14461321 ATCTTAATAGT
1 AACTTAGTAGT
14461332 GAATTAGTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (22 bp):
AACTTAGTAGTAAATCATAAAT
Found at i:14461387 original size:21 final size:22
Alignment explanation
Indices: 14461340--14461380 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14461330 GTGAATTAGT
14461340 GATAATCTAATAGTAAATCACA
1 GATAATCTAATAGTAAATCACA
*
14461362 GATAATTTAATA-TAAATCA
1 GATAATCTAATAGTAAATCA
14461381 TCGATAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (22 bp):
GATAATCTAATAGTAAATCACA
Found at i:14461538 original size:20 final size:20
Alignment explanation
Indices: 14461513--14461550 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14461503 TATTAAATCA
* *
14461513 TTGATAATTTTGTAGTAATT
1 TTGATAACTTAGTAGTAATT
14461533 TTGATAACTTAGTAGTAA
1 TTGATAACTTAGTAGTAA
14461551 ATCACTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (20 bp):
TTGATAACTTAGTAGTAATT
Found at i:14461644 original size:22 final size:22
Alignment explanation
Indices: 14461619--14461734 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
14461609 ATAACTTTGA
14461619 AGTAAATAATCAATAAATTAAT
1 AGTAAATAATCAATAAATTAAT
* **
14461641 AGTAAATCAATTAA-ACGTT-AT
1 AGTAAAT-AATCAATAAATTAAT
* *** * *
14461662 AATAAGCCATCAATAACTTAGT
1 AGTAAATAATCAATAAATTAAT
* * *
14461684 AGAAAATCATTC-ATAACTTAAT
1 AGTAAAT-AATCAATAAATTAAT
*
14461706 AGTAAATTATTC-ATAAATTAAT
1 AGTAAA-TAATCAATAAATTAAT
14461728 AGTAAAT
1 AGTAAAT
14461735 CATTGATAAT
Statistics
Matches: 69, Mismatches: 20, Indels: 11
0.69 0.20 0.11
Matches are distributed among these distances:
20 4 0.06
21 10 0.14
22 47 0.68
23 8 0.12
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.33
Consensus pattern (22 bp):
AGTAAATAATCAATAAATTAAT
Found at i:14461743 original size:22 final size:22
Alignment explanation
Indices: 14461687--14461829 Score: 96
Period size: 22 Copynumber: 6.6 Consensus size: 22
14461677 ACTTAGTAGA
* *
14461687 AAATCATTCATAACTTAATAGT
1 AAATCATTGATAAATTAATAGT
* *
14461709 AAATTATTCATAAATTAATAGT
1 AAATCATTGATAAATTAATAGT
* * *
14461731 AAATCATTGATAATTTAGTA-A
1 AAATCATTGATAAATTAATAGT
* **
14461752 AAACTCTTTGATAGCTTAATAGT
1 AAA-TCATTGATAAATTAATAGT
* * * *
14461775 AAATCACTAATAACA-TAGTAAT
1 AAATCATTGATAA-ATTAATAGT
*
14461797 AAATCATTGAT-AA-TAATTGT
1 AAATCATTGATAAATTAATAGT
*
14461817 CAATCATTGATAA
1 AAATCATTGATAA
14461830 CTAGTTTTTT
Statistics
Matches: 92, Mismatches: 25, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
20 15 0.16
21 5 0.05
22 69 0.75
23 3 0.03
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (22 bp):
AAATCATTGATAAATTAATAGT
Found at i:14461771 original size:66 final size:66
Alignment explanation
Indices: 14461674--14461810 Score: 161
Period size: 66 Copynumber: 2.1 Consensus size: 66
14461664 TAAGCCATCA
* * * * *
14461674 ATAACTTAGTAGAAAATCATTCATAACTTAATAGTAAATTATTCATAA-ATTAATAGTAAATCAT
1 ATAATTTAGTAGAAAATCATTCATAACTTAATAGTAAATCACTAATAACA-TAATAATAAATCAT
14461738 TG
65 TG
* * * *
14461740 ATAATTTAGTA-AAAACTCTTTGATAGCTTAATAGTAAATCACTAATAACATAGTAATAAATCAT
1 ATAATTTAGTAGAAAA-TCATTCATAACTTAATAGTAAATCACTAATAACATAATAATAAATCAT
14461804 TG
65 TG
14461806 ATAAT
1 ATAAT
14461811 AATTGTCAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
65 4 0.07
66 55 0.92
67 1 0.02
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (66 bp):
ATAATTTAGTAGAAAATCATTCATAACTTAATAGTAAATCACTAATAACATAATAATAAATCATT
G
Found at i:14461794 original size:44 final size:44
Alignment explanation
Indices: 14461723--14461808 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
14461713 TATTCATAAA
* * ** *
14461723 TTAATAGTAAATCATTGATAATTTAGTAA-AAACTCTTTGATAGC
1 TTAATAGTAAATCACTAATAACATAGTAATAAA-TCATTGATAGC
14461767 TTAATAGTAAATCACTAATAACATAGTAATAAATCATTGATA
1 TTAATAGTAAATCACTAATAACATAGTAATAAATCATTGATA
14461809 ATAATTGTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 33 0.92
45 3 0.08
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (44 bp):
TTAATAGTAAATCACTAATAACATAGTAATAAATCATTGATAGC
Found at i:14465895 original size:3 final size:3
Alignment explanation
Indices: 14465889--14465917 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14465879 AATAATAATA
14465889 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
14465918 AATAGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:14465929 original size:3 final size:3
Alignment explanation
Indices: 14465916--14465960 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
14465906 GATGATGATG
*
14465916 ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14465961 TCATCATCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14467492 original size:2 final size:2
Alignment explanation
Indices: 14467485--14467521 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
14467475 TGGTGTATGT
*
14467485 TA TA TA TA TA -A TA TA TA TA TA TA TA T- TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14467522 TTCATCCATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:14467503 original size:13 final size:12
Alignment explanation
Indices: 14467485--14467521 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
14467475 TGGTGTATGT
14467485 TATATATATA-A
1 TATATATATATA
14467496 TATATATATATA
1 TATATATATATA
*
14467508 TAT-TATATTTA
1 TATATATATATA
14467519 TAT
1 TAT
14467522 TTCATCCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
TATATATATATA
Found at i:14467505 original size:15 final size:15
Alignment explanation
Indices: 14467485--14467521 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
14467475 TGGTGTATGT
14467485 TATATATATAATATA
1 TATATATATAATATA
*
14467500 TATATATATATTATA
1 TATATATATAATATA
*
14467515 TTTATAT
1 TATATAT
14467522 TTCATCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATATATAATATA
Found at i:14475703 original size:15 final size:16
Alignment explanation
Indices: 14475664--14475705 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
14475654 TAAATATTAA
14475664 AGTATTAAAAATGATTT
1 AGTATT-AAAATGATTT
* *
14475681 ATTATTAAAATTA-TT
1 AGTATTAAAATGATTT
14475696 AGTATTAAAA
1 AGTATTAAAA
14475706 AATAATTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 11 0.50
16 6 0.27
17 5 0.23
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (16 bp):
AGTATTAAAATGATTT
Found at i:14475826 original size:28 final size:29
Alignment explanation
Indices: 14475790--14475939 Score: 109
Period size: 28 Copynumber: 5.1 Consensus size: 29
14475780 TTTATTACTA
14475790 TATTAATATATTATTATTA-AATATTATT
1 TATTAATATATTATTATTATAATATTATT
* *
14475818 TATTGATATAATATTATTTATGAATA-TA-T
1 TATTAATATATTATTA-TTAT-AATATTATT
*
14475847 TA-TAATATTATTTATTAATGTATTATATTAATT
1 TATTAATA-TA-TTATT-AT-TATAATATT-ATT
* *
14475880 GTA-TATTAT-TTATTCA-TATAATAGTATT
1 -TATTAATATATTATT-ATTATAATATTATT
*
14475908 TATTAATATATTA-TAATATAATATTATT
1 TATTAATATATTATTATTATAATATTATT
14475936 TATT
1 TATT
14475940 TATTAATATA
Statistics
Matches: 97, Mismatches: 11, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
27 3 0.03
28 42 0.43
29 18 0.19
30 10 0.10
31 15 0.15
32 1 0.01
33 2 0.02
34 6 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (29 bp):
TATTAATATATTATTATTATAATATTATT
Found at i:14475832 original size:18 final size:18
Alignment explanation
Indices: 14475778--14475956 Score: 122
Period size: 18 Copynumber: 10.2 Consensus size: 18
14475768 AAAATAAAAC
* * *
14475778 TATTTATTACTATATTAA
1 TATTTATTAATATAATAT
*
14475796 TATATTATTATTA-AATAT
1 TAT-TTATTAATATAATAT
*
14475814 TATTTATTGATATAATAT
1 TATTTATTAATATAATAT
* *
14475832 TATTTATGAATATATTAT
1 TATTTATTAATATAATAT
* * *
14475850 AATATTATTTAT-TAAT-G
1 TAT-TTATTAATATAATAT
*
14475867 TATTATATTAAT-TGTATAT
1 TATT-TATTAATAT-AATAT
* *
14475886 TATTTATTCATATAATAG
1 TATTTATTAATATAATAT
*
14475904 TATTTATTAATATATTA-
1 TATTTATTAATATAATAT
* *
14475921 TA-ATA-TAATATTAT-T
1 TATTTATTAATATAATAT
14475936 TATTTATTAATATAATAT
1 TATTTATTAATATAATAT
14475954 TAT
1 TAT
14475957 ATATAAATAA
Statistics
Matches: 123, Mismatches: 27, Indels: 22
0.72 0.16 0.13
Matches are distributed among these distances:
15 9 0.07
16 5 0.04
17 26 0.21
18 64 0.52
19 19 0.15
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TATTTATTAATATAATAT
Found at i:14475848 original size:54 final size:55
Alignment explanation
Indices: 14475778--14475965 Score: 157
Period size: 64 Copynumber: 3.2 Consensus size: 55
14475768 AAAATAAAAC
* *
14475778 TATTTATTACTATATTAATATATTATTATTAA-ATATTATTTATTGATATAATAT
1 TATTTATAAATATATTAATATATTATTATTAATATATTATTTATTGATATAATAT
* * *
14475832 TATTTATGAATATATT-ATAATATTATTTATTAATGTATTATATTAATTG-TATATTATT
1 TATTTATAAATATATTAAT-ATATTA-TTATTAATATATTAT-TT-ATTGATATAATA-T
* *
14475890 TATTCATATAATAGTATTTATTAATATATTATAATATAATATTATTTATTTATTAATATAATAT
1 TATT--TATAA-A-TA--TATTAATATATTATTAT-TAATA-TA-TTATTTATTGATATAATAT
*
14475954 TATATATAAATA
1 TATTTATAAATA
14475966 AAATTATATT
Statistics
Matches: 107, Mismatches: 10, Indels: 28
0.74 0.07 0.19
Matches are distributed among these distances:
53 2 0.02
54 20 0.19
55 7 0.07
56 6 0.06
57 8 0.07
58 9 0.08
60 6 0.06
61 2 0.02
62 7 0.07
63 3 0.03
64 21 0.20
65 12 0.11
66 4 0.04
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (55 bp):
TATTTATAAATATATTAATATATTATTATTAATATATTATTTATTGATATAATAT
Found at i:14475852 original size:23 final size:23
Alignment explanation
Indices: 14475824--14475944 Score: 102
Period size: 23 Copynumber: 5.1 Consensus size: 23
14475814 TATTTATTGA
*
14475824 TATAATATTATTTATGAATATAT
1 TATAATATTATTTATTAATATAT
*
14475847 TATAATATTATTTATTAATGTAT
1 TATAATATTATTTATTAATATAT
* *
14475870 TATATTAATTGTATATTATTTAT-TCA-
1 TATAAT-A-T-TAT-TTATTAATAT-AT
*
14475896 TATAATAGTATTTATTAATATAT
1 TATAATATTATTTATTAATATAT
* * *
14475919 TATAATATAATATTATTTATTTAT
1 TATAATATTAT-TTATTAATATAT
14475943 TA
1 TA
14475945 ATATAATATT
Statistics
Matches: 79, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
22 8 0.10
23 39 0.49
24 13 0.16
25 2 0.03
26 9 0.11
27 8 0.10
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (23 bp):
TATAATATTATTTATTAATATAT
Found at i:14475899 original size:72 final size:73
Alignment explanation
Indices: 14475810--14475944 Score: 209
Period size: 72 Copynumber: 1.9 Consensus size: 73
14475800 TTATTATTAA
* * *
14475810 ATATTATTTATTGATATAATATTATTTATGAATATATTATAATATTAT-TTATTAATGTATTATA
1 ATATTATTTATTCATATAATAGTATTTATGAATATATTATAATATAATATTATTAATGTATTATA
14475874 TTAATTGT
66 TTAATTGT
* * *
14475882 ATATTATTTATTCATATAATAGTATTTATTAATATATTATAATATAATATTATTTATTTATTA
1 ATATTATTTATTCATATAATAGTATTTATGAATATATTATAATATAATATTATTAATGTATTA
14475945 ATATAATATT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
72 44 0.79
73 12 0.21
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.56
Consensus pattern (73 bp):
ATATTATTTATTCATATAATAGTATTTATGAATATATTATAATATAATATTATTAATGTATTATA
TTAATTGT
Found at i:14475912 original size:49 final size:50
Alignment explanation
Indices: 14475823--14475952 Score: 158
Period size: 49 Copynumber: 2.6 Consensus size: 50
14475813 TTATTTATTG
** * * *
14475823 ATATAATATTATTTATGAATATATTATAATATTATTTATTAATGTATTAT-
1 ATATAATATTATTTATTTAT-TAATATAATAGTATTTATTAATATATTATA
*
14475873 AT-TAAT-TGTATATTATTTATTCATATAATAGTATTTATTAATATATTATA
1 ATATAATAT-TAT-TTATTTATTAATATAATAGTATTTATTAATATATTATA
14475923 ATATAATATTATTTATTTATTAATATAATA
1 ATATAATATTATTTATTTATTAATATAATA
14475953 TTATATATAA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
48 1 0.01
49 32 0.47
50 27 0.40
51 7 0.10
52 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (50 bp):
ATATAATATTATTTATTTATTAATATAATAGTATTTATTAATATATTATA
Found at i:14476577 original size:11 final size:12
Alignment explanation
Indices: 14476562--14476605 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
14476552 TCTTAAAAAA
14476562 AGAAAAAAAGAG
1 AGAAAAAAAGAG
14476574 -GAAAAAAAGAG
1 AGAAAAAAAGAG
* *
14476585 AGAAAATATGAG
1 AGAAAAAAAGAG
14476597 AGAAAAAAA
1 AGAAAAAAA
14476606 TGAAAAAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.05
Consensus pattern (12 bp):
AGAAAAAAAGAG
Found at i:14476598 original size:14 final size:13
Alignment explanation
Indices: 14476562--14476608 Score: 57
Period size: 11 Copynumber: 3.9 Consensus size: 13
14476552 TCTTAAAAAA
14476562 AGAAAAAAA-GAG
1 AGAAAAAAATGAG
14476574 -GAAAAAAA-GAG
1 AGAAAAAAATGAG
*
14476585 AG-AAAATATGAG
1 AGAAAAAAATGAG
14476597 AGAAAAAAATGA
1 AGAAAAAAATGA
14476609 AAAAAAGACA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 16 0.53
12 6 0.20
13 8 0.27
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.06
Consensus pattern (13 bp):
AGAAAAAAATGAG
Found at i:14478175 original size:105 final size:105
Alignment explanation
Indices: 14478059--14478271 Score: 356
Period size: 105 Copynumber: 2.0 Consensus size: 105
14478049 TGCGTTAGCC
14478059 TTTATTATTTATACATATTTTATAGATATTCTAATTTATTACTATAATATCAAGTACTTAAAATA
1 TTTATTATTTATACATATTTTATAGATATTCTAATTTATTACTATAATATCAAGTACTTAAAATA
*
14478124 TTTAGTCATAGTCTTTTTACTATACTTTTACATACA-TTT
66 TTTAGTCATAGTCTTTTTACTATACTTTTAAATACACTTT
* * * *
14478163 TTTATTATTTTATGCTTATTTTATAGATATTTTAATTTATTACTATAATATCAAGTACTTAAACT
1 TTTATTA-TTTATACATATTTTATAGATATTCTAATTTATTACTATAATATCAAGTACTTAAAAT
*
14478228 ATTTAGTCATAGTTTTTTTACTATACTTTTAAATACACTTT
65 ATTTAGTCATAGTCTTTTTACTATACTTTTAAATACACTTT
14478269 TTT
1 TTT
14478272 CAATCAAATT
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 7 0.07
105 88 0.87
106 6 0.06
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.53
Consensus pattern (105 bp):
TTTATTATTTATACATATTTTATAGATATTCTAATTTATTACTATAATATCAAGTACTTAAAATA
TTTAGTCATAGTCTTTTTACTATACTTTTAAATACACTTT
Found at i:14481185 original size:88 final size:88
Alignment explanation
Indices: 14481004--14481273 Score: 280
Period size: 88 Copynumber: 3.0 Consensus size: 88
14480994 ATTGAATTTT
* *
14481004 AAAAAATAAAAATTTTCATAATATATTTTTTTAACAAGGAATACA-TATTTATTTTAAAAATGCA
1 AAAAAATAAAAATTTTCATAATATA--TTTTTAACAAGGAAT-CATTTTTTATCTTAAAAATGCA
* * * * *
14481068 GTATTTGTTGAAAGTATATAATTCT-
63 ATTTTTGTTAAAATTATAGAATTCTG
*** * * * *
14481093 AAAAAATAATTTTTTTTATAATATATTTTTAACAAGGATTGCATTTTTTATCTTAAAAACGTAAT
1 AAAAAATAAAAATTTTCATAATATATTTTTAACAAGGAAT-CATTTTTTATCTTAAAAATGCAAT
*
14481158 TTTTGTTAAAATTATA-AAATCTG
65 TTTTGTTAAAATTATAGAATTCTG
** *
14481181 -AAAAATAAAAATTTTCATAATATATATATTTAACAACACAAT-ATTTTTTATCTTAAAAATACA
1 AAAAAATAAAAATTTTCATAATATAT-T-TTTAACAA-GGAATCATTTTTTATCTTAAAAATGCA
14481244 ATTTTTGTTAAAATTATAGAATTCTG
63 ATTTTTGTTAAAATTATAGAATTCTG
14481270 AAAA
1 AAAA
14481274 TTTTTTTTCA
Statistics
Matches: 148, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
87 42 0.28
88 66 0.45
89 35 0.24
90 5 0.03
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (88 bp):
AAAAAATAAAAATTTTCATAATATATTTTTAACAAGGAATCATTTTTTATCTTAAAAATGCAATT
TTTGTTAAAATTATAGAATTCTG
Found at i:14481360 original size:71 final size:72
Alignment explanation
Indices: 14481285--14481429 Score: 184
Period size: 72 Copynumber: 2.0 Consensus size: 72
14481275 TTTTTTTCAT
* * * * * * *
14481285 AATATAGTTTCAATAGAAACAATGTTTTT-AATTTAAAAATGTTGTATTTGTTGAAATTATAGAA
1 AATATAGTTTCAACAAAAACAACGTTTTTAAATTTAAAAATGCTATATTTATTGAAACTATAGAA
14481349 TTATGAA
66 TTATGAA
* * *
14481356 AATATAGTTTCAACAAAAACCACGTTTTTAAATTTAAAAATGCTATCTTTATTGAAACTATATAA
1 AATATAGTTTCAACAAAAACAACGTTTTTAAATTTAAAAATGCTATATTTATTGAAACTATAGAA
*
14481421 TTTTGAA
66 TTATGAA
14481428 AA
1 AA
14481430 ATATTTTTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
71 25 0.40
72 37 0.60
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (72 bp):
AATATAGTTTCAACAAAAACAACGTTTTTAAATTTAAAAATGCTATATTTATTGAAACTATAGAA
TTATGAA
Found at i:14482834 original size:11 final size:11
Alignment explanation
Indices: 14482817--14482846 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14482807 ATCTCATAAA
14482817 AGATTTGTTTG
1 AGATTTGTTTG
*
14482828 GGATTTGTTTG
1 AGATTTGTTTG
14482839 AGATTTGT
1 AGATTTGT
14482847 CAGATATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (11 bp):
AGATTTGTTTG
Found at i:14482980 original size:52 final size:52
Alignment explanation
Indices: 14482871--14483028 Score: 178
Period size: 52 Copynumber: 3.0 Consensus size: 52
14482861 TGGACAAAAA
* * * *
14482871 GACTTACAAAAGAAGAATT-TCAAGAGAAAGAA-GATTTTTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCT-AAAAG-AAGAAGGA-TTCTTAATAGGAAAGTTT
* *
14482924 GACTTGCAAGAGAAGAATTCTAAAAGAA-AAGGGATTCTTAATAGGCAAGTTT
1 GACTTACAAGAGAAGAATTCTAAAAGAAGAA-GGATTCTTAATAGGAAAGTTT
* * *
14482976 GACTTACAGGAGAAGAATTCTAAGAGAAGAAGGATTCTTAATGGGAAAGTTT
1 GACTTACAAGAGAAGAATTCTAAAAGAAGAAGGATTCTTAATAGGAAAGTTT
14483028 G
1 G
14483029 TATGGTTATA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
51 2 0.02
52 63 0.69
53 25 0.27
54 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCTAAAAGAAGAAGGATTCTTAATAGGAAAGTTT
Found at i:14484796 original size:21 final size:20
Alignment explanation
Indices: 14484754--14484796 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
14484744 TAAAGATATT
*
14484754 TTTTTAATTAAATAAAATAA
1 TTTTTAATTAAATAAAACAA
*
14484774 TTTTTAATTAAAATAATACAA
1 TTTTTAATT-AAATAAAACAA
14484795 TT
1 TT
14484797 AAAAAATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTTTAATTAAATAAAACAA
Found at i:14486369 original size:2 final size:2
Alignment explanation
Indices: 14486362--14486392 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14486352 AGTTTTATTT
14486362 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14486393 CTGTACATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14486683 original size:10 final size:10
Alignment explanation
Indices: 14486670--14486737 Score: 57
Period size: 10 Copynumber: 6.3 Consensus size: 10
14486660 ACAAAATACG
*
14486670 AAATACAGAA
1 AAATACAAAA
14486680 AAATACCAAAA
1 AAATA-CAAAA
14486691 ATAATACAAAA
1 A-AATACAAAA
*
14486702 TACAAAACAAATA
1 -A-AATACAAA-A
14486715 CAAA-ACAAAA
1 -AAATACAAAA
14486725 AAATACAAAA
1 AAATACAAAA
14486735 AAA
1 AAA
14486738 AGAACAGAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
9 3 0.06
10 15 0.31
11 15 0.31
12 14 0.29
13 2 0.04
ACGTcount: A:0.75, C:0.13, G:0.01, T:0.10
Consensus pattern (10 bp):
AAATACAAAA
Found at i:14486696 original size:29 final size:29
Alignment explanation
Indices: 14486664--14486734 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
14486654 AATATTACAA
* *
14486664 AATACGAAATACAGAA-AAATACCAAAAAT
1 AATACAAAATACAAAACAAATA-CAAAAAT
*
14486693 AATACAAAATACAAAACAAATAC-AAAAC
1 AATACAAAATACAAAACAAATACAAAAAT
14486721 AA-A-AAAATACAAAA
1 AATACAAAATACAAAA
14486735 AAAAGAACAG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
26 11 0.29
27 1 0.03
28 6 0.16
29 15 0.39
30 5 0.13
ACGTcount: A:0.72, C:0.14, G:0.03, T:0.11
Consensus pattern (29 bp):
AATACAAAATACAAAACAAATACAAAAAT
Found at i:14486711 original size:12 final size:12
Alignment explanation
Indices: 14486696--14486724 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
14486686 CAAAAATAAT
14486696 ACAAAATACAAA
1 ACAAAATACAAA
14486708 AC-AAATACAAA
1 ACAAAATACAAA
14486719 ACAAAA
1 ACAAAA
14486725 AAATACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.76, C:0.17, G:0.00, T:0.07
Consensus pattern (12 bp):
ACAAAATACAAA
Found at i:14486714 original size:18 final size:17
Alignment explanation
Indices: 14486636--14486734 Score: 73
Period size: 18 Copynumber: 5.9 Consensus size: 17
14486626 TCAATTGTCC
14486636 CAAAAAAATA-AAAATA
1 CAAAAAAATACAAAATA
* * *
14486652 -ATAATATTACAAAATA
1 CAAAAAAATACAAAATA
* * *
14486668 CGAAATACAGA-AAAATA
1 C-AAAAAAATACAAAATA
14486685 CCAAAAATAATACAAAATA
1 -CAAAAA-AATACAAAATA
14486704 CAAAACAAATAC-AAA-A
1 CAAAA-AAATACAAAATA
14486720 CAAAAAAATACAAAA
1 CAAAAAAATACAAAA
14486735 AAAAGAACAG
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
15 12 0.19
16 15 0.24
17 13 0.21
18 16 0.25
19 7 0.11
ACGTcount: A:0.72, C:0.12, G:0.02, T:0.14
Consensus pattern (17 bp):
CAAAAAAATACAAAATA
Found at i:14486752 original size:45 final size:46
Alignment explanation
Indices: 14486662--14486757 Score: 108
Period size: 45 Copynumber: 2.1 Consensus size: 46
14486652 ATAATATTAC
* * * *
14486662 AAAATACGAAATACAGAAAAATACCAAAAATAATACAAAATACAAA
1 AAAATACGAAATACAAAAAAATACCAAAAAAAAAACAAAAAACAAA
*
14486708 ACAAATAC-AAA-ACAAAAAAATA-CAAAAAAAAGAACAGAAAACAAA
1 A-AAATACGAAATACAAAAAAATACCAAAAAAAA-AACAAAAAACAAA
14486753 AAAAT
1 AAAAT
14486758 TGAGGATCGC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
44 12 0.28
45 21 0.49
46 4 0.09
47 6 0.14
ACGTcount: A:0.74, C:0.12, G:0.04, T:0.09
Consensus pattern (46 bp):
AAAATACGAAATACAAAAAAATACCAAAAAAAAAACAAAAAACAAA
Found at i:14487251 original size:12 final size:11
Alignment explanation
Indices: 14487229--14487297 Score: 56
Period size: 11 Copynumber: 6.3 Consensus size: 11
14487219 ACAAAATACG
14487229 AAATACAAAAA
1 AAATACAAAAA
14487240 AAATACCAAAAA
1 AAATA-CAAAAA
*
14487252 TAATAC----A
1 AAATACAAAAA
*
14487259 AAATACAAAAC
1 AAATACAAAAA
14487270 AAATACAAAACAAA
1 AAATAC--AA-AAA
14487284 AAATACAAAAA
1 AAATACAAAAA
14487295 AAA
1 AAA
14487298 AGAACAGAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
7 6 0.13
11 18 0.39
12 12 0.26
13 2 0.04
14 8 0.17
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (11 bp):
AAATACAAAAA
Found at i:14487263 original size:30 final size:29
Alignment explanation
Indices: 14487223--14487279 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
14487213 AATATTACAA
*
14487223 AATACGAAATACAAAAAAAATACCAAAAAT
1 AATACAAAATACAAAAAAAATA-CAAAAAT
*
14487253 AATACAAAATACAAAACAAATACAAAA
1 AATACAAAATACAAAAAAAATACAAAA
14487280 CAAAAAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.72, C:0.14, G:0.02, T:0.12
Consensus pattern (29 bp):
AATACAAAATACAAAAAAAATACAAAAAT
Found at i:14487274 original size:18 final size:18
Alignment explanation
Indices: 14487218--14487279 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
14487208 ATAATAATAT
14487218 TACAAAATACGAAATACAAA
1 TACAAAATAC-AAA-ACAAA
14487238 -A-AAAATACCAAAA-ATAA
1 TACAAAATA-CAAAACA-AA
14487255 TACAAAATACAAAACAAA
1 TACAAAATACAAAACAAA
14487273 TACAAAA
1 TACAAAA
14487280 CAAAAAATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
16 1 0.03
17 3 0.08
18 24 0.65
19 9 0.24
ACGTcount: A:0.71, C:0.15, G:0.02, T:0.13
Consensus pattern (18 bp):
TACAAAATACAAAACAAA
Found at i:14487503 original size:560 final size:563
Alignment explanation
Indices: 14486429--14488119 Score: 3185
Period size: 560 Copynumber: 3.0 Consensus size: 563
14486419 AGATTTATTT
14486429 AATTGTACTTTTATAAGTTAGTTTATTTGTTGATTAGTTGATTTATTTGATTCAATTTATTGGTT
1 AATTGTACTTTTATAAGTTAGTTTATTTGTTGATTAGTTGATTTATTTGATTCAATTTATTGGTT
14486494 TTTATCAGTATTACATTCCTTGCATATGATTATAATTTCTTATAAAATTATTTTATAATAATTTT
66 TTTATCAGTATTACATTCCTTGCATATGATTATAATTTCTTATAAAATTATTTTATAATAATTTT
* *
14486559 ATAAAAAACAATTTTTAATTTTGCAATTTTTTTAATTCATATGATTTCAGATTATGTAGTATGGA
131 ATAAAAAACTATTTTTAATTTTGTAATTTTTTTAATTCATATGATTTCAGATTATGTAGTATGGA
*
14486624 CATCAATTGTCCCAAAAAAATAAAAATAATAATATTACAAAATACGAAATAC-AGAAAAATACCA
196 CATCAATTGTCCC--AAAAATAAAAATAATAATATTACAAAATACGAAATACAAAAAAAATACCA
14486688 AAAATAATACAAAATACAAAACAAATACAAAACAAAAAAATAC-AAAAAAAAGAACAGAAAACAA
259 AAAATAATACAAAATACAAAACAAATACAAAACAAAAAAATACAAAAAAAAAGAACAGAAAACAA
*
14486752 AAAAATTGAGGATCGCAGTGGTGCCCTCCTCCGCACCACTGCCACAAAGCCCTACACCTCAACCT
324 AAAAATTGAGGATCGCAGTGGTGCCCTCCTCCACACCACTGCCACAAAGCCCTACACCTCAACCT
14486817 TCTGATCACTATACTCTACCCTTCACCCCTCTAATTACTCATCCCGTTGACAAATCGTCAAATAA
389 TCTGATCACTATACTCTACCCTTCACCCCTCTAATTACTCATCCCGTTGACAAATCGTCAAATAA
* * *
14486882 GACAAAAACGAATAAAAGATGCATGGGGCTCGTGCCTACACCCAATGCTGAGCCCCATGCCCTTC
454 GACAAAAACGAATAAAAGATGCATGGGGCTCGTGCTTACACCCCATGCCGAGCCCCATGCCCTTC
14486947 CCTCAAATACGCACGGTCGGAGCTCTATAAATAGAGCTCCTAGAC
519 CCTCAAATACGCACGGTCGGAGCTCTATAAATAGAGCTCCTAGAC
14486992 AATTGTACTTTTATAAGTTAGTTTATTTGTTGATTAGTTGATTTATTTGATTCAATTTATTGGTT
1 AATTGTACTTTTATAAGTTAGTTTATTTGTTGATTAGTTGATTTATTTGATTCAATTTATTGGTT
*
14487057 TTTATCAGTATTACATTCCTTGCATATGATTATAATTTCTTATAAAATTATTTTACAATAATTTT
66 TTTATCAGTATTACATTCCTTGCATATGATTATAATTTCTTATAAAATTATTTTATAATAATTTT
14487122 ATAAAAAACTATTTTTAATTTTGTAATTTTTTTAATTCATATGATTTCAGATTATGTAGTATGGA
131 ATAAAAAACTATTTTTAATTTTGTAATTTTTTTAATTCATATGATTTCAGATTATGTAGTATGGA
14487187 CATCAATTGTCCC-AAAA-AAAAATAATAATATTACAAAATACGAAATACAAAAAAAATACCAAA
196 CATCAATTGTCCCAAAAATAAAAATAATAATATTACAAAATACGAAATACAAAAAAAATACCAAA
14487250 AATAATACAAAATACAAAACAAATACAAAAC-AAAAAATACAAAAAAAAAGAACAGAAAACAAAA
261 AATAATACAAAATACAAAACAAATACAAAACAAAAAAATACAAAAAAAAAGAACAGAAAACAAAA
* *
14487314 AAATTGAGGATCGTAGTGGTGCCCTCCTCCACACCACTGCCACAAAGCCCTATACCTCAACCTTC
326 AAATTGAGGATCGCAGTGGTGCCCTCCTCCACACCACTGCCACAAAGCCCTACACCTCAACCTTC
14487379 TGATCACTATACTCTACCCTTCACCCCTCTAATTACTCATCCCGTTGACAAATCGTCAAATAAGA
391 TGATCACTATACTCTACCCTTCACCCCTCTAATTACTCATCCCGTTGACAAATCGTCAAATAAGA
*
14487444 CAAAAACGAATAAAAGATGCATGGGGCTCGTGCTTACACCCCATGCCGAGCCACATGCCCTTCCC
456 CAAAAACGAATAAAAGATGCATGGGGCTCGTGCTTACACCCCATGCCGAGCCCCATGCCCTTCCC
14487509 TCAAATACGCACGGTCGGAGCTCTATAAATAGAGCTCCTAGAC
521 TCAAATACGCACGGTCGGAGCTCTATAAATAGAGCTCCTAGAC
14487552 AATTGTACTTTTATAAGTTAGTTTATTTGTTGATTAGTTGATTTATTTGATTCAATTTATTGGTT
1 AATTGTACTTTTATAAGTTAGTTTATTTGTTGATTAGTTGATTTATTTGATTCAATTTATTGGTT
14487617 TTTATCAGTATTACATTCCTTGCATATGATTATAATTTCTTATAAAATTATTTTATAATAATTTT
66 TTTATCAGTATTACATTCCTTGCATATGATTATAATTTCTTATAAAATTATTTTATAATAATTTT
14487682 ATAAAAAACTATTTTTAATTTTGTAATTTTTTTAATTCATATGATTTCAGATTATGTAGTATGGA
131 ATAAAAAACTATTTTTAATTTTGTAATTTTTTTAATTCATATGATTTCAGATTATGTAGTATGGA
14487747 CATCAATTGTCCCAAAAAAATAAAAATAATAATATTACAAAATACGAAATACAAAAAAAATACCA
196 CATCAATTGTCCC--AAAAATAAAAATAATAATATTACAAAATACGAAATACAAAAAAAATACCA
14487812 AAAATAATACAAAATACAAAACAAATACAAAACAAAAAAATACAAAAAAAAAAGAACAGAAAACA
259 AAAATAATACAAAATACAAAACAAATACAAAACAAAAAAATAC-AAAAAAAAAGAACAGAAAACA
14487877 AAAAAATTGAGGATCGCAGTGGTGCCCTCCTCCACACCACTGCCACAAAGCCCTACACCTCAACC
323 AAAAAATTGAGGATCGCAGTGGTGCCCTCCTCCACACCACTGCCACAAAGCCCTACACCTCAACC
*
14487942 TTCTGATCACTATACTCTACCCTTCACCCCTCTAATTACTCATCTCGTTGACAAATCGTCAAATA
388 TTCTGATCACTATACTCTACCCTTCACCCCTCTAATTACTCATCCCGTTGACAAATCGTCAAATA
14488007 AGACAAAAACGAATAAAAGATGCATGGGGCTCGTGCTTACACCCCATGCCGAGCCCCATGCCCTT
453 AGACAAAAACGAATAAAAGATGCATGGGGCTCGTGCTTACACCCCATGCCGAGCCCCATGCCCTT
*
14488072 CCCTCAAATATGCACGGTCGGAGCTCTATAAATAGAGCTCCTAGAC
518 CCCTCAAATACGCACGGTCGGAGCTCTATAAATAGAGCTCCTAGAC
14488118 AA
1 AA
14488120 ACCAAAGAAG
Statistics
Matches: 1103, Mismatches: 17, Indels: 13
0.97 0.02 0.01
Matches are distributed among these distances:
559 40 0.04
560 509 0.46
563 209 0.19
564 77 0.07
565 9 0.01
566 259 0.23
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (563 bp):
AATTGTACTTTTATAAGTTAGTTTATTTGTTGATTAGTTGATTTATTTGATTCAATTTATTGGTT
TTTATCAGTATTACATTCCTTGCATATGATTATAATTTCTTATAAAATTATTTTATAATAATTTT
ATAAAAAACTATTTTTAATTTTGTAATTTTTTTAATTCATATGATTTCAGATTATGTAGTATGGA
CATCAATTGTCCCAAAAATAAAAATAATAATATTACAAAATACGAAATACAAAAAAAATACCAAA
AATAATACAAAATACAAAACAAATACAAAACAAAAAAATACAAAAAAAAAGAACAGAAAACAAAA
AAATTGAGGATCGCAGTGGTGCCCTCCTCCACACCACTGCCACAAAGCCCTACACCTCAACCTTC
TGATCACTATACTCTACCCTTCACCCCTCTAATTACTCATCCCGTTGACAAATCGTCAAATAAGA
CAAAAACGAATAAAAGATGCATGGGGCTCGTGCTTACACCCCATGCCGAGCCCCATGCCCTTCCC
TCAAATACGCACGGTCGGAGCTCTATAAATAGAGCTCCTAGAC
Found at i:14487808 original size:18 final size:16
Alignment explanation
Indices: 14487785--14487882 Score: 73
Period size: 15 Copynumber: 6.2 Consensus size: 16
14487775 ATAATATTAC
14487785 AAAATACGAAATACAAAA
1 AAAATAC-AAA-ACAAAA
14487803 AAAATAC----CAAAA
1 AAAATACAAAACAAAA
*
14487815 ATAATACAAAATACAAAA
1 AAAATAC-AAA-ACAAAA
*
14487833 CAAATACAAAAC-AAA
1 AAAATACAAAACAAAA
14487848 AAAATACAAAA-AAAA
1 AAAATACAAAACAAAA
* *
14487863 AAGAACAGAAAACAAAA
1 AA-AATACAAAACAAAA
14487880 AAA
1 AAA
14487883 TTGAGGATCG
Statistics
Matches: 65, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
12 11 0.17
15 18 0.28
16 10 0.15
17 9 0.14
18 17 0.26
ACGTcount: A:0.77, C:0.12, G:0.03, T:0.08
Consensus pattern (16 bp):
AAAATACAAAACAAAA
Found at i:14487815 original size:12 final size:11
Alignment explanation
Indices: 14487793--14487862 Score: 65
Period size: 11 Copynumber: 6.3 Consensus size: 11
14487783 ACAAAATACG
14487793 AAATACAAAAA
1 AAATACAAAAA
14487804 AAATACCAAAAA
1 AAATA-CAAAAA
*
14487816 TAATACAAAATA
1 AAATACAAAA-A
*
14487828 CAAA-ACAAATAC
1 -AAATACAAA-AA
14487840 AAA-AC-AAAA
1 AAATACAAAAA
14487849 AAATACAAAAA
1 AAATACAAAAA
14487860 AAA
1 AAA
14487863 AAGAACAGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
9 4 0.08
10 4 0.08
11 22 0.45
12 16 0.33
13 3 0.06
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (11 bp):
AAATACAAAAA
Found at i:14487823 original size:37 final size:34
Alignment explanation
Indices: 14487759--14487858 Score: 100
Period size: 37 Copynumber: 2.9 Consensus size: 34
14487749 TCAATTGTCC
* * *
14487759 CAAAA-AAAT-AAAAATAATAATATTACAAAATA
1 CAAAACAAATAAAAAACAAAAATAATACAAAATA
14487791 CGAAATACAAA-AAAAATACCAAAAATAATACAAAATA
1 C-AAA-ACAAATAAAAA-A-CAAAAATAATACAAAATA
*
14487828 CAAAACAAATACAAAACAAAAA-AATACAAAA
1 CAAAACAAATAAAAAACAAAAATAATACAAAA
14487859 AAAAAAGAAC
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
32 1 0.02
33 12 0.21
34 7 0.12
35 13 0.23
36 8 0.14
37 16 0.28
ACGTcount: A:0.73, C:0.12, G:0.01, T:0.14
Consensus pattern (34 bp):
CAAAACAAATAAAAAACAAAAATAATACAAAATA
Found at i:14487827 original size:30 final size:28
Alignment explanation
Indices: 14487787--14487862 Score: 93
Period size: 30 Copynumber: 2.7 Consensus size: 28
14487777 AATATTACAA
* *
14487787 AATACGAAATACAAAAAAAATACCAAAAAT
1 AATACAAAATACAAAAAAAATA-C-AAAAC
*
14487817 AATACAAAATACAAAACAAATACAAAAC
1 AATACAAAATACAAAAAAAATACAAAAC
14487845 AA-A-AAAATACAAAAAAAA
1 AATACAAAATACAAAAAAAA
14487863 AAGAACAGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.33
27 1 0.02
28 6 0.14
29 1 0.02
30 20 0.48
ACGTcount: A:0.75, C:0.13, G:0.01, T:0.11
Consensus pattern (28 bp):
AATACAAAATACAAAAAAAATACAAAAC
Found at i:14487863 original size:12 final size:12
Alignment explanation
Indices: 14487793--14487863 Score: 53
Period size: 12 Copynumber: 6.2 Consensus size: 12
14487783 ACAAAATACG
14487793 AAATAC-AAAAA
1 AAATACAAAAAA
*
14487804 AAATACCAAAAA
1 AAATACAAAAAA
* *
14487816 TAATACAAAATAC
1 AAATACAAAA-AA
* *
14487829 AAA-ACAAATAC
1 AAATACAAAAAA
14487840 AAA-AC--AAAA
1 AAATACAAAAAA
14487849 AAATACAAAAAA
1 AAATACAAAAAA
14487861 AAA
1 AAA
14487864 AGAACAGAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
9 5 0.10
10 2 0.04
11 13 0.27
12 25 0.52
13 3 0.06
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (12 bp):
AAATACAAAAAA
Found at i:14487874 original size:26 final size:26
Alignment explanation
Indices: 14487793--14487864 Score: 72
Period size: 26 Copynumber: 2.6 Consensus size: 26
14487783 ACAAAATACG
* *
14487793 AAATACAAAAAAAATACCAAAAATAATACA
1 AAATACAAAAAAAA-AAC-AAAACAA-A-A
* *
14487823 AAATACAAAACAAATACAAAACAAAA
1 AAATACAAAAAAAAAACAAAACAAAA
14487849 AAATACAAAAAAAAAA
1 AAATACAAAAAAAAAA
14487865 GAACAGAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 15 0.42
27 1 0.03
28 6 0.17
29 1 0.03
30 13 0.36
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (26 bp):
AAATACAAAAAAAAAACAAAACAAAA
Found at i:14488747 original size:22 final size:22
Alignment explanation
Indices: 14488707--14488761 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
14488697 GATTTCTCAG
* *
14488707 CGGCTCTGAACTACCCCTTGGAT
1 CGGC-CTGAACTACCCCTTAGAC
* *
14488730 CGGCCTGAACTGCTCCTTAGAC
1 CGGCCTGAACTACCCCTTAGAC
*
14488752 CGACCTGAAC
1 CGGCCTGAAC
14488762 CGCGCCTCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.20, C:0.36, G:0.22, T:0.22
Consensus pattern (22 bp):
CGGCCTGAACTACCCCTTAGAC
Found at i:14489289 original size:16 final size:16
Alignment explanation
Indices: 14489268--14489332 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
14489258 CACGTTTTTT
*
14489268 AAAATCCCTAAAATTC
1 AAAATCCCTAAAATCC
** *
14489284 AAAATCTTTTAAATCC
1 AAAATCCCTAAAATCC
14489300 -AAA--CCTCAAAATCC
1 AAAATCCCT-AAAATCC
14489314 AAAATCCCTAAAATCC
1 AAAATCCCTAAAATCC
14489330 AAA
1 AAA
14489333 CCTTTATATC
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
13 1 0.03
14 6 0.16
15 6 0.16
16 22 0.58
17 3 0.08
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATCCCTAAAATCC
Found at i:14489387 original size:21 final size:20
Alignment explanation
Indices: 14489362--14489401 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14489352 AACTTGAAAC
*
14489362 CCTAACCCTAAAATCCAAAAT
1 CCTAAACCTAAAAT-CAAAAT
*
14489383 CCTAAACCTATAATCAAAA
1 CCTAAACCTAAAATCAAAA
14489402 CCTTTTCGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (20 bp):
CCTAAACCTAAAATCAAAAT
Found at i:14490618 original size:4 final size:4
Alignment explanation
Indices: 14490609--14490733 Score: 60
Period size: 4 Copynumber: 29.8 Consensus size: 4
14490599 TTTTATGTAT
* * * *
14490609 TTTA TTTA TTTA -TTA TTACTA TGTA TTAA TATC TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
14490658 TTTA -TTA TTAATA TTTA TATGTA TTTTA TTTA TATA GTTA TATA TTTA
1 TTTA TTTA TT--TA TTTA T-T-TA -TTTA TTTA TTTA TTTA TTTA TTTA
*
14490706 -TTA TTATA TTATAA TTTA TGTA -TTA TTT
1 TTTA TT-TA TT-T-A TTTA TTTA TTTA TTT
14490734 TTTTCTTGTA
Statistics
Matches: 92, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
3 11 0.12
4 57 0.62
5 10 0.11
6 13 0.14
7 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (4 bp):
TTTA
Found at i:14490701 original size:25 final size:24
Alignment explanation
Indices: 14490673--14490734 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
14490663 TATTAATATT
14490673 TATATGTATTTTAT-TTATATAGTTA
1 TATAT-TATTTTATATTATA-AGTTA
*
14490698 TATATTTATTATTATATTATAATTTA
1 TATA-TTATT-TTATATTATAAGTTA
*
14490724 TGTATTATTTT
1 TATATTATTTT
14490735 TTTCTTGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
24 2 0.06
25 13 0.41
26 12 0.38
27 5 0.16
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (24 bp):
TATATTATTTTATATTATAAGTTA
Found at i:14490748 original size:16 final size:16
Alignment explanation
Indices: 14490724--14490754 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14490714 TTATAATTTA
*
14490724 TGTATTATTTTTTTCT
1 TGTAATATTTTTTTCT
14490740 TGTAATATTTTTTTC
1 TGTAATATTTTTTTC
14490755 GGATTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTAATATTTTTTTCT
Found at i:14490795 original size:24 final size:22
Alignment explanation
Indices: 14490768--14490841 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 22
14490758 TTTTTAATTA
14490768 TCTGTTAATATATTTTTTTCTTTT
1 TCTGTT-AT-TATTTTTTTCTTTT
* *
14490792 TCTGTTTATT-TGATTTTTTGTTTA
1 TCTG-TTATTAT--TTTTTTCTTTT
14490816 TCTGATTATT-TTTTTTTCTTTT
1 TCTG-TTATTATTTTTTTCTTTT
14490838 TCTG
1 TCTG
14490842 GGGTTGCGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
22 14 0.33
23 1 0.02
24 25 0.60
25 2 0.05
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.72
Consensus pattern (22 bp):
TCTGTTATTATTTTTTTCTTTT
Found at i:14490813 original size:16 final size:16
Alignment explanation
Indices: 14490788--14490827 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14490778 TATTTTTTTC
*
14490788 TTTTTCTGTTTATTTGA
1 TTTTT-TGTTTATCTGA
14490805 TTTTTTGTTTATCTGA
1 TTTTTTGTTTATCTGA
14490821 TTATTTT
1 TT-TTTT
14490828 TTTTTCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.12, C:0.05, G:0.10, T:0.72
Consensus pattern (16 bp):
TTTTTTGTTTATCTGA
Found at i:14491656 original size:12 final size:13
Alignment explanation
Indices: 14491634--14491669 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
14491624 CAGGTTTTTT
*
14491634 TTTTGTTTATTTA
1 TTTTATTTATTTA
14491647 -TTTATTTATTTA
1 TTTTATTTATTTA
14491659 TTTTATTTATT
1 TTTTATTTATT
14491670 AGATTAGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:14491685 original size:4 final size:4
Alignment explanation
Indices: 14491639--14491669 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
14491629 TTTTTTTTTG
14491639 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TT
14491670 AGATTAGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:14491718 original size:22 final size:21
Alignment explanation
Indices: 14491693--14491749 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
14491683 TTAATATTCT
* *
14491693 TTTTATCTTTATTTTATTTTTA
1 TTTTAT-TTTATTTCACTTTTA
*
14491715 TTTTTTATTTATGTTCACTTTTA
1 TTTTAT-TTTAT-TTCACTTTTA
*
14491738 TTTTGTTTTATT
1 TTTTATTTTATT
14491750 ATTCTATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 15 0.52
23 13 0.45
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.75
Consensus pattern (21 bp):
TTTTATTTTATTTCACTTTTA
Found at i:14492011 original size:60 final size:60
Alignment explanation
Indices: 14491774--14492293 Score: 594
Period size: 60 Copynumber: 8.7 Consensus size: 60
14491764 AAATAAAAAT
* * * * *
14491774 AAAAAAAATGTTTTTGGGAAAAAGCTGAAAGTATCAATTTTCCTTGAAACT-AAATTTTCA
1 AAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTT-A
*** * * * * *
14491834 AAAAAGGGT-TTTTGAGG-AAAAGTTGAAAGTATTAATTTTCCTTGAAAATCAAAGTTTCCA
1 AAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-TA
* *
14491894 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTA
1 AAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTTA
* *
14491955 AAAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
1 AAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTA
* *
14492015 AAAAAAAAAATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTTCA
1 AAAAAAAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTT-A
* *
14492078 AAAAAAAA-A-TTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTTT-
1 AAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTA
* * * * * * *
14492134 CAAAAAAGTTTTTTTGGGGAAAAA-TTGAAAGTATCGATTTTCCTTAAAAACAAAATTTCA
1 AAAAAAAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTA
* *
14492194 AAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCA
1 AAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTA
*
14492253 AAAAAATCAAT-TTTTGAGG-AAAAGTTGAAAGTATCAATTTT
1 AAAAAA--AATATTTTTAGGAAAAAGTTGAAAGTATCAATTTT
14492294 TCATGCACAA
Statistics
Matches: 400, Mismatches: 44, Indels: 33
0.84 0.09 0.07
Matches are distributed among these distances:
56 6 0.01
58 64 0.16
59 62 0.16
60 115 0.29
61 98 0.25
62 46 0.12
63 9 0.02
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (60 bp):
AAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTA
Found at i:14492295 original size:60 final size:58
Alignment explanation
Indices: 14491774--14492293 Score: 584
Period size: 58 Copynumber: 8.7 Consensus size: 58
14491764 AAATAAAAAT
* * * *
14491774 AAAAAAAATGTTTTTG-GGAAAAAGCTGAAAGTATCAATTTTCCTTGAAACTAAATTTTC
1 AAAAAAAA-ATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*** * * *
14491833 AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTC
* *
14491893 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTT-
1 AAAAAAAAAT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
*
14491954 AAAAAAATATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAA-A-ATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
14492014 AAAAAAAAAAATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAATTTTC
1 --AAAAAAAAATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT-AAAA-ATAAATTTTC
* *
14492077 AAAAAAAAAATTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAAAATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*** * * * * *
14492135 AAAAAAGTTTTTTTGGGGAAAAATTGAAAGTATCGATTTTCCTTAAAAACAAAATTTC
1 AAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
14492193 AAAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 -AAAAAAAA-ATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
14492252 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAA--AATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
14492294 TCATGCACAA
Statistics
Matches: 402, Mismatches: 36, Indels: 46
0.83 0.07 0.10
Matches are distributed among these distances:
58 99 0.25
59 62 0.15
60 86 0.21
61 90 0.22
62 52 0.13
63 13 0.03
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (58 bp):
AAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:14504272 original size:109 final size:109
Alignment explanation
Indices: 14504081--14504476 Score: 522
Period size: 109 Copynumber: 3.6 Consensus size: 109
14504071 TTATGGTTAT
** ** * * *
14504081 TTTTATTTCCCTGACTTACGGTTCAGTCCCGGTCATCGTTAATATTTGATTCGTGATTTAATCCC
1 TTTTATTTCTTTGACTTACGGTTCAGTCCCAATCATCGTTAATCTTTGACTCGTGGTTTAATCCC
* **
14504146 GATCATTCTTATAGCTTTTCAACTTACGGTTTAATCCTAGTTTC
66 GATCATTCTTATAGCTTTTCGACTTACGGTTTAATCCTAGTCGC
* ** * * *
14504190 TTTTATTTCTTTGATTTACGGTTCAGTCCCAATTTTCTTTAATCTTTGACTCGTAGTTTAATCCT
1 TTTTATTTCTTTGACTTACGGTTCAGTCCCAATCATCGTTAATCTTTGACTCGTGGTTTAATCCC
*
14504255 GATCATTCTTATAGCTTTTCGACTTACGGTTTAATCCTAATCGC
66 GATCATTCTTATAGCTTTTCGACTTACGGTTTAATCCTAGTCGC
* ** * * *
14504299 TTTTATTTTTTTGACTTGTGGTTCAGTCCCGATCATCGTTAATCTTTGATTCGTGGTTTAATCCT
1 TTTTATTTCTTTGACTTACGGTTCAGTCCCAATCATCGTTAATCTTTGACTCGTGGTTTAATCCC
*
14504364 AATCATTCTTATAGCTTTTCGACTTACGGTTTAATCCTAGTCGC
66 GATCATTCTTATAGCTTTTCGACTTACGGTTTAATCCTAGTCGC
* * * * * *
14504408 TTTTATTTCTTTGACTTGCAGTTCAATCCCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCC
1 TTTTATTTCTTTGACTTACGGTTCAGTCCCAATCATCGTTAATCTTTGACTCGTGGTTTAATCCC
14504473 GATC
66 GATC
14504477 TTTTTATTCT
Statistics
Matches: 247, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
109 247 1.00
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (109 bp):
TTTTATTTCTTTGACTTACGGTTCAGTCCCAATCATCGTTAATCTTTGACTCGTGGTTTAATCCC
GATCATTCTTATAGCTTTTCGACTTACGGTTTAATCCTAGTCGC
Done.