Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 59 of 113
Found at i:14504287 original size:38 final size:38
Alignment explanation
Indices: 14504137--14504402 Score: 118
Period size: 36 Copynumber: 7.3 Consensus size: 38
14504127 TGATTCGTGA
** *
14504137 TTTAATCCCGATCATTCTTATAGCTTTTCAACTTACGG
1 TTTAATCCTAATCATTCTTATAGCTTTTCGACTTACGG
* * * * *
14504175 TTTAATCCTAGT--TTCTTTTA-TTTCTTTGATTTACGG
1 TTTAATCCTAATCATTCTTATAGCTT-TTCGACTTACGG
* * * * *
14504211 TTCAGTCCCAAT-TTTCTT-TA-ATCTTT-GAC-T-CGTAG
1 TTTAATCCTAATCATTCTTATAGCT-TTTCGACTTACG--G
*
14504246 TTTAATCCTGATCATTCTTATAGCTTTTCGACTTACGG
1 TTTAATCCTAATCATTCTTATAGCTTTTCGACTTACGG
* * * **
14504284 TTTAATCCTAATCGCTT-TTAT--TTTTTTGACTTGTGG
1 TTTAATCCTAATC-ATTCTTATAGCTTTTCGACTTACGG
* * ** *
14504320 TTCAGTCCCGATCA-TCGTTA-ATC-TTT-GA-TT-CGTGG
1 TTTAATCCTAATCATTC-TTATAGCTTTTCGACTTAC--GG
14504355 TTTAATCCTAATCATTCTTATAGCTTTTCGACTTACGG
1 TTTAATCCTAATCATTCTTATAGCTTTTCGACTTACGG
14504393 TTTAATCCTA
1 TTTAATCCTA
14504403 GTCGCTTTTA
Statistics
Matches: 166, Mismatches: 38, Indels: 48
0.66 0.15 0.19
Matches are distributed among these distances:
33 2 0.01
34 4 0.02
35 30 0.18
36 64 0.39
37 14 0.08
38 44 0.27
39 5 0.03
40 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.47
Consensus pattern (38 bp):
TTTAATCCTAATCATTCTTATAGCTTTTCGACTTACGG
Found at i:14504703 original size:35 final size:34
Alignment explanation
Indices: 14504445--14504728 Score: 175
Period size: 34 Copynumber: 8.2 Consensus size: 34
14504435 CCCAGTTATC
* *
14504445 TTTAATCTTTGACTCGTGGTTTAATCCCGATCTT
1 TTTAATTTTTGATTCGTGGTTTAATCCCGATCTT
* * * **
14504479 TTT-ATTCTTCGATTCGCGGTTCAATCTTGATCTT
1 TTTAATT-TTTGATTCGTGGTTTAATCCCGATCTT
** * * *
14504513 TTTAA-TTTAAAATCGTAGTTTAATCTCGAT-TGT
1 TTTAATTTTTGATTCGTGGTTTAATCCCGATCT-T
* *
14504546 TGTT-ATTTTCTGACTCGTGGTTTAATCTCGATCTT
1 T-TTAATTTT-TGATTCGTGGTTTAATCCCGATCTT
** * *
14504581 TTT-ATTCTTTGATTCACGGTTCAATCCCGATCTC
1 TTTAATT-TTTGATTCGTGGTTTAATCCCGATCTT
** * * * *
14504615 TTTAA-TTTAAAATCGTAGTTTAATCTCGATTGTT
1 TTTAATTTTTGATTCGTGGTTTAATCCCGA-TCTT
* *
14504649 GTTGTTATCTTCTGATTCGTGGTTTAATCCCGATCTT
1 -TT-TAAT-TTTTGATTCGTGGTTTAATCCCGATCTT
* * *
14504686 TTTAACTTTTTGATTCGTGGTTCAACCCCGATCTC
1 TTTAA-TTTTTGATTCGTGGTTTAATCCCGATCTT
14504721 TTTAATTT
1 TTTAATTT
14504729 AAAATCACAG
Statistics
Matches: 188, Mismatches: 47, Indels: 30
0.71 0.18 0.11
Matches are distributed among these distances:
32 1 0.01
33 37 0.20
34 66 0.35
35 57 0.30
36 6 0.03
37 3 0.02
38 18 0.10
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (34 bp):
TTTAATTTTTGATTCGTGGTTTAATCCCGATCTT
Found at i:14505029 original size:105 final size:105
Alignment explanation
Indices: 14504449--14505014 Score: 660
Period size: 106 Copynumber: 5.4 Consensus size: 105
14504439 GTTATCTTTA
* * ** *
14504449 ATCTT-TGACTCGTGGTTTAATCCCGATCTTTTTATTCTTCGATTCGCGGTTCAATCTTGATCTT
1 ATCTTCTGACTCGTGGTTTAATCTCGATCTTTTTATTCTTTGATTCGCGGTTCAATCCCGATCTC
14504513 TTTAATTTAAAATCGTAGTTTAATCTCGA---TTGTTGTT
66 TTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTGTT
* *
14504550 ATTTTCTGACTCGTGGTTTAATCTCGATCTTTTTATTCTTTGATTCACGGTTCAATCCCGATCTC
1 ATCTTCTGACTCGTGGTTTAATCTCGATCTTTTTATTCTTTGATTCGCGGTTCAATCCCGATCTC
14504615 TTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTGTT
66 TTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTGTT
* * * *
14504655 ATCTTCTGATTCGTGGTTTAATCCCGATCTTTTTAACTT-TTTGATTCGTGGTTCAACCCCGATC
1 ATCTTCTGACTCGTGGTTTAATCTCGATCTTTTT-A-TTCTTTGATTCGCGGTTCAATCCCGATC
** *
14504719 TCTTTAATTTAAAATCACAGTTTAACCTCGATTGTTGTTGTT
64 TCTTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTGTT
* * * * * * * *
14504761 ATCTTTTGACTCGTAGTTTAATGTCGATCTTTTTAATTCTTCGATTCACGGTTTAACCCCAATCT
1 ATCTTCTGACTCGTGGTTTAATCTCGATCTTTTT-ATTCTTTGATTCGCGGTTCAATCCCGATCT
** **
14504826 CTTTAATTTAAAATCACAGTTTAATCTTAATTGTTGTTGTT
65 CTTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTGTT
* * * *** *
14504867 ATCTTTTGACTTGTGGTTTAATC-CTGATCTTTTTATTCTCTGATTCGTTATTCAATCCTGATCT
1 ATCTTCTGACTCGTGGTTTAATCTC-GATCTTTTTATTCTTTGATTCGCGGTTCAATCCCGATCT
* *
14504931 CTTTAGTTTAAAA-CTGTAGTTTAATCTCGATTGTCGTTGTT
65 CTTTAATTTAAAATC-GTAGTTTAATCTCGATTGTTGTTGTT
* ** * * * *
14504972 AACCCCTGACTCGTGGTTTATTCTCGGTCTTCTTATTTTTTGA
1 ATCTTCTGACTCGTGGTTTAATCTCGATCTTTTTATTCTTTGA
14505015 CTTGTGATTC
Statistics
Matches: 397, Mismatches: 58, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
101 4 0.01
102 82 0.21
104 1 0.00
105 126 0.32
106 182 0.46
107 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (105 bp):
ATCTTCTGACTCGTGGTTTAATCTCGATCTTTTTATTCTTTGATTCGCGGTTCAATCCCGATCTC
TTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTGTT
Found at i:14505160 original size:174 final size:175
Alignment explanation
Indices: 14504916--14505276 Score: 510
Period size: 174 Copynumber: 2.1 Consensus size: 175
14504906 CTGATTCGTT
*
14504916 ATTCAATCCTGATCTCTTTAGTTTAAAACTGTAGTTTAATCTCGATTGTCGTTGTTAACCCCTGA
1 ATTCAATCCTGATCTCTTTAATTTAAAACTGTAGTTTAATCTCGATTGTCGTTGTTAACCCCTGA
* * *
14504981 CTCGTGGTTTATTCTCGGTCTTCTTA-TTTTTTGACTTGTGATTCAATCCAAGTTAACGTCATTT
66 CTCGTGGTTTATTCTCGATCTTCTTATTTTTTTAACTTGCGATTCAATCCAAGTTAACGTCATTT
*
14505045 TTTGACTCACGATTTCATCCCAGTCTCTTTATTCTCTTATTTACG
131 TTTGACTCACGATTTAATCCCAGTCTCTTTATTCTCTTATTTACG
* * * * * *
14505090 ATTCAATCTTGATCTTTTTAATTTAAAA-TCGTAGTTTAATTTTGATTGTTGTTGTTAACCTCTG
1 ATTCAATCCTGATCTCTTTAATTTAAAACT-GTAGTTTAATCTCGATTGTCGTTGTTAACCCCTG
14505154 ACTCGTGGTTTATTCTCGATCTTCTTATTTTTTTTAACTTGCGATTCAATCCAAGTTAACGTCAT
65 ACTCGTGGTTTATTCTCGATCTTCTTA-TTTTTTTAACTTGCGATTCAATCCAAGTTAACGTCAT
* * ** * * *
14505219 TTTTTTATTCACGATTTAATCCCTTTCTTTTTATTCTCTGATTCACG
129 TTTTTGACTCACGATTTAATCCCAGTCTCTTTATTCTCTTATTTACG
* *
14505266 GTTTAATCCTG
1 ATTCAATCCTG
14505277 GTCTTTAGTA
Statistics
Matches: 163, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
173 1 0.01
174 81 0.50
176 81 0.50
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (175 bp):
ATTCAATCCTGATCTCTTTAATTTAAAACTGTAGTTTAATCTCGATTGTCGTTGTTAACCCCTGA
CTCGTGGTTTATTCTCGATCTTCTTATTTTTTTAACTTGCGATTCAATCCAAGTTAACGTCATTT
TTTGACTCACGATTTAATCCCAGTCTCTTTATTCTCTTATTTACG
Found at i:14505647 original size:19 final size:17
Alignment explanation
Indices: 14505623--14505688 Score: 71
Period size: 19 Copynumber: 3.7 Consensus size: 17
14505613 ATAACATTAC
14505623 AAAATACAAAATATAGAAA
1 AAAATACAAAA-ATA-AAA
*
14505642 AAAATACCAAAAATAATAT
1 AAAATA-CAAAAATAA-AA
*
14505661 AAAATAC-AAAACAAAA
1 AAAATACAAAAATAAAA
14505677 AAAATACAAAAA
1 AAAATACAAAAA
14505689 AATAGAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.20
17 10 0.24
18 2 0.05
19 16 0.39
20 5 0.12
ACGTcount: A:0.76, C:0.09, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAATACAAAAATAAAA
Found at i:14505688 original size:45 final size:44
Alignment explanation
Indices: 14505606--14505692 Score: 111
Period size: 45 Copynumber: 2.0 Consensus size: 44
14505596 CTAAAAAAAT
* * * * * *
14505606 AAAAATAATAACATTACAAAATACAAAATATAGAAAAAAATACC
1 AAAAATAATAAAAATACAAAACAAAAAAAATACAAAAAAATACC
14505650 AAAAATAATATAAAATACAAAACAAAAAAAATACAAAAAAATA
1 AAAAATAATA-AAAATACAAAACAAAAAAAATACAAAAAAATA
14505693 GAAAACAGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 10 0.28
45 26 0.72
ACGTcount: A:0.74, C:0.09, G:0.01, T:0.16
Consensus pattern (44 bp):
AAAAATAATAAAAATACAAAACAAAAAAAATACAAAAAAATACC
Found at i:14505689 original size:10 final size:10
Alignment explanation
Indices: 14505623--14505697 Score: 53
Period size: 10 Copynumber: 7.1 Consensus size: 10
14505613 ATAACATTAC
14505623 AAAATAC-AA
1 AAAATACAAA
* *
14505632 AATATAGAAA
1 AAAATACAAA
14505642 AAAATACCAAA
1 AAAATA-CAAA
*
14505653 AATAATATAAA
1 AA-AATACAAA
*
14505664 ATACAAAACAAAA
1 A-A-AATAC-AAA
14505677 AAAATACAAA
1 AAAATACAAA
*
14505687 AAAATAGAAA
1 AAAATACAAA
14505697 A
1 A
14505698 CAGAAAAATC
Statistics
Matches: 51, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
9 5 0.10
10 20 0.39
11 13 0.25
12 9 0.18
13 4 0.08
ACGTcount: A:0.76, C:0.08, G:0.03, T:0.13
Consensus pattern (10 bp):
AAAATACAAA
Found at i:14507136 original size:30 final size:30
Alignment explanation
Indices: 14507101--14507159 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
14507091 TAAAACCCGT
*
14507101 AAAATCCAAAATCCTTTAAATCCAAACCCC
1 AAAATCCAAAATCCTTAAAATCCAAACCCC
**
14507131 AAAATCCAAGGTCCTTAAAATCCAAACCC
1 AAAATCCAAAATCCTTAAAATCCAAACCC
14507160 TTATATCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.46, C:0.32, G:0.03, T:0.19
Consensus pattern (30 bp):
AAAATCCAAAATCCTTAAAATCCAAACCCC
Found at i:14513140 original size:34 final size:34
Alignment explanation
Indices: 14513054--14513141 Score: 108
Period size: 33 Copynumber: 2.6 Consensus size: 34
14513044 AGGCAATTAA
*
14513054 ACTTTAAA-AAGCTCCTCTAACTAAAGGCTATGAT
1 ACTTTAAAGAA-CTCTTCTAACTAAAGGCTATGAT
* * *
14513088 ACTTGAAAG-ACTCTTCTAACTATAGGTTATGAT
1 ACTTTAAAGAACTCTTCTAACTAAAGGCTATGAT
*
14513121 ATTTTAAAGAACTCTTCTAAC
1 ACTTTAAAGAACTCTTCTAAC
14513142 AAGAAGCTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
33 27 0.59
34 19 0.41
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.34
Consensus pattern (34 bp):
ACTTTAAAGAACTCTTCTAACTAAAGGCTATGAT
Found at i:14513161 original size:34 final size:34
Alignment explanation
Indices: 14513123--14513192 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
14513113 GTTATGATAT
*
14513123 TTTAAAGAACT-CTTCTAACAAGAAGCTATAGCAC
1 TTTAAAAAACTCCTT-TAACAAGAAGCTATAGCAC
* * *
14513157 TTTAAAAAACTCCTTTAACTAGATGCTATGGCAC
1 TTTAAAAAACTCCTTTAACAAGAAGCTATAGCAC
14513191 TT
1 TT
14513193 ATAATTAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 28 0.90
35 3 0.10
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (34 bp):
TTTAAAAAACTCCTTTAACAAGAAGCTATAGCAC
Found at i:14513376 original size:34 final size:35
Alignment explanation
Indices: 14513292--14513442 Score: 116
Period size: 34 Copynumber: 4.4 Consensus size: 35
14513282 CTCTAATTTG
* *
14513292 AAAAACTCATCTAACTAGAGGCTATGAGACTTTTT
1 AAAAACTCATCTAACCAGAGGCTATGAGACTTTTA
* * *
14513327 AAAAATTCCTCTAACCAGAGGCTATGATAC-TTTA
1 AAAAACTCATCTAACCAGAGGCTATGAGACTTTTA
* * **
14513361 AAAAACTCATTTAACCAAAAACTATG-G-CATTTT-
1 AAAAACTCATCTAACCAGAGGCTATGAGAC-TTTTA
** * *
14513394 AAAAACTTC-TCTAATAAGAGGCTATAACAC-TTTA
1 AAAAAC-TCATCTAACCAGAGGCTATGAGACTTTTA
*
14513428 AAAAACTCCTCTAAC
1 AAAAACTCATCTAAC
14513443 TAAAAGTAAT
Statistics
Matches: 88, Mismatches: 21, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
32 1 0.01
33 21 0.24
34 39 0.44
35 27 0.31
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (35 bp):
AAAAACTCATCTAACCAGAGGCTATGAGACTTTTA
Found at i:14513474 original size:67 final size:67
Alignment explanation
Indices: 14513257--14513447 Score: 156
Period size: 67 Copynumber: 2.9 Consensus size: 67
14513247 CATAGTTAAT
* * * * * * * **
14513257 TTTGAAAAAGTCCTCTAATTAGAGGCTCT-A-A-TTTGAAAAACTCATCTAACTAGAGGCTATGA
1 TTTGAAAAACTTCTCTAATAAGAGGCTATAACACTTTAAAAAACTCATCTAACCAAAAACTATG-
*
14513319 GACT
65 G-CA
* ** * * *
14513323 TTTTAAAAA-TTCCTCTAACCAGAGGCTATGATACTTTAAAAAACTCATTTAACCAAAAACTATG
1 TTTGAAAAACTT-CTCTAATAAGAGGCTATAACACTTTAAAAAACTCATCTAACCAAAAACTATG
14513387 GCA
65 GCA
* * *
14513390 TTTTAAAAACTTCTCTAATAAGAGGCTATAACACTTTAAAAAACTCCTCTAACTAAAA
1 TTTGAAAAACTTCTCTAATAAGAGGCTATAACACTTTAAAAAACTCATCTAACCAAAA
14513448 GTAATGGGAT
Statistics
Matches: 101, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
65 1 0.01
66 22 0.22
67 50 0.50
68 4 0.04
69 24 0.24
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.30
Consensus pattern (67 bp):
TTTGAAAAACTTCTCTAATAAGAGGCTATAACACTTTAAAAAACTCATCTAACCAAAAACTATGG
CA
Found at i:14513481 original size:67 final size:66
Alignment explanation
Indices: 14513327--14513481 Score: 168
Period size: 67 Copynumber: 2.3 Consensus size: 66
14513317 GAGACTTTTT
* * *
14513327 AAAAATTCCTCTAACCAGAGGCTATGATACTTTAAAAAACTCATTTAACCAAAAACTATGGCATT
1 AAAAATT-CTCTAACCAGAGGCTATAACACTTTAAAAAACTCATCTAACCAAAAACTATGGCATT
*
14513392 TT
65 TG
** * * * *
14513394 AAAAACTTCTCTAATAAGAGGCTATAACACTTTAAAAAACTCCTCTAA-CTAAAAGTAATGGGAT
1 AAAAA-TTCTCTAACCAGAGGCTATAACACTTTAAAAAACTCATCTAACCAAAAACT-ATGGCAT
14513458 TTG
64 TTG
*
14513461 AAAGATTCTTCTAACCAGAGG
1 AAAAATTC-TCTAACCAGAGG
14513482 TAATGAGATT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
66 9 0.12
67 61 0.85
68 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (66 bp):
AAAAATTCTCTAACCAGAGGCTATAACACTTTAAAAAACTCATCTAACCAAAAACTATGGCATTT
G
Found at i:14513485 original size:33 final size:33
Alignment explanation
Indices: 14513450--14513602 Score: 119
Period size: 33 Copynumber: 4.6 Consensus size: 33
14513440 AACTAAAAGT
* *
14513450 AATGGGATTTGAAAGATTCTTCTAACCAGAGGT
1 AATGGGATTTGAAAGATTCTTCTAACCAAAGGC
* * *
14513483 AATGAGATTTGGAATATT-TCTCTAACCAAAGGC
1 AATGGGATTTGAAAGATTCT-TCTAACCAAAGGC
* * * *
14513516 AATAGGACTTGAAAGTTTCCTCTAACCAAAGGC
1 AATGGGATTTGAAAGATTCTTCTAACCAAAGGC
* * * * * * * *
14513549 GATGGCATGTGAAATATTCCTCTAACTAGATGC
1 AATGGGATTTGAAAGATTCTTCTAACCAAAGGC
* *
14513582 GATGGGATTTAAAAGATTCTT
1 AATGGGATTTGAAAGATTCTT
14513603 AAAATAGAAA
Statistics
Matches: 91, Mismatches: 27, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
32 1 0.01
33 90 0.99
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (33 bp):
AATGGGATTTGAAAGATTCTTCTAACCAAAGGC
Found at i:14514275 original size:14 final size:14
Alignment explanation
Indices: 14514255--14514286 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14514245 ACCTTTATTT
14514255 ATTTTTTT-AAAAC
1 ATTTTTTTGAAAAC
14514268 ATTTTTTTGAAAAC
1 ATTTTTTTGAAAAC
14514282 ATTTT
1 ATTTT
14514287 ATTCATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (14 bp):
ATTTTTTTGAAAAC
Found at i:14516798 original size:22 final size:21
Alignment explanation
Indices: 14516773--14516824 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
14516763 TAGAGGTTCA
*
14516773 GTTTGGTTTAAGTTTGGGGTTT
1 GTTTAGTTT-AGTTTGGGGTTT
* *
14516795 GTTTAGTTTGGTTTGGGGTATA
1 GTTTAGTTTAGTTTGGGGT-TT
14516817 GTTTAGTT
1 GTTTAGTT
14516825 CGATTTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.12, C:0.00, G:0.35, T:0.54
Consensus pattern (21 bp):
GTTTAGTTTAGTTTGGGGTTT
Found at i:14516804 original size:16 final size:18
Alignment explanation
Indices: 14516773--14516805 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
14516763 TAGAGGTTCA
14516773 GTTTGGTTTAAGTTTGGG
1 GTTTGGTTTAAGTTTGGG
14516791 GTTT-GTTT-AGTTTGG
1 GTTTGGTTTAAGTTTGG
14516806 TTTGGGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.09, C:0.00, G:0.36, T:0.55
Consensus pattern (18 bp):
GTTTGGTTTAAGTTTGGG
Found at i:14516810 original size:21 final size:22
Alignment explanation
Indices: 14516784--14516824 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14516774 TTTGGTTTAA
*
14516784 GTTTGGGGT-TTGTTTAGTTTG
1 GTTTGGGGTATAGTTTAGTTTG
14516805 GTTTGGGGTATAGTTTAGTT
1 GTTTGGGGTATAGTTTAGTT
14516825 CGATTTAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.10, C:0.00, G:0.37, T:0.54
Consensus pattern (22 bp):
GTTTGGGGTATAGTTTAGTTTG
Found at i:14517047 original size:19 final size:19
Alignment explanation
Indices: 14517011--14517059 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
14517001 GGGTTTGGAT
* *
14517011 TTTTGTTTTACAGTTTGGGG
1 TTTTG-TTTAAAGCTTGGGG
14517031 TTTTGTTTAAAGCTTGGGG
1 TTTTGTTTAAAGCTTGGGG
14517050 TTTTAGTTTA
1 TTTT-GTTTA
14517060 GGGTTTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.14, C:0.04, G:0.27, T:0.55
Consensus pattern (19 bp):
TTTTGTTTAAAGCTTGGGG
Found at i:14517071 original size:20 final size:19
Alignment explanation
Indices: 14517048--14517099 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
14517038 TAAAGCTTGG
*
14517048 GGTTTTAGTTTAGGGTTTAA
1 GGTTTTAGTTTAGAGTTT-A
*
14517068 GG-TTTAGTTTTAGAGTTTG
1 GGTTTTAG-TTTAGAGTTTA
*
14517087 GGTTTTTGTTTAG
1 GGTTTTAGTTTAG
14517100 TGTAGACATC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (19 bp):
GGTTTTAGTTTAGAGTTTA
Found at i:14517090 original size:19 final size:19
Alignment explanation
Indices: 14517017--14517091 Score: 53
Period size: 19 Copynumber: 3.9 Consensus size: 19
14517007 GGATTTTTGT
* * *
14517017 TTTACAGTTTGGGGTTTTG
1 TTTAGAGTTTAGGGTTTAG
* * *
14517036 TTTAAAGCTTGGGGTTTTAG
1 TTTAGAGTTTAGGG-TTTAG
* *
14517056 TTTAGGGTTTAAGGTTTAG
1 TTTAGAGTTTAGGGTTTAG
14517075 TTTTAGAGTTT-GGGTTT
1 -TTTAGAGTTTAGGGTTT
14517092 TTGTTTAGTG
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 22 0.50
20 22 0.50
ACGTcount: A:0.16, C:0.03, G:0.31, T:0.51
Consensus pattern (19 bp):
TTTAGAGTTTAGGGTTTAG
Found at i:14519232 original size:14 final size:15
Alignment explanation
Indices: 14519199--14519241 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
14519189 ACTTGTATTT
*
14519199 TATTTAGTTATTCATT
1 TATTT-GTTATTCATA
14519215 TATTTGTT-TTCATA
1 TATTTGTTATTCATA
*
14519229 TATTTGTCATTCA
1 TATTTGTTATTCA
14519242 CTTGCATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 12 0.50
15 7 0.29
16 5 0.21
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.60
Consensus pattern (15 bp):
TATTTGTTATTCATA
Found at i:14523275 original size:2 final size:2
Alignment explanation
Indices: 14523268--14523310 Score: 51
Period size: 2 Copynumber: 24.0 Consensus size: 2
14523258 TGCAATCTTG
14523268 TA TA TA TA T- TA TA T- TA TA T- TA TA T- TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14523305 TA TA TA
1 TA TA TA
14523311 GCTAGCTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
1 5 0.14
2 31 0.86
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:14523282 original size:5 final size:5
Alignment explanation
Indices: 14523268--14523307 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
14523258 TGCAATCTTG
14523268 TATA- TATAT TATAT TATAT TATAT TATAT TATAT ATATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT -TATAT
14523308 ATAGCTAGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 25 0.74
6 5 0.15
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:14523310 original size:10 final size:10
Alignment explanation
Indices: 14523268--14523310 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
14523258 TGCAATCTTG
14523268 TATATATAT-
1 TATATATATA
14523277 TATAT-TATA
1 TATATATATA
14523286 T-TATAT-TA
1 TATATATATA
14523294 TAT-TATATA
1 TATATATATA
14523303 TATATATA
1 TATATATA
14523311 GCTAGCTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
8 12 0.41
9 13 0.45
10 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TATATATATA
Found at i:14524891 original size:26 final size:27
Alignment explanation
Indices: 14524843--14524895 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
14524833 TAACAACAAA
14524843 CTGGTAGACAATTTAATTTGATAAAGT
1 CTGGTAGACAATTTAATTTGATAAAGT
14524870 CTGGTAGACAA-TTAATTTGATAAAGT
1 CTGGTAGACAATTTAATTTGATAAAGT
14524896 TTTTAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.36
Consensus pattern (27 bp):
CTGGTAGACAATTTAATTTGATAAAGT
Found at i:14527304 original size:96 final size:96
Alignment explanation
Indices: 14527140--14527343 Score: 363
Period size: 96 Copynumber: 2.1 Consensus size: 96
14527130 ATGGTTGAAT
*
14527140 TAAATAAATATAAATCATAGAAAGAATTATAAACAATTATAAACTGATGTAAACTAAATTAGTTT
1 TAAATAAATATAAATCATAGAAAGAATTATAAACAATTATAAAATGATGTAAACTAAATTAGTTT
*
14527205 GATACTGACGTCAGTGAATCATATATATATA
66 GATACTGACGTAAGTGAATCATATATATATA
*
14527236 TAAATAAATATAAATCATAGAAAGAATTATAAACAATTATAAAATGATGTAAACTAAATTTGTTT
1 TAAATAAATATAAATCATAGAAAGAATTATAAACAATTATAAAATGATGTAAACTAAATTAGTTT
14527301 GATACTGACGTAAGTGAATCATATATATATA
66 GATACTGACGTAAGTGAATCATATATATATA
* *
14527332 TATATATATATA
1 TAAATAAATATA
14527344 TATATTATAT
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 103 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.34
Consensus pattern (96 bp):
TAAATAAATATAAATCATAGAAAGAATTATAAACAATTATAAAATGATGTAAACTAAATTAGTTT
GATACTGACGTAAGTGAATCATATATATATA
Found at i:14527328 original size:2 final size:2
Alignment explanation
Indices: 14527321--14527353 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
14527311 TAAGTGAATC
14527321 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14527354 GTGGTTTCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:14535179 original size:19 final size:20
Alignment explanation
Indices: 14535157--14535194 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
14535147 TAAAAATTTT
14535157 AAAAAACTATAATT-TGAAA
1 AAAAAACTATAATTATGAAA
14535176 AAAAAACTATAATTATGAA
1 AAAAAACTATAATTATGAA
14535195 TAAATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
AAAAAACTATAATTATGAAA
Found at i:14548816 original size:55 final size:55
Alignment explanation
Indices: 14548682--14548850 Score: 162
Period size: 55 Copynumber: 3.1 Consensus size: 55
14548672 AATATAATAA
* * * * * * ** *
14548682 AAAATTAAAACATATAAGTCTACACTGACAATCTCTAATCATTGGTGTAGGTAAG
1 AAAATTAAAAAATATAAATTTATACTGACAATTTCTAACCATCAGTATAGGTAAG
** *
14548737 AAAATTAAAGTATAT-AATTCTATACTAACAATTTCTAACCATCAGTATAGGTAAG
1 AAAATTAAAAAATATAAATT-TATACTGACAATTTCTAACCATCAGTATAGGTAAG
* * * *
14548792 AAAATTAAAAAATATAAATTTATACTGACGGA-TGCTAAGCATCACTATAGGTAAG
1 AAAATTAAAAAATATAAATTTATACTGAC-AATTTCTAACCATCAGTATAGGTAAG
14548847 AAAA
1 AAAA
14548851 ATTACAAGTC
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
54 2 0.02
55 86 0.92
56 5 0.05
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (55 bp):
AAAATTAAAAAATATAAATTTATACTGACAATTTCTAACCATCAGTATAGGTAAG
Found at i:14548959 original size:160 final size:157
Alignment explanation
Indices: 14548723--14549015 Score: 376
Period size: 160 Copynumber: 1.8 Consensus size: 157
14548713 TCTCTAATCA
* ** *
14548723 TTGGTGTAGGTAAGAAAATTAAAGTATATAATTCTATACTAACAATTTCTAACCATCAGTATAGG
1 TTGGTATAGGTAAGAAAATTAAAACATATAATTCTATACTAACAATGTCTAACCATCAGTATAGG
* *
14548788 TAAGAAAATTAAAAAATATAAATTTATACTGACGGATGCTAAGCATCACTATAGGTAAGAAAAAT
66 TAAGAAAATTAAAAAATATAAATCTATACTGACGGAT-ATAAGCATCACTATAGGTAA-AAAAAT
14548853 TACAAGTCTATGGTAAGAAATGTTAACCT
129 TACAAGTCTATGGTAAGAAATGTTAACCT
* * *
14548882 TTGGTATAGGTAAGAAAAATTAAAACATATAAGTT-TATACTGACAGGTGT-TAACTATC-GATA
1 TTGGTATAGGTAAG-AAAATTAAAACATATAA-TTCTATACTAACA-ATGTCTAACCATCAG-TA
* * * * * *
14548944 TAGGTGATAAAATTAAAACATATAAATCTATACTGACGGCTATAAGCATTAGTATAGGTAAAAAA
62 TAGGTAAGAAAATTAAAAAATATAAATCTATACTGACGGATATAAGCATCACTATAGGTAAAAAA
14549009 ATTACAA
127 ATTACAA
14549016 CAAGTCTATA
Statistics
Matches: 115, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
158 11 0.10
159 31 0.27
160 69 0.60
161 4 0.03
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (157 bp):
TTGGTATAGGTAAGAAAATTAAAACATATAATTCTATACTAACAATGTCTAACCATCAGTATAGG
TAAGAAAATTAAAAAATATAAATCTATACTGACGGATATAAGCATCACTATAGGTAAAAAAATTA
CAAGTCTATGGTAAGAAATGTTAACCT
Found at i:14555010 original size:4 final size:4
Alignment explanation
Indices: 14555001--14555066 Score: 52
Period size: 4 Copynumber: 17.5 Consensus size: 4
14554991 CAAAAAACCC
* * *
14555001 AAAT AAAT AAAT AAAT ATAT -AAT ATAT AAAAT AAAT AAAT ATA- AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT
*
14555048 -TAT AAA- AAAT AAA- AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AA
14555067 TTTAAAGGCC
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
3 12 0.25
4 33 0.69
5 3 0.06
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:14555033 original size:24 final size:25
Alignment explanation
Indices: 14555005--14555065 Score: 90
Period size: 24 Copynumber: 2.5 Consensus size: 25
14554995 AAACCCAAAT
* *
14555005 AAATAAATAAATATATAA-TATATA
1 AAATAAATAAATATAAAATTATAAA
14555029 AAATAAATAAATATAAAATTATAAA
1 AAATAAATAAATATAAAATTATAAA
14555054 AAATAAA-AAATA
1 AAATAAATAAATA
14555066 ATTTAAAGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 22 0.65
25 12 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (25 bp):
AAATAAATAAATATAAAATTATAAA
Found at i:14555064 original size:32 final size:32
Alignment explanation
Indices: 14555001--14555066 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
14554991 CAAAAAACCC
* * *
14555001 AAATAAATAAATAAATATATAATATATAAAAT
1 AAATAAATAAATAAATATAAAAAATAAAAAAT
*
14555033 AAATAAATATAA-AATTATAAAAAATAAAAAAT
1 AAATAAATA-AATAAATATAAAAAATAAAAAAT
14555065 AA
1 AA
14555067 TTTAAAGGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 27 0.93
33 2 0.07
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (32 bp):
AAATAAATAAATAAATATAAAAAATAAAAAAT
Found at i:14558003 original size:21 final size:21
Alignment explanation
Indices: 14557974--14558041 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
14557964 GTAATTGTTC
*
14557974 AAAATAAAATACTAAAAAGGA
1 AAAACAAAATACTAAAAAGGA
* *
14557995 AAAAC-AAA-A-T-AAATGCA
1 AAAACAAAATACTAAAAAGGA
*
14558012 AAAGCAAAATACTAAAAAGGA
1 AAAACAAAATACTAAAAAGGA
14558033 AAAACAAAA
1 AAAACAAAA
14558042 AAAATGTGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
17 9 0.25
18 4 0.11
19 2 0.06
20 4 0.11
21 17 0.47
ACGTcount: A:0.72, C:0.09, G:0.09, T:0.10
Consensus pattern (21 bp):
AAAACAAAATACTAAAAAGGA
Found at i:14570384 original size:10 final size:9
Alignment explanation
Indices: 14570372--14570410 Score: 51
Period size: 10 Copynumber: 4.0 Consensus size: 9
14570362 TTATAGAATG
14570372 AATCTTGAT
1 AATCTTGAT
14570381 GAATCTTGAAT
1 -AATCTTG-AT
14570392 AATCTTGAT
1 AATCTTGAT
14570401 AATTCTTGAT
1 AA-TCTTGAT
14570411 CAAATCATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 4 0.15
10 21 0.78
11 2 0.07
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (9 bp):
AATCTTGAT
Found at i:14570397 original size:20 final size:21
Alignment explanation
Indices: 14570367--14570409 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
14570357 TTGGATTATA
14570367 GAATGAATCTTGATGAA-TCTT
1 GAATGAATCTTGAT-AATTCTT
14570388 GAAT-AATCTTGATAATTCTT
1 GAATGAATCTTGATAATTCTT
14570408 GA
1 GA
14570410 TCAAATCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.10
20 15 0.71
21 4 0.19
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (21 bp):
GAATGAATCTTGATAATTCTT
Found at i:14574367 original size:27 final size:26
Alignment explanation
Indices: 14574310--14574368 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
14574300 AGTTTTGAAA
*
14574310 AAAAATGAAAAAAAAATTAGAGAACT
1 AAAAATGAAAAAAAAATTAGAAAACT
* * *
14574336 TAAAATGAAAAGAAAAGTTAGGAAAACA
1 AAAAATGAAAA-AAAAATTA-GAAAACT
14574364 AAAAA
1 AAAAA
14574369 AAAATCCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 10 0.38
27 7 0.27
28 9 0.35
ACGTcount: A:0.69, C:0.03, G:0.14, T:0.14
Consensus pattern (26 bp):
AAAAATGAAAAAAAAATTAGAAAACT
Found at i:14575214 original size:10 final size:10
Alignment explanation
Indices: 14575186--14575326 Score: 69
Period size: 10 Copynumber: 13.9 Consensus size: 10
14575176 TCTTTAAAGA
14575186 AAATAAAAA-
1 AAATAAAAAT
*
14575195 AAAGTGAAAAT
1 AAA-TAAAAAT
14575206 AAATAAAAAT
1 AAATAAAAAT
* *
14575216 TAA-AAAATT
1 AAATAAAAAT
* *
14575225 AAAGAAAAGT
1 AAATAAAAAT
*
14575235 -AA-AACAA-
1 AAATAAAAAT
14575242 AAATAAAAAT
1 AAATAAAAAT
*
14575252 AAGATAAAGAAA
1 AA-ATAAA-AAT
*
14575264 AAATATTAAAT
1 AAATA-AAAAT
*
14575275 AAATTTAATCTAAT
1 AAA--TAA--AAAT
14575289 AAATAAAAAT
1 AAATAAAAAT
*
14575299 AAATAAAGAT
1 AAATAAAAAT
*
14575309 AAA-ACAAAT
1 AAATAAAAAT
14575318 AAATAAAAA
1 AAATAAAAA
14575327 ATTTCAAAAA
Statistics
Matches: 99, Mismatches: 19, Indels: 27
0.68 0.13 0.19
Matches are distributed among these distances:
8 5 0.05
9 23 0.23
10 39 0.39
11 16 0.16
12 8 0.08
13 2 0.02
14 6 0.06
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:14575246 original size:36 final size:36
Alignment explanation
Indices: 14575179--14575251 Score: 94
Period size: 35 Copynumber: 2.0 Consensus size: 36
14575169 TGATTTTTCT
* *
14575179 TTAAAGAAAATAAAAAAAAGTGAAAATAAATAAAAA
1 TTAAAGAAAATAAAAAAAAGTAAAAAAAAATAAAAA
* *
14575215 TTAAA-AAATTAAAGAAAAGTAAAACAAAAATAAAAA
1 TTAAAGAAAATAAAAAAAAGTAAAA-AAAAATAAAAA
14575251 T
1 T
14575252 AAGATAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 16 0.50
36 16 0.50
ACGTcount: A:0.74, C:0.01, G:0.07, T:0.18
Consensus pattern (36 bp):
TTAAAGAAAATAAAAAAAAGTAAAAAAAAATAAAAA
Found at i:14575259 original size:22 final size:21
Alignment explanation
Indices: 14575217--14575268 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
14575207 AATAAAAATT
14575217 AAAAAATTAAAGAAAAGTAAA-
1 AAAAAA-TAAAGAAAAGTAAAG
14575238 ACAAAAATAAA-AATAAGATAAAG
1 A-AAAAATAAAGAA-AAG-TAAAG
14575261 AAAAAATA
1 AAAAAATA
14575269 TTAAATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.07
21 8 0.30
22 16 0.59
23 1 0.04
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (21 bp):
AAAAAATAAAGAAAAGTAAAG
Found at i:14575265 original size:44 final size:43
Alignment explanation
Indices: 14575179--14575267 Score: 101
Period size: 44 Copynumber: 2.0 Consensus size: 43
14575169 TGATTTTTCT
* * *
14575179 TTAAAGAAAATAAAAAAAAGTGAAAATAAATAAAAATTAAAAAA
1 TTAAAGAAAATAAAAAAAAATAAAAATAAAT-AAAATGAAAAAA
14575223 TTAAAGAAAAGTAAAACAAAAATAAAAATAAGAT-AAA-GAAAAAA
1 TTAAAGAAAA-TAAAA-AAAAATAAAAATAA-ATAAAATGAAAAAA
14575267 T
1 T
14575268 ATTAAATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
44 17 0.44
45 8 0.21
46 12 0.31
47 2 0.05
ACGTcount: A:0.74, C:0.01, G:0.08, T:0.17
Consensus pattern (43 bp):
TTAAAGAAAATAAAAAAAAATAAAAATAAATAAAATGAAAAAA
Found at i:14575273 original size:46 final size:44
Alignment explanation
Indices: 14575179--14575325 Score: 129
Period size: 46 Copynumber: 3.2 Consensus size: 44
14575169 TGATTTTTCT
* *
14575179 TTAAAGAAAATAAAA-AAAAGTGAAAATAAATAAA-AATTAAAAAA
1 TTAAAGAAAATAAAACAAAAATAAAAATAAATAAAGAA--AAAAAA
*
14575223 TTAAAGAAAAGTAAAACAAAAATAAAAATAAGATAAAGAAAAAATA
1 TTAAAGAAAA-TAAAACAAAAATAAAAATAA-ATAAAGAAAAAAAA
* * * *
14575269 TTAAATAAATTTAATCTAATAAATAAAAATAAATAAAGATAAAACAAA
1 TTAAAGAAAATAAAAC-AA-AAATAAAAATAAATAAAGA-AAAA-AAA
*
14575317 -TAAATAAAA
1 TTAAAGAAAA
14575326 AATTTCAAAA
Statistics
Matches: 86, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
44 10 0.12
45 9 0.10
46 34 0.40
47 29 0.34
48 4 0.05
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.20
Consensus pattern (44 bp):
TTAAAGAAAATAAAACAAAAATAAAAATAAATAAAGAAAAAAAA
Found at i:14576339 original size:17 final size:17
Alignment explanation
Indices: 14576313--14576356 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
14576303 AAAAAAAATG
* *
14576313 ATAATGATAATAATAAT
1 ATAATAATAATAATAAC
*
14576330 ATAATAATAATGATAAC
1 ATAATAATAATAATAAC
14576347 ATAATAATAA
1 ATAATAATAA
14576357 CAAATATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (17 bp):
ATAATAATAATAATAAC
Found at i:14576373 original size:20 final size:19
Alignment explanation
Indices: 14576328--14576379 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
14576318 GATAATAATA
*
14576328 ATATAATAATAATGATAAC
1 ATATAATAAAAATGATAAC
14576347 ATAATAATAACAAAT-ATAAC
1 AT-ATAATAA-AAATGATAAC
14576367 TATATAAATAAAA
1 -ATAT-AATAAAA
14576380 TACATATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 2 0.07
20 16 0.57
21 10 0.36
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (19 bp):
ATATAATAAAAATGATAAC
Found at i:14576675 original size:1 final size:1
Alignment explanation
Indices: 14576669--14576770 Score: 96
Period size: 1 Copynumber: 102.0 Consensus size: 1
14576659 AACATTGTCA
* * * * * * * * *
14576669 TTTTTTTTTGTTTTTTTTGTGTTTTTTGTTTTGTTTTTTGTTCTTTTTTTTGTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
14576734 TTGTTTTTTTTTTTTGTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14576771 ACCAAAGCTC
Statistics
Matches: 77, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.00, C:0.01, G:0.11, T:0.88
Consensus pattern (1 bp):
T
Found at i:14576742 original size:48 final size:45
Alignment explanation
Indices: 14576669--14576770 Score: 152
Period size: 48 Copynumber: 2.2 Consensus size: 45
14576659 AACATTGTCA
14576669 TTTTTTTTTGTTTTTTTTGTGTTTTTTGTTTTGTTTTTTGTTCTTTT
1 TTTTTTTTTGTTTTTTTTGTGTTTTTTGTTTTG-TTTTTGTT-TTTT
*
14576716 TTTTGTTTTTGTTTTTTTT-TGTTTTTTTTTTTTGTTTTTGTTTTTT
1 TTTT-TTTTTGTTTTTTTTGTG-TTTTTTGTTTTGTTTTTGTTTTTT
14576762 TTTTTTTTT
1 TTTTTTTTT
14576771 ACCAAAGCTC
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
45 5 0.10
46 8 0.15
47 14 0.27
48 25 0.48
ACGTcount: A:0.00, C:0.01, G:0.11, T:0.88
Consensus pattern (45 bp):
TTTTTTTTTGTTTTTTTTGTGTTTTTTGTTTTGTTTTTGTTTTTT
Found at i:14576764 original size:19 final size:19
Alignment explanation
Indices: 14576669--14576767 Score: 111
Period size: 19 Copynumber: 5.5 Consensus size: 19
14576659 AACATTGTCA
14576669 TTTTTTTTTGTTTTT-TTT
1 TTTTTTTTTGTTTTTGTTT
* *
14576687 GTGTTTTTTG-TTTTGTTT
1 TTTTTTTTTGTTTTTGTTT
*
14576705 TTTGTTCTTT-TTTTTG--T
1 TTT-TTTTTTGTTTTTGTTT
*
14576722 TTTTGTTTT-TTTTTGTTT
1 TTTTTTTTTGTTTTTGTTT
14576740 TTTTTTTTTGTTTTTGTTT
1 TTTTTTTTTGTTTTTGTTT
14576759 TTTTTTTTT
1 TTTTTTTTT
14576768 TTTACCAAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
16 10 0.15
17 8 0.12
18 21 0.31
19 28 0.42
ACGTcount: A:0.00, C:0.01, G:0.11, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTGTTTTTGTTT
Found at i:14576910 original size:42 final size:42
Alignment explanation
Indices: 14576777--14577071 Score: 436
Period size: 42 Copynumber: 7.1 Consensus size: 42
14576767 TTTTACCAAA
* * * *
14576777 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAA-GTAAATT
*
14576820 GCTCCTCTAAACAAAGGCACCACGACTTT--GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAGTAAATT
*
14576860 GCTCCTCTAAACAGAGGTACCACGACTTTGGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAGTAAATT
* **
14576902 GCTTCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAGTAAATT
* * *
14576944 GCTCCTCTAAATAGAGACACCACGACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAGTAAATT
*
14576985 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAGTAAATT
14577027 GCTCCTCTAAACAGAGGCACCACGACTTT-GGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAGTAAATT
14577068 GCTC
1 GCTC
14577072 ATTGACAATC
Statistics
Matches: 232, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 33 0.14
41 57 0.25
42 116 0.50
43 26 0.11
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGGAAAGTAAATT
Found at i:14577007 original size:125 final size:124
Alignment explanation
Indices: 14576777--14577071 Score: 468
Period size: 125 Copynumber: 2.4 Consensus size: 124
14576767 TTTTACCAAA
* * *
14576777 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACA-TAAATTGCTCCTCTAAACAAAGGCACC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-AGTAAATTGCTCCTCTAAACAAAGACACC
* *
14576841 ACGACTTTGAAAGTAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGGAAAGTAAATT
64 ACGACTTTGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* * *
14576902 GCTTCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAATAGAGACACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAAAGACACCAC
14576967 GACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
66 GACTTTG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
14577027 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATTGCTC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTC
14577072 ATTGACAATC
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
123 1 0.01
124 50 0.32
125 107 0.68
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (124 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAAAGACACCAC
GACTTTGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:14577008 original size:83 final size:82
Alignment explanation
Indices: 14576777--14577071 Score: 448
Period size: 83 Copynumber: 3.5 Consensus size: 82
14576767 TTTTACCAAA
* * * *
14576777 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAAAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
14576842 CGACTTTG-AAAGTAAATT
64 CGACTTTGAAAAGTAAATT
* * *
14576860 GCTCCTCTAAACAGAGGTACCACGACTTTGGGAAAGTAAATTGCTTCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
14576925 GACTTTGAAAAAGTAAATT
65 GACTTTG-AAAAGTAAATT
* *
14576944 GCTCCTCTAAATAGAGACACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
14577009 ACTTTGGAAAAGTAAATT
66 ACTTT-GAAAAGTAAATT
*
14577027 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTC
14577072 ATTGACAATC
Statistics
Matches: 193, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
82 34 0.18
83 121 0.63
84 38 0.20
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAGTAAATT
Found at i:14578317 original size:8 final size:7
Alignment explanation
Indices: 14578302--14578359 Score: 64
Period size: 8 Copynumber: 8.0 Consensus size: 7
14578292 AATTTGAATC
14578302 TCTTTTT
1 TCTTTTT
14578309 TCATTTTT
1 TC-TTTTT
14578317 TCATTTTT
1 TC-TTTTT
*
14578325 TCTTCTT
1 TCTTTTT
14578332 TCTTTCTT
1 TCTTT-TT
*
14578340 TTTTTTT
1 TCTTTTT
14578347 TCTTTTT
1 TCTTTTT
14578354 T-TTTTT
1 TCTTTTT
14578360 CATCATCTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
6 5 0.11
7 19 0.42
8 21 0.47
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (7 bp):
TCTTTTT
Found at i:14578342 original size:19 final size:18
Alignment explanation
Indices: 14578312--14578359 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
14578302 TCTTTTTTCA
*
14578312 TTTTTTCATTTTTTCTTC
1 TTTTTTCTTTTTTTCTTC
*
14578330 TTTCTTTCTTTTTTTTTTC
1 TTT-TTTCTTTTTTTCTTC
14578349 TTTTTT-TTTTT
1 TTTTTTCTTTTT
14578360 CATCATCTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 5 0.19
18 6 0.22
19 16 0.59
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTCTTTTTTTCTTC
Found at i:14578351 original size:11 final size:11
Alignment explanation
Indices: 14578320--14578358 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
14578310 CATTTTTTCA
*
14578320 TTTTTTCTTCT
1 TTTTTTCTTTT
*
14578331 TTCTTTCTTTT
1 TTTTTTCTTTT
14578342 TTTTTTCTTTT
1 TTTTTTCTTTT
14578353 TTTTTT
1 TTTTTT
14578359 TCATCATCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:14578375 original size:19 final size:19
Alignment explanation
Indices: 14578346--14578388 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
14578336 TCTTTTTTTT
14578346 TTCTT-TTTTTTTTTCATCA
1 TTCTTCTTTTTTTTTC-TCA
14578365 -TCTTCTTTTTTTTTCTCA
1 TTCTTCTTTTTTTTTCTCA
14578383 TTCTTC
1 TTCTTC
14578389 ACCTATTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCTTCTTTTTTTTTCTCA
Found at i:14587132 original size:52 final size:51
Alignment explanation
Indices: 14587060--14587173 Score: 140
Period size: 52 Copynumber: 2.2 Consensus size: 51
14587050 ATAAAAATGA
* * *
14587060 AATTGGGCCTTAAGATGGATTTTGTGCTTTAATTATCATATTTGGGCTTCTTG
1 AATTGGGCCTTAAAATGGATTTTGGGCTTTAACT-TCATATTTGGG-TTCTTG
* * *
14587113 AATTGGG-TTTAAAATGGATTTTGGGCTTTTACTTCATATTTGGGTTTTTG
1 AATTGGGCCTTAAAATGGATTTTGGGCTTTAACTTCATATTTGGGTTCTTG
*
14587163 AATTGGACCTT
1 AATTGGGCCTT
14587174 CAGATTTGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
50 11 0.21
51 13 0.25
52 21 0.40
53 7 0.13
ACGTcount: A:0.21, C:0.10, G:0.23, T:0.46
Consensus pattern (51 bp):
AATTGGGCCTTAAAATGGATTTTGGGCTTTAACTTCATATTTGGGTTCTTG
Found at i:14588340 original size:26 final size:26
Alignment explanation
Indices: 14588284--14588348 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
14588274 ATCGATATCT
*
14588284 GGGCCTGATTAAGTCCATTAACATCT
1 GGGCCTGATTAAGTCCATTAACATCC
* * *
14588310 AGGCCTGATT-AGATCCGTTGACATCC
1 GGGCCTGATTAAG-TCCATTAACATCC
*
14588336 GGGCCCGATTAAG
1 GGGCCTGATTAAG
14588349 CTCATTAGTC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.06
26 27 0.87
27 2 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GGGCCTGATTAAGTCCATTAACATCC
Found at i:14588414 original size:16 final size:17
Alignment explanation
Indices: 14588389--14588436 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
14588379 TTTTTAATTG
*
14588389 TTATTGTTATATTA-CA
1 TTATTATTATATTATCA
*
14588405 TTATTATTATCTTATCA
1 TTATTATTATATTATCA
14588422 -TATTATTATTATTAT
1 TTATTATTA-TATTAT
14588437 TTTGTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 20 0.74
17 7 0.26
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (17 bp):
TTATTATTATATTATCA
Found at i:14588807 original size:20 final size:21
Alignment explanation
Indices: 14588778--14588817 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
14588768 GTAGTTCTGG
* *
14588778 GGTGATTTTG-GGTTTCAAAA
1 GGTGAATTTGAGGTTGCAAAA
14588798 GGTGAATTTGAGGTTGCAAA
1 GGTGAATTTGAGGTTGCAAA
14588818 GGGTTCATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.05, G:0.33, T:0.35
Consensus pattern (21 bp):
GGTGAATTTGAGGTTGCAAAA
Found at i:14588966 original size:19 final size:19
Alignment explanation
Indices: 14588942--14588981 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
14588932 TCCGGCGAGA
14588942 TTTTCAGAAACTGATGAGT
1 TTTTCAGAAACTGATGAGT
*
14588961 TTTTCAGAAACTGGTGAGT
1 TTTTCAGAAACTGATGAGT
14588980 TT
1 TT
14588982 CTAGTTTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (19 bp):
TTTTCAGAAACTGATGAGT
Found at i:14589274 original size:19 final size:19
Alignment explanation
Indices: 14589250--14589299 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
14589240 CCAATCGTAG
*
14589250 ATTTTTCTTTTTTCATTTT
1 ATTTTTATTTTTTCATTTT
*
14589269 ATTTTTATTTTTTGATTTT
1 ATTTTTATTTTTTCATTTT
14589288 A-TTTTATTTTTT
1 ATTTTTATTTTTT
14589300 AATCCATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (19 bp):
ATTTTTATTTTTTCATTTT
Found at i:14590026 original size:31 final size:31
Alignment explanation
Indices: 14589964--14590029 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
14589954 AATTTATCCT
* * *
14589964 TTTTCATTGCTTATATCTTCTTTATTATTTA
1 TTTTCATTGCGTATATCTTCCTAATTATTTA
*
14589995 TTTTCATTGCGTATA-CTTACCTAATTGTTTA
1 TTTTCATTGCGTATATCTT-CCTAATTATTTA
14590026 TTTT
1 TTTT
14590030 GTCTGTCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.20, C:0.14, G:0.06, T:0.61
Consensus pattern (31 bp):
TTTTCATTGCGTATATCTTCCTAATTATTTA
Found at i:14599335 original size:89 final size:88
Alignment explanation
Indices: 14599184--14599620 Score: 422
Period size: 89 Copynumber: 4.9 Consensus size: 88
14599174 AATCATTTCT
* * *
14599184 TATGATTCGTGGTTTCATCTCGATCATTTA-TTTCTGACCTCGACTCGATCCTGGTCATTTTATT
1 TATGATTCGTGGTTTCATCTCGATCATTTATTTTC-GACCTCAACTCGATCCTAGTCACTTTATT
* *
14599248 TTGATTCGTGGTTTTATCAAGGTCA
65 TTGACTCGTGGTTTCATC-AGGTCA
* * *
14599273 TATGATTCGTGATTTCATCTCGATCATTTATTTTCGACCTCAACT-TAGTCCTAGTCGCTTTATT
1 TATGATTCGTGGTTTCATCTCGATCATTTATTTTCGACCTCAACTCGA-TCCTAGTCACTTTATT
14599337 TTGACT-GTGGCTTCGTC-TCA-GTCA
65 TTGACTCGTGG-TT--TCATCAGGTCA
* * * * *
14599361 CATGATTCATGGTTTCAT-TATGATCATTTA-TTTCTAACCTCAACTTGATCCTAGTCACTTTAT
1 TATGATTCGTGGTTTCATCT-CGATCATTTATTTTC-GACCTCAACTCGATCCTAGTCACTTTAT
*
14599424 TTTGACTCGTGGTTTCATGCCGGTCA
64 TTTGACTCGTGGTTTCAT-CAGGTCA
* * ** * * * * *
14599450 CATGATTCGTGATTTTGTCTCGATTATTTATTTTTGACCTTAACTCGATCTTAGTCGCTTTATTT
1 TATGATTCGTGGTTTCATCTCGATCATTTATTTTCGACCTCAACTCGATCCTAGTCACTTTATTT
* * *
14599515 TGATTCGTGGTTTCGTCTCGGTC-
66 TGACTCGTGGTTTCATC-AGGTCA
* * * ** *
14599538 TCATGATTCATGGTTTCATCTTGACCATTTATTTTCGACCTTGACTCGATCTTAGTCACTTTATT
1 T-ATGATTCGTGGTTTCATCTCGATCATTTATTTTCGACCTCAACTCGATCCTAGTCACTTTATT
*
14599603 TTGACTTGTGGTTTCATC
65 TTGACTCGTGGTTTCATC
14599621 CTGGTCCCTT
Statistics
Matches: 288, Mismatches: 44, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
86 2 0.01
87 6 0.02
88 67 0.23
89 202 0.70
90 10 0.03
91 1 0.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (88 bp):
TATGATTCGTGGTTTCATCTCGATCATTTATTTTCGACCTCAACTCGATCCTAGTCACTTTATTT
TGACTCGTGGTTTCATCAGGTCA
Found at i:14599481 original size:177 final size:178
Alignment explanation
Indices: 14599185--14599620 Score: 567
Period size: 177 Copynumber: 2.5 Consensus size: 178
14599175 ATCATTTCTT
* * * *
14599185 ATGATTCGTGGTTTCATCTCGATCATTTATTTCTGACCTCGACTCGATCCTGGTCATTTTATTTT
1 ATGATTCATGGTTTCATCTTGATCATTTATTTCTGACCTCGACTCGATCCTAGTCACTTTATTTT
* * *
14599250 GATTCGTGGTTTTATCAAGGTCATATGATTCGTGATTTCATCTCGATCATTTATTTTCGACCTCA
66 GACTCGTGGTTTCATCAAGGTCACATGATTCGTGATTTCATCTCGATCATTTATTTTCGACCTCA
14599315 ACTTAG-TCCTAGTCGCTTTATTTTGACT-GTGGCTTCGTCTCAGTCAC
131 AC-TAGATCCTAGTCGCTTTATTTTGACTCGTGGCTTCGTCTCAGTCAC
* * *
14599362 ATGATTCATGGTTTCAT-TATGATCATTTATTTCTAACCTCAACTTGATCCTAGTCACTTTATTT
1 ATGATTCATGGTTTCATCT-TGATCATTTATTTCTGACCTCGACTCGATCCTAGTCACTTTATTT
* ** * *
14599426 TGACTCGTGGTTTCATGC-CGGTCACATGATTCGTGATTTTGTCTCGATTATTTATTTTTGACCT
65 TGACTCGTGGTTTCAT-CAAGGTCACATGATTCGTGATTTCATCTCGATCATTTATTTTCGACCT
* * * * * * *
14599490 TAACTCGATCTTAGTCGCTTTATTTTGATTCGTGGTTTCGTCTCGGTCTC
129 CAACTAGATCCTAGTCGCTTTATTTTGACTCGTGGCTTCGTCTCAGTCAC
* * *
14599540 ATGATTCATGGTTTCATCTTGACCATTTATTT-TCGACCTTGACTCGATCTTAGTCACTTTATTT
1 ATGATTCATGGTTTCATCTTGATCATTTATTTCT-GACCTCGACTCGATCCTAGTCACTTTATTT
*
14599604 TGACTTGTGGTTTCATC
65 TGACTCGTGGTTTCATC
14599621 CTGGTCCCTT
Statistics
Matches: 224, Mismatches: 29, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
176 3 0.01
177 134 0.60
178 86 0.38
179 1 0.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (178 bp):
ATGATTCATGGTTTCATCTTGATCATTTATTTCTGACCTCGACTCGATCCTAGTCACTTTATTTT
GACTCGTGGTTTCATCAAGGTCACATGATTCGTGATTTCATCTCGATCATTTATTTTCGACCTCA
ACTAGATCCTAGTCGCTTTATTTTGACTCGTGGCTTCGTCTCAGTCAC
Found at i:14599934 original size:26 final size:26
Alignment explanation
Indices: 14599901--14599970 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
14599891 TCAATGTCTG
* *
14599901 GGCCTGATTAAGCCCATTGACATCTA
1 GGCCTGATTAGGCCCATTGACATCCA
* *
14599927 GGTCTGATTAGGTCCATTGACATCCA
1 GGCCTGATTAGGCCCATTGACATCCA
*
14599953 GGCCCGATTAGGCCCATT
1 GGCCTGATTAGGCCCATT
14599971 AGTGCTTAGG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (26 bp):
GGCCTGATTAGGCCCATTGACATCCA
Found at i:14600046 original size:3 final size:3
Alignment explanation
Indices: 14600038--14600149 Score: 116
Period size: 3 Copynumber: 37.3 Consensus size: 3
14600028 TATCTTATCA
14600038 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * * * * *
14600086 TAT CAT CAT CAT TAT CAT CAT CAT CAT CAT CAT CAT CAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14600134 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
14600150 CATTTTTTGT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 105 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:14602045 original size:45 final size:45
Alignment explanation
Indices: 14601994--14602079 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
14601984 TACCTACCCA
** * *
14601994 AACAACATGAGTAAAATGGTAACAATTGGGACCATTTCAACATTG
1 AACAACACCAGTAAAATGATAACAATTGGGAACATTTCAACATTG
* * *
14602039 AACAACACCAGTGAAATGATATCAATTTGGAACATTTCAAC
1 AACAACACCAGTAAAATGATAACAATTGGGAACATTTCAAC
14602080 CGATTACAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.24
Consensus pattern (45 bp):
AACAACACCAGTAAAATGATAACAATTGGGAACATTTCAACATTG
Found at i:14607627 original size:60 final size:60
Alignment explanation
Indices: 14607547--14607667 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
14607537 TTATGTTGCT
* *
14607547 AGCAAGCTTGATAGCCTTGCTTATACCCCATTTCATATCAACTTTTCTTCTTTTTGGTTG
1 AGCAAGCTTGATAACCTTGCTTATACCCCATTTCATATAAACTTTTCTTCTTTTTGGTTG
*
14607607 AGCAAGCTTGATAACCTTGCTTGTACCCCATTTCATATAAACTTTTCTTCTTTTTGGTTG
1 AGCAAGCTTGATAACCTTGCTTATACCCCATTTCATATAAACTTTTCTTCTTTTTGGTTG
14607667 A
1 A
14607668 CTTATTTTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.43
Consensus pattern (60 bp):
AGCAAGCTTGATAACCTTGCTTATACCCCATTTCATATAAACTTTTCTTCTTTTTGGTTG
Found at i:14609282 original size:18 final size:18
Alignment explanation
Indices: 14609261--14609302 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
14609251 TTCTTGCTAA
*
14609261 TTAGAAGTTCTAAA-CAAT
1 TTAGAAG-TCCAAATCAAT
14609279 TTAGAAAGTCCAAATCAAT
1 TTAG-AAGTCCAAATCAAT
14609298 TTAGA
1 TTAGA
14609303 TTTTATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (18 bp):
TTAGAAGTCCAAATCAAT
Found at i:14615607 original size:92 final size:93
Alignment explanation
Indices: 14615478--14615661 Score: 325
Period size: 92 Copynumber: 2.0 Consensus size: 93
14615468 TATAAATAAG
**
14615478 TTTATTTAAACTGATTTTTTTATGAATATATTTTGCCTAGACTTTATTGTTACCTAAAATTTACT
1 TTTATTTAAACTGATTTTTCGATGAATATATTTTGCCTAGACTTTATTGTTACCTAAAATTTACT
14615543 CATCTCATCTTGGCATTTGTTTTGTTTA
66 CATCTCATCTTGGCATTTGTTTTGTTTA
*
14615571 TTTATTTGAACTGA-TTTTCGATGAATATATTTTGCCTAGACTTTATTGTTACCTAAAATTTACT
1 TTTATTTAAACTGATTTTTCGATGAATATATTTTGCCTAGACTTTATTGTTACCTAAAATTTACT
*
14615635 CATCTTATCTTGGCATTTGTTTTGTTT
66 CATCTCATCTTGGCATTTGTTTTGTTT
14615662 GTTTTTCCAA
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 74 0.85
93 13 0.15
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.52
Consensus pattern (93 bp):
TTTATTTAAACTGATTTTTCGATGAATATATTTTGCCTAGACTTTATTGTTACCTAAAATTTACT
CATCTCATCTTGGCATTTGTTTTGTTTA
Found at i:14621499 original size:161 final size:160
Alignment explanation
Indices: 14621141--14622644 Score: 1438
Period size: 161 Copynumber: 9.4 Consensus size: 160
14621131 AAGTAAGTTT
* * * *
14621141 ATGATATCAAACTTATCCGAATGAA-TGAACTTGGTTTTCATTA-TTGACATGTGTG-AAAAGTT
1 ATGATATTAAACTTATCTGAAT-AATTGAACTTGG-TTTCA-CAGTTGATATGTGTGAAAAAGTT
**** * * *** * ** *
14621203 GCAATTTATGTCTGTTTAGGACTTTTTGTGCCGTTAAAAAATAAAAGTATAAATTTACAATTATT
63 ATTGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATT
* * ** * *
14621268 GTT-TAGTTTTAAGAATTTTAATAGTTTTAATAC
128 GTTCTA-TTTTAACAGTTTGGATAGCTTCAATAC
* * * * *
14621301 ATGATATTAAACTTGTCTGAATAATTGAACTTTGATTTCAC-GATTGATATATATGAAAAAGTTG
1 ATGATATTAAACTTATCTGAATAATTGAAC-TTGGTTTCACAG-TTGATATGTGTGAAAAAGTTA
* * * * * *
14621365 TTGTTTATGTTTGTTTATGACTTTTTATACCGTTAAAATGCAAAAATGCAAAATTTACTATTGTT
64 TTGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGC-AAATTTACTATTATT
*
14621430 GGTCTATTTTAACAGTTTGGATAGCTTCAAT-C
128 GTTCTATTTTAACAGTTTGGATAGCTTCAATAC
* ** * * *
14621462 TATAATATTAAACTTATCCAAATTATTGAACTTGATTTCCACAGTTGATATGTATGAAAAAGTTA
1 -ATGATATTAAACTTATCTGAATAATTGAACTTGGTTT-CACAGTTGATATGTGTGAAAAAGTTA
* * * * * * *
14621527 TCGTTTACGTCTATGTAGGACTTTTTGTGTCGTTAATAGGCAAAAATACAAATTTACTATTATTG
64 TTGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTG
*
14621592 TTCTATTTTAACAATTTGGATAGCTTCAATAC
129 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * * *
14621624 ATTATATTAAACATGTCTGAATAATTGAACTTGATTTTCACAGTTGATATGTGTGAAAAAGCTAA
1 ATGATATTAAACTTATCTGAATAATTGAACTTG-GTTTCACAGTTGATATGTGTGAAAAAGTTAT
* * * *
14621689 TGTTTACGTCTGTTTAGGACTTTTTATGTCGTTAAAAGGCAAAAATGCTAATTTGCTATTTTTGT
65 TGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTGT
* * *
14621754 TCTATTTTAATAGTTTAGATAGCCTCAATAC
130 TCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * *** *
14621785 ATGATAATAAACTTGTCTGGATGGCTGAACTTGGTTTCTA-TGATTGATATGTGTGAAAAAGTTA
1 ATGATATTAAACTTATCTGAATAATTGAACTTGGTTTC-ACAG-TTGATATGTGTGAAAAAGTTA
** * * ** * *
14621849 TCATTTACATCTATTTAGGACTTTTT-TGCTATTAAAAGGCAAAAATGCAAATTTACTGTTATTA
64 TTGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTG
* *
14621913 TTTTATTTTAACAGTTTGGATAGCTTTAATAC
129 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * *
14621945 ATGGTATT--A-TT-TC-GAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTGT
1 ATGATATTAAACTTATCTGAATAATTGAACTTGGTTT-CACAGTTGATATGTGTGAAAAAGTTAT
* * ** * * * *
14622005 TGCTTACCTCTGTTTAAAACTTTTTATGCTGTTAAAAAGC-AAAATGTAAAATTACTATTATTGT
65 TGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTGT
* * *
14622069 TCTATTTTAACAATTTGAATAGCTTTAATAC
130 TCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * *
14622100 ATGATATTAAACTTGTCTGAATAATTGAAC-CGGTTTTTACAGTTGATATGTGTGAAAAAGTTAA
1 ATGATATTAAACTTATCTGAATAATTGAACTTGG-TTTCACAGTTGATATGTGTGAAAAAGTTAT
* ** * * *
14622164 TGTTTACATCTGTTTAGGACTTTTTATGTTGTTAAAAGACAAAAATGTAAATTTGCTATTATTGT
65 TGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTGT
* *
14622229 TCTATTTTAACAGCTTGGATAGCTTCAATAG
130 TCTATTTTAACAGTTTGGATAGCTTCAATAC
** ** * * *
14622260 ATGATAAGAAA-TTAGTCCAAATGATTGAAATTGGTTTCTACAGTTGATATATGTGAAAAAGTTA
1 ATGATATTAAACTTA-TCTGAATAATTGAACTTGGTTTC-ACAGTTGATATGTGTGAAAAAGTTA
* * * * * * * * *
14622324 TCGTTTAAGTCTATTTAGAACTTTTTGTGTCGTTAATAGGCAAAAATACAAATTTGCTATTATTG
64 TTGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTG
* *
14622389 TTCTATTTTAATAGTTTGGATAGTTTCAATAC
129 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * *
14622421 ATCATATTAAACTTATCTAAATAATTGAACTTGGTTTTCATAGTTGATATGTGTGAAAAAGCTAA
1 ATGATATTAAACTTATCTGAATAATTGAACTTGG-TTTCACAGTTGATATGTGTGAAAAAGTTAT
* * * * * *
14622486 TGTTTACATTTGTTTAGGACTTTTTATGCCATTAAAAGGAAAAAATGAAAATTTGCTATTATTGT
65 TGTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTGT
* * *
14622551 TTTGTTTTAACAATTTGGATAGCTTCAATAC
130 TCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * * *
14622582 ATGATAATAAACTTATCTGAATGATTGAACTTGGTTTCTATATTTGATATATGTGAAATAGTT
1 ATGATATTAAACTTATCTGAATAATTGAACTTGGTTTC-ACAGTTGATATGTGTGAAAAAGTT
14622645 TTATCGTTAA
Statistics
Matches: 1105, Mismatches: 209, Indels: 59
0.80 0.15 0.04
Matches are distributed among these distances:
155 111 0.10
156 16 0.01
157 3 0.00
158 3 0.00
159 64 0.06
160 195 0.18
161 581 0.53
162 129 0.12
163 3 0.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (160 bp):
ATGATATTAAACTTATCTGAATAATTGAACTTGGTTTCACAGTTGATATGTGTGAAAAAGTTATT
GTTTACGTCTGTTTAGGACTTTTTATGCCGTTAAAAGGCAAAAATGCAAATTTACTATTATTGTT
CTATTTTAACAGTTTGGATAGCTTCAATAC
Found at i:14622771 original size:134 final size:134
Alignment explanation
Indices: 14622517--14622778 Score: 346
Period size: 134 Copynumber: 2.0 Consensus size: 134
14622507 TTTTATGCCA
* * *
14622517 TTAAAAGGAAAAAATGAAAATTTGCTATTATTGTTTTGTTTTAACAATTTGGATAGCTTCAATAC
1 TTAAAAGGAAAAAATGAAAATTTGCTATTATTATTTTATTTTAACAATTTAGATAGCTTCAATAC
* * * * *
14622582 ATGATAATAAACTTATCTGAATGATTGAACTTGGTTTCTATATTTGATATATGTGAAATAGTTTT
66 ATGATAATAAACTTATCTAAATGATTAAACTTGGTTTCTATAGTTAATATATGTGAAAAAGTTTT
14622647 ATCG
131 ATCG
* * * * *
14622651 TTAAAAGGCAAAATTGCAAATTTGCTATTATTATTTTATTTTAATAGTTTAGATAGCTTCAATAC
1 TTAAAAGGAAAAAATGAAAATTTGCTATTATTATTTTATTTTAACAATTTAGATAGCTTCAATAC
* * * * *
14622716 ATGATATTAAACTTTTTTAAATGATTAAATTTGGTTT-TCATAGTTAATATGTGTGAAAAAGTT
66 ATGATAATAAACTTATCTAAATGATTAAACTTGGTTTCT-ATAGTTAATATATGTGAAAAAGTT
14622779 GTTGTTTACC
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
133 1 0.01
134 108 0.99
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (134 bp):
TTAAAAGGAAAAAATGAAAATTTGCTATTATTATTTTATTTTAACAATTTAGATAGCTTCAATAC
ATGATAATAAACTTATCTAAATGATTAAACTTGGTTTCTATAGTTAATATATGTGAAAAAGTTTT
ATCG
Found at i:14627344 original size:14 final size:15
Alignment explanation
Indices: 14627320--14627351 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
14627310 AATCAAAGAA
14627320 AAATAAAATAAAAAT
1 AAATAAAATAAAAAT
14627335 AAAT-AAATAAAAAT
1 AAATAAAATAAAAAT
14627349 AAA
1 AAA
14627352 GGCCAATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
AAATAAAATAAAAAT
Found at i:14627637 original size:44 final size:44
Alignment explanation
Indices: 14627586--14627842 Score: 290
Period size: 44 Copynumber: 5.9 Consensus size: 44
14627576 TTGATCAAAG
* *
14627586 CTCCTCTAAGT-AGAGGCTTAACGACTTTTGAAAAATAAACAAGA
1 CTCCTCTAA-TCAGAGGCTCAACAACTTTTGAAAAATAAACAAGA
* * *
14627630 TTCCTCTAATCAGAGGCTCAACAACTTTTGGAAAATAAACAAGG
1 CTCCTCTAATCAGAGGCTCAACAACTTTTGAAAAATAAACAAGA
* * * *
14627674 CTCCTCTAATTAGAGGCTCAACGACTTTGGAAAGATAAACAA-A
1 CTCCTCTAATCAGAGGCTCAACAACTTTTGAAAAATAAACAAGA
* ** * * *
14627717 GTCCTCTAATCAGAGGCTCAAGGACTTTAG-AAAATAAGCAAGG
1 CTCCTCTAATCAGAGGCTCAACAACTTTTGAAAAATAAACAAGA
*
14627760 CTCCTCTAATCAGAGGCTCAACAACTTTTGGAAAATAAGTA-AAG-
1 CTCCTCTAATCAGAGGCTCAACAACTTTTGAAAAATAA--ACAAGA
* *
14627804 CTCCTCTAATTAGAGGCTTAACAACTTTTGAAAAATAAA
1 CTCCTCTAATCAGAGGCTCAACAACTTTTGAAAAATAAA
14627843 TGGCTCCTTT
Statistics
Matches: 181, Mismatches: 27, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
42 10 0.06
43 53 0.29
44 115 0.64
45 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (44 bp):
CTCCTCTAATCAGAGGCTCAACAACTTTTGAAAAATAAACAAGA
Found at i:14627821 original size:130 final size:132
Alignment explanation
Indices: 14627581--14627842 Score: 377
Period size: 130 Copynumber: 2.0 Consensus size: 132
14627571 AAATTTTGAT
* * *
14627581 CAAAGCTCCTCTAAGTAGAGGCTTAACGACTTTTGAAAAATAAACAAGATTCCTCTAATCAGAGG
1 CAAAGCTCCTCTAAGTAGAGGCTCAACGACTTTAGAAAAATAAACAAGACTCCTCTAATCAGAGG
* * *
14627646 CTCAACAACTTTTGGAAAATAAACAAGGCTCCTCTAATTAGAGGCTCAACGACTTTGGAAAGATA
66 CTCAACAACTTTTGGAAAATAAACAAAGCTCCTCTAATTAGAGGCTCAACAACTTTGGAAAAATA
14627711 AA
131 AA
* * *
14627713 CAAAG-TCCTCTAA-TCAGAGGCTCAAGGACTTTAG-AAAATAAGCAAGGCTCCTCTAATCAGAG
1 CAAAGCTCCTCTAAGT-AGAGGCTCAACGACTTTAGAAAAATAAACAAGACTCCTCTAATCAGAG
** * *
14627775 GCTCAACAACTTTTGGAAAATAAGTAAAGCTCCTCTAATTAGAGGCTTAACAACTTTTGAAAAAT
65 GCTCAACAACTTTTGGAAAATAAACAAAGCTCCTCTAATTAGAGGCTCAACAACTTTGGAAAAAT
14627840 AAA
130 AAA
14627843 TGGCTCCTTT
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
130 87 0.75
131 24 0.21
132 5 0.04
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.24
Consensus pattern (132 bp):
CAAAGCTCCTCTAAGTAGAGGCTCAACGACTTTAGAAAAATAAACAAGACTCCTCTAATCAGAGG
CTCAACAACTTTTGGAAAATAAACAAAGCTCCTCTAATTAGAGGCTCAACAACTTTGGAAAAATA
AA
Found at i:14627880 original size:130 final size:130
Alignment explanation
Indices: 14627612--14627885 Score: 336
Period size: 130 Copynumber: 2.1 Consensus size: 130
14627602 CTTAACGACT
* * *
14627612 TTTGAAAAATAAACAAGATTCCTCTAATCAGAGGCTCAACAACTTTTGGAAAATAAACAAGGCTC
1 TTTGGAAAATAAACAAGACTCCTCTAATCAGAGGCTCAACAACTTTTGGAAAATAAACAAAGCTC
* * * *
14627677 CTCTAATTAGAGGCTCAACGACTTTGGAAAGATAAACAAAGTCCTCTAATCAGAGGCTCAAGGAC
66 CTCTAATTAGAGGCTCAACAACTTTGGAAAAATAAACAAAGTCCTCTAAACAGAGGCACAAGGAC
* * * **
14627742 TTTAGAAAATAAGCAAGGCTCCTCTAATCAGAGGCTCAACAACTTTTGGAAAATAAGTAAAGCTC
1 TTTGGAAAATAAACAAGACTCCTCTAATCAGAGGCTCAACAACTTTTGGAAAATAAACAAAGCTC
* * ** * * *
14627807 CTCTAATTAGAGGCTTAACAACTTTTGAAAAAT-AA-ATGGCTCCTTTAAACAGAGGCAACTATG
66 CTCTAATTAGAGGCTCAACAACTTTGGAAAAATAAACAAAG-TCCTCTAAACAGAGGC-ACAAGG
14627870 AC
129 AC
14627872 TTTGGAAAAATAAA
1 TTTGG-AAAATAAA
14627886 TTACTCCTTG
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
128 2 0.02
129 16 0.13
130 95 0.79
131 7 0.06
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (130 bp):
TTTGGAAAATAAACAAGACTCCTCTAATCAGAGGCTCAACAACTTTTGGAAAATAAACAAAGCTC
CTCTAATTAGAGGCTCAACAACTTTGGAAAAATAAACAAAGTCCTCTAAACAGAGGCACAAGGAC
Found at i:14628453 original size:22 final size:21
Alignment explanation
Indices: 14628406--14628464 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
14628396 GGTTTCACTC
14628406 CTCAAAGATTCTCATTTTGAAA
1 CTCAAAGATTCTCA-TTTGAAA
**
14628428 CTCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGA-AA
*
14628450 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
14628465 CAAAATATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 5 0.15
22 28 0.85
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.37
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:14629727 original size:15 final size:15
Alignment explanation
Indices: 14629700--14629728 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14629690 CTTTTTTCAT
14629700 TTTCTTATTTTTTTC
1 TTTCTTATTTTTTTC
14629715 TTTCTTATTTTTTT
1 TTTCTTATTTTTTT
14629729 TCATTGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTCTTATTTTTTTC
Found at i:14636238 original size:6 final size:6
Alignment explanation
Indices: 14636227--14636271 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
14636217 AATCAACTAA
14636227 AAAAAT AAAAAT --AAAT -AAAAT AAAAAT AAATAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AA-AAAT AAAAAT AAAA
14636272 GCCAATTGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 4 0.11
5 4 0.11
6 19 0.54
7 4 0.11
8 4 0.11
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:14636244 original size:10 final size:10
Alignment explanation
Indices: 14636225--14636270 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
14636215 TAAATCAACT
14636225 AAAA-AAATA
1 AAAATAAATA
14636234 AAAATAAAT-
1 AAAATAAATA
14636243 AAAATAAA-A
1 AAAATAAATA
14636252 ATAAATAAATA
1 A-AAATAAATA
14636263 AAAATAAA
1 AAAATAAA
14636271 AGCCAATTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
9 13 0.39
10 18 0.55
11 2 0.06
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AAAATAAATA
Found at i:14636248 original size:15 final size:15
Alignment explanation
Indices: 14636224--14636270 Score: 80
Period size: 14 Copynumber: 3.3 Consensus size: 15
14636214 ATAAATCAAC
14636224 TAAA-AAAATAAAAA
1 TAAATAAAATAAAAA
14636238 TAAATAAAATAAAAA
1 TAAATAAAATAAAAA
14636253 TAAAT-AAATAAAAA
1 TAAATAAAATAAAAA
14636267 TAAA
1 TAAA
14636271 AGCCAATTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 17 0.53
15 15 0.47
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAATAAAATAAAAA
Found at i:14636257 original size:19 final size:19
Alignment explanation
Indices: 14636214--14636271 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 19
14636204 AATAAAACAG
*
14636214 ATAAATCAACTAAAA-AAATA
1 ATAAAT-AAATAAAATAAA-A
14636234 A-AAATAAATAAAATAAAA
1 ATAAATAAATAAAATAAAA
14636252 ATAAATAAATAAAAATAAAA
1 ATAAATAAAT-AAAATAAAA
14636272 GCCAATTGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
18 9 0.26
19 15 0.44
20 10 0.29
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (19 bp):
ATAAATAAATAAAATAAAA
Found at i:14647883 original size:24 final size:25
Alignment explanation
Indices: 14647843--14647890 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
14647833 AATAATAAAT
*
14647843 AAATAAATAAATCTAAAAA-AGAAC
1 AAATAAATAAATATAAAAATAGAAC
14647867 AAATAAATTAAA-ATAAAAATAGAA
1 AAATAAA-TAAATATAAAAATAGAA
14647891 AAAAATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (25 bp):
AAATAAATAAATATAAAAATAGAAC
Found at i:14648963 original size:2 final size:2
Alignment explanation
Indices: 14648956--14648981 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14648946 AGGGCGTGTC
14648956 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14648982 ATGAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14650013 original size:32 final size:32
Alignment explanation
Indices: 14649975--14650058 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 32
14649965 TAAGTATATT
14649975 TATTTTTTAATATAATATAA-TTATATAAAT-A
1 TATTTTTTAATATAATATAAGTTAT-TAAATAA
*
14650006 TAATTTTTTTAT-TAA-ATTAAGTTATTAAATAA
1 T-ATTTTTTAATATAATA-TAAGTTATTAAATAA
14650038 TATCTTTATTAATATAATATA
1 TAT-TTT-TTAATATAATATA
14650059 TAAATATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
30 1 0.02
31 14 0.33
32 18 0.42
33 4 0.09
34 5 0.12
35 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (32 bp):
TATTTTTTAATATAATATAAGTTATTAAATAA
Found at i:14650424 original size:19 final size:18
Alignment explanation
Indices: 14650402--14650450 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
14650392 TATTTTTTTA
*
14650402 ATAAAATACATATATAAAT
1 ATAAAATACATAAAT-AAT
*
14650421 ATAAAATTAAATAAATAAT
1 ATAAAA-TACATAAATAAT
*
14650440 AAAAAATACAT
1 ATAAAATACAT
14650451 TTTTATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 4 0.16
19 14 0.56
20 7 0.28
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (18 bp):
ATAAAATACATAAATAAT
Found at i:14650999 original size:13 final size:13
Alignment explanation
Indices: 14650983--14651007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14650973 AAAAATAATC
14650983 TAAAAAATAAAAT
1 TAAAAAATAAAAT
14650996 TAAAAAATAAAA
1 TAAAAAATAAAA
14651008 AATAAAGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAAAATAAAAT
Found at i:14652395 original size:22 final size:23
Alignment explanation
Indices: 14652367--14652420 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 23
14652357 AATTAAATTA
*
14652367 AAAAAAATAAAAT-TTAACAAAT
1 AAAAAAATAAAATCTTAAAAAAT
14652389 AAAAAAAT--AATCTTAAAAAAT
1 AAAAAAATAAAATCTTAAAAAAT
14652410 AAAAAAATAAA
1 AAAAAAATAAA
14652421 GGAAAAAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 3 0.11
21 16 0.57
22 8 0.29
23 1 0.04
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (23 bp):
AAAAAAATAAAATCTTAAAAAAT
Found at i:14652427 original size:21 final size:21
Alignment explanation
Indices: 14652385--14652428 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
14652375 AAAATTTAAC
* **
14652385 AAATAAAAAAATAATCTTAAA
1 AAATAAAAAAATAAACGAAAA
*
14652406 AAATAAAAAAATAAAGGAAAA
1 AAATAAAAAAATAAACGAAAA
14652427 AA
1 AA
14652429 GGGATGCCAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (21 bp):
AAATAAAAAAATAAACGAAAA
Found at i:14653045 original size:20 final size:19
Alignment explanation
Indices: 14653022--14653063 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
14653012 TATTTTAAAT
14653022 TTTTTATTTCATATTTATCA
1 TTTTTATTTCAT-TTTATCA
* *
14653042 TTTTTATTTTATTTTATGA
1 TTTTTATTTCATTTTATCA
14653061 TTT
1 TTT
14653064 ATTTTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTTATTTCATTTTATCA
Found at i:14653642 original size:59 final size:59
Alignment explanation
Indices: 14653571--14653916 Score: 440
Period size: 60 Copynumber: 5.8 Consensus size: 59
14653561 GGGAAAAGGA
* *
14653571 AAAGTTTCCAAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
1 AAAGTTTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
14653630 AAAGTTTTCAAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
1 AAAGTTTTC-AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
* * *
14653690 AAAATTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-
1 AAAGTTTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
* * *
14653748 AAA-TTTTCAAAAAAGGGA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATC
1 AAAGTTTTCAAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
* *
14653807 AAAG-TTTCAAAAAAATAATTTTTGAGGAAAAGTTGGAAGT-TCAATTTTTCCTTAAAAAT-
1 AAAGTTTTC-AAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTTGAAAATC
*
14653866 AATA-TTTTCAAAAAATACTTTTTGGGGAAAAGTTG-AAGTATGCAATTTTCC
1 AA-AGTTTTCAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTAT-CAATTTTCC
14653917 CTACACAAGA
Statistics
Matches: 256, Mismatches: 15, Indels: 32
0.84 0.05 0.11
Matches are distributed among these distances:
57 11 0.04
58 50 0.20
59 94 0.37
60 95 0.37
61 6 0.02
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.35
Consensus pattern (59 bp):
AAAGTTTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
Found at i:14653890 original size:177 final size:177
Alignment explanation
Indices: 14653589--14653916 Score: 538
Period size: 177 Copynumber: 1.9 Consensus size: 177
14653579 CAAAAAACAT
*
14653589 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAAATATTTTTT
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAAATAATTTTT
*
14653654 GGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTCAAAAAATATTTTTGGGGAAA
66 GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCAAAAAATATTTTTGGGGAAA
14653719 AGTTGAAAGTAT-CAATTTTCCTTAAAAATAAATTTTCAAAAAAGGGA
131 AGTTG-AAGTATGCAATTTTCCTTAAAAATAAATTTTCAAAAAAGGGA
* *
14653766 TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAAAG-TTTCAAAAAAATAATTTTT
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAAATAATTTTT
* *
14653830 GAGGAAAAGTTGGAAGT-TCAATTTTTCCTTAAAAAT-AATATTTTCAAAAAATACTTTTTGGGG
66 G-GGAAAAGTTGAAAGTATCAA-TTTTCCTTAAAAATCAAAATTTTCAAAAAATA-TTTTTGGGG
14653893 AAAAGTTGAAGTATGCAATTTTCC
128 AAAAGTTGAAGTATGCAATTTTCC
14653917 CTACACAAGA
Statistics
Matches: 141, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
176 45 0.32
177 96 0.68
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (177 bp):
TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAAAAAAATAATTTTT
GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCAAAAAATATTTTTGGGGAAA
AGTTGAAGTATGCAATTTTCCTTAAAAATAAATTTTCAAAAAAGGGA
Found at i:14656760 original size:10 final size:9
Alignment explanation
Indices: 14656747--14656771 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14656737 AAAAGGTCTC
14656747 AAAAAAAAG
1 AAAAAAAAG
14656756 AAAAAAAAG
1 AAAAAAAAG
14656765 AAAAAAA
1 AAAAAAA
14656772 TAAATGCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:14657112 original size:7 final size:7
Alignment explanation
Indices: 14657102--14657153 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
14657092 AACAATGGAT
*
14657102 GAAAAAT
1 GAAAAAA
14657109 GAAAAAA
1 GAAAAAA
*
14657116 AAAAAAA
1 GAAAAAA
14657123 GAAAAAA
1 GAAAAAA
14657130 -AAAGAAA
1 GAAA-AAA
14657137 -AAAAAA
1 GAAAAAA
14657143 GAAAGAAA
1 GAAA-AAA
14657151 GAA
1 GAA
14657154 GGAAAAATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
6 6 0.15
7 27 0.69
8 6 0.15
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (7 bp):
GAAAAAA
Found at i:14657127 original size:10 final size:10
Alignment explanation
Indices: 14657110--14657160 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
14657100 ATGAAAAATG
14657110 AAAA-AAAAA
1 AAAAGAAAAA
14657119 AAAAGAAAAA
1 AAAAGAAAAA
14657129 AAAAGAAAAA
1 AAAAGAAAAA
14657139 AAAAGAAAGAA
1 AAAAGAAA-AA
*
14657150 AGAAGGAAAAA
1 A-AAAGAAAAA
14657161 TGAAAAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
9 4 0.11
10 23 0.61
11 5 0.13
12 6 0.16
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:14657136 original size:24 final size:24
Alignment explanation
Indices: 14657103--14657150 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14657093 ACAATGGATG
*
14657103 AAAAATGAAAAAAAAAAAAAGAAA
1 AAAAAAGAAAAAAAAAAAAAGAAA
*
14657127 AAAAAAGAAAAAAAAAGAAAGAAA
1 AAAAAAGAAAAAAAAAAAAAGAAA
14657151 GAAGGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (24 bp):
AAAAAAGAAAAAAAAAAAAAGAAA
Found at i:14658443 original size:42 final size:42
Alignment explanation
Indices: 14658383--14658577 Score: 277
Period size: 41 Copynumber: 4.6 Consensus size: 42
14658373 ATGATTGTCA
* *
14658383 AGGAGTAATTTACTTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-ATTTTCAAAAGTCGTGGTGCCTCTGTTTAG
14658426 AGGAGCAATTTAATTTTC-AAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAATTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* * *
14658467 AGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTAATTTTCAAAAGTCGTGGTGCCTCTGTTTAG
*
14658509 AGGAGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAATTTT-CAAAAGTCGTGGTGCCTCTGTTTAG
* **
14658552 AAGAGCAATTT-ATTTTTTAAAGTCGT
1 AGGAGCAATTTAATTTTCAAAAGTCGT
14658578 AGCAATTTAC
Statistics
Matches: 140, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
41 48 0.34
42 48 0.34
43 44 0.31
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTAATTTTCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:14658454 original size:41 final size:41
Alignment explanation
Indices: 14658383--14658577 Score: 291
Period size: 43 Copynumber: 4.6 Consensus size: 41
14658373 ATGATTGTCA
*
14658383 AGGAGTAATTTACTTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
14658426 AGGAGCAATTTAATTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
14658467 AGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
14658509 AGGAGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-C-AAAGTCGTGGTGCCTCTGTTTAG
* * *
14658552 AAGAGCAATTTATTTTTTAAAGTCGT
1 AGGAGCAATTTACTTTTCAAAGTCGT
14658578 AGCAATTTAC
Statistics
Matches: 142, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
41 47 0.33
42 47 0.33
43 48 0.34
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:14658618 original size:66 final size:66
Alignment explanation
Indices: 14658512--14658635 Score: 239
Period size: 66 Copynumber: 1.9 Consensus size: 66
14658502 TGTTTAGAGG
14658512 AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTTAAAGTCG
1 AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTTAAAGTCG
14658577 T
66 T
*
14658578 AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTT
1 AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTT
14658636 TTTAAAGTCG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (66 bp):
AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTTAAAGTCG
T
Found at i:14658653 original size:42 final size:41
Alignment explanation
Indices: 14658578--14658796 Score: 228
Period size: 42 Copynumber: 5.2 Consensus size: 41
14658568 TTAAAGTCGT
* * *
14658578 AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTATTTTTTC-AAAGTC-CGGTGCCTCTGTTTAGAGG
*
14658621 AGCAATTTATTTTTTTTTAAAGT-CGGTGCCTCTGTTTAGAGG
1 AGCAATTTA--TTTTTTCAAAGTCCGGTGCCTCTGTTTAGAGG
* * **
14658663 AGCAA-TTACTTCTTTCCAAGTTGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTA-TTTTTTCAAAG-TCCGGTGCCTCTGTTTAGAGG
* *
14658705 AGCCAATTTATTTTTTCAAAGTCCGTTGCCTCTATTTAGAGG
1 AG-CAATTTATTTTTTCAAAGTCCGGTGCCTCTGTTTAGAGG
* **
14658747 AGCAATTTA-CTTTTCAAAGTCATGTGCCTCTGTTTAGAGGG
1 AGCAATTTATTTTTTCAAAGTCCGGTGCCTCTGTTTAGA-GG
14658788 AGCAATTTA
1 AGCAATTTA
14658797 CTTTCCAAAA
Statistics
Matches: 149, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
40 32 0.21
41 22 0.15
42 62 0.42
43 21 0.14
44 8 0.05
45 4 0.03
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (41 bp):
AGCAATTTATTTTTTCAAAGTCCGGTGCCTCTGTTTAGAGG
Found at i:14658718 original size:151 final size:148
Alignment explanation
Indices: 14658429--14658727 Score: 426
Period size: 151 Copynumber: 2.0 Consensus size: 148
14658419 TGTTTAGAGG
14658429 AGCAATTTAATTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGT
1 AGCAATTTAATTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCG-
14658494 GGTACCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAAGAGCA
65 GGTACCTCTGTTTAGAGGAGCAATTTACTTTTCC-AAAGTCGTGGTGCCTCTGTTTAGAAGAGCA
14658559 ATTTATTTTTT-AAAGTCGT
129 ATTTATTTTTTCAAAGTCGT
* * **
14658578 AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTTTTTAAAG
1 AGCAATTTAATTTT-C-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA--CTTTTCCAAAG
* * *
14658643 TC-GGTGCCTCTGTTTAGAGGAGCAA-TTACTTCTTTCC-AAGTTGTGGTGCCTCTGTTTAGAGG
62 TCGGGTACCTCTGTTTAGAGGAGCAATTTAC-T-TTTCCAAAGTCGTGGTGCCTCTGTTTAGAAG
14658705 AGCCAATTTATTTTTTCAAAGTC
125 AG-CAATTTATTTTTTCAAAGTC
14658728 CGTTGCCTCT
Statistics
Matches: 135, Mismatches: 7, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
149 13 0.10
150 30 0.22
151 71 0.53
152 11 0.08
153 10 0.07
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (148 bp):
AGCAATTTAATTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGG
GTACCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAAGAGCAAT
TTATTTTTTCAAAGTCGT
Found at i:14658720 original size:84 final size:83
Alignment explanation
Indices: 14658578--14658796 Score: 293
Period size: 84 Copynumber: 2.6 Consensus size: 83
14658568 TTAAAGTCGT
*
14658578 AGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTTTTTAAAG
1 AGCAATTTACTTTT-C-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTTTTCAAAG
*
14658643 T-CGGTGCCTCTGTTTAGAGG
63 TCCGGTGCCTCTATTTAGAGG
* *
14658663 AGCAA-TTACTTCTTTCCAAGTTGTGGTGCCTCTGTTTAGAGGAGCCAATTTA-TTTTTTCAAAG
1 AGCAATTTAC-T-TTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAG-CAATTTATTTTTTTCAAAG
*
14658726 TCCGTTGCCTCTATTTAGAGG
63 TCCGGTGCCTCTATTTAGAGG
*
14658747 AGCAATTTACTTTTCAAAGTCAT-GTGCCTCTGTTTAGAGGGAGCAATTTA
1 AGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGA-GGAGCAATTTA
14658797 CTTTCCAAAA
Statistics
Matches: 120, Mismatches: 8, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
82 22 0.18
83 24 0.20
84 53 0.44
85 18 0.15
86 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (83 bp):
AGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTTTCAAAGTCC
GGTGCCTCTATTTAGAGG
Found at i:14658737 original size:192 final size:190
Alignment explanation
Indices: 14658389--14658767 Score: 543
Period size: 192 Copynumber: 2.0 Consensus size: 190
14658379 GTCAAGGAGT
*
14658389 AATTTACTTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTCAAAGTCGTGG
1 AATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTCAAAGTCG-GG
14658454 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATT
65 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATT
* * *
14658519 TACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTTAAAGTCGTAGC
130 TACTTTTCCAAAAGTCGT-GTGCCTCTATTTAGAAGAGCAATTTACTTTTCAAAGTCGTAGC
* *
14658581 AATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTTTTTAAAGTC-
1 AATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA---ATTTTCAAAGTCG
* *
14658645 GGTGCCTCTGTTTAGAGGAGCAA-TTACTTCTTTCC-AAGTTGTGGTGCCTCTGTTTAGAGGAGC
63 GGTGCCTCTGTTTAGAGGAGCAATTTAC-T-TTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAG-
* * *
14658708 CAATTTATTTTTTC-AAAGTCCGT-TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTC
125 CAATTTACTTTTCCAAAAGT-CGTGTGCCTCTATTTAGAAGAGCAATTTACTTTTCAAAGTC
14658768 ATGTGCCTCT
Statistics
Matches: 169, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
192 85 0.50
193 54 0.32
194 20 0.12
195 10 0.06
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.39
Consensus pattern (190 bp):
AATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTCAAAGTCGGGT
GCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTT
ACTTTTCCAAAAGTCGTGTGCCTCTATTTAGAAGAGCAATTTACTTTTCAAAGTCGTAGC
Found at i:14658889 original size:17 final size:16
Alignment explanation
Indices: 14658867--14658901 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
14658857 GAGAATTTTG
14658867 AAAAAAAAACAAAATAA
1 AAAAAAAAACAAAA-AA
14658884 AAAAAAAAACAAAAAA
1 AAAAAAAAACAAAAAA
14658900 AA
1 AA
14658902 TACCTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.91, C:0.06, G:0.00, T:0.03
Consensus pattern (16 bp):
AAAAAAAAACAAAAAA
Found at i:14659225 original size:20 final size:19
Alignment explanation
Indices: 14659174--14659236 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
14659164 TTTTTCTTCA
14659174 TTTTTTATTTTA-AATTTT
1 TTTTTTATTTTATAATTTT
* *
14659192 TTATTTCATATTTATCATTTT
1 TT-TTTTAT-TTTATAATTTT
*
14659213 TATTTTTATTTTATGATTTAT
1 T-TTTTTATTTTATAATTT-T
14659234 TTT
1 TTT
14659237 CTTTTCCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
18 2 0.06
19 5 0.14
20 15 0.42
21 13 0.36
22 1 0.03
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTTTATTTTATAATTTT
Found at i:14659451 original size:18 final size:18
Alignment explanation
Indices: 14659428--14659467 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14659418 AAAAAAAGAT
*
14659428 AGAGGAGGAATCTGAATA
1 AGAGGAGGAATCCGAATA
*
14659446 AGAGGAGGAGTCCGAATA
1 AGAGGAGGAATCCGAATA
14659464 AGAG
1 AGAG
14659468 AGAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.38, T:0.12
Consensus pattern (18 bp):
AGAGGAGGAATCCGAATA
Found at i:14661990 original size:59 final size:59
Alignment explanation
Indices: 14661903--14662362 Score: 562
Period size: 59 Copynumber: 7.8 Consensus size: 59
14661893 AGATAAAAAG
* *
14661903 ATTTTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAA
1 ATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAA
14661962 AGTTTTC-AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAA-TTTTCTTTGAAAATCAAA
1 A-TTTTCAAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTTC-TTGAAAAT-AAA
* * * *
14662022 GTTTTCAAAAAAATATTTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
1 ATTTTCAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAA
* *
14662081 A-TTTCGAAAAAAATGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAA
1 ATTTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAA
* * * *
14662141 ATTTTC-AAAAAATATTTTTGGGGAAAAATTGAAAGTATCAATTTTCCTTAAAAAT-AA
1 ATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAA
*** * *
14662198 ATTTTCTAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAATCAA
1 ATTTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAA
* * *
14662258 AGTTTCAAAAAAAATATATTTTGAGGAAAAGTTGGAAGTATCAA-TTTTCTTTAAAA-ATAA
1 ATTTTC-AAAAAAATAT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATA-AA
14662318 ATTTTC-AAAAAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTT
1 ATTTTCAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTT
14662363 CCCTACACAA
Statistics
Matches: 350, Mismatches: 33, Indels: 36
0.84 0.08 0.09
Matches are distributed among these distances:
57 8 0.02
58 49 0.14
59 178 0.51
60 75 0.21
61 40 0.11
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.36
Consensus pattern (59 bp):
ATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAA
Found at i:14662057 original size:119 final size:121
Alignment explanation
Indices: 14661899--14662362 Score: 614
Period size: 119 Copynumber: 3.9 Consensus size: 121
14661889 TTGAAGATAA
* * * **
14661899 AAAGATTTTAAAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAA
1 AAAG-TTTTCAAAAAAATATTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA
*
14661963 GTTTTC-AAAAAATATTTTTGGA-GAAAAGTTGAAAGTATCAATTTTCTTTGAAAATC
65 -TTTTCGAAAAAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATC
14662019 AAAGTTTTCAAAAAAATATTTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA-
1 AAAGTTTTCAAAAAAATATTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAAT
*
14662082 TTTCGAAAAAA-ATGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
66 TTTCGAAAAAATAT-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATC
* * *
14662138 AAAATTTTC-AAAAAATATTTTTGGGGAAAAA-TTGAAAGTATCAATTTTCCTTAAAAAT-AAAT
1 AAAGTTTTCAAAAAAATATTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAAT
* ** *
14662200 TTTCTAAAAAGGGA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTT-TCTTGGAAATC
66 TTTCGAAAAA-ATATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCT-TTGAAAATC
* * * *
14662256 AAAG-TTTCAAAAAAAATATATTTTGAGGAAAAGTTGGAAGTATCAATTTTCTTTAAAAAT-AAA
1 AAAGTTTTC-AAAAAAATATTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA
14662319 TTTTC-AAAAAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTT
65 TTTTCGAAAAAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTT
14662363 CCCTACACAA
Statistics
Matches: 309, Mismatches: 22, Indels: 27
0.86 0.06 0.08
Matches are distributed among these distances:
117 13 0.04
118 105 0.34
119 147 0.48
120 44 0.14
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.36
Consensus pattern (121 bp):
AAAGTTTTCAAAAAAATATTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAAT
TTTCGAAAAAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATC
Found at i:14662271 original size:178 final size:177
Alignment explanation
Indices: 14661899--14662362 Score: 639
Period size: 178 Copynumber: 2.6 Consensus size: 177
14661889 TTGAAGATAA
* * *
14661899 AAAGATTTTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAG
1 AAAG-TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA-
* * *
14661964 TTTTCAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATCAAAGTTTTCA
64 TTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTCA
*
14662029 AAAAAATATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
129 AAAAAAGATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * *
14662078 AAAATTTCGAAAAAAATGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAAT
1 AAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAAT
*
14662143 TTTCAAAAAATATTTTTGGGGAAAAATTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTCTA
65 TTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC-A
** * * **
14662206 AAAAGGGA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGGAAAT
129 AAAAAAGATTTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * *
14662255 CAAAGTTTCAAAAAAAATATATTTTGAGGAAAAGTTGGAAGTATCAATTTTCTTTAAAAAT-AAA
1 -AAAGTTTCAAAAAAAATAT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAA
*
14662319 TTTTCAAAAAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTT
64 TTTTCAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTT
14662363 CCCTACACAA
Statistics
Matches: 254, Mismatches: 25, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
176 11 0.04
177 55 0.22
178 144 0.57
179 44 0.17
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.36
Consensus pattern (177 bp):
AAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATT
TTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTCAAA
AAAAGATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:14664535 original size:18 final size:18
Alignment explanation
Indices: 14664487--14664537 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
14664477 TTATTTTTTA
**
14664487 ATTTATATGTAAAATTTTT
1 ATTTATAT-TAAAAAATTT
*
14664506 ATTT-TAAATAAAAAATTT
1 ATTTAT-ATTAAAAAATTT
14664524 ATTTATATTAAAAA
1 ATTTATATTAAAAA
14664538 TTATAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATTTATATTAAAAAATTT
Found at i:14669414 original size:2 final size:2
Alignment explanation
Indices: 14669407--14669436 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14669397 ATTATGCCAA
14669407 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14669437 TGCCATTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14674416 original size:22 final size:22
Alignment explanation
Indices: 14674391--14674433 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14674381 CTGTATATTA
*
14674391 TATTTGTATCTCTAAAATTAAG
1 TATTTGTATCCCTAAAATTAAG
14674413 TATTTGTATCCCTAAAATTAA
1 TATTTGTATCCCTAAAATTAA
14674434 AGACAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:14681368 original size:28 final size:26
Alignment explanation
Indices: 14681320--14681371 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
14681310 CTTATTCATA
*
14681320 AAAAAAATAAATTTTATTTTAATTTG
1 AAAAAAATAAATTTTAATTTAATTTG
*
14681346 AAAAAAATTAATTAATTAATTTAATT
1 AAAAAAATAAATT--TTAATTTAATT
14681372 ATTTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
28 10 0.45
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (26 bp):
AAAAAAATAAATTTTAATTTAATTTG
Found at i:14683809 original size:24 final size:24
Alignment explanation
Indices: 14683776--14683823 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
14683766 TCCTTTGTTG
14683776 TTTTACTTTTTACTG-TTTTATAATA
1 TTTTACTTTTTA--GATTTTATAATA
14683801 TTTT-CTTTTTAGATTTTATAATA
1 TTTTACTTTTTAGATTTTATAATA
14683824 AATGAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 1 0.05
23 10 0.45
24 7 0.32
25 4 0.18
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTACTTTTTAGATTTTATAATA
Found at i:14684987 original size:13 final size:13
Alignment explanation
Indices: 14684969--14684996 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14684959 ATAATTATTC
14684969 ACCAAATATAGCT
1 ACCAAATATAGCT
14684982 ACCAAATATAGCT
1 ACCAAATATAGCT
14684995 AC
1 AC
14684997 TACAATTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.21
Consensus pattern (13 bp):
ACCAAATATAGCT
Found at i:14696964 original size:15 final size:15
Alignment explanation
Indices: 14696935--14696978 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
14696925 GAATTATAAG
14696935 TATTAAA-TTTTAAA
1 TATTAAATTTTTAAA
14696949 T-TTAAATTTATTAAA
1 TATTAAATTT-TTAAA
*
14696964 TATTATATTTTTAAA
1 TATTAAATTTTTAAA
14696979 ATGATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.19
14 3 0.12
15 11 0.42
16 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTAAATTTTTAAA
Found at i:14708279 original size:52 final size:52
Alignment explanation
Indices: 14708193--14708349 Score: 235
Period size: 52 Copynumber: 3.0 Consensus size: 52
14708183 TATAACCATA
* * *
14708193 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTTTTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
* *
14708245 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
* *
14708297 CAAACTTACCTATTAAGAATCCTCTTT-CTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-CTTTCCTCTTAGAATTCTTCTTTTGCAAGT
14708349 C
1 C
14708350 TTCTTGTCCA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
52 91 0.96
53 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
Found at i:14708390 original size:11 final size:11
Alignment explanation
Indices: 14708374--14708414 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
14708364 GCAATATCTG
*
14708374 ACAAATCCCAA
1 ACAAATCTCAA
*
14708385 ACAAATCTCTA
1 ACAAATCTCAA
*
14708396 ACAAATTTCAA
1 ACAAATCTCAA
14708407 ACAAATCT
1 ACAAATCT
14708415 TTTATGAGAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:14708708 original size:24 final size:25
Alignment explanation
Indices: 14708663--14708736 Score: 98
Period size: 24 Copynumber: 3.0 Consensus size: 25
14708653 ATGCACTTCC
14708663 CAAACCTTT-AGCTCTTTCCACATCT
1 CAAA-CTTTCAGCTCTTTCCACATCT
14708688 CAAACTTTCAGCTCTTT-CACATCT
1 CAAACTTTCAGCTCTTTCCACATCT
* * *
14708712 CGAACCTTCGGCTCTTTCCACATCT
1 CAAACTTTCAGCTCTTTCCACATCT
14708737 TGAATCTTCG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
24 25 0.57
25 19 0.43
ACGTcount: A:0.22, C:0.36, G:0.07, T:0.35
Consensus pattern (25 bp):
CAAACTTTCAGCTCTTTCCACATCT
Found at i:14708752 original size:49 final size:50
Alignment explanation
Indices: 14708665--14708776 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 50
14708655 GCACTTCCCA
*
14708665 AACCTTTAGCTCTTTCCACATCTCAAACTTTCAGCTCTT-TCACATCTCG
1 AACCTTCAGCTCTTTCCACATCTCAAACTTTCAGCTCTTCTCACATCTCG
* ** * *
14708714 AACCTTCGGCTCTTTCCACATCTTGAA-TCTTC-GACTCTTCTCACGTTTCG
1 AACCTTCAGCTCTTTCCACATCTCAAACT-TTCAG-CTCTTCTCACATCTCG
14708764 AACCTTCAGCTCT
1 AACCTTCAGCTCT
14708777 GATACCACTT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
48 2 0.04
49 31 0.58
50 20 0.38
ACGTcount: A:0.20, C:0.35, G:0.09, T:0.37
Consensus pattern (50 bp):
AACCTTCAGCTCTTTCCACATCTCAAACTTTCAGCTCTTCTCACATCTCG
Done.