Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 61 of 113
Found at i:14914002 original size:11 final size:10
Alignment explanation
Indices: 14913948--14914003 Score: 53
Period size: 10 Copynumber: 5.5 Consensus size: 10
14913938 AAAAGTGAAA
*
14913948 ATAAATAAAG
1 ATAAAAAAAG
14913958 ATAAAAAAA-
1 ATAAAAAAAG
14913967 ATAAAGAAAAG
1 ATAAA-AAAAG
*
14913978 -TAAAACAAAA
1 ATAAAA-AAAG
14913988 ATAAAAATAAG
1 ATAAAAA-AAG
14913999 ATAAA
1 ATAAA
14914004 GATAAAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
9 6 0.16
10 20 0.53
11 12 0.32
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (10 bp):
ATAAAAAAAG
Found at i:14914432 original size:20 final size:19
Alignment explanation
Indices: 14914381--14914433 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
14914371 ACTCCGGTTG
*
14914381 AATTTCGTCGGATTCTGGA
1 AATTTCGTCGGAATCTGGA
**
14914400 AATTGTCACCGGAATCTGGAA
1 AATT-TCGTCGGAATCTGG-A
14914421 AATTTCGTCGGAA
1 AATTTCGTCGGAA
14914434 GTTGGCCGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 4 0.15
20 18 0.67
21 5 0.19
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (19 bp):
AATTTCGTCGGAATCTGGA
Found at i:14915037 original size:4 final size:4
Alignment explanation
Indices: 14915028--14915118 Score: 51
Period size: 4 Copynumber: 20.5 Consensus size: 4
14915018 AAAAAAGAAT
*
14915028 AATA AATA AATTA TAATA TAAT- AATA AATA TAACTA TATA AATAA AATA
1 AATA AATA AA-TA -AATA -AATA AATA AATA -AA-TA AATA AAT-A AATA
*
14915077 CATATA AATA TTAACA ACA-A AATA AATA AATA AATA AATA AA
1 -A-ATA AATA --AATA A-ATA AATA AATA AATA AATA AATA AA
14915119 GATATACATA
Statistics
Matches: 72, Mismatches: 3, Indels: 24
0.73 0.03 0.24
Matches are distributed among these distances:
3 4 0.06
4 40 0.56
5 18 0.25
6 10 0.14
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (4 bp):
AATA
Found at i:14915059 original size:17 final size:18
Alignment explanation
Indices: 14915026--14915083 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 18
14915016 GAAAAAAAGA
14915026 ATAATAAATAAATTATAAT
1 ATAATAAATAAA-TATAAT
14915045 ATAAT-AATAAATATAACT
1 ATAATAAATAAATATAA-T
14915063 AT-ATAAATAAA-ATACAT
1 ATAATAAATAAATATA-AT
14915080 ATAA
1 ATAA
14915084 ATATTAACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
17 13 0.37
18 17 0.49
19 5 0.14
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
ATAATAAATAAATATAAT
Found at i:14915070 original size:14 final size:12
Alignment explanation
Indices: 14915025--14915163 Score: 55
Period size: 12 Copynumber: 11.8 Consensus size: 12
14915015 AGAAAAAAAG
14915025 AATAATAAATA-
1 AATAATAAATAT
*
14915036 AATTAT-AATAT
1 AATAATAAATAT
14915047 AATAATAAATAT
1 AATAATAAATAT
14915059 AACT-ATATAA-AT
1 AA-TAATA-AATAT
*
14915071 AA-AATACATAT
1 AATAATAAATAT
* *
14915082 AAATATTAACA-AC
1 -AATAATAA-ATAT
14915095 AA-AATAAATA-
1 AATAATAAATAT
14915105 AATAAATAAATA-
1 AAT-AATAAATAT
* *
14915117 AAGATATACATAT
1 AATA-ATAAATAT
* *
14915130 ATTAATACATAAT
1 AATAATAAAT-AT
*
14915143 AATAAT-AATAA
1 AATAATAAATAT
14915154 AATACATAAA
1 AATA-ATAAA
14915164 ATACAAAAGA
Statistics
Matches: 97, Mismatches: 14, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
10 8 0.08
11 26 0.27
12 44 0.45
13 18 0.19
14 1 0.01
ACGTcount: A:0.65, C:0.05, G:0.01, T:0.29
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:14915176 original size:21 final size:21
Alignment explanation
Indices: 14915133--14915176 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14915123 TACATATATT
* *
14915133 AATACATAATAATAATAATAA
1 AATACATAATAATAAAAAGAA
14915154 AATACATAA-AATACAAAAGAA
1 AATACATAATAATA-AAAAGAA
14915175 AA
1 AA
14915177 AAATTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.20
Consensus pattern (21 bp):
AATACATAATAATAAAAAGAA
Found at i:14915180 original size:81 final size:80
Alignment explanation
Indices: 14915012--14915189 Score: 179
Period size: 81 Copynumber: 2.2 Consensus size: 80
14915002 AAAAAATATT
* * *
14915012 ACAAGAAAA-AAAGAAT-AATAAATAAATTATAATATAATAATAAATATAACTATATAAATAAAA
1 ACAAAAAAATAAAAAATAAATAAATAAAATATAATATAATAATAAATATAACTATATAAATAAAA
**
14915075 TACATATAAATATTA
66 TACATATAAATAAAA
* * *
14915090 ACAACAAAATAAATAAATAAATAAATAAAGATATACATATATTAATACATAATAA-TA-AT-AAT
1 ACAAAAAAATAAA-AAATAAATAAATAAA-ATATA-ATATAATAATAAAT-ATAACTATATAAAT
14915152 AAAATACATA-AAATACAAA
62 AAAATACATATAAATA-AAA
* *
14915171 AGAAAAAAATTAAAAATAA
1 ACAAAAAAATAAAAAATAA
14915190 TACAAGATAC
Statistics
Matches: 83, Mismatches: 10, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
78 8 0.10
79 3 0.04
80 14 0.17
81 34 0.41
82 6 0.07
83 14 0.17
84 4 0.05
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.25
Consensus pattern (80 bp):
ACAAAAAAATAAAAAATAAATAAATAAAATATAATATAATAATAAATATAACTATATAAATAAAA
TACATATAAATAAAA
Found at i:14915367 original size:1 final size:1
Alignment explanation
Indices: 14915356--14915401 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
14915346 ACATTTGTCA
* ** *
14915356 TTTTTTGTTTTTTTTTGGTTTTTTTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14915402 ACCAAAAGCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:14915382 original size:16 final size:15
Alignment explanation
Indices: 14915357--14915401 Score: 72
Period size: 15 Copynumber: 2.9 Consensus size: 15
14915347 CATTTGTCAT
14915357 TTTTTGTTTTTTTTTGG
1 TTTTT-TTTTTTTTT-G
14915374 TTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTG
14915389 TTTTTTTTTTTTT
1 TTTTTTTTTTTTT
14915402 ACCAAAAGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 14 0.50
16 9 0.32
17 5 0.18
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:14915464 original size:40 final size:40
Alignment explanation
Indices: 14915409--14915577 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
14915399 TTTACCAAAA
* *
14915409 GCTCCTCTAAACAGAGGCTCAATGACTTTTG-AAATAAATT
1 GCTCCTCTAAACAGAGGCACAATAAC-TTTGAAAATAAATT
** * * *
14915449 GCTCCTCTAAACAGAGGCCACCACGACCTTTGGAAGT-AATT
1 GCTCCTCTAAACAGAGG-CA-CAATAACTTTGAAAATAAATT
*
14915490 GCTGCCTCTAAACAGAGGCACCATAACTTTGAAAAATAAA-T
1 GCT-CCTCTAAACAGAGGCACAATAACTTTG-AAAATAAATT
* *
14915531 GCTCTTCTAAACAGAGGCACCATAACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACAATAACTTTG-AAAATAAATT
14915572 GCTCCT
1 GCTCCT
14915578 TGACAATTAT
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
40 59 0.55
41 27 0.25
42 22 0.20
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (40 bp):
GCTCCTCTAAACAGAGGCACAATAACTTTGAAAATAAATT
Found at i:14915572 original size:82 final size:82
Alignment explanation
Indices: 14915412--14915574 Score: 190
Period size: 82 Copynumber: 2.0 Consensus size: 82
14915402 ACCAAAAGCT
* * *
14915412 CCTCTAAACAGAGGCTCAATGACTTTTGAAATAAATTGCTCCTCTAAACAGAGGCCACCACGACC
1 CCTCTAAACAGAGGCACAATAACTTTTGAAATAAATTGCTCCTCTAAACAGAGGCCACCACGAAC
* *
14915477 TTTGGAAGTAATTGCTG
66 TTTGAAAATAATTGCTG
* * *
14915494 CCTCTAAACAGAGGCACCATAAC-TTTGAAAAATAAA-TGCTCTTCTAAACAGAGG-CACCA-TA
1 CCTCTAAACAGAGGCACAATAACTTTTG--AAATAAATTGCTCCTCTAAACAGAGGCCACCACGA
14915555 ACTTTGAAAAATAAATTGCT
64 ACTTTG-AAAAT-AATTGCT
14915575 CCTTGACAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
80 6 0.09
81 12 0.17
82 44 0.64
83 7 0.10
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (82 bp):
CCTCTAAACAGAGGCACAATAACTTTTGAAATAAATTGCTCCTCTAAACAGAGGCCACCACGAAC
TTTGAAAATAATTGCTG
Found at i:14917237 original size:101 final size:95
Alignment explanation
Indices: 14917166--14917361 Score: 227
Period size: 95 Copynumber: 2.1 Consensus size: 95
14917156 AAATAATTTA
* *
14917166 ATTTTCACAAAAATTTATT-TG-AAATTCTCTAATAATTTAGTAGAATCCATAATTTAAAATTAA
1 ATTTT-AC-AAAATTCATTATGAAAATTCTC-AATAATTCAGTAGAATCCATAATTTAAAATTAA
*
14917229 AATTCTCCAATCATTTAGTAGGAAAAAAAAACT
63 AATTCTCCAATCATTTAGTAGAAAAAAAAAACT
* * ** *
14917262 ATTTTTCAAAATTCATTATGAAAATTTTCAATCGTTCAGTAGAATTCATAATTTAAAATTAAAAT
1 ATTTTACAAAATTCATTATGAAAATTCTCAATAATTCAGTAGAATCCATAATTTAAAATTAAAAT
* ** *
14917327 CCTCCAATTGTTTAGTA-AGAAAAAAAGACT
66 TCTCCAATCATTTAGTAGA-AAAAAAAAACT
14917357 ATTTT
1 ATTTT
14917362 TAAAATTTTT
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
94 9 0.11
95 64 0.75
96 12 0.14
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (95 bp):
ATTTTACAAAATTCATTATGAAAATTCTCAATAATTCAGTAGAATCCATAATTTAAAATTAAAAT
TCTCCAATCATTTAGTAGAAAAAAAAAACT
Found at i:14921981 original size:56 final size:56
Alignment explanation
Indices: 14921853--14922022 Score: 195
Period size: 53 Copynumber: 3.1 Consensus size: 56
14921843 AAAAATGAAG
* * * ** *
14921853 GAGAAATTGATGGGGTAAAATGTCAATGTGTTCCACAAAAAAAAAAG-TAAAAAAA
1 GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCACCCAAAAAAAAGAAAAAAAAA
* * *
14921908 -A-AAATTGATAGGACAAAATACCAATGTGCTCCACCCAAAAAAAAGAAAAAAAAA
1 GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCACCCAAAAAAAAGAAAAAAAAA
* * * *
14921962 GAGAAATTGATGGGGCAAAATGCCAATATACTCCA-CCAAAAAAAAGAGAGAAAAA
1 GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCACCCAAAAAAAAGAAAAAAAAA
14922017 GAGAAA
1 GAGAAA
14922023 AAAAAGAAAA
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 36 0.38
54 8 0.08
55 25 0.26
56 27 0.28
ACGTcount: A:0.55, C:0.12, G:0.18, T:0.15
Consensus pattern (56 bp):
GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCACCCAAAAAAAAGAAAAAAAAA
Found at i:14922003 original size:53 final size:53
Alignment explanation
Indices: 14921853--14922022 Score: 180
Period size: 56 Copynumber: 3.1 Consensus size: 53
14921843 AAAAATGAAG
* * *
14921853 GAGAAATTGATGGGGTAAAATGTCAATGTGTTCCA-CAAAAAAAAAAGTAAAAA
1 GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCACCAAAAAAAAAAG-AAAAA
* * * * * *
14921906 AAAAAATTGATAGGACAAAATACCAATGTGCTCCACCCAAAAAAAAGAAAAAAAAA
1 GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCA-CC-AAAAAAA-AAAGAAAAA
* *
14921962 GAGAAATTGATGGGGCAAAATGCCAATATACTCCACCAAAAAAAAGAGAGAAAAA
1 GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCACCAAAAAAAA-A-AGAAAAA
14922017 GAGAAA
1 GAGAAA
14922023 AAAAAGAAAA
Statistics
Matches: 94, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
53 28 0.30
54 8 0.09
55 15 0.16
56 40 0.43
57 3 0.03
ACGTcount: A:0.55, C:0.12, G:0.18, T:0.15
Consensus pattern (53 bp):
GAGAAATTGATGGGGCAAAATGCCAATGTGCTCCACCAAAAAAAAAAGAAAAA
Found at i:14922385 original size:21 final size:20
Alignment explanation
Indices: 14922353--14922406 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
14922343 AAAATTGTAA
*
14922353 AAAAATAAGACAAGCAAAAAT
1 AAAAA-AAGACAAGCAAAAAG
* *
14922374 AAGAAGAAGACAAGTAAAAAG
1 AA-AAAAAGACAAGCAAAAAG
14922395 AAAAAAAGACAA
1 AAAAAAAGACAA
14922407 AGGAGGAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 9 0.32
21 17 0.61
22 2 0.07
ACGTcount: A:0.72, C:0.07, G:0.15, T:0.06
Consensus pattern (20 bp):
AAAAAAAGACAAGCAAAAAG
Found at i:14923443 original size:114 final size:114
Alignment explanation
Indices: 14923276--14923483 Score: 272
Period size: 114 Copynumber: 1.8 Consensus size: 114
14923266 ACTGACTTAT
* * *
14923276 GACATCAGTCCGATCATTTACTTACAACCTTGACTCAATCTTAGCCGCCTTCAGACTTACAGTAT
1 GACATCAGTCCGATCATTTACCTACAACCTTGACTCAATCTTAGCCACCTTCAGACTCACAGTAT
*
14923341 CGTCCCAATCATCTGATCTCGACTTAGGTCAAATCATTTTTAGACTCAC
66 CGTCCCAATCATCTAATCTCGACTTAGGTCAAATCATTTTTAGACTCAC
* * ** * * ***
14923390 GACATTAGTCCGATCATTTACCTATAACCTTGACTCGGTCTTAGTCACTTTCAGACTCGTGGTAT
1 GACATCAGTCCGATCATTTACCTACAACCTTGACTCAATCTTAGCCACCTTCAGACTCACAGTAT
** *
14923455 CGTTTCAATCATCTAATCTTGACTTAGGT
66 CGTCCCAATCATCTAATCTCGACTTAGGT
14923484 TAGATCATCT
Statistics
Matches: 78, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
114 78 1.00
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.34
Consensus pattern (114 bp):
GACATCAGTCCGATCATTTACCTACAACCTTGACTCAATCTTAGCCACCTTCAGACTCACAGTAT
CGTCCCAATCATCTAATCTCGACTTAGGTCAAATCATTTTTAGACTCAC
Found at i:14923666 original size:178 final size:178
Alignment explanation
Indices: 14923343--14923678 Score: 399
Period size: 178 Copynumber: 1.9 Consensus size: 178
14923333 TACAGTATCG
* ** * *
14923343 TCCCAATCATCTGATCTCGACTTAGGTCAAATCATTTTTAGACTCACGACATTAGTCCGATCATT
1 TCCCAATCATCTGATCTCGACTCAGGTCAAATCAACTTCAGACTCACGACATTAGTCAGATCATT
* * * *
14923408 TACCTATAACCTTGACTCGGTCTTAGTCACTTTCAGACTCGTGGTATCGTTTCAATCATCTAATC
66 TACCTATAACCTTGACTCAGTCTTAGTCACTTTAAGACTCGTAGTATCGTCTCAATCATCTAATC
* **
14923473 TTGACTTAGGTTAGATCATCTTCAGACTTTTTTAAACTAGCGGCATCA
131 TCGACCCAGGTTAGATCATCTTCAGACTTTTTTAAACTAGCGGCATCA
* * * ** *
14923521 TCCCAATCATCTGATCTTGACTCAGGTTAGATCAACTTCAGACTCGTGGCATTAGTCTAG-TCAT
1 TCCCAATCATCTGATCTCGACTCAGGTCAAATCAACTTCAGACTCACGACATTAGTC-AGATCAT
* * * * *
14923585 TTACCTA-AGACCTTGACTCAGTTTTGGTCACTTTAAGACTTGTAGTATCGTC-CTAATCATTTG
65 TTACCTATA-ACCTTGACTCAGTCTTAGTCACTTTAAGACTCGTAGTATCGTCTC-AATCATCTA
* *
14923648 ATCTCGACCCATGTTAGATTATCTTCAGACT
128 ATCTCGACCCAGGTTAGATCATCTTCAGACT
14923679 CACAGCATCA
Statistics
Matches: 130, Mismatches: 25, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
177 2 0.02
178 127 0.98
179 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (178 bp):
TCCCAATCATCTGATCTCGACTCAGGTCAAATCAACTTCAGACTCACGACATTAGTCAGATCATT
TACCTATAACCTTGACTCAGTCTTAGTCACTTTAAGACTCGTAGTATCGTCTCAATCATCTAATC
TCGACCCAGGTTAGATCATCTTCAGACTTTTTTAAACTAGCGGCATCA
Found at i:14923874 original size:60 final size:60
Alignment explanation
Indices: 14923793--14923921 Score: 152
Period size: 60 Copynumber: 2.1 Consensus size: 60
14923783 TTTTTAGACA
* * * * * *
14923793 CGCGACATCAGT-CTGATCATTTATCTATGACCTTGACTTGATCTTAGTCACCTTCAGACT
1 CGCGACATCAGTCCT-CTCATTTACCTACGACCTTGAATCGATCTTAGTCACCTTCAAACT
* * * *
14923853 CGCGGCATCAGTCCTCTCATTTACCTACGACCTTGAATCGATCTTGGTCATCTTTAAACT
1 CGCGACATCAGTCCTCTCATTTACCTACGACCTTGAATCGATCTTAGTCACCTTCAAACT
14923913 CGCGACATC
1 CGCGACATC
14923922 GTCTCAGTCA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
60 55 0.96
61 2 0.04
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (60 bp):
CGCGACATCAGTCCTCTCATTTACCTACGACCTTGAATCGATCTTAGTCACCTTCAAACT
Found at i:14923909 original size:174 final size:174
Alignment explanation
Indices: 14923670--14924004 Score: 408
Period size: 174 Copynumber: 1.9 Consensus size: 174
14923660 GTTAGATTAT
* *
14923670 CTTCAGACTCACAGCATCAGTCCGATCATTTAACTATAACCTTAACTACATCTTAGTCGTCTTTA
1 CTTCAGACTCACAGCATCAGTCCGATCATTTAACTACAACCTTAACTACATCTTAGTCATCTTTA
* * * *
14923735 AACTCGCCACATCGTCTTAGTCATCTAATCTAGACTCAAGTCAGATCATTTTTAGACACGCGAC-
66 AACTCGCCACATCGTCTCAGTCATCTAATATAGACTCAAATCAGATCATCTTTAGACACGCGACA
*
14923799 ATCAGTCTGATCATTTA-TCTATGACCTTGACTTGATCTTAGTCAC
131 ATCAGT-TGATCATTTACT-TACGACCTTGACTTGATCTTAGTCAC
* * ** * * *
14923844 CTTCAGACTCGCGGCATCAGTCCTCTCATTTACCTACGACCTTGAA-T-CGATCTTGGTCATCTT
1 CTTCAGACTCACAGCATCAGTCCGATCATTTAACTACAACCTT-AACTAC-ATCTTAGTCATCTT
* * * * * * *
14923907 TAAACTCGCGACATCGTCTCAGTCATCTGATATTGACTTAAATCAGATCATCTTTAGACTCGTGG
64 TAAACTCGCCACATCGTCTCAGTCATCTAATATAGACTCAAATCAGATCATCTTTAGACACGCGA
*
14923972 CAATCAGTTGGTCATTTACTTACGACCTTGACT
129 CAATCAGTTGATCATTTACTTACGACCTTGACT
14924005 CGATTTTGGT
Statistics
Matches: 135, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
173 1 0.01
174 125 0.93
175 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (174 bp):
CTTCAGACTCACAGCATCAGTCCGATCATTTAACTACAACCTTAACTACATCTTAGTCATCTTTA
AACTCGCCACATCGTCTCAGTCATCTAATATAGACTCAAATCAGATCATCTTTAGACACGCGACA
ATCAGTTGATCATTTACTTACGACCTTGACTTGATCTTAGTCAC
Found at i:14924456 original size:3 final size:3
Alignment explanation
Indices: 14924448--14924563 Score: 106
Period size: 3 Copynumber: 40.7 Consensus size: 3
14924438 TGTACACAGT
14924448 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TGT- TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA
** *
14924494 CACA GT- TTA TTA TTA TTA TTA TTA TT- TTA TT- TTA TT- TTA TT-
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
14924535 TTC TTA TTA TTA TT- TTA TT- TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14924564 TTCTTTCTTT
Statistics
Matches: 96, Mismatches: 6, Indels: 22
0.77 0.05 0.18
Matches are distributed among these distances:
2 15 0.16
3 79 0.82
4 2 0.02
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14924534 original size:52 final size:52
Alignment explanation
Indices: 14924415--14924533 Score: 208
Period size: 52 Copynumber: 2.3 Consensus size: 52
14924405 TTTATAGTAC
14924415 TATTATTATTATTATTATGATGTTGTACACAGTTTATTATTATTATTATTAT
1 TATTATTATTATTATTATGATGTTGTACACAGTTTATTATTATTATTATTAT
*
14924467 TATTATTATTATTATTATTATGTTGTACACAGTTTATTATTATTATTATTAT
1 TATTATTATTATTATTATGATGTTGTACACAGTTTATTATTATTATTATTAT
14924519 T-TTATT-TTATT-TTAT
1 TATTATTATTATTATTAT
14924534 TTTCTTATTA
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
49 4 0.06
50 5 0.08
51 5 0.08
52 52 0.79
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (52 bp):
TATTATTATTATTATTATGATGTTGTACACAGTTTATTATTATTATTATTAT
Found at i:14924549 original size:29 final size:29
Alignment explanation
Indices: 14924499--14924568 Score: 122
Period size: 29 Copynumber: 2.4 Consensus size: 29
14924489 TTGTACACAG
*
14924499 TTTATTATTATTATTATTATTTTATTTTAT
1 TTTATT-TTCTTATTATTATTTTATTTTAT
14924529 TTTATTTTCTTATTATTATTTTATTTTAT
1 TTTATTTTCTTATTATTATTTTATTTTAT
14924558 TTTATTTTCTT
1 TTTATTTTCTT
14924569 TCTTTTCTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 33 0.85
30 6 0.15
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (29 bp):
TTTATTTTCTTATTATTATTTTATTTTAT
Found at i:14924574 original size:24 final size:23
Alignment explanation
Indices: 14924499--14924574 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 23
14924489 TTGTACACAG
*
14924499 TTTATTATTATTATTATTATTTTAT
1 TTTATT-TTATT-TTATTTTTTTAT
* *
14924524 TTTATTTTATTTTCTTATTATTAT
1 TTTATTTTATTTTATT-TTTTTAT
*
14924548 TTTATTTTATTTTATTTTCTTTCT
1 TTTATTTTATTTTATTTT-TTTAT
14924572 TTT
1 TTT
14924575 CTTGTTTCGA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 6 0.14
24 31 0.72
25 6 0.14
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTATTTTATTTTATTTTTTTAT
Found at i:14924575 original size:38 final size:41
Alignment explanation
Indices: 14924448--14924577 Score: 122
Period size: 49 Copynumber: 3.0 Consensus size: 41
14924438 TGTACACAGT
*
14924448 TTATTATTATTATTATTATTATTATTATTATTATTATTATGTTGTAC
1 TTATTATTATTATTATTATTATT-TTATT-TTACT-TTAT-TT-T-C
** *
14924495 ACAGTTTATTATTATTATTATTATTTTATTTTATTTTATTTTC
1 TTA--TTATTATTATTATTATTATTTTATTTTACTTTATTTTC
*
14924538 TTATTATTATT-TTATT-TTATTTTATTTT-CTTTCTTTTC
1 TTATTATTATTATTATTATTATTTTATTTTACTTTATTTTC
14924576 TT
1 TT
14924578 GTTTCGAGTT
Statistics
Matches: 75, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
38 10 0.13
39 12 0.16
40 5 0.07
41 8 0.11
43 2 0.03
44 1 0.01
45 2 0.03
46 4 0.05
47 6 0.08
48 5 0.07
49 20 0.27
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (41 bp):
TTATTATTATTATTATTATTATTTTATTTTACTTTATTTTC
Found at i:14924577 original size:5 final size:5
Alignment explanation
Indices: 14924503--14924565 Score: 76
Period size: 5 Copynumber: 12.4 Consensus size: 5
14924493 ACACAGTTTA
*
14924503 TTATT ATTATT ATTATT TTATT TTATT TTA-T TT-TC TTATT ATTATT
1 TTATT -TTATT -TTATT TTATT TTATT TTATT TTATT TTATT -TTATT
14924549 TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TT
14924566 CTTTCTTTTC
Statistics
Matches: 52, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
4 5 0.10
5 31 0.60
6 16 0.31
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:14925589 original size:21 final size:21
Alignment explanation
Indices: 14925542--14925588 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
14925532 CTTTTTCTGG
*
14925542 AAAACAGAAGAAGCAAAGAAT
1 AAAAAAGAAGAAGCAAAGAAT
14925563 AAAAAAGAAG-AG-AAAGAAAT
1 AAAAAAGAAGAAGCAAAG-AAT
14925583 AAAAAA
1 AAAAAA
14925589 AACCATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 11 0.46
21 9 0.38
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.04
Consensus pattern (21 bp):
AAAAAAGAAGAAGCAAAGAAT
Found at i:14926526 original size:17 final size:18
Alignment explanation
Indices: 14926506--14926551 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
14926496 TCAACAAAAG
*
14926506 ATAAAACTCAA-AAATAA
1 ATAAAACTAAATAAATAA
14926523 ATAAAA-TAAATAAATAA
1 ATAAAACTAAATAAATAA
14926540 ATAAAACATAAA
1 ATAAAAC-TAAA
14926552 ATAATGGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 3 0.12
17 18 0.72
19 4 0.16
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (18 bp):
ATAAAACTAAATAAATAA
Found at i:14926530 original size:9 final size:9
Alignment explanation
Indices: 14926516--14926545 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14926506 ATAAAACTCA
14926516 AAAATAAAT
1 AAAATAAAT
14926525 AAAATAAAT
1 AAAATAAAT
14926534 -AAATAAAT
1 AAAATAAAT
14926542 AAAA
1 AAAA
14926546 CATAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAATAAAT
Found at i:14926553 original size:12 final size:13
Alignment explanation
Indices: 14926517--14926555 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
14926507 TAAAACTCAA
14926517 AAATAAATAAAAT
1 AAATAAATAAAAT
14926530 AAATAAAT-AAAT
1 AAATAAATAAAAT
*
14926542 AAA-ACATAAAAT
1 AAATAAATAAAAT
14926554 AA
1 AA
14926556 TGGATAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 3 0.12
12 13 0.54
13 8 0.33
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:14926868 original size:19 final size:20
Alignment explanation
Indices: 14926841--14926883 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
14926831 ATAATGCATA
* *
14926841 AAATTAAATTAA-AAATAAT
1 AAATAAAATTAACAAATAAC
14926860 AAATAAAATTAACAAATAAC
1 AAATAAAATTAACAAATAAC
14926880 AAAT
1 AAAT
14926884 TAACAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAAAATTAACAAATAAC
Found at i:14926885 original size:15 final size:15
Alignment explanation
Indices: 14926865--14926893 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14926855 ATAATAAATA
14926865 AAATTAACAAATAAC
1 AAATTAACAAATAAC
14926880 AAATTAACAAATAA
1 AAATTAACAAATAA
14926894 TGACAATCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATTAACAAATAAC
Found at i:14927295 original size:12 final size:12
Alignment explanation
Indices: 14927278--14927317 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
14927268 AAGATGCATG
14927278 AAAAAAA-AAAA
1 AAAAAAAGAAAA
14927289 AAAAAAAGAAAA
1 AAAAAAAGAAAA
**
14927301 AAATTAAGAAAA
1 AAAAAAAGAAAA
14927313 AAAAA
1 AAAAA
14927318 GGTAGTGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 7 0.29
12 17 0.71
ACGTcount: A:0.90, C:0.00, G:0.05, T:0.05
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:14930366 original size:24 final size:26
Alignment explanation
Indices: 14930334--14930395 Score: 83
Period size: 24 Copynumber: 2.4 Consensus size: 26
14930324 ACAATTTATA
*
14930334 TTATCATTTTTATTTATTTTTA-T-TT
1 TTAT-ATTTTTATTTATTATTACTATT
14930359 TTATATTTTTATTTATTATTACTATT
1 TTATATTTTTATTTATTATTACTATT
*
14930385 ATATATTTTTA
1 TTATATTTTTA
14930396 AGATTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 16 0.48
25 5 0.15
26 12 0.36
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (26 bp):
TTATATTTTTATTTATTATTACTATT
Found at i:14930559 original size:18 final size:17
Alignment explanation
Indices: 14930535--14930576 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
14930525 ATTATTTTTT
*
14930535 ATTATTGGTTATGATTA
1 ATTATTGGTAATGATTA
*
14930552 ATTTATTGGTAATTATTA
1 A-TTATTGGTAATGATTA
14930570 ATTATTG
1 ATTATTG
14930577 ATATTTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (17 bp):
ATTATTGGTAATGATTA
Found at i:14932093 original size:28 final size:28
Alignment explanation
Indices: 14932045--14932099 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
14932035 TTTTCTGAAA
14932045 ACTTATTTGAAAAGATTTTTT-TTTTTG
1 ACTTATTTGAAAAGATTTTTTCTTTTTG
14932072 ACTTATTTGAAAATG-TCTTTTTCTTTTT
1 ACTTATTTGAAAA-GAT-TTTTTCTTTTT
14932100 ATAATTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 14 0.56
28 6 0.24
29 5 0.20
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.60
Consensus pattern (28 bp):
ACTTATTTGAAAAGATTTTTTCTTTTTG
Found at i:14932214 original size:16 final size:16
Alignment explanation
Indices: 14932182--14932224 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
14932172 AAAAATAATA
14932182 AAAAATAAAA-AACCT
1 AAAAATAAAATAACCT
* *
14932197 AAAAATAAAATGAGCT
1 AAAAATAAAATAACCT
14932213 -AAAATAAAATAA
1 AAAAATAAAATAA
14932225 AATGAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 21 0.88
16 3 0.12
ACGTcount: A:0.72, C:0.07, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAACCT
Found at i:14932239 original size:39 final size:39
Alignment explanation
Indices: 14932173--14932248 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 39
14932163 TAAAACCAAA
14932173 AAAATAATAAAAAATAAAAAACCTAAAAATAAAATGAGCT
1 AAAATAATAAAAAATAAAAAA-CTAAAAATAAAATGAGCT
14932213 AAAATAA-AATAAAATGAAAAAA-TAAAAATAAAATGA
1 AAAATAATAA-AAAAT-AAAAAACTAAAAATAAAATGA
14932249 AAAAGGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
39 16 0.47
40 12 0.35
41 6 0.18
ACGTcount: A:0.74, C:0.04, G:0.05, T:0.17
Consensus pattern (39 bp):
AAAATAATAAAAAATAAAAAACTAAAAATAAAATGAGCT
Found at i:14932242 original size:19 final size:19
Alignment explanation
Indices: 14932171--14932252 Score: 89
Period size: 19 Copynumber: 4.3 Consensus size: 19
14932161 AATAAAACCA
*
14932171 AAAAAATAATAA-AAAAT-
1 AAAAAATAAAAATAAAATG
14932188 AAAAAACCTAAAAATAAAATG
1 AAAAAA--TAAAAATAAAATG
*
14932209 AGCTAAAAT-AAAATAAAATG
1 A--AAAAATAAAAATAAAATG
14932229 AAAAAATAAAAATAAAATG
1 AAAAAATAAAAATAAAATG
14932248 AAAAA
1 AAAAA
14932253 GGAAAACCTT
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
17 6 0.11
18 5 0.09
19 21 0.38
20 17 0.31
21 2 0.04
23 4 0.07
ACGTcount: A:0.76, C:0.04, G:0.05, T:0.16
Consensus pattern (19 bp):
AAAAAATAAAAATAAAATG
Found at i:14932258 original size:19 final size:19
Alignment explanation
Indices: 14932218--14932258 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
14932208 GAGCTAAAAT
*
14932218 AAAATAAAATGAAAAAATA
1 AAAATAAAATGAAAAAAGA
*
14932237 AAAATAAAATGAAAAAGGA
1 AAAATAAAATGAAAAAAGA
14932256 AAA
1 AAA
14932259 CCTTGTGATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (19 bp):
AAAATAAAATGAAAAAAGA
Found at i:14932584 original size:19 final size:20
Alignment explanation
Indices: 14932562--14932600 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14932552 AAAATTCATG
14932562 TTTTTTCTA-AAAA-CCTAGA
1 TTTTTT-TAGAAAATCCTAGA
14932581 TTTTTTTAGAAAATCCTAGA
1 TTTTTTTAGAAAATCCTAGA
14932601 AATTTCCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 10 0.56
20 6 0.33
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.44
Consensus pattern (20 bp):
TTTTTTTAGAAAATCCTAGA
Found at i:14933120 original size:3 final size:3
Alignment explanation
Indices: 14933114--14933170 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
14933104 GTAGTAAAGT
* * * *
14933114 ATA ATA ATA ATG ATA ATA AT- ATA ATAA ATA ATA ATG GTA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
*
14933159 GTA ATA ATA ATA
1 ATA ATA ATA ATA
14933171 CAATATACTA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14933131 original size:9 final size:9
Alignment explanation
Indices: 14933117--14933166 Score: 61
Period size: 9 Copynumber: 5.9 Consensus size: 9
14933107 GTAAAGTATA
14933117 ATAATAATG
1 ATAATAATG
14933126 ATAATAAT-
1 ATAATAATG
14933134 ATAATAA--
1 ATAATAATG
14933141 ATAATAATG
1 ATAATAATG
*
14933150 GTAATAATG
1 ATAATAATG
*
14933159 GTAATAAT
1 ATAATAAT
14933167 AATACAATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
7 7 0.18
8 7 0.18
9 24 0.63
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (9 bp):
ATAATAATG
Found at i:14933143 original size:24 final size:24
Alignment explanation
Indices: 14933114--14933170 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
14933104 GTAGTAAAGT
14933114 ATAATAATAATGATAATAAT-ATA
1 ATAATAATAATGATAATAATGATA
* *
14933137 ATAAATAATAATGGTAATAATGGTA
1 AT-AATAATAATGATAATAATGATA
14933162 ATAATAATA
1 ATAATAATA
14933171 CAATATACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 24 0.80
25 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (24 bp):
ATAATAATAATGATAATAATGATA
Found at i:14933200 original size:25 final size:26
Alignment explanation
Indices: 14933172--14933220 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
14933162 ATAATAATAC
*
14933172 AATATACTATATTATA-TAATATATT
1 AATATACTATACTATATTAATATATT
14933197 AATATACTATACTATATTAATATA
1 AATATACTATACTATATTAATATA
14933221 CTATGCTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (26 bp):
AATATACTATACTATATTAATATATT
Found at i:14933229 original size:18 final size:18
Alignment explanation
Indices: 14933186--14933230 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
14933176 TACTATATTA
*
14933186 TATAATATATTAATATAC
1 TATACTATATTAATATAC
14933204 TATACTATATTAATATAC
1 TATACTATATTAATATAC
*
14933222 TATGCTATA
1 TATACTATA
14933231 ATATAATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (18 bp):
TATACTATATTAATATAC
Found at i:14933234 original size:15 final size:15
Alignment explanation
Indices: 14933165--14933251 Score: 63
Period size: 15 Copynumber: 5.6 Consensus size: 15
14933155 AATGGTAATA
*
14933165 ATAATACAATATACTAT
1 ATAATATAATAT-C-AT
*
14933182 ATTATATAATAT-AT
1 ATAATATAATATCAT
*
14933196 -TAATATACTATACTAT
1 ATAATATAATAT-C-AT
*
14933212 ATTAATATACTATGC-T
1 A-TAATATAATAT-CAT
14933228 ATAATATAATATCAT
1 ATAATATAATATCAT
14933243 ATAATATAA
1 ATAATATAA
14933252 ATACACAAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
13 9 0.16
14 3 0.05
15 20 0.34
16 4 0.07
17 10 0.17
18 12 0.21
ACGTcount: A:0.49, C:0.08, G:0.01, T:0.41
Consensus pattern (15 bp):
ATAATATAATATCAT
Found at i:14933235 original size:5 final size:5
Alignment explanation
Indices: 14933160--14933251 Score: 57
Period size: 5 Copynumber: 18.6 Consensus size: 5
14933150 GTAATAATGG
* * *
14933160 TAATAA TAATA CAATA TACTATA TTATA TAATA T-AT- TAATA TACTA
1 TAAT-A TAATA TAATA TA--ATA TAATA TAATA TAATA TAATA TAATA
* * ** *
14933206 TACTA T-AT- TAATA TACTA TGCTA TAATA TAATA TCATA TAATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
14933252 ATACACAAAC
Statistics
Matches: 68, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
3 2 0.03
4 7 0.10
5 51 0.75
6 4 0.06
7 4 0.06
ACGTcount: A:0.50, C:0.08, G:0.01, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:14933605 original size:21 final size:21
Alignment explanation
Indices: 14933579--14933630 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
14933569 TCGAATGATC
14933579 AGGATAAAACCATGAGTCGAA
1 AGGATAAAACCATGAGTCGAA
14933600 AGGATAAAACCATGAGTCGAA
1 AGGATAAAACCATGAGTCGAA
**
14933621 AAAATAAAAC
1 AGGATAAAAC
14933631 AACCAGGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.54, C:0.13, G:0.19, T:0.13
Consensus pattern (21 bp):
AGGATAAAACCATGAGTCGAA
Found at i:14933972 original size:240 final size:241
Alignment explanation
Indices: 14933708--14934155 Score: 535
Period size: 240 Copynumber: 1.9 Consensus size: 241
14933698 GCCTAATCCA
* * *
14933708 AGATCGAATGACTAGGACGAAACTGTGAGTTTAAAGATAAAATGACCAGGACTGAGTCGAGGTAA
1 AGATCGAATGACTAGGACGAAACTGTGAGTCTAAAGATAAAACGACCAGGACTGAGTCGAGATAA
** * * * * * * * * *
14933773 AAAATGGTTAATTGGGATGGATCCATAAGTCAAGAAAATGATCTGGCTTG-AGTCGAGATCGAAT
66 AAAATGACTAATTGAGATAGAACCACAAGTCAAGAAAATAATCTGG-ATGAAATCAAAATCGAAT
* * ** * * *
14933837 GACCAAGATGAAACTACGAGTT-TA-AAGATAAAGTGACTAGGATCGAGTTGAGGTCAAAGATGG
130 GACCAAGATGAAACCACGA-TTCGATAAGATAAAGCAACCAGGATCGAGTTAAGGTCAAAAATGG
14933900 CTAACCGAAATGAAATTACGAGTCAAAAAAATGATCTAACCTGAGCTG
194 CTAACCGAAATGAAATTACGAGTCAAAAAAATGATCTAACCTGAGCTG
* * ** *
14933948 AGATCGAATGA-TCGGGATGAAACTGTGAGTCTAAAGATAAAACGATTAGGACTGAGTCGAGATT
1 AGATCGAATGACT-AGGACGAAACTGTGAGTCTAAAGATAAAACGACCAGGACTGAGTCGAGATA
* * * * *
14934012 GAAGATGACTGATTGAGATAGAACTACAAGTCAAGAAAATAATTTGGATGAAATCAAAATCGAAT
65 AAAAATGACTAATTGAGATAGAACCACAAGTCAAGAAAATAATCTGGATGAAATCAAAATCGAAT
* *
14934077 GACCAAGATGAAACCATGATTCGATAAGATAAAGCAACCAGGATTGAGTTAAGGTCAAAAATGGC
130 GACCAAGATGAAACCACGATTCGATAAGATAAAGCAACCAGGATCGAGTTAAGGTCAAAAATGGC
*
14934142 TAACCGAGATGAAA
195 TAACCGAAATGAAA
14934156 CCGTGAGTTA
Statistics
Matches: 170, Mismatches: 34, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
239 5 0.03
240 118 0.69
241 47 0.28
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (241 bp):
AGATCGAATGACTAGGACGAAACTGTGAGTCTAAAGATAAAACGACCAGGACTGAGTCGAGATAA
AAAATGACTAATTGAGATAGAACCACAAGTCAAGAAAATAATCTGGATGAAATCAAAATCGAATG
ACCAAGATGAAACCACGATTCGATAAGATAAAGCAACCAGGATCGAGTTAAGGTCAAAAATGGCT
AACCGAAATGAAATTACGAGTCAAAAAAATGATCTAACCTGAGCTG
Found at i:14936488 original size:6 final size:5
Alignment explanation
Indices: 14936474--14936599 Score: 56
Period size: 5 Copynumber: 23.0 Consensus size: 5
14936464 TATTTACTTA
* *
14936474 TTTATT TTTAAT TTTAT TTTAT TTTGT TTCTAT TTTAT TTTTT TATTAT
1 TTTA-T TTT-AT TTTAT TTTAT TTTAT TT-TAT TTTAT TTTAT T-TTAT
* * * * *
14936523 TTTTT GTTTATT ATTTAT TTT-T ATTAT TTACTAT TATAT TATAA TTTAT
1 TTTAT -TTTA-T -TTTAT TTTAT TTTAT TT--TAT TTTAT TTTAT TTTAT
* *
14936572 ATTAT TATTAT TTTTT TATTGAT TTTAT
1 TTTAT T-TTAT TTTAT T-TT-AT TTTAT
14936600 CTTTTCTTGA
Statistics
Matches: 92, Mismatches: 17, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
4 3 0.03
5 49 0.53
6 28 0.30
7 12 0.13
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (5 bp):
TTTAT
Found at i:14936517 original size:29 final size:28
Alignment explanation
Indices: 14936485--14936551 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
14936475 TTATTTTTAA
*
14936485 TTTTATTTTATTTTGTTT-CTATTTTATTT
1 TTTTATTTT-TTTTGTTTATTA-TTTATTT
14936514 TTTTATTATTTTTTGTTTATTATTTATTT
1 TTTTATT-TTTTTTGTTTATTATTTATTT
14936543 TTATTATTT
1 TT-TTATTT
14936552 ACTATTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 25 0.74
30 9 0.26
ACGTcount: A:0.16, C:0.01, G:0.03, T:0.79
Consensus pattern (28 bp):
TTTTATTTTTTTTGTTTATTATTTATTT
Found at i:14936541 original size:7 final size:7
Alignment explanation
Indices: 14936515--14936584 Score: 58
Period size: 7 Copynumber: 10.4 Consensus size: 7
14936505 ATTTTATTTT
14936515 TTTATTA
1 TTTATTA
* *
14936522 TTTTTTG
1 TTTATTA
14936529 TTTATTA
1 TTTATTA
14936536 TTTATT-
1 TTTATTA
14936542 TTTATTA
1 TTTATTA
*
14936549 TTTACTA
1 TTTATTA
14936556 TTATATTA
1 TT-TATTA
*
14936564 -TAATT-
1 TTTATTA
*
14936569 TATATTA
1 TTTATTA
14936576 -TTATTA
1 TTTATTA
14936582 TTT
1 TTT
14936585 TTTTATTGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
6 17 0.35
7 27 0.56
8 4 0.08
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (7 bp):
TTTATTA
Found at i:14936569 original size:27 final size:27
Alignment explanation
Indices: 14936463--14936577 Score: 74
Period size: 27 Copynumber: 4.2 Consensus size: 27
14936453 ATGGGTCCAT
* *
14936463 TTATTTACTTATTTATTTTTAATTTTATT
1 TTATTTAC-TATTTATTATTAATTTT-TA
** *
14936492 TTATTTTGT-TTCTATT-TTATTTTTTTA
1 TTATTTACTATT-TATTATTA-ATTTTTA
** * *
14936519 TTATTTTTTGTTTATTATTTATTTTTA
1 TTATTTACTATTTATTATTAATTTTTA
*
14936546 TTATTTACTATTATATTA-TAATTTATA
1 TTATTTACTATT-TATTATTAATTTTTA
14936573 TTATT
1 TTATT
14936578 ATTATTTTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
27 45 0.65
28 18 0.26
29 6 0.09
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (27 bp):
TTATTTACTATTTATTATTAATTTTTA
Found at i:14936599 original size:17 final size:16
Alignment explanation
Indices: 14936461--14936604 Score: 80
Period size: 16 Copynumber: 8.4 Consensus size: 16
14936451 AGATGGGTCC
*
14936461 ATTTATTTACTTA-TTT
1 ATTTTTTTA-TTATTTT
14936477 ATTTTTAATT-TTATTTT
1 ATTTTT--TTATTATTTT
*
14936494 ATTTTGTTT-CTATTTT
1 ATTTT-TTTATTATTTT
14936510 ATTTTTTTATTATTTT
1 ATTTTTTTATTATTTT
14936526 -TTGTTTATTATTTATTTTT
1 ATT-TTT-TTA-TTA-TTTT
* *
14936545 ATTATTTACTATTATATT
1 ATT-TTT-TTATTATTTT
* *
14936563 ATAATTTATATTATTATT
1 AT-TTTTTTATTATT-TT
14936581 ATTTTTTTATTGATTTT
1 ATTTTTTTATT-ATTTT
14936598 ATCTTTT
1 AT-TTTT
14936605 CTTGATTAAC
Statistics
Matches: 103, Mismatches: 11, Indels: 26
0.74 0.08 0.19
Matches are distributed among these distances:
15 5 0.05
16 30 0.29
17 28 0.27
18 25 0.24
19 7 0.07
20 8 0.08
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (16 bp):
ATTTTTTTATTATTTT
Found at i:14936599 original size:23 final size:22
Alignment explanation
Indices: 14936466--14936599 Score: 72
Period size: 23 Copynumber: 6.2 Consensus size: 22
14936456 GGTCCATTTA
14936466 TTTACTTATT-TATTTTTA--AT
1 TTTA-TTATTATATTTTTATTAT
14936486 TTTATT-TTAT-TTTGTT-TCTAT
1 TTTATTATTATATTT-TTAT-TAT
* *
14936507 TTTATTTTTTTATTATTT-TT-T
1 TTTATTATTATATT-TTTATTAT
14936528 GTTTATTATT-TATTTTTATTA-
1 -TTTATTATTATATTTTTATTAT
* * *
14936549 TTTACTATTATATTATAATTTAT
1 TTTATTATTATATTTTTA-TTAT
* *
14936572 ATTATTATTATTTTTTTATTGAT
1 TTTATTATTATATTTTTATT-AT
14936595 TTTAT
1 TTTAT
14936600 CTTTTCTTGA
Statistics
Matches: 88, Mismatches: 11, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
18 5 0.06
19 5 0.06
20 15 0.17
21 21 0.24
22 17 0.19
23 24 0.27
24 1 0.01
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTATTATTATATTTTTATTAT
Found at i:14937405 original size:3 final size:3
Alignment explanation
Indices: 14937399--14937431 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
14937389 TTTTTTTAAT
14937399 TTA TTA TTTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT
14937432 TTTAAATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:14937572 original size:64 final size:59
Alignment explanation
Indices: 14937496--14937763 Score: 192
Period size: 58 Copynumber: 4.4 Consensus size: 59
14937486 TTTTTAAATG
* *
14937496 ATTTT-CTT-AAAATAAAAATTCCAAAATATATATATATTTTTGAGGAAAAGTTGAAAGTATTA
1 ATTTTCCTTAAAAATAAAAATTCCAAAA-A-A-ATAT-TTTTAG-GGAAAAGTTGAAAGTATCA
*
14937558 ATTTTCCTTAAAAAT-AAAATTCTAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTCCTTAAAAATAAAAATTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCA
** * * * *
14937616 ATTTTCCTTAAAAATAAAGTTTCTAAAATAAAAATTTTCAAAAACATTTTGGGGGAAAGTTGAAA
1 ATTTTCCTTAAAAATAAAAATTC--CAA-AAAAA---T-----A-TTTTTAGGGAAAAGTTGAAA
* *
14937681 TTGTCA
54 GTATCA
* *
14937687 A-TTTCCCTAAAAATAAAAAGTT-C-AAAAAATATTTTGA-GGAAAAGTTGAAAGTATCA
1 ATTTTCCTTAAAAATAAAAA-TTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCA
*
14937743 AATTTCCTT-AAAATAAAAATT
1 ATTTTCCTTAAAAATAAAAATT
14937764 TTAAAAGAAA
Statistics
Matches: 167, Mismatches: 22, Indels: 41
0.73 0.10 0.18
Matches are distributed among these distances:
55 2 0.01
56 27 0.16
57 9 0.05
58 34 0.20
59 10 0.06
60 4 0.02
61 3 0.02
62 11 0.07
63 15 0.09
64 5 0.03
65 1 0.01
66 5 0.03
67 1 0.01
70 16 0.10
71 24 0.14
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.35
Consensus pattern (59 bp):
ATTTTCCTTAAAAATAAAAATTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCA
Found at i:14937593 original size:58 final size:60
Alignment explanation
Indices: 14937496--14937653 Score: 198
Period size: 58 Copynumber: 2.6 Consensus size: 60
14937486 TTTTTAAATG
* * * *
14937496 ATTTT-CTT-AAAATAAAAATTCCAAAATATATATATATTTTTGAGGAAAAGTTGAAAGTATTA
1 ATTTTCCTTAAAAATAAAGATTCTAAAATA-A-ATAT-TTTTAG-GGAAAAGTTGAAAGTATCA
14937558 ATTTTCCTTAAAAATAAA-ATTCTAAAA-AAATATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTCCTTAAAAATAAAGATTCTAAAATAAATATTTTTAGGGAAAAGTTGAAAGTATCA
* *
14937616 ATTTTCCTTAAAAATAAAGTTTCTAAAATAAAAATTTT
1 ATTTTCCTTAAAAATAAAGATTCTAAAATAAATATTTT
14937654 CAAAAACATT
Statistics
Matches: 87, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
58 36 0.41
59 13 0.15
60 12 0.14
61 1 0.01
62 6 0.07
63 11 0.13
64 8 0.09
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.38
Consensus pattern (60 bp):
ATTTTCCTTAAAAATAAAGATTCTAAAATAAATATTTTTAGGGAAAAGTTGAAAGTATCA
Found at i:14937644 original size:72 final size:70
Alignment explanation
Indices: 14937568--14937703 Score: 166
Period size: 71 Copynumber: 1.9 Consensus size: 70
14937558 ATTTTCCTTA
* *
14937568 AAAAT-AAAATTCTAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
1 AAAATAAAAATT-TAAAAAAACA-TTTTAGGGAAAAGTTGAAAGTATCAA-TTTCCCTAAAAATA
14937632 AAGTTTCT
63 AAGTTTCT
** * * * *
14937640 AAAATAAAAATTTTCAAAAACATTTTGGGGGAAAGTTGAAATTGTCAATTTCCCTAAAAATAAA
1 AAAATAAAAATTTAAAAAAACATTTTAGGGAAAAGTTGAAAGTATCAATTTCCCTAAAAATAAA
14937704 AAGTTCAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
70 15 0.27
71 22 0.40
72 12 0.22
73 6 0.11
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (70 bp):
AAAATAAAAATTTAAAAAAACATTTTAGGGAAAAGTTGAAAGTATCAATTTCCCTAAAAATAAAG
TTTCT
Found at i:14937700 original size:56 final size:56
Alignment explanation
Indices: 14937640--14937769 Score: 158
Period size: 56 Copynumber: 2.3 Consensus size: 56
14937630 TAAAGTTTCT
* * * *
14937640 AAAATAAAAATTTTCAAAAACATTTTGGGGGAAAGTTGAAATTGTC-AATTTCCCTA
1 AAAATAAAAATTTTCAAAAACATTTTGAGGAAAAGTTGAAAGTATCAAATTT-CCTA
* * *
14937696 AAAATAAAAA-GTTCAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAAATTTCCTT
1 AAAATAAAAATTTTC-AAAAACATTTTGAGGAAAAGTTGAAAGTATCAAATTTCCTA
14937752 AAAATAAAAATTTT-AAAA
1 AAAATAAAAATTTTCAAAA
14937770 GAAAAAAGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
55 7 0.11
56 49 0.78
57 7 0.11
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.31
Consensus pattern (56 bp):
AAAATAAAAATTTTCAAAAACATTTTGAGGAAAAGTTGAAAGTATCAAATTTCCTA
Found at i:14937776 original size:127 final size:128
Alignment explanation
Indices: 14937533--14937837 Score: 343
Period size: 127 Copynumber: 2.4 Consensus size: 128
14937523 ATATATATAT
* * *
14937533 TTTTGAGGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAAATTCTAAAAAAATATTTTTAGG
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCCTAAAAATAAAATTC-AAAAAAATATTTTGAGG
* * *
14937598 GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCTAAAATAAAAATTTTCAAAAACA
65 GAAAAGTTGAAAGTATCAAATTTCCTTAAAAATAAAATTTCTAAAAAAAAAATTTTCAAAAACA
* * * *
14937662 TTTTGGGGGAAAGTTGAAATTGTCAA-TTTCCCTAAAAATAAAAAGTTC-AAAAAATATTTTGA-
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCCTAAAAAT-AAAA-TTCAAAAAAATATTTTGAG
* *
14937724 GGAAAAGTTGAAAGTATCAAATTTCCTT-AAAATAAAAATTT-TAAAAGAAAAAA-GTCCAGAAA
64 GGAAAAGTTGAAAGTATCAAATTTCCTTAAAAAT-AAAATTTCTAAAA-AAAAAATTTTC--AAA
*
14937786 ATATA
125 A-ACA
* * *
14937791 TTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATT
1 TTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCCTAAAAATAAAATT
14937838 TTTAAAAATA
Statistics
Matches: 147, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
126 12 0.08
127 38 0.26
128 29 0.20
129 35 0.24
130 22 0.15
131 11 0.07
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (128 bp):
TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCCTAAAAATAAAATTCAAAAAAATATTTTGAGGG
AAAAGTTGAAAGTATCAAATTTCCTTAAAAATAAAATTTCTAAAAAAAAAATTTTCAAAAACA
Found at i:14937813 original size:74 final size:72
Alignment explanation
Indices: 14937694--14937914 Score: 266
Period size: 76 Copynumber: 3.0 Consensus size: 72
14937684 TCAATTTCCC
* * *
14937694 TAAAAATAAAAAGTTCAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAAATTTCCTT-AAAATA
1 TAAAAATAAAAAGTCCAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
14937758 AAAATTT
66 AAAATTT
*
14937765 TAAAAGA-AAAAAGTCCAGAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGAA
1 TAAAA-ATAAAAAGTCCA-AAAA-ATATTTTTAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAA
*
14937829 AATAAAATTTT
62 AATAAAAATTT
* * * *
14937840 TAAAAATAAAAATTATCAAAAAAAAATATTTTTAGGAAAAGTTGGAAGTACCAATTTTCCTTAAA
1 TAAAAATAAAAA--GTC--CAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
*
14937905 AAGAAAAATT
62 AATAAAAATT
14937915 ATCAAGAAAA
Statistics
Matches: 129, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
71 14 0.11
72 5 0.04
73 10 0.08
74 26 0.20
75 22 0.17
76 34 0.26
77 13 0.10
78 4 0.03
79 1 0.01
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.31
Consensus pattern (72 bp):
TAAAAATAAAAAGTCCAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
AAAATTT
Found at i:14937853 original size:16 final size:16
Alignment explanation
Indices: 14937827--14937873 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
14937817 ATTTTCCTTG
14937827 AAAAT-AAAATTTTTA
1 AAAATAAAAATTTTTA
* *
14937842 AAAATAAAAATTATCA
1 AAAATAAAAATTTTTA
14937858 AAAA-AAAATATTTTTA
1 AAAATAAAA-ATTTTTA
14937874 GGAAAAGTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAATAAAAATTTTTA
Found at i:14937959 original size:61 final size:61
Alignment explanation
Indices: 14937839--14937957 Score: 168
Period size: 60 Copynumber: 2.0 Consensus size: 61
14937829 AATAAAATTT
* * * *
14937839 TTAAAAATAAAAATTATCAAAAAAAAATATTTTTAGGAAAAGTTGGAAGTACCAATTTTCC
1 TTAAAAAGAAAAATTATCAAAAAAAAACATTTTAAGGAAAAGTTGAAAGTACCAATTTTCC
* * *
14937900 TTAAAAAGAAAAATTATC-AAGAAAAACATTTTAAGGAAGAGTTGAAAGTATCAATTTT
1 TTAAAAAGAAAAATTATCAAAAAAAAACATTTTAAGGAAAAGTTGAAAGTACCAATTTT
14937958 TCTTGTACAA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
60 34 0.67
61 17 0.33
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (61 bp):
TTAAAAAGAAAAATTATCAAAAAAAAACATTTTAAGGAAAAGTTGAAAGTACCAATTTTCC
Found at i:14938340 original size:143 final size:143
Alignment explanation
Indices: 14938188--14938475 Score: 567
Period size: 143 Copynumber: 2.0 Consensus size: 143
14938178 AATTAAGAAT
14938188 AATTTTCAATACTAATTATTTGATAAATTTTTAAGGCTTATTGGATAACATGAAATTAAGCTGGT
1 AATTTTCAATACTAATTATTTGATAAATTTTTAAGGCTTATTGGATAACATGAAATTAAGCTGGT
14938253 ACCATATTTCGATGGGCGTTGTAAGGGTGCTATAACTTTCTTCATACGTAACCGTACTCTTGAAC
66 ACCATATTTCGATGGGCGTTGTAAGGGTGCTATAACTTTCTTCATACGTAACCGTACTCTTGAAC
*
14938318 CTTGTTCTGGTTA
131 CTTGTTCTAGTTA
14938331 AATTTTCAATACTAATTATTTGATAAATTTTTAAGGCTTATTGGATAACATGAAATTAAGCTGGT
1 AATTTTCAATACTAATTATTTGATAAATTTTTAAGGCTTATTGGATAACATGAAATTAAGCTGGT
14938396 ACCATATTTCGATGGGCGTTGTAAGGGTGCTATAACTTTCTTCATACGTAACCGTACTCTTGAAC
66 ACCATATTTCGATGGGCGTTGTAAGGGTGCTATAACTTTCTTCATACGTAACCGTACTCTTGAAC
14938461 CTTGTTCTAGTTA
131 CTTGTTCTAGTTA
14938474 AA
1 AA
14938476 GACCCGAACC
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 144 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (143 bp):
AATTTTCAATACTAATTATTTGATAAATTTTTAAGGCTTATTGGATAACATGAAATTAAGCTGGT
ACCATATTTCGATGGGCGTTGTAAGGGTGCTATAACTTTCTTCATACGTAACCGTACTCTTGAAC
CTTGTTCTAGTTA
Found at i:14942662 original size:60 final size:59
Alignment explanation
Indices: 14942360--14942691 Score: 422
Period size: 61 Copynumber: 5.5 Consensus size: 59
14942350 TTGTGTAGGA
* * *
14942360 AAAATTGATACTTTCAACTTTTCCCCAAAAATAC-TTTTTTGGAAATTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATTCTTTTTTTGAAAATTTGATTTTCAAGG
* *
14942418 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTTGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCC-C-AAAA-ATTCTTTTTTTGAAAATTTGATTTTCAAGG
* *
14942480 AAAATTGATACTTTCAACTTTTCCCTAAAAA-T-ATTTTTCGAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATTCTTTTTTTGAAAA-TTTGATTTTCAAGG
* * *
14942539 AAAATTGATACTTTCAACTTTTTCCCAAAAATTTTTTTTTTTGAAACTTTGATTTCCAAGG
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAA-TTCTTTTTTTGAAAATTTGATTTTCAAGG
* *
14942600 AAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAAATTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAAT-TCTTTTTTTGAAAATTTGATTTTCAAGG
14942660 AAAATTGATACTTTCAACTTTTCCCCAAAAAT
1 AAAATTGATACTTTCAACTTTT-CCCAAAAAT
14942692 AGTTTTTGGA
Statistics
Matches: 242, Mismatches: 19, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
57 2 0.01
58 32 0.13
59 42 0.17
60 53 0.22
61 71 0.29
62 42 0.17
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.44
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATTCTTTTTTTGAAAATTTGATTTTCAAGG
Found at i:14942733 original size:14 final size:14
Alignment explanation
Indices: 14942714--14942741 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14942704 TTTATTTCTA
14942714 AGAAAAATTGATAC
1 AGAAAAATTGATAC
14942728 AGAAAAATTGATAC
1 AGAAAAATTGATAC
14942742 TTTCAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
AGAAAAATTGATAC
Found at i:14942738 original size:71 final size:72
Alignment explanation
Indices: 14942660--14942799 Score: 219
Period size: 71 Copynumber: 2.0 Consensus size: 72
14942650 ATTTTTAAGG
*
14942660 AAAATTGATACTTTCAACTTTTCCCCAAAAAT-AGTTTTTGGAAATTTATTTCTAAGAAAAATTG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATCAGTTTTTGAAAATTTATTTCTAAGAAAAATTG
14942724 ATACAGA
66 ATACAGA
* ** * *
14942731 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTGAAAATTTATTTTTAAGGAAAATTG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATCAGTTTTTGAAAATTTATTTCTAAGAAAAATTG
14942796 ATAC
66 ATAC
14942800 TTTCAACTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 31 0.50
72 31 0.50
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (72 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATCAGTTTTTGAAAATTTATTTCTAAGAAAAATTG
ATACAGA
Found at i:14942802 original size:129 final size:133
Alignment explanation
Indices: 14942600--14942858 Score: 429
Period size: 129 Copynumber: 2.0 Consensus size: 133
14942590 ATTTCCAAGG
14942600 AAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 AAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAAATTTATTTTTAAGGAAAAT
*
14942665 TGATACTTTCAACTTTTCCCCAAAAATAGTTTTTGGAAA-TTT-A-TTTCTAAGAAAAATTGATA
66 TGATACTTTCAACTTTTCCCCAAAAATAGTTTTTGAAAATTTTGATTTTC-AAGAAAAATTGATA
14942727 CAGA
130 CAGA
*
14942731 AAAATTGATACTTTCAACTTTTCCTCAAAAATC-C-TTTTTTGAAAATTTATTTTTAAGGAAAAT
1 AAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAAATTTATTTTTAAGGAAAAT
* * *
14942794 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTTGATTTTCAAGGAAAATTGATAC
66 TGATACTTTCAACTTTTCCCCAAAAATAGTTTTTGAAAATTTTGATTTTCAAGAAAAATTGATAC
14942859 TTTCAACTTT
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
129 65 0.54
130 4 0.03
131 47 0.39
132 4 0.03
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (133 bp):
AAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTTTTTTGAAAATTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATAGTTTTTGAAAATTTTGATTTTCAAGAAAAATTGATAC
AGA
Found at i:14942803 original size:58 final size:58
Alignment explanation
Indices: 14942731--14942886 Score: 244
Period size: 59 Copynumber: 2.7 Consensus size: 58
14942721 TTGATACAGA
* *
14942731 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTGAAAA-TTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAAT-ATTTTTTGAAAATTTTGATTTTCAAGG
14942789 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTGAAAATTTTGATTTTCAAGG
14942848 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTT
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTT
14942887 TGATTTTTAT
Statistics
Matches: 92, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
57 12 0.13
58 33 0.36
59 40 0.43
60 7 0.08
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAAATTTTGATTTTCAAGG
Found at i:14942927 original size:22 final size:22
Alignment explanation
Indices: 14942902--14942943 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14942892 TTTATTTAAA
14942902 GAAAATAGAACAAA-ATAAAAGT
1 GAAAATA-AACAAACATAAAAGT
*
14942924 GAAAATAAATAAACATAAAA
1 GAAAATAAACAAACATAAAA
14942944 AAAATAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.14
Consensus pattern (22 bp):
GAAAATAAACAAACATAAAAGT
Found at i:14942961 original size:19 final size:21
Alignment explanation
Indices: 14942925--14942972 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
14942915 AATAAAAGTG
*
14942925 AAAATAAATAAACAT-AAA-A
1 AAAATAAAGAAACATAAAACA
14942944 AAAATAAAGAAA-AGTAAAACA
1 AAAATAAAGAAACA-TAAAACA
14942965 AAAATAAA
1 AAAATAAA
14942973 AATAAGATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 12 0.48
20 3 0.12
21 9 0.36
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.12
Consensus pattern (21 bp):
AAAATAAAGAAACATAAAACA
Found at i:14943413 original size:20 final size:20
Alignment explanation
Indices: 14943388--14943427 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14943378 TTCGTCGGAT
14943388 TCTGG-AAATTGTCATCGAAA
1 TCTGGAAAATT-TCATCGAAA
14943408 TCTGGAAAATTTCATCGAAA
1 TCTGGAAAATTTCATCGAAA
14943428 GTTGGTCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (20 bp):
TCTGGAAAATTTCATCGAAA
Found at i:14944028 original size:4 final size:4
Alignment explanation
Indices: 14944019--14944112 Score: 55
Period size: 4 Copynumber: 21.5 Consensus size: 4
14944009 AAAAAAGAAT
* * *
14944019 AATA AATA AATTA TAATA TAAT- AATA AATA TATA ATTA TATA AATAA
1 AATA AATA AA-TA -AATA -AATA AATA AATA AATA AATA AATA AAT-A
* *
14944066 AATA CATATA AATA TTAACA ACAAA AATA AATA AATA AATA AATA AA
1 AATA -A-ATA AATA --AATA A-ATA AATA AATA AATA AATA AATA AA
14944113 GATATACATA
Statistics
Matches: 72, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
3 3 0.04
4 44 0.61
5 17 0.24
6 8 0.11
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (4 bp):
AATA
Found at i:14944041 original size:19 final size:20
Alignment explanation
Indices: 14944017--14944148 Score: 78
Period size: 20 Copynumber: 6.4 Consensus size: 20
14944007 GAAAAAAAGA
14944017 ATAATAAATAAAT-TATAAT
1 ATAATAAATAAATATATAAT
14944036 ATAAT-AATAAATATATAAT
1 ATAATAAATAAATATATAAT
14944055 -TATATAAATAAAATACATATAAAT
1 ATA-ATAAAT-AAAT--ATAT-AAT
* * *
14944079 ATTAACAACAAAAATAAATAA-
1 A-TAATAA-ATAAATATATAAT
*
14944100 ATAAATAAATAAAGATATACAT
1 AT-AATAAATAAATATATA-AT
* *
14944122 AT-ATTAATACATA-ATAAT
1 ATAATAAATAAATATATAAT
14944140 AATAATAAA
1 -ATAATAAA
14944149 ATACATAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 29
0.69 0.09 0.23
Matches are distributed among these distances:
18 11 0.13
19 18 0.21
20 24 0.28
21 10 0.11
22 4 0.05
23 7 0.08
24 3 0.03
25 7 0.08
26 3 0.03
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (20 bp):
ATAATAAATAAATATATAAT
Found at i:14944048 original size:12 final size:12
Alignment explanation
Indices: 14944016--14944148 Score: 51
Period size: 12 Copynumber: 11.8 Consensus size: 12
14944006 AGAAAAAAAG
14944016 AATAATAAATA-
1 AATAATAAATAT
*
14944027 AATTAT-AATAT
1 AATAATAAATAT
14944038 AATAATAAATAT
1 AATAATAAATAT
*
14944050 -ATAAT-TATAT
1 AATAATAAATAT
14944060 -A-AATAAA-AT
1 AATAATAAATAT
14944069 ACAT-ATAAATATT
1 A-ATAATAAATA-T
* * *
14944082 AACAACAAAAAT
1 AATAATAAATAT
14944094 -A-AATAAATA-
1 AATAATAAATAT
*
14944103 AATAAATAAAGAT
1 AAT-AATAAATAT
*
14944116 -ATACATATAT-T
1 AATA-ATAAATAT
14944127 AATACAT-AATAAT
1 AATA-ATAAAT-AT
14944140 AATAATAAA
1 AATAATAAA
14944149 ATACATAAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 34
0.66 0.09 0.25
Matches are distributed among these distances:
9 5 0.05
10 17 0.19
11 26 0.29
12 29 0.32
13 14 0.15
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.31
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:14944055 original size:25 final size:25
Alignment explanation
Indices: 14944016--14944078 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
14944006 AGAAAAAAAG
*
14944016 AATAAT-AA-ATAAATTATA-ATAT
1 AATAATAAATATAAATTATATAAAT
14944038 AATAATAAATATATAATTATATAAAT
1 AATAATAAATATA-AATTATATAAAT
*
14944064 AA-AATACATATAAAT
1 AATAATAAATATAAAT
14944079 ATTAACAACA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 6 0.17
23 2 0.06
24 6 0.17
25 16 0.46
26 5 0.14
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
AATAATAAATATAAATTATATAAAT
Found at i:14944059 original size:22 final size:22
Alignment explanation
Indices: 14944016--14944061 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
14944006 AGAAAAAAAG
*
14944016 AATAATAAATAAATTATAATAT
1 AATAATAAATAAATAATAATAT
* *
14944038 AATAATAAATATATAATTATAT
1 AATAATAAATAAATAATAATAT
14944060 AA
1 AA
14944062 ATAAAATACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AATAATAAATAAATAATAATAT
Found at i:14944170 original size:21 final size:20
Alignment explanation
Indices: 14944127--14944170 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
14944117 TACATATATT
* *
14944127 AATACATAATAATAATAATAA
1 AATACATAA-AATAAAAAGAA
14944148 AATACATAAAATACAAAAGAA
1 AATACATAAAATA-AAAAGAA
14944169 AA
1 AA
14944171 AAAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.20
Consensus pattern (20 bp):
AATACATAAAATAAAAAGAA
Found at i:14944183 original size:80 final size:84
Alignment explanation
Indices: 14944019--14944178 Score: 201
Period size: 82 Copynumber: 2.0 Consensus size: 84
14944009 AAAAAAGAAT
* *
14944019 AATAAATAAATTATAATATAATAATAAATATATAATTATATAAATAAAATACATATAAATATTAA
1 AATAAATAAAATATAATATAATAATAAATATATAATTATATAAATAAAATACATATAAATATCAA
14944084 CAACAAAAATAAATAAATA
66 CAACAAAAATAAATAAATA
* *
14944103 AATAAATAAAGATATACATATATTAATACATA-ATAA-TA-AT-AATAAAATACATA-AAATA-C
1 AATAAATAAA-ATATA-ATATAATAATAAATATATAATTATATAAATAAAATACATATAAATATC
*
14944162 AA-AAGAAAAA-AAATAAA
64 AACAACAAAAATAAATAAA
14944179 AATAATACAA
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
78 7 0.10
79 7 0.10
80 2 0.03
81 5 0.07
82 13 0.19
83 2 0.03
84 12 0.17
85 8 0.12
86 13 0.19
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (84 bp):
AATAAATAAAATATAATATAATAATAAATATATAATTATATAAATAAAATACATATAAATATCAA
CAACAAAAATAAATAAATA
Found at i:14944360 original size:1 final size:1
Alignment explanation
Indices: 14944349--14944401 Score: 61
Period size: 1 Copynumber: 53.0 Consensus size: 1
14944339 AACATTGTCA
* * * * *
14944349 TTTTTTGTTTTTTTTTTATTTTTTGTGTTTTTTTTTTTTTTATTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14944402 ACCAAACTCC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.04, C:0.00, G:0.06, T:0.91
Consensus pattern (1 bp):
T
Found at i:14944371 original size:18 final size:18
Alignment explanation
Indices: 14944348--14944400 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
14944338 CAACATTGTC
14944348 ATTTTTTGTTTTTTTTTT
1 ATTTTTTGTTTTTTTTTT
*
14944366 ATTTTTTGTGTTTTTTTT
1 ATTTTTTGTTTTTTTTTT
*
14944384 -TTTTTTATTTTTTTTTT
1 ATTTTTTGTTTTTTTTTT
14944401 TACCAAACTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
17 15 0.47
18 17 0.53
ACGTcount: A:0.06, C:0.00, G:0.06, T:0.89
Consensus pattern (18 bp):
ATTTTTTGTTTTTTTTTT
Found at i:14944483 original size:41 final size:41
Alignment explanation
Indices: 14944408--14944496 Score: 135
Period size: 41 Copynumber: 2.2 Consensus size: 41
14944398 TTTTACCAAA
* *
14944408 CTCCTCTAAACATAGGCTCAACGACTTTTGAAAATAAATTG
1 CTCCTCTAAACAGAGGCACAACGACTTTTGAAAATAAATTG
*
14944449 CTCCTCTAAACAGAGGCACCACGA-TTTTGAAAAATAAATTG
1 CTCCTCTAAACAGAGGCACAACGACTTTTG-AAAATAAATTG
14944490 CTCCTCT
1 CTCCTCT
14944497 TGGAAAATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 5 0.11
41 39 0.89
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (41 bp):
CTCCTCTAAACAGAGGCACAACGACTTTTGAAAATAAATTG
Found at i:14944537 original size:62 final size:62
Alignment explanation
Indices: 14944437--14944556 Score: 231
Period size: 62 Copynumber: 1.9 Consensus size: 62
14944427 AACGACTTTT
14944437 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGATTTTGAAAAATAAATTGCTCCTCTTG
1 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGATTTTGAAAAATAAATTGCTCCTCTTG
*
14944499 GAAAATAAATTGCTCCTCTAAACAGAGGCACCATGATTTTGAAAAATAAATTGCTCCT
1 GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGATTTTGAAAAATAAATTGCTCCT
14944557 TGACAATCAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (62 bp):
GAAAATAAATTGCTCCTCTAAACAGAGGCACCACGATTTTGAAAAATAAATTGCTCCTCTTG
Found at i:14946115 original size:97 final size:99
Alignment explanation
Indices: 14946005--14946223 Score: 230
Period size: 101 Copynumber: 2.2 Consensus size: 99
14945995 TTAATTCCAT
* * * ** *
14946005 ATTTAAATTCTCCATTCGTTT-AGTAGGATT-AAAAT-TTTTCTTTTCTCAAAAATTCATATGAA
1 ATTTAAATTCTCCAATCATTTGA-TAGAATTAAAAATATTTAATTTTCACAAAAATTCATATGAA
*
14946067 ATTCTCCAATCATTTGGTTTAATTCACAATTCAAG
65 ATTCTCCAATAATTTGGTTTAATTCACAATTCAAG
* *
14946102 ATTT-AATTCCTCCAATCATTTGATAGAATTAAAAAATAATTTAATTTTCACAAAAATTTATTTG
1 ATTTAAATT-CTCCAATCATTTGATAGAATT-AAAAAT-ATTTAATTTTCACAAAAATTCATATG
** * * * *
14946166 AAATTCTCCAATAATTTGGTAGAATCCATAATTTAAA
63 AAATTCTCCAATAATTTGGTTTAATTCACAATTCAAG
*
14946203 ATTAAAATTCTCCAATCATTT
1 ATTTAAATTCTCCAATCATTT
14946224 AGTAGGAAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
96 4 0.04
97 20 0.20
98 1 0.01
99 5 0.05
101 65 0.66
102 4 0.04
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (99 bp):
ATTTAAATTCTCCAATCATTTGATAGAATTAAAAATATTTAATTTTCACAAAAATTCATATGAAA
TTCTCCAATAATTTGGTTTAATTCACAATTCAAG
Found at i:14950949 original size:13 final size:12
Alignment explanation
Indices: 14950923--14950961 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 12
14950913 TGCTCCACCC
14950923 AAAAAAAAGCAAA
1 AAAAAAAAG-AAA
14950936 AAGAAAAAAGAAA
1 AA-AAAAAAGAAA
14950949 AAAAAAAGAGAAA
1 AAAAAAA-AGAAA
14950962 TTGATGGGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.21
13 12 0.50
14 7 0.29
ACGTcount: A:0.85, C:0.03, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:14951368 original size:21 final size:22
Alignment explanation
Indices: 14951336--14951385 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
14951326 AAAAAAATTG
14951336 TAAAAAATAAGACAAGCAAAAA
1 TAAAAAATAAGACAAGCAAAAA
*
14951358 TAAAAAA-AAGACAAGTAAAAA
1 TAAAAAATAAGACAAGCAAAAA
*
14951379 GAAAAAA
1 TAAAAAA
14951386 GACAAAGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.76, C:0.06, G:0.10, T:0.08
Consensus pattern (22 bp):
TAAAAAATAAGACAAGCAAAAA
Found at i:14952473 original size:114 final size:114
Alignment explanation
Indices: 14952264--14952482 Score: 276
Period size: 114 Copynumber: 1.9 Consensus size: 114
14952254 TTATAACATC
* *
14952264 AGTCCGATCATTTACTTACAACCTTGACTCAATCTTAACCACCTTCAGACTTACAGTATCGTCCC
1 AGTCCGATCATTTACCTACAACCTTGACTCAATCTTAACCACCTTCAGACTCACAGTATCGTCCC
* *
14952329 AATCATCTGATCTTGACTTAGGTCAAATCATTTTTAGACTCACGATATT
66 AATCATCTGATCTTGACTTAGGTCAAATCATCTTCAGACTCACGATATT
** * ** * *** * **
14952378 AGTCCGATCATTTACCTATGACCTTGACTCGATCTTAGTCACTTTCAGACTCGTGGTATTGTTTC
1 AGTCCGATCATTTACCTACAACCTTGACTCAATCTTAACCACCTTCAGACTCACAGTATCGTCCC
* *
14952443 AATCATCTGATCTTGACTTAGGTTAGATCATCTTCAGACT
66 AATCATCTGATCTTGACTTAGGTCAAATCATCTTCAGACT
14952483 TTTTTAAACT
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
114 87 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (114 bp):
AGTCCGATCATTTACCTACAACCTTGACTCAATCTTAACCACCTTCAGACTCACAGTATCGTCCC
AATCATCTGATCTTGACTTAGGTCAAATCATCTTCAGACTCACGATATT
Found at i:14952855 original size:60 final size:60
Alignment explanation
Indices: 14952775--14952903 Score: 152
Period size: 60 Copynumber: 2.1 Consensus size: 60
14952765 TTTTTAGACA
* * * * * *
14952775 CGCGACATCAGT-CTGATCATTTATCTATGACCTTGACTTGATCTTAGTCACCTTCAGACT
1 CGCGACATCAGTCCT-CTCATTTACCTACGACCTTGAATCGATCTTAGTCACCTTCAAACT
* * * *
14952835 CGCGGCATCAGTCCTCTCATTTACCTACGACCTTGAATCGATCTTGGTCATCTTTAAACT
1 CGCGACATCAGTCCTCTCATTTACCTACGACCTTGAATCGATCTTAGTCACCTTCAAACT
14952895 CGCGACATC
1 CGCGACATC
14952904 GTCTCAGTCA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
60 55 0.96
61 2 0.04
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (60 bp):
CGCGACATCAGTCCTCTCATTTACCTACGACCTTGAATCGATCTTAGTCACCTTCAAACT
Found at i:14952878 original size:174 final size:174
Alignment explanation
Indices: 14952652--14952986 Score: 413
Period size: 174 Copynumber: 1.9 Consensus size: 174
14952642 GTTAGATTAT
* *
14952652 CTTCAGACTCACAGCATCAGTCCGATCATTTAACTATAACCTTAACTCGATCTTAGTCGTCTTCA
1 CTTCAGACTCACAGCATCAGTCCGATCATTTAACTACAACCTTAACTCGATCTTAGTCATCTTCA
* * * *
14952717 AACTCGCCACATCATCTTAGTCATCTAATCTAGACTCAAGTCAGATCATTTTTAGACACGCGACA
66 AACTCGCCACATCATCTCAGTCATCTAATATAGACTCAAATCAGATCATCTTTAGACACGCGACA
*
14952782 TCAGTCTGATCATTTA-TCTATGACCTTGACTTGATCTTAGTCAC
131 TCAGTCTGATCATTTACT-TACGACCTTGACTTGATCTTAGTCAC
* * ** * * * *
14952826 CTTCAGACTCGCGGCATCAGTCCTCTCATTTACCTACGACCTTGAA-TCGATCTTGGTCATCTTT
1 CTTCAGACTCACAGCATCAGTCCGATCATTTAACTACAACCTT-AACTCGATCTTAGTCATCTTC
* * * * * * * *
14952890 AAACTCGCGACATCGTCTCAGTCATCTGATATTGACTTAAATCAGATCATCTTTAGACTCGTGGC
65 AAACTCGCCACATCATCTCAGTCATCTAATATAGACTCAAATCAGATCATCTTTAGACACGCGAC
* *
14952955 ATCAGTTTGGTCATTTACTTACGACCTTGACT
130 ATCAGTCTGATCATTTACTTACGACCTTGACT
14952987 CGATTTTGGT
Statistics
Matches: 134, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
174 131 0.98
175 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (174 bp):
CTTCAGACTCACAGCATCAGTCCGATCATTTAACTACAACCTTAACTCGATCTTAGTCATCTTCA
AACTCGCCACATCATCTCAGTCATCTAATATAGACTCAAATCAGATCATCTTTAGACACGCGACA
TCAGTCTGATCATTTACTTACGACCTTGACTTGATCTTAGTCAC
Found at i:14953083 original size:114 final size:114
Alignment explanation
Indices: 14952826--14953095 Score: 274
Period size: 114 Copynumber: 2.4 Consensus size: 114
14952816 TCTTAGTCAC
** *
14952826 CTTCAGACTCGCGGCATCAGTCCTCTCATTTACCTACGACCTTGAATCGATCTTGGTCATCTTTA
1 CTTCAGACTCGCGGCATCAGTCCGATCATTTACTTACGACCTTGAATCGATCTTGGTCATCTTTA
* * * ** * * *
14952891 AACTCGCGACATCGTCTCAGTCATCTGATATTGACTTAAATCAGATCAT
66 AACTCACGACATCATCTCAATCATCTGATATCAACTCAAATAAAATCAT
* * ** * * *
14952940 CTTTAGACTCGTGGCATCAGTTTGGTCATTTACTTACGACCTTGACTCGATTTTGGTCAT-TTTC
1 CTTCAGACTCGCGGCATCAGTCCGATCATTTACTTACGACCTTGAATCGATCTTGGTCATCTTT-
** * *
14953004 AAACTCACGGTATCATC-CTAATCATCTGATCTCAACTCAAGTAAAATCAT
65 AAACTCACGACATCATCTC-AATCATCTGATATCAACTCAAATAAAATCAT
* * * *
14953054 CTTCAGACTCACAGCATCAGTCCGATCATTTATTTATGACCT
1 CTTCAGACTCGCGGCATCAGTCCGATCATTTACTTACGACCT
14953096 CCACTGAGTC
Statistics
Matches: 124, Mismatches: 30, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
113 4 0.03
114 120 0.97
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (114 bp):
CTTCAGACTCGCGGCATCAGTCCGATCATTTACTTACGACCTTGAATCGATCTTGGTCATCTTTA
AACTCACGACATCATCTCAATCATCTGATATCAACTCAAATAAAATCAT
Found at i:14953347 original size:13 final size:13
Alignment explanation
Indices: 14953329--14953411 Score: 58
Period size: 13 Copynumber: 6.1 Consensus size: 13
14953319 AGGTTATTTT
*
14953329 TATTATTTTATTA
1 TATTATATTATTA
14953342 TATTATATTATTA
1 TATTATATTATTA
* **
14953355 TAGTATATTAACA
1 TATTATATTATTA
* * *
14953368 TAGTATATGGCAATA
1 TATTATAT--TATTA
*
14953383 TATTATATTACTA
1 TATTATATTATTA
14953396 TTATTATTATTATTA
1 -TATTA-TATTATTA
14953411 T
1 T
14953412 GTTGTACACA
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
13 33 0.59
14 6 0.11
15 17 0.30
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:14953430 original size:3 final size:3
Alignment explanation
Indices: 14953424--14953514 Score: 63
Period size: 3 Copynumber: 31.7 Consensus size: 3
14953414 TGTACACAGT
* **
14953424 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TGA TGT- TGTA CACA GTT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA -TTA -TTA
14953471 TT- TTA TTA TTA TTA TTA TT- TTA TT- TTA TT- TTA TT- TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14953513 TT
1 TT
14953515 TTCTTTCTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
2 14 0.19
3 57 0.79
4 1 0.01
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14953438 original size:46 final size:46
Alignment explanation
Indices: 14953383--14953499 Score: 186
Period size: 46 Copynumber: 2.6 Consensus size: 46
14953373 TATGGCAATA
*
14953383 TATTA-TATTACTATTATTATTATTATTATGTTGTACACAGTTTAT
1 TATTATTATTATTATTATTATTATTATTATGTTGTACACAGTTTAT
* *
14953428 TATTATTATTATTATTATTATTATTATGATGTTGTACACAGTTTTT
1 TATTATTATTATTATTATTATTATTATTATGTTGTACACAGTTTAT
14953474 TATTATTATTATTATT-TTATT-TTATT
1 TATTATTATTATTATTATTATTATTATT
14953500 TTATTTTATT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
44 4 0.06
45 10 0.15
46 53 0.79
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (46 bp):
TATTATTATTATTATTATTATTATTATTATGTTGTACACAGTTTAT
Found at i:14953528 original size:5 final size:5
Alignment explanation
Indices: 14953471--14953516 Score: 74
Period size: 5 Copynumber: 8.8 Consensus size: 5
14953461 GTACACAGTT
14953471 TTTTA TTATTA TTATTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TT-TTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
14953517 CTTTCTTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 29 0.73
6 11 0.28
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:14954413 original size:14 final size:14
Alignment explanation
Indices: 14954379--14954419 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
14954369 TTTTTTCTAT
14954379 TTTTATTTTA-TT-
1 TTTTATTTTATTTC
*
14954391 TTTGA-TTTATTTC
1 TTTTATTTTATTTC
14954404 TTTTATTTTATTTC
1 TTTTATTTTATTTC
14954418 TT
1 TT
14954420 AAGTTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 4 0.17
12 6 0.25
13 4 0.17
14 10 0.42
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTTATTTTATTTC
Found at i:14955801 original size:19 final size:20
Alignment explanation
Indices: 14955774--14955816 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
14955764 ATAATGCATA
* *
14955774 AAATTAAATTAA-AAATAAT
1 AAATAAAATTAACAAATAAC
14955793 AAATAAAATTAACAAATAAC
1 AAATAAAATTAACAAATAAC
14955813 AAAT
1 AAAT
14955817 TAACAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAAAATTAACAAATAAC
Found at i:14955818 original size:15 final size:15
Alignment explanation
Indices: 14955798--14955826 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14955788 ATAATAAATA
14955798 AAATTAACAAATAAC
1 AAATTAACAAATAAC
14955813 AAATTAACAAATAA
1 AAATTAACAAATAA
14955827 TGACAGTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATTAACAAATAAC
Found at i:14959278 original size:18 final size:18
Alignment explanation
Indices: 14959255--14959306 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
14959245 TAATGAAACA
14959255 ATTTA-TATTATCATTTTT
1 ATTTATTATTAT-ATTTTT
*
14959273 ATTTATTTTTATATTTTT
1 ATTTATTATTATATTTTT
14959291 ATTTATTATTACTATT
1 ATTTATTATTA-TATT
14959307 ATATATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 21 0.70
19 9 0.30
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTATTATTATATTTTT
Found at i:14959480 original size:18 final size:17
Alignment explanation
Indices: 14959456--14959497 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
14959446 ATAATTTTTT
*
14959456 ATTATTGGTTATGATTA
1 ATTATTGGTAATGATTA
*
14959473 ATTTATTGGTAATTATTA
1 A-TTATTGGTAATGATTA
14959491 ATTATTG
1 ATTATTG
14959498 ATATTTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (17 bp):
ATTATTGGTAATGATTA
Found at i:14960795 original size:86 final size:86
Alignment explanation
Indices: 14960697--14960855 Score: 246
Period size: 86 Copynumber: 1.8 Consensus size: 86
14960687 GGTTTTTTTT
* * * *
14960697 TTTTTGGCTTATTTTTCTATTATATTTGAGTTTGATATATATTTTTTATTTTGGGTTAGTTGATG
1 TTTTTGGCTTATTTTTCTATTATATTTAAGTTTGATATATATTTTTTATTTTAGGTTAGTTAATA
14960762 TTGAGTTTCAAAAATTTTAAA
66 TTGAGTTTCAAAAATTTTAAA
* * * *
14960783 TTTTTGGTTTATTTTTCTATTATATTTAAGTTTGATTTATGTTTTTTATTTTAGGTTATTTAATA
1 TTTTTGGCTTATTTTTCTATTATATTTAAGTTTGATATATATTTTTTATTTTAGGTTAGTTAATA
14960848 TTGAGTTT
66 TTGAGTTT
14960856 GGGAATGTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.23, C:0.03, G:0.14, T:0.61
Consensus pattern (86 bp):
TTTTTGGCTTATTTTTCTATTATATTTAAGTTTGATATATATTTTTTATTTTAGGTTAGTTAATA
TTGAGTTTCAAAAATTTTAAA
Found at i:14963013 original size:17 final size:19
Alignment explanation
Indices: 14962993--14963030 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14962983 TTTAAACAAA
*
14962993 AATAAT-TTT-TACAAAAT
1 AATAATATTTCTAAAAAAT
14963010 AATAATATTTCTAAAAAAT
1 AATAATATTTCTAAAAAAT
14963029 AA
1 AA
14963031 AACAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
AATAATATTTCTAAAAAAT
Found at i:14963032 original size:6 final size:6
Alignment explanation
Indices: 14963023--14963106 Score: 52
Period size: 5 Copynumber: 13.8 Consensus size: 6
14963013 AATATTTCTA
* *
14963023 AAAAAT -AAAAC AAAAAT AATAAT AAAAAAT AAAAACCT AAAAAT -AAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAAA--T AAAAAT AAAAAT
*
14963072 -AAAAT GAAAAAAT AAAAA- GAAAAT GAAAAA- AAAAA
1 AAAAAT --AAAAAT AAAAAT AAAAAT -AAAAAT AAAAA
14963107 CCTTGTGATC
Statistics
Matches: 63, Mismatches: 6, Indels: 19
0.72 0.07 0.22
Matches are distributed among these distances:
5 23 0.37
6 20 0.32
7 9 0.14
8 11 0.17
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:14963056 original size:18 final size:17
Alignment explanation
Indices: 14963024--14963106 Score: 59
Period size: 19 Copynumber: 4.9 Consensus size: 17
14963014 ATATTTCTAA
*
14963024 AAAATAAAACA-AAAAT
1 AAAATAAAAAATAAAAT
14963040 AATAATAAAAAAT-AAA-
1 AA-AATAAAAAATAAAAT
**
14963056 AACCT-AAAAATAAAAT
1 AAAATAAAAAATAAAAT
*
14963072 AAAATGAAAAAATAAAAAG
1 AAAAT-AAAAAAT-AAAAT
14963091 AAAATGAAAAAA-AAAA
1 AAAAT-AAAAAATAAAA
14963107 CCTTGTGATC
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
14 6 0.11
15 4 0.07
16 7 0.13
17 15 0.28
18 6 0.11
19 16 0.30
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.13
Consensus pattern (17 bp):
AAAATAAAAAATAAAAT
Found at i:14963067 original size:24 final size:25
Alignment explanation
Indices: 14963021--14963075 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 25
14963011 ATAATATTTC
14963021 TAAAAAAT-AAAACAAAAATAATAA
1 TAAAAAATAAAAACAAAAATAATAA
14963045 TAAAAAATAAAAACCTAAAAATAA-AA
1 TAAAAAATAAAAA-C-AAAAATAATAA
14963071 TAAAA
1 TAAAA
14963076 TGAAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.29
25 4 0.14
26 8 0.29
27 8 0.29
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (25 bp):
TAAAAAATAAAAACAAAAATAATAA
Found at i:14963083 original size:19 final size:19
Alignment explanation
Indices: 14963061--14963106 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
14963051 ATAAAAACCT
*
14963061 AAAAAT-AAAATAAAATGA
1 AAAAATAAAAAGAAAATGA
14963079 AAAAATAAAAAGAAAATGA
1 AAAAATAAAAAGAAAATGA
14963098 AAAAA-AAAA
1 AAAAATAAAA
14963107 CCTTGTGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.11
Consensus pattern (19 bp):
AAAAATAAAAAGAAAATGA
Found at i:14963105 original size:11 final size:10
Alignment explanation
Indices: 14963022--14963105 Score: 53
Period size: 11 Copynumber: 7.6 Consensus size: 10
14963012 TAATATTTCT
14963022 AAAAAATAAA
1 AAAAAATAAA
14963032 ACAAAAATAATA
1 A-AAAAATAA-A
*
14963044 ATAAAAA-ATA
1 A-AAAAATAAA
**
14963054 AAAACCTAAA
1 AAAAAATAAA
14963064 AATAAAATAAAA
1 AA-AAAAT-AAA
14963076 TGAAAAAATAAA
1 --AAAAAATAAA
14963088 AAGAAAATGAAA
1 AA-AAAAT-AAA
14963100 AAAAAA
1 AAAAAA
14963106 ACCTTGTGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
9 3 0.05
10 9 0.16
11 21 0.36
12 18 0.31
13 5 0.09
14 2 0.03
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.13
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:14965319 original size:5 final size:5
Alignment explanation
Indices: 14965309--14965348 Score: 53
Period size: 5 Copynumber: 7.4 Consensus size: 5
14965299 GAATTCTTAA
14965309 TTATT TTATT TTATTT TTATT TTAATGT TTATT TTATT TT
1 TTATT TTATT TTA-TT TTATT TT-AT-T TTATT TTATT TT
14965349 TTTAAATGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 20 0.62
6 9 0.28
7 3 0.09
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:14965440 original size:65 final size:57
Alignment explanation
Indices: 14965392--14965784 Score: 396
Period size: 58 Copynumber: 6.9 Consensus size: 57
14965382 AAATATATAT
*
14965392 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCTAAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAAATTCAAAAAAA
* * *
14965450 ATATTTTTGGGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAAAATTTCTAAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT---AAAA-TTCAAAAAAA
* * * * **
14965512 A-A-TTTTAAAGAAAAGTTGAAAGAATCAATTTTCC-TAAAAAAAAATT-TTAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTCAAAAAAA
* * * *
14965565 ATATTTTTGGGGGAAAGTTGAAAGTATCAATTTCCCTTAAAA-AAAATTTTAAAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAA-TTCAAAAAAA
* * *
14965622 TTATTTTTGGGGAAAA-TTGAAAGTATCAA---TCCTTGAAAATAAAATTTC-TAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAAA-TTCAAAAAAA
* *
14965676 ATA-TTTTGAGAAAAATTTGAAAGTATCAATTTTCCTTTAAAATAAAATTTCAAGAAAAA
1 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TTAAAATAAAA-TTCAA-AAAAA
*
14965735 AGTA-TTTTGAAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAATAAAATT
1 A-TATTTTTG-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATT
14965785 TCTAAAATAA
Statistics
Matches: 285, Mismatches: 30, Indels: 39
0.81 0.08 0.11
Matches are distributed among these distances:
53 21 0.07
54 27 0.09
55 41 0.14
56 20 0.07
57 35 0.12
58 47 0.16
59 9 0.03
60 45 0.16
61 29 0.10
62 11 0.04
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (57 bp):
ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTCAAAAAAA
Found at i:14965762 original size:171 final size:168
Alignment explanation
Indices: 14965394--14965800 Score: 520
Period size: 171 Copynumber: 2.4 Consensus size: 168
14965384 ATATATATAT
*
14965394 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTCTAAAAAAATATTTTTG
1 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAAATTTTAAAAAAATATTTTTG
*
14965459 GGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAAAATTTCTAAAAAAAATTTTAAAGAA
65 GGGGAAAATTGAAAGTATCAA--TTCCTTGAAAAT--AAAAATTTCTAAAAAAAATTTTAAAGAA
* *
14965524 AAGTTGAAAGAATCAATTTTCCTAAAAAAAAATTTTAAAAAAT
126 AAGTTGAAAGAATCAATTTTCCTAAAAAAAAATTTCAAAAAAA
* * *
14965567 ATTTTTGGGGGAAAGTTGAAAGTATCAATTTCCCTTAAAA-AAAATTTTAAAAAAATTATTTTT-
1 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTTTAAAAAAA-TATTTTTG
* * *
14965630 GGGGAAAATTGAAAGTATCAA-TCCTTGAAAAT-AAAATTTCTAAAAAATATTTT-GAGAAAAAT
65 GGGGAAAATTGAAAGTATCAATTCCTTGAAAATAAAAATTTCTAAAAAAAATTTTAAAG-AAAAG
* *
14965692 TTGAAAGTATCAATTTTCCTTTAAAATAAAATTTCAAGAAAAA
129 TTGAAAGAATCAATTTTCC--TAAAAAAAAATTTCAA-AAAAA
*
14965735 AGTATTTTGAAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAATAAAATTTCTAAAATAAA-ATT
1 A-T-TTTTG-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTT-TAAAA-AAATATT
14965799 TT
61 TT
14965801 AAAAAAATGC
Statistics
Matches: 207, Mismatches: 16, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
164 2 0.01
165 42 0.20
167 14 0.07
168 16 0.08
169 1 0.00
170 5 0.02
171 63 0.30
172 23 0.11
173 38 0.18
174 3 0.01
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (168 bp):
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAATTTTAAAAAAATATTTTTGG
GGGAAAATTGAAAGTATCAATTCCTTGAAAATAAAAATTTCTAAAAAAAATTTTAAAGAAAAGTT
GAAAGAATCAATTTTCCTAAAAAAAAATTTCAAAAAAA
Found at i:14965805 original size:14 final size:14
Alignment explanation
Indices: 14965773--14965804 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14965763 CAATTTTCCT
14965773 TAAAATAAAATTTC
1 TAAAATAAAATTTC
14965787 TAAAATAAAATTT-
1 TAAAATAAAATTTC
14965800 TAAAA
1 TAAAA
14965805 AAATGCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
TAAAATAAAATTTC
Found at i:14970511 original size:22 final size:23
Alignment explanation
Indices: 14970483--14970546 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 23
14970473 AATAAAACCA
**
14970483 AAAAAATAAAATAAAATGAGCT-
1 AAAAAATAAAATAAAATGAAATC
*
14970505 AAAAAATAAAATAAAATCAAATC
1 AAAAAATAAAATAAAATGAAATC
14970528 AAAAAATAAAAATAAAATG
1 AAAAAAT-AAAATAAAATG
14970547 GAAAAAGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 19 0.53
23 7 0.19
24 10 0.28
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (23 bp):
AAAAAATAAAATAAAATGAAATC
Found at i:14971427 original size:3 final size:3
Alignment explanation
Indices: 14971419--14971459 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
14971409 AGGAAAAAGG
*
14971419 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT CAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14971460 CATACTATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14971490 original size:25 final size:23
Alignment explanation
Indices: 14971447--14971504 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 23
14971437 AATAATAATA
14971447 ATAATCATAATAACATACTATATCAT
1 ATAAT-ATAATAACATACTATA-C-T
* *
14971473 ATAATATATTAATATACTATACT
1 ATAATATAATAACATACTATACT
14971496 ATAATATAA
1 ATAATATAA
14971505 ATCAAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.31
24 1 0.03
25 14 0.48
26 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (23 bp):
ATAATATAATAACATACTATACT
Found at i:14978555 original size:10 final size:11
Alignment explanation
Indices: 14978526--14978557 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
14978516 TAGCCGAATC
14978526 AAATTATTTTTG
1 AAATT-TTTTTG
14978538 AAATTTTTTTG
1 AAATTTTTTTG
14978549 AAATTTTTT
1 AAATTTTTT
14978558 CTTTTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (11 bp):
AAATTTTTTTG
Found at i:14979328 original size:98 final size:90
Alignment explanation
Indices: 14979124--14979329 Score: 207
Period size: 98 Copynumber: 2.2 Consensus size: 90
14979114 TCTAATTGAT
* * * *
14979124 ATTTTAAAAAAATTTTAAAAATAGTTTTTTTCTTACTAAACAATTGGAGGATTTTAATTTTAAAT
1 ATTTCAAATAAATTTTAAAAATAGTTTTTTTCCTACTAAACAATTGGAGAATTTTAATTTTAAAT
*
14979189 TATGAATTCTACTGAACGATTGAAA
66 TATGAATTCTACTAAACGATTGAAA
* **
14979214 ATTTTCATAATGAATTTTGAAAAATAGTTTTTTTTTTCCTACTAAATGATTGGAGAATTTTTAAT
1 A-TTTCA-AATAAATTTT-AAAAATAG---TTTTTTTCCTACTAAACAATTGGAGAA-TTTTAA-
** *
14979279 TTTTAAATTAT-AGATTCTAACTAAATTATTAGAGA
58 TTTTAAATTATGA-ATTCT-ACTAAACGATT-GAAA
14979314 ATTTCAAATAAATTTT
1 ATTTCAAATAAATTTT
14979330 TGTGAAAATT
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
90 1 0.01
91 4 0.04
92 8 0.09
93 8 0.09
96 23 0.25
97 7 0.08
98 25 0.27
99 13 0.14
100 4 0.04
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.45
Consensus pattern (90 bp):
ATTTCAAATAAATTTTAAAAATAGTTTTTTTCCTACTAAACAATTGGAGAATTTTAATTTTAAAT
TATGAATTCTACTAAACGATTGAAA
Found at i:14981069 original size:41 final size:43
Alignment explanation
Indices: 14981012--14981117 Score: 171
Period size: 41 Copynumber: 2.5 Consensus size: 43
14981002 GCCTCTGTCA
14981012 TGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTTC-CAAAGTCG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCG
*
14981053 TGGTGCCTTTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCG
1 TGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCG
* *
14981096 TTGAGCCTCTGTTTAGAGGAGC
1 TGGTGCCTCTGTTTAGAGGAGC
14981118 TTTGGTAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
41 28 0.47
42 4 0.07
43 27 0.46
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (43 bp):
TGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCG
Found at i:14981109 original size:43 final size:41
Alignment explanation
Indices: 14981016--14981117 Score: 159
Period size: 43 Copynumber: 2.4 Consensus size: 41
14981006 CTGTCATGGT
*
14981016 GCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGT
1 GCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGA
* *
14981057 GCCTTTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCAATTTAT-TTTC-CAAAGTCGTGGA
14981100 GCCTCTGTTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
14981118 TTTGGTAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 24 0.44
42 4 0.07
43 27 0.49
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (41 bp):
GCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGA
Found at i:14981130 original size:1 final size:1
Alignment explanation
Indices: 14981124--14981173 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
14981114 GAGCTTTGGT
* * * * *
14981124 AAAAAAAAAAAACAAAAACAAAAAAAACACAAAAAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14981174 TGACAATGTT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14981148 original size:17 final size:16
Alignment explanation
Indices: 14981124--14981173 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
14981114 GAGCTTTGGT
14981124 AAAAAAAAAAAAC-AA
1 AAAAAAAAAAAACAAA
* *
14981139 AAACAAAAAAAACACA
1 AAAAAAAAAAAACAAA
14981155 AAAAAAAAAAAACAAA
1 AAAAAAAAAAAACAAA
14981171 AAA
1 AAA
14981174 TGACAATGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 12 0.40
16 18 0.60
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAACAAA
Done.