Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 63 of 113
Found at i:15090973 original size:14 final size:15
Alignment explanation
Indices: 15090956--15090997 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
15090946 ACTTTTTCTC
15090956 AAAATATTT-TTTT-G
1 AAAAT-TTTATTTTAG
15090970 AAAATTTTATTTTAG
1 AAAATTTTATTTTAG
15090985 -AAATTTTATTTTA
1 AAAATTTTATTTTA
15090998 AAGAAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 3 0.12
14 22 0.85
15 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
AAAATTTTATTTTAG
Found at i:15090988 original size:71 final size:70
Alignment explanation
Indices: 15090893--15091039 Score: 258
Period size: 71 Copynumber: 2.1 Consensus size: 70
15090883 TAAAATGTAC
* * *
15090893 TTTTTTAAAATTTTATTTTTGAAATTTTATTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAA
1 TTTTTTAAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTTTTCCTCAA
15090958 AATAT
66 AATAT
15090963 TTTTTTGAAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTTTTCCTCA
1 TTTTTT-AAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTTTTCCTCA
15091028 AAATAT
65 AAATAT
15091034 TTTTTT
1 TTTTTT
15091040 TCTTGAAATT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
70 6 0.08
71 67 0.92
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.53
Consensus pattern (70 bp):
TTTTTTAAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTTTTCCTCAA
AATAT
Found at i:15091151 original size:58 final size:58
Alignment explanation
Indices: 15090961--15091330 Score: 378
Period size: 58 Copynumber: 6.3 Consensus size: 58
15090951 TTCTCAAAAT
* *
15090961 ATTTTT-TTGAAAAT-TTTATTTTAGAAATTTTATTTT-AAAGAAAATTGATACTTTCA
1 ATTTTTCTTAAAAATATTT-TTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCA
* * * * * *
15091017 ACTTTTCCTCAAAATATTTTTTTTCTTGAAATTTTATTTTAAAGGAAAATTGATACTTCCA
1 A-TTTTTCTTAAAA-ATATTTTTT-TAGAAATTTTATTTTCAAGGAAAATTGATACTTTCA
* * * *
15091078 ACTTTTCTTCAAAAATA-TTTTTTAGAAATTTTATTTTCAAGAAAAATTAATAGTTTCA
1 ATTTTTCTT-AAAAATATTTTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCA
* * *
15091136 ATTTTTTCTTGAAAATATTTTTTTA-AAATTTTATTTTCACGAAAAATTGATACTTTCA
1 A-TTTTTCTTAAAAATATTTTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCA
* *
15091194 ACTTTTCTTTAAAAATA-TCTTTTAGAAATTTTTTTATTTTCAAGGAAAATTGATACTTTCA
1 ATTTTTC-TTAAAAATATTTTTTTAGAAA---TTTTATTTTCAAGGAAAATTGATACTTTCA
* ** *
15091255 ACTTTCTCCCAAAAATATTTTTTTAG-AATTTTATTTTTAAGGAAAATTGATACTTTCA
1 A-TTTTTCTTAAAAATATTTTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCA
15091313 ACTTTTT-TTCAAAAATAT
1 A-TTTTTCTT-AAAAATAT
15091331 ATATATTTTT
Statistics
Matches: 262, Mismatches: 35, Indels: 32
0.80 0.11 0.10
Matches are distributed among these distances:
56 1 0.00
57 15 0.06
58 126 0.48
59 24 0.09
60 24 0.09
61 61 0.23
62 11 0.04
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (58 bp):
ATTTTTCTTAAAAATATTTTTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCA
Found at i:15091173 original size:132 final size:129
Alignment explanation
Indices: 15090893--15091173 Score: 275
Period size: 132 Copynumber: 2.2 Consensus size: 129
15090883 TAAAATGTAC
*
15090893 TTTTTTAAAATTTTA-TTT-TTGAAATTTTATTTTAAGGAAAATTGATACTTTCAACTTTTTCTC
1 TTTTTTAAAATTTTATTTTCTTGAAATTTTATTTTAAGGAAAATTGATACTTCCAACTTTTTCTC
* ** * ** *
15090956 AAAATATTTTTTTGAAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTT
66 AAAATATTTTTTAGAAAATTTTATTTTAGAAAAATTA-TATAAAGAAAATTGATACTTGAAAATT
** * *
15091021 TTCCTCAAAATATTTTTTTTCTTGAAATTTTATTTTAAAGGAAAATTGATACTTCCAAC-TTTTC
1 TTTTTTAAAAT-TTTATTTTCTTGAAATTTTATTTT-AAGGAAAATTGATACTTCCAACTTTTTC
***** ** *
15091085 TTCAAAAATATTTTTTAG-AAATTTTATTTTCAAGAAAAATTA-ATAGTTTCAATTTTTTCTTGA
64 -TC-AAAATATTTTTTAGAAAATTTTATTTT--AGAAAAATTATATAAAGAAAATTGATACTTGA
15091148 AAATAT
125 AAAT-T
15091154 TTTTTTAAAATTTTATTTTC
1 TTTTTTAAAATTTTATTTTC
15091174 ACGAAAAATT
Statistics
Matches: 120, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
128 8 0.07
129 3 0.03
130 3 0.03
131 20 0.17
132 56 0.47
133 22 0.18
134 8 0.07
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.52
Consensus pattern (129 bp):
TTTTTTAAAATTTTATTTTCTTGAAATTTTATTTTAAGGAAAATTGATACTTCCAACTTTTTCTC
AAAATATTTTTTAGAAAATTTTATTTTAGAAAAATTATATAAAGAAAATTGATACTTGAAAATT
Found at i:15091270 original size:177 final size:177
Alignment explanation
Indices: 15090962--15091362 Score: 469
Period size: 177 Copynumber: 2.2 Consensus size: 177
15090952 TCTCAAAATA
15090962 TTTTTTTGAAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTTTTCCTC
1 TTTTTTTGAAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTTTTCCTC
* * * *
15091027 AAAATATTTTTTTTCTTGAAATTTTATTTTAAAGGAAAATTGATACTTCCAACTTTTCTTCAAAA
66 AAAATATTATCTTTCTAGAAATTTTATTTTAAAGGAAAATTGATACTTCCAACTTTTCTCCAAAA
*
15091092 ATA-TTTTTTAGAAATTTTATTTTCAAGAAAAATTAATAGTTTCAA-T
131 ATATTTTTTTAG-AATTTTATTTTCAAGAAAAATTAATACTTTCAACT
* *
15091138 TTTTTCTTGAAAATATTT-TTTTA-AAATTTTATTTTCACGAAAAATTGATACTTTCAACTTTTC
1 TTTTT-TTGAAAAT-TTTATTTTAGAAATTTTATTTTAAAG-AAAATTGATACTTTCAACTTTTC
* * * *
15091201 TTTAAAA-A-TATCTTT-TAGAAATTTTTTTATTTTCAAGGAAAATTGATACTTTCAAC-TTTCT
63 CTCAAAATATTATCTTTCTAGAAA---TTTTATTTTAAAGGAAAATTGATACTTCCAACTTTTCT
* * *
15091262 CCCAAAAATATTTTTTTAGAATTTTATTTTTAAGGAAAATTGATACTTTCAACT
125 -CCAAAAATATTTTTTTAGAATTTTATTTTCAAGAAAAATTAATACTTTCAACT
** * *
15091316 TTTTTTCAAAAATATATATATTTTTGGAATTTTTATTTT-AAGAAAAT
1 TTTTTTTGAAAAT-T-T-TA-TTTTAGAAATTTTATTTTAAAGAAAAT
15091363 CATTTTAAAA
Statistics
Matches: 192, Mismatches: 19, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
174 5 0.03
175 5 0.03
176 25 0.13
177 116 0.60
178 18 0.09
179 1 0.01
180 5 0.03
181 6 0.03
182 11 0.06
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (177 bp):
TTTTTTTGAAAATTTTATTTTAGAAATTTTATTTTAAAGAAAATTGATACTTTCAACTTTTCCTC
AAAATATTATCTTTCTAGAAATTTTATTTTAAAGGAAAATTGATACTTCCAACTTTTCTCCAAAA
ATATTTTTTTAGAATTTTATTTTCAAGAAAAATTAATACTTTCAACT
Found at i:15091288 original size:119 final size:115
Alignment explanation
Indices: 15090979--15091330 Score: 438
Period size: 119 Copynumber: 3.0 Consensus size: 115
15090969 GAAAATTTTA
* *
15090979 TTTTAGAAATTTTATTTT-AAAGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTCT
1 TTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCC-CAAAA-ATATTTTTT-T
* * * *
15091043 TGAAATTTTATTTTAAAGGAAAATTGATACTTCCAACTTTTCTTCAAAAATATT
63 AG-AATTTTATTTTAAAGGAAAATTGATACTTTCAACTTTTCTTTAAAAATATC
* * * * *** *
15091097 TTTTAGAAATTTTATTTTCAAGAAAAATTAATAGTTTCAATTTTTTCTTGAAAATATTTTTTTAA
1 TTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCAA-CTTTTCCCAAAAATATTTTTTTAG
* * *
15091162 AATTTTATTTTCACGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATC
65 AATTTTATTTTAAAGGAAAATTGATACTTTCAACTTTTCTTTAAAAATATC
15091213 TTTTAGAAATTTTTTTATTTTCAAGGAAAATTGATACTTTCAACTTTCTCCCAAAAATATTTTTT
1 TTTTAGAAA---TTTTATTTTCAAGGAAAATTGATACTTTCAACTTT-TCCCAAAAATATTTTTT
*
15091278 TAGAATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTT-TTTCAAAAATAT
62 TAGAATTTTATTTTAAAGGAAAATTGATACTTTCAACTTTTCTTT-AAAAATAT
15091331 ATATATTTTT
Statistics
Matches: 199, Mismatches: 28, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
116 54 0.27
117 1 0.01
118 32 0.16
119 107 0.54
120 5 0.03
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.48
Consensus pattern (115 bp):
TTTTAGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTAGA
ATTTTATTTTAAAGGAAAATTGATACTTTCAACTTTTCTTTAAAAATATC
Found at i:15091391 original size:6 final size:6
Alignment explanation
Indices: 15091371--15091403 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
15091361 ATCATTTTAA
15091371 AAAAAT -AAAAT -AAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
15091404 AATTAAGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:15091444 original size:3 final size:3
Alignment explanation
Indices: 15091436--15091470 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
15091426 ATAATTTAGA
* *
15091436 AAT AAT AAT AAC AAC AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15091471 ATAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:15093771 original size:60 final size:59
Alignment explanation
Indices: 15093701--15093813 Score: 163
Period size: 60 Copynumber: 1.9 Consensus size: 59
15093691 GCTTTTGTAC
* *
15093701 AAGGAAAATTGATACTTTCAACTCCTCCTTAAAATGTTTTTCTTGATAATTTTTCCTTTT
1 AAGGAAAATTGATACTTCCAACTCCTCCTAAAAATGTTTTT-TTGATAATTTTTCCTTTT
* ** *
15093761 AAGGAAAATTGATACTTCCAAGTTTTCCTAAAAATGTTTTTTTTATAATTTTT
1 AAGGAAAATTGATACTTCCAACTCCTCCTAAAAATGTTTTTTTGATAATTTTT
15093814 ATTTTTAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
59 11 0.23
60 36 0.77
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (59 bp):
AAGGAAAATTGATACTTCCAACTCCTCCTAAAAATGTTTTTTTGATAATTTTTCCTTTT
Found at i:15093818 original size:15 final size:15
Alignment explanation
Indices: 15093800--15093833 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15093790 AAAAATGTTT
* *
15093800 TTTTTATAATTTTTA
1 TTTTTAGAAATTTTA
15093815 TTTTTAGAAATTTTA
1 TTTTTAGAAATTTTA
15093830 TTTT
1 TTTT
15093834 CAAGGAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTTTAGAAATTTTA
Found at i:15093888 original size:57 final size:56
Alignment explanation
Indices: 15093813--15093946 Score: 173
Period size: 56 Copynumber: 2.4 Consensus size: 56
15093803 TTATAATTTT
* **
15093813 TATTTTT-AGAAA-TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCAAAA
1 TATTTTTGA-AAATTTTTATTTTCAA-AAAAATTGATACTTTCAACTTTCCCTCAAAA
** *
15093869 TATTTTTTTAACTTTTTATTTTCAAAAAAATTGATACTTTCAACTTTCCCTCAAAA
1 TATTTTTGAAAATTTTTATTTTCAAAAAAATTGATACTTTCAACTTTCCCTCAAAA
*
15093925 TGTTTTTGAAAATTTTTATTTT
1 TATTTTTGAAAATTTTTATTTT
15093947 AGAAACTTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 55 0.82
57 12 0.18
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.51
Consensus pattern (56 bp):
TATTTTTGAAAATTTTTATTTTCAAAAAAATTGATACTTTCAACTTTCCCTCAAAA
Found at i:15093900 original size:74 final size:73
Alignment explanation
Indices: 15093757--15093897 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 73
15093747 TAATTTTTCC
* * * *
15093757 TTTTAAGGAAAATTGATACTTCCAAGTTTTCCTAAAAATGTTTTTTTTATAATTTTTATTTTTAG
1 TTTTAAGGAAAATTGATACTTCCAACTTTTCCTAAAAATGATTTTTTTATAATTTTTATTTTAAA
15093822 AAATTTTA
66 AAATTTTA
* * * *
15093830 TTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAT-ATTTTTTTA-ACTTTTTATTTTCA
1 TTTT-AAGGAAAATTGATACTTCCAACTTTTCCTAAAAATGATTTTTTTATAATTTTTATTTT-A
15093893 AAAAA
64 AAAAA
15093898 ATTGATACTT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
72 11 0.19
73 16 0.28
74 31 0.53
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.50
Consensus pattern (73 bp):
TTTTAAGGAAAATTGATACTTCCAACTTTTCCTAAAAATGATTTTTTTATAATTTTTATTTTAAA
AAATTTTA
Found at i:15093980 original size:127 final size:130
Alignment explanation
Indices: 15093700--15094053 Score: 405
Period size: 128 Copynumber: 2.7 Consensus size: 130
15093690 TGCTTTTGTA
* ** * * * * *
15093700 CAAGGAAAATTGATACTTTCAACTCCTCCTTAAAATGTTTTTCTTGATAATTTT-TCCTTTTAAG
1 CAAGGAAAATTGATACTTTCAATTTTTCCTAAAAATATTTTT-TT-AGAATTTTAT--TTTCAAA
* * * * *
15093764 GAAAATTGATACTTCCAAGTTTTCCTAAAAATGTTTTTTTTATAATTTTTATTTTTAGAAATTTT
62 GAAAATTGATACTTTCAACTTTTCCTAAAAATG-TTTTTTGAAAATTTTTATTTTTAGAAACTTT
15093829 ATTTT
126 ATTTT
* *
15093834 CAAGGAAAATTGATACTTTCAACTTTTT-CTCAAAATATTTTTTTA-ACTTTTTATTTTCAAA-A
1 CAAGGAAAATTGATACTTTCAA-TTTTTCCTAAAAATATTTTTTTAGA-ATTTTATTTTCAAAGA
* *
15093896 AAATTGATACTTTCAACTTTCCCTCAAAATG-TTTTTGAAAATTTTTA-TTTTAGAAACTTTATT
64 AAATTGATACTTTCAACTTTTCCTAAAAATGTTTTTTGAAAATTTTTATTTTTAGAAACTTTATT
15093959 TT
129 TT
* * *
15093961 TAAGGAAAATTGATGCTTTCAATTTTTCCCTAAAAATATTTTTTTAGAATTTTATTTTTAAAGAA
1 CAAGGAAAATTGATACTTTCAATTTTT-CCTAAAAATATTTTTTTAGAATTTTATTTTCAAAGAA
*
15094026 AATTAATACTTTCAACTTTTCCTAAAAA
65 AATTGATACTTTCAACTTTTCCTAAAAA
15094054 ATATATATAC
Statistics
Matches: 190, Mismatches: 23, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
126 5 0.03
127 37 0.19
128 42 0.22
129 28 0.15
130 28 0.15
131 6 0.03
132 5 0.03
133 3 0.02
134 34 0.18
135 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (130 bp):
CAAGGAAAATTGATACTTTCAATTTTTCCTAAAAATATTTTTTTAGAATTTTATTTTCAAAGAAA
ATTGATACTTTCAACTTTTCCTAAAAATGTTTTTTGAAAATTTTTATTTTTAGAAACTTTATTTT
Found at i:15094182 original size:7 final size:7
Alignment explanation
Indices: 15094152--15094194 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
15094142 TCTAATTTAA
15094152 AAATAAT
1 AAATAAT
15094159 -AATAAT
1 AAATAAT
*
15094165 -AATTA-
1 AAATAAT
15094170 AAATAAT
1 AAATAAT
15094177 AAATAAT
1 AAATAAT
15094184 AAATAAT
1 AAATAAT
15094191 AAAT
1 AAAT
15094195 TAAAAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 14 0.44
7 18 0.56
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AAATAAT
Found at i:15094500 original size:15 final size:15
Alignment explanation
Indices: 15094480--15094522 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
15094470 ATATGCTTTC
15094480 CTTCCCTCTCTCTCT
1 CTTCCCTCTCTCTCT
* * *
15094495 CTTCCCTTTTTTTCT
1 CTTCCCTCTCTCTCT
15094510 CTTCCCTCTCTCT
1 CTTCCCTCTCTCT
15094523 AGCAAAATCC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
CTTCCCTCTCTCTCT
Found at i:15095008 original size:3 final size:3
Alignment explanation
Indices: 15095002--15095090 Score: 55
Period size: 3 Copynumber: 30.3 Consensus size: 3
15094992 CAATCAAAAA
* *
15095002 AAT AAT AAT -AT AAAT AAT AAT -AT AAT AGT AAAT AAT AAA AAT AAAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT
* * *
15095048 AAT AA- ACA- AAA AAT AAT AA- AAC AAT AAT AAT AAA AAT AA- AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15095090 A
1 A
15095091 GAAACAAAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
2 10 0.14
3 52 0.75
4 7 0.10
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:15095035 original size:7 final size:7
Alignment explanation
Indices: 15095001--15095087 Score: 74
Period size: 7 Copynumber: 12.4 Consensus size: 7
15094991 TCAATCAAAA
15095001 AAATAAT
1 AAATAAT
15095008 AATATAA-
1 AA-ATAAT
15095015 ATAATAAT
1 A-AATAAT
*
15095023 ATAATAGT
1 A-AATAAT
15095031 AAATAAT
1 AAATAAT
15095038 AAA-AAT
1 AAATAAT
15095044 AAATAAT
1 AAATAAT
* *
15095051 AAACAAA
1 AAATAAT
15095058 AAATAAT
1 AAATAAT
*
15095065 AAAACAAT
1 -AAATAAT
15095073 -AATAAT
1 AAATAAT
15095079 AAA-AAT
1 AAATAAT
15095085 AAA
1 AAA
15095088 ATAGAAACAA
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
6 17 0.26
7 30 0.45
8 19 0.29
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.24
Consensus pattern (7 bp):
AAATAAT
Found at i:15095036 original size:27 final size:25
Alignment explanation
Indices: 15095000--15095077 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 25
15094990 ATCAATCAAA
*
15095000 AAAATAATAATATAAATAATAATATAAT
1 AAAA-AATAATA-AAATAATAATA-AAC
**
15095028 AGTAAATAATAAAAATAAATAATAAAC
1 AAAAAATAAT-AAAAT-AATAATAAAC
*
15095055 AAAAAATAATAAAACAATAATAA
1 AAAAAATAATAAAATAATAATAA
15095078 TAAAAATAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
25 8 0.19
26 4 0.10
27 20 0.48
28 10 0.24
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (25 bp):
AAAAAATAATAAAATAATAATAAAC
Found at i:15095090 original size:11 final size:11
Alignment explanation
Indices: 15095000--15095124 Score: 67
Period size: 11 Copynumber: 10.7 Consensus size: 11
15094990 ATCAATCAAA
*
15095000 AAAATAATAAT
1 AAAATAAAAAT
15095011 ATAAATAATAATAT
1 A-AAATAA-AA-AT
*
15095025 AATAGTAAATAAT
1 AA-AATAAA-AAT
15095038 AAAAATAAATAAT
1 -AAAATAAA-AAT
15095051 AAACA-AAAAAT
1 AAA-ATAAAAAT
*
15095062 AATAA-AACAAT
1 AA-AATAAAAAT
15095073 AATAATAAAAAT
1 AA-AATAAAAAT
* *
15095085 AAAATAGAAAC
1 AAAATAAAAAT
* *
15095096 AAAATTAAATT
1 AAAATAAAAAT
*
15095107 AAATTAAAAAT
1 AAAATAAAAAT
15095118 -AAATAAA
1 AAAATAAA
15095125 TAAATGGGCC
Statistics
Matches: 90, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
10 6 0.07
11 39 0.43
12 20 0.22
13 15 0.17
14 10 0.11
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:15096766 original size:14 final size:14
Alignment explanation
Indices: 15096714--15096766 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
15096704 AAAAATGTGT
15096714 AAAAAAAAGG-AAA
1 AAAAAAAAGGCAAA
15096727 AAATAAAAA-GCAAAAAA
1 AAA-AAAAAGGC---AAA
15096744 AAAAAAAAGGCAAA
1 AAAAAAAAGGCAAA
15096758 AAAAAAAAG
1 AAAAAAAAG
15096767 AGGCAAAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 4 0.12
14 17 0.50
16 5 0.15
17 8 0.24
ACGTcount: A:0.83, C:0.04, G:0.11, T:0.02
Consensus pattern (14 bp):
AAAAAAAAGGCAAA
Found at i:15096770 original size:16 final size:15
Alignment explanation
Indices: 15096714--15096773 Score: 70
Period size: 16 Copynumber: 3.9 Consensus size: 15
15096704 AAAAATGTGT
15096714 AAAAAAAAGG-AAAA
1 AAAAAAAAGGCAAAA
*
15096728 AATAAAAA-GCAAAAAA
1 AAAAAAAAGGC--AAAA
15096744 AAAAAAAAGGCAAAA
1 AAAAAAAAGGCAAAA
15096759 AAAAAAAGAGGCAAA
1 AAAAAAA-AGGCAAA
15096774 GGAGGAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
13 1 0.03
14 7 0.18
15 11 0.28
16 18 0.46
17 2 0.05
ACGTcount: A:0.80, C:0.05, G:0.13, T:0.02
Consensus pattern (15 bp):
AAAAAAAAGGCAAAA
Found at i:15098021 original size:120 final size:119
Alignment explanation
Indices: 15097777--15098036 Score: 256
Period size: 120 Copynumber: 2.2 Consensus size: 119
15097767 CGTTTTGGTT
** * * *
15097777 AGCCATCTTCGACCTCAACTC-GATCTTGGTCATTTTATCTTTAAACTCGTAATTTCATCCTAGT
1 AGCCATCTTAAACCTCGACTCAG-TCTTGGCCATTTTATCTTTAAACTCGCAATTTCATCCTAGT
* * *
15097841 CATTTAATCTCGACTCAAGCCAGATCATTTTCTTGACTTACGGATCCATCCCAATT
65 CATTCAATCTCGACTCAAGCCAGATCATTTTCTTAACTTA-GGATCCATCCCAATC
* * * *
15097897 AGCCATTTTTAACCTCGACTCAGTCTTGGCCATTTTATCTTTAAACTCGCAGTTTCATCCTGGTC
1 AGCCATCTTAAACCTCGACTCAGTCTTGGCCATTTTATCTTTAAACTCGCAATTTCATCCTAGTC
* * * * * * * * *
15097962 ATTCGATCTTGGA-TTAGGCTATATCATTTTCTTAACTT-GTGATTTCATCCTAGTC
66 ATTCAATC-TCGACTCAAGCCAGATCATTTTCTTAACTTAG-GA-TCCATCCCAATC
*
15098017 AGCCATCTTAAACCTTGACT
1 AGCCATCTTAAACCTCGACT
15098037 TGATCTTAGT
Statistics
Matches: 113, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
118 1 0.01
119 2 0.02
120 106 0.94
121 4 0.04
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.38
Consensus pattern (119 bp):
AGCCATCTTAAACCTCGACTCAGTCTTGGCCATTTTATCTTTAAACTCGCAATTTCATCCTAGTC
ATTCAATCTCGACTCAAGCCAGATCATTTTCTTAACTTAGGATCCATCCCAATC
Found at i:15098416 original size:5 final size:5
Alignment explanation
Indices: 15098406--15098520 Score: 76
Period size: 5 Copynumber: 22.8 Consensus size: 5
15098396 GTTTGTGTAT
* * * *
15098406 TTATA TTATA TGATA TTATA TTATA GTATA GTATA TTA-A -TATA GTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
* * * *
15098454 ATATA TTA-A -TATA TTATA TGATATA GTATA TTGTA TTATTA TTACCA
1 TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTA-TA TTA-TA
*
15098501 TTATTA TTTTA TTATA TTAT
1 TTA-TA TTATA TTATA TTAT
15098521 TATCATTATT
Statistics
Matches: 87, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
3 4 0.05
4 4 0.05
5 63 0.72
6 12 0.14
7 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (5 bp):
TTATA
Found at i:15098423 original size:10 final size:9
Alignment explanation
Indices: 15098407--15098529 Score: 66
Period size: 8 Copynumber: 13.9 Consensus size: 9
15098397 TTTGTGTATT
15098407 TATATTATA
1 TATATTATA
15098416 TGATATTATA
1 T-ATATTATA
*
15098426 TTATAGTATA
1 -TATATTATA
15098436 GTATATTA-A
1 -TATATTATA
*
15098445 TATAGTATAA
1 TATATTAT-A
15098455 TATATTA-A
1 TATATTATA
15098463 TATATTATA
1 TATATTATA
*
15098472 TGATA-TA-G
1 T-ATATTATA
*
15098480 TATATTGTA
1 TATATTATA
15098489 T-TATTAT-
1 TATATTATA
*
15098496 TACCATTAT-
1 TA-TATTATA
*
15098505 TATTTTAT-
1 TATATTATA
15098513 TATATTAT-
1 TATATTATA
15098521 TATCATTAT
1 TAT-ATTAT
15098530 TATTATACTT
Statistics
Matches: 90, Mismatches: 13, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
7 4 0.04
8 35 0.39
9 19 0.21
10 31 0.34
11 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (9 bp):
TATATTATA
Found at i:15098477 original size:18 final size:18
Alignment explanation
Indices: 15098407--15098477 Score: 74
Period size: 18 Copynumber: 3.8 Consensus size: 18
15098397 TTTGTGTATT
*
15098407 TATATTATATGATATTATA
1 TATAGTATATGATATTA-A
15098426 TTATAGTATA-GTATATTAA
1 -TATAGTATATG-ATATTAA
15098445 TATAGTATAAT-ATATTAA
1 TATAGTAT-ATGATATTAA
*
15098463 TATATTATATGATAT
1 TATAGTATATGATAT
15098478 AGTATATTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
17 2 0.04
18 26 0.58
19 3 0.07
20 14 0.31
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (18 bp):
TATAGTATATGATATTAA
Found at i:15098495 original size:3 final size:3
Alignment explanation
Indices: 15098487--15098535 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
15098477 TAGTATATTG
* * *
15098487 TAT TAT TAT TAC CAT TAT TAT T-T TAT TA- TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15098533 TAT
1 TAT
15098536 ACTTTACTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:15098531 original size:28 final size:28
Alignment explanation
Indices: 15098482--15098535 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
15098472 TGATATAGTA
* *
15098482 TATTGTATTATTATTACCATTATTATTT
1 TATTATATTATTATCACCATTATTATTT
**
15098510 TATTATATTATTATCATTATTATTAT
1 TATTATATTATTATCACCATTATTAT
15098536 ACTTTACTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (28 bp):
TATTATATTATTATCACCATTATTATTT
Found at i:15099473 original size:19 final size:19
Alignment explanation
Indices: 15099449--15099511 Score: 92
Period size: 19 Copynumber: 3.3 Consensus size: 19
15099439 GATAACAAGG
15099449 TTTTATTTTTTCATTTTAT
1 TTTTATTTTTTCATTTTAT
15099468 TTTTATTTTTTCATTTTA-
1 TTTTATTTTTTCATTTTAT
*
15099486 TTTTATTTTAGCTCATTTTAT
1 TTTTATTTT--TTCATTTTAT
15099507 TTTTA
1 TTTTA
15099512 GGTTTTTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
18 9 0.22
19 18 0.45
20 8 0.20
21 5 0.12
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTTATTTTTTCATTTTAT
Found at i:15099506 original size:39 final size:38
Alignment explanation
Indices: 15099459--15099532 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 38
15099449 TTTTATTTTT
* *
15099459 TCATTTTATTTTTA-TTTTTTCATTTTATTTTATTTTAGC
1 TCATTTTATTTTTAGGTTTTT-ATTTT-TTATATTTTAGC
15099498 TCATTTTATTTTTAGGTTTTTATTTTTTATATTTT
1 TCATTTTATTTTTAGGTTTTTATTTTTTATATTTT
15099533 TTTTGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
38 8 0.25
39 19 0.59
40 5 0.16
ACGTcount: A:0.18, C:0.05, G:0.04, T:0.73
Consensus pattern (38 bp):
TCATTTTATTTTTAGGTTTTTATTTTTTATATTTTAGC
Found at i:15099576 original size:17 final size:19
Alignment explanation
Indices: 15099541--15099578 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15099531 TTTTTTGGTT
*
15099541 TTATTTTTTAGAAATATTA
1 TTATTTTGTAGAAATATTA
15099560 TTATTTTGTA-AAA-ATTA
1 TTATTTTGTAGAAATATTA
15099577 TT
1 TT
15099579 TTTGTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATTTTGTAGAAATATTA
Found at i:15103128 original size:18 final size:18
Alignment explanation
Indices: 15103105--15103141 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15103095 AAATATCGAT
*
15103105 AATTAATAATTACCAATA
1 AATTAATAATAACCAATA
*
15103123 AATTAATCATAACCAATA
1 AATTAATAATAACCAATA
15103141 A
1 A
15103142 TAAAAAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.30
Consensus pattern (18 bp):
AATTAATAATAACCAATA
Found at i:15103168 original size:20 final size:19
Alignment explanation
Indices: 15103138--15103177 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
15103128 ATCATAACCA
*
15103138 ATAATAAAAAATAATAATT
1 ATAATAAAAAAAAATAATT
15103157 ATAATAATAAAAAAATAATT
1 ATAATAA-AAAAAAATAATT
15103177 A
1 A
15103178 AATTTACCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAATAAAAAAAAATAATT
Found at i:15103325 original size:18 final size:19
Alignment explanation
Indices: 15103302--15103337 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
15103292 ATATAGTAAT
15103302 AATAAATAAAAAT-ATAAA
1 AATAAATAAAAATGATAAA
15103320 AATAAATAAAAATGATAA
1 AATAAATAAAAATGATAA
15103338 TATAAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (19 bp):
AATAAATAAAAATGATAAA
Found at i:15103342 original size:18 final size:17
Alignment explanation
Indices: 15103298--15103344 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
15103288 ATATATATAG
15103298 TAATAATAAATAAAAATA
1 TAAT-ATAAATAAAAATA
*
15103316 TAAAAATAAATAAAAATGA
1 T-AATATAAATAAAAAT-A
15103335 TAATATAAAT
1 TAATATAAAT
15103345 TGTTTCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (17 bp):
TAATATAAATAAAAATA
Found at i:15108765 original size:15 final size:15
Alignment explanation
Indices: 15108745--15108773 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15108735 CAGATTGTCA
15108745 TTATTTGTTAATTTG
1 TTATTTGTTAATTTG
15108760 TTATTTGTTAATTT
1 TTATTTGTTAATTT
15108774 TATTTATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (15 bp):
TTATTTGTTAATTTG
Found at i:15108800 original size:20 final size:20
Alignment explanation
Indices: 15108752--15108797 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
15108742 TCATTATTTG
*
15108752 TTAATTTGTTATTTGTTAAT
1 TTAATTTATTATTTGTTAAT
*
15108772 TTTATTTATTATTT-TTAAT
1 TTAATTTATTATTTGTTAAT
15108791 TTAATTT
1 TTAATTT
15108798 TATGCATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (20 bp):
TTAATTTATTATTTGTTAAT
Found at i:15109103 original size:4 final size:4
Alignment explanation
Indices: 15109094--15109118 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15109084 TATTTTATGT
15109094 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
15109119 CGATTTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:15109991 original size:14 final size:14
Alignment explanation
Indices: 15109950--15109991 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
15109940 TAAAAAAGAT
*
15109950 TTTTTTTGAAAGAAA
1 TTTTTTTGAAA-ATA
15109965 TTTTTTT-ATAAATA
1 TTTTTTTGA-AAATA
15109979 TTTTTTTGAAAAT
1 TTTTTTTGAAAAT
15109992 TTAAAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
TTTTTTTGAAAATA
Found at i:15111857 original size:21 final size:22
Alignment explanation
Indices: 15111822--15111867 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
15111812 TCTTTGAACT
15111822 TTTGAATTCTCAAATGAGAATC
1 TTTGAATTCTCAAATGAGAATC
15111844 TTTGAATT-TCAAATGAGAATC
1 TTTGAATTCTCAAATGAGAATC
15111865 TTT
1 TTT
15111868 AAGATGTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (22 bp):
TTTGAATTCTCAAATGAGAATC
Found at i:15112459 original size:42 final size:41
Alignment explanation
Indices: 15112272--15112603 Score: 228
Period size: 41 Copynumber: 8.1 Consensus size: 41
15112262 ATTTTCGATG
* * * *
15112272 AGCATTTATTTTTT-AAAGTTGTTGAGTCTCTGCTCAGA-A
1 AGCATTTATTTTTTCAAAGTTGTTAAGCCTCTGTTTAGAGA
* ** * * *
15112311 GAGCTTTTA-TTTTTCAAAAGTCATTAAGCCTTTGATTAGAGG
1 -AGCATTTATTTTTTC-AAAGTTGTTAAGCCTCTGTTTAGAGA
* * * ** * *
15112353 AGC-TTTATTTATT-GAAGTTGTTAAGCCTTTAATTAGTGG
1 AGCATTTATTTTTTCAAAGTTGTTAAGCCTCTGTTTAGAGA
* *
15112392 AGCCTTTA-TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGA
1 AGCATTTATTTTTTCAAAGTTGTTAAGCCTCTGTTTAGAGA
* * * *
15112432 AGCCTTTATTTTTTTCAAAGTTGTTGAGCCTCTATTTAGAGG
1 AGCATTTA-TTTTTTCAAAGTTGTTAAGCCTCTGTTTAGAGA
* * * *
15112474 AGCATTTATTTTTCCAAAGTTGTTAAGCATTTATTTAGAGGA
1 AGCATTTATTTTTTCAAAGTTGTTAAGCCTCTGTTTAGA-GA
* ** * * *
15112516 A-CATTTATTTTTCCAAAGTCATTTAGCCTATGTTTAGAGG
1 AGCATTTATTTTTTCAAAGTTGTTAAGCCTCTGTTTAGAGA
* *
15112556 AGCTTAGTTTATTTTTTTGAAAGTTGTTAAGCCTCTGTTTAAAGA
1 AGC--A-TTTA-TTTTTTCAAAGTTGTTAAGCCTCTGTTTAGAGA
15112601 AGC
1 AGC
15112604 TTTGTTTACT
Statistics
Matches: 232, Mismatches: 46, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
39 33 0.14
40 44 0.19
41 83 0.36
42 39 0.17
43 1 0.00
44 4 0.02
45 28 0.12
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.43
Consensus pattern (41 bp):
AGCATTTATTTTTTCAAAGTTGTTAAGCCTCTGTTTAGAGA
Found at i:15112579 original size:45 final size:45
Alignment explanation
Indices: 15112530--15112617 Score: 104
Period size: 45 Copynumber: 2.0 Consensus size: 45
15112520 TTATTTTTCC
* * * *
15112530 AAAGTCATTTAGCCTATGTTTAGAGGAGCTTAGTTTATTTTTTTG
1 AAAGTCATTAAGCCTATGTTTAAAGAAGCTTAGTTTACTTTTTTG
** * *
15112575 AAAGTTGTTAAGCCTCTGTTTAAAGAAGCTTTGTTTACTTTTT
1 AAAGTCATTAAGCCTATGTTTAAAGAAGCTTAGTTTACTTTTT
15112618 CAAAGTTATG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.47
Consensus pattern (45 bp):
AAAGTCATTAAGCCTATGTTTAAAGAAGCTTAGTTTACTTTTTTG
Found at i:15113553 original size:21 final size:21
Alignment explanation
Indices: 15113500--15113553 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
15113490 ATTTTGATAA
15113500 TTTTTTTATTTTTTTAAATTT
1 TTTTTTTATTTTTTTAAATTT
*** *
15113521 TAAATTTATTTTTTTAAGTTT
1 TTTTTTTATTTTTTTAAATTT
15113542 TTTTTTT-TTTTT
1 TTTTTTTATTTTT
15113554 GCATGAATAA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTTTTTATTTTTTTAAATTT
Found at i:15113885 original size:26 final size:27
Alignment explanation
Indices: 15113856--15113911 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
15113846 AAGGATAAGA
* * *
15113856 TCTTTAGAAATTTC-AAATGATAAATT
1 TCTTAAGAAATCTCTAAATGACAAATT
*
15113882 TCTTAAGAAATCTCTAAGTGACAAATT
1 TCTTAAGAAATCTCTAAATGACAAATT
15113909 TCT
1 TCT
15113912 CTAAATTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (27 bp):
TCTTAAGAAATCTCTAAATGACAAATT
Found at i:15118017 original size:11 final size:10
Alignment explanation
Indices: 15117986--15118020 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
15117976 TTTTATCTTT
15117986 AAATAAATTA
1 AAATAAATTA
*
15117996 AAATAATTTA
1 AAATAAATTA
15118006 AAGATAAATTA
1 AA-ATAAATTA
15118017 AAAT
1 AAAT
15118021 TTCAGCCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (10 bp):
AAATAAATTA
Found at i:15120979 original size:111 final size:113
Alignment explanation
Indices: 15120772--15121088 Score: 335
Period size: 111 Copynumber: 2.7 Consensus size: 113
15120762 TTTTTCAATG
* *
15120772 ATTTTCTTAAAATAAAAATTTTTAAAAAAAGTATTTTTGAGAAAAAGTTGAAAGTATCAATTTTT
1 ATTTTCTTAAAAT-AAAACTTTTCAAAAAAGTATTTTTGAGAAAAAGTTGAAAGTATCAATTTTT
* *
15120837 CTTGAAAATAAAGATTTCAAAATAGTGATTTTT-G-A-G-GAAAAGTATCA
65 CTTGAAAATAAA-ATTTCAAAAAAGTCATTTTTAGAATGTG-AAAGTATCA
* *
15120884 ATTTTCCTTAAAAATAAAA-TTTTCAAAAAA-TATTTTT-AAAGAAAAGTTGAAAGTATCAAATT
1 ATTTT-CTT-AAAATAAAACTTTTCAAAAAAGTATTTTTGAGA-AAAAGTTGAAAGTATCAATTT
15120946 TTCTTGAAAATAAAATTCTCAAAAAAAG-CATTTTTAAGAAAATGTTGAAAGTATCA
63 TTCTTGAAAATAAAATT-TC-AAAAAAGTCATTTTT-AG--AATG-TGAAAGTATCA
*
15121002 ATTTTTCTTGAAAATAAAACTTTTCAAAAAAAAAAAAGCATTTTTGAGAAAAAGTTGAAAGTATC
1 A-TTTTCTT-AAAATAAAACTTTTC------AAAAAAGTATTTTTGAGAAAAAGTTGAAAGTATC
15121067 AATTTTTCTTGAAAATAAAATT
58 AATTTTTCTTGAAAATAAAATT
15121089 GCTTTAAGAA
Statistics
Matches: 173, Mismatches: 9, Indels: 32
0.81 0.04 0.15
Matches are distributed among these distances:
110 5 0.03
111 49 0.28
112 21 0.12
113 8 0.05
114 5 0.03
116 1 0.01
117 1 0.01
118 22 0.13
119 10 0.06
125 6 0.03
126 43 0.25
127 2 0.01
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (113 bp):
ATTTTCTTAAAATAAAACTTTTCAAAAAAGTATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
TTGAAAATAAAATTTCAAAAAAGTCATTTTTAGAATGTGAAAGTATCA
Found at i:15121101 original size:66 final size:64
Alignment explanation
Indices: 15120875--15121101 Score: 235
Period size: 66 Copynumber: 3.7 Consensus size: 64
15120865 TTTTTGAGGA
* * * *
15120875 AAAGTATCAATTTTCCTTAAAAATAAAA-T-TTT---CAAAAAA-TATTTTTAA-AGAAAAGTTG
1 AAAGTATCAATTTTTCTTGAAAATAAAATTCTTTAAAAAAAAAAGCATTTTTAAGA-AAAAGTTG
* * *
15120933 AAAGTATCAAATTTTCTTGAAAATAAAATTC--T--CAAAAAAAGCATTTTTAAGAAAATGTTG
1 AAAGTATCAATTTTTCTTGAAAATAAAATTCTTTAAAAAAAAAAGCATTTTTAAGAAAAAGTTG
* *
15120993 AAAGTATCAATTTTTCTTGAAAATAAAACTT-TTCAAAAAAAAAAAAGCATTTTTGAGAAAAAGT
1 AAAGTATCAATTTTTCTTGAAAATAAAA-TTCTT--TAAAAAAAAAAGCATTTTTAAGAAAAAGT
15121057 TG
63 TG
*
15121059 AAAGTATCAATTTTTCTTGAAAATAAAATTGCTTTAAGAAAAA
1 AAAGTATCAATTTTTCTTGAAAATAAAATT-CTTTAAAAAAAA
15121102 CTTGAAAGTA
Statistics
Matches: 142, Mismatches: 13, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
58 26 0.18
59 7 0.05
60 42 0.30
61 3 0.02
65 9 0.06
66 53 0.37
67 2 0.01
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.34
Consensus pattern (64 bp):
AAAGTATCAATTTTTCTTGAAAATAAAATTCTTTAAAAAAAAAAGCATTTTTAAGAAAAAGTTG
Found at i:15122505 original size:59 final size:57
Alignment explanation
Indices: 15122442--15122860 Score: 418
Period size: 59 Copynumber: 7.1 Consensus size: 57
15122432 TTTTTCAATG
* * * *
15122442 ATTTTCTT-AAAATGAAAATTAAAAAAAAAAGTAGTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTCTTGAAAAT-AAAATT-TACAAAAAAGCA-TTTTAAGGAAAAGTTGAAAGTATCA
* * *
15122501 ATTTTCCTTAAAAATAAAGATTT-CAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTT-CTTGAAAATAAA-ATTTACAAAAAAGCA-TTTTAAGGAAAAGTTGAAAGTATCA
* * * *
15122560 ATTTTTTTTTGAAAATAAAATTTTCAAAAAA-CATTTTTAAGGAAAAATTGAAAATATCA
1 A--TTTTCTTGAAAATAAAATTTACAAAAAAGCA-TTTTAAGGAAAAGTTGAAAGTATCA
* * *
15122619 ATTTTCCTTGAAAATAAAATTTTCAAAAAAGCATTTTTAAGGAAAAGTTAAAAATATCA
1 ATTTT-CTTGAAAATAAAATTTACAAAAAAGCA-TTTTAAGGAAAAGTTGAAAGTATCA
* * *
15122678 ATTTTCCTTGAAAGTAAAATTCT-CAAAAAAGGTATTTTTAAGAAAAAGTTGAAAGTATCA
1 ATTTT-CTTGAAAATAAAATT-TACAAAAAA-GCA-TTTTAAGGAAAAGTTGAAAGTATCA
**
15122738 ATTTT-TTTTAAATAAAATTTTCACAAAAAAGCATTTTAAGGAAAAAGTTGAAAGTATCAA
1 ATTTTCTTGAAAATAAAA-TTT-ACAAAAAAGCATTTTAAGG-AAAAGTTGAAAGTATC-A
* * *
15122798 ATTTCCTTGAAAA-AAAATTTTCAAAAAAGCATCTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTCTTGAAAATAAAATTTACAAAAAAGCAT-TTTAAGGAAAAGTTGAAAGTATCA
15122855 ATTTTC
1 ATTTTC
15122861 CTTCCATAAA
Statistics
Matches: 314, Mismatches: 29, Indels: 36
0.83 0.08 0.09
Matches are distributed among these distances:
57 10 0.03
58 67 0.21
59 150 0.48
60 70 0.22
61 17 0.05
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (57 bp):
ATTTTCTTGAAAATAAAATTTACAAAAAAGCATTTTAAGGAAAAGTTGAAAGTATCA
Found at i:15122603 original size:118 final size:118
Alignment explanation
Indices: 15122466--15122863 Score: 511
Period size: 118 Copynumber: 3.4 Consensus size: 118
15122456 AAAATTAAAA
* * *
15122466 AAAAAAGTAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGA-TTTCAAAAA
1 AAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-ATTTTCAAAAA
* * **
15122530 AGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTTGAAAATAAAATTTTC
65 AGCATTTTTAAGGAAAAGTTGAAAGTATCAA-TTTTCCTTGAAAATAAAATTTTC
* * *
15122585 AAAAAA-CATTTTTAAGGAAAAATTGAAAATATCAATTTTCCTTGAAAATAAAATTTTCAAAAAA
1 AAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTCAAAAAA
* * * *
15122649 GCATTTTTAAGGAAAAGTTAAAAATATCAATTTTCCTTGAAAGTAAAATTCTC
66 GCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC
* * **
15122702 AAAAAAGGTATTTTTAAGAAAAAGTTGAAAGTATCAATTTT--TTTTAAATAAAATTTTCACAAA
1 AAAAAA-GCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTT--CAAA
*
15122765 AAAGCA-TTTTAAGGAAAAAGTTGAAAGTATCAAATTTCCTTGAAAA-AAAATTTTC
63 AAAGCATTTTTAAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC
* *
15122820 AAAAAAGCATCTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
15122864 CCATAAAGGC
Statistics
Matches: 242, Mismatches: 29, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
117 70 0.29
118 98 0.40
119 74 0.31
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (118 bp):
AAAAAAGCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTCAAAAAA
GCATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC
Found at i:15122641 original size:18 final size:19
Alignment explanation
Indices: 15122607--15122642 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15122597 TAAGGAAAAA
*
15122607 TTGAAAATATCAATTTTCC
1 TTGAAAATATAAATTTTCC
15122626 TTGAAAATA-AAATTTTC
1 TTGAAAATATAAATTTTC
15122643 AAAAAAGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (19 bp):
TTGAAAATATAAATTTTCC
Found at i:15122767 original size:177 final size:176
Alignment explanation
Indices: 15122466--15122863 Score: 590
Period size: 177 Copynumber: 2.2 Consensus size: 176
15122456 AAAATTAAAA
* *
15122466 AAAAAAGTAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGATTTCAAAAAA
1 AAAAAAGCATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGATTTCAAAAAA
* *
15122531 GGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTTGAAAATAAAATTTTCAAAAAA-CATT
66 GGATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTTT-AAAATAAAATTTTCAAAAAAGCA-T
*
15122595 TTTAAGGAAAAA-TTGAAAATATCAATTTTCCTTGAAAATAAAATTTTC
129 TTTAAGGAAAAAGTTGAAAATATCAAATTTCCTTGAAAA-AAAATTTTC
* * * * *
15122643 AAAAAAGCATTTTTAAGGAAAAGTTAAAAATATCAATTTTCCTTGAAAGTAAA-ATTCTCAAAAA
1 AAAAAAGCATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGATT-TCAAAAA
15122707 AGGTATTTTTAAGAAAAAGTTGAAAGTATCAA-TTTTTTTT-AAATAAAATTTTCACAAAAAAGC
65 AGG-ATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTTTAAAATAAAATTTT--CAAAAAAGC
*
15122770 ATTTTAAGGAAAAAGTTGAAAGTATCAAATTTCCTTGAAAAAAAATTTTC
127 ATTTTAAGGAAAAAGTTGAAAATATCAAATTTCCTTGAAAAAAAATTTTC
*
15122820 AAAAAAGCATCTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAAAGCATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
15122864 CCATAAAGGC
Statistics
Matches: 200, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
175 12 0.06
176 3 0.01
177 133 0.67
178 52 0.26
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (176 bp):
AAAAAAGCATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGATTTCAAAAAA
GGATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTTTTTAAAATAAAATTTTCAAAAAAGCATTT
TAAGGAAAAAGTTGAAAATATCAAATTTCCTTGAAAAAAAATTTTC
Found at i:15123907 original size:23 final size:22
Alignment explanation
Indices: 15123865--15123906 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
15123855 GATTCATTCT
15123865 TTTATTATGTATAATGTTTTAA
1 TTTATTATGTATAATGTTTTAA
*
15123887 TTTATTTATTTAT-ATGTTTT
1 TTTA-TTATGTATAATGTTTT
15123907 TTCTTATCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTATTATGTATAATGTTTTAA
Found at i:15133487 original size:57 final size:55
Alignment explanation
Indices: 15133400--15133579 Score: 159
Period size: 57 Copynumber: 3.1 Consensus size: 55
15133390 TATTTTTCTT
*
15133400 AACAAA-AAATAAA-AGCTTAAATTGAAAACCCGTAAAAGGCAGTTTGAATTCAAAAA
1 AACAAAGAAA-AAAGAGCTCAAATTGAAAACCCGTAAAAGGCAGTTT-AATT-AAAAA
* * **
15133456 AACAAAGAAAAAAGAGCTCAAATTGAAAACCCATAAAGCGTGGTTTCAGTTTAAAAAAAAA
1 AACAAAGAAAAAAGAGCTCAAATTGAAAACCCGTAAA---AGG---CAGTTTAATTAAAAA
* * * *
15133517 AACAAAAAGAAAAAGAGCTCAAATTGAAAACCTGTAAAGGGGAGTTTAAATTAAAAA
1 AACAAAGA-AAAAAGAGCTCAAATTGAAAACCCGTAAAAGGCAGTTT-AATTAAAAA
15133574 AA-AAAG
1 AACAAAG
15133580 TGATTAAACT
Statistics
Matches: 101, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
56 17 0.17
57 33 0.33
59 2 0.02
60 2 0.02
61 12 0.12
62 29 0.29
63 6 0.06
ACGTcount: A:0.56, C:0.11, G:0.15, T:0.18
Consensus pattern (55 bp):
AACAAAGAAAAAAGAGCTCAAATTGAAAACCCGTAAAAGGCAGTTTAATTAAAAA
Found at i:15133574 original size:62 final size:61
Alignment explanation
Indices: 15133451--15133578 Score: 168
Period size: 62 Copynumber: 2.1 Consensus size: 61
15133441 GTTTGAATTC
* * * * *
15133451 AAAAAAACAAAGAAAAAAGAGCTCAAATTGAAAACCCATAAAGCGTGGTTTCAGTTTAAAA
1 AAAAAAACAAAAAAAAAAGAGCTCAAATTGAAAACCCATAAAGCGGGGTTTAAATTAAAAA
**
15133512 AAAAAAACAAAAAGAAAAAGAGCTCAAATTGAAAACCTGTAAAG-GGGAGTTTAAATTAAAAA
1 AAAAAAACAAAAA-AAAAAGAGCTCAAATTGAAAACCCATAAAGCGGG-GTTTAAATTAAAAA
15133574 AAAAA
1 AAAAA
15133579 GTGATTAAAC
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
61 14 0.24
62 44 0.76
ACGTcount: A:0.59, C:0.10, G:0.15, T:0.16
Consensus pattern (61 bp):
AAAAAAACAAAAAAAAAAGAGCTCAAATTGAAAACCCATAAAGCGGGGTTTAAATTAAAAA
Found at i:15134804 original size:85 final size:85
Alignment explanation
Indices: 15134653--15135098 Score: 366
Period size: 85 Copynumber: 5.2 Consensus size: 85
15134643 TCTTCTTTAG
* * * * *
15134653 TTATTTTAGACTTCGGTTCTATCTAGGTCATTTTGTTTCAAATTT-TGACATTTGTCAAATCCTT
1 TTATTTTAGACTTCGGTTCCATCTAGGTCATTTTGTTTTAAATTTGT-ACCTATGCCAAATCCTT
*
15134717 CTTCAGCTTAGTCTAAGTTAT
65 CTTCAGTTTAGTCTAAGTTAT
* * * * *
15134738 TCATTTTAGACTTCGATTCCATCTAGGTCATCTTGTTTTAAATTTGTACCTATGCCAGATCTTTC
1 TTATTTTAGACTTCGGTTCCATCTAGGTCATTTTGTTTTAAATTTGTACCTATGCCAAATCCTTC
*
15134803 TTC-GATTCAGTCTAAGTTAT
66 TTCAG-TTTAGTCTAAGTTAT
* * * * ** *
15134823 TTATTTCAGACTTTGGTTTCATCTAGGTTATTTTGTTTTGGATCTAG-ACCTATGCCAAATCCTT
1 TTATTTTAGACTTCGGTTCCATCTAGGTCATTTTGTTTTAAAT-TTGTACCTATGCCAAATCCTT
* *
15134887 ATT-TGATTTAGTCTAAGTTAT
65 CTTCAG-TTTAGTCTAAGTTAT
** * * * ** *
15134908 TTATTTTTAGACTTTAGTTCCATCCAGGTCATTTCGTTTTGAATTTCAACCTATGCCAGATCCTT
1 TTA-TTTTAGACTTCGGTTCCATCTAGGTCATTTTGTTTTAAATTTGTACCTATGCCAAATCCTT
* *
15134973 CTT-TGATTTAGTCTAAGTTAC
65 CTTCAG-TTTAGTCTAAGTTAT
* * * * * * * *
15134994 TTATTTTTAGACTTCGGTTCCATCCAAGCCATTCTGTTTTGAATTTCAGT--TTATGCAAAATTC
1 TTA-TTTTAGACTTCGGTTCCATCTAGGTCATTTTGTTTTAAATTT--GTACCTATGCCAAATCC
* * * *
15135057 TTCTTTAATCTGGTCTAAGTTAT
63 TTCTTCAGTTTAGTCTAAGTTAT
*
15135080 TTATTTTAGACTTCAGTTC
1 TTATTTTAGACTTCGGTTC
15135099 AATCCAAGTA
Statistics
Matches: 296, Mismatches: 56, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
84 1 0.00
85 155 0.52
86 140 0.47
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.47
Consensus pattern (85 bp):
TTATTTTAGACTTCGGTTCCATCTAGGTCATTTTGTTTTAAATTTGTACCTATGCCAAATCCTTC
TTCAGTTTAGTCTAAGTTAT
Found at i:15135089 original size:171 final size:170
Alignment explanation
Indices: 15134725--15135104 Score: 424
Period size: 171 Copynumber: 2.2 Consensus size: 170
15134715 TTCTTCAGCT
* * * **
15134725 TAGTCTAAGTTATTCATTTTAGAC-TTCGATTCCATCTAGGTCATCTTGTTTTAAATTTGTACCT
1 TAGTCTAAGTTATTTATTTTAGACTTTAG-TTCCATCCAGGTCATCTTGTTTTAAATTTCAACCT
* * * * * * **
15134789 ATGCCAGATCTTTCTTCGATTCAGTCTAAGTTATTTATTTCAGACTTTGGTTTCATCTAGGTTAT
65 ATGCCAGATCCTTCTTCGATTCAGTCTAAGTTACTTATTTCAGACTTCGGTTCCATCCAAGCCAT
* * * * *
15134854 TTTGTTTTGGATCTAGACCTATGCCAAATCCTTATTTGATT
130 TCTGTTTTGAATCTAGACCTATGCAAAATCCTTATTTAATC
*
15134895 TAGTCTAAGTTATTTATTTTTAGACTTTAGTTCCATCCAGGTCAT-TTCGTTTTGAATTTCAACC
1 TAGTCTAAGTTATTTA-TTTTAGACTTTAGTTCCATCCAGGTCATCTT-GTTTTAAATTTCAACC
* * *
15134959 TATGCCAGATCCTTCTTTGATTTAGTCTAAGTTACTTATTTTTAGACTTCGGTTCCATCCAAGCC
64 TATGCCAGATCCTTCTTCGATTCAGTCTAAGTTACTTA-TTTCAGACTTCGGTTCCATCCAAGCC
* ** * *
15135024 ATTCTGTTTTGAATTTCAG-TTTATGCAAAATTCTTCTTTAATC
128 ATTCTGTTTTGAATCT-AGACCTATGCAAAATCCTTATTTAATC
* * *
15135067 TGGTCTAAGTTATTTATTTTAGACTTCAGTTCAATCCA
1 TAGTCTAAGTTATTTATTTTAGACTTTAGTTCCATCCA
15135105 AGTAATTACA
Statistics
Matches: 175, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
170 17 0.10
171 89 0.51
172 67 0.38
173 2 0.01
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (170 bp):
TAGTCTAAGTTATTTATTTTAGACTTTAGTTCCATCCAGGTCATCTTGTTTTAAATTTCAACCTA
TGCCAGATCCTTCTTCGATTCAGTCTAAGTTACTTATTTCAGACTTCGGTTCCATCCAAGCCATT
CTGTTTTGAATCTAGACCTATGCAAAATCCTTATTTAATC
Found at i:15136151 original size:3 final size:3
Alignment explanation
Indices: 15136145--15136191 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
15136135 ATTATTATTA
*
15136145 TTG TTG TTG TTG TTG TTG TT- TTG TTG CTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
15136192 CTTATTTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.00, C:0.02, G:0.32, T:0.66
Consensus pattern (3 bp):
TTG
Found at i:15136433 original size:118 final size:120
Alignment explanation
Indices: 15136262--15136504 Score: 359
Period size: 118 Copynumber: 2.0 Consensus size: 120
15136252 TTTTCAATGA
* * *
15136262 TTTTCTTAAAATAAAAATTTTCAAAAAGAAAAGTATTTTTAAGGAAAAGTTGAAAGTATCAATTT
1 TTTTCTTAAAATAAAAATTTTC--AAAGAAAAGCATTTTTAAGAAAAAGTTGAAAGCATCAATTT
*
15136327 TCCTTGAAAATAAAATTTTCAAAAAA-TATTTTTAAGGAAAAGTTGAAAGTATCAAT
64 TCCTTGAAAATAAAATTTTCAAAAAAGTATTTTTAAGAAAAAGTTGAAAGTATCAAT
15136383 TTTTCTTGAAAAT-AAAATTTTC-AAGAAAAGGCATTTTT-AGAAAAAGTTGAAAGCATCAATTT
1 TTTTCTT-AAAATAAAAATTTTCAAAGAAAA-GCATTTTTAAGAAAAAGTTGAAAGCATCAATTT
* * *
15136445 TTCTTGAAAATAAAATTTTTAAAAAAGTATTTTTGAGAAAAAGTTGAAAGTATCAAT
64 TCCTTGAAAATAAAATTTTCAAAAAAGTATTTTTAAGAAAAAGTTGAAAGTATCAAT
15136502 TTT
1 TTT
15136505 CCTTCCATAA
Statistics
Matches: 112, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
118 53 0.47
119 38 0.34
121 16 0.14
122 5 0.04
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.37
Consensus pattern (120 bp):
TTTTCTTAAAATAAAAATTTTCAAAGAAAAGCATTTTTAAGAAAAAGTTGAAAGCATCAATTTTC
CTTGAAAATAAAATTTTCAAAAAAGTATTTTTAAGAAAAAGTTGAAAGTATCAAT
Found at i:15136500 original size:59 final size:59
Alignment explanation
Indices: 15136262--15136504 Score: 339
Period size: 58 Copynumber: 4.1 Consensus size: 59
15136252 TTTTCAATGA
*
15136262 TTTTCTT-AAAATAAAAATTTTCAAAAAGAAAAGTATTTTTAAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTGAAAAT-AAAATTTTC---AA-AAAAGTATTTTTAAGAAAAAGTTGAAAGTATCAAT
* *
15136325 TTTCCTTGAAAATAAAATTTTCAAAAAA-TATTTTTAAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTGAAAATAAAATTTTCAAAAAAGTATTTTTAAGAAAAAGTTGAAAGTATCAAT
* *
15136383 TTTTCTTGAAAATAAAATTTTCAAGAAAAGGCATTTTT-AGAAAAAGTTGAAAGCATCAAT
1 TTTTCTTGAAAATAAAATTTTCAA-AAAA-GTATTTTTAAGAAAAAGTTGAAAGTATCAAT
* *
15136443 TTTTCTTGAAAATAAAATTTTTAAAAAAGTATTTTTGAGAAAAAGTTGAAAGTATCAAT
1 TTTTCTTGAAAATAAAATTTTCAAAAAAGTATTTTTAAGAAAAAGTTGAAAGTATCAAT
15136502 TTT
1 TTT
15136505 CCTTCCATAA
Statistics
Matches: 167, Mismatches: 8, Indels: 14
0.88 0.04 0.07
Matches are distributed among these distances:
58 60 0.36
59 36 0.22
60 45 0.27
61 6 0.04
63 15 0.09
64 5 0.03
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.37
Consensus pattern (59 bp):
TTTTCTTGAAAATAAAATTTTCAAAAAAGTATTTTTAAGAAAAAGTTGAAAGTATCAAT
Found at i:15137985 original size:60 final size:59
Alignment explanation
Indices: 15137845--15138111 Score: 301
Period size: 58 Copynumber: 4.5 Consensus size: 59
15137835 AGTAGTTTCG
* * * * * *
15137845 AGGAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAAAATTTTTAAAAAA--AATTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTTCAAAAAAGCATTTTTA
*
15137903 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTCTCAAAAAAGGCATTTTTA
1 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAAAAA-GCATTTTTA
* * * * *
15137963 AGGAAAAGCTAAAAGTATCAATTTTCTTTCAAAATAAAATTTTAAAAAAAAAAAGCA-TTTTA
1 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTT----CAAAAAAGCATTTTTA
*
15138025 AGGAAAAGTTG-AAGTATCAATTTTTCTTGAAAATAAAATTTTCAAAAAAGCATTTTTGA
1 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAAAAAGCATTTTT-A
* *
15138084 A-GAAAAATTGAAAGTATTAATTTTCCTT
1 AGGAAAAGTTGAAAGTATCAATTTTCCTT
15138112 CCATAAAGCC
Statistics
Matches: 177, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
57 22 0.12
58 44 0.25
59 17 0.10
60 43 0.24
61 28 0.16
62 14 0.08
63 3 0.02
64 6 0.03
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (59 bp):
AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAAAAAGCATTTTTA
Found at i:15138070 original size:121 final size:118
Alignment explanation
Indices: 15137847--15138108 Score: 327
Period size: 121 Copynumber: 2.2 Consensus size: 118
15137837 TAGTTTCGAG
* * * *
15137847 GAAAAATTGAAAGTATCAATTTT-TCTTAAAAATAAAAATTTTTAAAAAAAATTTTGAGGAAAAG
1 GAAAAACTAAAAGTATCAATTTTCTCTTAAAAATAAAAATTTTAAAAAAAAATTTTAAGGAAAAG
15137911 TTGAAAGTATCAATTTTCCTTGAAAATAAAATTCTCAAAAAAGGCATTTTT-AA
66 TTGAAAGTATCAATTTTCCTTGAAAATAAAATTCTCAAAAAA-GCATTTTTGAA
* *
15137964 GGAAAAGCTAAAAGTATCAATTTTCT-TTCAAAAT-AAAATTTTAAAAAAAAAAAGCATTTTAAG
1 -GAAAAACTAAAAGTATCAATTTTCTCTTAAAAATAAAAATTTT---AAAAAAAA--ATTTTAAG
* *
15138027 GAAAAGTTG-AAGTATCAATTTTTCTTGAAAATAAAATTTTCAAAAAAGCATTTTTGAA
60 GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTCTCAAAAAAGCATTTTTGAA
* * *
15138085 GAAAAATTGAAAGTATTAATTTTC
1 GAAAAACTAAAAGTATCAATTTTC
15138109 CTTCCATAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
117 8 0.06
118 27 0.22
119 1 0.01
120 35 0.28
121 38 0.30
122 16 0.13
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (118 bp):
GAAAAACTAAAAGTATCAATTTTCTCTTAAAAATAAAAATTTTAAAAAAAAATTTTAAGGAAAAG
TTGAAAGTATCAATTTTCCTTGAAAATAAAATTCTCAAAAAAGCATTTTTGAA
Found at i:15148612 original size:51 final size:51
Alignment explanation
Indices: 15148557--15148717 Score: 180
Period size: 51 Copynumber: 3.1 Consensus size: 51
15148547 TAAGAGAAAG
15148557 AAAAAGGGCTCAAATTGAAAACCTATAAAAGGCAATTTGAGTTCAAAAAAA
1 AAAAAGGGCTCAAATTGAAAACCTATAAAAGGCAATTTGAGTTCAAAAAAA
* * * * *
15148608 AAAAAGAGCTCAAATTGAAAACTTGTAAATGGCGATTTGAGTT-AAAAAAA
1 AAAAAGGGCTCAAATTGAAAACCTATAAAAGGCAATTTGAGTTCAAAAAAA
* * * *
15148658 AAAAAGAAAAAGAGCCCAAATTGAAAACCTATAAAGGGCAGTTTTAGTTCAAAAAAA
1 AAAAAG-----G-GCTCAAATTGAAAACCTATAAAAGGCAATTTGAGTTCAAAAAAA
15148715 AAA
1 AAA
15148718 GAAAAAAAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
50 13 0.14
51 38 0.42
56 29 0.32
57 10 0.11
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (51 bp):
AAAAAGGGCTCAAATTGAAAACCTATAAAAGGCAATTTGAGTTCAAAAAAA
Found at i:15148741 original size:58 final size:56
Alignment explanation
Indices: 15148564--15148872 Score: 256
Period size: 58 Copynumber: 5.4 Consensus size: 56
15148554 AAGAAAAAGG
* * * *
15148564 GCTCAAATTGAAAACCTATAAAAGGCAATTTGAGTT-----CAAAAAAAAAAAAGA
1 GCTCAAATTGAAAACCTATAAAGGGCGATTTGAGTTAAAAAAAAAAAAAAAAAAAA
* * * * *
15148615 GCTCAAATTGAAAACTTGTAAATGGCGATTTGAGTTAAAAAAAAAAAAGAAAAAGA
1 GCTCAAATTGAAAACCTATAAAGGGCGATTTGAGTTAAAAAAAAAAAAAAAAAAAA
* *
15148671 GCCCAAATTGAAAACCTATAAAGGGC-AGTTTTAGTTCAAAAAAAAAAGAAAAAAAAAA
1 GCTCAAATTGAAAACCTATAAAGGGCGA-TTTGAGTT-AAAAAAAAAA-AAAAAAAAAA
* * ** * *
15148729 GCTTACATTGAAAACCCGTAAATGGCGATTTAAGTTCAAAAAAAATTAAAAAAAAAAAGA
1 GCTCAAATTGAAAACCTATAAAGGGCGATTTGAGTT-AAAAAAAA--AAAAAAAAAAA-A
* **
15148789 GCTCAAATTGAAAATCCATAAAAAATG-G-TTTGAGTTAAAAAAATTAAAAAAAAAAAAAA
1 GCTCAAATTGAAAA-CC-TATAAAGGGCGATTTGAGTT-AAAAAA--AAAAAAAAAAAAAA
* *
15148848 GCTCAAATTGAAAACCCACAAAGGG
1 GCTCAAATTGAAAACCTATAAAGGG
15148873 TAATTGGAGT
Statistics
Matches: 209, Mismatches: 33, Indels: 26
0.78 0.12 0.10
Matches are distributed among these distances:
51 32 0.15
55 1 0.00
56 42 0.20
57 15 0.07
58 46 0.22
59 25 0.12
60 39 0.19
61 3 0.01
62 6 0.03
ACGTcount: A:0.55, C:0.11, G:0.14, T:0.20
Consensus pattern (56 bp):
GCTCAAATTGAAAACCTATAAAGGGCGATTTGAGTTAAAAAAAAAAAAAAAAAAAA
Found at i:15150140 original size:86 final size:86
Alignment explanation
Indices: 15149885--15150403 Score: 479
Period size: 86 Copynumber: 6.1 Consensus size: 86
15149875 CTTCTTTAGC
* * * * * * *
15149885 TTAGTCTAAGTTA-TTCA-TTTTAGACTTCGGCTCCATCTAGGTCATCTTGTTTTGGATTTCGGC
1 TTAGTCCAAGTTACTT-ATTTTTAGACTTCGGTTCCATCCAAGTCATTTTGTTTTGAATTTCGAC
*
15149948 CTATGCCATATCCTTCTTTGAT
65 CTATGCCAGATCCTTCTTTGAT
* * * * ** * * *
15149970 TCAGTCCAAGTTATTTA-TTTCAAACTTTTGTTCCATCCAAGTCATTTTGTTTTGGATCTCGATC
1 TTAGTCCAAGTTACTTATTTTTAGACTTCGGTTCCATCCAAGTCATTTTGTTTTGAATTTCGACC
*
15150034 TATGCTAGATCCTTCTTTGAT
66 TATGCCAGATCCTTCTTTGAT
* * * * * * * *
15150055 TTAGGCCAAGTTACTTATTTTTAGACTTCGATTCTATCTAAGTCATTTTGTGTTAAATTTTGGCC
1 TTAGTCCAAGTTACTTATTTTTAGACTTCGGTTCCATCCAAGTCATTTTGTTTTGAATTTCGACC
*
15150120 TATGCCAGATACTTCTTTGAT
66 TATGCCAGATCCTTCTTTGAT
* * * *
15150141 TTAGTTCAAGTTACTTATTTCTAGACTTCGGTTCCATCCAAGTCATTTTATTTTGAATTTTGACC
1 TTAGTCCAAGTTACTTATTTTTAGACTTCGGTTCCATCCAAGTCATTTTGTTTTGAATTTCGACC
*
15150206 TATGCCAGATCCTTATTTGAT
66 TATGCCAGATCCTTCTTTGAT
* * * * * **
15150227 TTAGTCCAAGTTACTTGTTTTTAGACTTCGTTTCCATCCAATTCATTTTATTTGGGCTTTCGACC
1 TTAGTCCAAGTTACTTATTTTTAGACTTCGGTTCCATCCAAGTCATTTTGTTTTGAATTTCGACC
*
15150292 TATGCCAGATTCTTCTTTGAT
66 TATGCCAGATCCTTCTTTGAT
* * ** * ** * * ** * * *
15150313 CTGGTCCAAGTTGTTTA-TTTTAAACTTCAATTCAATCCAGGTCATTACGTTTCTGGATTTTGGC
1 TTAGTCCAAGTTACTTATTTTTAGACTTCGGTTCCATCCAAGTCATTTTGTTT-TGAATTTCGAC
* * *
15150377 CTGTGCCAAATCCTTCTTTGAC
65 CTATGCCAGATCCTTCTTTGAT
15150399 TTAGT
1 TTAGT
15150404 TCGAGTCGTT
Statistics
Matches: 350, Mismatches: 81, Indels: 5
0.80 0.19 0.01
Matches are distributed among these distances:
85 107 0.31
86 243 0.69
ACGTcount: A:0.21, C:0.20, G:0.15, T:0.45
Consensus pattern (86 bp):
TTAGTCCAAGTTACTTATTTTTAGACTTCGGTTCCATCCAAGTCATTTTGTTTTGAATTTCGACC
TATGCCAGATCCTTCTTTGAT
Found at i:15151365 original size:8 final size:7
Alignment explanation
Indices: 15151354--15151418 Score: 65
Period size: 6 Copynumber: 10.3 Consensus size: 7
15151344 TTTTTCTTTT
15151354 TTTATCTA
1 TTTAT-TA
15151362 TTTATTA
1 TTTATTA
15151369 -TTATTA
1 TTTATTA
15151375 -TTATTA
1 TTTATTA
15151381 -TTATTA
1 TTTATTA
15151387 -TTATTA
1 TTTATTA
15151393 -TTATTA
1 TTTATTA
15151399 -TTATTA
1 TTTATTA
15151405 -TTATTA
1 TTTATTA
15151411 -TTATTA
1 TTTATTA
15151417 TT
1 TT
15151419 GTTATTGTTA
Statistics
Matches: 56, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
6 48 0.86
7 3 0.05
8 5 0.09
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTATTA
Found at i:15151369 original size:3 final size:3
Alignment explanation
Indices: 15151363--15151433 Score: 124
Period size: 3 Copynumber: 23.7 Consensus size: 3
15151353 TTTTATCTAT
15151363 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
15151411 TTA TTA TTG TTA TTG TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
15151434 GTTGTTGTTG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15151438 original size:3 final size:3
Alignment explanation
Indices: 15151417--15151459 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
15151407 ATTATTATTA
* * * *
15151417 TTG TTA TTG TTA TTA TTG TTG TTG TTG TTG TTG TTA TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
15151460 AGTTTTATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.09, C:0.00, G:0.23, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:15151592 original size:60 final size:60
Alignment explanation
Indices: 15151528--15151715 Score: 247
Period size: 60 Copynumber: 3.1 Consensus size: 60
15151518 TTTTCAATGA
* *
15151528 TTTTCTT-AAAATAAAAATTTCAAAAAAAAGTATTTTTGAGGAAAAGTTAAAAGTATCAAT
1 TTTTCTTGAAAATAAAAATTTC-AAAAAAGGCATTTTTGAGGAAAAGTTAAAAGTATCAAT
* *
15151588 TTTTCTTGAAAATAAATATTTCAAAAAAGGGATTTTTGAGGAAAAGTTGAAAA-TATCAAT
1 TTTTCTTGAAAATAAAAATTTCAAAAAAGGCATTTTTGAGGAAAAGTT-AAAAGTATCAAT
* * * *
15151648 TTTCCTTGAAAA-AAAAATTTTCAAAAAGGGCATTTTTAAGGAAAAATTAAAAGTATCAAT
1 TTTTCTTGAAAATAAAAA-TTTCAAAAAAGGCATTTTTGAGGAAAAGTTAAAAGTATCAAT
*
15151708 TTTCCTTG
1 TTTTCTTG
15151716 CATAAAGGCA
Statistics
Matches: 115, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
59 8 0.07
60 90 0.78
61 17 0.15
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (60 bp):
TTTTCTTGAAAATAAAAATTTCAAAAAAGGCATTTTTGAGGAAAAGTTAAAAGTATCAAT
Found at i:15154824 original size:15 final size:15
Alignment explanation
Indices: 15154804--15154833 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15154794 TTGAGCAGAA
15154804 GCCAAGATTATGATC
1 GCCAAGATTATGATC
15154819 GCCAAGATTATGATC
1 GCCAAGATTATGATC
15154834 CTCAAACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (15 bp):
GCCAAGATTATGATC
Found at i:15160836 original size:73 final size:76
Alignment explanation
Indices: 15160731--15160880 Score: 270
Period size: 75 Copynumber: 2.0 Consensus size: 76
15160721 ATTAGAATGA
*
15160731 AAGAATTTCAAATTAATTATTAAATCTCAT-AAAAAAAA-TCATGTGATACTCATGAAATTCTGT
1 AAGAATTTAAAATTAATTATTAAATCTCATAAAAAAAAATTCATGTGATACTCATGAAATTCTGT
15160794 TTAGTTTTGAT
66 TTAGTTTTGAT
15160805 AAGAATTTAAAATTAA-TATTAAATCTCATAAAAAAAAATTCATGTGATACTCATGAAATTCTGT
1 AAGAATTTAAAATTAATTATTAAATCTCATAAAAAAAAATTCATGTGATACTCATGAAATTCTGT
15160869 TTAGTTTTGAT
66 TTAGTTTTGAT
15160880 A
1 A
15160881 GTACTTTACT
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
73 13 0.18
74 23 0.32
75 37 0.51
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (76 bp):
AAGAATTTAAAATTAATTATTAAATCTCATAAAAAAAAATTCATGTGATACTCATGAAATTCTGT
TTAGTTTTGAT
Found at i:15179049 original size:32 final size:26
Alignment explanation
Indices: 15178964--15179041 Score: 156
Period size: 26 Copynumber: 3.0 Consensus size: 26
15178954 AAATTTATAG
15178964 CATATGACCTTTATAAAGAATTCAAA
1 CATATGACCTTTATAAAGAATTCAAA
15178990 CATATGACCTTTATAAAGAATTCAAA
1 CATATGACCTTTATAAAGAATTCAAA
15179016 CATATGACCTTTATAAAGAATTCAAA
1 CATATGACCTTTATAAAGAATTCAAA
15179042 TTCAAACAGC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (26 bp):
CATATGACCTTTATAAAGAATTCAAA
Found at i:15183366 original size:10 final size:10
Alignment explanation
Indices: 15183351--15183446 Score: 56
Period size: 10 Copynumber: 9.5 Consensus size: 10
15183341 GGTTAAATAT
15183351 AAAAATTCTA
1 AAAAATTCTA
15183361 AAAAATTCTAA
1 AAAAATTCT-A
15183372 AATAAATTCTAAA
1 AA-AAATTCT--A
15183385 ATAAAATT-T-
1 A-AAAATTCTA
15183394 AAAAATTCT-
1 AAAAATTCTA
* *
15183403 TAAAATT-TT
1 AAAAATTCTA
** *
15183412 TTAAATACTA
1 AAAAATTCTA
* *
15183422 AACAATTTTA
1 AAAAATTCTA
15183432 AAAAATTCTA
1 AAAAATTCTA
15183442 AAAAA
1 AAAAA
15183447 ATTTAGGATG
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
8 7 0.10
9 13 0.19
10 28 0.41
11 3 0.04
12 8 0.12
13 8 0.12
14 1 0.01
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:15183396 original size:12 final size:13
Alignment explanation
Indices: 15183362--15183397 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
15183352 AAAATTCTAA
15183362 AAAATTCTAAAAT
1 AAAATTCTAAAAT
15183375 -AAATTCTAAAAT
1 AAAATTCTAAAAT
15183387 AAAATT-TAAAA
1 AAAATTCTAAAA
15183398 ATTCTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTCTAAAAT
Found at i:15183399 original size:13 final size:12
Alignment explanation
Indices: 15183353--15183389 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
15183343 TTAAATATAA
15183353 AAATTCT-AAA-
1 AAATTCTAAAAT
15183363 AAATTCTAAAAT
1 AAATTCTAAAAT
15183375 AAATTCTAAAAT
1 AAATTCTAAAAT
15183387 AAA
1 AAA
15183390 ATTTAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 7 0.28
11 3 0.12
12 15 0.60
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (12 bp):
AAATTCTAAAAT
Found at i:15183548 original size:17 final size:18
Alignment explanation
Indices: 15183522--15183556 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15183512 AAATCAAAGA
*
15183522 ATAAAGATTT-TTAAAAT
1 ATAAAAATTTATTAAAAT
15183539 ATAAAAATTTATTAAAAT
1 ATAAAAATTTATTAAAAT
15183557 TCAAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
ATAAAAATTTATTAAAAT
Found at i:15183637 original size:20 final size:20
Alignment explanation
Indices: 15183591--15183637 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
15183581 ATAGTTACAA
* *
15183591 TAAAAAAATCTAAAATTTTT
1 TAAAAAAATATAAAAGTTTT
* *
15183611 TGAAAAAGTATAAAAGTTTT
1 TAAAAAAATATAAAAGTTTT
15183631 TAAAAAA
1 TAAAAAA
15183638 TTGTAACAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.34
Consensus pattern (20 bp):
TAAAAAAATATAAAAGTTTT
Found at i:15183875 original size:28 final size:27
Alignment explanation
Indices: 15183835--15183889 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
15183825 GATTTTTTTT
15183835 AAAAAAATTTATATTTTTTTAAAATTTC
1 AAAAAAATTTATA-TTTTTTAAAATTTC
* *
15183863 AAAAAATTTTATATTTTTTAAAGTTTC
1 AAAAAAATTTATATTTTTTAAAATTTC
15183890 TTTTATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (27 bp):
AAAAAAATTTATATTTTTTAAAATTTC
Found at i:15184015 original size:22 final size:20
Alignment explanation
Indices: 15183989--15184046 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
15183979 TTTATTTTTT
*
15183989 ATTTTTCAAAATTTTT-AGAA
1 ATTTTTTAAAATTTTTCAG-A
15184009 ATTTTTTAAAATTTTATCAGA
1 ATTTTTTAAAATTTT-TCAGA
*
15184030 CTTTTTTTAAAATTTTT
1 -ATTTTTTAAAATTTTT
15184047 TATATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 14 0.42
21 3 0.09
22 16 0.48
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.57
Consensus pattern (20 bp):
ATTTTTTAAAATTTTTCAGA
Found at i:15184047 original size:10 final size:10
Alignment explanation
Indices: 15183989--15184063 Score: 55
Period size: 10 Copynumber: 7.4 Consensus size: 10
15183979 TTTATTTTTT
*
15183989 ATTTTTCAAA
1 ATTTTTTAAA
15183999 A-TTTTTAGAA
1 ATTTTTTA-AA
15184009 ATTTTTTAAA
1 ATTTTTTAAA
* *
15184019 ATTTTATCAGAC
1 ATTTT-TTA-AA
*
15184031 TTTTTTTAAA
1 ATTTTTTAAA
*
15184041 ATTTTTT-AT
1 ATTTTTTAAA
*
15184050 ATTTTTTGAA
1 ATTTTTTAAA
15184060 ATTT
1 ATTT
15184064 CAAAAAATTT
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
9 13 0.25
10 23 0.45
11 10 0.20
12 5 0.10
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:15184105 original size:34 final size:34
Alignment explanation
Indices: 15184040--15184114 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 34
15184030 CTTTTTTTAA
15184040 AATTTTTTATATTTTTTGAAATTTCAAAAAATTTT
1 AATTTTTTATATTTTTTGAAATTTCAAAAAA-TTT
15184075 AGATTTTTTA-A-TTTTT-AAACTTT-AAGAAAATTT
1 A-ATTTTTTATATTTTTTGAAA-TTTCAA-AAAATTT
15184108 AATTTTT
1 AATTTTT
15184115 ATTAAAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
32 6 0.16
33 9 0.24
34 12 0.32
35 2 0.05
36 8 0.22
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.56
Consensus pattern (34 bp):
AATTTTTTATATTTTTTGAAATTTCAAAAAATTT
Found at i:15184302 original size:20 final size:19
Alignment explanation
Indices: 15184279--15184321 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
15184269 TTTTTAAGAA
*
15184279 TTTTTTG-AACTTTAAAAT
1 TTTTTTGTAAATTTAAAAT
*
15184297 TTTTTTGTAAATTTTAAAT
1 TTTTTTGTAAATTTAAAAT
15184316 TTTTTT
1 TTTTTT
15184322 AGATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTTTTGTAAATTTAAAAT
Found at i:15184321 original size:10 final size:10
Alignment explanation
Indices: 15184308--15184445 Score: 75
Period size: 10 Copynumber: 13.5 Consensus size: 10
15184298 TTTTTGTAAA
15184308 TTTTAAATTT
1 TTTTAAATTT
*
15184318 TTTTAGATTTT
1 TTTTA-AATTT
*
15184329 TTTTCAAAATT
1 TTTT-AAATTT
* *
15184340 TTTAAAAATT
1 TTTTAAATTT
* *
15184350 ATTTAGAATTA
1 TTTTA-AATTT
* *
15184361 TTTAAAATTA
1 TTTTAAATTT
*
15184371 TTTTGAA-TT
1 TTTTAAATTT
* *
15184380 ATTTAAAATT
1 TTTTAAATTT
15184390 TTTTAAACTTT
1 TTTTAAA-TTT
*
15184401 TTTTGAAA-AT
1 TTTT-AAATTT
*
15184411 TTTTGAA-TT
1 TTTTAAATTT
*
15184420 TTTTAGAATCT
1 TTTTA-AATTT
15184431 TTTTAAATTT
1 TTTTAAATTT
15184441 TTTTA
1 TTTTA
15184446 TGTGGACCCG
Statistics
Matches: 97, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
9 13 0.13
10 48 0.49
11 32 0.33
12 4 0.04
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.59
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:15184388 original size:20 final size:20
Alignment explanation
Indices: 15184344--15184393 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
15184334 AAAATTTTTA
*
15184344 AAAATTATTTAGAATTATTT
1 AAAATTATTTTGAATTATTT
15184364 AAAATTATTTTGAATTATTT
1 AAAATTATTTTGAATTATTT
15184384 AAAATT-TTTT
1 AAAATTATTTT
15184394 AAACTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 4 0.14
20 25 0.86
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
AAAATTATTTTGAATTATTT
Found at i:15186388 original size:19 final size:19
Alignment explanation
Indices: 15186364--15186427 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
15186354 TTAACAAAAA
15186364 TATTAAATTATTTAATATT
1 TATTAAATTATTTAATATT
15186383 TATTAAATTA-TTAA-A-T
1 TATTAAATTATTTAATATT
*
15186399 TATTAAAAATTATTAAATTATT
1 TATT--AAATTATTTAA-TATT
15186421 T-TTAAAT
1 TATTAAAT
15186428 AAATTATTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
16 5 0.13
17 1 0.03
18 10 0.26
19 17 0.45
21 3 0.08
22 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTAAATTATTTAATATT
Found at i:15186393 original size:8 final size:8
Alignment explanation
Indices: 15186364--15186420 Score: 69
Period size: 8 Copynumber: 6.5 Consensus size: 8
15186354 TTAACAAAAA
15186364 TATTAAAT
1 TATTAAAT
15186372 TATTTAATATT
1 TA-TTAA-A-T
15186383 TATTAAAT
1 TATTAAAT
15186391 TATTAAAT
1 TATTAAAT
15186399 TATTAAAAAT
1 TATT--AAAT
15186409 TATTAAAT
1 TATTAAAT
15186417 TATT
1 TATT
15186421 TTTAAATAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
8 23 0.52
9 5 0.11
10 13 0.30
11 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
TATTAAAT
Found at i:15186417 original size:26 final size:27
Alignment explanation
Indices: 15186364--15186420 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
15186354 TTAACAAAAA
* *
15186364 TATTAAATTATTTAATATTTATTAAAT
1 TATTAAATTATTTAAAAATTATTAAAT
15186391 TATTAAATTA-TTAAAAATTATTAAAT
1 TATTAAATTATTTAAAAATTATTAAAT
15186417 TATT
1 TATT
15186421 TTTAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTAAATTATTTAAAAATTATTAAAT
Found at i:15189621 original size:65 final size:65
Alignment explanation
Indices: 15189543--15189730 Score: 313
Period size: 65 Copynumber: 2.9 Consensus size: 65
15189533 TCTTCAAAAG
* *
15189543 AATGACAGCGACAAATCGTAGCACTAATGTAATTGTAGTCACCAGACTTTTGATTATGCTCACAT
1 AATGACAGAGACAAATCGTAGCACTAATGTAATTGTAGTCACCAGACTTTTGATCATGCTCACAT
* *
15189608 AATGACAGAGACAAATCGTAGAACTAATGTAATTGTAGTCACCAGACTTTTGATCATGTTCACAT
1 AATGACAGAGACAAATCGTAGCACTAATGTAATTGTAGTCACCAGACTTTTGATCATGCTCACAT
* * *
15189673 AATGACAGAGACAAATCGTAGCACCATTGTAATTGTAGTCACCGGACTTTTGATCATG
1 AATGACAGAGACAAATCGTAGCACTAATGTAATTGTAGTCACCAGACTTTTGATCATG
15189731 GTCGTGGTTT
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 115 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (65 bp):
AATGACAGAGACAAATCGTAGCACTAATGTAATTGTAGTCACCAGACTTTTGATCATGCTCACAT
Found at i:15190501 original size:15 final size:16
Alignment explanation
Indices: 15190476--15190505 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15190466 AATGAATTAT
15190476 ATATAAAAATATATAC
1 ATATAAAAATATATAC
15190492 ATAT-AAAATATATA
1 ATATAAAAATATATA
15190506 TGTATTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
ATATAAAAATATATAC
Found at i:15191552 original size:26 final size:26
Alignment explanation
Indices: 15191513--15191568 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15191503 TCAACGTAAA
*
15191513 TGCATAAATCAAGCACCAAAATTTCT
1 TGCATAAATCAAGCACCAAAATTTCC
* *
15191539 TGCATCAATTAAGCACCAAAATTTCC
1 TGCATAAATCAAGCACCAAAATTTCC
15191565 TGCA
1 TGCA
15191569 ATGTTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (26 bp):
TGCATAAATCAAGCACCAAAATTTCC
Found at i:15192406 original size:424 final size:424
Alignment explanation
Indices: 15191613--15192451 Score: 1093
Period size: 424 Copynumber: 2.0 Consensus size: 424
15191603 TAACACAAGT
15191613 AAAATTAAACAAAAAAGTAAAGAAAACAAATAAAATCAAATTAAAATTTAAAACTTGTTTTATTG
1 AAAATTAAACAAAAAAGTAAAGAAAACAAATAAAATCAAATTAAAATTTAAAACTTGTTTTATTG
* * *
15191678 GGCCCAAAATTTCTCAATTGAACTCAATTCTCAACTAAAAGCCTATTTTCAATCTTGAAAAATTT
66 GGCCCAAAATTTCTCAATTGAACTCAATTCTCAACCAAAAGCCTATTTCCAATCTTGAAAAATAT
* * * * * * * *
15191743 TTTGGATAAAATAAAGTGTTTACAATTGTTTCTCTGTGTATTTTATGTGGAATAAGAATTACACA
131 TTTCGAAAAAATAAAGTATCTACAATTGTTTCTCTATGCATTTTATATAGAATAAGAATTACACA
* * *
15191808 AAGACTAAAGATATCCATTTTATTCGAGTCTAAAAGCCAAGATTTAAAAAAGCGATCAAAGTATA
196 AAGACAAAAGACATCCATTTTATTCGAGTCTAAAAGCCAAGATTTAAAAAAGCAATCAAAGTATA
* * *
15191873 CCAAAATAGGAAAATGATCGAGATTGAATTGTGAAACAAGAACTAACATGATCTAGACTAAGTTA
261 CCAAAATAGGAAAATGATCGAGATTGAACTGCGAAACAAGAACTAACATGATCTAGACTAAGTCA
* **
15191938 ATATCAAAACAAGTGATCGAGATCGAACTGTAGGTCTAAAAATAAATGATTTGGACTAAGCCAAG
326 AGATCAAAACAAGTGATCGAGATCGAACTACAGGTCTAAAAATAAATGATTTGGACTAAGCCAAG
15192003 ATCAAAACAAGTGACTGAGATTGAATCGCAAAGC
391 ATCAAAACAAGTGACTGAGATTGAATCGCAAAGC
* *
15192037 AAAATTAGACAAAAAA-TAAAGAAAACAAATTAAATCAAATTAAAATTTAAAACTT-TTTTATTG
1 AAAATTAAACAAAAAAGTAAAGAAAACAAATAAAATCAAATTAAAATTTAAAACTTGTTTTATTG
* * * * *
15192100 GGCCCAAAGTTT-TCTAATTGAGCTCAATTCTCAACCGAAAGCTTGTTTCCAATCTTGAAAAA-A
66 GGCCCAAAATTTCTC-AATTGAACTCAATTCTCAACCAAAAGCCTATTTCCAATCTTGAAAAATA
* * * * *
15192163 TTTTCGAAAAAAT-AGGATATCTACAGTTGTCTAT-TTTCATGCATTTTCTATAGAATAGGAATT
130 TTTTCGAAAAAATAAAG-TATCTACAATTGT-T-TCTCT-ATGCATTTTATATAGAATAAGAATT
* * * *
15192226 GCACAAAGACAAAAAGACATCCATTTTATTCGAGTCTGAAAGCCGAGATTTAAAAAAGTAATCAA
191 ACACAAAGAC-AAAAGACATCCATTTTATTCGAGTCTAAAAGCCAAGATTTAAAAAAGCAATCAA
* * *
15192291 AGTATACCAAAATAGGAAAATGATTGAGATTGAACTGCGAAACAAGAACTGACATGAT-TTGAAC
255 AGTATACCAAAATAGGAAAATGATCGAGATTGAACTGCGAAACAAGAACTAACATGATCTAG-AC
* * * * * *
15192355 TGAGTCGAGATCAAAATAGGTGA-CTGGGATCGAA-TCACAGGTCTGAAAATAAATGATTTGGAC
319 TAAGTCAAGATCAAAACAAGTGATC-GAGATCGAACT-ACAGGTCTAAAAATAAATGATTTGGAC
* * * *
15192418 TGAGTCAAGATCAAAACAAGTGATTGTGATTGAA
382 TAAGCCAAGATCAAAACAAGTGACTGAGATTGAA
15192452 CTGCAAGTCT
Statistics
Matches: 357, Mismatches: 49, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
420 2 0.01
421 23 0.06
422 63 0.18
423 71 0.20
424 198 0.55
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (424 bp):
AAAATTAAACAAAAAAGTAAAGAAAACAAATAAAATCAAATTAAAATTTAAAACTTGTTTTATTG
GGCCCAAAATTTCTCAATTGAACTCAATTCTCAACCAAAAGCCTATTTCCAATCTTGAAAAATAT
TTTCGAAAAAATAAAGTATCTACAATTGTTTCTCTATGCATTTTATATAGAATAAGAATTACACA
AAGACAAAAGACATCCATTTTATTCGAGTCTAAAAGCCAAGATTTAAAAAAGCAATCAAAGTATA
CCAAAATAGGAAAATGATCGAGATTGAACTGCGAAACAAGAACTAACATGATCTAGACTAAGTCA
AGATCAAAACAAGTGATCGAGATCGAACTACAGGTCTAAAAATAAATGATTTGGACTAAGCCAAG
ATCAAAACAAGTGACTGAGATTGAATCGCAAAGC
Found at i:15192817 original size:86 final size:86
Alignment explanation
Indices: 15192676--15193023 Score: 276
Period size: 86 Copynumber: 4.1 Consensus size: 86
15192666 TTCTCAAAGG
* * * ** **
15192676 TTTCAAGTTTGCAAGGACTTTTAGATTCGTAAGAAT-GAAATATTTGCAAGATTTCAAGTTTCAC
1 TTTCAAGATCGCAAGGACTTTTTGATTCACAAGAATGGAAA-ATTCACAAGATTTCAAGTTTCAC
* *
15192740 AGAGGTTCTAGATTCGCAAAAA
65 AAAGGTTCTAGATTAGCAAAAA
* ** * * *
15192762 CTTT-AGGATCGCAA-GAGCTTTTTGATTTGCAAGAATGGAAGATTCATAAGATTTCAAGTTTCG
1 -TTTCAAGATCGCAAGGA-CTTTTTGATTCACAAGAATGGAAAATTCACAAGATTTCAAGTTTCA
* *
15192825 TAAAGGTTCTAGATTAGCAAAGA
64 CAAAGGTTCTAGATTAGCAAAAA
* * * * **
15192848 TTTCAAGTTCGCAAGGATTTTTTGATTCACAAGAATGGAAAATTCACAAGATTCCAAAATTT-GT
1 TTTCAAGATCGCAAGGACTTTTTGATTCACAAGAATGGAAAATTCACAAGATTTC-AAGTTTCAC
* * * *
15192912 AAAGATTCTAGATTCGTAAAGA
65 AAAGGTTCTAGATTAGCAAAAA
* * ** ** * * *
15192934 TTTCAAGTTTGCAAAAACTTTCAGATTCACAAAAATGAAAAATTCACAAGAGTTCAAGTTTCACA
1 TTTCAAGATCGCAAGGACTTTTTGATTCACAAGAATGGAAAATTCACAAGATTTCAAGTTTCACA
*
15192999 AAGATTCTAGATT--CAAAAGA
66 AAGGTTCTAGATTAGCAAAA-A
15193019 TTTCA
1 TTTCA
15193024 TAATAAAATT
Statistics
Matches: 212, Mismatches: 42, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
84 3 0.01
85 16 0.08
86 180 0.85
87 13 0.06
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (86 bp):
TTTCAAGATCGCAAGGACTTTTTGATTCACAAGAATGGAAAATTCACAAGATTTCAAGTTTCACA
AAGGTTCTAGATTAGCAAAAA
Found at i:15192861 original size:17 final size:18
Alignment explanation
Indices: 15192809--15192867 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 18
15192799 GAAGATTCAT
* *
15192809 AAGATTTCAAGTTTCGTA
1 AAGATTTCAAGATTCGCA
* * *
15192827 AAG-GTTCTAGATTAGCA
1 AAGATTTCAAGATTCGCA
15192844 AAGATTTCAAG-TTCGCA
1 AAGATTTCAAGATTCGCA
*
15192861 AGGATTT
1 AAGATTT
15192868 TTTGATTCAC
Statistics
Matches: 31, Mismatches: 9, Indels: 3
0.72 0.21 0.07
Matches are distributed among these distances:
17 23 0.74
18 8 0.26
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (18 bp):
AAGATTTCAAGATTCGCA
Found at i:15193013 original size:17 final size:17
Alignment explanation
Indices: 15192956--15193020 Score: 53
Period size: 17 Copynumber: 3.9 Consensus size: 17
15192946 AAAAACTTTC
* **
15192956 AGATTCACAAAAATGAA
1 AGATTCACAAAGATTCA
*
15192973 AAATTCAC-AAGAGTTCA
1 AGATTCACAAAGA-TTCA
* *
15192990 AGTTTCACAAAGATTCT
1 AGATTCACAAAGATTCA
15193007 AGATTCA-AAAGATT
1 AGATTCACAAAGATT
15193021 TCATAATAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
16 10 0.26
17 24 0.63
18 4 0.11
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (17 bp):
AGATTCACAAAGATTCA
Found at i:15193197 original size:55 final size:54
Alignment explanation
Indices: 15193108--15193332 Score: 184
Period size: 55 Copynumber: 4.1 Consensus size: 54
15193098 ATCATGGGTT
* ** * *
15193108 TGAAAAATGATCTAGATTGGGCCGAGATTAAATGATAAGGAATAAACCACAAGTC
1 TGAAAAATGATCTAGACTAAGCCAAGATCAAATGAT-AGGAATAAACCACAAGTC
* * * *
15193163 TAAAAAATGATCTAGACTAAGCCAAGATCGAATGACTA-GAACAAAACCACAAGTT
1 TGAAAAATGATCTAGACTAAGCCAAGATCAAATGA-TAGGAA-TAAACCACAAGTC
* * * * *
15193218 TGAAAAATGATATGGACTAAACCAAGATCAAATGATCGAGACGT-AACCACAAGTC
1 TGAAAAATGATCTAGACTAAGCCAAGATCAAATGATAG-GA-ATAAACCACAAGTC
* * * * * * *
15193273 TGAAAAATGATTTGGACTGAGCCAAGATCAAATAATTGAGACTGAACCACAAGTC
1 TGAAAAATGATCTAGACTAAGCCAAGATCAAATGATAG-GAATAAACCACAAGTC
*
15193328 AGAAA
1 TGAAA
15193333 GATAAAATGA
Statistics
Matches: 139, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
54 5 0.04
55 131 0.94
56 3 0.02
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.20
Consensus pattern (54 bp):
TGAAAAATGATCTAGACTAAGCCAAGATCAAATGATAGGAATAAACCACAAGTC
Found at i:15193434 original size:121 final size:121
Alignment explanation
Indices: 15193248--15193514 Score: 302
Period size: 121 Copynumber: 2.2 Consensus size: 121
15193238 ACCAAGATCA
* * * *
15193248 AATGATCGAGAC-GTAACCACAAGTCTGAAAAATGATTTGGACTGAGCCAAGATCAAATAATTGA
1 AATGATTGAGACTG-AACCACAAGTCTGAAAAATGATCTGGACTAAGCCAAGATCAAATAACTGA
* ** * **
15193312 GACTGAACCACAAGTCAGAAAGATAAAATGACCAGGACTGAGTTGAGGCCGAAGTTG
65 GACTAAACCACAAGTCAGAAAGATAAAACAACCAGGACTAAGTCAAGGCCGAAGTTG
* * * * *
15193369 AATGATTGAGACTGAACCATAAGTTTGAAAAATGATCTGGACTAAGCTAAGATTAAATGACTGAG
1 AATGATTGAGACTGAACCACAAGTCTGAAAAATGATCTGGACTAAGCCAAGATCAAATAACTGAG
* * * * * **
15193434 ACTAAATCTCAAGTCTGAAAGATAAAGCAACTAGGACTAAGTCAAGGTTGAAGTTG
66 ACTAAACCACAAGTCAGAAAGATAAAACAACCAGGACTAAGTCAAGGCCGAAGTTG
* *
15193490 AATGAATGAAACTGAACCACAAGTC
1 AATGATTGAGACTGAACCACAAGTC
15193515 AAGAAAATGA
Statistics
Matches: 119, Mismatches: 26, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
121 118 0.99
122 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (121 bp):
AATGATTGAGACTGAACCACAAGTCTGAAAAATGATCTGGACTAAGCCAAGATCAAATAACTGAG
ACTAAACCACAAGTCAGAAAGATAAAACAACCAGGACTAAGTCAAGGCCGAAGTTG
Found at i:15194341 original size:29 final size:30
Alignment explanation
Indices: 15194277--15194342 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
15194267 ATTTAAGTTT
* * *
15194277 CCTTTTTTTTTTTTCTCTTTTTTTTGCTCC
1 CCTTTTTATTTTTTCTCTATTTTTTGCACC
*
15194307 CTTTTTTATTTTTT-T-TATTTTTTGCACAC
1 CCTTTTTATTTTTTCTCTATTTTTTGCAC-C
15194336 CCTTTTT
1 CCTTTTT
15194343 CATTATATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 10 0.33
29 8 0.27
30 12 0.40
ACGTcount: A:0.06, C:0.20, G:0.03, T:0.71
Consensus pattern (30 bp):
CCTTTTTATTTTTTCTCTATTTTTTGCACC
Found at i:15199022 original size:19 final size:18
Alignment explanation
Indices: 15198988--15199023 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15198978 ATAATGAATT
*
15198988 ATATATAAAAATATATGC
1 ATATAAAAAAATATATGC
15199006 ATATAAAAAATATATATG
1 ATATAAAAAA-ATATATG
15199024 TATTATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (18 bp):
ATATAAAAAAATATATGC
Found at i:15206014 original size:865 final size:860
Alignment explanation
Indices: 15202121--15206144 Score: 3657
Period size: 863 Copynumber: 4.7 Consensus size: 860
15202111 GTGTTAGGTC
* * * * * *
15202121 AAAAAGTATCTAATCAATTAAGTTAGTGAAAGTAAAATTAAACAATCAATTAATCTTTAAACAAT
1 AAAAAGTCTCTAATCAATTAAGCTAGT-AGAGCAAAATTAAACAATTAATCAATCTTTAAACAAT
* * * ** * * * * * *
15202186 CAATCAACTACATAAGAGATAATAATTTAATATAATTAGGCTCAATTGACCTATATTCACGGAT-
65 CAATCAACCACACAAGAGATAATAATTTAATGTGGTTTGGCTCAACTGACTTACATCCATGGATG
* * * * * *
15202250 A-AAAAAAAATTTACTAGTTGTAAAGAATTACAAATATATATTAAATCAATCTAACTCAATAATT
130 AGAAAAAAGATTCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATAATT
** ** * * * * *
15202314 AATACTTGTAGATCTTCTCAATCTTTTCTAGTCCTATAAAGCATTCTCCACCAAAATAAAAACAT
195 AATA-TCATAGCCCTT-TCAA--TTTTCTAGTCCTATGAAGTATTCTCTACC-TAA-ACAAACAT
* * * * * *
15202379 ATCCATGTGTACGTCTGCATCATACCTATGTGG-ATCATCTCAGTTTCTTTTAGTCTACTCACAA
254 ATCCATGTGTACCTCTGCACCATACCTATGTGGAATCATCTTAGTCTCTTCTAGTCCACTCACAA
* * * * *
15202443 ACATTCAAATATACACACTCATAAGATGTAAATCTCCAGTAATTTTATGGGGTGTTTAT-TC-TA
319 ACATTCAAACATACACAC-CATAAGATGTAAATCTCCAGTAGTCTTATGAGGTGTCTATATCATA
* * *
15202506 TAAAATCCTACAACTCTCTCATATATTTTTATCATACCTAACCTTATAGTA-ACTTCACATATTT
383 -AAAATCTTACAACTCTCTTATAT-TTTTTCTCATACCTAACCTTATAG-AGACTTCAC-TATTT
* * *
15202570 ATAA-CATACAAACTTACCTATCAAGAATCATTTTCTTATTAGAATTCTTC-TTCTGCAAGTTTT
444 ATAAGCATACAAACTTACCTATCAAGAATCTTTTTCTTTTTAGAATTCTTCTTTCTGTAAGTTTT
15202633 CTTGTCCATCAAATAATATCTAGCCAAT-CTCAAATAAATCTCTTATGAAATTTGAGTCACTATT
509 CTTGTCCATCAAATAATATCTAGCCAATCCT-AAATAAATCTCTTATGAAATTTGAGTCACTATT
* * * * * * * * * *
15202697 TCTAACAATATCCACTTTAACTCAAACTTCATCAAATCATCTATCCTCATATTATATATGTTTGG
573 CCCAACAATCTCCACTTTGACTCAAATTTCATCAAATCATCTATCTTCATACTAGACATGCTTGG
* *
15202762 CTCCATCTATAATAAAAATCTCACAATCATCTTCTCTTATGTATCTTCACGCTTTACAT-AAATC
638 CTCCACCTACAATAAAAATCTCACAATCATCTTCTCTTATGTATCTTCACGC-TT-CATGAAATC
** * * * * * * *
15202826 AATCCTCAAAATATGAACT-GCAACTCTTTCTTTTAATCGAGCTCCTTTGAGCTTACATTTTTCC
701 AATTTTCAAAACATGAACTCGAAACTCTTTCCTTGAATCAAGCTCCTTTGAGCTTACCTTTTCCC
* * * * *
15202890 ATATCTCGAACCTCTAGCTCTTCTCATGTTTTAAACCTTCAGCTCTGATACTACTTATTAAGGAT
766 ATATCTCAAACCTTTAGCTCTTTTCATGTTTTAAACCTTCAGCTCTGATACCACTTATTAGGGAT
* * *
15202955 CACGATGGCTCTAAAATCACTTGTTAGGCA
831 CACGATGGTTCTAAAACCACTTATTAGGCA
* * * * * *
15202985 AAAAAGCCTCTAATCAATTAAGCCAACATA-AGCAAAATTAAACAATTAATTAATTTTTAAATAA
1 AAAAAGTCTCTAATCAATTAAG-CTA-GTAGAGCAAAATTAAACAATTAATCAATCTTTAAACAA
* * * * * * ** ** * * *
15203049 TTAATTAATCAAACAAAAGATGATAATTTAACATGGTTTTAACCCAACTAACTTACATCCATGTA
64 TCAATCAACCACACAAGAGATAATAATTTAATGTGG-TTTGGCTCAACTGACTTACATCCATGGA
* *
15203114 CGAGAAAAAA-AATCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATAA
128 TGAGAAAAAAGATTCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATAA
* *
15203178 -T--TA--ATA--CC---C-A--TT-GA-TCCTATTAAGTATTCTCTATCC-AAACAAATACATA
193 TTAATATCATAGCCCTTTCAATTTTCTAGTCCTATGAAGTATTCTCTA-CCTAAAC-AA-ACATA
** * * * * * *
15203227 TCCATGTACACTTCTGCATCACACCTATGT-AAATCATCTTAGTCTCTTCTAGTCCATTTACAAA
255 TCCATGTGTACCTCTGCACCATACCTATGTGGAATCATCTTAGTCTCTTCTAGTCCACTCACAAA
* * ** *
15203291 TATTCAAACATATACAACCATAAGACATAAATCTCCAGTAGTTTTATGAGGTGTCTATA-C-TAT
320 CATTCAAACATACAC-ACCATAAGATGTAAATCTCCAGTAGTCTTATGAGGTGTCTATATCATA-
* * * * * * *
15203354 AAAACCTTATAACTCTCTTAT-TTTTTTTTCATACCGAACCTTATGGAGAATTCACCTCTTTATA
383 AAAATCTTACAACTCTCTTATATTTTTTCTCATACCTAACCTTATAGAGACTTCA-CTATTTATA
* * * * * *
15203418 AGCATACGAACTTCCCTATCAAGAATCTTTTTCCTCTTAGAGTTCTT-TTTCTGTAAGTTTTTTT
447 AGCATACAAACTTACCTATCAAGAATCTTTTTCTTTTTAGAATTCTTCTTTCTGTAAGTTTTCTT
* * *
15203482 ATCCATCAAATAATAACTAGCCAATCCTAAATAAATCTTTTAT-AAGATTTGAGTCACTATAT-C
512 GTCCATCAAATAATATCTAGCCAATCCTAAATAAATCTCTTATGAA-ATTTGAGTCACTAT-TCC
* * * * * * * **
15203545 CGACTATCTCTACATTGACTCAAATTAT-ATCAAATCATTTGTCTTTATGTTAGACATGCTTGGC
575 CAACAATCTCCACTTTGACTCAAATT-TCATCAAATCATCTATCTTCATACTAGACATGCTTGGC
* * ** * * * * * *
15203609 TCTACTTGTAATGAAAATCTTACAATCATCTTTTCTTATGTGTCTTTACGCTTCACGTAAAT-AG
639 TCCACCTACAATAAAAATCTCACAATCATCTTCTCTTATGTATCTTCACGCTTCATG-AAATCA-
* * * * *
15203673 ATATTT-AAAACATAAACTCG-AACTCTTTCCTTGAATCAAGCTTCTTTGAGCTTGCTTTTTCTC
702 AT-TTTCAAAACATGAACTCGAAACTCTTTCCTTGAATCAAGCTCCTTTGAGCTTACCTTTTCCC
* *
15203736 ATATCTCAAACCTTTAGCTCTTTTCATGTTTTAAACCTTCAGCTCTAATATCACTTATTAGGGAT
766 ATATCTCAAACCTTTAGCTCTTTTCATGTTTTAAACCTTCAGCTCTGATACCACTTATTAGGGAT
* * * *
15203801 CATGATGATTCTAAAATCACTTATTAGGTA
831 CACGATGGTTCTAAAACCACTTATTAGGCA
* ** * * * *
15203831 AAAAAGT-TCCAATCAATTAAATTAATAGAAGCAAAATCAAACAATCAATCAATTTTTAAACAAT
1 AAAAAGTCTCTAATCAATTAAGCTAGTAG-AGCAAAATTAAACAATTAATCAATCTTTAAACAAT
* * ** * * * * *
15203895 CATTCAACCATACAAGAGACGACAATTTAATGTAGTTTGGCTTAATTGATCTGT--ATCTATGGA
65 CAATCAACCACACAAGAGATAATAATTTAATGTGGTTTGGCTCAACTGA-CT-TACATCCATGGA
*
15203958 TGGGGAAAAAAGATTCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATA
128 T-GAGAAAAAAGATTCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATA
* * * * * * * *
15204023 ATTAATACCTATAGGTCCTCTCAGTCTTTTTAGTCCTATGTAGTATTCTTTATCTAAACAAACAT
192 ATTAATATC-ATA-GCCCTTTCAAT-TTTCTAGTCCTATGAAGTATTCTCTACCTAAACAAACAT
* ** * * * *
15204088 ATACCCATATGTACCTCTGCAGGATATCTATGTGGAATCATCTTAATCTCTTCTAGTCTATTCAC
254 AT--CCATGTGTACCTCTGCACCATACCTATGTGGAATCATCTTAGTCTCTTCTAGTCCACTCAC
* * * *
15204153 AAACATTCAAACATATACACCCATAAGATGTAAATCTCCAATAGTCTTATAAGGTGT-TATCTCA
317 AAACATTCAAACATACACA-CCATAAGATGTAAATCTCCAGTAGTCTTATGAGGTGTCTATATCA
* * * * *
15204217 T-AAAATCTTATAACTGTTTTACATTTTTTTCTCATACCTAACCTTGTAGAGACTTCACATATTT
381 TAAAAATCTTACAACTCTCTTATA-TTTTTTCTCATACCTAACCTTATAGAGACTTCAC-TATTT
* * *
15204281 ATAAGCATACAAACTTACCTATCAAGAATATTTTT-TTTTTAGAATT-TTTTTTCTATAA-TTCT
444 ATAAGCATACAAACTTACCTATCAAGAATCTTTTTCTTTTTAGAATTCTTCTTTCTGTAAGTT-T
* * * * * * *
15204343 TCTTGTCCATTAAATAATATCTAGCTAATCCTAAACAAATCTTTTAT-AGGATTTAAGTCACGAT
508 TCTTGTCCATCAAATAATATCTAGCCAATCCTAAATAAATCTCTTATGA-AATTTGAGTCACTAT
** * * * * * *
15204407 TCTTAACAATCTCCATTTTGACTCAAATTTTATTAGATCATCTATCTTCATACCAGACATGCTTT
572 TCCCAACAATCTCCACTTTGACTCAAATTTCATCAAATCATCTATCTTCATACTAGACATGCTTG
* * * * * * * *
15204472 ACTTCACTTACAATAAAAGTCTCACGATCATCTT-T-TTTTGTATCTTCATGTTTCATGCAAATC
637 GCTCCACCTACAATAAAAATCTCACAATCATCTTCTCTTATGTATCTTCACGCTTCATG-AAATC
* * **
15204535 AATTTTCAAAACTTGAACTCGAAACTCTTTCCTTAAATTGAGCTCCTTTGAGCTTACCTTTT-CC
701 AATTTTCAAAACATGAACTCGAAACTCTTTCCTTGAATCAAGCTCCTTTGAGCTTACCTTTTCCC
* * * * **
15204599 ATATCTCAAACCTTTAGGTC-TTCCTACGTTTTAAACCTT-AACTCTGATACCACTTGCTAGGGA
766 ATATCTCAAACCTTTAGCTCTTTTC-ATGTTTTAAACCTTCAGCTCTGATACCACTTATTAGGGA
* * * *
15204662 TCACGATAGTTTTGAAACTACTTATTAGGCA
830 TCACGATGGTTCTAAAACCACTTATTAGGCA
* * * ** * *
15204693 AAAAAGCCTCCAATCAATTAAGCCAGCGGAACCAAAATTAAACAATTAATAAATCTTTAAACAAT
1 AAAAAGTCTCTAATCAATTAAGCTAGTAG-AGCAAAATTAAACAATTAATCAATCTTTAAACAAT
* * * * ** * * * **
15204758 CAATTAACTATACAAGAGATAACAATTTAATGTGGTTCAGCCCAACTAACCTACATTTATGGATG
65 CAATCAACCACACAAGAGATAATAATTTAATGTGGTTTGGCTCAACTGACTTACATCCATGGATG
* * * * *
15204823 AAAAAAAAAGATCCACTAGTTGTAGAGAATTATAAACATACATCAAATCAATCTTACTCAATAAT
130 -AGAAAAAAGATTCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATAAT
* * * * *
15204888 TAATATCAATAATCCCTTTTAATCTCCTCTAGTCCTATGGAGTATTCTCTACCTAAACAAATATA
194 TAATATC-AT-AGCCCTTTCAAT-T-TTCTAGTCCTATGAAGTATTCTCTACCTAAACAAACATA
* * * * * * *
15204953 TACCTATGTGTACCTCTACATCATACATATGT-GAATCATCTCATTCTCTTCTAGTTCACTCATA
255 T-CC-ATGTGTACCTCTGCACCATACCTATGTGGAATCATCTTAGTCTCTTCTAGTCCACTCACA
* * * * * *
15205017 AATATTCAAACAAACACACCATAAGACGTAAATCTCTAGTAGTCTTATGGGGTGTC--TATCCTA
318 AACATTCAAACATACACACCATAAGATGTAAATCTCCAGTAGTCTTATGAGGTGTCTATATCATA
* * *
15205080 TAAAATGC-TACAACTCTCTTACATTTTTTCTCATATCTAACCTTATAGAGATTTCACCTATTTA
383 -AAAAT-CTTACAACTCTCTTATATTTTTTCTCATACCTAACCTTATAGAGACTTCA-CTATTTA
* * *
15205144 TAAGCATATAAACTTGCCTATCAAGAATCTTTTTCTTTTTAGAATTCTTCTAT-TGTAA-TTCTT
445 TAAGCATACAAACTTACCTATCAAGAATCTTTTTCTTTTTAGAATTCTTCTTTCTGTAAGTT-TT
* * * * *
15205207 CTTGTCTATTAAATAATATCTAGCCAATCTTAAATAAATCTCTTATGGAATTTGAGTTACTATTC
509 CTTGTCCATCAAATAATATCTAGCCAATCCTAAATAAATCTCTTATGAAATTTGAGTCACTATTC
* * * * * * *
15205272 CCAACAATCTCTACCTTGACTTAAATTTCATCAAATCATCTATTTTTATGCTAGA-ATACTTGGC
574 CCAACAATCTCCACTTTGACTCAAATTTCATCAAATCATCTATCTTCATACTAGACATGCTTGGC
* ** * * ** * * *
15205336 TCCACCTGCAATGGAAGTCTCACAATCATCTTCTCTTGTGGGTCTTCATGCTTCATGCTAATCGA
639 TCCACCTACAATAAAAATCTCACAATCATCTTCTCTTATGTATCTTCACGCTTCATG-AAATCAA
* * *
15205401 TTTTCAAAACATGAACTCG-AAGTCTTTCCTTGAATCAAGATCATTTGAGCTTACCTTTTCCCAT
703 TTTTCAAAACATGAACTCGAAACTCTTTCCTTGAATCAAGCTCCTTTGAGCTTACCTTTTCCCAT
* * *
15205465 ATCTCAAACTTTTAGTTCTTTTCATGTTTTAAACTTTCAGCTCTGATACCACTTATTAGGGATCA
768 ATCTCAAACCTTTAGCTCTTTTCATGTTTTAAACCTTCAGCTCTGATACCACTTATTAGGGATCA
* * * * *
15205530 GGATGGTTTTGAAACCATTTATTAGACA
833 CGATGGTTCTAAAACCACTTATTAGGCA
*
15205558 AAAAAGTCTCTAATCAATTAAGCTAGTAGAGTCAAAATCAAACAATTAATCAATCTTTAAACAAT
1 AAAAAGTCTCTAATCAATTAAGCTAGTAGAG-CAAAATTAAACAATTAATCAATCTTTAAACAAT
* *
15205623 CAATCAACCACACAAGAGATAATAATTTAATGTGGTTTGGCTCTACTGACTTACATCCATGAATG
65 CAATCAACCACACAAGAGATAATAATTTAATGTGGTTTGGCTCAACTGACTTACATCCATGGATG
* ** * * * *
15205688 AGAAAAAAGATTCACTAATTGTTGAGAATTATAAACATATATCAAATTAATCTCACTCAACAATT
130 AGAAAAAAGATTCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATAATT
* * *
15205753 AATATACATAGGCCCTTTCAATTTCCTCTAGTCCTATGAAATATTCTTTACCTAAGCAAACATAT
195 AATAT-CATA-GCCCTTTCAATTT--TCTAGTCCTATGAAGTATTCTCTACCTAAACAAACATAT
* * * * * *
15205818 GCCTATATGTACTTTTG-ACCATACCTATATGGAAT-ATTTTAGTCT-TATTTAGTCCACTCACA
256 -CC-ATGTGTACCTCTGCACCATACCTATGTGGAATCATCTTAGTCTCT-TCTAGTCCACTCACA
* * * *
15205880 AACATGCAAACATACACACTCATAAAATATAAATCTCTAGTAGTCTTATGAGGTGTCTATATCAT
318 AACATTCAAACATACACAC-CATAAGATGTAAATCTCCAGTAGTCTTATGAGGTGTCTATATCAT
* *
15205945 AAAAAT-TTAGAACTTTCTTATATCTTTTTCTCATA-CTGAACCTTATAGAGACTTCATCTATTT
382 AAAAATCTTACAACTCTCTTATAT-TTTTTCTCATACCT-AACCTTATAGAGACTTCA-CTATTT
* * * **
15206008 ATAAGCATACAAACTTACCTATCAAAAATCTTTTTTTCCTTTTAGAATTCTT-TCTCTACAAGTT
444 ATAAGCATACAAACTTACCTATCAAGAATC--TTTTTCTTTTTAGAATTCTTCTTTCTGTAAGTT
* * ** * * * *** *
15206072 TTTTTGTCCATCAAGTAATATCTAATCAATCCGAAACAAATCTTTTATGGGTTTTGAGTCATTAT
507 TTCTTGTCCATCAAATAATATCTAGCCAATCCTAAATAAATCTCTTATGAAATTTGAGTCACTAT
15206137 TCCCAACA
572 TCCCAACA
15206145 TTTTGCATTG
Statistics
Matches: 2560, Mismatches: 496, Indels: 205
0.79 0.15 0.06
Matches are distributed among these distances:
843 3 0.00
844 19 0.01
845 117 0.05
846 393 0.15
847 148 0.06
848 5 0.00
849 4 0.00
852 3 0.00
853 1 0.00
854 1 0.00
855 2 0.00
858 2 0.00
860 2 0.00
861 5 0.00
862 196 0.08
863 498 0.19
864 486 0.19
865 463 0.18
866 123 0.05
867 87 0.03
868 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (860 bp):
AAAAAGTCTCTAATCAATTAAGCTAGTAGAGCAAAATTAAACAATTAATCAATCTTTAAACAATC
AATCAACCACACAAGAGATAATAATTTAATGTGGTTTGGCTCAACTGACTTACATCCATGGATGA
GAAAAAAGATTCACTAGTTGTAAAGAATTACAAACATACATCAAATCAATCTCACTCAATAATTA
ATATCATAGCCCTTTCAATTTTCTAGTCCTATGAAGTATTCTCTACCTAAACAAACATATCCATG
TGTACCTCTGCACCATACCTATGTGGAATCATCTTAGTCTCTTCTAGTCCACTCACAAACATTCA
AACATACACACCATAAGATGTAAATCTCCAGTAGTCTTATGAGGTGTCTATATCATAAAAATCTT
ACAACTCTCTTATATTTTTTCTCATACCTAACCTTATAGAGACTTCACTATTTATAAGCATACAA
ACTTACCTATCAAGAATCTTTTTCTTTTTAGAATTCTTCTTTCTGTAAGTTTTCTTGTCCATCAA
ATAATATCTAGCCAATCCTAAATAAATCTCTTATGAAATTTGAGTCACTATTCCCAACAATCTCC
ACTTTGACTCAAATTTCATCAAATCATCTATCTTCATACTAGACATGCTTGGCTCCACCTACAAT
AAAAATCTCACAATCATCTTCTCTTATGTATCTTCACGCTTCATGAAATCAATTTTCAAAACATG
AACTCGAAACTCTTTCCTTGAATCAAGCTCCTTTGAGCTTACCTTTTCCCATATCTCAAACCTTT
AGCTCTTTTCATGTTTTAAACCTTCAGCTCTGATACCACTTATTAGGGATCACGATGGTTCTAAA
ACCACTTATTAGGCA
Found at i:15206308 original size:28 final size:27
Alignment explanation
Indices: 15206252--15206316 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
15206242 TATATTGAAG
* *
15206252 TTTTTAATATATTATATTAATTTTAAA
1 TTTTTAATTTATTATATTAATTATAAA
*
15206279 TTCTTTAATTTATTAT-TTAAATTATGAA
1 TT-TTTAATTTATTATATT-AATTATAAA
15206307 TTTATTAATT
1 TTT-TTAATT
15206317 AATGTAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.16
28 27 0.84
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTTTAATTTATTATATTAATTATAAA
Found at i:15206534 original size:18 final size:20
Alignment explanation
Indices: 15206511--15206553 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
15206501 CTTAAAATTA
15206511 ATAAAATA-T-TTTTTTAAT
1 ATAAAATATTATTTTTTAAT
15206529 ATAAAATATTATTTTTTAAT
1 ATAAAATATTATTTTTTAAT
15206549 ATAAA
1 ATAAA
15206554 TAAAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 8 0.35
19 1 0.04
20 14 0.61
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATAAAATATTATTTTTTAAT
Found at i:15206589 original size:23 final size:23
Alignment explanation
Indices: 15206546--15206591 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
15206536 ATTATTTTTT
15206546 AATATAAATAAAAAATATAAATA
1 AATATAAATAAAAAATATAAATA
*
15206569 AATATTAAATAAATAAT-TAAATA
1 AATA-TAAATAAAAAATATAAATA
15206592 TATGTATCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
AATATAAATAAAAAATATAAATA
Found at i:15207552 original size:20 final size:20
Alignment explanation
Indices: 15207505--15207572 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
15207495 TTAATATTTG
*
15207505 ATATTAATTAAAT-TAATTGA
1 ATATTAATTAAATAAAATT-A
*
15207525 CTTATTAATTAAATAAAATTA
1 -ATATTAATTAAATAAAATTA
*
15207546 ATATTAAATAAATAAAATTA
1 ATATTAATTAAATAAAATTA
*
15207566 ACATTAA
1 ATATTAA
15207573 ATAATTAGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
20 24 0.59
21 13 0.32
22 4 0.10
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (20 bp):
ATATTAATTAAATAAAATTA
Found at i:15207573 original size:20 final size:20
Alignment explanation
Indices: 15207528--15207576 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
15207518 TAATTGACTT
* *
15207528 ATTAATTAAATAAAATTAAT
1 ATTAAATAAATAAAATTAAC
15207548 ATTAAATAAATAAAATTAAC
1 ATTAAATAAATAAAATTAAC
15207568 ATTAAATAA
1 ATTAAATAA
15207577 TTAGTCATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
ATTAAATAAATAAAATTAAC
Found at i:15207712 original size:21 final size:21
Alignment explanation
Indices: 15207667--15207860 Score: 184
Period size: 21 Copynumber: 9.5 Consensus size: 21
15207657 GAAAAATATA
* * *
15207667 ATTTAGTATCATTAAATT-AC
1 ATTTAATATTATTAAATTAAT
** *
15207687 ATTTAATATTACGAAATTGAT
1 ATTTAATATTATTAAATTAAT
15207708 ATTTAAT-TTCATTAAATTAAT
1 ATTTAATATT-ATTAAATTAAT
15207729 ATTTAATATTATTAAA-TAAT
1 ATTTAATATTATTAAATTAAT
* * *
15207749 AGTTAATATCATTAAATTGAT
1 ATTTAATATTATTAAATTAAT
* * *
15207770 ATTTAGTATCATTAATTTAAT
1 ATTTAATATTATTAAATTAAT
* * *
15207791 ATTGATTATTTTTAAA-TAAT
1 ATTTAATATTATTAAATTAAT
*
15207811 ATTTAATATTATGAAA-TAAT
1 ATTTAATATTATTAAATTAAT
15207831 A-TTAATATTATTAAATTAAT
1 ATTTAATATTATTAAATTAAT
*
15207851 ATTTCATATT
1 ATTTAATATT
15207861 GGTTAGATTA
Statistics
Matches: 142, Mismatches: 26, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
19 13 0.09
20 60 0.42
21 67 0.47
22 2 0.01
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (21 bp):
ATTTAATATTATTAAATTAAT
Found at i:15207712 original size:41 final size:41
Alignment explanation
Indices: 15207667--15207860 Score: 142
Period size: 41 Copynumber: 4.8 Consensus size: 41
15207657 GAAAAATATA
* *
15207667 ATTTAGTATCATTAAATT-ACATTTAATATTACGAAATTGAT
1 ATTTAATATCATTAAATTAACATTTAATATTACGAAA-TAAT
* * **
15207708 ATTTAATTTCATTAAATTAATATTTAATATTATTAAATAAT
1 ATTTAATATCATTAAATTAACATTTAATATTACGAAATAAT
* * * * * ** *
15207749 AGTTAATATCATTAAATTGATATTTAGTATCATTAATTTAAT
1 ATTTAATATCATTAAATTAACATTTAATATTACGAA-ATAAT
* * ** * *
15207791 ATTGATTATTTTTAAA-TAATATTTAATATTATGAAATAAT
1 ATTTAATATCATTAAATTAACATTTAATATTACGAAATAAT
* * *
15207831 A-TTAATATTATTAAATTAATATTTCATATT
1 ATTTAATATCATTAAATTAACATTTAATATT
15207861 GGTTAGATTA
Statistics
Matches: 124, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
39 11 0.09
40 18 0.15
41 65 0.52
42 30 0.24
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (41 bp):
ATTTAATATCATTAAATTAACATTTAATATTACGAAATAAT
Found at i:15207755 original size:62 final size:62
Alignment explanation
Indices: 15207689--15207860 Score: 206
Period size: 62 Copynumber: 2.8 Consensus size: 62
15207679 TAAATTACAT
*
15207689 TTAATATTACGAAATTGATATTTAATTTCATTAAATTAATATTTAATATTATTAAATAATAG
1 TTAATATTATGAAATTGATATTTAATTTCATTAAATTAATATTTAATATTATTAAATAATAG
* * * * * * * * *
15207751 TTAATATCATTAAATTGATATTTAGTATCATTAATTTAATATTGATTATTTTTAAATAATAT
1 TTAATATTATGAAATTGATATTTAATTTCATTAAATTAATATTTAATATTATTAAATAATAG
* *
15207813 TTAATATTATGAAA-TAATA-TTAATATT-ATTAAATTAATATTTCATATT
1 TTAATATTATGAAATTGATATTTAAT-TTCATTAAATTAATATTTAATATT
15207861 GGTTAGATTA
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
60 21 0.23
61 5 0.06
62 64 0.71
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (62 bp):
TTAATATTATGAAATTGATATTTAATTTCATTAAATTAATATTTAATATTATTAAATAATAG
Found at i:15207759 original size:82 final size:79
Alignment explanation
Indices: 15207664--15207848 Score: 203
Period size: 82 Copynumber: 2.3 Consensus size: 79
15207654 TATGAAAAAT
* * *
15207664 ATAAT-TTAGTATCATTAAATTACATTTAATATTACGAAATTGATATT-TAATTTCATTAAATTA
1 ATAATATTAATATCATTAAATTACATTTAATATCACGAAATTAATATTATAATTT--TTAAA-TA
*
15207727 ATATTTAATATTATTAA
63 ATATTTAATATTATGAA
* * ** * *
15207744 ATAATAGTTAATATCATTAAATTGATATTTAGTATCATTAATTTAATATTGATTATTTTTAAATA
1 ATAATA-TTAATATCATTAAATT-ACATTTAATATCACGAAATTAATATT-ATAATTTTTAAATA
15207809 ATATTTAATATTATGAA
63 ATATTTAATATTATGAA
*
15207826 ATAATATTAATATTATTAAATTA
1 ATAATATTAATATCATTAAATTA
15207849 ATATTTCATA
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
80 6 0.07
81 15 0.17
82 39 0.44
83 24 0.27
85 5 0.06
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.48
Consensus pattern (79 bp):
ATAATATTAATATCATTAAATTACATTTAATATCACGAAATTAATATTATAATTTTTAAATAATA
TTTAATATTATGAA
Found at i:15207812 original size:20 final size:19
Alignment explanation
Indices: 15207718--15207853 Score: 119
Period size: 20 Copynumber: 6.7 Consensus size: 19
15207708 ATTTAATTTC
15207718 ATTAAATTAATATTTAATATT
1 ATTAAA-TAATA-TTAATATT
*
15207739 ATTAAATAATAGTTAATATC
1 ATTAAATAATA-TTAATATT
* * *
15207759 ATTAAATTGATATTTAGTATC
1 ATTAAA-TAATA-TTAATATT
* *
15207780 ATTAATTTAATATTGATTATT
1 ATTAA-ATAATATT-AATATT
*
15207801 TTTAAATAATATTTAATATT
1 ATTAAATAATA-TTAATATT
*
15207821 ATGAAATAATATTAATATT
1 ATTAAATAATATTAATATT
15207840 ATTAAATTAATATT
1 ATTAAA-TAATATT
15207854 TCATATTGGT
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
19 13 0.14
20 46 0.48
21 36 0.38
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (19 bp):
ATTAAATAATATTAATATT
Found at i:15208088 original size:12 final size:10
Alignment explanation
Indices: 15208056--15208101 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
15208046 TAATATTAAA
15208056 ATTAATATAAT
1 ATTAA-ATAAT
15208067 ATTAAATAAT
1 ATTAAATAAT
15208077 ATTAAAACTAAT
1 ATT-AAA-TAAT
15208089 A--AAATAAT
1 ATTAAATAAT
15208097 ATTAA
1 ATTAA
15208102 CAAAAATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
8 5 0.16
9 3 0.10
10 10 0.32
11 8 0.26
12 5 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAATAAT
Found at i:15208096 original size:30 final size:27
Alignment explanation
Indices: 15208027--15208101 Score: 80
Period size: 27 Copynumber: 2.6 Consensus size: 27
15208017 AAATTTTATT
15208027 ATTAAAATTAATTACTT-AATAATATTAAA
1 ATTAAAA-TAA-TA-TTAAATAATATTAAA
*
15208056 ATTAATATAATATTAAATAATATTAAA
1 ATTAAAATAATATTAAATAATATTAAA
15208083 ACTAATAAAATAATATTAA
1 A-T--TAAAATAATATTAA
15208102 CAAAAATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
26 2 0.05
27 15 0.38
28 4 0.10
29 6 0.15
30 13 0.32
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.39
Consensus pattern (27 bp):
ATTAAAATAATATTAAATAATATTAAA
Found at i:15208109 original size:20 final size:20
Alignment explanation
Indices: 15208070--15208111 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
15208060 ATATAATATT
*
15208070 AAATAATATTAAAACTAATA
1 AAATAATATTAAAACAAATA
15208090 AAATAATATTAACAA-AAATA
1 AAATAATATTAA-AACAAATA
15208110 AA
1 AA
15208112 TTTAGATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAATATTAAAACAAATA
Found at i:15208203 original size:21 final size:21
Alignment explanation
Indices: 15208174--15208236 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
15208164 TTTAAAACTA
15208174 TTAA-ATTATTAAATTAATAT
1 TTAATATTATTAAATTAATAT
** *
15208194 TTTGTATTATTAAATTAGTAT
1 TTAATATTATTAAATTAATAT
* *
15208215 TTAATATGATTAAATTATTAT
1 TTAATATTATTAAATTAATAT
15208236 T
1 T
15208237 AATTAACTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
20 2 0.06
21 33 0.94
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
TTAATATTATTAAATTAATAT
Found at i:15208525 original size:59 final size:59
Alignment explanation
Indices: 15208420--15208548 Score: 150
Period size: 59 Copynumber: 2.2 Consensus size: 59
15208410 AATCTAATTG
* * * ** **
15208420 AACCTTTATATTATTATTGCATCTAAATAAGTTCTTCAACTCTTATTTTTTACTATCTA
1 AACCCTTATACTATTATTGCATCTAAACAAGCCCTTCAACTCTTATTTTCCACTATCTA
* * * * *
15208479 ATCCCTTATACTATTATTGCATCTAAACATGCCCTTTAATTTTTATTTTCCACTATCTA
1 AACCCTTATACTATTATTGCATCTAAACAAGCCCTTCAACTCTTATTTTCCACTATCTA
15208538 AACCCTTATAC
1 AACCCTTATAC
15208549 GGTTAAATTA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (59 bp):
AACCCTTATACTATTATTGCATCTAAACAAGCCCTTCAACTCTTATTTTCCACTATCTA
Found at i:15208788 original size:28 final size:28
Alignment explanation
Indices: 15208730--15208786 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
15208720 AAAATAACAA
**
15208730 TATATAAAATTAATAAAAAGTCTATATT
1 TATATAAAATTAATAAAAAGGATATATT
15208758 TATATGAAAATTAATAAAAAAGGAT-TATT
1 TATAT-AAAATTAAT-AAAAAGGATATATT
15208787 ATTTGATACC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.20
29 13 0.52
30 7 0.28
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (28 bp):
TATATAAAATTAATAAAAAGGATATATT
Found at i:15209613 original size:13 final size:12
Alignment explanation
Indices: 15209575--15209615 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
15209565 CTAAAAGAAG
15209575 TAATTTTAGTGAT
1 TAATTTTAG-GAT
*
15209588 TAAATTTAGGAT
1 TAATTTTAGGAT
15209600 TAATTTTAGAGAT
1 TAATTTTAG-GAT
15209613 TAA
1 TAA
15209616 GTTGTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TAATTTTAGGAT
Found at i:15210826 original size:16 final size:17
Alignment explanation
Indices: 15210805--15210836 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15210795 GTTTTAAGTT
15210805 TATGCAC-TTTATTTTA
1 TATGCACTTTTATTTTA
15210821 TATGCACTTTTATTTT
1 TATGCACTTTTATTTT
15210837 TTTGCTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.22, C:0.12, G:0.06, T:0.59
Consensus pattern (17 bp):
TATGCACTTTTATTTTA
Found at i:15216882 original size:21 final size:21
Alignment explanation
Indices: 15216858--15216898 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15216848 TTTCTTGCAC
*
15216858 AATTTTCAACGTAATTTCAAA
1 AATTTTCAACGAAATTTCAAA
*
15216879 AATTTTCAATGAAATTTCAA
1 AATTTTCAACGAAATTTCAA
15216899 GAATCTTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (21 bp):
AATTTTCAACGAAATTTCAAA
Found at i:15218328 original size:19 final size:19
Alignment explanation
Indices: 15218306--15218346 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
15218296 TTTTTTCTCG
15218306 TTTTTTATT-TTTTTCTTTC
1 TTTTTT-TTCTTTTTCTTTC
15218325 TTTTTTTTCTTTTTCTTTC
1 TTTTTTTTCTTTTTCTTTC
15218344 TTT
1 TTT
15218347 CCTCCTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTTCTTTTTCTTTC
Found at i:15218343 original size:10 final size:10
Alignment explanation
Indices: 15218315--15218346 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
15218305 GTTTTTTATT
15218315 TTTTTCTTTC
1 TTTTTCTTTC
15218325 TTTTT-TTTC
1 TTTTTCTTTC
15218334 TTTTTCTTTC
1 TTTTTCTTTC
15218344 TTT
1 TTT
15218347 CCTCCTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:15225452 original size:26 final size:26
Alignment explanation
Indices: 15225418--15225470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15225408 AAATTAGGAA
*
15225418 AAATGTGATATGAAATTGAAATATAT
1 AAATGTGATACGAAATTGAAATATAT
*
15225444 AAATGTGATACGAAATTGATATATAT
1 AAATGTGATACGAAATTGAAATATAT
15225470 A
1 A
15225471 TAAGTAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.49, C:0.02, G:0.15, T:0.34
Consensus pattern (26 bp):
AAATGTGATACGAAATTGAAATATAT
Found at i:15225634 original size:24 final size:24
Alignment explanation
Indices: 15225582--15225635 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
15225572 TTAATTGGCC
**
15225582 CTTTTTTTTCTTTTTATTTTTTAA
1 CTTTTTTAGCTTTTTATTTTTTAA
* * *
15225606 TTTTTTTAGCTTTTTGTTTTTTTA
1 CTTTTTTAGCTTTTTATTTTTTAA
15225630 CTTTTT
1 CTTTTT
15225636 CCTTTTACAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.80
Consensus pattern (24 bp):
CTTTTTTAGCTTTTTATTTTTTAA
Done.