Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 72 of 113
Found at i:16466928 original size:71 final size:69
Alignment explanation
Indices: 16466566--16467791 Score: 317
Period size: 71 Copynumber: 17.7 Consensus size: 69
16466556 AAATGATTAC
* * * * ** * * *
16466566 GATTAAACAAAGAGTCAAAAAATGAAAACGATCGGGATTAAACCACCAATCAGAAAA-AAAAATG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAA-A
* *
16466630 ACTGG
65 AATAG
** * * * * ** * * * **
16466635 GATTAAACCACAAATGAGAAAATAAAAATGAGCAAGATTAAACCATGAGTCAGAAAATGAACATG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAAAA
***
16466700 ACCC
66 ATAG
* * * * * *
16466704 GATTAAACCACGAGTTCA-AAAATGAAAATTACCAGGATTAAACCTTGAG-TACAAAA-AAGAAA
1 GATTAAACCATGAG-TCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAAAATAA-AAA
16466766 AAGTATCAG
64 AA--AT-AG
* * * *
16466775 GATTAAACCATGGGTGAGAAAATAAAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAATA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAAAA
*
16466840 ATCG
66 ATAG
* **
16466844 AGATTAAACCATGAGTCAGAAAATGAAAATGATTGGGATTAAACCGCG-GCTTAGAAAATAAAAA
1 -GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAG-TTAGAAAATAAAAA
16466908 ACAACTAG
64 A-AA-TAG
* ** * *
16466916 GATTAAACCATGAGTTAGAAAATGAAAAATGATCGAAATTAAACCATGAGTCAAAAAATAAAAAA
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAAA
*
16466981 GATTAG
65 -AATAG
* * ** * ** * **
16466987 GATTAAACCATGACTCAAAAAATGAAAACAATTGAAATTAAATCATGAGACAGAGAAA-AGAAAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGA-AAATA-AAAA
* *
16467051 GTATTAG
64 -AAATAG
* * * * ** ** * *
16467058 GATTAAATCACGAGTCAAAAAATAAAAACAATCAAGATTAAA-AATGA---A-AACAATTGAAAT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAA-AA-T-AAAA
*
16467118 TAAAT--
63 AAAATAG
* * * * * ** * * * * * *
16467123 CATGAGA-CA-GAG--A-AAAGA-AAAG-T-ATTAGGATTAAATCACGGGTCAAAAAATAAAAAC
1 GATTAAACCATGAGTCAGAAA-ATGAAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAAA
*
16467180 AATCAA
65 AAT-AG
* * * *** * *
16467186 GATTAAACCACGCGTCAAAAAATGGAGAAAACT-ATCATAATTAAA--TTGCAAGTTAGAAAATG
1 GATTAAACCATGAGTCAGAAAAT---GAAAA-TGATCGGGATTAAACCATG--AGTTAGAAAATA
**
16467248 AAAATGATCAG
60 AAAAAAAT-AG
* * * * * ** * **
16467259 AATTAAATCATGAATCAAAAAATGAAAATGACCAAGATTAAACCATGAGTGAG-AAA-AAAATGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAAAA
*
16467322 TTAG
66 ATAG
* * * ** * *
16467326 GATTAAACCATGAGTCAAAAAATAAAAAAGATATGGATTAAACCATGAGTCAG-AAATGAAAATA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAAAAT-AAAAAA
***
16467390 ACCGG
65 AATAG
* * ** * * * *
16467395 GATTATACCATGAGTTAGAAAATGAAAATGATCAAGTTTAAATCATGAGTCA-AGAAATAAAAAT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGA-AAATAAAAAA
* *
16467459 GATCGG
65 AAT-AG
* * * * ** *
16467465 GATTAAATCATAAGCCAAAAAATGAAAAATGATTAGGATTAAACCATGAGTTAGAAAATAAAAAT
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAAA
* *
16467530 GATCG
65 AATAG
* ** * * *
16467535 AGAATAAACCACCAG-CTAGAAAAAGAAAAATGA-CTAGGATTAAACCATGAGTTAAAAAATAAA
1 -GATTAAACCATGAGTC-AGAAAATG-AAAATGATC-GGGATTAAACCATGAGTTAGAAAATAAA
** *
16467598 AATGATCG
62 AAAAATAG
* * * * * ** *
16467606 AGATTAAACTACGAGTCAAAAAATGAAAAGGACCTAGATTAAATCACAT--GTTAGAAAATGAAA
1 -GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAA-C-CATGAGTTAGAAAATAAAA
** *
16467669 ATGATCGG
63 AAAAT-AG
* * * * * *
16467677 GATTAAACCAAGAGTCAGAAAAAGAAAAATGATTGCGATTAAACCACGA--TAGTGAAA-AAAAA
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGGGATTAAACCATGAGTTAG-AAAATAAAAA
** *
16467739 TGATCAA
64 AAAT-AG
* * * * *
16467746 GATTAAACCACGATTCAAAAAATGAAAATGACCGAGATTAAACCAT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCAT
16467792 TAGTCAAAAA
Statistics
Matches: 873, Mismatches: 218, Indels: 133
0.71 0.18 0.11
Matches are distributed among these distances:
58 10 0.01
59 2 0.00
60 12 0.01
61 3 0.00
62 3 0.00
63 9 0.01
64 4 0.00
65 7 0.01
66 3 0.00
67 54 0.06
68 34 0.04
69 175 0.20
70 193 0.22
71 266 0.30
72 51 0.06
73 47 0.05
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.20
Consensus pattern (69 bp):
GATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGAGTTAGAAAATAAAAAAA
ATAG
Found at i:16467107 original size:93 final size:93
Alignment explanation
Indices: 16467004--16467192 Score: 369
Period size: 93 Copynumber: 2.0 Consensus size: 93
16466994 CCATGACTCA
16467004 AAAAATGAAAACAATTGAAATTAAATCATGAGACAGAGAAAAGAAAAGTATTAGGATTAAATCAC
1 AAAAATGAAAACAATTGAAATTAAATCATGAGACAGAGAAAAGAAAAGTATTAGGATTAAATCAC
16467069 GAGTCAAAAAATAAAAACAATCAAGATT
66 GAGTCAAAAAATAAAAACAATCAAGATT
16467097 AAAAATGAAAACAATTGAAATTAAATCATGAGACAGAGAAAAGAAAAGTATTAGGATTAAATCAC
1 AAAAATGAAAACAATTGAAATTAAATCATGAGACAGAGAAAAGAAAAGTATTAGGATTAAATCAC
*
16467162 GGGTCAAAAAATAAAAACAATCAAGATT
66 GAGTCAAAAAATAAAAACAATCAAGATT
16467190 AAA
1 AAA
16467193 CCACGCGTCA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 95 1.00
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.19
Consensus pattern (93 bp):
AAAAATGAAAACAATTGAAATTAAATCATGAGACAGAGAAAAGAAAAGTATTAGGATTAAATCAC
GAGTCAAAAAATAAAAACAATCAAGATT
Found at i:16468615 original size:101 final size:103
Alignment explanation
Indices: 16468450--16468728 Score: 395
Period size: 101 Copynumber: 2.7 Consensus size: 103
16468440 AATGAACAAA
16468450 ATTAAACCATGAGTCAGAAATAAAAATGATCGGGATTAAACCACCAGTTAGAAAATGAATACGGC
1 ATTAAACCATGAGTCAGAAATAAAAATGATCGGGATTAAACCACCAGTTAGAAAATGAATACGGC
16468515 TGGGATTAAACCCCAATCAAAAAATGAAAATGATCGAG
66 TGGGATTAAACCCCAATCAAAAAATGAAAATGATCGAG
* * *
16468553 ATTAAACTATGAGTCAGTAA-AAAAA-GATCGGGATTATACCACCAGTTAGAAAATGAATACGGC
1 ATTAAACCATGAGTCAGAAATAAAAATGATCGGGATTAAACCACCAGTTAGAAAATGAATACGGC
*
16468616 TGGGATTAAACCCCAATCAAAAAATGAAAATGATCGGG
66 TGGGATTAAACCCCAATCAAAAAATGAAAATGATCGAG
* * * ** *
16468654 ATTAAACCACT-AGTCAAAAAATGAAAATGAT-GTAGATTAAACCATGAGTTAGAAAATGAAAAC
1 ATTAAACCA-TGAGTC-AGAAATAAAAATGATCG-GGATTAAACCACCAGTTAGAAAATGAATAC
**
16468717 GATTGGGATTAA
63 GGCTGGGATTAA
16468729 CCATGACTCA
Statistics
Matches: 156, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
101 86 0.55
102 9 0.06
103 23 0.15
104 38 0.24
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (103 bp):
ATTAAACCATGAGTCAGAAATAAAAATGATCGGGATTAAACCACCAGTTAGAAAATGAATACGGC
TGGGATTAAACCCCAATCAAAAAATGAAAATGATCGAG
Found at i:16470897 original size:24 final size:24
Alignment explanation
Indices: 16470870--16470918 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
16470860 AAATCATGAG
* *
16470870 TCAAAAAATGAGAACGACCGAGAT
1 TCAAAAAATGAAAACAACCGAGAT
*
16470894 TCAAAAAATGAAAACAACTGAGAT
1 TCAAAAAATGAAAACAACCGAGAT
16470918 T
1 T
16470919 AAACCACGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.16
Consensus pattern (24 bp):
TCAAAAAATGAAAACAACCGAGAT
Found at i:16471337 original size:29 final size:29
Alignment explanation
Indices: 16471292--16471356 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
16471282 TCAGAAAATG
* *
16471292 AAAATGATCGAGGTTAAA-CTACTAGTGAA
1 AAAATGATCGAGATTAAATC-ACGAGTGAA
* *
16471321 AAAATGATTGAGATTAAATCACGAGTGAG
1 AAAATGATCGAGATTAAATCACGAGTGAA
16471350 AAAATGA
1 AAAATGA
16471357 AAATGATCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 30 0.97
30 1 0.03
ACGTcount: A:0.48, C:0.08, G:0.22, T:0.23
Consensus pattern (29 bp):
AAAATGATCGAGATTAAATCACGAGTGAA
Found at i:16471337 original size:64 final size:64
Alignment explanation
Indices: 16471198--16471392 Score: 205
Period size: 64 Copynumber: 2.9 Consensus size: 64
16471188 AAATGACCAG
* * *
16471198 GATTAAACCACAAGTCAGAAAATGAAAATGAACGGGATTAAACCACAAGTTAAAAAATAGAAATG
1 GATTAAACCACAAGTCAGAAAATGAAAATGATCGGG-TTAAACCACTAGTCAAAAAAT-G-AATG
16471263 ATT
63 A-T
* * * *
16471266 CGAATTAAACCACTAGTCAGAAAATGAAAATGATCGAGGTTAAACTACTAGTGAAAAAATGATTG
1 -G-ATTAAACCACAAGTCAGAAAATGAAAATGATCG-GGTTAAACCACTAGTCAAAAAATGAATG
16471331 A-
63 AT
* * *
16471332 GATTAAATCACGAGTGAGAAAATGAAAATGATCGTGGTTAAACCA-TGAGTCAAAAAATGAA
1 GATTAAACCACAAGTCAGAAAATGAAAATGATCG-GGTTAAACCACT-AGTCAAAAAATGAA
16471393 AAGGACCTGG
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
63 1 0.01
64 51 0.46
65 1 0.01
68 4 0.04
69 2 0.02
70 49 0.45
71 2 0.02
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.21
Consensus pattern (64 bp):
GATTAAACCACAAGTCAGAAAATGAAAATGATCGGGTTAAACCACTAGTCAAAAAATGAATGAT
Found at i:16472561 original size:120 final size:121
Alignment explanation
Indices: 16472348--16472566 Score: 282
Period size: 120 Copynumber: 1.8 Consensus size: 121
16472338 AAAATGACTT
* *** *
16472348 AGATTAAACCATGATTCAAAAAATGAAAATGACCCAGATTAAACCATGAGTTAGAAAATGAAGAC
1 AGATTAAACCATAATTCAAAAAATGAAAATGACCCAGATTAAACCATGAAAGAGAAAATGAAAAC
* ** *
16472413 AGTCGAGATTAAACCATGAGTC-AAAAAAAGAAAAATGACTAAAAGAAAATAATCG
66 AGTCAAGATTAAACCACCAGCCAAAAAAAAGAAAAATGACTAAAAGAAAATAATCG
* **
16472468 AGATTAAACCATAATTCCAAAAATGAAAATGA-CGGGTATTAAACCATGAAAGAGAAAATGAAAA
1 AGATTAAACCATAATTCAAAAAATGAAAATGACCCAG-ATTAAACCATGAAAGAGAAAATGAAAA
*
16472532 C-GATCAAGATTAAACCACCAGCCAGAAAAAAGAAA
65 CAG-TCAAGATTAAACCACCAGCCAAAAAAAAGAAA
16472567 TGATGGAGAT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 3 0.04
120 70 0.84
121 10 0.12
ACGTcount: A:0.54, C:0.14, G:0.16, T:0.17
Consensus pattern (121 bp):
AGATTAAACCATAATTCAAAAAATGAAAATGACCCAGATTAAACCATGAAAGAGAAAATGAAAAC
AGTCAAGATTAAACCACCAGCCAAAAAAAAGAAAAATGACTAAAAGAAAATAATCG
Found at i:16474701 original size:103 final size:104
Alignment explanation
Indices: 16474502--16474736 Score: 241
Period size: 103 Copynumber: 2.2 Consensus size: 104
16474492 AATGGCTGGG
* * *
16474502 ATTAAACTAGGAGTCAAAAAATGAAAATGACTAGGATTAAACCATGATTCAGAAAAAGAAAATGA
1 ATTAAACCATGAGTC-AAAAATGAAAACGACTAGGATTAAACCATGATTCAGAAAAAGAAAATGA
* * *
16474567 CTTAGATTAAACTACAAGTAGGAAAATAAAAACAA-CTAGG
65 CTTAGATTAAACCACAAGTAGAAAAATAAAAACAATC-AGA
* *
16474607 GTTAAACCATGAGTCAAAAATGAAAACGGCTAGGATTAAA-CACT-A-TCAGAAAAAGAAAAATG
1 ATTAAACCATGAGTCAAAAATGAAAACGACTAGGATTAAACCA-TGATTCAGAAAAAG-AAAATG
* **
16474669 A-TTGGGATTAAACCACAA-TCA-AAAAATGAAAAATGATCAGA
64 ACTT-AGATTAAACCACAAGT-AGAAAAAT-AAAAACAATCAGA
*
16474710 ATTAAACCATGAGTCAGAAAATCAAAA
1 ATTAAACCATGAGTCA-AAAATGAAAA
16474737 TGATCAAAAT
Statistics
Matches: 110, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
102 18 0.16
103 46 0.42
104 34 0.31
105 12 0.11
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (104 bp):
ATTAAACCATGAGTCAAAAATGAAAACGACTAGGATTAAACCATGATTCAGAAAAAGAAAATGAC
TTAGATTAAACCACAAGTAGAAAAATAAAAACAATCAGA
Found at i:16475405 original size:71 final size:70
Alignment explanation
Indices: 16475319--16475663 Score: 216
Period size: 71 Copynumber: 4.9 Consensus size: 70
16475309 ATCCATGAGT
* *
16475319 TAGAAAATG-AAAATGATCGAGATTAAATCACGAGTAAAAAAATAAAAACT-ACTGGGAA-TAAA
1 TAGAAAA-GAAAAATGATCGAGATTAAACCACGAGTAAAAAAATAAAAA-TGACT-AGAATTAAA
16475381 CCACCA-A
63 CCACCAGA
* * ** *
16475388 TCAAGAAAAGAAAAATGACCGAGATTAAACCATGAGGCAAAAAATGAAAATGACTAGAATTAAAC
1 T--AGAAAAGAAAAATGATCGAGATTAAACCACGAGTAAAAAAATAAAAATGACTAGAATTAAAC
16475453 CACCAGA
64 CACCAGA
* * * *
16475460 TAGAAAATAAAAATGAT-TAGGATTAAACCACCAGTCAAAAAAATTAAAATGACCTAG-ATTAAA
1 TAGAAAAGAAAAATGATCGA-GATTAAACCACGAGT-AAAAAAATAAAAATGA-CTAGAATTAAA
* *
16475523 CTATCA-A
63 CCACCAGA
* * ** * *
16475530 TTAGAAAATG-AAAACGA-CTAAGATTAAACCACGAGT-CCAAAA-AAAAA-GACAAGGATTAAA
1 -TAGAAAA-GAAAAATGATC-GAGATTAAACCACGAGTAAAAAAATAAAAATGACTAGAATTAAA
**
16475590 CCATGAG-
63 CCACCAGA
* * * * * *
16475597 TAAGAAAATG-AAGACGATCGGGATTAAACCACGAGTCAAAAAATGAAAATGA-TCAAAATTAAA
1 T-AGAAAA-GAAAAATGATCGAGATTAAACCACGAGTAAAAAAATAAAAATGACT-AGAATTAAA
16475660 CCAC
63 CCAC
16475664 AAGTCATAAA
Statistics
Matches: 218, Mismatches: 37, Indels: 41
0.74 0.12 0.14
Matches are distributed among these distances:
66 4 0.02
67 41 0.19
68 9 0.04
69 10 0.05
70 44 0.20
71 103 0.47
72 7 0.03
ACGTcount: A:0.54, C:0.14, G:0.15, T:0.17
Consensus pattern (70 bp):
TAGAAAAGAAAAATGATCGAGATTAAACCACGAGTAAAAAAATAAAAATGACTAGAATTAAACCA
CCAGA
Found at i:16476601 original size:175 final size:172
Alignment explanation
Indices: 16472657--16501138 Score: 2767
Period size: 176 Copynumber: 163.1 Consensus size: 172
16472647 TAAATCACAT
* * * **
16472657 GTCAAAAAATGAAAATGATCAGGATTAAACCATGAGTTAGAAAAAGAAAAACAACCT-AGATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCA-AAAAATAAAAATGA-CTAAGATT-A
* * * * * *
16472721 AACCATGTGTCAAAAAATAAAAATGATCAAG-ATTAAACCACGAGTTAGAAAATGAAAATGATC-
63 AACCATGAGTCAGAAAATGAAAATAAT-AAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CA
* * ** * *
16472784 GAGTATAAACCATGAGGGAGAAAAA-GAAAATGACTG-GAATTAAATTACGT
125 GAAT-TAAATCATGAGTCA-AAAAATGAAAATGAC-GAG-ATTAAATTATGA
* * * * ** * *
16472834 GTTAGAAAATGAAAATGATCAAGATTAAACCACAAGTCAAAAAATGAAAATGA-TCGAGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAAA
** ** * * * * *
16472898 CCGCGAGTCAGAAAACAAAAAATGATGAGGATTAAATCA-TGAGTCAGAAAGTGAAAATGATC-G
65 CCATGAGTCAGAAAA-TGAAAATAATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CAG
* * * * *
16472961 AACTAAATCATGAGTTAGAGAAAA-GAAAATGACCAGGAATAAATCATGA
126 AATTAAATCATGAGTCA-A-AAAATGAAAATGACGA-GATTAAATTATGA
* * * ** * * * *
16473010 GTTAAAAAATGAAAATGAACGGGATTAAATCACAAGTTAGAAAATGAAAATGATCGAA-ATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAAA
* * * ** * * *
16473074 TCATGAGTTAAAAAATGAAAATGAA-CGGGATTAAATCACGAGTCAGAAAATGAAAATGATC-GA
65 CCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CAGA
* ** * * * *
16473137 ATTAAATCATGAGTCAAAAAATAAAAACAATAGGGATTAAATCACGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * ** * **
16473184 GTCAAAAAATAAAAATGAAC-GAAATTAAATCATGAGTCAGAGGATAAAAGTGA-TGGGAATTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
* * * *
16473247 ACCAAGAGTCTA-AGAATGAAAACAAT-CGAGATTAAACCA-TGAGTCAAAAAATGAAAATGATC
64 ACCATGAGTC-AGAAAATGAAAATAATAAGA-ATTAAACCACT-AGTC-AAAAATGAAAATGA-C
* * * * ** *
16473309 A-AGATTAAAGCATGAGTCAGAAAATGAAAACGATC-AAATTAAACCATAA
124 AGA-ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * ** * * * *
16473358 GTCAAAAAATGAATA-CAACTGGGTTTAAATCACAAGTGAAGAAATAAAAATGATTGAGATTAAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * * * *
16473422 TCATAAGTTAGAAAATGGAAAATGAGT-AGGATTAAACCA-TGAATTATAAAATAAAAATGATCA
65 CCATGAGTCAGAAAAT-GAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CA
* * * * * * ** **
16473485 -AGATTAAACCAAGAGTTAGAAAATGAAAACGACTAGGATTAAACCACAA
125 GA-ATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * * * * * * *
16473534 GTTAGAAAAA-G--AATAACCTA-AATTAAACCATAAGTCAAAAAATGAAAATGATCT-GGATTA
1 GTCA-AAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTA
* * ** * * *
16473594 AACCACGAGTCAAAAAATGAAAATGACCAAG-ATTAAACCACCAGTCAAAAAAAGAAAAATGACC
63 AACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTC-AAAAATG-AAAATGACA
* * * * * *
16473658 GAGATTAAA-CTATAAGGCAAAAAATGAAAATGATTGAAATTAAACCT-CGA
125 GA-ATTAAATC-ATGAGTCAAAAAATGAAAATGA-CGAGATTAAA-TTATGA
* ** * ** * ***
16473708 GTCTGAAAAA-GAAAAACAATCAGGATTAAACCACAAGT--AAGAA-AAAAATGACCGGGATTAA
1 GTC-AAAAAATG-AAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
** * * * * * **
16473769 ACCACAAGTCAAAAAATGAAAACT-ACAAGGATTAAACCACGAGTAAGAAAATGAAAACAACCTA
64 ACCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-C-A
* * ** * ** *
16473833 G-ATTAAACCATGAGTCAGAAAATGAAAACAACTGGGATTAAACCACGA
125 GAATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * *
16473881 GTTAGAAAAAT-AATAATGAT-TGAGATTAAACCATGAGTGAGAAAAA-GAAAATGA-TCAAGAT
1 GTCA-AAAAATGAA-AATGATCAG-GATTAAATCATGAGTCA-AAAAATAAAAATGACT-AAGAT
** * * * * **
16473942 TAAACCACAAGTCAAAAAATGAAAATGAACAAG-ATTAAACCACCAGTAAACAAATGAAAACAAT
61 TAAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCAA-AAATGAAAATGA-
* * * ** *
16474006 C-GAGATAAAACCATGAGTCAGAAAATGAAAACTGACGGAGATTAAACCAAGA
123 CAGA-ATTAAATCATGAGTCAAAAAATGAAAA-TGAC-GAGATTAAATTATGA
* * * * ** * * *
16474058 GTTAGAAAATTAAAATGACCAAAATTAAATCATGAGTTAGAGAAAAGAAAACA--AC-ATGGATT
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCA-A-AAAATAAAA-ATGACTA-AGATT
* * * *
16474120 AAAACACA-G-GTCAAAAAATGAAAATGAT-CGAGATGAAACCA-TGAGTCAAAAAATGAAAATG
62 -AAAC-CATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACT-AGTC-AAAAATGAAAATG
** * * * * * * **
16474181 ATTGAAACTAAATCACGAGTCAAAAAAT-AAAAAGAATAGGGATTAAATCACAA
122 ACAG-AATTAAATCATGAGTCAAAAAATGAAAATG-A-CGAGATTAAATTATGA
* * * *
16474234 GTCAAAAAATAAAAATGA-CTAGGATTAAA-CTGTGAGTCAAAAAATGAAAATGAAC-AAAATTA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATC-ATGAGTCAAAAAATAAAAATG-ACTAAGATTA
** * * * * * ** *
16474296 AATTATGAGTTAGAAATTAAAAATGAT-CGAGATTAAACCAAGAGTCAAAAAATG-AAACGACCA
63 AACCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACTAGTC-AAAAATGAAAATGA-CA
* * * * ** *
16474359 TG-ATTAAA-CTATGAGT-TAGAAATTAAATTTGATC-ATTTTTAAATCATGA
125 -GAATTAAATC-ATGAGTCAAAAAATGAAA-ATGA-CGA-GATTAAATTATGA
* * ** * * *
16474408 GTCAAGAAGTGAAAACAATC-GAGATTAAATCAT-AGGGCAGACAATGAAAAATGACT-AGAATT
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGA-GTCAAAAAAT-AAAAATGACTAAG-ATT
** * ** * * * **
16474470 AAACCACAAGTTAGAAAATGAAAATGGCT-GGGATTAAACTAGGAGTCAAAAAATGAAAATGACT
62 AAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTC-AAAAATGAAAATGAC-
* * * * * **
16474534 AGGATTAAACCATGATTCAGAAAAA-GAAAATGACTTAGATTAAACTACAA
124 AGAATTAAATCATGAGTCA-AAAAATGAAAATGAC-GAGATTAAATTATGA
* ** * * * * * * *
16474584 GT-AGGAAAAT-AAAAACAACTAGGGTTAAACCATGAGTC-AAAAATGAAAACGGCTAGGATTAA
1 GTCA-AAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * ** * *
16474646 A-CACT-A-TCAGAAAAAGAAAAATGATTGGGATTAAACCAC-AATCAAAAAATGAAAAATGATC
64 ACCA-TGAGTCAGAAAATG-AAAATAATAAGAATTAAACCACTAGTC-AAAAATG-AAAATGA-C
* * * * * * **
16474707 AGAATTAAACCATGAGTCAGAAAATCAAAATGATCAAAATTAAATCACAA
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * *
16474757 GTCAGAGAAAA-GAACATGA-CTAGGATTAAATCATTG-GTCAGAAAATGAAAA-CACCCAAGAT
1 GTCA-A-AAAATGAAAATGATC-AGGATTAAATCA-TGAGTCAAAAAATAAAAATGA-CTAAGAT
* ** * ** ** * * *
16474818 TAAATCACAAGTCAAAAAATGAATGCTACCAA-AATTAAATCACGAGTCAAAAAATGAAAACGAC
61 TAAACCATGAGTCAGAAAATGAA-AATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGAC
* * * * * * * * **
16474882 AAGGATTAAATCACGACTCAAAAACTGAAAATGAACTAAAATAAATCACAA
124 -AGAATTAAATCATGAGTCAAAAAATGAAAATG-ACGAGATTAAATTATGA
* ** * * * * ** * * **
16474933 GTCAGAGGATGAAAAT-AACAAGAATT-AAGCAAGAGTGTAAGAATGAAAATGACTGGGATTAAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * * * *
16474996 CCCTAAGTCAAAAAATGAAAATGAT-TGTATTTAAATCACAAGTCATAAAATGAAAATGATCA-A
65 CCATGAGTCAGAAAATGAAAATAATAAG-AATTAAACCACTAGTCA-AAAATGAAAATGA-CAGA
* * * * ** **
16475059 GCTTAAATGATGAGTTAGAAAATGAAAACAATCGAGATTAAACCATGA
127 -ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * ** *
16475107 GTTAAAAAATG-AAACGACCAGGATTAAACCATAAGTCTAAAAATGAATACAAT--C-GGGCTTA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAAT-AA-A-AATGACTAAGATTA
* ** * * * * * * *
16475168 AATCACAAGCCA-AGAAATGAAAATAACT-TGGATTAAATCA-TGAATAAGAAAATAAAAAATGA
63 AACCATGAGTCAGA-AAATGAAAATAA-TAAGAATTAAACCACT-AGTCA-AAAAT-GAAAATGA
* ** * * * ** *
16475230 CCA-AGATTAAACCACAAGTCAAAAAATGAAAATTATC-AGGCTCAAAGCAGGA
123 -CAGA-ATTAAATCATGAGTCAAAAAATGAAAATGA-CGA-GATTAAATTATGA
* * * * *
16475282 GTCAGAAAATGAAAATGA--AGGAGATT-AATCCATGAGTTAGAAAATGAAAATGA-TCGAGATT
1 GTCAAAAAATGAAAATGATCA-G-GATTAAAT-CATGAGTCAAAAAATAAAAATGACT-AAGATT
* * * * * * ** * * *
16475343 AAATCACGAGTAAAAAAATAAAAACTACTGGGAA-TAAACCACCAATCAAGAAAAGAAAAATGAC
62 AAACCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACTAGTCAA-AAATG-AAAATGAC
* * * * ** **
16475407 CGAGATTAAACCATGAGGCAAAAAATGAAAATGACTAGAATTAAACCACCA
124 AGA-ATTAAATCATGAGTCAAAAAATGAAAATGACGAG-ATTAAATTATGA
* * * * ** *
16475458 GAT-AGAAAATAAAAATGATTAGGATTAAACCACCAGTCAAAAAAATTAAAATGACCT-AGATTA
1 G-TCAAAAAATGAAAATGATCAGGATTAAATCATGAGTC-AAAAAATAAAAATGA-CTAAGATTA
* * * * * * *
16475521 AACTATCAATTAGAAAATGAAAACGACTAAG-ATTAAACCACGAGTCCAAAAA--AAAA-GACAA
63 AACCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACTAGT-CAAAAATGAAAATGAC-A
* * * * * ** *
16475582 GGATTAAACCATGAGT-AAGAAAATGAAGACGATCGGGATTAAACCACGA
125 GAATTAAATCATGAGTCAA-AAAATGAAAATGA-CGAGATTAAATTATGA
** * ** * *
16475631 GTCAAAAAATGAAAATGATCAAAATTAAACCACAAGTCATAAAAACAAAAAT-A-TCAAAATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCA-AAAAATAAAAATGACT-AAGATTAA
* * * * * * * * *
16475694 A-GAGCGAGTGAG-AAA--AAAATGACT-AGGACTAAATCA-TGGGTCAGAAAATGAAAACGATC
64 ACCA-TGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-C
* * * * * * * *
16475753 AGGATTAAACCATGAGTTAGAAAATAAAAATGACGAAAATTAAATTACGT
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGACG-AGATTAAATTATGA
* * * ** * * * * *
16475803 G-CCAAAAATAAAAACGA-CAAGGATTAAATCACAAGTCAGAAAATGAAAATGACCAAAATAAAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * * *
16475866 TCATAAGTTA-AAGAATGAAAATGACAGGAATTAAACCACAAGTCAAAAAATGAAAATGACAAGA
65 CCATGAGTCAGAA-AATGAAAATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGAC-AGA
* * * * * * * * **
16475930 ACTAAA-CGACGAGTC-AAAAATAAAAAAGACCAAAATAGAATCACCA
127 ATTAAATC-ATGAGTCAAAAAATGAAAATGACGAGATTA-AATTATGA
* * * ** * * * * *
16475976 GTTAGAAAATGAAAATAATGGGGATTAAACCATGAGTCAGAAAATAAAAACGATTGAGATTAAAC
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
* * * * *
16476041 CATGAGTTCA-AAAATGAAAATGATTAA-AATTAAAGCA-TAAGTTAGAAAATGAATACGATCAG
66 CATGAG-TCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CAG
** * **
16476103 GTTTAAA-CTATGAATCAAAAAATGAAAATGACTGAGATTAAACCATGA
126 AATTAAATC-ATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * *
16476151 GTCAAAAAATAAAAATGATCGGGATTAAATCATGAGTCAAAAAATGAAAAATAACTAAGAATAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAAT-AAAAATGACTAAGATTAAA
* * * * **
16476216 CCATGAGTCAGAATATCAAAATAATCAA-AATTAAATCA-TGAATCAGAGAAA--AAAATGATGG
65 CCATGAGTCAGAAAATGAAAATAAT-AAGAATTAAACCACT-AGTCA-A-AAATGAAAATGACAG
* * * * * *
16476277 GATTAAATCACGGGTCAAAAAAATGAAAATGACCATAATTAAATT-TCA
126 AATTAAATCATGAGTC-AAAAAATGAAAATGACGA-GATTAAATTATGA
* * * * * *
16476325 CGTCAAAAAATGAAAAGGAT-AGGGAATAAATCATGAGACAAAAAATGAAAATGACCAAAATTAA
1 -GTCAAAAAATGAAAATGATCA-GGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * * ***
16476389 ATCATGAGTCAGAGAATGAAAATGACGGGAATTAAACCACTAGTCAAAAATTGAAAATGAACAGA
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCAAAAA-TGAAAATG-ACAGA
*
16476454 ATTAAATCATGAGTCAAAAAATGGAAATGATCGAGATTAAATTATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * *
16476501 GTCAAAAAATGAAAATGATCAGGATTAAAGCATGAGTCAAAAAATAAAAATGACTAGGTTTAAAC
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
* * * * * *
16476566 CATAAGTTAGAAAATGAATATAATAAGATTTAAACCACGAGTCAAAAAATGAAAATTACTAGAAT
66 CATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGAC-AGAAT
** * * * * **
16476631 TAAATCACAATTCAGAAAATAAAAAATGACTAGGATTAAACCATGA
129 TAAATCATGAGTCAAAAAAT-GAAAATGACGA-GATTAAATTATGA
* * * * * * ** *
16476677 CTCATAAAATGAAAATTA-CTAAGATTAAACTACA--AGCCAAAAAATGAAACAA--AATCGGGG
1 GTCAAAAAATGAAAATGATC-AGGATTAAA-T-CATGAGTCAAAAAAT-AAA-AATGACT-AAGA
* * * * *
16476737 TTAAACCACT-AGTCAAAAAATAAAAAATAACAGAGAA-TAAACC-CAAAGTCAAAAAATG-AAG
60 TTAAACCA-TGAGTCAGAAAAT-GAAAATAATA-AGAATTAAACCAC-TAGTC-AAAAATGAAAA
* * * * * * ** *
16476798 CGACTAGGATTAAACCAAT-AGTCAAAAAAAGAAAAACGATCGAAATTAAACCATAA
120 TGAC-AGAATTAAATC-ATGAGTCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
* ** * **
16476854 GTCAAAAAATGAAAATGACCAGGATTAAATCACAAGTCAAAAAATGAAAAATTA-TGGGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAAT-AAAAATGACTAAGATTAAA
* * * * * *
16476918 ACATGAGTCAAAAAATCAAAATAACCT-A-AATCAAATCA-TGAGTCAGAGAAAAGAAAATGAC-
65 CCATGAGTCAGAAAATGAAAATAA--TAAGAATTAAACCACT-AGTCA-A-AAATGAAAATGACA
*** * * * * * ** *
16476979 ----TGGGTCACGGGTTAGAAAATGAAAACGATC-AGGATTAAACCATAA
125 GAATTAAATCATGAGTCAAAAAATGAAAATGA-CGA-GATTAAATTATGA
* * * * *
16477024 GTCACAAAATGAAAATGATC-GAAATTAAATCATGAGTCAGAAAATAAAAAAGAC-AAGGACTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAA-GATTAA
* ** ** * * * *
16477087 ATCACAAGTCAGAAAATGAAAATGACCAA-AATTAAATCACGAGTTAGAGAATGAAAATGACGAG
64 ACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCA-AAAATGAAAATGAC-AG
** * * ** *
16477151 AATTAAATCACAAGTCAAAAAATGCAAACAACT-AGGATTATTAAACCACGA
126 AATTAAATCATGAGTCAAAAAATG--AA-AA-TGACGA-GATTAAATTATGA
* ** * * * * * **
16477202 GTCAAAAAATGAAAACGATCAAAATTAAAATTAAATCACGAGTTAAAAAATGAAAA-CAATCGGG
1 GTCAAAAAATGAAAATGATC------AGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAG
* * *
16477266 ATTAAACCATGAGTCA-AAGAATGAAAATGAT-AG-AGT-------TAG---AAAATGAAAACGA
59 ATTAAACCATGAGTCAGAA-AATGAAAATAATAAGAATTAAACCACTAGTCAAAAATGAAAATGA
* ** * * * * * * *
16477318 CAAGGATTAACCCATGAGTTAAAAAATCAATATGACCGGGTTTAAATCACGA
123 C-AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* ** * * ** * ** * *
16477370 GTCAAAAAATAAAAACAACCATGATTAAATCACAAGTCAAAAAAAGAAAAACAACCAAAATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTC-AAAAAATAAAAATGACTAAGATTAAA
* * * * * **
16477435 TCATGAGTCAAAAAATGAAAATGAT-CGAGATTAAACCA-TGAGTCAAAAAATGAAAACGATTGG
65 CCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACT-AGTC-AAAAATGAAAATGA-CAG
* * * **
16477498 GATTAAACCACGAGTCAAAAAATGAAAATGATCGAGATTAAACCATGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* ** * * * * *
16477546 GTCAAAAAATGAAAACGATTGGGATTAAA-CTATGAGTCAGAAAATGAATATGACTAGGTTTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATC-ATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * * * **
16477610 TCATGAGTTA-ATAAATGAAAACCACT--GGATTAAATCACGAGTCAAAAAGTGAAAAACAATCA
65 CCATGAGTCAGA-AAATGAAAA-TAATAAGAATTAAACCACTAGTCAAAAA-TG-AAAATGA-CA
** * * * ** **
16477672 GGTTTAAAACACGAGTCAAAAAATGAAAATGACTGGGATTAAACCACCA
125 GAATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * *
16477721 GTCAGAAAAA-GAAAAACGAT-TGAGATTAAACCATGAGTCACAAAATGAAATGACCGAGGTTAA
1 GTCA-AAAAATG-AAAATGATCAG-GATTAAATCATGAGTCAAAAAAT-AAA--A---A---TGA
* * * ** * *
16477784 CGATCGAGATTAAA-C-TGCTTGTCAGAAAAGGAAAA-ACCATTGGGATTAAACCA-TAAGTGAG
54 C--T-AAGATTAAACCATG--AGTCAGAAAATGAAAATA--ATAAGAATTAAACCACT-AGTCA-
* * * * * * * **
16477845 AAAAAGAAAATGACTGAGATTAGACCACGAGTCAAAAAATGAAAATGATTG-GCATTAAATCACA
110 AAAATGAAAATGACAGA-ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAG-ATTAAATTATG
16477909 A
172 A
* * * * * *
16477910 GTCAAAAAATGAAAAATGATCAAGATTAAACCATGGGTCAAAAAATCAAAATGA-TCAAAACTAA
1 GTCAAAAAATG-AAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * ** * * *
16477974 ATCATAAGTCAGATAAGA-GAAAATGACCAGGATTTAATCA-TAGGTCAAAAATTGAAAATGACT
64 ACCATGAGTCAGA-AA-ATGAAAATAATAAGAATTAAACCACTA-GTCAAAAA-TGAAAATGAC-
* ** * * *
16478037 ACG-GTTAAA-CTATGAGTCAAAAAATGAAAAAAAAACAAAATTAAATCATTG-
124 A-GAATTAAATC-ATGAGTCAAAAAATG--AAAATGACGAGATTAAATTA-TGA
* ** * * * * ** * *
16478088 GTCAAAGAAAAGAAAATGATTGGGATTAAATCATGGGTTAGAAAATGAAAACAACCAAGAGTAAA
1 GTCAAA-AAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* ** * * *
16478153 CCATGAGTCAGAAAGTGAAAATGACCAA-AACTAAATCC-CGAATCAAAAAATGAAAATGATC-G
65 CCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAA-CCACTAGTC-AAAAATGAAAATGA-CAG
* ** * * * * *
16478215 AGACTAAATCACAAGTCAAAAAATAAAAACGAATCAAAATTAAATCATGA
126 A-ATTAAATCATGAGTCAAAAAATGAAAATG-A-CGAGATTAAATTATGA
* * * * * * * *
16478265 GTTAGAGAATGAAAATGATCAAGATTAAA-CTAT-AGGTTAGAAAATGAAAATGA-TCGAGATTA
1 GTCAAAAAATGAAAATGATCAGGATTAAATC-ATGA-GTCAAAAAATAAAAATGACT-AAGATTA
* ** * * * * * * * *
16478327 AACCATGAGTCATAAAATGAAAACGACAGGGACTGAATCA-TGAGTTAAGAAA-CAAAAGTGACT
63 AACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTCAA-AAATGAAAA-TGAC-
* ** ** ** ** *
16478390 AGGATTAAATCACAAGTCAAAAAATGAAAAACAATTAGGATTAAACCACGA
124 AGAATTAAATCATGAGTCAAAAAATG-AAAATGACGA-GATTAAATTATGA
* * ** * * * *
16478441 GTGAGAAAATGAAAATGA-CTAGCTTTAAACCATAAGTCAAAAAATAAAGATGA-TCGAGATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* ** ** * * * *
16478504 A-C-TGAGTCAAAAAATG-AAACGACCAGGATTAAATCA-TGAGTTAAAAAATGAAAATGATCGG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AG-TCAAAAATGAAAATGA-CAG
* * * **
16478565 GATTAAACCATGAGTCAAAAAATGAAAACGAAC-AGGATTAAACCATGA
126 AATTAAATCATGAGTCAAAAAATGAAAATG-ACGA-GATTAAATTATGA
* * ** * * * * * *
16478613 GTTAGAAAATGAAAAACAGCCAAGATTAAACCATGAGTGAGAAAAA-GAAAATGA-TCGAGATTA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCA-AAAAATAAAAATGACT-AAGATTA
* ** ** * * * *
16478676 AACCATGAGTTAG-AAATGAAAACGACCAGCATT-AACCACAAGTTAGAAAATGAAAATGACTAA
63 AACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCA-AAAATGAAAATGAC-AG
* ** ** * * * ** *
16478739 AATTAAACCACAAGTCAAAAAATGAAAAACAACCAAAATCAAACCACGA
126 AATTAAATCATGAGTCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
* ** * * * *
16478788 GTCAAAAAATCAAAACAATC-GAAATTAAATCATGAGTTAAAGAAA-AGAAAACGACTAGGATTA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAA-AAATA-AAAATGACTAAGATTA
* * * **** * * *
16478851 AATC-TTAGGTCA-ACAAATAAAAAT-GGCCGAAATTAAATCACAAGTCTAAAAA--AAAA-CAC
63 AACCATGA-GTCAGA-AAATGAAAATAATAAG-AATTAAACCACTAGTC-AAAAATGAAAATGA-
* * * *
16478910 CTAGAATTAAATCACGAGTCAAAAAATAAAAATGACAAGGATTAAATCATGA
123 C-AGAATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * * * * ** *
16478962 GTCAAAAAATGAAAA-GAATCAGAATAAAATCACGAGTCAAAGAATGAAAGCGA-TGAGAATTAA
1 GTCAAAAAATGAAAATG-ATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
* * ** * * * *
16479025 ACCATGAGTCAAAAAAAT-AAAATGATCGGGACTAAACTA-TAAGTCAAAAAATGAAAATGATCG
64 ACCATGAGTC-AGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CA
* * * * ** * * * **
16479088 GGATTAAA-CGGTAAGTTAAAAAATGAAAACAATTGGGATTGAACCATGA
125 GAATTAAATC-ATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * *
16479137 GT-AAGAGAATGAATATGAAT-TGGTTTAAATCATGAGTCAAGAAATTAAAATGA-TCATGATTA
1 GTCAA-AAAATGAAAATG-ATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTA
* * * * * * * *
16479199 AATCACGATTCAAAAAATG-AAATGACT--GGATTAAACCA-TGAGTCAGAAAATAAAAACGACT
63 AACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGAC-
* * ** * * **
16479260 AGGACTAAGCCATAAGTCAAAAAATAAAAAATGATCGAGATTAAACCACT-A
124 AGAATTAAATCATGAGTCAAAAAAT-GAAAATGA-CGAGATTAAATTA-TGA
* * * *
16479311 GTCAAAAAATGAAAATGA-CCGAGATTAAACCATGAGTCAAAAAATGAAAAA-GAATCAAGGTT-
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAAT-AAAAATGACT-AAGATTA
* * * * * * *
16479373 AA--TTGA-CCAGTAAAA-AAAAATGACT-GGGATTAAACCA-TGAGTCAAAAAATGAGAATGAT
63 AACCATGAGTCAG-AAAATGAAAAT-AATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-
** * * * ** * * **
16479432 CAGGGTTAAACCACGAGTCAGGAAAA-GAAAAACAATCAAAATTAAACCATGA
123 CAGAATTAAATCATGAGTCA-AAAAATG-AAAATGA-CGAGATTAAATTATGA
* * ** * * * *
16479484 GTGAGAAAAT--AAATGCGATCAAAATTAAACCATAAGTC-AAAAATGAAAATGACTCAAAATTA
1 GTCAAAAAATGAAAAT--GATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTA
** * * * * * * * * **
16479546 AATTACGAGTTAAAAAAT-AAAA-AATGATTGAGATTAAACGACGAGTTAGAAAATCAAAACAAT
63 AACCATGAGTCAGAAAATGAAAATAAT-A-AGA-ATTAAACCACTAGTCA-AAAATGAAAATGA-
* * * * *
16479609 CAAAATTAAATCATAAGTCAGAGAAAA-GAAACA--ATCGAAATTTAATCATG-
123 CAGAATTAAATCATGAGTCA-A-AAAATGAAA-ATGA-CGAGATTAAATTATGA
*** ** * *
16479659 GCTCAAAAAATGAAAGCAATTTGGATTAAA-CTATGAGTCACAAAATGAAAATGACTGAA-ATTA
1 G-TCAAAAAATGAAAATGATCAGGATTAAATC-ATGAGTCAAAAAATAAAAATGACT-AAGATTA
* * * * * * * * *
16479722 AATCATGAGTCAAAAAATGAAAATGACAGGGATTAAATCAC-AGGTAAGAAAATGAAAATGA-TG
63 AACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTA-GTCA-AAAATGAAAATGACAG
* * * * * * ** *
16479785 TAATTAAATCACGGGTTAGAGAATGAAAATAACCTGA-ATTAAACCACGA
126 -AATTAAATCATGAGTCAAAAAATGAAAATGA-C-GAGATTAAATTATGA
* * ** * * * * * * *
16479834 GTCAGAAAATAAAAACAATCGGGATTAAACCATGATTTAGAAAATGAAAATGACTATGATTAAAC
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
* * * ** ** ** * * ** *
16479899 CATAAGTTAGAAAATGAATACGACCAGGTTTAAATCACAAGTCAAGAAATGAAAATGATGGGGAT
66 CATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCAA-AAATGAAAATGA-CAGAAT
** * * * **
16479964 TAAATCACAAGTTAGAAAATGACAAATGATC-ATTATTAAACCATGA
129 TAAATCATGAGTCAAAAAATGA-AAATGA-CGA-GATTAAATTATGA
* ** * *** * * * * * *
16480010 GTCCAAAAATGAAAACAATCAGGATTAAACCCCCAATTAGAAAAAGAAAAATG-GTCAGGAATAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCA-AAAAATAAAAATGACT-AAGATTAA
* * * * *
16480074 ATCATGAGTTAGAAAATGAAAACAACTGAG-ATTAAACCACAAGTCAGAAAATGAAAATGACTAG
64 ACCATGAGTCAGAAAATGAAAATAA-TAAGAATTAAACCACTAGTCA-AAAATGAAAATGAC-AG
* * ** * * * * *
16480138 GATTAAACCACCAGTTAGAAAAA-GAAAAATAACCAGAATTAAACTGTGA
126 AATTAAATCATGAGTCA-AAAAATG-AAAATGACGAG-ATTAAATTATGA
* * ** * * * *
16480187 GTTAAAAAATGAGAACAATCGGGATTAAACCATGAGTC--AGAA-AAAAATGACCGAA-ATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAAA
* * * * * *
16480248 CTATGAGTCAGAAAATGAAAACAACCAA-AATTAAATCACGAAT--AAAA--AAAATGACCTA-A
65 CCATGAGTCAGAAAATGAAAATAA-TAAGAATTAAACCACTAGTCAAAAATGAAAATGA-C-AGA
* * * *
16480307 ATTAAACCATGAGTCAAAAAGTGAAAATGACTG-GTATGAAATCATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGAC-GAG-ATTAAATTATGA
* *** * * * * * * * * * *
16480354 TTTTGAAAATTAAAACGATC-GAGATAAAACCAAGAGTTAAAAAATGAATATGACT-GGTTTAAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* ** * * * * * * *
16480417 TCACAAGTCA-AGAAATGTAAACAATCCAG-ATTAAATCACAAGTCAAAAAATAAAAAATAAGCA
65 CCATGAGTCAGA-AAATGAAAATAAT-AAGAATTAAACCACTAGTC-AAAAAT-GAAAATGA-CA
* ** * * ** *
16480480 GGATTAAATCACAAGTTAGAAAAA--AAAATGACTAGAATTAAACCACGA
125 GAATTAAATCATGAGTCA-AAAAATGAAAATGACGAG-ATTAAATTATGA
* * ** * *
16480528 GTCAAAGAATGAAAATGAT-GGGAATTAAGCCATTAGTCAAAAAATAAAAATGA-TCAAAATTAA
1 GTCAAAAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * * * * *
16480591 ACTATGAGTCAAAAAATGAAAATGACTGA-AATTAAATCA-TGAGTCAGAAAAAGAAAATGACCT
64 ACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CA
* **
16480654 GAATTAAA-CTATGAGTCAAAAAATAAAAATGATC-AGGATTAAACCATGA
125 GAATTAAATC-ATGAGTCAAAAAATGAAAATGA-CGA-GATTAAATTATGA
* * * * * * * * * *
16480703 TTTAGAAAATAAAAATGATCGGGATTAAACCATGAGTCAGAAAATTAATATGAC-AAGGTTTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAA-GATTAAA
* * * * * * * ** *
16480767 TCACGAGTCA-AGAAATGAAAATGACT-GGGATTAAATCA-TAAGTTACAAAATGAACAGCGATT
65 CCATGAGTCAGA-AAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAA-AATGA-C
* * * * * **
16480829 GGGATTAAA-CAATGAGTTAGAAAATGAAAATGATCGGGATTAAACCACT-A
124 AGAATTAAATC-ATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTA-TGA
* * *
16480879 GTCAGAAAAA--AAAATGA-CTGGAATTAAACCATGAGTCAAAAAATGAAAATGA-TAGAGATTA
1 GTCA-AAAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGACTA-AGATTA
* * * * *
16480940 AATCACGAGTTC-G--AA--AAAATGACT-TGAATTAAACCA-TGAGTCAAAAAATGAAAACGAC
63 AACCATGAG-TCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGAC
* * * * * * * * **
16480998 TGGATTAAACCATGATTTAGAAAATAAAAATGATCGTGATTAAACCATGA
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * *
16481048 GTCAGAAAATGGATACGATC-GAGTTTAAATCATGAGTTAAGAAATGAAAATGA-TCAAGATTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* ** * *** * * * * **
16481111 ATCACAAGTCAGAAAATGAAAAGTGACCCGGATTAAACCACGAGTCAAAAAATAAAAAAGATTGG
64 ACCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGA-CAG
* * ** * ** ** **
16481176 GACTAAATCACAAGTTAGAAAAA-GAGAACCGATTAAGATTAAACCATGA
126 AATTAAATCATGAGTCA-AAAAATGA-AAATGA-CGAGATTAAATTATGA
* * * * * * ** *
16481225 GTGAGAAAAA-GAAAATGAAAATCATCGGGATAAAACCACGAGTTAAAAAATGAAAACCA-TCGA
1 GTCA-AAAAATGAAAATG---ATCA---GGATTAAATCATGAGTCAAAAAATAAAAATGACT-AA
* ** * * ** * *
16481288 GATTAAATCACAAGTCAAAAAATGAAAAATGACCAGGATTAAACCA-TGAGTCAAAAAATAAAAA
58 GATTAAACCATGAGTCAGAAAATG-AAAATAATAAGAATTAAACCACT-AGTC-AAAAAT-GAAA
* * * *
16481352 ATGACCAAAATTAAATCAT-ATGTCAAAGAAAAT-AAAATTACCAGGATT-AATTCATGG
119 ATGA-CAGAATTAAATCATGA-GTC-AA-AAAATGAAAATGACGA-GATTAAATT-ATGA
* ** ** * *
16481409 GT-AAGAAAATAAAAATGGCCAGGATTAAATCACAAGTCAAAAAATGAAAATGA-TCAAAATTAA
1 GTCAA-AAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* ** * * * * * *
16481472 ATCACAAGCCAGAAAATGAAAATGACAGGGATTAAATCA-TGAGTCAAAAAATGAAAATGA-ACG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGACA-G
** * * *
16481535 AAATTATGTCATGAGT-AAGAGAATGAAAATGACGAGAATTAAAATAAGA
126 -AATTAAATCATGAGTCAA-AAAATGAAAATGACGAG-ATTAAATTATGA
* * * * *
16481584 GTCAAAAAATGAAAACGA-CTGGCATTAAACTACA--AGTCAAAAAATGAAAACT-ACCATGATT
1 GTCAAAAAATGAAAATGATCAGG-ATTAAA-T-CATGAGTCAAAAAAT-AAAAATGACTAAGATT
* * ** *
16481645 AAATCATGAGTTAGAAAATGAAAATGACCAAG-ATTAAGCCA-TAAGTCAAAAACTGAAAATGAT
62 AAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCAAAAA-TGAAAATGA-
* * * * * *
16481708 CA-AGATTAAACCATGAGTCAGAAAATGAAAATGATCGGGATTAAAATGTAA
123 CAGA-ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * ** *
16481759 GTCAGAAAATGAATATGATCGGGTTTAAATCATAAGTCAAGAAATGAAAATGACTATTATTAAAT
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
** * ** * * * * *
16481824 CACAAGTTAGAAAATGAAAA-ACGACTGGATTAAACCA-TGAGTCAAAAAATGAAAATAACTGGG
66 CATGAGTCAGAAAATGAAAATAATA-AGAATTAAACCACT-AGTC-AAAAATGAAAATGAC-AGA
* * * * ** ** **
16481887 ATTAAACCATAAGTC-ATAAATAAAAACAACTG-GATTAAACCACAA
127 ATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * * * * * *
16481932 GTTAAAAAATGAAAAATGACCGGGATTAAAGCAAGAGTCAAAACATCAAAACGATCGAA-ATTAA
1 GTCAAAAAATG-AAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAA
* * * * * * * * **
16481996 ATCACGAGTTAGAGAAA-AAAAATTGACTGAG-ATTAAATCA-TGGATCAAAAAATGAAAACAAT
64 ACCATGAGTCAGA-AAATGAAAA-T-AATAAGAATTAAACCACTAG-TC-AAAAATGAAAATGA-
* * * * ** **
16482058 TAGAATTAAATAATGAGTCAAAAAATGAAAAAGATC-AGCATCAAACCACAA
123 CAGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAG-ATTAAATTATGA
* * * * *
16482109 GTCAAAAAATAAAAATGATCAAGATTAAATCACGAGTTAAAAAATGAAAAACT-ACCAAGATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAAT-AAAAA-TGACTAAGATTAA
* * * * * * *
16482173 A-CATGAGTCAAGGAAAA-AAAAACGACT-AGGATTAAATCA-TGGGTCAAAAAATAAAAATGAT
64 ACCATGAGTC-A-GAAAATGAAAA-TAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-
* * * ** * * * *
16482234 CATG-ATTAAACCACGAGTCAGAAAATGAAAACAACCAAAATTAAATCACGA
123 CA-GAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* ** * * * * *
16482285 GTCAAAAAATAAAAACAAT-AGGGATTAAATTACGAGTCAAAAATTGAAAAATGACT-GGAATAA
1 GTCAAAAAATGAAAATGATCA-GGATTAAATCATGAGTCAAAAAAT-AAAAATGACTAAG-ATTA
* ** * * * ** * *
16482348 AATCACAAGTCAGAGAATGAAAATGACAAGAATTAAACCAGGAGTCAAAAAATAAAAACGATC-G
63 AACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGA-CAG
* * * * * *
16482412 AGATTAAACCACGAGTCAAAAAATGAAAACGATCAAAATTAAATCATGA
126 A-ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * * * * ** * *
16482461 GTCAAAAAATGAAAA-CAACTAGGATT-AACCGTGAGTCAGATAATGAATACGATTGGGTTTATA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * * *
16482524 TCACGAGTCA-AGAAATGAAAATGAT-CGAGATTAAATCACGACTCAAAAAATGAAAATGACTAG
65 CCATGAGTCAGA-AAATGAAAATAATAAGA-ATTAAACCACTAGTC-AAAAATGAAAATGAC-AG
* * * * * * **
16482587 AATTAAACCACT-AATTAGAAAATGAAAACGACAAGGATTAAACCACT-A
126 AATTAAATCA-TGAGTCAAAAAATGAAAATGACGA-GATTAAATTA-TGA
* * * * * * * ** * **
16482635 GTCAAAAAATGAAAA-CAAC-GTAGATTAAACCATGAGTTAGAGAATGAAAACAATTGGGATTAA
1 GTCAAAAAATGAAAATGATCAG--GATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * ** **
16482698 ACCATGAGTTAGAAAAT-AAAA-AAT--G-ATTGAAACCACAAGTCAAAAAAAAAAACAAATCAG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATT-AAACCACTAGTCAAAAATGAAAA-TGA-CAG
* * ** * ** ** *
16482758 GATTAAACCACAAGTCAGAAAATGAAAATGAATAAGATTAAACCACGA
126 AATTAAATCATGAGTCAAAAAATGAAAATG-ACGAGATTAAATTATGA
* * * **
16482806 GTCAAAAAATGAAAATGACCCA-GATTAAACCATGAGTCAGAAAATAAAAATGACCGAGATTAAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
** * * * * * ** *
16482870 CCACCAGTCAAAAAAAGAAGAACAACTAAG-ATTAAACCACGAGTGAGAAAATGAAAACAACCAA
65 CCATGAGTCAGAAAATGAA-AATAA-TAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CAG
* * * * * * *
16482934 AATTAAACCTTGAGTCAGAAAATGAAAACGATTGAGATT-ACTCATTGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTA-TGA
* * * * * * * *
16482982 GTTCAAAAAA-GAGAAAAGCAT-AGAGATTCAACCACGAGTGAGAAAATAAAAA-GAATCAGGAT
1 G-TCAAAAAATGA-AAATG-ATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGAT
* * * *
16483044 TAAACCACGATTCTA-AAAATGAAAACAACTAAG-ATTAAACCA-TGAGTCAAAAAATTAAAATG
61 TAAACCATGAGTC-AGAAAATGAAAATAA-TAAGAATTAAACCACT-AGTC-AAAAATGAAAATG
* * * * * *
16483106 ACCA-AGATTAAATCGTGACTTAGAAAATGAAAAATGATCGGGATTAAATCATGGA
122 A-CAGA-ATTAAATCATGAGTCAAAAAATG-AAAATGA-CGAGATTAAATTAT-GA
* * * * * *
16483161 GTCAAAAAATG-AAA--A-C--GA-T--ACCATGAGTTAGAAAATGAATATGATCT-ATA-TAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAAA
* * * * ** * *** * * *
16483215 TCAAGAGTCATAAAATGAAAATGATTGGGATTAAATGTCAAGTCAGAAATGAAAAATGA-ATGGG
65 CCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCAAAAATG-AAAATGACA--GA
* ** * * * * *
16483279 ATTAAACCCCGAGTCAAAAAATGAAAACGACTAGGACTAAAGTAAGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * ** * * * *
16483326 GTCAAAAAATGAAAATGATCCGGATTAAACCACAATTCAGAAAATGAAAATGACT-CGAATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAAA
* * * * * * **
16483390 GCATGACTTAGAAAATAAAAATGACA-AAG-ATTAAACCA-TCAGTTAGAAAAAGAAAAACAACT
65 CCATGAGTCAGAAAATGAAAAT-A-ATAAGAATTAAACCACT-AGTCA-AAAATG-AAAATGAC-
* * * * * * ** *
16483452 AGGATTAAACCACGAGTCATAAAAT-AAAAGTGACCCAAATTAAACCACGA
124 AGAATTAAATCATGAGTCAAAAAATGAAAA-TGA-CGAGATTAAATTATGA
* * * * * * * * *
16483502 GTCAAAAAATGTAAACGA-CTAAGATAAAACCACGAGTCAGAAAAAGAAAAATTACTGAGATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCA-AAAAATAAAAATGACTAAGATTAA
* * * * *
16483566 ACTATG-GTGAGAAAAAGAAAATGACT--GTAATTAAACCA-TGAGTCAGAAAATAAAAATGACC
64 ACCATGAGTCAGAAAATGAAAAT-AATAAG-AATTAAACCACT-AGTCA-AAAATGAAAATGA-C
** * ** * ** *
16483627 A-AGATTAAATCACAAGTC-AAAAATGAAGACAACAATGATTAAACCACGA
124 AGA-ATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* ** * * * * * *
16483676 GCCAAAATGTAAAAAATAAT-AGGGATTAAACCATGAGTCAAAAACTCAAAATGATCGAA-ATTA
1 GTCAAAAAAT-GAAAATGATCA-GGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTA
* * * * * * * **
16483739 AATCATGAGTAAGAAAATGAAAACAACTGAG-ATTAAATCACTAGTCAAAAAAT-CAAACGATTG
63 AACCATGAGTCAGAAAATGAAAATAA-TAAGAATTAAACCACTAGTC-AAAAATGAAAATGACAG
* * * * * *
16483802 AAATTAAATAACGAGTCAGAAAATGAAAACAAGA-TAGATTAAATCATGA
126 -AATTAAATCATGAGTCAAAAAATG-AAA-ATGACGAGATTAAATTATGA
* * * * * * *
16483851 GTCAAAAAATGAAAATGATCATGATTAAACCATGAGCCAAAAATTGAAAATGA-TCAAAAGTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAAA
* * * ** * * **
16483915 TCATGAGTTAGAAAATGAAAACGACCAAG-ATTAAATCA-TGAGTTAGAAAATGAAAACAATCAG
65 CCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CAG
* * * * ** **
16483978 GATT-AACCATGAGTCAGAAAATGAAAACGATC-AGGATTAAAACACCA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGA-GATTAAATTATGA
* * * * * * *
16484025 G-CTAAAAAATGAATACGA-CTAGGTTTAAATCATGAGTCAAGAAATAAAAACGACCATGATTAA
1 GTC-AAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * * ** *
16484088 ATCACGAGTCAAAAAATGAAAAATGACCAAG-ATTAAACCA-TGAG-CTAGAAAATCAAAATGAC
64 ACCATGAGTCAGAAAATG-AAAAT-AATAAGAATTAAACCACT-AGTC-A-AAAATGAAAATGAC
* * * * ** *
16484150 TAGGATTAAA-CTATGAGTCAAAAAATGAAAATAACCAAAATTAAAACCACGA
124 -AGAATTAAATC-ATGAGTCAAAAAATGAAAATGA-CGAGATT-AAATTATGA
* * * * * * * **
16484202 GTCAGAAAATGAAATTGATC-GAGATTAAAACACGAGTTAAAAAAATGAAAATAAC-CGGTATTA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAG-TCAAAAAATAAAAATGACTAAG-ATTA
* * * * * *
16484265 AACCACGAGTCAAAAAATGAAAATGACT-GGGATTAAACTACTAGT-AAGGAAA--AAAATGATC
63 AACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCAA--AAATGAAAATGA-C
* ** * * * * ** *
16484326 A-AGATTAAAGCACAAGAT-AGAAAGTGAAACA--ATCAAAATTAAACCACCGA
124 AGA-ATTAAATCATGAG-TCAAAAAATGAAA-ATGA-CGAGATTAAATTA-TGA
* * ** * * * * *** *
16484376 -TTAGAAAATGAAAATGAAAATGATTAGGAT--T-A---AACACATGTCAA--A--AA-A-TGAA
1 GTCAAAAAATGAAAATGATCAGGATTA-AATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * *
16484428 CCATGAGTCAAAAAATAAAAATGAA-CAGGATTAAACCACCAATCAAAAA--AAAATGATCA-AG
65 CCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCAAAAATGAAAATGA-CAGA-
* * * * * **
16484489 ATTAAACCATGAGTGAGAAAATGAAAATGACCAGGACTAAACCATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * ** * * * * *
16484536 ATC-AGAAATGAAAACAACCTGGATTAAACCATGAGTC-AAAAATGAAAATGACTAGGATTAAAC
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
* * * * * * *
16484599 CTTGAGTTC-GAAAAAGAAAAAGTACA-AAG-ATTAAATCACAAGTGAGAAAATGAAAACGATCG
66 CATGAG-TCAGAAAATG-AAAA-TA-ATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CA
* * ** * ** **
16484661 GGATTAAACCATGAGTCAAAAAATGAAAACAATTGAGATTAAACCACAA
125 GAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * ** * **
16484710 GTCAAAAATTGAAAATGA-CTGAGATGAAATTGTGACTCAAAAAATGAAAAATGA-TCGGGATTA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAAT-AAAAATGACT-AAGATTA
* * * **** * * * * **
16484773 AACCACGAGTTAAAAAATGAAAATGGCCCA-TATTAAA-TAATGAGTCAGAGAATGAAAACAATC
63 AACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-C
* * * * ** * *
16484836 AGTATTAAATCACGGGTC-AGAAATGAAAGCGACCAGCATTAAACCTCA--A
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGACGAG-ATTAAA--TTATGA
** * * * ** * *
16484885 GTCAGCAAATGAAAAACGACCAGGATTAAACCACAAGTCAGAAAATAAAAATGA-TCGAGATTAA
1 GTCAAAAAATG-AAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * * *
16484949 ACTATGAGTTAGAAAATGAAAACAACCT-AG-ATTAAACCACGAGTCAAAAAATAAAAACT-ACC
64 ACCATGAGTCAGAAAATGAAAATAA--TAAGAATTAAACCACTAGTC-AAAAATGAAAA-TGA-C
* * * * * * * *
16485011 CGAATTAAACCATGAGTCAGAAAATAAAAATGACCAAGATTAAACTGTGT
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* ** * * * * *
16485061 GTCAGAAAACAAAAACGACCCA--ATTAAACCATTAGTCAAAAAATAAAAATGACTCAGATTAAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* ** * * * * * * *
16485124 CTATGAGTCA-AAAATGAAGACGACTCAG-GTTAAACCACTAATTAGAAAAAGAAAAACGACTA-
65 CCATGAGTCAGAAAATGAA-AATAATAAGAATTAAACCACTAGTCA-AAAATG-AAAATGAC-AG
* * * *
16485186 AGATTAAACCACGAGTCAAAAAATGAAAATGATCGAGATTAAACTATAA
126 A-ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * ** * * **
16485235 GTTAGAAAAA-GAAAAATGACCAAGATTAAACCACGAGTGAGGAAA-GAAAATGATTGGGATTAA
1 GTCA-AAAAATG-AAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * * * * * *
16485298 ACCACGAGTTAAAAAATGAAAATGAT-CGAGATTAAACCACAAGTCAAAAAATAAAAATGATCA-
64 ACCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACTAGTC-AAAAATGAAAATGA-CAG
* * * *
16485361 AGATTAAATAATGAGTCAAAAAATGAAAAATGATCAAGATTAAACTAAGA
126 A-ATTAAATCATGAGTCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
** * ** * * **
16485411 GT-AAAAACATCCAAATGACCAAAATTAAATCATGAGTCAGAGAA-AAAAAT-A-TCGGCATTAA
1 GTCAAAAA-ATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
* * * * * *
16485472 ATCACA-G-GTTA-AAAATTGAAAATGATCAGGATTAAACCACGAATCAAAAAATGAAAATGATC
64 A-C-CATGAGTCAGAAAA-TGAAAATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGA-C
* *** * * * * * *
16485534 AAAATTAAATCATGAGTCAGTTAATAAAAATAATAGGGATTAAATCATAA
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * * * *
16485584 GTTAGAAAATGAAAATGAT-TGAAATAAAATCATGAGTCAGAGAATGAAAATGACAAAAAATTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGAC-TAAGATTAA
* * ** * * * * *
16485648 ACCATGAGTCAAAAAATGAAAATGATCGGGATTAAACCACAAATCAAAAAATGAAAACGATCAAA
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGA-CAGA
* ** * ** *
16485713 ATTAAATCACGAGTCAAAAAATGAAAACAACTAAGATTAAACCATAA
127 ATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * ** * *
16485760 GACAGAAAATGAAAACCATC-GAGATTAAACCAT-AGGTCAAAAAATAAAAATGA-TCAAAATTA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGA-GTCAAAAAATAAAAATGACT-AAGATTA
* * ** * * ** * * *
16485822 AACCATAAGTTAGAAAATGAATACGACT-GGGTTTAAATCACTAGTCAAGAAGTGAAAATGACTG
63 AACCATGAGTCAGAAAATGAA-AATAATAAGAATTAAACCACTAGTCAA-AAATGAAAATGAC-A
*** * * * * **
16485886 GGGCTAAATCATGAGTCAGAAAATGAAAAATCATCGGGATTAAATGACAA
125 GAATTAAATCATGAGTCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
* ** * * *
16485936 GTAAAAAAATGAAAACAAT-AGGGATTAAA-CTAGGAGTTC--AAAATGAAAATGACTAGGATTA
1 GTCAAAAAATGAAAATGATCA-GGATTAAATC-ATGAG-TCAAAAAATAAAAATGACTAAGATTA
* * * * *
16485997 AACCATGAGTTAAAAAATGAAAATGACT-AGGATTAAACCA-TGAGTCAAAAAATGAAAATGACC
63 AACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGACA
* ** * ** ** **
16486060 CACATTAAA-CTAACAGCCAAAAAA--AAAATGATTAGGATTAAACCACAA
125 GA-ATTAAATC-ATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
** * * *
16486108 GTCAAAAAATGAAAACAAT-TGAAATTAAA-CTATGAGTCAAAAAATAAAAATGACTAGGATTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATC-ATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * * ** * *
16486171 ACCATGAGTCAAAAAAAGAAAACAACCCAG-A-TAAACCACCAGTCAAATAATGAAAATGACTAA
64 ACCATGAGTCAGAAAATGAAAATAA-TAAGAATTAAACCACTAGTCAAA-AATGAAAATGAC-AG
* * * * ***
16486234 AATTAAACCATAAGTCAGAAAATAAAAATGATC-AGAATTAAACCCTGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAG-ATTAAATTATGA
* * * * * * *
16486282 GTCAAAAAATGAAAAACGATCAAGATTGAACCATGAGTTAGAAAATAAAAATGACTAGGATTAAA
1 GTCAAAAAATG-AAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* ** * * * * * * *
16486347 TCACAAGTCAGAAAATGAAAACGACT-AGAATTACACCACGAGTTCGAAAATGAAAACGATTA-A
65 CCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACTAG-TCAAAAATGAAAATGA-CAGA
* * * *
16486410 GATTCAACCATGGGTCAAAAAATGAAAATGACTTGA-ATTAAATCATGA
127 -ATTAAATCATGAGTCAAAAAATGAAAATGAC--GAGATTAAATTATGA
* ** * * * * * * **
16486458 GTTAGGAAATGAGAACGACCAGGATTAAACCATGATTCAAAAAATGAAAACCACTGAA-ATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAAA
* * * * *
16486522 CCATGAGTCA-AAATATGAAAATGATTAGGATTAAACCA-TGAGTCACAAGATGAAAATGACCAA
65 CCATGAGTCAGAAA-ATGAAAATAATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CAG
* ** * **
16486585 AATTAAACCATGAGTCAAAAAATGAAAATGACCCTGATAAAACCATGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * * *
16486633 -TTAGAAAATGAAAATGA-CTAAGATTAAACCATGATTTAGAAAATGAAAACGAC-AAGGATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAA-GATTAA
* ** * *
16486695 ACCACT-AGTCAGAAAA-AAAAATGACGAAG-ATTAAACCACGAGTTAGAAAATGAAAATGATCA
64 ACCA-TGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CA
* * * **
16486757 -AGATTAAA-CAACGAGTTAGAAAATGAAAATGACTGAGATTAAACCATGA
125 GA-ATTAAATC-ATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * * * * * *
16486806 GTCAGAAAATGAATAGGATCAGGTTTAAATCATGAGTCAAGAAATGAAAA-CAATCCAGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAAA
* * * * ** * * * **
16486870 TCATGAGCCAAAAAATGAAAAATGATTGGGATTAAACTA-TGAGTCAGAAAATGAAAATTATTGG
65 CCATGAGTCAGAAAATG-AAAATAATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CAG
** * * * *
16486934 GCTTAAACCATGAGTC--AAAATTAAAATGATTTG-GATTAAA-CATGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA--CGAGATTAAATTATGA
* * * ** ** * **
16486979 GTCAAAAAATAAAAACGA-CTAGGATTTAGCCACCAGTC-ATAAA-AAAAATGA-TCGGGATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * * ** *
16487040 ACCATGTGTCAAAAAATGAAAATGATAAAAATTAAATGA-TGAGTCAAAAAATGAAAATGACCAA
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CAG
** * * * * * *
16487104 AATTAAATCACAATTTAGAAGATGAAAATGACCAAGATTAAACTATGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * *
16487152 GTCAGAAAATCAAAATGAT-AGG-TTAAACCACT-AGTCAAAAAATAAAAATGA-TCGAGATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCA-TGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * ** * * * *
16487213 ACCACT-AGTCAAAAAAAGAAAAATAACCAGGATTAAACCACGAGTTAGAAAATGAAAATGATAG
64 ACCA-TGAGTCAGAAAATG-AAAATAATAAGAATTAAACCACTAGTCA-AAAATGAAAATGACA-
* * ** * ** *
16487277 GGATTAAA-CGATGAGTCAAAAAAAGAAAAACAACCAGGATTAAACCAAGA
125 GAATTAAATC-ATGAGTCAAAAAATG-AAAATGACGA-GATTAAATTATGA
* * * ** * * *
16487327 GTCAGAAAATGAAAAT-AACTGAGATTAAA-CTACCAGTTAGAAAAAGAAAAATGA-TCGAGATT
1 GTCAAAAAATGAAAATGATCAG-GATTAAATC-ATGAGTCA-AAAAATAAAAATGACT-AAGATT
* * ** * *
16487389 AAACCATGAGTCAAAAAATGAGAATAA-CCGAGATTAAACCA-TGAGTTAGAAAAAGATAAATGA
62 AAACCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACT-AGTCA-AAAATGA-AAATGA
* * * * * * *
16487452 CTAGAATTAAACCATGAGTGAAAAAATAAAAATGATTGGGATTAAATCACGA
123 C-AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * *
16487504 GTTAGAAAATGAAAATGAT-TGGATTAAA-CTATGAGTTAGAAAATGAAAAATGACCAAGAGTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATC-ATGAGTCAAAAAAT-AAAAATGACTAAGATTAA
** * * * * *
16487567 ACCACAAGTCAAAAAAT-AAAA-AAGACTAGAATTAAATCA-TGAGTCAGAGAAAAGAAAACGAC
64 ACCATGAGTCAGAAAATGAAAATAATA--AGAATTAAACCACT-AGTCA-A-AAATGAAAATGAC
* * * * **
16487629 TGAAATTAAATTATGAGTCAGAAAATGAAAATGATCGGGATTAAACCATGA
124 AG-AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * *
16487680 GTCACAAAATGAAAATAAT-TGAAATTAAATCATGACTCAAAAAATAAACACA-G-C-AGGGATT
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAA-A-ATGACTA-AGATT
* ** * * *
16487741 AAATCATGAG-CTAGAAAATGAAAATAA-CCGAAATTAAATCA-TAAGTTAGATAATGAAAATGA
62 AAACCATGAGTC-AGAAAATGAAAATAATAAG-AATTAAACCACT-AGTCA-AAAATGAAAATGA
* ** * ** ** *
16487803 AAGGAATTAAGCCACGAGTCAAAAAATGAAAATGACTTGATTAAACCATAA
123 CA-GAATTAAATCATGAGTCAAAAAATGAAAATGACGAGATTAAATTATGA
* * * * * * * * *
16487854 GTCAAAAAATGAAAACGA-CTGGGATTAAACCTTGATTTAGAAAATGAAAATGAC-CAGAATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
* * * * ** ** ** * *
16487917 ATCACGAGTTAGAAAATGAATACGATTGGGTTTAAATCA-TGAGTCAATAAATGAAAACGACCAG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTCAA-AAATGAAAATGA-CAG
* * *** * ** **
16487981 GATTAAACCACCTGTCAAAGAAA-AAAAATGACTGAGATTAAACCACAA
126 AATTAAATCATGAGTCAAA-AAATGAAAATGAC-GAGATTAAATTATGA
* * * * ** * * *
16488029 CTTAGAAAATGAAAA-GAT-AGAGATTAAACCACAAGTCAGAAAAAAAAAAAAGCAACCCAA-AT
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCA-AAAAATAAAAATG--A-CTAAGAT
* * * * * * *
16488091 CAAACCATGAGTCAAAAAATAAAAATGACTATG-ATTAAACCACGAGTC-AAAA--AAAATGATG
61 TAAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCAAAAATGAAAATGA-C
* * * * * * ** **
16488152 GGAATTAAAGCACGAGTGAGAAAAA-GAAAAAGACTAAGATTAAACCACAA
124 AGAATTAAATCATGAGTCA-AAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * *
16488202 GTCAGAAAATGAAAATGATCAAGG-TTAAATCACT-AGTCAGAAAATTAAAATGACCAGGATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCA-TGAGTCAAAAAATAAAAATGACTAAGATTAA
* * * * ** * * * *
16488265 ACCATGACTCAGAAATTTAAAACAA-CCGATATTAAATCA-TGAGTCTAAGAAAAGAAAACGGAT
64 ACCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACT-AGTC-AA-AAATGAAAA-TGAC
* * * * **
16488328 GGGATTAAATCATGGGT-AACAAAATGAAAATGACCAGGATTAAACCATGA
124 AGAATTAAATCATGAGTCAA-AAAATGAAAATGACGA-GATTAAATTATGA
* ** * * * **
16488378 GTCAAAAAATGAAAATGACCAAAATTAAATCACGAGTTAAAAAATGAAAATGAACGGA-ATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATG-ACTAAGATTAAA
* * * * * ** *
16488442 TCATGAGTAAGAGAATGAAAATGATGAGAATTAAACCAAGAGTCAAAAAATAAAAATGATC-GAG
65 CCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGA-CAGA-
* * ** * * *
16488506 ATTAAACCATAAGTCAAAAAATGAAAACAACCATAATTAAATCATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* ** * * * * *** *
16488553 GTCAGAAAATGAAAACAATC-GAGATTAAACCATGAGTTAGAAAATGAAAGCAACTAGGATTAAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * ** * * * * * *
16488617 CCACT-AGTCAGAAAATAAAAATGATTGGGATTAAACCACGAGTTAAAAAATGAAAACGATCGGG
65 CCA-TGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAG-TCAAAAATGAAAATGA-CAGA
* * * * * * * *
16488681 ATTAAAACATTAGTTAGAAAATGAATACGATC-AGGTTTAAATCACT-A
127 ATTAAATCATGAGTCAAAAAATGAAAATGA-CGA-GATTAAATTA-TGA
* * * * ** * *
16488728 GTCAAAAAATGAAAATGA-CCGAGATTAAATTATGAATCAGAAAAGGTTTAAATCAC-GAG-TTA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCA-AAAA-ATAAAAATGACTAAGATTA
* * **** * * * * * *
16488790 AA--A--AAT-AAAAAATGACTGGGATTAA-AA-CAAA--AGTCA--AAAAATGA-AAACAATCA
63 AACCATGAGTCAGAAAATGA-AAATAATAAGAATTAAACCACT-AGTCAAAA--ATGAA-AATGA
* * * * * * * * **
16488843 -AG-ATTAAAGCACGAGTTAGAAAACGAAAACGACTAGGATTAAATCACAA
123 CAGAATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * * ** * *
16488892 GTTAGAAAATGAAAATGATC-GAGATTAAACCACCAGTCAAAAAATGAAAATGA-TCGAGATTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
** * * * * * * *
16488955 ACCACCAATGAGGAAAA-GAATAATGACTGAG-ATTAAAGCA-TGAGGCAGAAAATGAAAATAAT
64 ACCATGAGTCA-GAAAATGAA-AAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-
* * * * * * * * ** *
16489017 CAAAATTAAACCATGAATTAAAATATAAAAATGACTGTGATCAAACCA-CA
123 CAGAATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * **
16489067 TGTCAAAAAATAAAAATGAAT-GGGATTAAACCATGAGTCAAAAAATAAAAATAACTGGGATTAA
1 -GTCAAAAAATGAAAATG-ATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * * ** * * * *
16489131 ACAACT-AGTGAGAAAATGAAAATGACCAGGATTAAATC-GTAAGTAAGAAAATGAAAATGACCA
64 ACCA-TGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CA
* * * * * * ** *
16489194 GGATTAAATCGTAAGT-AAGAAAATGAAAATGACTCAAACTAAACCACGA
125 GAATTAAATCATGAGTCAA-AAAATGAAAATGAC-GAGATTAAATTATGA
*** * * * * * ** ** **
16489243 GTTGGAAAATGAAAATGACCAAGATTAAACCTTGATTTTGAAAAA-AAAAGGGACTTGGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGA-GTCAAAAAATAAAAATGACTAAGATTAAA
* ** * ** * * * *
16489307 TCACAAGTGAGAAAATGAAAACGAT-CGAGTTTAAACTACGAGTCAAAAAATGAAAATGATCA-A
65 CCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACTAGTC-AAAAATGAAAATGA-CAGA
* * * * * **
16489370 GATTAAACCATGAGTTAGAAAATAAAAATGATCGAAATTAAACCATGA
127 -ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * **
16489418 GTCAAAAAATGAAAACGATCGGGATTAAACCACGAGTCAGAAAATGAAAACGAC-CCGAATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAAA
* * * * * **
16489482 CCTTGAGTCAGCAAATGAAAAATGATCAA-AATTAAACCA-TGAATTAGAAAATGAAAACAACCA
65 CCATGAGTCAGAAAATG-AAAATAAT-AAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CA
* * * * ** * **
16489545 GGATTAAA-CTATAAGTCAGACAATGAAAACAATCTAGATTAAACCATGA
125 GAATTAAATC-ATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * ** * * * * * * *
16489594 GGCAAAAAATAAAAACCACTCA-AATTAAACCATGAGTCAGAAAGTGAAAACGAC-CAGATTAAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * **
16489657 CCACT-ATTCAGAAAAAGAAAAACAACT-AGGATTAAACCACGAGTCAAAAAATGAAAATGATTG
65 CCA-TGAGTCAGAAAATG-AAAATAA-TAAGAATTAAACCACTAGTC-AAAAATGAAAATGA-CA
* * * ** * * *
16489720 GGATTAAACCACT-ACTCTGAAAATGAAAATGACCTCA-ATT-AACTACTAA
125 GAATTAAATCA-TGAGTCAAAAAATGAAAATGA-C-GAGATTAAATTA-TGA
*** * * * * * *
16489769 GTCAAAAAATGAAAGCAACTCA-AATTAAACCA-CATGTCAGAAAATGAAAACGACTAAGATTAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGA-GTCAAAAAATAAAAATGACTAAGATTAA
* * * **
16489832 ACCATTAGTCAAAAAAAGAAAA-AGGACAGAGATTAAACCA-TAAGTCAGAAAATGAAAATGACC
64 ACCATGAGTCAGAAAATGAAAATAATA-AGA-ATTAAACCACT-AGTCA-AAAATGAAAATGA--
* * **
16489895 CCG-ATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACCATGA
123 CAGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * ** * *
16489945 GTC---AAA--AAAATGA-CTGGGATTAAACCATAAGGGAGAAAAA-GAAAATGACTAGGATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCA-AAAAATAAAAATGACTAAGATTAA
* * * * * * *
16490003 ACCATTAGTCAAAAAATGAAAATGAT-TGAGATTAAACTACAAGTCAAAAAATCAAAATGATC-G
64 ACCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACTAGTC-AAAAATGAAAATGA-CAG
* * * *
16490066 AGATTAAACCA-CATGTCAGAAAAT--AAA--A--A-ATTAAATCATGA
126 A-ATTAAATCATGA-GTCAAAAAATGAAAATGACGAGATTAAATTATGA
* * * * * ** *
16490107 GTCAGAGAAAA-GAAAA-CAACTGGGATTAAATCA-CAGGTCAAAAAATGAAAACAACTGAGATT
1 GTCA-A-AAAATGAAAATGATC-AGGATTAAATCATGA-GTCAAAAAATAAAAATGACTAAGATT
* * * * * * * * **
16490169 AAACCATAAGTCAAAAAATAAAAATGACTAA-AATTAAATCACGAGTTAGAAAATTAAAACAACA
62 AAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCA-AAAATGAAAATGAC-
* * * * * * * * **
16490233 AGGATTAAATCATAAGTTAGAAAATCAAAATGACCAGAATAAAGTCACAA
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGACGAGATTAAA-TTATGA
* * * * ** * * * * *
16490283 GTTAGAGACTG-AAA-GCAAAAGGAATTAAACCACGAGTCAAAAAATGAAAATGATTAGGATTAA
1 GTCAAAAAATGAAAATG-ATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
** * * * ** **
16490346 ACCACAAGTCAAAAAATAAAAATGACCAGAATTAAA--TTTGAGTCAGAAAATGAAAA-GACTAG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGAC-AG
* * ** ** * * ** *
16490408 GATCAACCCGCGAGTCAAAAAATAAAAATGACTAGGATTAAACCACGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * * * * ** * * **
16490456 GTTAGAAAATGAACACGA-CTAGGTTTAAATCACAAGTCAATAAGTGAGAACAAT--C-GGGATT
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAAT-A-AA-AATGACTAAGATT
* * * * * *
16490517 AGATCATGAGTCAGAAAATGAAAAATCACT-AGGATTAAACCAC-ATGTTAGAAAATAAAAATGA
62 AAACCATGAGTCAGAAAATG-AAAAT-AATAAGAATTAAACCACTA-GTCA-AAAATGAAAATGA
** * ** * **
16490580 TCAGGTTTAAA-CCTGGAGT-AAAAAA--AAAAAAACCTAGGATTAAACCATGA
123 -CAGAATTAAATCAT-GAGTCAAAAAATGAAAATGA-CGA-GATTAAATTATGA
* * * * ** *
16490630 GTCAAAAAATAAAAATGACCCA-GCTTAAACCATGAGTTGAAAAATAAAAATGACCAAGATTAAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * * * * * * **
16490694 TCACGAGTTAAAAAATGAAAATGACT-GGGATTAAACCACCAATCAAAAAAAGAAAAACCATCAG
65 CCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTC-AAAAATG-AAAATGA-CAG
* * * * ** * *
16490758 GATTAAACCAAGAGTAAAAAAATGAAAACAACTAAGATT-AATCCACT-A
126 AATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAAT-TA-TGA
* * * * * *
16490806 GTTAGAAAAA-GAAAAATGATCGGGATTAAACCATGAGTCAGAAAATGAAAATGACCCAA-ATTA
1 GTCA-AAAAATG-AAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTA
** * * * * * *
16490869 AATGATGAGTCAGAAAATGAAAATGAT-CGAAATTAAATCACGAGTTAAAAAATGAAAATGATCG
63 AACCATGAGTCAGAAAATGAAAATAATAAG-AATTAAACCACTAG-TCAAAAATGAAAATGA-CA
* * ** * * ** *
16490933 GGATTAAACCATGAGTCAGGAAATGAAAATGGCTG-TATTAAACCACGA
125 GAATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * ** * * * *
16490981 GTGAAAAAAAGAAAACAATCGAATC-GAAATTAAACCACCA-ACTAGAAAAAGAAAAATGACCAG
1 GTCAAAAAATG--AA-AAT-G-ATCAG-GATTAAATCATGAGTC-A-AAAAATAAAAATGACTAA
* * * * *
16491044 GATTAAATCACGAGTCAGAAAATGAAAATGACT-AGGATTAAACCACGAGT-AAGGAAATGAAAA
58 GATTAAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCAA--AAATGAAAA
** * * * **
16491107 CAACACAAATTAAACCATGAGTCAAAAAATGAAAA-GAACTGAGATTTAACCATGA
120 TGACA-GAATTAAATCATGAGTCAAAAAATGAAAATG-AC-GAGATTAAATTATGA
* * * * * * * * * *
16491162 GTTAGAAAATGAAAACGACCAGGATTAAACCATAAGTTAGAAAAT--GAAT-ACATCAAGTTTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGAC-T-AAGATTAA
* ** * ** * * * * * *
16491224 ATCACAAGTTA-AGAAATGAAAACGACATGGATTAAATCA-TAAGCCAGAAAATAAAAAATGACT
64 ACCATGAGTCAGA-AAATGAAAATAATAAGAATTAAACCACT-AGTCA-AAAAT-GAAAATGAC-
* * * * * **
16491287 AGGATTAAATAATGGGT-AAAAAATTGAAAACGATCGAGAATAAAGCATGA
124 AGAATTAAATCATGAGTCAAAAAA-TGAAAATGA-CGAGATTAAATTATGA
* * * * * * ** ***
16491337 GTCAAAAAATAAAAATGACCTA-AATTAAACCA-CATGTCAAAAAATGAAAACAACCCGGATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGA-GTCAAAAAATAAAAATGACTAAGATTAA
** ** ** * * *
16491400 ACCACAAG-CTAGAAAATCCAAACGATCAAG-ATTAGACCA-TGGTCAGAAAATCAAAATGATC-
64 ACCATGAGTC-AGAAAATGAAAATAAT-AAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CA
* * ** * * **
16491461 GAGATTAAACCACT-ATTCAAAAATAAAAAAATGACTAGGAGTAAACCATGA
125 GA-ATTAAATCA-TGAGTCAAAAA-ATGAAAATGACGA-GATTAAATTATGA
* ** * ** * *
16491512 GTCAAAAAATAAAAACAACCAAAATTAAACCATGAGTCAGAAAAATGAAAATGACTTAA-ATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCA-AAAAATAAAAATGAC-TAAGATTAA
* ** * ** * *
16491576 ATCACAAGTCAGAAAATGAAAATGACCAGGATTAAACCACTAGTTAGAAAATGAAAATGACCATG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CA-G
* * * ** * * ** *
16491641 -ATTAAACCATTAATCAGGAAATAAAAATGACTGGGATTAAACCATCA
126 AATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* ** * * * ** *
16491688 ATCAGAAAAA-GAAAAACA-AATGAGATTAGACCACAAGTCAAAAAATGAAAATGAC-AAGGATT
1 GTCA-AAAAATGAAAATGATCA-G-GATTAAATCATGAGTCAAAAAATAAAAATGACTAA-GATT
** * * * * * *
16491750 AAACCACCAGTTAGGAAATGAAAATGACT-TGGATTAAACCA-TGAGTCAAAAGATAAAAATGAT
62 AAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCAAAA-ATGAAAATGA-
* ** * * **
16491813 CAGGATTAAATCACAAGTCAAAAAAAGAAAAATGACCGGGATTAAACCATGA
123 CAGAATTAAATCATGAGTCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
* ** ** * * * ** *
16491865 GCTAAAAAAACAAAAACAATCAGGATTAAACCATAAGTGAGGAAATAAAAATGA-TCGAGATTAA
1 G-TCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * * *
16491929 ATCACGAGTCTGAAAATGAAAATGACT-AGAATGAAACCA-TAAGTCAAAAAATGAAAATGACCA
64 ACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CA
* ** ** * **
16491992 -AGATTAAACCATGAGTC-AAAAA--AATTTGTTGAAATTAAACCATGA
125 GA-ATTAAATCATGAGTCAAAAAATGAAAATGACGAGATTAAATTATGA
* ** * * * ** * *
16492037 GTTAGTAAATCAAAATGATCGGGATTAAACCACAAGTCAAAAAATGAAAATGATCGAA-ATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAAA
* * * * * * * ** *
16492101 CCACGAGTCAAAAAATTAAATTGATCAGGATTAAATTA-TGAGTCAAAAAATGAAAATGACCAGG
65 CCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CAGA
* * ** * *
16492165 ATTAAATCACGAGTCAGAAAATGAAAATGATAAAGATTAAATCACGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * *
16492212 GT-AAGAAAATGAAAATGA-CCGAAATTAAATCATGAGTCAGAGAATGAAAATGAC-AAGAATTA
1 GTCAA-AAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTA
* ** * * * * ** * * * * ** * *
16492274 AATCACAAATTAAAAAATGAAAA-GACCAGGATTAAGCCA-TGGTTAAAAAATGAAAACAAGTAA
63 AACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAG-TCAAAAATGAAAATGA-CAG
** * ** *
16492337 AATTAAATCACAAGTCAGAAAATGAAAATGATAAAGATTAAA--CTGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * *
16492383 GTTAGAAAATGAAAATGATTAGTGGTTTGAACAACCAGGATTAAACCATGAGTCCAAAAATTAAA
1 GTCAAAAAATGAAAATG---A------T-------CAGGATTAAATCATGAGTCAAAAAATAAAA
* * ** * *** * * ** *
16492448 ACGACTGAGATTAAACCACAAGTCAAAAAATGAATGCGACT-GGGTTTAAATCA-TGAGTCAAGA
50 ATGACTAAGATTAAACCATGAGTCAGAAAATGAA-AATAATAAGAATTAAACCACT-AGTCAA-A
* * ** * * * * *
16492511 AACT-AAAACGGCCA-AGATTAAATCACAAGTCAAAAAATGAAAAACGACTGGGATTAAACTGTA
112 AA-TGAAAA-TGACAGA-ATTAAATCATGAGTCAAAAAATG-AAAATGAC-GAGATTAAATTATG
16492574 A
172 A
* * * ** * * * * *
16492575 GTCAGAAAATAAAAATGACCTTGATTAAACCA-CAGGTCAGAAAATGAAAATGA-TCGAGATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGA-GTCAAAAAATAAAAATGACT-AAGATTAA
* * * * * *
16492638 ACCATGAGCCAAAAAATGAAAATGATCAGGATTAAACCACTAGT-ATGAAAAAGAAAA--ACAAC
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCA--AAAATGAAAATGAC-A-
* * * * * * * ** *
16492700 CAAGTTTAAATCACGAGTCAAAAGATGATAATAATAGAAATTAAAAGACGA
125 GAA--TTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * ** * * * *
16492751 GTCAAAAAGTGAAAATGACCAGGATTAAATCACCAATCAAAAAAATGAAAGTGAC-AGTGATT-A
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTC-AAAAAATAAAAATGACTA-AGATTAA
* * * * ** ** * * * * *
16492814 TCCTATAAGTTAAAAAATGAAAACGATTGGGATTAAACCACCAATCAAAAA--AAAATGACCGGG
64 ACC-ATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCAAAAATGAAAATGA-CAGA
* * **
16492877 ATT--A--AT--G---AAAAATG---AT--CAAGGTATAAACCATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGACGAGAT-TAAATTATGA
* * * * * *** ** * *
16492910 CTTAGAAAATGAAAATGAT-TGAGATTAAACCACCTGTCAGAAAAGGAAAAACT-ACCAAAATTA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCA-AAAAATAAAAA-TGACTAAGATTA
* * * *
16492973 AACCATGAGTCAGAAAATAAAAACT-ATTAGAATTAAACCACCAGT--AAAA--AAAATGATAGT
63 AACCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACTAGTCAAAAATGAAAATGACAG-
* * * * **
16493033 GATTAAA-C--GAGTTAGAAAATGAAAATGATCGAGA-TCAATTCACAA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATT-ATGA
* * * * * ** **
16493078 GTTAGAAAATAAAAATGATTCA-AATTAAACCAAAAGTCAAAAAATAAAAATGA-TCGGGATTAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * ** * * **
16493141 ACCACT-AATTAGAAAA-GAAAA-AATGAATCGGATTGTACCA-TGTGTCAAAAAATGGAAACAA
64 ACCA-TGAGTCAGAAAATGAAAATAAT-AA--GAATTAAACCACT-AGTC-AAAAATGAAAATGA
* * * ***
16493202 CCGAGATTAAA-CTAGGAGTCAAAAAATGAAAATGACCCCA-ATTAAGCCATGA
123 CAGA-ATTAAATC-ATGAGTCAAAAAATGAAAATGA--CGAGATTAAATTATGA
* ** * * *** *
16493254 GTCAAAAAATGAAAATGATCGGGATTAAATCACAAGTCAAAAAGTGAAAATGACCGGGATTAAAT
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
* ** * * * * * * * * *
16493319 CACGTCTCAAAAAATGAAAATGACT-AGAATTGAATCACGAGTTAGAAAATGAAAACGATAGGGA
66 CATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCA-AAAATGAAAATGACA-GAA
* ** **
16493383 TTAAATCCTGAGTCTGAAAATGAAAATGATCGAGATTAAACCATGA
128 TTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * *
16493429 GTCAAAAAAATGAAAACGACCAGGATTACATCATAAGTCAAAAAATGAAAATGATCT-GGATTAA
1 GTC-AAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAA
* * * **
16493493 ACCACT-AGTTAGAAAAAG-AAA-AATGACAGAGATTAAACCA-TGAGTTAGAAAATGAAAACAA
64 ACCA-TGAGTCAGAAAATGAAAATAAT-A-AGA-ATTAAACCACT-AGTCA-AAAATGAAAATGA
* * * * *
16493554 TCAGGATTAAAACATGAGTCAAAAAATGAAAAATAACTG-GATTAAAATCACGA
123 -CAGAATTAAATCATGAGTCAAAAAATG-AAAATGAC-GAGATT-AAATTATGA
* *
16493607 GTCAAAAAATGAAAATGATC-GAGATTAAATCATGAGTCAAAAAATAAAAACGATCT-AGATTTA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAA
* * * *
16493670 ACCATGAGTCAGAAAATGAAAATGACCT-A-CATTAAATCA-TGAGTCAGAAATTGAAAATGACT
64 ACCATGAGTCAGAAAATGAAAAT-A-ATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGAC-
* * * ** * ** *
16493732 AGGATTAAACCACGAGTCATAAAAA-GAAAAACAATC-AGGAATAAAACCACGA
124 AGAATTAAATCATGAGTCA-AAAAATG-AAAATGA-CGA-G-ATTAAATTATGA
* * * *
16493784 GTCAAAAAATGAAAATGATC-GGCATTAAACCATGAGTCAAAAAATCAAAATGACCTTA-ATCAA
1 GTCAAAAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAA
* * * * * * ** *
16493847 ACCACGAGTCAAAAAATGAAAACAACCT-AG-GTTAAACCA-TGAGTCAGAAAATTAGAACAACC
64 ACCATGAGTCAGAAAATGAAAATAA--TAAGAATTAAACCACT-AGTCA-AAAATGAAAATGACA
* * * * * **
16493909 CATATTAAACCATGAGCCAGAAAAA--AAAATGATTGGGATTAAACAATGA
125 GA-ATTAAATCATGAGTCA-AAAAATGAAAATGA-CGAGATTAAATTATGA
* * ** * *
16493958 -TCAGACAATGAAAAACAATC-GAGATTAAACCATGAGT-AAGAAAATGAAAATGACTAAGATTA
1 GTCAAAAAATG-AAAATGATCAG-GATTAAATCATGAGTCAA-AAAATAAAAATGACTAAGATTA
* * * * * * * *
16494020 AATCATGAATCAAAAAATGAAAATGACT-GGGATTAAATCA-TGAGTCAAAAAATGAAAAAGGAC
63 AACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTC-AAAAATG-AAAATGAC
** * * ** *
16494083 TA-AGATTAAATCACAAGTCAAAAAATGAAAAAGACCAGGATTAAACCACGA
124 -AGA-ATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * * * * * * *
16494134 GTCAGAAAATG-AAATGACTCA-AATTAAACCATGAGTCAGAGAATGAAAATGGCT-CGAATTAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
** * * * * * * * **
16494196 ACCACAAGTCAGAAAATAAAAATGACCT-AG-GTTAAATCTCGAGTCAAAAAATAAAAATGATTG
64 ACCATGAGTCAGAAAATGAAAAT-A-ATAAGAATTAAACCACTAGTC-AAAAATGAAAATGACAG
* * * * * ** *
16494259 CTATTAAACCATGAGTTAGAGAAA-GAAAAACGATC-AGAATTAAACCACGA
126 -AATTAAATCATGAGTCA-AAAAATG-AAAATGA-CGAG-ATTAAATTATGA
* * * * * *
16494309 GTCAAAAAATGAAAA-CAACTGGGATTAAACCATGAGTTAGAAAAA-GAAAATGA-TCAAGATTA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCA-AAAAATAAAAATGACT-AAGATTA
* ** * * * **
16494371 AACCATGAGTAAGAAAATGAAAA-AGA-CCGACCTTAAATCA-TGAGTTAGAAAGATGAAAACAA
63 AACCATGAGTCAGAAAATGAAAATA-ATAAGA-ATTAAACCACT-AGTCA-AAA-ATGAAAATGA
* * * ** * * * **
16494433 TCA-ATATTAAATTATAAGTCAGAAAATGAAAACAACTAAAATAAAACCATGA
123 -CAGA-ATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* ** * * *** *
16494485 GTCAAAAAATTAAAATGATCAGGATTAAATCACCAGTCAGAAAATGAAAGCAAC-AGGGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTA-AGATTAAA
* * * ** * * *
16494549 TCATGAGTTAGAAAATGAAAATGATCAA-AATTAATTCACAAGTCAGATAATGAAAATGATAGGA
65 CCATGAGTCAGAAAATGAAAATAAT-AAGAATTAAACCACTAGTCA-AAAATGAAAATGACA-GA
* ** ** *
16494613 ATTAAA-CTACGAGTCAAAAAATGAAAACAATC-AGTATTAAACCACGA
127 ATTAAATC-ATGAGTCAAAAAATGAAAATGA-CGAG-ATTAAATTATGA
* * *
16494660 GTCAAAAAATGAAAATGACCAAGATTAAATCATGAGTCAAAAAATGAAAAA-GA-TCAGAATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAAT-AAAAATGACTAAG-ATTAA
* * * * ** * * ** * *
16494723 GCCATAAGTCAAAAAATGAAAATGATTGGGATTAAATCACGGGTCAAAAAATCAAAATGACTAGG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTC-AAAAATGAAAATGAC-AGA
* * * *
16494788 ATTAAATCACGAGTCAAAAGATGAAAATGATC-AGCATAAAATCATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGA-CGAG-ATTAAATTATGA
* * * * * * * * *
16494835 ATCAAAAAATAAAAAT-AACAAGGATTAAATCAT-AGTTAGAGAATGAAAAT-AATGAGAATTAA
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
* * * ** * *
16494897 ACTATGAGTCA-AATAATGAAAATGACCT-AG-ATTAATCCAAGAGTCAAGCAA-GAAAAAAGAC
64 ACCATGAGTCAGAA-AATGAAAAT-A-ATAAGAATTAAACCACTAGTCAA-AAATG-AAAATGA-
* * * * **
16494958 CAAAATTAAATTATGAGTCAAAAAATGAAAACGATCGGGATTAAACCATGA
123 CAGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * *
16495009 GTCAGAAAATGAAAATGACCCA-AATTAAATCATGAGTCAAAAAATAAAAA-CAATCAGAATTAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
* * * * * * * * * *
16495072 ACC-TAGATTCAAAAAAT--TAATACTATCGAGTTTAAATCGCGAGT-AAGTAAATGAAAATGAA
64 ACCAT-GAGTCAGAAAATGAAAATAATA-AGA-ATTAAACCACTAGTCAA--AAATGAAAATGAC
* * ** * **
16495133 AGGGATTAAATCATAAGTCAAAAAATGAAAAACAATCGGGATTAAACCATGA
124 A-GAATTAAATCATGAGTCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
* * * ** * * * * *
16495185 GTTAAAAAATAAAAAATGATCAAGATTAAATCACAAGTCAGAAAATGAAAATAACCATA-ACTAA
1 GTCAAAAAAT-GAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTA-AGATTAA
* * * * *
16495249 ATCACGAGTCAGTGAAAA-GAAAATGACT-AGAATTAAACCACAAGTCAGAAAATAAAAATGACC
64 ACCATGAGTCA--GAAAATGAAAAT-AATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-C
* * * * ** * *
16495312 TAG-ATAAAAGCACGAGTCAGAAAATGAAAACCATTG-GAATTAAATTACGA
124 -AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAG-ATTAAATTATGA
* ** * *
16495362 GTCAAAAAATGAAAATAAAAAGGATTAAATCAT-AGGTCAAAAAATGAAAATGA-TGAAAATTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGA-GTCAAAAAATAAAAATGACT-AAGATTAA
* * * * * * ** *
16495425 ACCATGAGTCAAAAAATTAAAATGATCATAATTAAATCA-TAAGTCAGAAAATGAAAACAACTAA
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGAC-AG
** * * *
16495489 AATTAAATCACAAGTCAGAGACAAA--ACAACGATCGAGATTAAATCATGA
126 AATTAAATCATGAGTCA-A-A-AAATGAAAATGA-CGAGATTAAATTATGA
* * * * *
16495538 GTCAAAAAATAAAAATGATC-GAGATTAAACCATGAGTCAAAAAATGAAAATCATCGAA-ATTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAA
* ** * * ** * * * *
16495601 ATCACAATTTA-AAAA--AAAACGATAGGGATTAAATCA-TGAGTCAAAAAATGAAAATGACTGA
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGACAG-
* * * * * * ** **
16495662 AATTAAATCACGAGCCAGAAAATGAAAACGATTGAAATTAAAACACAA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * ** * * * ** * ** *
16495710 GTCATAAAATGAATACAACCAAGTTTAAATCATGAGTCAGGAAATGAAAATGACCGAGATTAAAT
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
* * * * * * * * * *
16495775 TATGAGTCAAAAAATGAAAAATGATCAGGATTAAACCACGAGTTAAAAAATTAAAAGGACCGAGA
66 CATGAGTCAGAAAATG-AAAATAATAAGAATTAAACCACTAG-TCAAAAATGAAAATGACAGA-A
* * * * * * * **
16495840 TTAAACCGTGGGTCAGAAAATGAAAACGATCAAAATTAAACAATGA
128 TTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * * *
16495886 GCCAGAAAATGAAAATGA-CCGAAATTAAATCACGAGTCAAAAAATGAAAATGACCAGGAATAAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * **
16495950 CTACGAGTCTA-AAAATGAAAATGATCAA-AATTAAATCACGAGTCAGAAAATGAAAACAACTAG
65 CCATGAGTC-AGAAAATGAAAATAAT-AAGAATTAAACCACTAGTCA-AAAATGAAAATGAC-AG
* ** * ** *
16496013 AATTAAACCA-GTAGTTGGAAAAA-GAAAAATGATCGGGATTAAACCATAA
126 AATTAAATCATG-AG-TCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
* * * * * * *
16496062 GTCAAAAAATGAAAACGACTCA-AATTTAACCATGAGTTAAAAAAATGAAAATGACCT-GGATTA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAG-TCAAAAAATAAAAATGA-CTAAGATTA
* ** * * * * * * *
16496125 AAACACAAATTAGAAAAAGAAAAATGAT-TGAGATTAAACCA-TGAATTAGAAAATGAAAATGAC
63 AACCATGAGTCAGAAAATG-AAAATAATAAGA-ATTAAACCACT-AGTCA-AAAATGAAAATGAC
* * * * * **
16496188 TAGAATTAAACCATGAGTTAGAAAATGAAAATGATTG-GCGTTAAACCATGA
124 -AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAG-ATTAAATTATGA
* * * * * * * ** *
16496239 GTCAGAAAATAAAAACGATCAAGATTAAATCACGAGTTAAAAAATAAAAATGGCTTGGATTAAAT
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
* * ** * * * * * *
16496304 CATAAGTC---AAATAAAAATAACCAGGATTAAACCA-TGAGTCAAAAAATTAATACGATCGGAT
66 CATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CAGAA
* * * * *
16496365 TTAAATCACGAGTAAAAAAATAAAAATGA-AAGGTATTAAATCACT-A
128 TTAAATCATGAGTCAAAAAATGAAAATGACGA-G-ATTAAATTA-TGA
* * * * * * *
16496411 GTCAAAAAATAAAAAATGATC-GAGATTAAACCATAAGTCAGAAAATGAAAATGACCAGGATTAA
1 GTCAAAAAAT-GAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAA
* * * ** *
16496475 ACTATGAGT----AAA--AAAAT-ATCAGGATTAAACCAAAAGTCAAAAAAATGAAAATAACCAG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTC--AAAAATGAAAATGA-CAG
* *
16496533 AATTAAATCATGAGTTAGAGAAAA-GAAAATGACTG-GAATTAAACTATGA
126 AATTAAATCATGAGTCA-A-AAAATGAAAATGAC-GAG-ATTAAATTATGA
* * ** * * * * * * *
16496582 GTCAAAAAAATAAAAATGGTTGGGATAAAACCATGAGTTAGAAAATGAAAATCAC-CAGAATTAA
1 GTC-AAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAG-ATTAA
** * * * * * *
16496646 TTCACGAGTCA-AAAATGAAAACAATAAGGATTAAATCACAAGTCAGAAAATGAAAATGACTGGA
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCA-AAAATGAAAATGAC-AGA
** * * **
16496710 ATTAAATCCCGAGTCAAAAAATTAAAATGACAAGAATTAAAGCATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGACGAG-ATTAAATTATGA
* * * * * * *
16496757 GTTAAAAAATGAAAAT-A-CTGAGATTTAACCATGTGTCAAAAAATGAAAATGTCGT-A-ATTAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGAC-TAAGATTAA
* * * *
16496818 ATCATGAGTCA-AGAAATTAAAATGATCAAG-ATTAAACCACGT-GTCAAAAAATAAAAATGATC
64 ACCATGAGTCAGA-AAATGAAAATAAT-AAGAATTAAACCAC-TAGTC-AAAAATGAAAATGA-C
* ** * * * * *
16496880 AAAATTAAATCACAAATTAAAGAAA--AATATGATCGAGATTAAATCA-CA
124 AGAATTAAATCATGAGTCAAA-AAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * *
16496928 GGTCAAAAAATGAAAAGGATCGGGATTAAACCATGAGTTAGAAAA-GAAAATGA-TCAAAAGTAA
1 -GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * * * * *
16496991 ATCACGATTC--AAAA--AAAATGAT-AGAGATTAAATCA-TGAGTTAGAAAATGAAAATGATAG
64 ACCATGAGTCAGAAAATGAAAATAATAAGA-ATTAAACCACT-AGTCA-AAAATGAAAATGACA-
* * ** * * ** **
16497050 GGATTAAATCGTGAGTCTGAAAATGAAAATGACCAGGATTACACCACAA
125 GAATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * * * * ** * * *
16497099 GTTAGAAAATGAAAACGATCCA-AATTAAACCACCAGTTAGAAAAAGAAAAATGACTAGGATTAA
1 GTCAAAAAATGAAAATGAT-CAGGATTAAATCATGAGTCA-AAAAATAAAAATGACTAAGATTAA
* ** * * * * * * ** *
16497163 ATCGCGAGTTAGGAAATGAAAATGACT-TGGATTAAACCA-TGAGTCAGAACATGAAAACAACCG
64 ACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGACAG
* * * * ** *
16497226 CGATTAAACCATGAATCAGAAAATGAAAATGATC-AGGATTAAACCATAA
126 -AATTAAATCATGAGTCAAAAAATGAAAATGA-CGA-GATTAAATTATGA
* * * * * *
16497275 GTCAAAAAATGAAAAAT-AGCTGGGATTAAAACCACGAGTCAAAAAATGAAAATGA-TCGAGATT
1 GTCAAAAAATG-AAAATGATC-AGGATT-AAATCATGAGTCAAAAAATAAAAATGACT-AAGATT
* * * * * *
16497338 AAACCGTGAGTCA-AAAATGAAAACGACCT-A-CATTTAACCACAAGTCAAAAAATGAAAATGAC
62 AAACCATGAGTCAGAAAATGAAAA-TA-ATAAGAATTAAACCACTAGTC-AAAAATGAAAATGAC
* * * * * * **
16497400 TTGCATTAAATCATGAGTCAGAAATTGAAGATGACTAGGATTAAACCACT-A
124 -AGAATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTA-TGA
** * * * * * * * * **
16497451 --C-CCAAA--AAAA--ATC-GAGATTAAACCACGTGTTAAGAAATGAAAACGATTGGGATTAAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * * * ** * * ** * *
16497508 CCACGAGCCAAAAAATCAAAATGA-CCGTAATCAAACCACGAGTCAGAAAATGAAAACAACCTGG
65 CCATGAGTCAGAAAATGAAAATAATAAG-AATTAAACCACTAGTCA-AAAATGAAAATGA-CAGA
* * * * * * * **
16497572 GTTAAACCAAGAGTCAGAAAATTAGAACGACCCGA-ATTAAACCATGA
127 ATTAAATCATGAGTCAAAAAATGAAAATGA--CGAGATTAAATTATGA
* * * ** *
16497619 GCCAGAAAA--AAAATGA-CTAGGATTAAA-CAACGAGTCCGACAATGAAAAATGA-TCAAGATT
1 GTCAAAAAATGAAAATGATC-AGGATTAAATC-ATGAGTCAAAAAAT-AAAAATGACT-AAGATT
* * * * * * *
16497679 AAACCATGAGTTAGAAAATAAAAATGACTGAG-ATTAAATCACGAGTCAAAAAATGAAAAGGATC
62 AAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTC-AAAAATGAAAATGA-C
* * * * * ** * ** *
16497743 GGGATTAAACCACGAGTTAGGAAATG-AAATGACTGGGATTAAACCACGA
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * ** * * ** *
16497792 GTCAAAGAATGAAAATGACTCA-AATTAAACCACAAGTCAAAAAATGAAAATGATTTGGGTTAAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* ** ** * * * **
16497856 TCACAAGTCAGAAAATGAAAACGATCAAG-ATTAAACTACGAGTTAGAGAAA-GAAAAACAATCA
65 CCATGAGTCAGAAAATGAAAATAAT-AAGAATTAAACCACTAGTCA-A-AAATG-AAAATGA-CA
* * * * * *
16497919 GGATTAAACCACGAGTTAAAAAATGAAAATGACCAGGATTAAACCT-TGA
125 GAATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAA-TTATGA
* * *
16497968 GTCAGAAAAA-GAAAACGATCAGAATTAAACCATGAGT-AAGAAAATGAAAAA-GACT-AGCATT
1 GTCA-AAAAATGAAAATGATCAGGATTAAATCATGAGTCAA-AAAAT-AAAAATGACTAAG-ATT
* * * * * ** * * *
16498029 AAATCATGAGTTAGAGAGATTAAAACAA-CCGAGATTAAATCA-TGAGTCAAAAAATGAAGACGA
62 AAACCATGAGTCAGA-AAATGAAAATAATAAGA-ATTAAACCACT-AGTC-AAAAATGAAAATGA
** * * * * * * * *
16498092 TTGAGATAAAACCATGAGTTAGAAAATGAAAACGGTCGGGATTAAATCATGA
123 CAGA-ATTAAATCATGAGTCAAAAAATGAAAA-TGACGAGATTAAATTATGA
* * * ** ** * * ** * *
16498144 ATTAGAAAATGAAAGCGAT-AGGGATTAAATCACAAGTTAGAATGTGAAAAAAGATTGAA-ATTA
1 GTCAAAAAATGAAAATGATCA-GGATTAAATCATGAGTCAAAAAAT-AAAAATGACT-AAGATTA
** * * * * * * *
16498207 ATTCATGATTCAGAGAATGAAAATGACATGAATTAAACTA-TGAGTCAAAAAATGAAAACGATCA
63 AACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CA
* * * * * *
16498271 GGATTAAACCACGAGTCATAAAAATGAAAATGACCATGATTAAATCAAGA
125 GAATTAAATCATGAGTCA-AAAAATGAAAATGACGA-GATTAAATTATGA
* * * * * *** *
16498321 GTCAGAAAATGAAAAAGATCGGGATTAAACCATAAGTTGGAAAATGAAAATGA-TCAAGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAAA
* * * * * * *
16498385 TCATGAGTCAAAAAATGAAAATGATCAG-ATTAAATCA-TGACTCGAAAGATGAAAATGATC-GA
65 CCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CAGA
* * * * * * *
16498447 CATAAAATCATAAATCAAAAAATAAAAATGGCAGGGATTAAATTATAA
127 -ATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * * * * * * ** *
16498495 GTCACAGAATGAAAA-CAACGAGAATTAAACCATAAGTCAGAAAATGAAAATGACCGAGATTAAT
1 GTCAAAAAATGAAAATGATC-AGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * ** ** *
16498559 CCAAGAGTCA-ATAAAGGAAAATGACCAA-AATTAATTCA-TGAGTCAAAAAATAAAAATGATC-
65 CCATGAGTCAGA-AAATGAAAAT-AATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CA
* *
16498620 GAGATTAAACCTCA--AGTCAAAAAATGAAAATGACTGAGATT-AATCCAAGA
125 GA-ATTAAA--TCATGAGTCAAAAAATGAAAATGAC-GAGATTAAAT-TATGA
* * * ** *
16498670 GTCAAGAAAGGAAAATGACCAAAATTAAATCATGAGTCAAAAAATAAAAATGATCGAA-ATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAAA
* *** * ** *
16498734 CCATGAGTTAGAAAATGAAAATGACCCA-AATTAAATCA-TGAGTCAGAAAATGAAAACAATCAA
65 CCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-CAG
* * * * * * * ** * * *
16498797 AATTAAACCAAGATTTAGAAAATTAATACCATCGGGTTTAAATCATGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * * * **
16498845 GTGAGAAAATGGAAACGA-AAGGGATTAAATCATGAATCAAAAAATGAAAAACGA-TCGGAATTA
1 GTCAAAAAATGAAAATGATCA-GGATTAAATCATGAGTCAAAAAAT-AAAAATGACTAAG-ATTA
* * * * * *
16498908 AACCACGAGTCAAAAAAT-AAAA-AATGATCGAGATTAAATCA-TGAGTTAGAAAGTGAAAATGA
63 AACCATGAGTCAGAAAATGAAAATAAT-A-AGA-ATTAAACCACT-AGTCA-AAAATGAAAATGA
* * * * * **
16498970 CCAAAACTAAATCATGAGTCAAAGAAAGGAAAATGACTAAAATTAAACCATGA
123 -CAGAATTAAATCATGAGTCAAA-AAATGAAAATGAC-GAGATTAAATTATGA
** * *
16499023 GTCAAAAAATGAAAACCA-CTGGAATTAAATCATGAGTC-AAAAATGAAAATGA--AAGGGATTA
1 GTCAAAAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGACTAA--GATTA
** * * * * * * *
16499084 AATTATGTGTCAGAAAATGAAAATGACT-GGAATTAAAGCACGAGCCAGAGAATGAAAACAATGA
63 AACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCA-AAAATG--AA-AATGA
* * ** *
16499148 -A-AATTAAACCATGAGTCAAAAAATGAAAATGACTGGGATTAAACCACGA
123 CAGAATTAAATCATGAGTCAAAAAATGAAAATGAC-GAGATTAAATTATGA
* * * * * ** * *
16499197 GTTAAAAAATTAAAATGATC-GTAATTAAATCATAAGTCAAAAAATGAAAACAACCAAAATTAAA
1 GTCAAAAAATGAAAATGATCAG-GATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* ** * * * *
16499261 TCACAAGTCAGAGGAAA-GAAAATGATTAAG-ATTAAATCA-TGAGTCAGAAAATAAAAATGATG
65 CCATGAGTCAGA--AAATGAAAAT-AATAAGAATTAAACCACT-AGTCA-AAAATGAAAATGA-C
* * * * * * **
16499323 GGGATTAAACCATGAGTCAAAAAATGAAAACGATCGAAATTAAATCACAA
124 AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * **
16499373 TTCAAAAAA--AAAATGATAAGGATTAAATC-CGAGTCAAAAAATGAAAACGA-TTGGATTTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGA-TTAAA
* * * * * * ** **
16499434 TCATGAGTCTA-AGAATTAAAATGATAGGCATTAAACCA-TGAGTCAAAAAATGAAAACAAGTGG
65 CCATGAGTC-AGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGA-CAG
* * * * * ** **
16499497 GATTAAACCACGAGGT-AGAAAATGAAAATGATTG-GAATTAAAACACAA
126 AATTAAATCATGA-GTCAAAAAATGAAAATGA-CGAG-ATTAAATTATGA
* * ** * * * * * ** * *
16499545 GTCATAAAATGAATACAACCAAGTTTAAGTCACGAGTCAGGAAATGAAAATGA-TCGAGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAAA
** * * * * * * * * *
16499609 TTATGAGTTAAAAAATGAAAAATGATTAGGATTAAACCACGAGTTAGAAAATGAAAAGGACCAGG
65 CCATGAGTCAGAAAATG-AAAATAATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CAGA
* * **
16499674 ATTAAACCATGGGTCAAAAAATAAGAACAATTGA--A-ATTAAAAGATGA
127 ATTAAATCATGAGTCAAAAAAT--GAA-AA-TGACGAGATTAAATTATGA
* * ** * * *
16499721 GCCAGAAAATGAAAATGATCAAAATTAAATCATGAGTTAAAAAATGAAAATGA-TCAGGATTAAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAAA
**** * *
16499785 TTGCGAGTCTA-AAAATGAAAACAAT-TGAGATTAAACCA-TGAGTCAAAAAATGAAAATGACTA
65 CCATGAGTC-AGAAAATGAAAATAATAAGA-ATTAAACCACT-AGTC-AAAAATGAAAATGAC-A
* ** * * * ** *
16499847 GAATTAAACCACCAGTTGAAAAAA-GAAAAATGATTGGGATTAAACCATAA
125 GAATTAAATCATGAG-TCAAAAAATG-AAAATGA-CGAGATTAAATTATGA
* * * * * * *
16499897 GTCAGAAAATGAAAACGACCCA-GATTTAACCATGAGTC-AAAAATGAAAATGACCT-GGATTAA
1 GTCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAA
** * * * * * * **
16499959 ACCAAAAGTTAGAAAAAGAAAA-ACGACCAAG-ATTAAACCACAAGTTAGAAAAAGAAAAACAAC
64 ACCATGAGTCAGAAAATGAAAATA--A-TAAGAATTAAACCACTAGTCA-AAAATG-AAAATGAC
* * * * * * * * * *** *
16500022 TAGGATTAAACCTTCAATTAGAAAATGAAAATGATTGGGATTAAGCCACGA
124 -AGAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * ** *
16500073 GTTAGAAAATGAAAATGA-CTGGCATTAAACCATGAGTCAGAAAATGGAAATGACCAAGATTAAA
1 GTCAAAAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAA
* * * *** ** * * **
16500137 TCATGAGTTAGAAAATGAAAACGACCCAG-ATTAAATTACAAGTCAGAAAATAAAAACAATC-GA
65 CCATGAGTCAGAAAATGAAAA-TAATAAGAATTAAACCACTAGTCA-AAAATGAAAATGA-CAGA
* * * * * * * * **
16500200 GATTAAACCATGACTCAAAAAATTAATACGACCAGGTTTAAATCACAA
127 -ATTAAATCATGAGTCAAAAAATGAAAATGACGA-GATTAAATTATGA
* * * **
16500248 GTCAAAAAATAAAAATGA-AAGGTAATAAATCATGAGTCAAAAAATAAAAAATGACCGAGATTAA
1 GTCAAAAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAAT-AAAAATGACTAAGATTAA
* * * * * **
16500312 ACCATGAGTCAGAAAATGAAAATGATTAGGATTAAACTA-TAAGTTAAAAAATGAAAAACAACAG
64 ACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AG-TCAAAAATG-AAAATGACA-
* ** * * * * *
16500376 GGATTAAAAT-AAAAGTCAGAAAATGAAAACGACCAAAATTAAATCATGA
125 GAATT-AAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * *
16500425 GTTAGAGAAAA-GAAAAAGAT-TGGAATTAAACCATGAGTCAAAAAATAAAAATG-GT-CGAGTT
1 GTCA-A-AAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGACTAAGA-TT
* * *** * *
16500486 AAAACCATGAGTTAGAAAATGAAAATCACCGGAATTAAATCA-TGAGTCAAAAAATGAAAATAAC
62 -AAACCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTC-AAAAATGAAAATGAC
* * ** *
16500550 AAGGATTAAATCACGAGTCAAAAAATGAAAACAACTG-GAATTAAATCATGA
124 -AGAATTAAATCATGAGTCAAAAAATGAAAATGAC-GAG-ATTAAATTATGA
* * * * * * * *
16500601 GTCAGAAAATAAAAACGATGAGAATTAAAGCATGAGTCAAAAAATGAAAATGACCT-AGATTTAA
1 GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGA-CTAAGATTAAA
* * * * * **
16500665 CCATGAGTCAAAAAATGAAAAT-GTCATAATTAAATCA-TGAGTCAGAAAATG-AAATCGATTGA
65 CCATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACT-AGTCA-AAAATGAAAAT-GACAGA
* * * * * *
16500727 GATTAAACCA-CATGTCAAAAAATGAAAATGACCAAAATTAAATCATAA
127 -ATTAAATCATGA-GTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * * **
16500775 GTCAGAGAAAA--AAAATGA-CCGAGATTAAATCA-CATGTCAAAAAATGAAAAGGATTGGGATT
1 GTCA-A-AAAATGAAAATGATCAG-GATTAAATCATGA-GTCAAAAAATAAAAATGACTAAGATT
** * * * * * ** *
16500836 AAACCACAAGTTAGAAAATGAAAATGAATGA-AATTAAATCACGATTCAAAAAAAAAAATGATAG
62 AAACCATGAGTCAGAAAATGAAAAT-AATAAGAATTAAACCACTAGTCAAAAATGAAAATGACA-
* * * * * * * * *
16500900 GGATTAAATCATGAGTTAAAAAAAGAGAATAACCAAAATTAAATCATGT
125 GAATTAAATCATGAGTCAAAAAATGAAAATGA-CGAGATTAAATTATGA
* * * * ** * *
16500949 GTCAGAGAATGAAAATGA-CGGGCATTAAACCACAAGTCAAAAATTAAAAATGA-TCGAGATTAA
1 GTCAAAAAATGAAAATGATCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGACT-AAGATTAA
* * * * * * ** * *
16501012 ACCATGATTTAGAAAAAGAAAA-AGACAGGGATTAAATTACGAGTCAAAAAATAAAAATGACTAG
64 ACCATGAGTCAGAAAATGAAAATA-ATAAGAATTAAACCACTAGTC-AAAAATGAAAATGAC-AG
* * * * * ** ** *
16501076 AATTAAGTCATGAGTTAGAGAATTAAAATGATAAGCATTAAAGCACGA
126 AATTAAATCATGAGTCAAAAAATGAAAATGACGAG-ATTAAATTATGA
16501124 GTCAAAAAATGAAAA
1 GTCAAAAAATGAAAA
16501139 GGACTGGGAT
Statistics
Matches: 21181, Mismatches: 5209, Indels: 3832
0.70 0.17 0.13
Matches are distributed among these distances:
156 1 0.00
157 15 0.00
158 4 0.00
159 82 0.00
160 60 0.00
161 51 0.00
162 38 0.00
163 53 0.00
164 88 0.00
165 27 0.00
166 38 0.00
167 203 0.01
168 299 0.01
169 219 0.01
170 398 0.02
171 632 0.03
172 670 0.03
173 1601 0.08
174 3424 0.16
175 4797 0.23
176 4810 0.23
177 2346 0.11
178 672 0.03
179 77 0.00
180 101 0.00
181 26 0.00
182 5 0.00
183 90 0.00
184 87 0.00
185 9 0.00
186 4 0.00
187 49 0.00
188 45 0.00
189 110 0.01
190 29 0.00
191 4 0.00
192 17 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (172 bp):
GTCAAAAAATGAAAATGATCAGGATTAAATCATGAGTCAAAAAATAAAAATGACTAAGATTAAAC
CATGAGTCAGAAAATGAAAATAATAAGAATTAAACCACTAGTCAAAAATGAAAATGACAGAATTA
AATCATGAGTCAAAAAATGAAAATGACGAGATTAAATTATGA
Found at i:16477089 original size:135 final size:134
Alignment explanation
Indices: 16476859--16477112 Score: 293
Period size: 135 Copynumber: 1.9 Consensus size: 134
16476849 CATAAGTCAA
* * * **
16476859 AAAATGAAAATGACCAGGATTAAATCACAAGTCAAAAAATGAAAAATTATGGGATTAAAACATGA
1 AAAATGAAAACGACCAGGATTAAACCACAAGTCAAAAAATGAAAAATGATGAAATTAAAACATGA
* **
16476924 GTCAAAAAATCAAAATAACCTAAATCAAATCATGAGTCAGAGAAAAGAAAATGACTGGGTCACGG
66 GTCAAAAAATCAAAATAAACTAAATCAAATCACAAGTCAGA-AAAAGAAAATGACTGGGTCACGG
16476989 GTTAG
130 GTTAG
* * * *
16476994 AAAATGAAAACGATCAGGATTAAACCATAAGTCACAAAATG-AAAATGATCGAAATTAAATCATG
1 AAAATGAAAACGACCAGGATTAAACCACAAGTCAAAAAATGAAAAATGAT-GAAATTAAAACATG
* *
16477058 AGTCAGAAAAT-AAAA-AAGAC-AAGGA-CTAAATCACAAGTCAGAAAATGAAAATGAC
65 AGTCAAAAAATCAAAATAA-ACTAA--ATC-AAATCACAAGTCAGAAAAAGAAAATGAC
16477113 CAAAATTAAA
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
133 4 0.04
134 25 0.25
135 71 0.71
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.18
Consensus pattern (134 bp):
AAAATGAAAACGACCAGGATTAAACCACAAGTCAAAAAATGAAAAATGATGAAATTAAAACATGA
GTCAAAAAATCAAAATAAACTAAATCAAATCACAAGTCAGAAAAAGAAAATGACTGGGTCACGGG
TTAG
Found at i:16477270 original size:41 final size:41
Alignment explanation
Indices: 16477151--16477271 Score: 133
Period size: 41 Copynumber: 3.0 Consensus size: 41
16477141 AAATGACGAG
* *
16477151 AATTAAATCACAAGTCAAAAAATGCAAACAA-CTAGGATT--
1 AATTAAATCACGAGTCAAAAAATGAAAACAATC-AGGATTAA
* * **
16477190 -ATTAAACCACGAGTCAAAAAATGAAAACGATCAAAATTAA
1 AATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAA
* *
16477230 AATTAAATCACGAGTTAAAAAATGAAAACAATCGGGATTAA
1 AATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAA
16477271 A
1 A
16477272 CCATGAGTCA
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
38 30 0.45
39 1 0.02
41 35 0.53
ACGTcount: A:0.55, C:0.13, G:0.12, T:0.20
Consensus pattern (41 bp):
AATTAAATCACGAGTCAAAAAATGAAAACAATCAGGATTAA
Found at i:16478114 original size:107 final size:104
Alignment explanation
Indices: 16477874--16478266 Score: 268
Period size: 107 Copynumber: 3.7 Consensus size: 104
16477864 TTAGACCACG
* * * *
16477874 AGTCAAAAAATGAAAATGATTGGCATTAAATCACAAGTCAAAAAATGAAAAATGATCAAGATTAA
1 AGTCAAAAAAAGAAAATGATTGGGATTAAATCATAGGTC-AAAAATG-AAAATGATCAAGATTAA
* * ** *
16477939 ACCATGGGTCAAAAAATCAAAATGATCAAAACTAAATCATA
64 ACCATGAGTCAAAAAATAAAAAAAAACAAAACTAAATCATA
* * *** * * *
16477980 AGTCAGATAAGAGAAAATGACCAGGATTTAATCATAGGTCAAAAATTGAAAATGA-CTACGGTTA
1 AGTCA-AAAAAAGAAAATGATTGGGATTAAATCATAGGTCAAAAA-TGAAAATGATC-AAGATTA
* * *
16478044 AACTATGAGTCAAAAAATGAAAAAAAAACAAAATTAAATCATT
63 AACCATGAGTCAAAAAAT-AAAAAAAAACAAAACTAAATCATA
* * * ** * *
16478087 GGTCAAAGAAAAGAAAATGATTGGGATTAAATCATGGGTTAGAAAATGAAAACAACCAAGAGTAA
1 AGTCAAA-AAAAGAAAATGATTGGGATTAAATCATAGGTCA-AAAATGAAAATGATCAAGATTAA
* * * ** * **
16478152 ACCATGAGTCAGAAAGTGAAAATGACCAAAACTAAATCCCGA
64 ACCATGAGTCAAAAAATAAAAAAAAACAAAACTAAAT-CATA
* * * * * * * * *
16478194 A-TCAAAAAATGAAAATGATCGAGACTAAATCACAAGTCAAAAAATAAAAACGAATCAAAATTAA
1 AGTCAAAAAAAGAAAATGATTGGGATTAAATCATAGGTC-AAAAATGAAAATG-ATCAAGATTAA
*
16478258 ATCATGAGT
64 ACCATGAGT
16478267 TAGAGAATGA
Statistics
Matches: 217, Mismatches: 60, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
105 35 0.16
106 76 0.35
107 101 0.47
108 5 0.02
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (104 bp):
AGTCAAAAAAAGAAAATGATTGGGATTAAATCATAGGTCAAAAATGAAAATGATCAAGATTAAAC
CATGAGTCAAAAAATAAAAAAAAACAAAACTAAATCATA
Found at i:16479408 original size:102 final size:102
Alignment explanation
Indices: 16479285--16479470 Score: 245
Period size: 102 Copynumber: 1.8 Consensus size: 102
16479275 GTCAAAAAAT
*
16479285 AAAAAATGATCGAGATTAAACCACT-AGTCAAAAAATGAAAATGACC-GAGATTAAACCATGAGT
1 AAAAAATGATCGAGATTAAACCA-TGAGTCAAAAAATGAAAATGACCAG-GATTAAACCACGAGT
*
16479348 CA-AAAAATGAAAAAGAATCAAGGTTAATTGACCAGTAAA
64 CAGAAAAA-GAAAAACAATCAAGGTTAATTGACCAGTAAA
* * * *
16479387 AAAAAATGA-CTGGGATTAAACCATGAGTCAAAAAATGAGAATGATCAGGGTTAAACCACGAGTC
1 AAAAAATGATC-GAGATTAAACCATGAGTCAAAAAATGAAAATGACCAGGATTAAACCACGAGTC
*
16479451 AGGAAAAGAAAAACAATCAA
65 AGAAAAAGAAAAACAATCAA
16479471 AATTAAACCA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
101 2 0.03
102 66 0.90
103 5 0.07
ACGTcount: A:0.52, C:0.13, G:0.18, T:0.17
Consensus pattern (102 bp):
AAAAAATGATCGAGATTAAACCATGAGTCAAAAAATGAAAATGACCAGGATTAAACCACGAGTCA
GAAAAAGAAAAACAATCAAGGTTAATTGACCAGTAAA
Found at i:16480206 original size:177 final size:173
Alignment explanation
Indices: 16479700--16480218 Score: 497
Period size: 177 Copynumber: 3.0 Consensus size: 173
16479690 TATGAGTCAC
* * * * * *
16479700 AAAATGAAAATGACT-GAAATTAAATCATGAGTCAAAAAATGAAAATGACAGGGATTAAATCACA
1 AAAAAGAAAATGACTAGGAA-TAAATCATGAGTTAGAAAATGAAAACGAC-GAGATTAAATCACA
* * * ** * *
16479764 GGTAAGAAAATGAAAATGATGTAATTAAATCACGGGTTAGAGAATG-AAAATAACCTGAATTAAA
64 AGTCAGAAAATGAAAATGATG-GATTAAATCACAAGTTAGAAAATGAAAAATAACCAGAATTAAA
* * * ** *
16479828 CCACGAGTCAGAAAATAAAAACAATCGGGATTAAACCATGATTTAG
128 CCATGAGTCAAAAAATGAAAACAATCGGGATTAAACCACCAATTAG
* * * * * * * *
16479874 AAAATGAAAATGACTATGATTAAACCATAAGTTAGAAAATGAATACGACCAGGTTTAAATCACAA
1 AAAAAGAAAATGACTAGGAATAAATCATGAGTTAGAAAATGAAAACGACGA-GATTAAATCACAA
* * * **
16479939 GTCA-AGAAATGAAAATGATGGGGATTAAATCACAAGTTAGAAAATGACAAATGATCATTATTAA
65 GTCAGA-AAATGAAAATGAT--GGATTAAATCACAAGTTAGAAAATGAAAAATAACCAGAATTAA
* * *
16480003 ACCATGAGTCCAAAAATGAAAACAATCAGGATTAAACCCCCAATTAG
127 ACCATGAGTCAAAAAATGAAAACAATCGGGATTAAACCACCAATTAG
* * *
16480050 AAAAAGAAAAATG-GTCAGGAATAAATCATGAGTTAGAAAATGAAAACAACTGAGATTAAACCAC
1 AAAAAG-AAAATGACT-AGGAATAAATCATGAGTTAGAAAATGAAAACGAC-GAGATTAAATCAC
* * *
16480114 AAGTCAGAAAATGAAAATGACTAGGATTAAACCACCAGTTAGAAAAAGAAAAATAACCAGAATTA
63 AAGTCAGAAAATGAAAATGA-T-GGATTAAATCACAAGTTAGAAAATGAAAAATAACCAGAATTA
** * *
16480179 AACTGTGAGTTAAAAAATGAGAACAATCGGGATTAAACCA
126 AACCATGAGTCAAAAAATGAAAACAATCGGGATTAAACCA
16480219 TGAGTCAGAA
Statistics
Matches: 274, Mismatches: 60, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
173 1 0.00
174 65 0.24
175 21 0.08
176 56 0.20
177 128 0.47
178 3 0.01
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (173 bp):
AAAAAGAAAATGACTAGGAATAAATCATGAGTTAGAAAATGAAAACGACGAGATTAAATCACAAG
TCAGAAAATGAAAATGATGGATTAAATCACAAGTTAGAAAATGAAAAATAACCAGAATTAAACCA
TGAGTCAAAAAATGAAAACAATCGGGATTAAACCACCAATTAG
Found at i:16480254 original size:32 final size:31
Alignment explanation
Indices: 16480210--16480326 Score: 110
Period size: 30 Copynumber: 3.6 Consensus size: 31
16480200 AACAATCGGG
*
16480210 ATTAAACCATGAGTCAGAAAAAAATGACCGAA
1 ATTAAACCATGAGTCA-AAAAAAATGACCAAA
* **
16480242 ATTAAACTATGAGTCAGAAAATGAAAACAACCAAA
1 ATTAAACCATGAGTC--AAAA--AAAATGACCAAA
* * * *
16480277 ATTAAATCACGAAT-AAAAAAAATGACCTAA
1 ATTAAACCATGAGTCAAAAAAAATGACCAAA
16480307 ATTAAACCATGAGTCAAAAA
1 ATTAAACCATGAGTCAAAAA
16480327 GTGAAAATGA
Statistics
Matches: 66, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
30 20 0.30
31 5 0.08
32 18 0.27
33 3 0.05
34 1 0.02
35 19 0.29
ACGTcount: A:0.56, C:0.15, G:0.11, T:0.18
Consensus pattern (31 bp):
ATTAAACCATGAGTCAAAAAAAATGACCAAA
Found at i:16481027 original size:135 final size:135
Alignment explanation
Indices: 16480832--16481085 Score: 318
Period size: 135 Copynumber: 1.9 Consensus size: 135
16480822 AGCGATTGGG
* * *
16480832 ATTAAACAATGAGTTAGAAAATGAAAATGATCGGGATTAAACCACTAGTCAGAAAAAAAAATGA-
1 ATTAAACAATGAGTCAAAAAATGAAAACGATCGGGATTAAACCACTAGTCAGAAAAAAAAATGAT
*
16480896 C-TGGAATTAAACCATGAGTCAAAAAATGAAAATGATAGAGATTAAATCACGAGTTCGAAAAAAT
66 CGT-G-ATTAAACCATGAGTCAAAAAATGAAAACGATAGAGATTAAATCACGAGTTCGAAAAAAT
16480960 GACTTGA
129 GACTTGA
* * * *
16480967 ATTAAACCATGAGTCAAAAAATGAAAACGA-CTGGATTAAACCA-TGATTTAGAAAATAAAAATG
1 ATTAAACAATGAGTCAAAAAATGAAAACGATCGGGATTAAACCACT-AGTCAGAAAA-AAAAATG
* * * * * *
16481030 ATCGTGATTAAACCATGAGTCAGAAAATGGATACGATCGAGTTTAAATCATGAGTT
64 ATCGTGATTAAACCATGAGTCAAAAAATGAAAACGATAGAGATTAAATCACGAGTT
16481086 AAGAAATGAA
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
133 1 0.01
134 20 0.20
135 77 0.76
136 2 0.02
137 1 0.01
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (135 bp):
ATTAAACAATGAGTCAAAAAATGAAAACGATCGGGATTAAACCACTAGTCAGAAAAAAAAATGAT
CGTGATTAAACCATGAGTCAAAAAATGAAAACGATAGAGATTAAATCACGAGTTCGAAAAAATGA
CTTGA
Found at i:16485672 original size:18 final size:18
Alignment explanation
Indices: 16485615--16485672 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
16485605 AAATAAAATC
* *
16485615 ATGAGTCAGAGAATGAAA
1 ATGAGTCAAAAAATGAAA
*
16485633 ATGA--CAAAAAATTAAA
1 ATGAGTCAAAAAATGAAA
16485649 CCATGAGTCAAAAAATGAAA
1 --ATGAGTCAAAAAATGAAA
16485669 ATGA
1 ATGA
16485673 TCGGGATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 9 0.28
18 12 0.38
20 11 0.34
ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17
Consensus pattern (18 bp):
ATGAGTCAAAAAATGAAA
Found at i:16485712 original size:17 final size:17
Alignment explanation
Indices: 16485690--16485740 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 17
16485680 TAAACCACAA
16485690 ATCAAAAAATGAAAACG
1 ATCAAAAAATGAAAACG
*
16485707 ATC--AAAATTAAATCACG
1 ATCAAAAAATGAAA--ACG
16485724 AGTCAAAAAATGAAAAC
1 A-TCAAAAAATGAAAAC
16485741 AACTAAGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 9
0.71 0.05 0.24
Matches are distributed among these distances:
15 8 0.30
17 7 0.26
18 4 0.15
20 8 0.30
ACGTcount: A:0.61, C:0.14, G:0.10, T:0.16
Consensus pattern (17 bp):
ATCAAAAAATGAAAACG
Found at i:16487342 original size:142 final size:140
Alignment explanation
Indices: 16487174--16487723 Score: 387
Period size: 142 Copynumber: 3.9 Consensus size: 140
16487164 AAATGATAGG
** * * * *
16487174 TTAAACCACTAGTCAAAAAATAAAAATGATCGAGATTAAACCACTAGTCAAAAAAAGAAAAATAA
1 TTAAACCAAGAGTCAAAAAATAAAAATGATCGAGATTAAACCACCAGTTAGAAAAAGAAAAATGA
* * * * *
16487239 CCAGGATTAAACCACGAGTTAGAAAATGAAAATGATAGGGATTAAACGATGAGTCAAAAAAAGAA
66 -C-GGATTAAACCATGAGTTAGAAAATGAAAATAACAGAGATTAAACCATGAGTCAAAAAAAGAA
*
16487304 AAACAACCAGGA
129 AAACAACCAGAA
* * * *
16487316 TTAAACCAAGAGTCAGAAAATGAAAAT-AACTGAGATTAAACTACCAGTTAGAAAAAGAAAAATG
1 TTAAACCAAGAGTCAAAAAATAAAAATGATC-GAGATTAAACCACCAGTTAGAAAAAGAAAAATG
* * * * * *
16487380 ATCGAGATTAAACCATGAGTCAAAAAATGAGAATAACCGAGATTAAACCATGAGTTAGAAAAAGA
65 A-CG-GATTAAACCATGAGTTAGAAAATGAAAATAACAGAGATTAAACCATGAGTCAAAAAAAGA
* ** *
16487445 TAAATGACTAGAA
128 AAAACAACCAGAA
* * * * * * *
16487458 TTAAACCATGAGTGAAAAAATAAAAATGATTGGGATTAAATCACGAGTTAGAAAATG-AAAATGA
1 TTAAACCAAGAGTCAAAAAATAAAAATGATCGAGATTAAACCACCAGTTAGAAAAAGAAAAATGA
* * * * **
16487522 TTGGATTAAACTATGAGTTAGAAAATGAAAAATGACCA-AGAGTAAACCACAAGTCAAAAAATA-
66 -CGGATTAAACCATGAGTTAGAAAATG-AAAAT-AACAGAGATTAAACCATGAGTCAAAAAA-AG
* *
16487585 AAAAA-GACTAGAA
127 AAAAACAACCAGAA
* * * * * ** ** * *
16487598 TTAAATCATGAGTCAGAGAAAA-GAAAACGA-CTGAAATTAAATTATGAGTCAGAAAATG-AAAA
1 TTAAACCAAGAGTCA-A-AAAATAAAAATGATC-GAGATTAAACCACCAGTTAGAAAAAGAAAAA
* * ** * * *
16487660 TGATCGGGATTAAACCATGAGTCACAAAATGAAAATAATTGAAATTAAATCATGACTCAAAAAA
63 TGA-C-GGATTAAACCATGAGTTAGAAAATGAAAATAACAGAGATTAAACCATGAGTCAAAAAA
16487724 TAAACACAGC
Statistics
Matches: 323, Mismatches: 74, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
140 43 0.13
141 96 0.30
142 183 0.57
143 1 0.00
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.19
Consensus pattern (140 bp):
TTAAACCAAGAGTCAAAAAATAAAAATGATCGAGATTAAACCACCAGTTAGAAAAAGAAAAATGA
CGGATTAAACCATGAGTTAGAAAATGAAAATAACAGAGATTAAACCATGAGTCAAAAAAAGAAAA
ACAACCAGAA
Found at i:16488883 original size:129 final size:128
Alignment explanation
Indices: 16488647--16488886 Score: 277
Period size: 129 Copynumber: 1.9 Consensus size: 128
16488637 ATGATTGGGA
* ** * * * *
16488647 TTAAACCACGAGTTAAAAAATGAAAACGATCGGGATTAAAACATTAGTTAGAAAATGAATACGAT
1 TTAAACCACGAGTTAAAAAATAAAAACGATCGGGATTAAAACAAAAGTCAAAAAATGAAAACAAT
* * * * * * *
16488712 CAGGTTTAAATCACTAGTCAAAAAATGAAAATGACCGAGATTAAATTATGAATCAGAAAAGGT
66 CAAGATTAAAGCACGAGTCAAAAAACGAAAACGACAGAGATTAAATTATGAATCAGAAAAGGT
* *
16488775 TTAAATCACGAGTTAAAAAATAAAAAATGA-CTGGGATTAAAACAAAAGTCAAAAAATGAAAACA
1 TTAAACCACGAGTTAAAAAAT-AAAAACGATC-GGGATTAAAACAAAAGTCAAAAAATGAAAACA
* *
16488839 ATCAAGATTAAAGCACGAGTTAGAAAACGAAAACGACTAG-GATTAAAT
64 ATCAAGATTAAAGCACGAGTCAAAAAACGAAAACGAC-AGAGATTAAAT
16488887 CACAAGTTAG
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
128 21 0.23
129 69 0.76
130 1 0.01
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.21
Consensus pattern (128 bp):
TTAAACCACGAGTTAAAAAATAAAAACGATCGGGATTAAAACAAAAGTCAAAAAATGAAAACAAT
CAAGATTAAAGCACGAGTCAAAAAACGAAAACGACAGAGATTAAATTATGAATCAGAAAAGGT
Found at i:16490023 original size:100 final size:100
Alignment explanation
Indices: 16489862--16490053 Score: 285
Period size: 100 Copynumber: 1.9 Consensus size: 100
16489852 AAAGGACAGA
* * *
16489862 GATTAAACCATAAGTCAGAAAATGAAAATGACCCCGATTAAACCATGAGTCAAAAAATGAAAATG
1 GATTAAACCATAAGGCAGAAAAAGAAAATGACCACGATTAAACCATGAGTCAAAAAATGAAAATG
**
16489927 ATCGAGATTAAACCATGAGTCAAAAAAATGACTGG
66 ATCGAGATTAAACCACAAGTCAAAAAAATGACTGG
* * * *
16489962 GATTAAACCATAAGGGAGAAAAAGAAAATGACTAGGATTAAACCATTAGTCAAAAAATGAAAATG
1 GATTAAACCATAAGGCAGAAAAAGAAAATGACCACGATTAAACCATGAGTCAAAAAATGAAAATG
* *
16490027 ATTGAGATTAAACTACAAGTCAAAAAA
66 ATCGAGATTAAACCACAAGTCAAAAAA
16490054 TCAAAATGAT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (100 bp):
GATTAAACCATAAGGCAGAAAAAGAAAATGACCACGATTAAACCATGAGTCAAAAAATGAAAATG
ATCGAGATTAAACCACAAGTCAAAAAAATGACTGG
Found at i:16491916 original size:142 final size:141
Alignment explanation
Indices: 16491744--16492015 Score: 327
Period size: 142 Copynumber: 1.9 Consensus size: 141
16491734 GAAAATGACA
* * * * *
16491744 AGGATTAAACCACCAGTTAGGAAATGAAAATGACTTG-GATTAAACCATGAGTC-AAAAGATAAA
1 AGGATTAAACCACAAGTGAGGAAATAAAAATGA-TCGAGATTAAACCACGAGTCTAAAA-ATAAA
* * * **
16491807 AATGA-TCAGGATTAAATCACAAGTCAAAAAAAGAAAAATGACCGGGATTAAACCATGAG-CTAA
64 AATGACT-AGAATGAAACCACAAGTCAAAAAAAG-AAAATGACCAAGATTAAACCATGAGTC-AA
16491870 AAAAACAAAAACAATC
126 AAAAACAAAAACAATC
* * * *
16491886 AGGATTAAACCATAAGTGAGGAAATAAAAATGATCGAGATTAAATCACGAGTCTGAAAATGAAAA
1 AGGATTAAACCACAAGTGAGGAAATAAAAATGATCGAGATTAAACCACGAGTCTAAAAATAAAAA
* *
16491951 TGACTAGAATGAAACCATAAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAAAA
66 TGACTAGAATGAAACCACAAGTCAAAAAAAGAAAATGACCAAGATTAAACCATGAGTCAAAAAAA
16492016 TTTGTTGAAA
Statistics
Matches: 110, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
141 32 0.29
142 74 0.67
143 4 0.04
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.18
Consensus pattern (141 bp):
AGGATTAAACCACAAGTGAGGAAATAAAAATGATCGAGATTAAACCACGAGTCTAAAAATAAAAA
TGACTAGAATGAAACCACAAGTCAAAAAAAGAAAATGACCAAGATTAAACCATGAGTCAAAAAAA
CAAAAACAATC
Found at i:16491979 original size:107 final size:107
Alignment explanation
Indices: 16491780--16491979 Score: 235
Period size: 107 Copynumber: 1.9 Consensus size: 107
16491770 AAAATGACTT
*
16491780 GGATTAAACCATGAGTCAAAAGATAAAAATGATCAGGATTAAATCACAAGTCAAAAAAAGAAAAA
1 GGATTAAACCATAAGTCAAAAGATAAAAATGATCAGGATTAAATCACAAGTCAAAAAAAGAAAAA
* * * * *
16491845 TGACCGGGATTAAACCATGAGCTAAAAAAACAAAAACAATCA
66 TGACCAGAATGAAACCATAAGCAAAAAAAACAAAAACAATCA
* * * ** *
16491887 GGATTAAACCATAAGTGAGGAA-ATAAAAATGATC-GAGATTAAATCACGAGTCTGAAAATG-AA
1 GGATTAAACCATAAGTCA-AAAGATAAAAATGATCAG-GATTAAATCACAAGTCAAAAAAAGAAA
*
16491949 AATGACTAGAATGAAACCATAAGTCAAAAAA
64 AATGACCAGAATGAAACCATAAG-CAAAAAA
16491980 TGAAAATGAC
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
106 21 0.27
107 54 0.70
108 2 0.03
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.17
Consensus pattern (107 bp):
GGATTAAACCATAAGTCAAAAGATAAAAATGATCAGGATTAAATCACAAGTCAAAAAAAGAAAAA
TGACCAGAATGAAACCATAAGCAAAAAAAACAAAAACAATCA
Found at i:16492081 original size:136 final size:136
Alignment explanation
Indices: 16491889--16492150 Score: 337
Period size: 136 Copynumber: 1.9 Consensus size: 136
16491879 AACAATCAGG
* * **
16491889 ATTAAACCATAAGTGAGGAAATAAAAATGATCGAGATTAAATCACGAGTCTGAAAATGAAAATGA
1 ATTAAACCATAAGTGAGGAAATAAAAATGATCGAGATTAAACCACAAGTCAAAAAATGAAAATGA
*
16491954 CTAG-AATGAAACCATAAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAAAATT
66 -TAGAAATGAAACCACAAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAAAATT
16492018 TGTTGAA
130 TGTTGAA
* * * * *
16492025 ATTAAACCATGAGTTAGTAAATCAAAATGATCGGGATTAAACCACAAGTCAAAAAATGAAAATGA
1 ATTAAACCATAAGTGAGGAAATAAAAATGATCGAGATTAAACCACAAGTCAAAAAATGAAAATGA
* * * * * * * **
16492090 TCGAAATTAAACCACGAGTCAAAAAATTAAATTGATCAGGATTAAATTATGAGTCAAAAAA
66 TAGAAATGAAACCACAAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAAA
16492151 TGAAAATGAC
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
135 2 0.02
136 104 0.98
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.22
Consensus pattern (136 bp):
ATTAAACCATAAGTGAGGAAATAAAAATGATCGAGATTAAACCACAAGTCAAAAAATGAAAATGA
TAGAAATGAAACCACAAGTCAAAAAATGAAAATGACCAAGATTAAACCATGAGTCAAAAAAATTT
GTTGAA
Found at i:16492109 original size:171 final size:173
Alignment explanation
Indices: 16491502--16492194 Score: 535
Period size: 177 Copynumber: 4.0 Consensus size: 173
16491492 TGACTAGGAG
* * * ** **
16491502 TAAACCATGAG-TCAAAAAATAAAAACAACCAAAATTAAACCATGAGTCAGAAAAATGAAAATGA
1 TAAACCATGAGCTAAAAAAACAAAAACAATCAGGATTAAACCACAAGTCA-AAAAATGAAAATGA
* * * * * * *
16491566 -CTTAAATTAAATCACAAGTCAGAAAATGAAAATGACCAGGATTAAACCACT-AGTTAGAAAATG
65 TC-GAAATTAAACCACGAGTCTGAAAATGAAAATGACTAGGATTAAACCA-TGAGTCAAAAAATG
* * ** * * **
16491629 AAAATGACCATGATTAAACCATTAATCAGGAAATAAAAATGACTGGGAT
128 AAAATGACCAGGATTAAATCACGAGTCA--AAA-AAAAATGACCGAAAT
* * * * * *
16491678 TAAACCATCA-ATCAGAAAAAGAAAAACAAATGA-GATTAGACCACAAGTCAAAAAATGAAAATG
1 TAAACCATGAGCT-AAAAAAACAAAAAC-AATCAGGATTAAACCACAAGTCAAAAAATGAAAATG
* * * *
16491741 A-C-AAGGATTAAACCACCAGT-TAGGAAATGAAAATGACTTGGATTAAACCATGAGTCAAAAGA
64 ATCGAA--ATTAAACCACGAGTCT-GAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAA
* * * **
16491803 TAAAAATGATCAGGATTAAATCACAAGTCAAAAAAAGAAAAATGACCGGGAT
126 TGAAAATGACCAGGATTAAATCACGAGTC---AAAA-AAAAATGACCGAAAT
* * ** *
16491855 TAAACCATGAGCTAAAAAAACAAAAACAATCAGGATTAAACCATAAGTGAGGAAATAAAAATGAT
1 TAAACCATGAGCTAAAAAAACAAAAACAATCAGGATTAAACCACAAGTCAAAAAATGAAAATGAT
* * * * *
16491920 CGAGATTAAATCACGAGTCTGAAAATGAAAATGACTAGAATGAAACCATAAGTCAAAAAATGAAA
66 CGAAATTAAACCACGAGTCTGAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAA
* * * ** **
16491985 ATGACCAAGATTAAACCATGAGTCAAAAAAATTTG-TTGAAAT
131 ATGACCAGGATTAAATCACGAGTCAAAAAAAAATGACCGAAAT
* ** * ** *
16492027 TAAACCATGAGTTAGTAAATC-AAAATGATCGGGATTAAACCACAAGTCAAAAAATGAAAATGAT
1 TAAACCATGAGCTAAAAAAACAAAAACAATCAGGATTAAACCACAAGTCAAAAAATGAAAATGAT
** * * **
16492091 CGAAATTAAACCACGAGTCAAAAAATTAAATTGA-TCAGGATTAAATTATGAGTCAAAAAATGAA
66 CGAAATTAAACCACGAGTCTGAAAATGAAAATGACT-AGGATTAAACCATGAGTCAAAAAATGAA
16492155 AATGACCAGGATTAAATCACGAGTCAGAAAATGAAAATGA
130 AATGACCAGGATTAAATCACGAGTCA-AAAA--AAAATGA
16492195 TAAAGATTAA
Statistics
Matches: 409, Mismatches: 88, Indels: 41
0.76 0.16 0.08
Matches are distributed among these distances:
170 1 0.00
171 109 0.27
172 24 0.06
173 5 0.01
174 10 0.02
175 1 0.00
176 95 0.23
177 156 0.38
178 6 0.01
179 2 0.00
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.19
Consensus pattern (173 bp):
TAAACCATGAGCTAAAAAAACAAAAACAATCAGGATTAAACCACAAGTCAAAAAATGAAAATGAT
CGAAATTAAACCACGAGTCTGAAAATGAAAATGACTAGGATTAAACCATGAGTCAAAAAATGAAA
ATGACCAGGATTAAATCACGAGTCAAAAAAAAATGACCGAAAT
Found at i:16495699 original size:102 final size:104
Alignment explanation
Indices: 16495420--16495713 Score: 344
Period size: 102 Copynumber: 2.8 Consensus size: 104
16495410 AATGATGAAA
* * * *
16495420 ATTAAACCATGAGTCAAAAAATTAAAATGATCATAATTAAATCATAAGTCAGAAAATGAAAACAA
1 ATTAAATCATGAGTCAAAAAATAAAAATGATGA-AATTAAATCATGAGTCAGAAAATGAAAAC-A
* * *
16495485 CTAAAATTAAATCACAAGTCAGAGACAAAACAACGATCGAG
64 TTGAAATTAAATCACAAGTCAGAGACAAAACAACGATAGAG
* * *
16495526 ATTAAATCATGAGTCAAAAAATAAAAATGATCGAGATTAAACCATGAGTCAAAAAATGAAAATCA
1 ATTAAATCATGAGTCAAAAAATAAAAATGAT-GAAATTAAATCATGAGTCAGAAAATGAAAA-CA
* * * *
16495591 TCGAAATTAAATCACAATTTA-A-A-AAAA-AACGATAGGG
64 TTGAAATTAAATCACAAGTCAGAGACAAAACAACGATAGAG
* * *
16495628 ATTAAATCATGAGTCAAAAAATGAAAATGACTGAAATTAAATCACGAGCCAGAAAATGAAAACGA
1 ATTAAATCATGAGTCAAAAAATAAAAATGA-TGAAATTAAATCATGAGTCAGAAAATGAAAAC-A
*
16495693 TTGAAATTAAAACACAAGTCA
64 TTGAAATTAAATCACAAGTCA
16495714 TAAAATGAAT
Statistics
Matches: 160, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
101 1 0.01
102 80 0.50
103 5 0.03
104 1 0.01
105 1 0.01
106 70 0.44
107 2 0.01
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.20
Consensus pattern (104 bp):
ATTAAATCATGAGTCAAAAAATAAAAATGATGAAATTAAATCATGAGTCAGAAAATGAAAACATT
GAAATTAAATCACAAGTCAGAGACAAAACAACGATAGAG
Found at i:16495740 original size:243 final size:242
Alignment explanation
Indices: 16495008--16495830 Score: 632
Period size: 243 Copynumber: 3.4 Consensus size: 242
16494998 TTAAACCATG
* * * * ** *
16495008 AGTCAGAAAATGAAAATGACCCAAATTAAATCATGAGTCAAAAAAT-AAAAACAATCAGAATTAA
1 AGTCAGGAAA-GAAAACGACCGAGATTAAATCATGAGTCAAAAAATGAAAAATGATCAGGATTAA
* * * ** * * * * *
16495072 ACCTA-GATTCAAAAAATTAATA-CTATCGAGTTTAAATCGCGA-GTAAGTAAATGAAAATGAAA
65 ACC-ACGAGTCAAAAAATGAAAATC-ATCGAAATTAAATCACAATTTAA--AAA--AAAACGATA
* ** ** * ** *
16495134 GGGATTAAATCATAAGTCAAAAAATGAAAAACAATCG-GGATTAAACCATGAGTTAAAAAATAAA
124 GGGATTAAATCATAGGTCAAAAAATG-AAAATGAT-GAAAATTAAACCACGAGCCAAAAAAT-GA
* * * * * *
16495198 AAATGATCA-AGATTAAATCACAAGTCAGAAAATGAAAATAACCATAACTAAATCACG
186 AAACGATCATA-ATTAAAACACAAGTCAGAAAATGAAAACAACCAAAATTAAATCACA
* * * ** * *
16495255 AGTCAGTGAAAAGAAAATGA-CTAGAATTAAACCACAAGTCAGAAAAT-AAAAATGACCTA-GAT
1 AGTCAG-G-AAAGAAAACGACCGAG-ATTAAATCATGAGTCAAAAAATGAAAAATGATC-AGGAT
* * * * * * * * ** ** *
16495317 AAAAGCACGAGTCAGAAAATGAAAACCATTGGAATTAAATTACGAGTCAAAAAATGAAAATAAAA
62 TAAACCACGAGTCAAAAAATGAAAATCATCGAAATTAAATCAC-AATTTAAAAA--AAAACGATA
* * * *
16495382 AGGATTAAATCATAGGTCAAAAAATGAAAATGATGAAAATTAAACCATGAGTCAAAAAATTAAAA
124 GGGATTAAATCATAGGTCAAAAAATGAAAATGATGAAAATTAAACCACGAGCCAAAAAATGAAAA
* * * *
16495447 TGATCATAATTAAATCATAAGTCAGAAAATGAAAACAACTAAAATTAAATCACA
189 CGATCATAATTAAAACACAAGTCAGAAAATGAAAACAACCAAAATTAAATCACA
*
16495501 AGTCAGAGACAA-AACAACGATCGAGATTAAATCATGAGTCAAAAAAT-AAAAATGATC-GAGAT
1 AGTCAG-GA-AAGAA-AACGACCGAGATTAAATCATGAGTCAAAAAATGAAAAATGATCAG-GAT
*
16495563 TAAACCATGAGTCAAAAAATGAAAATCATCGAAATTAAATCACAATTTAAAAAAAAACGATAGGG
62 TAAACCACGAGTCAAAAAATGAAAATCATCGAAATTAAATCACAATTTAAAAAAAAACGATAGGG
* *
16495628 ATTAAATCAT-GAGTCAAAAAATGAAAATGACTG-AAATTAAATCACGAGCCAGAAAATGAAAAC
127 ATTAAATCATAG-GTCAAAAAATGAAAATGA-TGAAAATTAAACCACGAGCCAAAAAATGAAAAC
* * * ** **
16495691 GATTGA-AATTAAAACACAAGTCATAAAATGAATACAACCAAGTTTAAATCATG
190 GA-TCATAATTAAAACACAAGTCAGAAAATGAAAACAACCAAAATTAAATCACA
* *
16495744 AGTCAGGAAATGAAAATGACCGAGATTAAATTATGAGTCAAAAAATGAAAAATGATCAGGATTAA
1 AGTCAGGAAA-GAAAACGACCGAGATTAAATCATGAGTCAAAAAATGAAAAATGATCAGGATTAA
* *
16495809 ACCACGAGTTAAAAAATTAAAA
65 ACCACGAGTCAAAAAATGAAAA
16495831 GGACCGAGAT
Statistics
Matches: 467, Mismatches: 87, Indels: 48
0.78 0.14 0.08
Matches are distributed among these distances:
241 2 0.00
242 32 0.07
243 143 0.31
244 5 0.01
245 10 0.02
246 129 0.28
247 40 0.09
248 99 0.21
249 5 0.01
250 2 0.00
ACGTcount: A:0.54, C:0.12, G:0.14, T:0.20
Consensus pattern (242 bp):
AGTCAGGAAAGAAAACGACCGAGATTAAATCATGAGTCAAAAAATGAAAAATGATCAGGATTAAA
CCACGAGTCAAAAAATGAAAATCATCGAAATTAAATCACAATTTAAAAAAAAACGATAGGGATTA
AATCATAGGTCAAAAAATGAAAATGATGAAAATTAAACCACGAGCCAAAAAATGAAAACGATCAT
AATTAAAACACAAGTCAGAAAATGAAAACAACCAAAATTAAATCACA
Found at i:16496403 original size:102 final size:102
Alignment explanation
Indices: 16496228--16496492 Score: 261
Period size: 102 Copynumber: 2.6 Consensus size: 102
16496218 ATGATTGGCG
* * *
16496228 TTAAACCATGAGTCAGAAAATAAAAACGATCAAGATTAAATCACGAGTTAAAAAATAAAAATGGC
1 TTAAACCATGAGTCAAAAAATAAAAACGATCAAGATTAAATCACGAGTAAAAAAATAAAAATGGA
**
16496293 TTGGATTAAATCA-TAAGTCAAATAAAAATAACCAGGA
66 AAGGATTAAATCACT-AGTCAAATAAAAATAACCAGGA
* * *
16496330 TTAAACCATGAGTCAAAAAATTAATACGATC-GGATTTAAATCACGAGTAAAAAAATAAAAAT-G
1 TTAAACCATGAGTCAAAAAATAAAAACGATCAAGA-TTAAATCACGAGTAAAAAAATAAAAATGG
* *
16496393 AAAGGTATTAAATCACTAGTCAAAAAATAAAAAATGATC-GAGA
65 AAAGG-ATTAAATCACTAGTC---AAAT-AAAAATAACCAG-GA
* * * * * * *
16496436 TTAAACCATAAGTCAGAAAATGAAAATGACCAGGATTAAA-CTATGAGTAAAAAAATA
1 TTAAACCATGAGTCAAAAAATAAAAACGATCAAGATTAAATC-ACGAGTAAAAAAATA
16496493 TCAGGATTAA
Statistics
Matches: 136, Mismatches: 17, Indels: 16
0.80 0.10 0.09
Matches are distributed among these distances:
101 5 0.04
102 67 0.49
103 1 0.01
105 6 0.04
106 54 0.40
107 3 0.02
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.22
Consensus pattern (102 bp):
TTAAACCATGAGTCAAAAAATAAAAACGATCAAGATTAAATCACGAGTAAAAAAATAAAAATGGA
AAGGATTAAATCACTAGTCAAATAAAAATAACCAGGA
Found at i:16496502 original size:99 final size:101
Alignment explanation
Indices: 16496410--16496593 Score: 234
Period size: 100 Copynumber: 1.8 Consensus size: 101
16496400 TTAAATCACT
* * *
16496410 AGTC-AAAAAATAAAAAATGATC-GAGATTAAACCATAAGTCAGA-AAATGAAAATGACCAGG-A
1 AGTCAAAAAAAT-AAAAATAACCAGA-ATTAAACCATAAGTCAGAGAAAAGAAAATGA-CAGGAA
16496471 TTAAACTATGAGT-AAAAAAATATCAGGATTAAACCAAA
63 TTAAACTATGAGTCAAAAAAATATCAGGATTAAACCAAA
* * * * *
16496509 AGTCAAAAAAATGAAAATAACCAGAATTAAATCATGAGTTAGAGAAAAGAAAATGACTGGAATTA
1 AGTCAAAAAAATAAAAATAACCAGAATTAAACCATAAGTCAGAGAAAAGAAAATGACAGGAATTA
16496574 AACTATGAGTCAAAAAAATA
66 AACTATGAGTCAAAAAAATA
16496594 AAAATGGTTG
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
99 29 0.40
100 34 0.47
101 9 0.12
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (101 bp):
AGTCAAAAAAATAAAAATAACCAGAATTAAACCATAAGTCAGAGAAAAGAAAATGACAGGAATTA
AACTATGAGTCAAAAAAATATCAGGATTAAACCAAA
Found at i:16496503 original size:63 final size:65
Alignment explanation
Indices: 16496421--16496547 Score: 172
Period size: 64 Copynumber: 2.0 Consensus size: 65
16496411 GTCAAAAAAT
* * * *
16496421 AAAAAATGATCGAGATTAAACCATAAGTC-AGAAAATGAAAATGACCAGGATTAAA-CTATGAGT
1 AAAAAATGATCGAGATTAAACCAAAAGTCAAAAAAATGAAAATAACCAGAATTAAATC-ATGAGT
16496484 A
65 A
16496485 AAAAAAT-ATC-AGGATTAAACCAAAAGTCAAAAAAATGAAAATAACCAGAATTAAATCATGAGT
1 AAAAAATGATCGA-GATTAAACCAAAAGTCAAAAAAATGAAAATAACCAGAATTAAATCATGAGT
16496548 TAGAGAAAAG
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
62 1 0.02
63 18 0.32
64 36 0.64
65 1 0.02
ACGTcount: A:0.55, C:0.11, G:0.14, T:0.20
Consensus pattern (65 bp):
AAAAAATGATCGAGATTAAACCAAAAGTCAAAAAAATGAAAATAACCAGAATTAAATCATGAGTA
Found at i:16497024 original size:100 final size:104
Alignment explanation
Indices: 16496813--16497081 Score: 273
Period size: 100 Copynumber: 2.6 Consensus size: 104
16496803 AAATGTCGTA
* * * * * * * ** *
16496813 ATTAAATCATGAGTCAAGAAATTAAAATGATCA-AGATTAAACCACGTGTCAAAAAATAAAAATG
1 ATTAAATCAAGAGTCAAAAAATGAAAAGGAT-AGGGATTAAACCATGAGTCTGAAAATGAAAATG
* *
16496877 ATCAAAATTAAATCACAAATTAAAGAAAAATATGATCGAG
65 ATCAAAAGTAAATCACAAATTAAAGAAAAATATGATAGAG
*
16496917 ATTAAATCACAG-GTCAAAAAATGAAAAGGATCGGGATTAAACCATGAGT-TAGAAAA-GAAAAT
1 ATTAAATCA-AGAGTCAAAAAATGAAAAGGATAGGGATTAAACCATGAGTCT-GAAAATGAAAAT
* *
16496979 GATCAAAAGTAAATCAC-GATTCAA-AAAAA-ATGATAGAG
64 GATCAAAAGTAAATCACAAATTAAAGAAAAATATGATAGAG
* * * * * *
16497017 ATTAAATCATGAGTTAGAAAATGAAAATGATAGGGATTAAATCGTGAGTCTGAAAATGAAAATGA
1 ATTAAATCAAGAGTCAAAAAATGAAAAGGATAGGGATTAAACCATGAGTCTGAAAATGAAAATGA
16497082 CCAGGATTAC
Statistics
Matches: 137, Mismatches: 22, Indels: 15
0.79 0.13 0.09
Matches are distributed among these distances:
99 1 0.01
100 53 0.39
101 14 0.10
102 5 0.04
103 21 0.15
104 42 0.31
105 1 0.01
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.22
Consensus pattern (104 bp):
ATTAAATCAAGAGTCAAAAAATGAAAAGGATAGGGATTAAACCATGAGTCTGAAAATGAAAATGA
TCAAAAGTAAATCACAAATTAAAGAAAAATATGATAGAG
Found at i:16498784 original size:20 final size:19
Alignment explanation
Indices: 16498690--16498784 Score: 53
Period size: 20 Copynumber: 5.3 Consensus size: 19
16498680 GAAAATGACC
16498690 AAAATTAAATCATGAGTCA-
1 AAAATTAAA-CATGAGTCAG
* *
16498709 AAAAATAAAAATGA-TC-G
1 AAAATTAAACATGAGTCAG
*
16498726 -AAATTAAACCATGAGTTAG
1 AAAATTAAA-CATGAGTCAG
* *
16498745 AAAATGAAA-ATGA--C-C
1 AAAATTAAACATGAGTCAG
*
16498760 CAAATTAAATCATGAGTCAG
1 AAAATTAAA-CATGAGTCAG
16498780 AAAAT
1 AAAAT
16498785 GAAAACAATC
Statistics
Matches: 54, Mismatches: 12, Indels: 19
0.64 0.14 0.22
Matches are distributed among these distances:
15 7 0.13
16 7 0.13
17 10 0.19
18 9 0.17
19 10 0.19
20 11 0.20
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.22
Consensus pattern (19 bp):
AAAATTAAACATGAGTCAG
Found at i:16499468 original size:102 final size:105
Alignment explanation
Indices: 16499184--16499460 Score: 260
Period size: 106 Copynumber: 2.7 Consensus size: 105
16499174 AAATGACTGG
* * * * * ** * * *
16499184 GATTAAACCACGAGTTAAAAAATTAAAATGATCGTAATTAAATCATAAGTCAAAAAATGAAAACA
1 GATTAAATCACGAGTCAAAAAATAAAAACGATGGGGATTAAACCATGAGTCAAAAAATGAAAACG
* *
16499249 ACCA-AAATTAAATCACAAGTCAGAGGAAAGAAAATGATTAA
66 A-TAGAAATTAAATCACAAGTCAGA-GAAAAAAAATGATTAA
* * *
16499290 GATTAAATCATGAGTCAGAAAATAAAAATGATGGGGATTAAACCATGAGTCAAAAAATGAAAACG
1 GATTAAATCACGAGTCAAAAAATAAAAACGATGGGGATTAAACCATGAGTCAAAAAATGAAAACG
* *
16499355 ATCGAAATTAAATCACAATTCA-A-AAAAAAAATGA-TAA
66 ATAGAAATTAAATCACAAGTCAGAGAAAAAAAATGATTAA
* * * * * *
16499392 GGATTAAATC-CGAGTCAAAAAATGAAAACGAT-TGGATTTAAATCATGAGTCTAAGAATTAAAA
1 -GATTAAATCACGAGTCAAAAAATAAAAACGATGGGGA-TTAAACCATGAGTCAAAAAATGAAAA
*
16499455 TGATAG
64 CGATAG
16499461 GCATTAAACC
Statistics
Matches: 142, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
101 3 0.02
102 47 0.33
103 19 0.13
105 1 0.01
106 72 0.51
ACGTcount: A:0.53, C:0.10, G:0.15, T:0.22
Consensus pattern (105 bp):
GATTAAATCACGAGTCAAAAAATAAAAACGATGGGGATTAAACCATGAGTCAAAAAATGAAAACG
ATAGAAATTAAATCACAAGTCAGAGAAAAAAAATGATTAA
Found at i:16501553 original size:10 final size:10
Alignment explanation
Indices: 16501533--16501574 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
16501523 TATTAACAAT
16501533 TATAATAAATA
1 TATAAT-AATA
16501544 TATAATAATA
1 TATAATAATA
16501554 TAT-ATAAT-
1 TATAATAATA
16501562 TATACATAATA
1 TATA-ATAATA
16501573 TA
1 TA
16501575 GTTTATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 3 0.11
9 5 0.18
10 12 0.43
11 8 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
TATAATAATA
Found at i:16501562 original size:29 final size:28
Alignment explanation
Indices: 16501505--16501574 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 28
16501495 AATATATACA
*
16501505 ATAATAAATATCATTAATTATTAACAATT
1 ATAATAAATAT-ATTAATAATTAACAATT
*
16501534 ATAATAAATATA-TAATAATATATATAATT
1 ATAATAAATATATTAATAAT-TA-ACAATT
16501563 ATACAT-AATATA
1 ATA-ATAAATATA
16501575 GTTTATTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
27 6 0.17
28 3 0.08
29 25 0.69
30 2 0.06
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (28 bp):
ATAATAAATATATTAATAATTAACAATT
Found at i:16501612 original size:32 final size:30
Alignment explanation
Indices: 16501571--16501649 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 30
16501561 TTATACATAA
* *
16501571 TATAGTTTATTAATATTAATTGAACTTATTATG
1 TATAATTTATTAATATAAATT-AA-TTA-TATG
16501604 T-TAATTTATTAATATAAATTAATTATATG
1 TATAATTTATTAATATAAATTAATTATATG
*
16501633 TATAA-TTATTAGTATAA
1 TATAATTTATTAATATAA
16501650 CAATATAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 16 0.38
30 6 0.14
31 2 0.05
32 17 0.40
33 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (30 bp):
TATAATTTATTAATATAAATTAATTATATG
Found at i:16501642 original size:29 final size:32
Alignment explanation
Indices: 16501576--16501649 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 32
16501566 CATAATATAG
*
16501576 TTTATTAATATTAATTGAACTTATTATGTTAA
1 TTTATTAATATAAATTGAACTTATTATGTTAA
16501608 TTTATTAATATAAATT-AA-TTA-TATGTATAA
1 TTTATTAATATAAATTGAACTTATTATGT-TAA
*
16501638 -TTATTAGTATAA
1 TTTATTAATATAA
16501650 CAATATAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 16 0.41
30 6 0.15
31 2 0.05
32 15 0.38
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (32 bp):
TTTATTAATATAAATTGAACTTATTATGTTAA
Found at i:16501713 original size:15 final size:15
Alignment explanation
Indices: 16501695--16501731 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
16501685 TAAATTAATA
16501695 TATAATTTATAGTAT
1 TATAATTTATAGTAT
16501710 TATAATTTATAGTAT
1 TATAATTTATAGTAT
16501725 TATAATT
1 TATAATT
16501732 CAATAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (15 bp):
TATAATTTATAGTAT
Found at i:16501955 original size:20 final size:19
Alignment explanation
Indices: 16501893--16501955 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
16501883 TAAGTACATA
*
16501893 ATAATAAGTATTTAATTAT
1 ATAATAAGTAATTAATTAT
*
16501912 A-AAT-AGAAATATAA-TAT
1 ATAATAAGTAAT-TAATTAT
*
16501929 TTAATAAGTTAATTAATTAT
1 ATAATAAG-TAATTAATTAT
16501949 ATAATAA
1 ATAATAA
16501956 TTTATATACA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
17 7 0.21
18 9 0.26
19 6 0.18
20 12 0.35
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAATAAGTAATTAATTAT
Found at i:16502824 original size:16 final size:15
Alignment explanation
Indices: 16502770--16502841 Score: 53
Period size: 15 Copynumber: 4.7 Consensus size: 15
16502760 GTTTTGTCAT
16502770 TTATTATAATCCA-AAA
1 TTATTATAAT--ATAAA
*
16502786 TTATTA-ATTAATAAA
1 TTATTATAAT-ATAAA
*
16502801 TT-TAATAATATTAAA
1 TTATTATAATA-TAAA
16502816 TTATTATAATATATAA
1 TTATTATAATATA-AA
16502832 TTA-TATAATA
1 TTATTATAATA
16502842 ATAGATTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
14 4 0.09
15 24 0.52
16 18 0.39
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
TTATTATAATATAAA
Found at i:16503069 original size:31 final size:31
Alignment explanation
Indices: 16503001--16503069 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
16502991 TTAATGATAA
**
16503001 ATATAATAAATATTTAAATTATGTTTCTATT
1 ATATAATAAATATTTAAATTATAATTCTATT
*
16503032 AT-TAATAAATTATTTATATTA-AATTCTATT
1 ATATAATAAA-TATTTAAATTATAATTCTATT
16503062 ATATAATA
1 ATATAATA
16503070 TTAATTGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 16 0.48
31 17 0.52
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (31 bp):
ATATAATAAATATTTAAATTATAATTCTATT
Found at i:16503207 original size:19 final size:18
Alignment explanation
Indices: 16503183--16503220 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
16503173 AAATAAAATT
16503183 ATAATAA-TATATACTTATA
1 ATAATAAGT-TATAC-TATA
16503202 ATAATAAGTTATACTATA
1 ATAATAAGTTATACTATA
16503220 A
1 A
16503221 CTTATTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 12 0.67
20 1 0.06
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (18 bp):
ATAATAAGTTATACTATA
Found at i:16503451 original size:29 final size:29
Alignment explanation
Indices: 16503412--16503481 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
16503402 TATATTAATT
** *
16503412 TTAAATATTAAATCTAA-TTTATTTATATAA
1 TTAAA-ATTAAATAAAATTTTACTTAT-TAA
*
16503442 TTAAAATTAATTAAAATTTTACTTATTAA
1 TTAAAATTAAATAAAATTTTACTTATTAA
16503471 TTAAAATTAAA
1 TTAAAATTAAA
16503482 ATCATTGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TTAAAATTAAATAAAATTTTACTTATTAA
Found at i:16503532 original size:17 final size:17
Alignment explanation
Indices: 16503490--16503542 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
16503480 AAATCATTGT
16503490 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
16503506 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
16503524 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
16503541 TA
1 TA
16503543 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:16503533 original size:22 final size:23
Alignment explanation
Indices: 16503492--16503547 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
16503482 ATCATTGTTA
16503492 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
16503513 TAATTATAATATATAAT-TAATT
1 TAATTATAATATATAATCTAATT
* *
16503535 AAAATATAATATA
1 TAATTATAATATA
16503548 AATATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:16503858 original size:23 final size:22
Alignment explanation
Indices: 16503829--16503913 Score: 68
Period size: 23 Copynumber: 3.7 Consensus size: 22
16503819 ATTAGTTTAA
16503829 ATATTAATATATAGATTAATAATT
1 ATATTAA-ATATA-ATTAATAATT
*
16503853 A-ATTAAAATAATTATTTAATAATT
1 ATATT-AAAT-A-TAATTAATAATT
*
16503877 ATTATTAAATATAATAAATAATT
1 A-TATTAAATATAATTAATAATT
16503900 AT-TTGAAAT-TAATT
1 ATATT-AAATATAATT
16503914 TACTTTAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
21 6 0.12
22 5 0.10
23 16 0.31
24 15 0.29
25 6 0.12
26 3 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
ATATTAAATATAATTAATAATT
Found at i:16504584 original size:180 final size:179
Alignment explanation
Indices: 16504034--16504635 Score: 494
Period size: 180 Copynumber: 3.4 Consensus size: 179
16504024 CTGGTTTAGC
** * * * * * * *
16504034 AAACAAATTTATTTTTTAAATCTATTAGTTATTAATTTTCAGAATATTATTACATTAATATTATT
1 AAACAAATTTATTTTTTAAATCTCCTACTTATCAATTTTTAAAATATTAATAAAGTAATATTATT
** * * * * * **
16504099 TTATTTTGAATAAACTTGTATGAAT-AGAAATAATTGTTTTATGAAAAAACAAAAGGT--T-AT-
66 TTATTACGAACAAGCTAGTATG-ATGAAAAACAATTGTTTTATGTCAAAA-AAAAGGTCATAATG
* *
16504159 A--AGAAATTG--AAATA-T-AAATAGTCATAACTATTTGAATTGGTTCGAT
129 ATTTGAAATAGATAAATATTCAAATAGTCATAACTATTTGAATT-GTTCGAT
* * * *
16504205 AAACAAATTTATTTTTTAAATCTCCTACTTATTAATTTTTGAAATATTAATAAATTCATATTATT
1 AAACAAATTTATTTTTTAAATCTCCTACTTATCAATTTTTAAAATATTAATAAAGTAATATTATT
* *
16504270 TTATTACGAATAAGCTAGTATGATGAAAAACAATTGTTTTATGTCAAAAAAAAGTTCATAATGAT
66 TTATTACGAACAAGCTAGTATGATGAAAAACAATTGTTTTATGTCAAAAAAAAGGTCATAATGAT
* * * * * *
16504335 TTGAAATAGATAAATGTTCAAATGGCCATAATTATTTTAATTGATTTGAT
131 TTGAAATAGATAAATATTCAAATAGTCATAACTATTTGAATTG-TTCGAT
*** * *
16504385 AAATTGATTTATGTTTTAAATCT-TTAACTTATCAATTTTTAAAATATTAATAAAGTAATATTAT
1 AAACAAATTTATTTTTTAAATCTCCT-ACTTATCAATTTTTAAAATATTAATAAAGTAATATTAT
** * ** ** *
16504449 TTT-TTTGGGACAAGCTTTTATGATTTAACACAATTGTTTTATGAT-AAAATAAAAGGTCATAAT
65 TTTATTACGAACAAGCTAGTATGATGAAAAACAATTGTTTTATG-TCAAAA-AAAAGGTCATAAT
* * * * *
16504512 GATTTTAGATAGATAATTATTCAAATAGTCATAACTATTGGAACTTGTTCAAT
128 GATTTGAAATAGATAAATATTCAAATAGTCATAACTATTTGAA-TTGTTCGAT
* * * * ** * * *
16504565 AAACAAATTTATTTTTTAAAATTTCTTGCTTATTAATTTTTTGAATGTTAATAAATTAGTATTAT
1 AAACAAATTTATTTTTT-AAATCTCCTACTTATCAATTTTTAAAATATTAATAAAGTAATATTAT
16504630 TTTATT
65 TTTATT
16504636 TTGAATAAGC
Statistics
Matches: 344, Mismatches: 68, Indels: 27
0.78 0.15 0.06
Matches are distributed among these distances:
170 8 0.02
171 94 0.27
172 1 0.00
173 2 0.01
174 1 0.00
176 6 0.02
178 4 0.01
179 38 0.11
180 144 0.42
181 42 0.12
182 4 0.01
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.44
Consensus pattern (179 bp):
AAACAAATTTATTTTTTAAATCTCCTACTTATCAATTTTTAAAATATTAATAAAGTAATATTATT
TTATTACGAACAAGCTAGTATGATGAAAAACAATTGTTTTATGTCAAAAAAAAGGTCATAATGAT
TTGAAATAGATAAATATTCAAATAGTCATAACTATTTGAATTGTTCGAT
Found at i:16505030 original size:28 final size:29
Alignment explanation
Indices: 16504965--16505044 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 29
16504955 AAATTAGTAA
* *
16504965 AAATAATAATTATACTTATTAGTTTACTAAT
1 AAATATTAATTATA-TTAATAGTTTAC-AAT
*
16504996 AATATATTAATTATATTAATATTTTA-AAT
1 AA-ATATTAATTATATTAATAGTTTACAAT
*
16505025 AAATATGT-ATAATATTAATA
1 AAATAT-TAATTATATTAATA
16505045 ACATTATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
28 15 0.35
29 6 0.14
31 11 0.26
32 11 0.26
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (29 bp):
AAATATTAATTATATTAATAGTTTACAAT
Found at i:16506416 original size:18 final size:17
Alignment explanation
Indices: 16506392--16506434 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
16506382 TAACCAGTTT
16506392 AAATAATTATGATTATTTC
1 AAATAATTAT--TTATTTC
16506411 -AATAATTATTTATTTC
1 AAATAATTATTTATTTC
16506427 AAATAATT
1 AAATAATT
16506435 GTGACCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.30
17 7 0.30
18 9 0.39
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (17 bp):
AAATAATTATTTATTTC
Found at i:16506919 original size:16 final size:17
Alignment explanation
Indices: 16506898--16506938 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
16506888 AAAAAATTAA
16506898 ATATTAATTTAGAT-TT
1 ATATTAATTTAGATATT
*
16506914 ATATTAATTTATATATT
1 ATATTAATTTAGATATT
16506931 -TATTAATT
1 ATATTAATT
16506939 ATGAATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 21 0.91
17 2 0.09
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (17 bp):
ATATTAATTTAGATATT
Found at i:16507128 original size:17 final size:18
Alignment explanation
Indices: 16507096--16507133 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
16507086 TATATTATTA
*
16507096 TTATTATATATAAT-AAT
1 TTATTATAAATAATAAAT
*
16507113 TTATTATAAATTATAAAT
1 TTATTATAAATAATAAAT
16507131 TTA
1 TTA
16507134 CATTAATAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATTATAAATAATAAAT
Found at i:16507197 original size:20 final size:21
Alignment explanation
Indices: 16507164--16507213 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
16507154 TAACTTTAAG
16507164 TTTTAATATCATATA-TAATA
1 TTTTAATATCATATAGTAATA
* *
16507184 TTTTATTATTATATAGTAATAA
1 TTTTAATATCATATAGTAAT-A
*
16507206 TATTAATA
1 TTTTAATA
16507214 ATTATATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 13 0.54
21 4 0.17
22 7 0.29
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTTAATATCATATAGTAATA
Found at i:16507223 original size:11 final size:11
Alignment explanation
Indices: 16507191--16507233 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
16507181 ATATTTTATT
*
16507191 ATTATATAGTA
1 ATTATATAATA
*
16507202 ATAATATTAATA
1 ATTATA-TAATA
16507214 ATTATATAATA
1 ATTATATAATA
16507225 ATTATATAA
1 ATTATATAA
16507234 ATTTATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (11 bp):
ATTATATAATA
Found at i:16507246 original size:16 final size:16
Alignment explanation
Indices: 16507220--16507258 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
16507210 AATAATTATA
*
16507220 TAATAATTATATAAAT
1 TAATTATTATATAAAT
*
16507236 TTATTATTATATAAAT
1 TAATTATTATATAAAT
16507252 TAATTAT
1 TAATTAT
16507259 ATTATTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATTATTATATAAAT
Found at i:16508157 original size:19 final size:20
Alignment explanation
Indices: 16508125--16508174 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
16508115 AATTAATTAT
*
16508125 TATAAATATATTATA-ATAA
1 TATAATTATATTATATATAA
*
16508144 TATAATTATTTTATATATAA
1 TATAATTATATTATATATAA
16508164 -ATAATTTATAT
1 TATAA-TTATAT
16508175 AATAATTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 17 0.65
20 9 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATAATTATATTATATATAA
Found at i:16508180 original size:12 final size:13
Alignment explanation
Indices: 16508157--16508186 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
16508147 AATTATTTTA
16508157 TATATAAATAATT
1 TATATAAATAATT
16508170 TATAT-AATAATT
1 TATATAAATAATT
16508182 TATAT
1 TATAT
16508187 GCTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATAAATAATT
Found at i:16508377 original size:3 final size:3
Alignment explanation
Indices: 16508316--16508366 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
16508306 ATATTAAAGT
16508316 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
16508364 ATA
1 ATA
16508367 GAATTAATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16508747 original size:14 final size:14
Alignment explanation
Indices: 16508728--16508759 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
16508718 ATTCATTTAT
*
16508728 AATATTATATTAAC
1 AATATTATATCAAC
16508742 AATATTATATCAAC
1 AATATTATATCAAC
16508756 AATA
1 AATA
16508760 ATTGATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATATTATATCAAC
Found at i:16509007 original size:25 final size:26
Alignment explanation
Indices: 16508979--16509039 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
16508969 TATTAACTTG
16508979 ACTATAATTTATT-ATAATAATTAAT
1 ACTATAATTTATTAATAATAATTAAT
*
16509004 ACTA-AA-TTATTAAATTATAATTAAT
1 ACTATAATTTATT-AATAATAATTAAT
16509029 A-TACTAATTTA
1 ACTA-TAATTTA
16509040 AATAACTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 5 0.17
24 4 0.13
25 16 0.53
26 2 0.07
27 3 0.10
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (26 bp):
ACTATAATTTATTAATAATAATTAAT
Found at i:16509210 original size:19 final size:20
Alignment explanation
Indices: 16509188--16509226 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
16509178 AAAAAGCAAC
* *
16509188 AATTAACTAATTAT-ATTAT
1 AATTAAATAAATATAATTAT
16509207 AATTAAATAAATATAATTAT
1 AATTAAATAAATATAATTAT
16509227 TTATTAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTAAATAAATATAATTAT
Found at i:16509926 original size:18 final size:18
Alignment explanation
Indices: 16509903--16509958 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
16509893 ATTAAATAAA
16509903 TATTTA-AATAATAACTAT
1 TATTTACAATAATAA-TAT
*
16509921 TATTTATAA-ATATAATAT
1 TATTTACAATA-ATAATAT
16509939 TAATTTACAATAATAA-AT
1 T-ATTTACAATAATAATAT
16509957 TA
1 TA
16509959 CTAATAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
17 1 0.03
18 14 0.42
19 17 0.52
20 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
TATTTACAATAATAATAT
Found at i:16509944 original size:19 final size:20
Alignment explanation
Indices: 16509907--16509954 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
16509897 AATAAATATT
16509907 TAAATAATAACTATTATTTA
1 TAAATAATAACTATTATTTA
16509927 TAAAT-ATAA-TATTAATTTA
1 TAAATAATAACTATT-ATTTA
*
16509946 -CAATAATAA
1 TAAATAATAA
16509955 ATTACTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 7 0.28
19 13 0.52
20 5 0.20
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAATAATAACTATTATTTA
Found at i:16509971 original size:19 final size:19
Alignment explanation
Indices: 16509949--16509992 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
16509939 TAATTTACAA
16509949 TAATAAAT-TACTAATAAAT
1 TAATAAATATACT-ATAAAT
**
16509968 TAATATTTATACTATAAAT
1 TAATAAATATACTATAAAT
16509987 TAATAA
1 TAATAA
16509993 CAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TAATAAATATACTATAAAT
Found at i:16510091 original size:10 final size:10
Alignment explanation
Indices: 16510072--16510110 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
16510062 TAAGTTATTC
16510072 ATTA-TAATA
1 ATTATTAATA
16510081 ATTATTAATA
1 ATTATTAATA
16510091 ATTAATTAATA
1 ATT-ATTAATA
*
16510102 ATAATTAAT
1 ATTATTAAT
16510111 TAACCATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 4 0.15
10 14 0.52
11 9 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
ATTATTAATA
Found at i:16510113 original size:14 final size:14
Alignment explanation
Indices: 16510025--16510113 Score: 67
Period size: 14 Copynumber: 6.4 Consensus size: 14
16510015 TTTATTAAAC
*
16510025 ATTAATAAAAATTA
1 ATTAATAATAATTA
* * *
16510039 ACTTATTAAAAAAT-
1 A-TTAATAATAATTA
16510053 ATTATATAATAAGTT-
1 ATTA-ATAATAA-TTA
* *
16510068 ATTCATTATAA-TA
1 ATTAATAATAATTA
*
16510081 ATTATTAATAATTA
1 ATTAATAATAATTA
16510095 ATTAATAATAATTA
1 ATTAATAATAATTA
16510109 ATTAA
1 ATTAA
16510114 CCATCAACTT
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
12 1 0.02
13 11 0.19
14 33 0.56
15 14 0.24
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (14 bp):
ATTAATAATAATTA
Found at i:16511079 original size:14 final size:14
Alignment explanation
Indices: 16511062--16511088 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16511052 ACATTAGTTA
16511062 TTATTAAATATAAG
1 TTATTAAATATAAG
16511076 TTATTAAATATAA
1 TTATTAAATATAA
16511089 ACTAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
TTATTAAATATAAG
Found at i:16511174 original size:9 final size:9
Alignment explanation
Indices: 16511162--16511211 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
16511152 TTAAATAATA
16511162 ATAATATTT
1 ATAATATTT
16511171 ATAATATTT
1 ATAATATTT
* *
16511180 AAAATAATT
1 ATAATATTT
* *
16511189 ATAATCTCT
1 ATAATATTT
16511198 -TAATATTT
1 ATAATATTT
16511206 ATAATA
1 ATAATA
16511212 AGATTATAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
8 6 0.19
9 26 0.81
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (9 bp):
ATAATATTT
Found at i:16511182 original size:26 final size:25
Alignment explanation
Indices: 16511152--16511212 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
16511142 GAATAGATAA
*
16511152 TTAAATAATAATAATATTTATAATAT
1 TTAAATAATAATAATATCT-TAATAT
* *
16511178 TTAAAATAATTATAATCTCTTAATAT
1 TT-AAATAATAATAATATCTTAATAT
16511204 TTATAATAA
1 TTA-AATAA
16511213 GATTATAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.03
26 15 0.50
27 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAAATAATAATAATATCTTAATAT
Found at i:16511528 original size:7 final size:7
Alignment explanation
Indices: 16511492--16511586 Score: 60
Period size: 7 Copynumber: 13.9 Consensus size: 7
16511482 AAATTGGATA
*
16511492 TTAATAC
1 TTAATAT
16511499 TTAAT-T
1 TTAATAT
16511505 ATTAATAT
1 -TTAATAT
16511513 TT-ATA-
1 TTAATAT
16511518 -TAATAT
1 TTAATAT
16511524 TTAATA-
1 TTAATAT
*
16511530 AT-AT-T
1 TTAATAT
16511535 TATAATAT
1 T-TAATAT
*
16511543 TATATTAT
1 T-TAATAT
16511551 TATATATAT
1 T-TA-ATAT
*
16511560 TGAATAT
1 TTAATAT
16511567 TTAATAT
1 TTAATAT
16511574 TTAATAT
1 TTAATAT
16511581 TTAATA
1 TTAATA
16511587 ATATGTACAC
Statistics
Matches: 71, Mismatches: 7, Indels: 20
0.72 0.07 0.20
Matches are distributed among these distances:
4 1 0.01
5 5 0.07
6 5 0.07
7 42 0.59
8 14 0.20
9 4 0.06
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (7 bp):
TTAATAT
Found at i:16511698 original size:21 final size:21
Alignment explanation
Indices: 16511672--16511728 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
16511662 TTTAATTAAT
* *
16511672 ATTATATTTATTATATTTATA
1 ATTATATTTATTATATATACA
* * *
16511693 ATTATATATAATAAATATACA
1 ATTATATTTATTATATATACA
*
16511714 ATTATATTAATTATA
1 ATTATATTTATTATA
16511729 ATATTTATAG
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTATATTTATTATATATACA
Found at i:16512210 original size:16 final size:16
Alignment explanation
Indices: 16512171--16512204 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
16512161 GTTATTCATG
*
16512171 ATATTATATTTAATTA
1 ATATTATATTTAAATA
16512187 ATATTATATTTAAATA
1 ATATTATATTTAAATA
16512203 AT
1 AT
16512205 TGTATAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATTATATTTAAATA
Found at i:16512287 original size:14 final size:14
Alignment explanation
Indices: 16512253--16512293 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
16512243 TTAATTAAAC
16512253 TAATAA-AA-TATT
1 TAATAATAATTATT
16512265 T-ATAATAATTATT
1 TAATAATAATTATT
*
16512278 TAATATTAATTATT
1 TAATAATAATTATT
16512292 TA
1 TA
16512294 TAAATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 4 0.16
12 3 0.12
13 5 0.20
14 13 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATAATAATTATT
Found at i:16514343 original size:181 final size:176
Alignment explanation
Indices: 16513780--16515320 Score: 991
Period size: 181 Copynumber: 8.7 Consensus size: 176
16513770 TAGGAGTTTA
* * * * ** ** * *
16513780 AAAAAATAAATTTGTTTATCGAGCAAATTCTGATAGTTACAACTATTTGAACAATTATCTATTTA
1 AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTC
* * * * *
16513845 AAATCATTATGA---TGT-TTTGTCATAAAATAATTGTTTC-AGTTCA-ACAAGCTTATTCAAAA
66 AAATCGTTATAACCTTTTGTTTGTCATAAAACAATTATTTCTA-TTCATACAAGCTTATTCAAAA
** * *
16513904 TAAAATAATTCTAATTTATTAATATTCCAAAAATTAATAAGTGATTT
130 TAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGAGATTT
* * * * * * ** * * *
16513951 AAAAAGTGAATCTATTTGCCAAATTAGTTCAAATAATTATGA-TAATTTCAACAATTATCTATTT
1 AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAGTTATGACT-ATTTGAACAATTATATATTT
* * * * * * **
16514015 CAAATCGTTATCACCTTTTGTTTGGTCATATAACAACTGTTTTTTTA-TCATACATGATTATTTG
65 CAAATCGTTATAACCTTTTGTTT-GTCATAAAACAA-T-TATTTCTATTCATACAAGCTTATTCA
*
16514079 AAATAAAATAATAATAATTTATTAATCTTTCAAAAATTAATAAGAGATTT
127 AAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGAGATTT
* * * *
16514129 AAAAAATAAATTTGTTTACTGAACCAGTTCAAATAGTTATGACTATTTAAACAATTCTATACTTC
1 AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTC
* * * *
16514194 ATATCATTATAACCTTTTGTTATGTCATAAAATAATTATTTCTATTCGTACAAGCTTATTCAAAA
66 AAATCGTTATAACCTTTTGTT-TGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAAA
* * * * *
16514259 TAAAACAATACTAATATAATAATA-TTCTAAAAATTAATAACTAAGGGATTT
130 TAAAATAATAATAATTTATTAATATTTC-AAAAA-T--TAA-TAAGAGATTT
* * * ** * *
16514310 CAAAAATAAATTTGTTTGCCGAACCAATTCAAATAGTTAAAACTATATGAACAATTATCTATTTC
1 AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTC
* *
16514375 AAATCGTTATGACCTTTTGTCTTGTCATAAAACAA--ATTTCTCAATTCATACTAGCTTATTCAA
66 AAATCGTTATAACCTTTTGT-TTGTCATAAAACAATTATTTCT--ATTCATACAAGCTTATTCAA
16514438 AATAAAATAA-AATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTT
128 AATAAAATAATAAT-AATTTATTAATATTTC-AAAAAT--TAA-TAAGAGATTT
* * *
16514491 AAAAAATAATTTTGTTTACCTAACC-GTTCAAAATA-TTAT-ACTATTTGAACAATTATATATTC
1 AAAAAATAAATTTGTTTACCGAACCAGTTC-AAATAGTTATGACTATTTGAACAATTATATATTT
* ** ** * * * * * * *
16514553 CAAATCGTTATTATTTTTTGTTTTGTTGTACAACAAATGTTTTTGTTCATATAAGTTTATTCAAA
65 CAAATCGTTATAACCTTTTG-TTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAA
* * * * *
16514618 ATAAAGTAATACTAATCTATTAATATTTCAAAAATTAAAAAGTGATTT
129 ATAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGAGATTT
* * * * * * * * * *
16514666 AGACAATAAATCTATGTATCAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTATTTATTTC
1 AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTC
* * * ** * * *** *
16514731 AAATCATTATGACTTTTTGTTTTGTTGTAAAACAATTGTTTTTATTCATACAAGCTTATTTGCAT
66 AAATCGTTATAACCTTTTG-TTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAAA
* ** * *
16514796 TAAAATAATACTAATTTATTAATATTTTGACAATTAGT-A-AG---T
130 TAAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGAGATTT
* * * * * * * * *
16514838 AAAAAATTTTTAAAATATGTTTACC-ACACTAGATCAAATAATCATGACAATTTGAATAACTATC
1 AAAAAA----T-AAATTTGTTTACCGA-ACCAGTTCAAATAGTTATGACTATTTGAACAATTATA
* * * * * *
16514902 TATTTCAAATCATTATGACCTTTTGATTTGTCATAAAAGAGTTGTTTC-AGTTCATATAAGCTTA
60 TATTTCAAATCGTTATAACCTTTTG-TTTGTCATAAAACAATTATTTCTA-TTCATACAAGCTTA
* * * *
16514966 TTCAAAATAAAATAATACTAATTTATTCATAATCCAAAAATTAATAATAAAGAGATTT
123 TTCAAAATAAAATAATAATAATTTATTAATATTTCAAAAA-T--TAAT-AAGAGATTT
* * * * * * * * * * * * * ** *
16515024 AAAAAATGACTTTGTTTACTGAACAAATTTAAATAATTAGGACTGTGTCAATATTTATCGATTTG
1 AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTC
* * * * * *
16515089 AAATAGCTATAACCTTTTGTTTTGTAATAAAAGAATTTTTTCTGTTCAT-CTAAGCTTATTTC-A
66 AAATCGTTATAACCTTTTG-TTTGTCATAAAACAATTATTTCTATTCATAC-AAGCTTA-TTCAA
16515152 AATAAAATAATACA-AATTTATTAATA-TT-AAGACAATTAATAAGTAAAAGATTT
128 AATAAAATAATA-ATAATTTATTAATATTTCAA-A-AATTAATAAG----AGATTT
* * * * ** * *
16515205 -AAAAATAAATCTGTTTACCAAACAAGTTCTAATCA-TTATGGTTATTTGAGCAATTATTTATTT
1 AAAAAATAAATTTGTTTACCGAACCAGTTCAAAT-AGTTATGACTATTTGAACAATTATATATTT
* * ** * *
16515268 C-AACCTGTTATGATTTTTTATTTTGTCATAAAACAATTATTTCTATTTATACA
65 CAAATC-GTTATAACCTTTT-GTTTGTCATAAAACAATTATTTCTATTCATACA
16515321 TTTTAAATAG
Statistics
Matches: 1064, Mismatches: 244, Indels: 115
0.75 0.17 0.08
Matches are distributed among these distances:
170 1 0.00
171 55 0.05
172 5 0.00
174 2 0.00
175 33 0.03
176 34 0.03
177 274 0.26
178 147 0.14
179 101 0.09
180 96 0.09
181 292 0.27
182 15 0.01
183 2 0.00
186 7 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (176 bp):
AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTC
AAATCGTTATAACCTTTTGTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAAAT
AAAATAATAATAATTTATTAATATTTCAAAAATTAATAAGAGATTT
Found at i:16514706 original size:537 final size:535
Alignment explanation
Indices: 16513781--16515042 Score: 1281
Period size: 537 Copynumber: 2.4 Consensus size: 535
16513771 AGGAGTTTAA
* * ** * *
16513781 AAAAATAAATTTGTTTATCGAGCAAATTCTGATAGTTACAACTATTTGAACAATTATCTATTTAA
1 AAAAATAAATTTGTTTACCGAACAAATTCAAATAGTTAAAACTATTTGAACAATTATCTATTTCA
* * *
16513846 AATCATTATGA---TGT-TTTGTCATAAAATAATTGTTTCAGTTCA-ACAAGCTTATTCAAAATA
66 AATCATTATGACCTTTTGTTTGTCATAAAAAAATTGTTTCAGTTCATACTAGCTTATTCAAAATA
** * * * * * *
16513906 AAATAATTCTAATTTATTAATATTCCAAAAAT--TAATAAGTGATTTAAAAAGTGAATCTATTTG
131 AAATAA-AATAATTTATTAATATTCAAAAAATAATAATAAGAGATTTAAAAAAT-AATTTGTTTA
* * *
16513969 CCAAATTAGTTCAAATAATTATGATAATTTCAACAATTATCTATTTCAAATCGTTATCACCTTTT
194 CCAAATCAGTTCAAATAATTATGATAATTTCAACAATTATATATTCCAAATCGTTATCACCTTTT
* * * * ** *
16514034 GTTTGGTCATATAACAACTGTTTTTTTATCATACATGATTATTTGAAATAAAATAATAATAATTT
259 GTTTGGTCATACAACAAATGTTTTTGTATCATACAAGATTATTCAAAATAAAATAATAATAATCT
* * * *
16514099 ATTAATCTTTCAAAAATTAATAAGAGATTTAAAAAATAAATTTGTTTACTGAACCAGTTCAAATA
324 ATTAATATTTCAAAAATTAAAAAGAGATTTAAAAAATAAATTTGTATACTAAACCAGTTCAAATA
* * *
16514164 GTTATGACTATTTAAACAATTCTATACTTCATATCATTATAACCTTTTGTTATGTCATAAAATAA
389 GTTATGACTATTTAAACAATTATATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAA
*
16514229 TTATTTCTATTCGTACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCTAAAAATT
454 TTATTTCTATTCATACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCTAAAAATT
***
16514294 AATAACTAAGGGATTTC
519 AATAACTAAAAAATTTC
* * *
16514311 AAAAATAAATTTGTTTGCCGAACCAATTCAAATAGTTAAAACTATATGAACAATTATCTATTTCA
1 AAAAATAAATTTGTTTACCGAACAAATTCAAATAGTTAAAACTATTTGAACAATTATCTATTTCA
* * *
16514376 AATCGTTATGACCTTTTGTCTTGTCATAAAACAAATT-TCTCAATTCATACTAGCTTATTCAAAA
66 AATCATTATGACCTTTTGT-TTGTCATAAAA-AAATTGTTTCAGTTCATACTAGCTTATTCAAAA
16514440 TAAAATAAAATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAATTTTG
129 TAAAATAAAAT-AATTTATTAATA-TTCAAAAAATAATAA-TAAGAGATTTAAAAAATAA-TTTG
* * * *
16514505 TTTACCTAA-CCGTTCAAA-ATATTAT-ACT-ATTTGAACAATTATATATTCCAAATCGTTATTA
190 TTTACCAAATCAGTTCAAATA-ATTATGA-TAATTTCAACAATTATATATTCCAAATCGTTATCA
** * ** * * * *
16514566 TTTTTTGTTTTGTTGTACAACAAATGTTTTTGT-TCATATAAGTTTATTCAAAATAAAGTAATAC
253 CCTTTTGTTTGGTCATACAACAAATGTTTTTGTATCATACAAGATTATTCAAAATAAAATAATAA
* * * *
16514630 TAATCTATTAATATTTCAAAAATTAAAAAGTGATTTAGACAATAAATCTATGTAT-C-AAACTAG
318 TAATCTATTAATATTTCAAAAATTAAAAAGAGATTTAAAAAATAAAT-T-TGTATACTAAACCAG
* * * * * * * **
16514693 TTCAAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCATTATGACTTTTTGTTTTGTTG
381 TTCAAATAGTTATGACTATTTAAACAATTATATACTTCAAATCATTATAACCTTTTGTTATGTCA
* * *** * * * * *
16514758 TAAAACAATTGTTTTTATTCATACAAGCTTATTTGCATTAAAATAATACTAATTTATTAATATTT
446 TAAAACAATTATTTCTATTCATACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTC
* * * * *
16514823 TGACAATTAGTAAGTAAAAAATTTT
511 TAAAAATTAATAACTAAAAAATTTC
* * * * ** * * *
16514848 TAAAAT--A--TGTTTACC-ACACTAGA-TCAAATAATCATGACAATTTGAATAACTATCTATTT
1 AAAAATAAATTTGTTTACCGA-AC-AAATTCAAATAGTTAAAACTATTTGAACAATTATCTATTT
* *
16514907 CAAATCATTATGACCTTTTGATTTGTCATAAAAGAGTTGTTTCAGTTCATA-TAAGCTTATTCAA
64 CAAATCATTATGACCTTTTG-TTTGTCATAAAAAAATTGTTTCAGTTCATACT-AGCTTATTCAA
* * * * *
16514971 AATAAAATAATACTAATTTATTCATAATCCAAAAATTAATAATAAAGAGATTTAAAAAATGACTT
127 AATAAAATAA-AATAATTTATTAAT-ATTCAAAAAATAATAAT-AAGAGATTTAAAAAAT-AATT
16515036 TGTTTAC
188 TGTTTAC
16515043 TGAACAAATT
Statistics
Matches: 599, Mismatches: 107, Indels: 49
0.79 0.14 0.06
Matches are distributed among these distances:
530 66 0.11
532 6 0.01
533 148 0.25
534 7 0.01
535 21 0.04
536 39 0.07
537 208 0.35
538 58 0.10
539 22 0.04
540 24 0.04
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (535 bp):
AAAAATAAATTTGTTTACCGAACAAATTCAAATAGTTAAAACTATTTGAACAATTATCTATTTCA
AATCATTATGACCTTTTGTTTGTCATAAAAAAATTGTTTCAGTTCATACTAGCTTATTCAAAATA
AAATAAAATAATTTATTAATATTCAAAAAATAATAATAAGAGATTTAAAAAATAATTTGTTTACC
AAATCAGTTCAAATAATTATGATAATTTCAACAATTATATATTCCAAATCGTTATCACCTTTTGT
TTGGTCATACAACAAATGTTTTTGTATCATACAAGATTATTCAAAATAAAATAATAATAATCTAT
TAATATTTCAAAAATTAAAAAGAGATTTAAAAAATAAATTTGTATACTAAACCAGTTCAAATAGT
TATGACTATTTAAACAATTATATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATT
ATTTCTATTCATACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCTAAAAATTAA
TAACTAAAAAATTTC
Found at i:16515607 original size:24 final size:26
Alignment explanation
Indices: 16515568--16515624 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 26
16515558 ATTATAAAAT
16515568 TAATTAATTATAATAAC-A-TGAATA
1 TAATTAATTATAATAACTAGTGAATA
*
16515592 TATTTAATT-TATATAACTAGTGAATA
1 TAATTAATTATA-ATAACTAGTGAATA
16515618 TAATTAA
1 TAATTAA
16515625 CTAATATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 13 0.46
25 1 0.04
26 12 0.43
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (26 bp):
TAATTAATTATAATAACTAGTGAATA
Found at i:16515646 original size:17 final size:17
Alignment explanation
Indices: 16515626--16515660 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
16515616 TATAATTAAC
*
16515626 TAATATTATATTATATA
1 TAATATTATAATATATA
16515643 TAATATTATAATATATA
1 TAATATTATAATATATA
16515660 T
1 T
16515661 TTGATTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATATTATAATATATA
Found at i:16515800 original size:15 final size:15
Alignment explanation
Indices: 16515782--16515856 Score: 64
Period size: 15 Copynumber: 4.9 Consensus size: 15
16515772 TTGTACTTTA
16515782 TATATAATTATAATG
1 TATATAATTATAATG
*
16515797 TATATAATTATAATT
1 TATATAATTATAATG
* *
16515812 TATATACAAGTAT-TTG
1 TATAT--AATTATAATG
*
16515828 -ATTAGTAATTATAATT
1 TA-TA-TAATTATAATG
16515844 TATATAATTATAA
1 TATATAATTATAA
16515857 ATTATAATCG
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
15 34 0.72
16 6 0.13
17 7 0.15
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (15 bp):
TATATAATTATAATG
Found at i:16516220 original size:31 final size:31
Alignment explanation
Indices: 16516152--16516220 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 31
16516142 TTAATGATAA
*
16516152 ATATAATAAATATTTAAATTATATTTCTATT
1 ATATAATAAATATTTAAATTATAATTCTATT
*
16516183 AT-TAATAAATTATTTATATTA-AATTCTATT
1 ATATAATAAA-TATTTAAATTATAATTCTATT
16516213 ATATAATA
1 ATATAATA
16516221 TTACTTGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 17 0.50
31 17 0.50
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (31 bp):
ATATAATAAATATTTAAATTATAATTCTATT
Found at i:16516358 original size:19 final size:18
Alignment explanation
Indices: 16516331--16516371 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
16516321 TATAAATAAA
16516331 ACTATAATAAT-A--TAT
1 ACTATAATAATAAGTTAT
16516346 ACTTATAATAATAAGTTAT
1 AC-TATAATAATAAGTTAT
16516365 ACTATAA
1 ACTATAA
16516372 CTTATTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 2 0.09
16 9 0.41
17 1 0.05
18 5 0.23
19 5 0.23
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.39
Consensus pattern (18 bp):
ACTATAATAATAAGTTAT
Found at i:16516684 original size:17 final size:17
Alignment explanation
Indices: 16516642--16516694 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
16516632 AAATAATTGT
16516642 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
16516658 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
16516676 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
16516693 TA
1 TA
16516695 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:16516685 original size:22 final size:23
Alignment explanation
Indices: 16516644--16516699 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
16516634 ATAATTGTTA
16516644 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
16516665 TAATTATAATATATAAT-TAATT
1 TAATTATAATATATAATCTAATT
* *
16516687 AAAATATAATATA
1 TAATTATAATATA
16516700 AATATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:16519652 original size:9 final size:9
Alignment explanation
Indices: 16519638--16519664 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
16519628 TTACTAATAA
16519638 TATATTAAT
1 TATATTAAT
16519647 TATATTAAT
1 TATATTAAT
16519656 TATATTAAT
1 TATATTAAT
16519665 ATTTTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATATTAAT
Found at i:16519687 original size:9 final size:9
Alignment explanation
Indices: 16519675--16519703 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
16519665 ATTTTAAATA
16519675 AATATGTAT
1 AATATGTAT
16519684 AATATGTAT
1 AATATGTAT
16519693 AATAT-TAT
1 AATATGTAT
16519701 AAT
1 AAT
16519704 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (9 bp):
AATATGTAT
Found at i:16521670 original size:19 final size:19
Alignment explanation
Indices: 16521646--16521697 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
16521636 ATTTATAATT
16521646 ATTTATTAATTACGAATAA
1 ATTTATTAATTACGAATAA
* **
16521665 ATTTATTAGATTGCTTATAA
1 ATTTATTA-ATTACGAATAA
16521685 ATTTATATAATTA
1 ATTTAT-TAATTA
16521698 TGTAATATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 8 0.30
20 17 0.63
21 2 0.07
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (19 bp):
ATTTATTAATTACGAATAA
Found at i:16521936 original size:41 final size:43
Alignment explanation
Indices: 16521891--16521981 Score: 120
Period size: 41 Copynumber: 2.2 Consensus size: 43
16521881 TTAAATATCA
16521891 TATATAATATTTTATTATTATAT-AA-TAATAATATTAATAAT
1 TATATAATATTTTATTATTATATAAATTAATAATATTAATAAT
* *
16521932 TATATAA-A-TTTATTATTATATAAATTAATTATATTATTAAT
1 TATATAATATTTTATTATTATATAAATTAATAATATTAATAAT
*
16521973 T-TAAAATAT
1 TATATAATAT
16521982 ACTAATTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
39 13 0.30
40 7 0.16
41 23 0.53
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (43 bp):
TATATAATATTTTATTATTATATAAATTAATAATATTAATAAT
Found at i:16521951 original size:16 final size:16
Alignment explanation
Indices: 16521918--16521963 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
16521908 TTATATAATA
*
16521918 ATAATATTAATAATTAT
1 ATAA-ATTAATTATTAT
*
16521935 ATAAATTTATTATTAT
1 ATAAATTAATTATTAT
16521951 ATAAATTAATTAT
1 ATAAATTAATTAT
16521964 ATTATTAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 22 0.85
17 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATAAATTAATTATTAT
Found at i:16522768 original size:15 final size:15
Alignment explanation
Indices: 16522748--16522780 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16522738 AATGTTATAA
*
16522748 TATATAAAATAATTT
1 TATATAAAATAAATT
16522763 TATATAAAATAAATT
1 TATATAAAATAAATT
16522778 TAT
1 TAT
16522781 TTTATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATAAAATAAATT
Found at i:16522774 original size:20 final size:20
Alignment explanation
Indices: 16522751--16522788 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
16522741 GTTATAATAT
16522751 ATAAAATAATTTTATATAAA
1 ATAAAATAATTTTATATAAA
* *
16522771 ATAAATTTATTTTATATA
1 ATAAAATAATTTTATATA
16522789 TTTTTAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAAATAATTTTATATAAA
Found at i:16522816 original size:14 final size:14
Alignment explanation
Indices: 16522793--16522842 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
16522783 TATATATTTT
16522793 TAAT-TAATTATTA
1 TAATATAATTATTA
*
16522806 TAA-ATATATTATAA
1 TAATATA-ATTATTA
*
16522820 TAATATAATTATTT
1 TAATATAATTATTA
16522834 TATATATAA
1 TA-ATATAA
16522843 ATAATTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.17
14 16 0.53
15 9 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATAATTATTA
Found at i:16522826 original size:19 final size:19
Alignment explanation
Indices: 16522804--16522859 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
16522794 AATTAATTAT
16522804 TATAAATATATTATAATAA
1 TATAAATATATTATAATAA
* *
16522823 TATAATTATTTTATATATAA
1 TATAAATATATTATA-ATAA
*
16522843 -AT-AATTTA-TATAATAA
1 TATAAATATATTATAATAA
16522859 T
1 T
16522860 TTATATTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 3 0.10
19 15 0.50
20 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TATAAATATATTATAATAA
Found at i:16522842 original size:15 final size:15
Alignment explanation
Indices: 16522822--16522860 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16522812 TATTATAATA
*
16522822 ATATAATTATTTTAT
1 ATATAATTAATTTAT
*
16522837 ATATAAATAATTTAT
1 ATATAATTAATTTAT
16522852 ATAATAATT
1 AT-ATAATT
16522861 TATATTGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTAATTTAT
Found at i:16522859 original size:12 final size:13
Alignment explanation
Indices: 16522836--16522865 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
16522826 AATTATTTTA
16522836 TATATAAATAATT
1 TATATAAATAATT
16522849 TATAT-AATAATT
1 TATATAAATAATT
16522861 TATAT
1 TATAT
16522866 TGTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATAAATAATT
Found at i:16523007 original size:3 final size:3
Alignment explanation
Indices: 16522999--16523038 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
16522989 ATAAAGTATA
*
16522999 AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
16523039 TTATTTGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:16523070 original size:17 final size:16
Alignment explanation
Indices: 16523048--16523103 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
16523038 TTTATTTGAT
16523048 AATTTATATATATTATA
1 AATTTATATATA-TATA
*
16523065 AATTTATATTTATAT-
1 AATTTATATATATATA
*
16523080 AA-TTATAAATAATATA
1 AATTTATATAT-ATATA
16523096 TAATTTAT
1 -AATTTAT
16523104 TAATTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 3 0.09
17 13 0.41
18 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTATATATATATA
Found at i:16523075 original size:31 final size:32
Alignment explanation
Indices: 16523034--16523103 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
16523024 ATAGTAATTA
* * * *
16523034 ATAATTTAT-TTGATA-ATTTATATATATTAT
1 ATAATTTATATTTATATAATTATAAATAATAT
16523064 A-AATTTATATTTATATAATTATAAATAATAT
1 ATAATTTATATTTATATAATTATAAATAATAT
16523095 ATAATTTAT
1 ATAATTTAT
16523104 TAATTTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.21
30 6 0.18
31 13 0.39
32 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (32 bp):
ATAATTTATATTTATATAATTATAAATAATAT
Found at i:16523095 original size:23 final size:23
Alignment explanation
Indices: 16523049--16523096 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
16523039 TTATTTGATA
*
16523049 ATTTATATATATTATAAATTTAT
1 ATTTATATATATTATAAATATAT
16523072 ATTTATATA-ATTATAAATAATAT
1 ATTTATATATATTATAAAT-ATAT
16523095 AT
1 AT
16523097 AATTTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTATATATATTATAAATATAT
Found at i:16523097 original size:25 final size:23
Alignment explanation
Indices: 16523041--16523108 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 23
16523031 TTAATAATTT
16523041 ATTTGATAATTTATATATATTATAA
1 ATTT-ATAATTTATATA-ATTATAA
16523066 ATTTAT-ATTTATATAATTATAA
1 ATTTATAATTTATATAATTATAA
16523088 ATAATATATAATTTAT-TAATT
1 AT--T-TATAATTTATATAATT
16523109 TTTATTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.23
23 9 0.23
24 3 0.08
25 12 0.31
26 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
ATTTATAATTTATATAATTATAA
Found at i:16523652 original size:25 final size:26
Alignment explanation
Indices: 16523624--16523684 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
16523614 TATTAACTTG
16523624 ACTATAATTTATT-ATAATAATTAAT
1 ACTATAATTTATTAATAATAATTAAT
*
16523649 ACTA-AA-TTATTAAATTATAATTAAT
1 ACTATAATTTATT-AATAATAATTAAT
16523674 A-TACTAATTTA
1 ACTA-TAATTTA
16523685 AATAACTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 5 0.17
24 4 0.13
25 16 0.53
26 2 0.07
27 3 0.10
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (26 bp):
ACTATAATTTATTAATAATAATTAAT
Found at i:16523855 original size:19 final size:20
Alignment explanation
Indices: 16523833--16523871 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
16523823 AAAAAGCAAC
* *
16523833 AATTAACTAATTAT-ATTAT
1 AATTAAATAAATATAATTAT
16523852 AATTAAATAAATATAATTAT
1 AATTAAATAAATATAATTAT
16523872 TTATTAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTAAATAAATATAATTAT
Found at i:16524575 original size:18 final size:18
Alignment explanation
Indices: 16524552--16524607 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
16524542 ATTAAATAAA
16524552 TATTTA-AATAATAACTAT
1 TATTTACAATAATAA-TAT
*
16524570 TATTTATAA-ATATAATAT
1 TATTTACAATA-ATAATAT
16524588 TAATTTACAATAATAA-AT
1 T-ATTTACAATAATAATAT
16524606 TA
1 TA
16524608 CTAATAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
17 1 0.03
18 14 0.42
19 17 0.52
20 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
TATTTACAATAATAATAT
Found at i:16524593 original size:19 final size:20
Alignment explanation
Indices: 16524556--16524603 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
16524546 AATAAATATT
16524556 TAAATAATAACTATTATTTA
1 TAAATAATAACTATTATTTA
16524576 TAAAT-ATAA-TATTAATTTA
1 TAAATAATAACTATT-ATTTA
*
16524595 -CAATAATAA
1 TAAATAATAA
16524604 ATTACTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 7 0.28
19 13 0.52
20 5 0.20
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAATAATAACTATTATTTA
Found at i:16524620 original size:19 final size:19
Alignment explanation
Indices: 16524598--16524641 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
16524588 TAATTTACAA
16524598 TAATAAAT-TACTAATAAAT
1 TAATAAATATACT-ATAAAT
**
16524617 TAATATTTATACTATAAAT
1 TAATAAATATACTATAAAT
16524636 TAATAA
1 TAATAA
16524642 CAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TAATAAATATACTATAAAT
Found at i:16525454 original size:24 final size:25
Alignment explanation
Indices: 16525426--16525475 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
16525416 AAATGATGAC
* *
16525426 AATTTATAATTA-ATATTTATTATA
1 AATTTAAAATTAGATATTTATAATA
*
16525450 AATTTAAAATTAGTTATTTATAATA
1 AATTTAAAATTAGATATTTATAATA
16525475 A
1 A
16525476 TTATATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
AATTTAAAATTAGATATTTATAATA
Found at i:16525573 original size:28 final size:29
Alignment explanation
Indices: 16525533--16525590 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
16525523 ATTAATAAGT
16525533 AATATAAATAAAAT-GTTAATAAATTAACA
1 AATATAAATAAAATAGTTAAT-AATTAACA
* *
16525562 AATATTAA-AAAATATTTAATAATTAACA
1 AATATAAATAAAATAGTTAATAATTAACA
16525590 A
1 A
16525591 CTTAATTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (29 bp):
AATATAAATAAAATAGTTAATAATTAACA
Found at i:16525810 original size:9 final size:9
Alignment explanation
Indices: 16525798--16525847 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
16525788 TTAAATAATA
16525798 ATAATATTT
1 ATAATATTT
16525807 ATAATATTT
1 ATAATATTT
* *
16525816 AAAATAATT
1 ATAATATTT
*
16525825 ATAATATCT
1 ATAATATTT
*
16525834 -GAATATTT
1 ATAATATTT
16525842 ATAATA
1 ATAATA
16525848 AGATTATAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
8 6 0.19
9 26 0.81
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (9 bp):
ATAATATTT
Found at i:16525818 original size:26 final size:25
Alignment explanation
Indices: 16525788--16525848 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
16525778 AAATAGATAA
* *
16525788 TTAAATAATAATAATATTTATAATAT
1 TTAAATAATAATAATATCT-GAATAT
*
16525814 TTAAAATAATTATAATATCTGAATAT
1 TT-AAATAATAATAATATCTGAATAT
16525840 TTATAATAA
1 TTA-AATAA
16525849 GATTATAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.03
26 14 0.47
27 15 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
TTAAATAATAATAATATCTGAATAT
Found at i:16526154 original size:6 final size:6
Alignment explanation
Indices: 16526125--16526241 Score: 66
Period size: 6 Copynumber: 19.0 Consensus size: 6
16526115 TATAAATTGG
*
16526125 ATATTA ATACTTA ATTATTA ATATTT ATA-TA ATATT- ATAATTA ATATTA
1 ATATTA ATA-TTA A-TATTA ATATTA ATATTA ATATTA AT-ATTA ATATTA
* * * *
16526174 TTA-TA TATATTGA ATATTAA ATATTAA ATATT- -TAATA ATATTT ATAATA
1 ATATTA -ATATT-A ATATT-A ATATT-A ATATTA ATATTA ATATTA ATATTA
16526223 ATAATT- ATAGTTA ATATTA
1 AT-ATTA ATA-TTA ATATTA
16526242 TTCGAAATAA
Statistics
Matches: 87, Mismatches: 11, Indels: 26
0.70 0.09 0.21
Matches are distributed among these distances:
4 3 0.03
5 9 0.10
6 38 0.44
7 34 0.39
8 3 0.03
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (6 bp):
ATATTA
Found at i:16526212 original size:55 final size:56
Alignment explanation
Indices: 16526125--16526230 Score: 148
Period size: 55 Copynumber: 1.9 Consensus size: 56
16526115 TATAAATTGG
*
16526125 ATATTAATACTTAATTATTAATATTTATATAATA-TTATAATTAAT-ATTATTATAT
1 ATATTAATACTTAAATATTAATATTTATATAATATTTATAA-TAATAATTATTATAT
16526180 ATATTGAATA-TTAAATATTAAATATTTA-ATAATATTTATAATAATAATTAT
1 ATATT-AATACTTAAATATT-AATATTTATATAATATTTATAATAATAATTAT
16526231 AGTTAATATT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
55 23 0.50
56 23 0.50
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (56 bp):
ATATTAATACTTAAATATTAATATTTATATAATATTTATAATAATAATTATTATAT
Found at i:16526215 original size:31 final size:31
Alignment explanation
Indices: 16526138--16526215 Score: 72
Period size: 31 Copynumber: 2.5 Consensus size: 31
16526128 TTAATACTTA
* *
16526138 ATTATTAATATTTATAT-AATATTATAATTAAT
1 ATTA-TAATATATAT-TGAATATTAAAATTAAT
*
16526170 ATTATTATATATATTGAATATTAAATATTAAAT
1 ATTATAATATATATTGAATATTAAA-ATT-AAT
16526203 ATT-TAATA-ATATT
1 ATTATAATATATATT
16526216 TATAATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
30 1 0.03
31 21 0.54
32 11 0.28
33 6 0.15
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (31 bp):
ATTATAATATATATTGAATATTAAAATTAAT
Found at i:16526227 original size:62 final size:61
Alignment explanation
Indices: 16526094--16526242 Score: 139
Period size: 62 Copynumber: 2.4 Consensus size: 61
16526084 TATGAAATCT
* * * *
16526094 TAATAT-TATTTATTATTAATTTATAAATTGGATATTAATACTTAATTATTAATATTTATA
1 TAATATATAATTAATATTAATTTATAAATTGAATATTAATACTTAAATATTAATATTTATA
*
16526154 TAATATTATAATTAATATT-ATTATATATATTGAATATTAAATA-TTAAATATTTAATAATATT-
1 TAATA-TATAATTAATATTAATT-TATAAATTGAATATT-AATACTTAAATA-TTAAT-AT-TTA
16526216 TA
60 TA
16526218 TAATA-ATAATT-ATAGTTAATATTAT
1 TAATATATAATTAATA-TTAAT-TTAT
16526243 TCGAAATAAT
Statistics
Matches: 74, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
60 5 0.07
61 7 0.09
62 36 0.49
63 14 0.19
64 10 0.14
65 2 0.03
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.51
Consensus pattern (61 bp):
TAATATATAATTAATATTAATTTATAAATTGAATATTAATACTTAAATATTAATATTTATA
Found at i:16526362 original size:16 final size:15
Alignment explanation
Indices: 16526343--16526394 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 15
16526333 ATTATCAATT
*
16526343 TATATTATATTTATTA
1 TATATTATAATTA-TA
16526359 TATATTATAATTATA
1 TATATTATAATTATA
*
16526374 TATA--ATAAATATA
1 TATATTATAATTATA
16526387 TA-ATTATA
1 TATATTATA
16526395 TTAATTACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 1 0.03
13 10 0.31
14 3 0.09
15 6 0.19
16 12 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATATTATAATTATA
Found at i:16526373 original size:13 final size:13
Alignment explanation
Indices: 16526333--16526394 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
16526323 AATCTATACA
16526333 ATTATCAATT-TAT
1 ATTAT-AATTATAT
16526346 ATTATATTTATTATAT
1 ATTATA---ATTATAT
16526362 ATTATAATTATAT
1 ATTATAATTATAT
* *
16526375 ATAATAAATATAT
1 ATTATAATTATAT
16526388 AATTATA
1 -ATTATA
16526395 TTAATTACAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 1 0.02
13 23 0.56
14 5 0.12
15 3 0.07
16 9 0.22
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTATAATTATAT
Found at i:16526406 original size:22 final size:21
Alignment explanation
Indices: 16526346--16526407 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
16526336 ATCAATTTAT
* *
16526346 ATTATATTTATTATATATTATA
1 ATTATATTAATTAAATA-TATA
16526368 ATTATATATAA-TAAATATATA
1 ATTATAT-TAATTAAATATATA
16526389 ATTATATTAATTACAATAT
1 ATTATATTAATTA-AATAT
16526408 TTATAGTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 17 0.49
23 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATATTAATTAAATATATA
Found at i:16527853 original size:177 final size:176
Alignment explanation
Indices: 16527459--16528100 Score: 500
Period size: 177 Copynumber: 3.6 Consensus size: 176
16527449 TTTGACCATT
* * ** *
16527459 TTTTAGTCATAAAACAATTGTTTC-AATTTATACAAGCTTATTCAAAATAAATTAATACTAATTT
1 TTTT-GTCATACAACAATTGTTTCTAA-TCATACAAGCTTATTCGGAATAAAATAATACTAATTT
* ** * *
16527523 ATTAACATTTGGAAAATTAATAAGAAAGAGATTTAAAAAATAAATATGTTCGT-CGAA--CAAGT
64 ATTAATATTTTCAAAATTAATAAG--A-A-ATTTAAAAAATAAATCTGTT--TACCAATCCAA-T
* * * ** * * * * * * *
16527585 TCAAATAGTTATTATTATTTGAACAATTGTCTATTTAAAAAT-GTTATAACTTTTTA
122 TAAAATAATTATGACCATTTGATCAATTATCAATAT-CAAATCATTA-AAATTTTTA
* * * * * * *
16527641 ATTTGTCACAAAACAATTGTTTC-AGTTAATACAAGCTTAGAT-GGAATAAAATAATAATAATTT
1 TTTTGTCATACAACAATTGTTTCTA-ATCATACAAGCTTA-TTCGGAATAAAATAATACTAATTT
*
16527704 ATTAATATTTTCAAAATTAATAAGAAATTTAAAAAATAAATCTGTTTACCAAAT-TAATTAAAAT
64 ATTAATATTTTCAAAATTAATAAGAAATTTAAAAAATAAATCTGTTTACC-AATCCAATTAAAAT
* * * **
16527768 AATTATGGCCATTTGAAT-AATTATCTATTTCAAATCATTATGACCTTTTTA
128 AATTATGACCATTTG-ATCAATTATCAATATCAAATCATTA--AAATTTTTA
* * ** *
16527819 TTTTGTCATA-ATACAATT-TTTTTTATCATACAAGCTTATTCAAAATAAAATAATACTAATTGA
1 TTTTGTCATACA-ACAATTGTTTCTAATCATACAAGCTTATTCGGAATAAAATAATACTAATTTA
* * * * *
16527882 TTAATA-TTTCAAAAATAATAGGTAACAGATTTAAACAATAAATCTGTTTACCAATCCAGTTTAA
65 TTAATATTTTCAAAATTAATAAG--A-A-ATTTAAAAAATAAATCTGTTTACCAATCCAATTAAA
* *
16527946 ATAATTATGACTATTTGATCAATTATCAATATCAAATCATTAAAATTTTTT
126 ATAATTATGACCATTTGATCAATTATCAATATCAAATCATTAAAATTTTTA
* * *
16527997 TTTTGTCATACAACAATTGTTTCTAATCATAGAAGCCTATTCGG-TTAAAAATAATACTAATTTA
1 TTTTGTCATACAACAATTGTTTCTAATCATACAAGCTTATTCGGAAT-AAAATAATACTAATTTA
* * * *
16528061 ATAATATTTTAAAAATTAATAAGAGATTTAAAAATTAAAT
65 TTAATATTTTCAAAATTAATAAGAAATTTAAAAAATAAAT
16528101 ATGTGTGCTA
Statistics
Matches: 373, Mismatches: 66, Indels: 48
0.77 0.14 0.10
Matches are distributed among these distances:
175 1 0.00
176 33 0.09
177 91 0.24
178 51 0.14
179 48 0.13
180 76 0.20
181 69 0.18
182 4 0.01
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (176 bp):
TTTTGTCATACAACAATTGTTTCTAATCATACAAGCTTATTCGGAATAAAATAATACTAATTTAT
TAATATTTTCAAAATTAATAAGAAATTTAAAAAATAAATCTGTTTACCAATCCAATTAAAATAAT
TATGACCATTTGATCAATTATCAATATCAAATCATTAAAATTTTTA
Found at i:16527972 original size:180 final size:179
Alignment explanation
Indices: 16526994--16528407 Score: 815
Period size: 180 Copynumber: 7.9 Consensus size: 179
16526984 TTGAACATTT
* * *
16526994 AAATATAATTAGTAAGAGATTTAAAAAGTAAATCTGTTTACCAAACCA-TTTCAAAT-ATTTTGA
1 AAAT-TAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTT-AAATAATTATGA
** * * *
16527057 CTATTTGAATAATTATCTATTTCAAATCATTAT-AAGTTTTTATTTTGTCATTAAATAATTTGTT
64 CTATTTG-ATAATTATCTATTTCAAATCATTATGACCTTTTTATTTTGTCATAAAACAATTTTTT
* * * ** ** * * * *
16527121 CTATTTATACTATTTTATTTGAAATAAAATAATGCAAATTTAATAATATTCCA
128 TTA-TCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCA
** * * * ** * * * **
16527174 AAACTTAATAACCAAAAAAATTTTAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAA
1 AAA-TTAATAA-GTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTTAAATAATTATGA
** * ** * *
16527239 CTATATAAATGATTATCTATTTCAAATTGTTATGA-CATTTTCTTTTGTCATAAAACAATTGTTT
64 CTAT-TTGATAATTATCTATTTCAAATCATTATGACCTTTTTATTTTGTCATAAAACAATT-TTT
* * * * *
16527303 TGTT-T-GTACAAGCTTATTCATATTCAAATAATACTAATTTCA-TAATATTTAAA
127 T-TTATCATACAAGCTTATTCAAAATAAAATAATACTAATTT-ATTAATATTT-CA
* * * * * * * ** *
16527356 AAATTAATAAATAAGAGATTTAAAAAATAAATTTATCTATCGAATCA-TTTCAAATGGTTAAGAC
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTT-AAATAATTATGAC
** * * * * * *
16527420 TATTAAAATAATTATATACTTCAAATCGCTT-TGACC-ATTT-TTTAGTCATAAAACAATTGTTT
65 TATT-TGATAATTATCTATTTCAAATC-ATTATGACCTTTTTATTTTGTCATAAAACAATTTTTT
** * * * *
16527482 CAATTTATACAAGCTTATTCAAAATAAATTAATACTAATTTATTAACATTTGGA
128 TTA-TCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-CA
* * *** * * * * * *
16527536 AAATTAATAAGAAAGAGATTTAAAAAATAAATATGTTCGTCGAACAAGTTCAAATAGTTATTATT
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTTAAATAATTATGACT
* * * * * * *
16527601 ATTTGAACAATTGTCTATTTAAAAAT-GTTAT-AACTTTTTAATTTGTCACAAAACAATTGTTTC
66 ATTTG-ATAATTATCTATTT-CAAATCATTATGACCTTTTTATTTTGTCATAAAACAATT-TTT-
* * ** *
16527664 AGTTA--ATACAAGCTTAGAT-GGAATAAAATAATAATAATTTATTAATATTTTCA
127 -TTTATCATACAAGCTTA-TTCAAAATAAAATAATACTAATTTATTAATA-TTTCA
** * * * *
16527717 AAATTAATAAG--A-A-ATTTAAAAAATAAATCTGTTTACCAAATTAATTAAAATAATTATGGCC
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTTAAATAATTATGACT
*
16527778 ATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTTATTTTGTCATAATACAATTTTTTTT
66 ATTTG-ATAATTATCTATTTCAAATCATTATGACCTTTTTATTTTGTCATAAAACAATTTTTTTT
*
16527843 ATCATACAAGCTTATTCAAAATAAAATAATACTAATTGATTAATATTTCA
130 ATCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCA
* * * * *
16527893 AAAATAATAGGTAACAGATTTAAACAATAAATCTGTTTACCAATCCAGTTTAAATAATTATGACT
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTTAAATAATTATGACT
* * ** * * *
16527958 ATTTGATCAATTATCAATATCAAATCATTA--AAATTTTTTTTTTGTCATACAACAATTGTTTCT
66 ATTTGAT-AATTATCTATTTCAAATCATTATGACCTTTTTATTTTGTCATAAAACAATT-TTTTT
* * * *** * *
16528021 AATCATAGAAGCCTATTC-GGTTAAAAATAATACTAATTTAATAATATTTTA
129 TATCATACAAGCTTATTCAAAAT-AAAATAATACTAATTTATTAATATTTCA
* * * * * * * * * ** *
16528072 AAA--ATTAA-TAAGAGATTTAAAAATTAAATATGTGTGCTAAACCAGTTCAAATAGTAAAAACA
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTTAAATAATTATGACT
* * * * *
16528134 ATTAGAATAATTATCTATTTTAAAT-AGTTCA-AACC-TTTTATTTAGTCATAAAA-TATTTTTT
66 ATTTG-ATAATTATCTATTTCAAATCA-TT-ATGACCTTTTTATTTTGTCATAAAACAATTTTTT
* * * *** * * * * *
16528195 TCATGTCTTATAAGCTTATTTGGAATAAAATAATCCAAATTTATGAACATTTGGA
128 T--TATCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-CA
* * * *
16528250 AAATTAATAAGCAAAAGATTTGAAAAAATAAATTTGTTTACCAAACAAGTTTAAA-AAGTTATGA
1 AAATTAATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACCAAACCAGTTTAAATAA-TTATGA
* * * * *
16528314 CTATTTGATCAATTAT-TTTTATAAAATCATTATGACC-TTTTGTTTTGACATAAAACAATTGTT
64 CTATTTGAT-AATTATCTATT-TCAAATCATTATGACCTTTTTATTTTGTCATAAAACAATTTTT
** * *
16528377 TCAATTCATAAAAAGCTTATCCAAAATAAAA
127 TTTA-TCAT-ACAAGCTTATTCAAAATAAAA
16528408 AGAATTTAAT
Statistics
Matches: 935, Mismatches: 238, Indels: 119
0.72 0.18 0.09
Matches are distributed among these distances:
175 8 0.01
176 82 0.09
177 148 0.16
178 58 0.06
179 77 0.08
180 244 0.26
181 157 0.17
182 131 0.14
183 28 0.03
184 2 0.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.39
Consensus pattern (179 bp):
AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCAAACCAGTTTAAATAATTATGACT
ATTTGATAATTATCTATTTCAAATCATTATGACCTTTTTATTTTGTCATAAAACAATTTTTTTTA
TCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCA
Found at i:16528775 original size:179 final size:177
Alignment explanation
Indices: 16528511--16529472 Score: 768
Period size: 179 Copynumber: 5.4 Consensus size: 177
16528501 ATTATGATGT
* * * * *
16528511 TTTGTCATAAAATAATTG-TTTC-AGTTCATAAAAGCTTATTCAAAATAAAATAATTCTAATTTA
1 TTTGTCATAAAACAATTGTTTTCTA-TTCATACATGCTTATTCAAAATAAAATAATACTAATCTA
* * * * * ** *
16528574 TTACTATTCCAAAAATTAATAAGTGATTTAAAAAATGAATCTATTTGCCAAATTAGTTCAAATAA
65 TTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAG
* * ** *
16528639 TTATGA-TCATTTCAACAATTATCTATTTCAAATTGTTATCACCTTTTG
130 TTATGACT-ATTTGAACAATTATATATTTCAAATCATTATAACCTTTTG
* * * * * * *
16528687 TTTGGTCATATAACAATTGTTTTTTTTATCATACATGATTATTCGAAATAAAATAATAATAATAT
1 TTT-GTCATAAAACAATTGTTTTCTAT-TCATACATGCTTATTCAAAATAAAATAATACTAATCT
* * * * **
16528752 ATTAATCTTTCAAAAATTAATAAGAGATTTAAAAAATGAATTTGTTTACTGAACCAGTTCAAATA
64 ATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATA
* * * *
16528817 GTTATGACTATTTAAACAATTCTATACTTCATATCATTATAACCTTTTG
129 GTTATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTG
* * * * *
16528866 TTATCTCATAAAAACAATT-ATTTCTATTCATACAAGCTTAGTCAAAATAAAACAATACTAATCT
1 TT-TGTCAT-AAAACAATTGTTTTCTATTCATACATGCTTATTCAAAATAAAATAATACTAATCT
* * * * *
16528930 AATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATAAAT-T-TTT--CGAACCAATTCA
64 ATTAATATTTCAAAAA-T--TAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCA
** * * ** *
16528991 AATAGTTAAAACTATATGAACAATTATCTATTTCAAATTGTTATGACCTTTTG
125 AATAGTTATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTG
** * * * *
16529044 TCTTGTCATAAAACAA-AATTTTCAATTCATAC-TAGCTTATTCTAAATAAAATAA-AATGAATT
1 T-TTGTCATAAAACAATTGTTTTCTATTCATACAT-GCTTATTCAAAATAAAATAATACT-AATC
* * * **
16529106 TATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAATTTTGTTTACTTAACCAGTTC
63 TATTAATATTTC-AAAAAT--TAA-TAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTC
* * * * *
16529171 AAAAAATTAT-ACTATTTGAACAATTATATA-TTCTGAATCATTATTACTTTTTG
124 AAATAGTTATGACTATTTGAACAATTATATATTTC-AAATCATTATAACCTTTTG
* * * * * * * *
16529224 TTTTGTCATACAACAAATGTTTT-TGTCCATATAAGTTTATTCAAAATAAAGTAATACTAATCTA
1 -TTTGTCATAAAACAATTGTTTTCTATTCATACATGCTTATTCAAAATAAAATAATACTAATCTA
* * * * * * * *
16529288 TTAATATTTTAAAAATTAATAAGTGATTTAGACAACAAATCTATGTATCAAACTAGTTCAAATAG
65 TTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAG
* * * *
16529353 TTATGACTATTTGAGCAATTATTTATTTCAAATCATTATGACTTTTTG
130 TTATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTG
** * *** * *
16529401 ATTTGTTGTAAAACAATT-TTTT-TATTCATACAAGCTTATTTGCATTAAAATAATACTAATTTA
1 -TTTGTCATAAAACAATTGTTTTCTATTCATACATGCTTATTCAAAATAAAATAATACTAATCTA
16529464 TTAATATTT
65 TTAATATTT
16529473 TGACAATTAG
Statistics
Matches: 623, Mismatches: 136, Indels: 54
0.77 0.17 0.07
Matches are distributed among these distances:
176 85 0.14
177 138 0.22
178 114 0.18
179 147 0.24
180 94 0.15
181 26 0.04
182 19 0.03
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.40
Consensus pattern (177 bp):
TTTGTCATAAAACAATTGTTTTCTATTCATACATGCTTATTCAAAATAAAATAATACTAATCTAT
TAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAGT
TATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTG
Found at i:16529214 original size:17 final size:17
Alignment explanation
Indices: 16529175--16529207 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16529165 CAGTTCAAAA
16529175 AATTATACTATTTGAAC
1 AATTATACTATTTGAAC
16529192 AATTATA-TATTCTGAA
1 AATTATACTATT-TGAA
16529208 TCATTATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (17 bp):
AATTATACTATTTGAAC
Found at i:16529273 original size:180 final size:177
Alignment explanation
Indices: 16528508--16529472 Score: 646
Period size: 177 Copynumber: 5.4 Consensus size: 177
16528498 ATCATTATGA
* * * ** *
16528508 TGTTTTGTCATAAAATAATTGTTTC-AGTTCATAAAAGCTTATTCAAAATAAAATAATTCTAATT
1 TGTTTTGTCATAAAACAAAT-TTTCTA-TTCATATAAGCTTATTCAAAATAAAATAATAATAATC
* * * * * * ** **
16528572 TATTACTA-TTCCAAAAAT--TAA-TAAGTGATTTAAAAAATGAATCTATTTGCCAAATTAGTTC
64 TATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAAT-AATTTGTTTACTGAACCAGTTC
* * * * ** *
16528633 AAATAATTATGA-TCATTTCAACAATTATCTATTTCAAATTGTTATCACCTTT
128 AAATAGTTAT-ACT-ATTTGAACAATTATATA-TTCTAATCATTATAACCTTT
* * * * * * *
16528685 TGTTTGGTCATATAAC-AATTGTTTTTTTTATCATACATGATTATTCGAAATAAAATAATAATAA
1 TGTTTTGTCATAAAACAAATT-TTCTATTCAT-ATA-A-GCTTATTCAAAATAAAATAATAATAA
* *
16528749 TATATTAATCTTTC-AAAAAT--TAA-TAAGAGATTTAAAAAATGAATTTGTTTACTGAACCAGT
62 TCTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAAT-AATTTGTTTACTGAACCAGT
* *
16528810 TCAAATAGTTATGACTATTTAAACAATTCTATACTTC-ATATCATTATAACCTTT
126 TCAAATAGTTAT-ACTATTTGAACAATTATATA-TTCTA-ATCATTATAACCTTT
* * * * * * *
16528864 TGTTATCTCATAAAAACAATTATTTCTATTCATACAAGCTTAGTCAAAATAAAACAATACTAATC
1 TGTTTTGTCAT-AAAACAAAT-TTTCTATTCATATAAGCTTATTCAAAATAAAATAATAATAATC
* * * * * * *
16528929 TAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATAAATT-TTT-C-GAACCAATTCA
64 TATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAATTTGTTTACTGAACCAGTTCA
* * * * ** *
16528991 AATAGTTAAAACTATATGAACAATTATCTATTTCAAATTGTTATGACCTTT
129 AATAGTT-ATACTATTTGAACAATTATATA-TTCTAATCATTATAACCTTT
* * *
16529042 TGTCTTGTCATAAAACAAAATTTTCAATTCATACT-AGCTTATTCTAAATAAAATAA-AATGAAT
1 TGTTTTGTCATAAAAC-AAATTTTCTATTCATA-TAAGCTTATTCAAAATAAAATAATAAT-AAT
* *
16529105 TTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAATTTTGTTTACTTAACCAGTT
63 CTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAA-TTTGTTTACTGAACCAGTT
* * * *
16529170 CAAAAAATTATACTATTTGAACAATTATATATTCTGAATCATTATTACTTTT
127 CAAATAGTTATACTATTTGAACAATTATATATTCT-AATCATTATAACCTTT
* * * * * * *
16529222 TGTTTTGTCATACAACAAATGTTTTTGTCCATATAAGTTTATTCAAAATAAAGTAATACTAATCT
1 TGTTTTGTCATAAAACAAAT-TTTCTATTCATATAAGCTTATTCAAAATAAAATAATAATAATCT
* * * * * *
16529287 ATTAATATTT-TAAAAAT--TAA-TAAGTGATTTAGACAACA-AATCTATGTAT-C-AAACTAGT
65 ATTAATATTTCAAAAAATAATAAGTAAGAGATTTA-A-AAAATAAT-T-TGTTTACTGAACCAGT
* * * * *
16529345 TCAAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCATTATGACTTTT
126 TCAAATAGTTAT-ACTATTTGAACAATTATATA-TTCTAATCATTATAACCTTT
* ** * * * *** * * *
16529399 TGATTTGTTGTAAAACAATTTTTTTATTCATACAAGCTTATTTGCATTAAAATAATACTAATTTA
1 TGTTTTGTCATAAAACAAATTTTCTATTCATATAAGCTTATTCAAAATAAAATAATAATAATCTA
16529464 TTAATATTT
66 TTAATATTT
16529473 TGACAATTAG
Statistics
Matches: 625, Mismatches: 129, Indels: 69
0.76 0.16 0.08
Matches are distributed among these distances:
175 1 0.00
176 81 0.13
177 147 0.24
178 104 0.17
179 144 0.23
180 99 0.16
181 32 0.05
182 17 0.03
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (177 bp):
TGTTTTGTCATAAAACAAATTTTCTATTCATATAAGCTTATTCAAAATAAAATAATAATAATCTA
TTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAATTTGTTTACTGAACCAGTTCAAA
TAGTTATACTATTTGAACAATTATATATTCTAATCATTATAACCTTT
Found at i:16529350 original size:357 final size:350
Alignment explanation
Indices: 16528508--16529472 Score: 1032
Period size: 357 Copynumber: 2.7 Consensus size: 350
16528498 ATCATTATGA
* * * *
16528508 TGTTTTGTCATAAAATAATTGTTTCAGTTCATAAAAGCTTATTCAAAATAAAATAATTCTAATTT
1 TGTTTTGTCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATCT
* * *
16528573 ATTACTATTCCAAAAATTAATAAGTGATTTAAAAAATGAATCTATTTGCCAAATTAGTTCAAATA
66 ATTAATATTCCAAAAATTAATAAGTGATTTAAAAAATAAATCTATTT--CAAACTAGTTCAAATA
* * * *
16528638 ATTATGA-TCATTTCAACAATTATCTATTTCAAATTGTTATCACCTTTTGTTTGGTCATATAACA
129 GTTATGACT-ATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTT-GTCATAAAACA
** * * * * *
16528702 ATTGTTTTTTTTATCATACATGATTATTCGAAATAAAATAATAATAATATATTAATCTTTCAAAA
192 A-AATTTTTTAT-TCATACA-GCTTATTCTAAATAAAATAATAATAATTTATTAATATTTCAAAA
* *
16528767 ATTAATAAGAGATTTAAAAAATGAATTTGTTTACTGAACCAGTTCAAATAGTTATGACTATTTAA
254 ATTAATAAGAGATTTAAAAAATGAATTTGTTTACTGAACCAGTTCAAAAAATTATGACTATTTAA
*
16528832 ACAATTCTATACTTCATATCATTATAACCTTT
319 ACAATTATATACTTCATATCATTATAACCTTT
* * * * * * *
16528864 TGTTATCTCATAAAAACAATTATTTCTATTCATACAAGCTTAGTCAAAATAAAACAATACTAATC
1 TGTTTTGTCAT-AAAACAATTGTTTCTGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATC
* * * * *
16528929 TAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATAAAT-T-TTTCGAACCAATTCAA
65 TATTAATATTCCAAAAA-T--TAA-TAAGTGATTTAAAAAATAAATCTATTTCAAACTAGTTCAA
** *
16528992 ATAGTTAAAACTATATGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTCTTGTCATAAAA
126 ATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGT-TTGTCATAAAA
**
16529057 CAAAATTTTCAATTCATACTAGCTTATTCTAAATAAAATAA-AATGAATTTATTAATATTTCAAA
190 CAAAATTTTTTATTCATAC-AGCTTATTCTAAATAAAATAATAAT-AATTTATTAATATTTC-AA
*
16529121 AAATAATAAGTAAGAGATTTAAAAAAT-AATTTTGTTTACTTAACCAGTTCAAAAAATTAT-ACT
252 AAAT--TAA-TAAGAGATTTAAAAAATGAA-TTTGTTTACTGAACCAGTTCAAAAAATTATGACT
* * *
16529184 ATTTGAACAATTATATA-TTC-TGAATCATTATTACTTTT
313 ATTTAAACAATTATATACTTCAT--ATCATTATAACCTTT
* * * * * * *
16529222 TGTTTTGTCATACAACAAATGTTTTTGTCCATATAAGTTTATTCAAAATAAAGTAATACTAATCT
1 TGTTTTGTCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATCT
** * * *
16529287 ATTAATATTTTAAAAATTAATAAGTGATTTAGACAACAAATCTATGTATCAAACTAGTTCAAATA
66 ATTAATATTCCAAAAATTAATAAGTGATTTAAAAAATAAATCTAT-T-TCAAACTAGTTCAAATA
* * ** * **
16529352 GTTATGACTATTTGAGCAATTATTTATTTCAAATCATTATGACTTTTTGATTTGTTGTAAAAC-A
129 GTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTG-TTTGTCATAAAACAA
* * * *
16529416 ATTTTTTTATTCATACAAGCTTATT-TGCATTAAAATAATACTAATTTATTAATATTT
193 AATTTTTTATTCATAC-AGCTTATTCT-AAATAAAATAATAATAATTTATTAATATTT
16529473 TGACAATTAG
Statistics
Matches: 504, Mismatches: 82, Indels: 46
0.80 0.13 0.07
Matches are distributed among these distances:
353 17 0.03
354 7 0.01
355 40 0.08
356 70 0.14
357 250 0.50
358 50 0.10
359 47 0.09
360 4 0.01
361 19 0.04
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (350 bp):
TGTTTTGTCATAAAACAATTGTTTCTGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATCT
ATTAATATTCCAAAAATTAATAAGTGATTTAAAAAATAAATCTATTTCAAACTAGTTCAAATAGT
TATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTGTCATAAAACAAAAT
TTTTTATTCATACAGCTTATTCTAAATAAAATAATAATAATTTATTAATATTTCAAAAATTAATA
AGAGATTTAAAAAATGAATTTGTTTACTGAACCAGTTCAAAAAATTATGACTATTTAAACAATTA
TATACTTCATATCATTATAACCTTT
Done.