Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 74 of 113
Found at i:16569448 original size:171 final size:166
Alignment explanation
Indices: 16569248--16569560 Score: 398
Period size: 169 Copynumber: 1.9 Consensus size: 166
16569238 GTTATAACTA
* * * *
16569248 TTTGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAATAATTATTTCTGT
1 TTTGAACAATTATCTATTTCAAATCATTATGA-CATTTGTATTATCACAAAACAATTATTTCTGT
*
16569313 TCATAC-AGTCTTATTCGAAATAA-AGTAATACTAATTTATCAATATTTTGAAATTAA-TAAGTA
65 T-ATACTAG-CTTATTCGAAATAATA-TAATACTAATTTATCAATATTCT-AAA--AATTAA-TA
*
16569375 ATAGATTTAAAAAATGAATCAATTGGCCTGCAAATAGTTGACTG
123 AGAGATTTAAAAAATGAATCAATTGGCCTGCAAATAGTTGACTG
* * * *
16569419 TTTGAATAATTATCTATTTCAAATCATTATGACTTTTGTTTTATCACAAAACAATTGTTTCTGTT
1 TTTGAACAATTATCTATTTCAAATCATTATGACATTTGTATTATCACAAAACAATTATTTCTGTT
* * * * *
16569484 GTACTAGCTTATTTGAAATAATATAATTCTATTTTATTAATATTCTAAAAATTAATAAGAGATTT
66 ATACTAGCTTATTCGAAATAATATAATACTAATTTATCAATATTCTAAAAATTAATAAGAGATTT
16569549 AAAAAATGAATC
131 AAAAAATGAATC
16569561 TGTTTATCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
166 23 0.19
167 3 0.02
168 3 0.02
169 35 0.28
170 30 0.24
171 30 0.24
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (166 bp):
TTTGAACAATTATCTATTTCAAATCATTATGACATTTGTATTATCACAAAACAATTATTTCTGTT
ATACTAGCTTATTCGAAATAATATAATACTAATTTATCAATATTCTAAAAATTAATAAGAGATTT
AAAAAATGAATCAATTGGCCTGCAAATAGTTGACTG
Found at i:16569612 original size:16 final size:17
Alignment explanation
Indices: 16569580--16569612 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16569570 AACAAGTACA
16569580 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
16569598 AATAATTAT-CTATTT
1 AATAATTATACTATTT
16569613 CTAATCACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:16569815 original size:181 final size:177
Alignment explanation
Indices: 16569239--16569817 Score: 551
Period size: 181 Copynumber: 3.3 Consensus size: 177
16569229 GTTCAATTAG
* * * * * *
16569239 TTATAACTATTTGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAATAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCCTAAAACAAT
* * ** *
16569304 TATTTCTGTTCATACAGTCTTA-TTCGAAATAAAGTAATACTAATTTATCAATATTTTGAAATTA
66 TATTTCTGTTCATACAG-CTTATTTC-AAATAAAATAATACTAATTTATTAATA-TTCAAAAATA
* * **
16569368 ATAAGTAATAGATTTAAAAAATGAATC-AATTGGCC--T--G-CAAAT-A
128 ATAAGTAAAAGATTTAAAAAATGAATCTATTTATCCAATAAGTCAAATAA
* * * *
16569411 GT-TGACTGTTTGAATAATTATCTATTTCAAATCATTATGA-CTTTTGTTTTATCAC-AAAACAA
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTC-CTAAAACAA
* * * * * *
16569473 TTGTTTCTGTT-GTACTAGCTTATTTGAAATAATATAATTCTATTTTATTAATATTCTAAAAAT-
65 TTATTTCTGTTCATAC-AGCTTATTTCAAATAAAATAATACTAATTTATTAATATTC-AAAAATA
* * * *
16569536 -TAA-TAAGAGATTTAAAAAATGAATCTGTTTATCAAACAAGTACAAATAA
128 ATAAGTAAAAGATTTAAAAAATGAATCTATTTATCCAATAAGT-CAAATAA
* * * *
16569585 TTATGACTATTTGAATAATTATCTATTTCTAATCACTATAACCTTTTGTTTTGTCCTAAAACAA-
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCCTAAAACAAT
* * * *
16569649 AATTTTCTATTCATACAAGCTTATTTCAAATAAAATTATACAAATTTATTAATATTCAAACAACT
66 TA-TTTCTGTTCATAC-AGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCAAA-AA-T
* *
16569714 AATAAGTAAAAGATTTAAAAAATAAATCTATTTATCCAATAAGTTTAAATAA
127 AATAAGTAAAAGATTTAAAAAATGAATCTATTTATCCAATAAG-TCAAATAA
* ** *
16569766 TTATGACTATTTGAACAATTATTTATTTCAAATTGTTATGACTTTTTGTTTT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
16569818 CTCATGACAC
Statistics
Matches: 325, Mismatches: 59, Indels: 37
0.77 0.14 0.09
Matches are distributed among these distances:
166 21 0.06
167 6 0.02
168 2 0.01
169 33 0.10
170 30 0.09
171 35 0.11
172 1 0.00
173 5 0.02
174 2 0.01
175 35 0.11
176 29 0.09
177 39 0.12
178 1 0.00
180 3 0.01
181 82 0.25
182 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (177 bp):
TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCCTAAAACAAT
TATTTCTGTTCATACAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCAAAAATAATA
AGTAAAAGATTTAAAAAATGAATCTATTTATCCAATAAGTCAAATAA
Found at i:16570764 original size:26 final size:26
Alignment explanation
Indices: 16570735--16570801 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
16570725 AATACTTATA
16570735 ATTTATTATTAATTATTTGAA-TATTG
1 ATTT-TTATTAATTATTTGAATTATTG
* * *
16570761 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATTTGAATTATTG
16570788 ATTTTTATTAATTA
1 ATTTTTATTAATTA
16570802 ATAGATATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.06
26 21 0.62
27 11 0.32
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (26 bp):
ATTTTTATTAATTATTTGAATTATTG
Found at i:16571879 original size:16 final size:17
Alignment explanation
Indices: 16571838--16571879 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
16571828 TTTATCATTA
16571838 ATAATAATTATTTAACT
1 ATAATAATTATTTAACT
* *
16571855 AT-ATTATTATTT-ATT
1 ATAATAATTATTTAACT
16571870 ATAATAATTA
1 ATAATAATTA
16571880 AATAATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 4 0.19
16 15 0.71
17 2 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
ATAATAATTATTTAACT
Found at i:16572029 original size:19 final size:20
Alignment explanation
Indices: 16571989--16572039 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
16571979 ACTAACATTA
*
16571989 TAATATTATATTTATAATAAT
1 TAATATTA-ATTAATAATAAT
16572010 TAATATTAATTAAT-ATAAT
1 TAATATTAATTAATAATAAT
16572029 TAATATATAAT
1 TAATAT-TAAT
16572040 ATTTGAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 11 0.39
20 9 0.32
21 8 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATATTAATTAATAATAAT
Found at i:16572030 original size:9 final size:9
Alignment explanation
Indices: 16572005--16572035 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
16571995 TATATTTATA
16572005 ATAATTAAT
1 ATAATTAAT
16572014 ATTAATTAAT
1 A-TAATTAAT
16572024 ATAATTAAT
1 ATAATTAAT
16572033 ATA
1 ATA
16572036 TAATATTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
ATAATTAAT
Found at i:16572731 original size:18 final size:17
Alignment explanation
Indices: 16572701--16572777 Score: 56
Period size: 18 Copynumber: 4.5 Consensus size: 17
16572691 TAAATTTATA
16572701 ATAATTAATCTAATTAAT
1 ATAATTAATCTAA-TAAT
16572719 ATAATATAA-CTAATAAT
1 ATAAT-TAATCTAATAAT
*
16572736 AATTCATATAAT-T-ATAAT
1 -A-TAAT-TAATCTAATAAT
*
16572754 ATAATTACT-TAATAAT
1 ATAATTAATCTAATAAT
16572770 -TAATTAAT
1 ATAATTAAT
16572778 TATTATAACA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
15 11 0.22
16 8 0.16
17 5 0.10
18 15 0.30
19 11 0.22
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (17 bp):
ATAATTAATCTAATAAT
Found at i:16572735 original size:30 final size:32
Alignment explanation
Indices: 16572699--16572785 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 32
16572689 TTTAAATTTA
16572699 TAATAATTAATCTAATTAATATAATAT-A-AC-
1 TAATAATTAAT-TAATTAATATAATATAATACT
*
16572729 TAATAA-TAATTCATATAATTATAATATAATTACT
1 TAATAATTAATTAAT-TAA-TATAATATAA-TACT
*
16572763 TAATAATTAATTAATTATTATAA
1 TAATAATTAATTAATTAATATAA
16572786 CATTAAATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
28 3 0.06
29 7 0.15
30 14 0.30
31 1 0.02
33 7 0.15
34 8 0.17
35 7 0.15
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (32 bp):
TAATAATTAATTAATTAATATAATATAATACT
Found at i:16572737 original size:33 final size:29
Alignment explanation
Indices: 16572697--16572785 Score: 90
Period size: 33 Copynumber: 2.9 Consensus size: 29
16572687 ATTTTAAATT
16572697 TATAATAATTAATCTAATTAATATAATATAAC
1 TATAATAATTAAT-TAATTAATATAAT-T-AC
*
16572729 TAATAATAATTCATATAATTATAATATAATTAC
1 T-ATAATAATTAAT-TAA-T-TAATATAATTAC
*
16572762 T-TAATAATTAATTAATTATTATAA
1 TATAATAATTAATTAATTAATATAA
16572786 CATTAAATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
28 7 0.14
29 1 0.02
30 3 0.06
31 10 0.20
32 1 0.02
33 17 0.34
34 2 0.04
35 9 0.18
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (29 bp):
TATAATAATTAATTAATTAATATAATTAC
Found at i:16573028 original size:17 final size:17
Alignment explanation
Indices: 16572970--16573035 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
16572960 TATTAATATA
*
16572970 AATTAA-AATAAT-TTT
1 AATTAATAATATTATTT
*
16572985 AATT-TTAATATTA--T
1 AATTAATAATATTATTT
* *
16572999 AATTTAATTATATTGTTT
1 AA-TTAATAATATTATTT
16573017 AATTAATAATATTATTT
1 AATTAATAATATTATTT
16573034 AA
1 AA
16573036 ATTAGTTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
14 3 0.08
15 11 0.29
16 6 0.16
17 15 0.39
18 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
AATTAATAATATTATTT
Found at i:16573051 original size:33 final size:30
Alignment explanation
Indices: 16572989--16573066 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
16572979 AATTTTAATT
* *
16572989 TTAATATTATAATTT-AATTATATTGTTTAA
1 TTAATAATAT-ATTTAAATTATATTATTTAA
16573019 TTAATAATATTATTTAAATTAGTTATTATTTAA
1 TTAATAATA-TATTTAAATTA--TATTATTTAA
*
16573052 ATAA-AATA-ATTTAAA
1 TTAATAATATATTTAAA
16573067 CAATTGTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 19 0.46
31 6 0.15
32 4 0.10
33 12 0.29
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (30 bp):
TTAATAATATATTTAAATTATATTATTTAA
Found at i:16573454 original size:178 final size:182
Alignment explanation
Indices: 16573064--16573681 Score: 509
Period size: 178 Copynumber: 3.4 Consensus size: 182
16573054 AAAATAATTT
* * * * *
16573064 AAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGC
1 AAACAATTGTTTTATGACTAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
* * *
16573129 CATAATTATTTGAA-TTGATTTGATAAACTGATTTATGTTTTAAATCTCTAACTTATCAATTTTT
66 CATAAATATTTGAACTTGATTCGATAAACTGATTTATGTTCTAAATCTCTAACTTATCAATTTTT
* * *
16573193 ATAATATTAATAAAGTAATATTATTTTATTTCATATAAGCTTTTATGAACTA
131 AGAATATTAATAAAGTAATATTATTTTATTTCATATAAGCATGTATGAACTA
* *
16573245 AAACAATTGTTTTATGA-TAAA-ATATAAGGTCATAATGATTTTAAATATATAATTGTTCAAATA
1 AAACAATTGTTTTATGACTAAACA-A-AAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * *
16573308 GTCAAAAATATTTGAACTTG-TTCGGTAAA-TAGATTT-T-TTCT-AATTTCTTACTTAAT-AAT
64 GTCATAAATATTTGAACTTGATTCGATAAACT-GATTTATGTTCTAAATCTCTAACTT-ATCAAT
* * * * ** *
16573367 TTTCT-GAATGTTAATAAATTAGTATTATTTTATTTTGA-ATAAGCATGTATGAGTTG
127 TTT-TAGAATATTAATAAAGTAATATTATTTTA-TTTCATATAAGCATGTATGAACTA
* * * *
16573423 AAGCAATTATTTTATGACTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTGTTCTAATAGT
1 AAACAATTGTTTTATGACTAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
* * ** * * * * *
16573488 C-TAACTATTTGAAC-TGATTC-AGCAAACACATTTATTTTTTAAATC-CTTACTTATTAATGTT
66 CATAAATATTTGAACTTGATTCGA-TAAACTGATTTATGTTCTAAATCTCTAACTTATCAATTTT
* * ** * * * * *
16573549 TAGAATATTATTGATTTAACAATATTTTACTCTGA-ATAAGCTTGT-TGAAC-A
130 TAGAATATTAATAAAGTAATATTATTTTA-TTTCATATAAGCATGTATGAACTA
* * * * * ** *
16573600 GAAATTAAATGTTTTAAGACAAAACAAAA-ATCATAACAATTGGAAATAGATAATTGTTCAAATA
1 -AAA-CAATTGTTTTATGACTAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* *
16573664 GTCATAACTATTTAAACT
64 GTCATAAATATTTGAACT
16573682 GGTTCAGTAA
Statistics
Matches: 351, Mismatches: 65, Indels: 43
0.76 0.14 0.09
Matches are distributed among these distances:
176 2 0.01
177 21 0.06
178 145 0.41
179 95 0.27
180 10 0.03
181 75 0.21
182 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.41
Consensus pattern (182 bp):
AAACAATTGTTTTATGACTAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
CATAAATATTTGAACTTGATTCGATAAACTGATTTATGTTCTAAATCTCTAACTTATCAATTTTT
AGAATATTAATAAAGTAATATTATTTTATTTCATATAAGCATGTATGAACTA
Found at i:16574027 original size:23 final size:22
Alignment explanation
Indices: 16573983--16574028 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
16573973 TTTATATAAT
*
16573983 TAAATAATTATATTATTAATTA
1 TAAATAATTATATAATTAATTA
* *
16574005 TAAATAAATTTTATAATTTATTA
1 TAAAT-AATTATATAATTAATTA
16574028 T
1 T
16574029 TTGTAATTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAAATAATTATATAATTAATTA
Found at i:16574055 original size:20 final size:20
Alignment explanation
Indices: 16574018--16574056 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
16574008 ATAAATTTTA
*
16574018 TAATTTATTATTTGTAATTG
1 TAATTTATTATATGTAATTG
16574038 TAATTTATATATAT-TAATT
1 TAATTTAT-TATATGTAATT
16574057 AATTAATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TAATTTATTATATGTAATTG
Found at i:16574186 original size:27 final size:27
Alignment explanation
Indices: 16574141--16574218 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
16574131 TAAATACATT
*
16574141 ATATAATT-AATTA-AT-TAATTAATAT
1 ATAT-ATTAAATTATATATAATTAATAA
* *
16574166 TTAT-TTAAAGTTATATATAATTTATAA
1 ATATATTAAA-TTATATATAATTAATAA
16574193 ATATATTAAATTATATAT--TTAATAA
1 ATATATTAAATTATATATAATTAATAA
16574218 A
1 A
16574219 AAATAATAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
23 2 0.05
24 2 0.05
25 13 0.30
26 2 0.05
27 19 0.44
28 5 0.12
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (27 bp):
ATATATTAAATTATATATAATTAATAA
Found at i:16574290 original size:19 final size:16
Alignment explanation
Indices: 16574266--16574365 Score: 63
Period size: 17 Copynumber: 6.5 Consensus size: 16
16574256 TATAATTTAG
16574266 ATATA-AATTAATTAATA
1 ATATATAATT-ATT-ATA
16574283 ATATATAATTATTATA
1 ATATATAATTATTATA
16574299 ATAT-TAATTATT-TA
1 ATATATAATTATTATA
* *
16574313 A-ATTTATACTA-TATA
1 ATATATA-ATTATTATA
* *
16574328 AAATTATTATTATTATA
1 ATA-TATAATTATTATA
*
16574345 ATATTTAA--ATTATA
1 ATATATAATTATTATA
16574359 AT-TATAA
1 ATATATAA
16574366 ACCTTTTGTT
Statistics
Matches: 68, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
13 6 0.09
14 14 0.21
15 14 0.21
16 14 0.21
17 16 0.24
18 4 0.06
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATATAATTATTATA
Found at i:16574293 original size:14 final size:14
Alignment explanation
Indices: 16574266--16574349 Score: 57
Period size: 15 Copynumber: 5.7 Consensus size: 14
16574256 TATAATTTAG
16574266 ATATAA-ATTAATT
1 ATATAATATTAATT
16574279 A-ATAATATATAATT
1 ATATAATAT-TAATT
16574293 ATTATAATATTAATT
1 A-TATAATATTAATT
* *
16574308 ATTTAA-ATTTATACT
1 ATATAATA-TTA-ATT
*
16574323 ATATAAAATTATTATT
1 ATATAATATTA--ATT
16574339 ATTATAATATT
1 A-TATAATATT
16574350 TAAATTATAA
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
12 4 0.07
13 4 0.07
14 13 0.23
15 16 0.28
16 12 0.21
17 8 0.14
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATAATATTAATT
Found at i:16576699 original size:147 final size:145
Alignment explanation
Indices: 16576540--16576848 Score: 390
Period size: 147 Copynumber: 2.1 Consensus size: 145
16576530 TATTTAAATA
** * *
16576540 GTCATAATTATTTGAACT-TACTCAGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTT
1 GTCATAATTATTTGAA-TGTACTCAAAAAACAAATTTATTTTATAAAT-TTTTACTTATTAATCT
* * *
16576604 TTGAAATTTTAATAAA-TTAGTATTATTTTATTTCG-AATAAGCTTTTATGAATAGAAAACAATT
64 TTGAAATATTAATAAATTTA-TATTATTTTATTT-GAAATAAGCTTGTATGAA-AAAAAACAATT
16576667 GGTTTATGACAAAACAAAAG
126 GGTTTATGACAAAACAAAAG
** *
16576687 GTCATAATTATTTTGAATGTGTTCAAAAAACAAATTTATTTTATATATTTTTACTTATTAATCTT
1 GTCATAATTA-TTTGAATGTACTCAAAAAACAAATTTATTTTATAAATTTTTACTTATTAATCTT
* * * *
16576752 TGGAATATTAGTAAATTTATATTATTTTATTTGAAATAAGCTTGTGTGAAAAAAAACAATTGTTT
65 TGAAATATTAATAAATTTATATTATTTTATTTGAAATAAGCTTGTATGAAAAAAAACAATTGGTT
*
16576817 TATGGCAAAACAAAAG
130 TATGACAAAACAAAAG
**
16576833 GTCATAACAATTTGAA
1 GTCATAATTATTTGAA
16576849 ATACATAATT
Statistics
Matches: 141, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
145 6 0.04
146 37 0.26
147 66 0.47
148 32 0.23
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (145 bp):
GTCATAATTATTTGAATGTACTCAAAAAACAAATTTATTTTATAAATTTTTACTTATTAATCTTT
GAAATATTAATAAATTTATATTATTTTATTTGAAATAAGCTTGTATGAAAAAAAACAATTGGTTT
ATGACAAAACAAAAG
Found at i:16577260 original size:181 final size:179
Alignment explanation
Indices: 16576734--16577265 Score: 580
Period size: 181 Copynumber: 2.9 Consensus size: 179
16576724 ATTTTATATA
* * * * *
16576734 TTTTTACTTATTAATCTTTGGAATATTAGTAAATTTATATTATTTTATTTGAAATAAGCTTGTGT
1 TTTTTACTTATTAAT-TTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGC-TATAT
* * * * * *
16576799 GAAAAAAAACAATTGTTTTATGGCAAAACAAAAGGTCATAACAATTTGAAATACATAATTGTTCA
64 GAAAAAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCC
* * * ** **
16576864 AATAGTCATAACTATTTGAACGTGTTTGGTAAATAGATTCCTTTTTTGAAT
129 AATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATTTTTAAAAT
* * * * * **
16576915 CTCTTACTCATTAATTTTTGGAATAGTAATAAATTAGTATTATTTTATTTTGAATAAGCCTATAT
1 TTTTTACTTATTAA-TTTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAG-CTATAT
*** * * * *
16576980 GAATTGATATAATTGTTTTATGACGAAACAAAAGGTTATAACGATTTGAAATAGATAATTATT-C
64 GAAAAAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCC
* * * *
16577044 AGATAGTTATTACTATTTGAACTTGTTCAGTAAACATATTTATTTTTAAAAT
129 A-ATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATTTTTAAAAT
* * *
16577096 TTTTTACTTATTAATTATTGAAATATTAATAAATTAATATTATTTTAATCCAAATAAGCTAATAT
1 TTTTTACTTATTAATT-TTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCT-ATAT
* * *
16577161 GAACAAAAATAATTGTTTTATGACAAAAAAAAAGGTCATAATGATTTGAAATAAATAATTATTCC
64 GAAAAAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCC
** * *
16577226 AATAGTCATAACTATTCAAAATTATTCGGTAAACAGATTT
129 AATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTT
16577266 GAAATAAGCT
Statistics
Matches: 284, Mismatches: 61, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
180 5 0.02
181 275 0.97
182 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (179 bp):
TTTTTACTTATTAATTTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTATATGA
AAAAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTCCAA
TAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATTTTTAAAAT
Found at i:16578098 original size:181 final size:180
Alignment explanation
Indices: 16577883--16579954 Score: 1612
Period size: 181 Copynumber: 11.7 Consensus size: 180
16577873 AAACAGAATT
* * * * * * * *
16577883 GTTATGACTTTTTGTTTTGTAATAAAACAATTGTTTTTGTTCATGCAAGCTTATTTGGATTAAAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAA
* ** * *
16577948 TAATATTAATTTATTAATATTTTGACAATTAATAAGTGAAAGATTTAAAAAATAAATATGTTTAC
66 TAATACTAATTTATTAATATTTCAAAAATTAATAAGT-AAAGATTTAAAAAATAAATTTGTTTAC
* * * * * * *
16578013 CAAATAAATTCAAATAGTCAAGATTATTTGAATAATTATCTATTTCAAATA
130 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
* * * * * * * * * *
16578064 ATTGTGACCTTCTATTTTGTAATAAAATAATTGTTT-TAGTTAACATAAGCTTATTTGAAATAAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTCGAAATAAA
* * * * *
16578128 ATAGCT-CTAATTTATTAATATTCCAAAAATTAATGAGTAAGAGAATTAAAAAAATGAATTTGTT
65 ATA-ATACTAATTTATTAATATTTCAAAAATTAATAAGTAA-AG-ATTTAAAAAATAAATTTGTT
* * *** *
16578192 TAGCTAACAAGTTCAAATAGTTATGACTATCAAAATAATTATCTATTTCAAAAC
127 TACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
** * * * * * * *
16578246 AATATGACCATTTGTTTTGTCATAAAATAATTAGTGT-TGTTCATGCACGCTTATTTTG-AATAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTA-TTCGAAATAA
* * * **
16578309 AATAATA-TAAGTTTATTAAAACTCCAAAAA-T--TAA-T-AA-A--T---AAATATGTTT-TTT
64 AATAATACTAA-TTTATTAATATTTCAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTT
16578361 ---GAACACA-TTC-AATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
128 ACCGAACA-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
** * * *
16578410 GTTATGACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCAAAATAAAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAA
* * * * *
16578475 TAATATTAGTTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAATAATAAATTTGTTTAT
66 TAATACTAATTTATTAATATTTCAAAAATTAATAAGT-AAAGATTTAAAAAATAAATTTGTTTAC
* * * * *
16578540 CGAGCAAGTTCAAATAGTTATTAGTATTTGAAAAATTATATATTTCAAATC
130 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
* * * * * * *
16578591 TTTATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCACACAAGTTTATTTGGAATAAAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAA
* * * * *
16578656 TAATACTAATTTATTATTATTCCAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTATTTAC
66 TAATACTAATTTATTAATATTTCAAAAATTAATAAG-TAAAGATTTAAAAAATAAATTTGTTTAC
* * * * * *
16578721 CAAACAAGTTTAAATAGTCATGTCCATTTGAACT-ATTATTTATTTCAAATC
130 CGAACAAGTTCAAATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATC
* * * **
16578772 GTTATGA--TATTT-TTTTATTATAAAATAATTGTTTCTATTCATACAAAATTATTC-AGAATAA
1 GTTATGACCT-TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGA-AATAA
* * * * *
16578833 AATAATACCAATTTATTAGTATTTCAAAAATTAATAAG----GATTT-TAAAATAAATGTGTTTT
64 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTTA
* * * * * * *
16578893 TCGAAGC-AGTTCAAATAGCTAAGACTATTAGAACAATTATCTATTCCAAATT
129 CCGAA-CAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
* * ** * * * * *
16578945 ATTCTGATATTTTGTTTAGTCAAAAAATAATTGTTTC-AGTTCATACATGCTTATTC-ACAATAT
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTCGA-AATAA
* * * *
16579008 AATAATACTAATTTATTAAAATTT-AGAAAATTAATAAG--AA-ATTT-TAAAA-AAATCTATTT
64 AATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTT
* * * * *
16579067 ATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATT
128 ACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
* * * * * * * * *
16579120 GTTATGACCTTTTATTTTATCATAAAACAACTATTTCAATACATAAAAG-TTTTTCCAAAATAAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATT-CGAAATAAA
* ** * * * *
16579184 ATAATATTGCTTTATTAATATTTCAAAAATTAAGAAGTTAGAGTTTTAAAAAATAAATTAGTTTA
65 ATAATACTAATTTATTAATATTTCAAAAATTAATAAG-TAAAGATTTAAAAAATAAATTTGTTTA
* * * *
16579249 TC-AA-AATATTCAAATAATTATG-GTCATTTGAATAATTATCTATTTCAAATC
129 CCGAACAA-GTTCAAATAGTTATGACT-ATTTGAATAATTATCTATTTCAAATC
* * * * *
16579300 GTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTCGAAATAAA
* * *
16579364 ATAATACTAATTTACTAATATTTCAAAAATTAAT-A--AAAGATTTAAAAAGTTAATTTGTTTAC
65 ATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTTAC
* * * * *
16579426 TGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATT
130 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
* * * * * * *
16579477 GTTATAACCTTTTGTTATCTTATAAAACAATTATTTCTATTCACACAAG-TTCATTCGAAATAGA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT-ATTCGAAATAAA
* * * *
16579541 ATAATACTAATATAATAATATTTTAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTA
65 ATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAA-AGATTTAAAAAATAAATTTGTTTA
** * * * * * * * *
16579606 CTAAACTAGTTCAAATATTTAAGGCTATATGAACAATTCTTTATTTCAAATC
129 CCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
* * * * * *
16579658 ATTTTGACCTTTTGTTTTGTCATTAAACAATTTTTTC-ATTTCTTAGTAA-CTTATTCGAAATAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATA-CAAGCTTATTCGAAATAA
* * * * * *
16579721 AGTAAAACAAATTTATTAATATTTCAAAACTTAATAAGCAAGAGATTTAAAAAA-CAATTTAGTT
64 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAA-AGATTTAAAAAATAAATTT-GTT
* * *
16579785 TGCCTAAC-AGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATC
127 TACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
*** * * * * * * * *
16579838 GTTATGTTATTTTATTTTGTCATAAAACAAATGTTTTTGTACATAAAAGTTTGTTCGAAATAAAA
1 GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAA
* ** * *
16579903 TAATATTAATTTATTAATATTTTGAAAATTAAGAAG--AA-ATTTAAAAAGTAAA
66 TAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAGATTTAAAAAATAAA
16579955 ACTATTTGAA
Statistics
Matches: 1498, Mismatches: 319, Indels: 152
0.76 0.16 0.08
Matches are distributed among these distances:
163 4 0.00
164 102 0.07
165 10 0.01
166 1 0.00
167 3 0.00
168 4 0.00
169 7 0.00
170 2 0.00
171 1 0.00
173 55 0.04
174 16 0.01
175 194 0.13
176 52 0.03
177 124 0.08
178 6 0.00
179 89 0.06
180 247 0.16
181 447 0.30
182 126 0.08
183 8 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (180 bp):
GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAA
TAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTTACC
GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATC
Found at i:16578395 original size:164 final size:164
Alignment explanation
Indices: 16578207--16578514 Score: 402
Period size: 164 Copynumber: 1.9 Consensus size: 164
16578197 AACAAGTTCA
*
16578207 AATAGTTATGACTATCAAAATAATTATCTATTTCAAAACAATATGACCATTTGTTTTGTCATAAA
1 AATAGTTATGACTATCAAAATAATTATCTATTTCAAAACAATATGACAATTTGTTTTGTCATAAA
* * * * ***
16578272 ATAATTAGTGT-TGTTCATGCACGCTTATTTTGAATAAAATAATATAAGTTTATTAAAACTCCAA
66 ACAATTA-TGTCTATTCATACAAGCTTATTCAAAATAAAATAATATAAGTTTATTAAAACTCCAA
16578336 AAATTAATAAATAAATATGTTTTTTGAACACATTC
130 AAATTAATAAATAAATATGTTTTTTGAACACATTC
*** * **
16578371 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACAATTTGTTTTGTCATAAA
1 AATAGTTATGACTATCAAAATAATTATCTATTTCAAAACAATATGACAATTTGTTTTGTCATAAA
* * * * * * *
16578436 CCAATTATTTCTATTCATACAAGCTTATTCAAAATAAAATAATATTAGTTTATTAATATTTCTAA
66 ACAATTATGTCTATTCATACAAGCTTATTCAAAATAAAATAATATAAGTTTATTAAAACTCCAAA
*
16578501 AATTAATAAGTAAA
131 AATTAATAAATAAA
16578515 AGATTTAAAT
Statistics
Matches: 121, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
163 2 0.02
164 119 0.98
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (164 bp):
AATAGTTATGACTATCAAAATAATTATCTATTTCAAAACAATATGACAATTTGTTTTGTCATAAA
ACAATTATGTCTATTCATACAAGCTTATTCAAAATAAAATAATATAAGTTTATTAAAACTCCAAA
AATTAATAAATAAATATGTTTTTTGAACACATTC
Found at i:16579041 original size:354 final size:352
Alignment explanation
Indices: 16578371--16579947 Score: 1074
Period size: 357 Copynumber: 4.4 Consensus size: 352
16578361 GAACACATTC
* * * * *
16578371 AATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATCGTTATGACAATTTGTTTTGTCATAA
1 AATAGTCATGACCATTTGAACT-ATTATCTATTTCAAATCGTTATGACTATTTATTTTATCATAA
* ** * *
16578435 ACCAATTATTTCTATTCATACAAGCTTATTCAAAATAAAATAATATTAGTTTATTAATATTTCTA
65 AACAATTATTTCTATTCATACAAAATTATTCAAAATAAAATAATATTAATTTATTAATATTTCAA
* * ** *
16578500 AAATTAATAAGTAAAAGATTTAAATAATAAATTTGTTTATCGAGCAAGTTCAAATAGTTATTAGT
130 AAATTAATAAG----AGATTTAAATAATAAATGTGTTTATCGAGCAAGTTCAAATAGCTAAGACT
* * * * *
16578565 ATTTGAAAAATTATATATTTCAAATCTTTATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTA
191 ATTAGAAAAATTATATATTCCAAATCTTTATGATATTTTGTTTAGTCAAAAAATAATTGTTTCTA
* *** **
16578630 TTCACACAAGTTTATTTGGAATAAAATAATACTAATTTATTATTATTCCAAAAATTAATAAGTTA
256 TTCACACAAGCTTATTCACAATAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAG--A
*
16578695 GAGATTTAAAAAATAAATCTATTTACCAAACAAGTTTA
319 -A-ATTT-AAAAA-AAATCTATTTACCAAACAAGTTCA
* * *
16578733 AATAGTCATGTCCATTTGAACTATTATTTATTTCAAATCGTTATGA-TATTT-TTTTATTATAAA
1 AATAGTCATGACCATTTGAACTATTATCTATTTCAAATCGTTATGACTATTTATTTTATCATAAA
* * * ** *
16578796 ATAATTGTTTCTATTCATACAAAATTATTCAGAATAAAATAATACCAATTTATTAGTATTTCAAA
66 ACAATTATTTCTATTCATACAAAATTATTCAAAATAAAATAATATTAATTTATTAATATTTCAAA
* *
16578861 AATTAATAAG-GATTTTAA-AATAAATGTGTTTTTCGAAGC-AGTTCAAATAGCTAAGACTATTA
131 AATTAATAAGAGATTTAAATAATAAATGTGTTTATCG-AGCAAGTTCAAATAGCTAAGACTATTA
* * *
16578923 GAACAATTATCTATTCCAAAT-TATTCTGATATTTTGTTTAGTCAAAAAATAATTGTTTC-AGTT
195 GAAAAATTATATATTCCAAATCT-TTATGATATTTTGTTTAGTCAAAAAATAATTGTTTCTA-TT
* * * *
16578986 CATACATGCTTATTCACAATATAATAATACTAATTTATTAAAATT-TAGAAAATTAATAAGAAAT
258 CACACAAGCTTATTCACAATAAAATAATACTAATTTATTAAAATTCCA-AAAATTAATAAGAAAT
* * * *
16579050 TTTAAAAAAATCTATTTATCGAATAAGTTCA
322 TTAAAAAAAATCTATTTACCAAACAAGTTCA
* * * * *
16579081 AATAGTTATGACTATTTGAACAATTATCTATTTAAAATTGTTATGACCT-TTTATTTTATCATAA
1 AATAGTCATGACCATTTGAACTATTATCTATTTCAAATCGTTATGA-CTATTTATTTTATCATAA
* * * * * **
16579145 AACAACTATTTCAATACATA-AAAGTTTTTCCAAAATAAAATAATATTGCTTTATTAATATTTCA
65 AACAATTATTTCTATTCATACAAAATTATT-CAAAATAAAATAATATTAATTTATTAATATTTCA
* * * * ** *
16579209 AAAATTAAGAAGTTAGAGTTTTAAAAAATAAAT-TAGTTTATC-A-AAATATTCAAATAATTATG
129 AAAATTAATAAG--AGA--TTTAAATAATAAATGT-GTTTATCGAGCAA-GTTCAAATAGCTAAG
* * * * * * * * *
16579271 -GTCATTTGAATAATTATCTATTTCAAATCGTTATGA-ACTTTTGTTTTGTCATAAAACAATTGT
188 ACT-ATTAGAAAAATTATATATTCCAAATCTTTATGATA-TTTTGTTTAGTCAAAAAATAATTGT
* * * *** * * *
16579334 TTTTCA-TCATACAAGCCTATTTGGAATAAAATAATACTAATTTACTAATATTTCAAAAATTAAT
251 TTCT-ATTCACACAAGCTTATTCACAATAAAATAATACTAATTTATTAAAATTCCAAAAATTAAT
* * * ** *
16579398 AA-AAGATTTAAAAAGTTAATTTGTTTACTGAACCAGTTCA
315 AAGAA-ATTTAAAAA--AAATCTATTTACCAAACAAGTTCA
* * * * * * * *
16579438 AATAGTTATGACTATTTGAACAATTATATATTTCAAATTGTTATAAC-CTTT-TGTTATCTTATA
1 AATAGTCATGACCATTTGAACTATTATCTATTTCAAATCGTTATGACTATTTATTTTATC--ATA
* * * * * * * *
16579501 AAACAATTATTTCTATTCACAC-AAGTTCATTCGAAATAGAATAATACTAATATAATAATATTTT
64 AAACAATTATTTCTATTCATACAAAATT-ATTCAAAATAAAATAATATTAATTTATTAATATTTC
* * * * * **
16579565 AAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTA-CTAAACTAGTTCAAATATTTAAG
128 AAAAA-T--T-AATAAGAGATTTAAATAATAAATGTGTTTATC-GAGCAAGTTCAAATAGCTAAG
* * * * * ** * ** * *
16579629 GCTA-TATGAACAATTCTTTATTTCAAATCATTT-TGACCTTTTGTTTTGTCATTAAACAATTTT
188 ACTATTA-GAAAAATTATATATTCCAAATC-TTTATGATATTTTGTTTAGTCAAAAAATAATTGT
** * * * * * * *
16579692 TTC-ATTTCTTAGTAA-CTTATTCGA-AATAAAGTAAAACAAATTTATTAATATTTCAAAACTTA
251 TTCTA-TTCACA-CAAGCTTATTC-ACAATAAAATAATACTAATTTATTAAAATTCCAAAAATTA
* * *
16579754 ATAAGCAAGAGATTTAAAAAACAATTTAGTTTGCCTAAC-AGTTCA
313 ATAAG--A-A-ATTTAAAAAA-AATCTA-TTTACCAAACAAGTTCA
* * * * *
16579799 AATAATTATGACTATTTGAA-TAATTATCTATTTCAAATCGTTATG-TTATTTTATTTTGTCATA
1 AATAGTCATGACCATTTGAACT-ATTATCTATTTCAAATCGTTATGACTA-TTTATTTTATCATA
* * * * * * * * *
16579862 AAACAAATGTTTTTGTACATA-AAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTTT
64 AAACAATTATTTCTATTCATACAAA-ATTATTCAAAATAAAATAATATTAATTTATTAATATTTC
* * *
16579926 GAAAATTAAGAAGAAATTTAAA
128 AAAAATTAATAAGAGATTTAAA
16579948 AAGTAAAACT
Statistics
Matches: 979, Mismatches: 176, Indels: 125
0.76 0.14 0.10
Matches are distributed among these distances:
348 59 0.06
349 14 0.01
350 69 0.07
351 1 0.00
352 1 0.00
353 5 0.01
354 139 0.14
355 141 0.14
356 20 0.02
357 149 0.15
358 112 0.11
359 9 0.01
360 76 0.08
361 115 0.12
362 63 0.06
363 6 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (352 bp):
AATAGTCATGACCATTTGAACTATTATCTATTTCAAATCGTTATGACTATTTATTTTATCATAAA
ACAATTATTTCTATTCATACAAAATTATTCAAAATAAAATAATATTAATTTATTAATATTTCAAA
AATTAATAAGAGATTTAAATAATAAATGTGTTTATCGAGCAAGTTCAAATAGCTAAGACTATTAG
AAAAATTATATATTCCAAATCTTTATGATATTTTGTTTAGTCAAAAAATAATTGTTTCTATTCAC
ACAAGCTTATTCACAATAAAATAATACTAATTTATTAAAATTCCAAAAATTAATAAGAAATTTAA
AAAAAATCTATTTACCAAACAAGTTCA
Found at i:16579772 original size:538 final size:529
Alignment explanation
Indices: 16577879--16579954 Score: 1641
Period size: 538 Copynumber: 3.9 Consensus size: 529
16577869 TTGTAAACAG
* * * * * * * ** *
16577879 AATTGTTATGACTTTTTGTTTTGTAATAAAACAATTGTTTTTGTTCATGCAAGCTTATTTGGATT
1 AATTGTTATGACATTTTGTTATCT-ATAAAACAATTATTTCTATTCATACAAGCTTA-TTCAAAT
* * * * *
16577944 AAAATAATATTAATTTATTAATATTTTGACAATTAATAAGTGAA-AGATTTAAAAAATAAATATG
64 AAAATAATACTAATTTATTAATATTTTAAAAATTAATAAAT-AAGAGATTTAAAAAATAAATTTG
* * * * * ** * * * *
16578008 TTTA-CCAAATAAATTCAAATAGTCAAGATTATTTGAATAATTATCTATTTCAAATAATTGTGAC
128 TTTATCGAACT-AGTTCAAATATTTAAGGCTATTTGAACAATTATATATTTCAAAT-CTTTTGAC
* * * * * * * * * *
16578072 CTTCTATTTTGTAATAAAATAATTGTTTTAGTTAACAT-AAGCTTATTTGAAATAAAATAGCT-C
191 CTTTTGTTTTGTCATAAAACAATTATTTCA-TT-TCATAAAACTTATTCGAAATAAAATA-ATAC
* * * * * * *
16578135 TAATTTATTAATATTCCAAAAATTAATGAGTAAGAGAATTAAAAAAATGAATTTGTTTAGCTAAC
253 TAATTTATTAATATTTCAAAAATTAATAAGTTAGAG-ATTTAAAAAATAAATTAGTTTA-CCAA-
* * * *** * ** *
16578200 AAGTTCAAATAGTTATGACTATCAAAATAATTATCTATTTCAAAACAATATGACCATTTGTTTTG
315 AAATTCAAATAATTATGTC-ATTTGAATAATTATCTATTTCAAATCGTTATGA--ATTTTTTTTG
* * * * * **
16578265 TCATAAAATAATTAGTGTTGT-TCATGCACGCTTATTTTGAATAAAATAATA-TAAGTTTATTAA
377 TCATAAAACAATT-GT-TTTTATCATACAAGATTATTCGGAATAAAATAATACTAA-TTTATTAA
* * * *
16578328 AACTCCAAAAATTAAT--AA-A--T--AAA-T--ATGT-TTT-TTGAACACA-TTC-AATAGTTA
439 TATTTCAAAAATTAATAAAAGATTTAAAAAGTAAATGTGTTTCTCGAAC-CAGTTCAAATAGTTA
*
16578379 TGACTATTTGAATAATTATCTATTTCA
503 TGACTATTTGAACAATTATCTATTTCA
* * * * *
16578406 AATCGTTATGACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCAAAAT
1 AATTGTTATGACATTTTGTTATCT-ATAAAACAATTATTTCTATTCATACAAGCTTATTC-AAAT
* * * * *
16578471 AAAATAATATTAGTTTATTAATATTTCT-AAAATTAATAAGTAAAAGATTTAAATAATAAATTTG
64 AAAATAATACTAATTTATTAATATTT-TAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTG
* * * *
16578535 TTTATCGAGCAAGTTCAAATAGTTATTA-G-TATTTGAAAAATTATATATTTCAAATCTTTATGA
128 TTTATCGAACTAGTTCAAATA-TT-TAAGGCTATTTGAACAATTATATATTTCAAATCTTT-TGA
* * * * ** * *
16578598 TCTTTTGTTTTGTCATAAAATAATTGTTTC-TATTCACACAAGTTTATTTGGAATAAAATAATAC
190 CCTTTTGTTTTGTCATAAAACAATTATTTCAT-TTCATA-AAACTTATTCGAAATAAAATAATAC
* *
16578662 TAATTTATTATTATTCCAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTA-TTTACCAAAC
253 TAATTTATTAATATTTCAAAAATTAATAAGTTAGAGATTTAAAAAATAAAT-TAGTTTACCAAA-
* * * *
16578726 AAGTTTAAATAGTCATGTCCATTTGAACT-ATTATTTATTTCAAATCGTTATGATATTTTTTTAT
316 AA-TTCAAATAATTATGT-CATTTGAA-TAATTATCTATTTCAAATCGTTATGA-ATTTTTTT-T
* * * * * *
16578790 -T-ATAAAATAATTGTTTCTATTCATACAAAATTATTCAGAATAAAATAATACCAATTTATTAGT
376 GTCATAAAACAATTGTTTTTA-TCATACAAGATTATTCGGAATAAAATAATACTAATTTATTAAT
* * * * * *
16578853 ATTTCAAAAATTAAT-AAGGATTTTAAAA-TAAATGTGTTTTTCGAAGCAGTTCAAATAGCTAAG
440 ATTTCAAAAATTAATAAAAGATTTAAAAAGTAAATGTGTTTCTCGAACCAGTTCAAATAGTTATG
* *
16578916 ACTATTAGAACAATTATCTATTCCA
505 ACTATTTGAACAATTATCTATTTCA
* * * * * * *
16578941 AATTATTCTGATATTTTGTTTAGTC-AAAAAATAATTGTTTC-AGTTCATACATGCTTATTCACA
1 AATTGTTATGACATTTTG-TTA-TCTATAAAACAATTATTTCTA-TTCATACAAGCTTATTCA-A
* * * * *
16579004 ATATAATAATACTAATTTATTAA-AATTTAGAAAA-T--T-AATAAGAAATTT-TAAAA-AAATC
62 ATAAAATAATACTAATTTATTAATATTTTA-AAAATTAATAAATAAGAGATTTAAAAAATAAATT
* * * * * *
16579062 TATTTATCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAAT-TGTTAT
126 TGTTTATCGAACT-AGTTCAAATATTTAAGGCTATTTGAACAATTATATATTTCAAATCT-TT-T
* * * * * * * *
16579125 GACCTTTTATTTTATCATAAAACAACTATTTCAATACATAAAAGTTTTTCCAAAATAAAATAATA
188 GACCTTTTGTTTTGTCATAAAACAATTATTTCATTTCATAAAACTTATT-CGAAATAAAATAATA
* ** * * *
16579190 TTGCTTTATTAATATTTCAAAAATTAAGAAGTTAGAGTTTTAAAAAATAAATTAGTTTATCAAAA
252 CTAATTTATTAATATTTCAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTAGTTTACCAAAA
16579255 TATTCAAATAATTATGGTCATTTGAATAATTATCTATTTCAAATCGTTATGAACTTTTGTTTTGT
317 -ATTCAAATAATTAT-GTCATTTGAATAATTATCTATTTCAAATCGTTATGAA-TTTT-TTTTGT
** * *
16579320 CATAAAACAATTGTTTTTCATCATACAAGCCTATTTGGAATAAAATAATACTAATTTACTAATAT
378 CATAAAACAATTGTTTTT-ATCATACAAGATTATTCGGAATAAAATAATACTAATTTATTAATAT
* *
16579385 TTCAAAAATTAATAAAAGATTTAAAAAGTTAATTTGTTTACT-GAACCAGTTCAAATAGTTATGA
442 TTCAAAAATTAATAAAAGATTTAAAAAGTAAATGTGTTT-CTCGAACCAGTTCAAATAGTTATGA
*
16579449 CTATTTGAACAATTATATATTTCA
506 CTATTTGAACAATTATCTATTTCA
* * *
16579473 AATTGTTATAACCTTTTGTTATCTTATAAAACAATTATTTCTATTCACACAAG-TTCATTCGAAA
1 AATTGTTATGACATTTTGTTATC-TATAAAACAATTATTTCTATTCATACAAGCTT-ATTC-AAA
* * *
16579537 TAGAATAATACTAATATAATAATATTTTAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTG
63 TAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTG
* * * *
16579602 TTTA-CTAAACTAGTTCAAATATTTAAGGCTATATGAACAATTCTTTATTTCAAATCATTTTGAC
128 TTTATC-GAACTAGTTCAAATATTTAAGGCTATTTGAACAATTATATATTTCAAATC-TTTTGAC
* * * * * * *
16579666 CTTTTGTTTTGTCATTAAACAATTTTTTCATTTCTTAGTAACTTATTCGAAATAAAGTAAAACAA
191 CTTTTGTTTTGTCATAAAACAATTATTTCATTTCATA-AAACTTATTCGAAATAAAATAATACTA
* ** * * * * *
16579731 ATTTATTAATATTTCAAAACTTAATAAGCAAGAGATTTAAAAAACAATTTAGTTTGCCTAACAGT
255 ATTTATTAATATTTCAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTAGTTTACC-AAAAAT
* *
16579796 TCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGTTATTTTATTTTGTCAT
319 TCAAATAATTATGTC-ATTTGAATAATTATCTATTTCAAATCGTTATG-AATTTT-TTTTGTCAT
* * * * * * * *
16579861 AAAACAAATGTTTTTGTACATAAAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTTT
381 AAAACAATTGTTTTTAT-CATACAAGATTATTCGGAATAAAATAATACTAATTTATTAATATTTC
* *
16579926 GAAAATTAAGAAGAA-ATTTAAAAAGTAAA
445 AAAAATTAATAA-AAGATTTAAAAAGTAAA
16579955 ACTATTTGAA
Statistics
Matches: 1240, Mismatches: 231, Indels: 145
0.77 0.14 0.09
Matches are distributed among these distances:
522 3 0.00
523 2 0.00
524 56 0.05
525 18 0.01
526 63 0.05
527 229 0.18
528 62 0.05
529 153 0.12
530 74 0.06
531 26 0.02
532 117 0.09
533 15 0.01
534 13 0.01
535 97 0.08
536 13 0.01
537 9 0.01
538 274 0.22
539 15 0.01
540 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (529 bp):
AATTGTTATGACATTTTGTTATCTATAAAACAATTATTTCTATTCATACAAGCTTATTCAAATAA
AATAATACTAATTTATTAATATTTTAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTT
ATCGAACTAGTTCAAATATTTAAGGCTATTTGAACAATTATATATTTCAAATCTTTTGACCTTTT
GTTTTGTCATAAAACAATTATTTCATTTCATAAAACTTATTCGAAATAAAATAATACTAATTTAT
TAATATTTCAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTAGTTTACCAAAAATTCAAATA
ATTATGTCATTTGAATAATTATCTATTTCAAATCGTTATGAATTTTTTTTGTCATAAAACAATTG
TTTTTATCATACAAGATTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATA
AAAGATTTAAAAAGTAAATGTGTTTCTCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTA
TCTATTTCA
Found at i:16579831 original size:16 final size:17
Alignment explanation
Indices: 16579799--16579831 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16579789 TAACAGTTCA
16579799 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
16579817 AATAATTAT-CTATTT
1 AATAATTATACTATTT
16579832 CAAATCGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:16580044 original size:146 final size:144
Alignment explanation
Indices: 16579809--16580079 Score: 348
Period size: 146 Copynumber: 1.9 Consensus size: 144
16579799 AATAATTATG
* ** *
16579809 ACTATTTGAATAATTATCTATTTCAAATCGTTATGTTATTTTATTTTGTCATAAAACAAATGTTT
1 ACTATTTGAATAATTATCTATTTCAAATCATTATGCCATTTTA-TTTGTCATAAAACAAATATTT
* * * *
16579874 TTGTACATAAAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAG
65 CTGTACATAAAAGTTTATTCGAAATAAAATAATACTAATTTATCAATATTTTG-AAATTAAGAAG
16579939 AAATTTAAAAAGTAAA
129 AAATTTAAAAAGTAAA
* * *
16579955 ACTATTTGAATAATTATTTATTTCAAATCATTATGACCATTTGTA-TTGTCATAAAATAATTATT
1 ACTATTTGAATAATTATCTATTTCAAATCATTATG-CCATTT-TATTTGTCATAAAACAAATATT
* * * *
16580019 TCTGTTCAT-ACAGTCTTATTTGAAATAAAGTAATACTAATTTATCAATATTTTGAAATTAA
64 TCTGTACATAAAAGT-TTATTCGAAATAAAATAATACTAATTTATCAATATTTTGAAATTAA
16580080 TAAGTAATAG
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
145 11 0.10
146 90 0.84
147 4 0.04
148 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (144 bp):
ACTATTTGAATAATTATCTATTTCAAATCATTATGCCATTTTATTTGTCATAAAACAAATATTTC
TGTACATAAAAGTTTATTCGAAATAAAATAATACTAATTTATCAATATTTTGAAATTAAGAAGAA
ATTTAAAAAGTAAA
Found at i:16580244 original size:326 final size:325
Alignment explanation
Indices: 16579630--16580275 Score: 773
Period size: 326 Copynumber: 2.0 Consensus size: 325
16579620 ATATTTAAGG
* * * * * *
16579630 CTATATGAACAATTCTTTATTTCAAATCATTTTGACCTTTTGTTTTGTCATTAAACAATTTTTTC
1 CTATATGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAACAATTATTTC
* *
16579695 ATTTCTTAGTAACTTATTCGAAATAAAGTAAAACAAATTTATTAATATTTCAAAACTTAATAAGC
66 ATTTCTCAGT-ACTTATTCGAAATAAAGTAAAACAAATTTATCAATATTTCAAAACTTAATAAGC
* * * * *
16579760 AAGAGATTTAAAAAACAATTTAGTTTGCCTAACAGTTCAAATAATTATGACTATTTGAATAATTA
130 AAGAGATTTAAAAAACAATTCAATTAGCCTAACAATGCAAATAATTATGACTATTTGAATAATTA
* ** * * *
16579825 TCTATTTCAAATCGTTATGTTATTTTATTTTGTCATAAAACAAATGTTTTTGTACATAAAAGTTT
195 TCTATTTCAAATCATTATGACATTTTATTTTATCACAAAACAAATGTTTTTGTACATAAAAGCTT
* * *
16579890 GTTCGAAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGAAATTTAAAAAGTAAA
260 ATTCGAAATAAAATAATATTAATTTATTAATATTCTAAAAATTAAGAAGAAATTTAAAAAGTAAA
16579955 A
325 A
* * *
16579956 CTATTTGAATAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAATAATTATTTC
1 CTATATGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAACAATTATTTC
* * * **
16580021 -TGTTCATACAGT-CTTATTTGAAATAAAGTAATACTAATTTATCAATATTTTGAAA-TTAATAA
66 AT-TTC-T-CAGTACTTATTCGAAATAAAGTAAAACAAATTTATCAATATTTCAAAACTTAATAA
* * * * *
16580083 GTAATAGATTTAAAAAATGAA-TCAATTAGCCTGACCAATGCAAATAGTTATGACTATTTGAATA
128 GCAAGAGATTTAAAAAA-CAATTCAATTAGCCT-AACAATGCAAATAATTATGACTATTTGAATA
* * * **
16580147 ATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCACAAAACAATTGTTTTTGT-CTATACT
191 ATTATCTATTTCAAATCATTATGACATTTTATTTTATCACAAAACAAATGTTTTTGTAC-ATAAA
* * * * *
16580211 AGCTTATTTGAAATAATATAAT-TCTATTTTATTAATATTCTAAAAATTAATAAGAGATTTAAAA
255 AGCTTATTCGAAATAAAATAATAT-TAATTTATTAATATTCTAAAAATTAAGAAGAAATTTAAAA
16580275 A
319 A
16580276 ATGAATCTAT
Statistics
Matches: 268, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
325 33 0.12
326 231 0.86
327 1 0.00
328 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (325 bp):
CTATATGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAACAATTATTTC
ATTTCTCAGTACTTATTCGAAATAAAGTAAAACAAATTTATCAATATTTCAAAACTTAATAAGCA
AGAGATTTAAAAAACAATTCAATTAGCCTAACAATGCAAATAATTATGACTATTTGAATAATTAT
CTATTTCAAATCATTATGACATTTTATTTTATCACAAAACAAATGTTTTTGTACATAAAAGCTTA
TTCGAAATAAAATAATATTAATTTATTAATATTCTAAAAATTAAGAAGAAATTTAAAAAGTAAAA
Found at i:16580334 original size:16 final size:17
Alignment explanation
Indices: 16580302--16580334 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16580292 AACAAGTATA
16580302 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
16580320 AATAATTAT-CTATTT
1 AATAATTATACTATTT
16580335 CTAATCACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:16580537 original size:181 final size:177
Alignment explanation
Indices: 16579955--16580539 Score: 601
Period size: 177 Copynumber: 3.3 Consensus size: 177
16579945 AAAAAGTAAA
* * * * * * *
16579955 ACTATTTGAATAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCATAAAATAATTATTT
1 ACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGCCCTAAAACAAAT-TTT
* * * *
16580020 CTGTTCATACAGTCTTATTTGAAATAAAGTAATACTAATTTATCAATATTTTGAAATTAATAAGT
65 CTATTCATACAG-CTTATTTGAAATAAAATAATACTAATTTATTAATATTTAGAAA-TAATAAGT
* * * * ** *
16580085 AATAGATTTAAAAAATGAATC-AATTAGCCTGACCAA-TGCAAATAGTTATG
128 AAAAGATTTAAAAAATGAATCTATTTA--TTGAACAAGTATAAATAATTATG
* *
16580135 ACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCAC-AAAAC-AATTGT
1 ACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT-GCCCTAAAACAAATT-T
* * * * *
16580198 T-TTTGTCTATACTAGCTTATTTGAAATAATATAATTCTATTTTATTAATATTCTA-AAA-ATTA
64 TCTAT-TC-ATAC-AGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TAGAAATAATA
* **
16580260 A-TAAGAGATTTAAAAAATGAATCTATTTATCAAACAAGTATAAATAATTATG
125 AGTAAAAGATTTAAAAAATGAATCTATTTATTGAACAAGTATAAATAATTATG
* * *
16580312 ACTATTTGAATAATTATCTATTTCTAATCACTATAACCTTTTGTTTTGCCCTAAAACAAAATTTT
1 ACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGCCCTAAAAC-AAATTTT
* * *
16580377 CTATTCATACAAGCTTATTTCAAATAAAATTATACAAATTTATTAATATTTAGACAACTAATAAG
65 CTATTCATAC-AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTAGA-AA-TAATAAG
* * *
16580442 TAAAAGATTTAAAAAATAAATCTATTTATTGAATAAGTTTAAATAATTATG
127 TAAAAGATTTAAAAAATGAATCTATTTATTGAACAAGTATAAATAATTATG
* * ** *
16580493 ACTATTTGAACAATTATTTATTTCAAATTGTTATGACTTTTTGTTTT
1 ACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
16580540 CTCATGACAC
Statistics
Matches: 334, Mismatches: 54, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
176 8 0.02
177 119 0.36
178 17 0.05
179 12 0.04
180 91 0.27
181 87 0.26
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.42
Consensus pattern (177 bp):
ACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGCCCTAAAACAAATTTTC
TATTCATACAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTAGAAATAATAAGTAAA
AGATTTAAAAAATGAATCTATTTATTGAACAAGTATAAATAATTATG
Found at i:16580985 original size:17 final size:18
Alignment explanation
Indices: 16580954--16580995 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
16580944 CACAAATATT
*
16580954 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
16580972 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
16580989 AACTATT
1 AATTATT
16580996 TGTTATGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:16581070 original size:19 final size:19
Alignment explanation
Indices: 16581003--16581072 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 19
16580993 ATTTGTTATG
16581003 TAATATAATTATATTACATAAT
1 TAATA-AATT-TATT-CATAAT
****
16581025 TATATAAATTTATAGGCAAT
1 TA-ATAAATTTATTCATAAT
16581045 CTAATAAATTTATTCATAAT
1 -TAATAAATTTATTCATAAT
16581065 TAATAAAT
1 TAATAAAT
16581073 AATTATAAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
19 8 0.21
20 16 0.42
21 5 0.13
22 6 0.16
23 3 0.08
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (19 bp):
TAATAAATTTATTCATAAT
Found at i:16581330 original size:16 final size:15
Alignment explanation
Indices: 16581290--16581332 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
16581280 ATCTATACAG
16581290 TTATAATTAA-TTAA
1 TTATAATTAATTTAA
*
16581304 TTA-AATAAATTTAA
1 TTATAATTAATTTAA
16581318 TTATCAATTAATTTA
1 TTAT-AATTAATTTA
16581333 TAATTAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 5 0.21
14 10 0.42
16 9 0.38
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TTATAATTAATTTAA
Found at i:16582613 original size:21 final size:21
Alignment explanation
Indices: 16582589--16582629 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16582579 TGAATTGAAA
16582589 TAATTAC-ATTCAAAATAATTT
1 TAATTACTATT-AAAATAATTT
*
16582610 TAATTACTATTAGAATAATT
1 TAATTACTATTAAAATAATT
16582630 ACTATTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44
Consensus pattern (21 bp):
TAATTACTATTAAAATAATTT
Found at i:16582689 original size:9 final size:9
Alignment explanation
Indices: 16582649--16582727 Score: 53
Period size: 9 Copynumber: 8.9 Consensus size: 9
16582639 AATCATTTTG
16582649 TATTATATAT
1 TATTA-ATAT
16582659 TATTAAT-T
1 TATTAATAT
16582667 TAATT-A-AT
1 T-ATTAATAT
16582675 TA-TAATAT
1 TATTAATAT
16582683 TATTAATAT
1 TATTAATAT
16582692 TA-TACATATT
1 TATTA-ATA-T
*
16582702 TATTTAA-AA
1 TA-TTAATAT
16582711 TATTAATAT
1 TATTAATAT
*
16582720 AATTAATA
1 TATTAATA
16582728 ACATTAAAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 21
0.70 0.04 0.26
Matches are distributed among these distances:
6 1 0.02
7 2 0.04
8 15 0.27
9 26 0.46
10 9 0.16
11 1 0.02
12 2 0.04
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (9 bp):
TATTAATAT
Found at i:16584599 original size:19 final size:19
Alignment explanation
Indices: 16584562--16584599 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
16584552 TAAAGTCTAA
*
16584562 ATATTAATTATTAATCTAT
1 ATATTAATTATTAAACTAT
16584581 ATATTAA-TATTTAAACTAT
1 ATATTAATTA-TTAAACTAT
16584600 TGCAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATTAATTATTAAACTAT
Found at i:16584879 original size:22 final size:22
Alignment explanation
Indices: 16584836--16584896 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
16584826 TAATATTTAA
* * *
16584836 ATATTAATATTATATTTTAATT
1 ATATTATTATTATAATTAAATT
*
16584858 GT-TTATTTATTATAATTAAATT
1 ATATTA-TTATTATAATTAAATT
16584880 ATATTATTATT-TAATTA
1 ATATTATTATTATAATTA
16584897 TAACAATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.28
22 20 0.62
23 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATATTATTATTATAATTAAATT
Found at i:16584886 original size:16 final size:16
Alignment explanation
Indices: 16584865--16584898 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16584855 ATTGTTTATT
16584865 TATTATAATTAAATTA
1 TATTATAATTAAATTA
* *
16584881 TATTATTATTTAATTA
1 TATTATAATTAAATTA
16584897 TA
1 TA
16584899 ACAATTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTATAATTAAATTA
Found at i:16584935 original size:21 final size:21
Alignment explanation
Indices: 16584910--16584951 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
16584900 CAATTATTTT
*
16584910 AATTTTAAATTA-ATAAGTAAA
1 AATTTT-AATTATATAAATAAA
16584931 AATTTTAATTATATAAATAAA
1 AATTTTAATTATATAAATAAA
16584952 TGAGACTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
AATTTTAATTATATAAATAAA
Found at i:16585319 original size:21 final size:21
Alignment explanation
Indices: 16585294--16585346 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
16585284 CTAATATTAA
*
16585294 TATTTATAATAATTTATAAAT
1 TATTTAAAATAATTTATAAAT
*
16585315 TATTTAAAACT-ATTTATAAGT
1 TATTTAAAA-TAATTTATAAAT
16585336 TATTTAAAATA
1 TATTTAAAATA
16585347 TTATAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTTAAAATAATTTATAAAT
Found at i:16585339 original size:11 final size:11
Alignment explanation
Indices: 16585294--16585345 Score: 56
Period size: 10 Copynumber: 5.0 Consensus size: 11
16585284 CTAATATTAA
16585294 TATTTAT-AAT
1 TATTTATAAAT
*
16585304 AATTTATAAAT
1 TATTTATAAAT
*
16585315 TATTTA-AAAC
1 TATTTATAAAT
*
16585325 TATTTATAAGT
1 TATTTATAAAT
16585336 TATTTA-AAAT
1 TATTTATAAAT
16585346 ATTATAATAG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 18 0.53
11 16 0.47
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (11 bp):
TATTTATAAAT
Found at i:16585359 original size:20 final size:21
Alignment explanation
Indices: 16585305--16585352 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
16585295 ATTTATAATA
*
16585305 ATTTATAAATTATTTAAAACT
1 ATTTATAAGTTATTTAAAACT
16585326 ATTTATAAGTTATTTAAAA-T
1 ATTTATAAGTTATTTAAAACT
16585346 A-TTATAA
1 ATTTATAA
16585353 TAGTATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 6 0.23
20 2 0.08
21 18 0.69
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
ATTTATAAGTTATTTAAAACT
Found at i:16585697 original size:23 final size:25
Alignment explanation
Indices: 16585638--16585704 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 25
16585628 TCTTAATTAT
* *
16585638 TTATC-AACAAATTTAATTTTTGAA
1 TTATCAAATAAATATAATTTTTGAA
*
16585662 TTATCAAATAAATATTATTTTT-AA
1 TTATCAAATAAATATAATTTTTGAA
*
16585686 TT-TGAAATAAATATAATTT
1 TTATCAAATAAATATAATTT
16585705 AATATTTAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
23 15 0.41
24 9 0.24
25 13 0.35
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (25 bp):
TTATCAAATAAATATAATTTTTGAA
Found at i:16585711 original size:23 final size:22
Alignment explanation
Indices: 16585667--16585719 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
16585657 TTGAATTATC
* *
16585667 AAATAAATATTATTTTTAATTT
1 AAATAAATATAATTTATAATTT
16585689 GAAATAAATATAATTTA-ATATTT
1 -AAATAAATATAATTTATA-ATTT
*
16585712 AAAGAAAT
1 AAATAAAT
16585720 TATTATATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
AAATAAATATAATTTATAATTT
Found at i:16585887 original size:22 final size:21
Alignment explanation
Indices: 16585837--16585895 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
16585827 CTATTCTGAT
16585837 TTAA-TATTATTG-ATATAAC
1 TTAATTATTATTGAATATAAC
16585856 TTAATATATTATTGAATATTGAA-
1 TTAAT-TATTATTGAATA-T-AAC
*
16585879 TTAATTATTATTAAATA
1 TTAATTATTATTGAATA
16585896 ATTATTGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 4 0.12
21 8 0.24
22 14 0.41
23 6 0.18
24 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (21 bp):
TTAATTATTATTGAATATAAC
Found at i:16586080 original size:23 final size:22
Alignment explanation
Indices: 16586032--16586078 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
16586022 TTTATTGCTT
16586032 ATAAATAATAATAAATTTAATTA
1 ATAAATAATAAT-AATTTAATTA
*
16586055 ATAAATTATAAT-ATTTAA-TA
1 ATAAATAATAATAATTTAATTA
16586075 ATAA
1 ATAA
16586079 TATCATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
21 6 0.26
23 11 0.48
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
ATAAATAATAATAATTTAATTA
Found at i:16586460 original size:27 final size:31
Alignment explanation
Indices: 16586422--16586487 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
16586412 ATTTAACATA
*
16586422 ATTAA-TATTTT-ATATTATAGT-AT-AAAT
1 ATTAATTATTTTAATATTATAATAATAAAAT
* *
16586449 ATTAATTATTTAAATATTTTAATAATAAAAT
1 ATTAATTATTTTAATATTATAATAATAAAAT
16586480 ATTAATTA
1 ATTAATTA
16586488 AAATTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 5 0.16
28 5 0.16
29 8 0.25
30 2 0.06
31 12 0.38
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (31 bp):
ATTAATTATTTTAATATTATAATAATAAAAT
Found at i:16586773 original size:27 final size:29
Alignment explanation
Indices: 16586754--16586807 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
16586744 TATATATTAT
16586754 TTAAA-ATTA-TAATATTATATTATTTAA
1 TTAAATATTATTAATATTATATTATTTAA
* *
16586781 TTAAATTTTATTAATATTATGTTATTT
1 TTAAATATTATTAATATTATATTATTT
16586808 CAATATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
28 3 0.13
29 15 0.65
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (29 bp):
TTAAATATTATTAATATTATATTATTTAA
Found at i:16587563 original size:22 final size:22
Alignment explanation
Indices: 16587533--16587587 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
16587523 TAATTTGAAT
* *
16587533 TAATAAATTATTATTAATACTA-
1 TAATTAATTAATATTAATA-TAC
*
16587555 TAATTAATTAATATTTATATAC
1 TAATTAATTAATATTAATATAC
16587577 TAATTAATTAA
1 TAATTAATTAA
16587588 CTAGTTTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
TAATTAATTAATATTAATATAC
Found at i:16587572 original size:26 final size:22
Alignment explanation
Indices: 16587530--16587604 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
16587520 AAGTAATTTG
*
16587530 AATTAATAAATTATTATTAATACTAT
1 AATTAATTAATTATTA-T-ATAC--T
16587556 AATTAATTAA-TATTTATATACT
1 AATTAATTAATTA-TTATATACT
* *
16587578 AATTAATTAACTAGTT-TGTACT
1 AATTAATTAATTA-TTATATACT
16587600 AATTA
1 AATTA
16587605 CAAATTATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
22 21 0.48
23 4 0.09
24 4 0.09
25 3 0.07
26 12 0.27
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (22 bp):
AATTAATTAATTATTATATACT
Found at i:16587599 original size:22 final size:22
Alignment explanation
Indices: 16587555--16587604 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
16587545 ATTAATACTA
*
16587555 TAATTAATTAATATTTATATAC
1 TAATTAATTAATAGTTATATAC
*
16587577 TAATTAATTAACTAGTT-TGTAC
1 TAATTAATTAA-TAGTTATATAC
16587599 TAATTA
1 TAATTA
16587605 CAAATTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (22 bp):
TAATTAATTAATAGTTATATAC
Found at i:16588329 original size:28 final size:28
Alignment explanation
Indices: 16588298--16588354 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
16588288 AGTAGACAAA
*
16588298 ATATA-ATAATTATATAATATTTATATTT
1 ATATATAT-ATTATAGAATATTTATATTT
* *
16588326 ATATTTATATTGTAGAATATTTATATTT
1 ATATATATATTATAGAATATTTATATTT
16588354 A
1 A
16588355 AAAAATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.92
29 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (28 bp):
ATATATATATTATAGAATATTTATATTT
Found at i:16589024 original size:34 final size:37
Alignment explanation
Indices: 16588948--16589039 Score: 97
Period size: 36 Copynumber: 2.6 Consensus size: 37
16588938 AATCAAATAT
*
16588948 TAAT-TATATTATTAAT-ATTATTAATTTATATATAA
1 TAATATATATTATTAATAATTATTAATATATATATAA
* *
16588983 TACTATATATTATTAATAATTGTT-ATATATA-ATAA
1 TAATATATATTATTAATAATTATTAATATATATATAA
*
16589018 -AATATATGA-CATTAATAATTAT
1 TAATATAT-ATTATTAATAATTAT
16589040 ATCAGATTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
34 17 0.35
35 8 0.17
36 18 0.38
37 5 0.10
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (37 bp):
TAATATATATTATTAATAATTATTAATATATATATAA
Found at i:16589499 original size:22 final size:21
Alignment explanation
Indices: 16589469--16589510 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
16589459 TTTGTAATTT
16589469 TATTATAATATATAAT-TTAAC
1 TATTATAATAT-TAATATTAAC
16589490 TATTAATAATATTAATATTAA
1 TATT-ATAATATTAATATTAA
16589511 TAACTATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TATTATAATATTAATATTAAC
Found at i:16589508 original size:15 final size:16
Alignment explanation
Indices: 16589480--16589518 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
16589470 ATTATAATAT
16589480 ATAAT-TTAACTATTA
1 ATAATATTAACTATTA
16589495 ATAATATTAA-TATTA
1 ATAATATTAACTATTA
16589510 ATAACTATT
1 ATAA-TATT
16589519 TCAAATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATATTAACTATTA
Found at i:16589594 original size:25 final size:25
Alignment explanation
Indices: 16589552--16589599 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
16589542 TTAATTAATT
16589552 ATTATTGATAATAATAATAATATCA
1 ATTATTGATAATAATAATAATATCA
* *
16589577 ATTATT-ATATTAACTAATTATAT
1 ATTATTGATAATAA-TAATAATAT
16589600 TTGATTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (25 bp):
ATTATTGATAATAATAATAATATCA
Found at i:16590598 original size:6 final size:6
Alignment explanation
Indices: 16590582--16590681 Score: 64
Period size: 6 Copynumber: 16.2 Consensus size: 6
16590572 AAATTAGTTA
*
16590582 AATTAAT AATTAT AATTAT AATTA- ATTTA- AATTAAT AATTA- AATTTATT
1 AATT-AT AATTAT AATTAT AATTAT AATTAT AATT-AT AATTAT AA-TTA-T
* * **
16590631 AATTAT ACAGT-T AATTAT AATTAT ATAATATT AATTAT AACGAT AATTAT
1 AATTAT A-ATTAT AATTAT AATTAT A-ATTA-T AATTAT AATTAT AATTAT
16590681 A
1 A
16590682 CTAAATATTA
Statistics
Matches: 74, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
5 11 0.15
6 40 0.54
7 19 0.26
8 4 0.05
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (6 bp):
AATTAT
Found at i:16591103 original size:26 final size:30
Alignment explanation
Indices: 16591052--16591115 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 30
16591042 AATTTTTAAG
16591052 TATATTATGTATACTAAGTATAATAAT-A-T
1 TATATTATGTATA-TAAGTATAATAATAATT
*
16591081 TATATTAT-TAT-TAATTATAATAATAATT
1 TATATTATGTATATAAGTATAATAATAATT
16591109 TATATTA
1 TATATTA
16591116 ATTTCATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 12 0.38
27 1 0.03
28 11 0.34
29 8 0.25
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (30 bp):
TATATTATGTATATAAGTATAATAATAATT
Found at i:16591138 original size:21 final size:21
Alignment explanation
Indices: 16591070--16591160 Score: 66
Period size: 21 Copynumber: 4.3 Consensus size: 21
16591060 GTATACTAAG
16591070 TATAATA-ATATTAT-A-TTAT
1 TATAATATA-ATTATAAGTTAT
* *
16591089 TATTAATTATAATAATAATTTA-
1 TA-TAA-TATAATTATAAGTTAT
* *
16591111 TATTAATTTCATTATTAA-TTAT
1 TA-TAATATAATTA-TAAGTTAT
16591133 TATAATATAATTATAAGTTAT
1 TATAATATAATTATAAGTTAT
16591154 TATAATA
1 TATAATA
16591161 ATAAAATTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
19 2 0.03
20 6 0.10
21 34 0.59
22 13 0.22
23 3 0.05
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (21 bp):
TATAATATAATTATAAGTTAT
Found at i:16591174 original size:21 final size:20
Alignment explanation
Indices: 16591124--16591180 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
16591114 TAATTTCATT
16591124 ATTAATTATTATAAT-ATAA
1 ATTAATTATTATAATAATAA
*
16591143 TTATAAGTTATTATAATAATAAA
1 AT-TAA-TTATTATAATAAT-AA
16591166 ATTAATTATTA-AATA
1 ATTAATTATTATAATA
16591181 TACTAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 1 0.03
20 7 0.22
21 16 0.50
22 5 0.16
23 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
ATTAATTATTATAATAATAA
Found at i:16591802 original size:17 final size:17
Alignment explanation
Indices: 16591776--16591809 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
16591766 ATTATTTTAT
* *
16591776 TTAAATAATATTATTAA
1 TTAAACAATATAATTAA
16591793 TTAAACAATATAATTAA
1 TTAAACAATATAATTAA
16591810 ATTATAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAAACAATATAATTAA
Found at i:16593652 original size:20 final size:19
Alignment explanation
Indices: 16593629--16593672 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
16593619 AATAATTTAT
*
16593629 ATTAAAATAATATTCAATTA
1 ATTAAAATAACATT-AATTA
* *
16593649 ATTAATATAACATTTATTA
1 ATTAAAATAACATTAATTA
16593668 ATTAA
1 ATTAA
16593673 TAAATTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTAAAATAACATTAATTA
Found at i:16593806 original size:16 final size:15
Alignment explanation
Indices: 16593775--16593826 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
16593765 CTAATTTTTA
16593775 ATATAATAATATATT
1 ATATAATAATATATT
16593790 ATAGTAAT-ATATAATT
1 ATA-TAATAATAT-ATT
16593806 ATATAATTAA-ATATT
1 ATATAA-TAATATATT
*
16593821 AGATAA
1 ATATAA
16593827 ACTTATTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
15 18 0.56
16 13 0.41
17 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (15 bp):
ATATAATAATATATT
Found at i:16594367 original size:16 final size:17
Alignment explanation
Indices: 16594346--16594379 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
16594336 AATAGTCATG
16594346 TCCATTT-GAACTATTA
1 TCCATTTCGAACTATTA
*
16594362 TCCATTTCGAATTATTA
1 TCCATTTCGAACTATTA
16594379 T
1 T
16594380 GACATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (17 bp):
TCCATTTCGAACTATTA
Found at i:16596339 original size:16 final size:16
Alignment explanation
Indices: 16596320--16596358 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
16596310 AATTAATAAT
16596320 ATAATTAATTTATATA
1 ATAATTAATTTATATA
* *
16596336 ATAATCATTTTATATA
1 ATAATTAATTTATATA
*
16596352 ATTATTA
1 ATAATTA
16596359 TATAATTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
ATAATTAATTTATATA
Found at i:16596361 original size:11 final size:11
Alignment explanation
Indices: 16596345--16596369 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16596335 AATAATCATT
16596345 TTATATAATTA
1 TTATATAATTA
16596356 TTATATAATTA
1 TTATATAATTA
16596367 TTA
1 TTA
16596370 ATATTACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TTATATAATTA
Found at i:16596553 original size:23 final size:23
Alignment explanation
Indices: 16596509--16596567 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
16596499 ACTTATTATT
* *
16596509 TAATATAACTAAAATTATTAATA
1 TAATATAAATAAAATTAATAATA
*
16596532 TAATAATAAATAAAA-TAATAATT
1 TAAT-ATAAATAAAATTAATAATA
*
16596555 TAAT-TAAACAAAA
1 TAATATAAATAAAA
16596568 AGTCAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 8 0.26
23 14 0.45
24 9 0.29
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (23 bp):
TAATATAAATAAAATTAATAATA
Found at i:16596934 original size:21 final size:21
Alignment explanation
Indices: 16596899--16596944 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
16596889 AATTAAGTTT
*
16596899 AATAAATTATTAAAATAATTG
1 AATAAATTATTAAAAAAATTG
*
16596920 AATAAATTATTAAAAAAATTT
1 AATAAATTATTAAAAAAATTG
16596941 AATA
1 AATA
16596945 TTTTTGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AATAAATTATTAAAAAAATTG
Found at i:16597120 original size:19 final size:19
Alignment explanation
Indices: 16597093--16597165 Score: 57
Period size: 19 Copynumber: 4.1 Consensus size: 19
16597083 AGTTTTAAAT
*
16597093 TATTTTAATATAATTATTA
1 TATTATAATATAATTATTA
*
16597112 TATTATAATATTATT-TT-
1 TATTATAATATAATTATTA
*
16597129 T-TTCTAATAT-ATTATTAA
1 TATTATAATATAATTATT-A
* *
16597147 TAGTATTATA-AATTATTA
1 TATTATAATATAATTATTA
16597165 T
1 T
16597166 TAACAAATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
15 3 0.07
16 10 0.23
17 1 0.02
18 5 0.12
19 24 0.56
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (19 bp):
TATTATAATATAATTATTA
Found at i:16597438 original size:4 final size:4
Alignment explanation
Indices: 16597389--16597507 Score: 59
Period size: 4 Copynumber: 28.8 Consensus size: 4
16597379 ATTGTTATTA
* * * *
16597389 AATT AAAT AAGT ATTT AATT ATATA AATAT AATT -ATT AATTT AATT AATT
1 AATT AATT AATT AATT AATT A-ATT AAT-T AATT AATT AA-TT AATT AATT
* * *
16597439 AA-T AATT AATT AATT ATATG AGATA AATT --TT AATT ATATA AATT AATTT
1 AATT AATT AATT AATT A-ATT A-ATT AATT AATT AATT A-ATT AATT AA-TT
16597488 AATTT AATT -ATGT AATT AAT
1 AA-TT AATT AAT-T AATT AAT
16597508 ACTAAACAAG
Statistics
Matches: 90, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
2 2 0.02
3 8 0.09
4 50 0.56
5 30 0.33
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:16597677 original size:26 final size:28
Alignment explanation
Indices: 16597648--16597709 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 28
16597638 ATTTTAATTC
16597648 TTATATTTAT-AA-TTTGTAAA-TAATAA
1 TTATATTTATAAATTTTGTAAACTAAT-A
*
16597674 TTATATTAATAAATTTTGTAAACTAATA
1 TTATATTTATAAATTTTGTAAACTAATA
16597702 -TATATTTA
1 TTATATTTA
16597710 AACATTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 9 0.29
27 9 0.29
28 9 0.29
29 4 0.13
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (28 bp):
TTATATTTATAAATTTTGTAAACTAATA
Found at i:16597710 original size:28 final size:25
Alignment explanation
Indices: 16597649--16597710 Score: 65
Period size: 28 Copynumber: 2.4 Consensus size: 25
16597639 TTTTAATTCT
16597649 TATATTT-ATAATTTGTAAATAATA
1 TATATTTAATAATTTGTAAATAATA
16597673 -ATTATATTAATAAATTTTGTAAACTAATA
1 TA-TAT-TTAAT-AA-TTTGTAAA-TAATA
16597702 TATATTTAA
1 TATATTTAA
16597711 ACATTAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
23 1 0.03
24 3 0.10
25 2 0.06
26 2 0.06
27 2 0.06
28 12 0.39
29 8 0.26
30 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (25 bp):
TATATTTAATAATTTGTAAATAATA
Found at i:16597845 original size:25 final size:25
Alignment explanation
Indices: 16597798--16597845 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
16597788 TTAATTAAAA
* * *
16597798 TATAAATATTTGATTAAATTATTAT
1 TATAAATAATTAATTAAACTATTAT
*
16597823 TATAAATAATTAATTATACTATT
1 TATAAATAATTAATTAAACTATT
16597846 TATTTTAAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (25 bp):
TATAAATAATTAATTAAACTATTAT
Found at i:16598278 original size:17 final size:19
Alignment explanation
Indices: 16598240--16598295 Score: 64
Period size: 17 Copynumber: 3.1 Consensus size: 19
16598230 AAATTGTTGA
16598240 TTAATAAGTATATATTCATT
1 TTAATAAGTATATATT-ATT
16598260 TTAATAA-TATATATT-TT
1 TTAATAAGTATATATTATT
**
16598277 TTAA-ATTTATATATTATT
1 TTAATAAGTATATATTATT
16598295 T
1 T
16598296 AAAATTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 1 0.03
17 14 0.42
18 3 0.09
19 8 0.24
20 7 0.21
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTAATAAGTATATATTATT
Found at i:16598296 original size:17 final size:17
Alignment explanation
Indices: 16598248--16598304 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
16598238 GATTAATAAG
* *
16598248 TATATATTCATTTTAATAA
1 TATATATT-ATTTAAAT-T
*
16598267 TATATATTTTTTAAATT
1 TATATATTATTTAAATT
16598284 TATATATTATTTAAAATT
1 TATATATTATTT-AAATT
16598302 TAT
1 TAT
16598305 TGAAGACTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
17 11 0.33
18 14 0.42
19 8 0.24
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (17 bp):
TATATATTATTTAAATT
Found at i:16599483 original size:21 final size:22
Alignment explanation
Indices: 16599445--16599504 Score: 106
Period size: 21 Copynumber: 2.8 Consensus size: 22
16599435 ATTAAATTTC
16599445 TTATTAATTAATTTAATAATAA
1 TTATTAATTAATTTAATAATAA
16599467 TTATTAATTAA-TTAATAATAA
1 TTATTAATTAATTTAATAATAA
16599488 TTATTAA-TAATTTAATA
1 TTATTAATTAATTTAATA
16599505 TTCAATTCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
20 3 0.08
21 23 0.62
22 11 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTATTAATTAATTTAATAATAA
Found at i:16599488 original size:10 final size:10
Alignment explanation
Indices: 16599457--16599504 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
16599447 ATTAATTAAT
16599457 TTAATAATAA
1 TTAATAATAA
*
16599467 TTATTAATTAA
1 TTAATAA-TAA
16599478 TTAATAATAA
1 TTAATAATAA
*
16599488 TTATTAATAA
1 TTAATAATAA
16599498 TTTAATA
1 -TTAATA
16599505 TTCAATTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
10 18 0.56
11 14 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
TTAATAATAA
Found at i:16599532 original size:43 final size:43
Alignment explanation
Indices: 16599445--16599535 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 43
16599435 ATTAAATTTC
*
16599445 TTATTAATTAATTTAATAATAATTATTAATTAATTAATAATAA
1 TTATTAATTAATTTAATAATAATTATTAATTAATAAATAATAA
* *
16599488 TTATTAA-TAATTTAATATTCAATTCATTATATT-ATAAAT-GTAA
1 TTATTAATTAATTTAATAAT-AATT-ATTA-ATTAATAAATAATAA
16599531 TTATT
1 TTATT
16599536 TTATATTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
42 11 0.26
43 19 0.45
44 9 0.21
45 3 0.07
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (43 bp):
TTATTAATTAATTTAATAATAATTATTAATTAATAAATAATAA
Found at i:16599617 original size:14 final size:14
Alignment explanation
Indices: 16599571--16599619 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
16599561 ATTAAATAAT
*
16599571 AATTTATTATTGTA
1 AATTTATTATTATA
*
16599585 AATTAATTAATAATATA
1 AATTTATT-AT--TATA
16599602 AATTTATTATTATA
1 AATTTATTATTATA
16599616 AATT
1 AATT
16599620 ATAATAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 15 0.52
15 2 0.07
16 2 0.07
17 10 0.34
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (14 bp):
AATTTATTATTATA
Found at i:16599876 original size:17 final size:16
Alignment explanation
Indices: 16599849--16599883 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
16599839 ATATTAGTCA
16599849 TATAATTAATAATAAT
1 TATAATTAATAATAAT
*
16599865 TATAACTTAATATTAAT
1 TATAA-TTAATAATAAT
16599882 TA
1 TA
16599884 AGCAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATTAATAATAAT
Found at i:16600079 original size:31 final size:31
Alignment explanation
Indices: 16600036--16600094 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
16600026 ATAGTAAATA
16600036 ATTTATATTTAATAAAATATTAA-TATTAATT
1 ATTTATATTTAATAAAATA-TAACTATTAATT
16600067 ATTTA-ATATTAATAAAATATAACTATTA
1 ATTTATAT-TTAATAAAATATAACTATTA
16600095 TATTTTATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (31 bp):
ATTTATATTTAATAAAATATAACTATTAATT
Found at i:16600165 original size:13 final size:13
Alignment explanation
Indices: 16600128--16600171 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
16600118 GATTAATAAT
*
16600128 ATAATTTCATATTCC
1 ATAATTT-ATATT-A
*
16600143 ATAATATATATTA
1 ATAATTTATATTA
16600156 ATAATTTATATTA
1 ATAATTTATATTA
16600169 ATA
1 ATA
16600172 TACAGATTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAATTTATATTA
Found at i:16600698 original size:10 final size:10
Alignment explanation
Indices: 16600683--16600800 Score: 56
Period size: 10 Copynumber: 12.1 Consensus size: 10
16600673 TTTTAGAGTT
16600683 ATAATTATTA
1 ATAATTATTA
16600693 ATAATTA-TA
1 ATAATTATTA
* *
16600702 ATTATAATTA
1 ATAATTATTA
* *
16600712 ATAAGTATAA
1 ATAATTATTA
16600722 ATAATTA-T-
1 ATAATTATTA
16600730 ATAATTA-T-
1 ATAATTATTA
16600738 ATAATT-TTAA
1 ATAATTATT-A
16600748 ATAATTTAATTA
1 ATAA-TT-ATTA
*
16600760 CTAAATTATT-
1 AT-AATTATTA
16600770 -T-ATTAACTTA
1 ATAATT-A-TTA
*
16600780 ATAATTTTTA
1 ATAATTATTA
*
16600790 AAAATTATTA
1 ATAATTATTA
16600800 A
1 A
16600801 GGATTGTTTA
Statistics
Matches: 83, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
7 3 0.04
8 16 0.19
9 10 0.12
10 37 0.45
11 6 0.07
12 7 0.08
13 4 0.05
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (10 bp):
ATAATTATTA
Found at i:16600713 original size:19 final size:17
Alignment explanation
Indices: 16600689--16600738 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
16600679 AGTTATAATT
16600689 ATTAATAATTATAATTATA
1 ATTAATAATTATAA--ATA
*
16600708 ATTAATAAGTATAAATA
1 ATTAATAATTATAAATA
16600725 ATTATATAATTATA
1 ATTA-ATAATTATA
16600739 TAATTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 7 0.25
18 8 0.29
19 13 0.46
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTAATAATTATAAATA
Found at i:16600729 original size:23 final size:24
Alignment explanation
Indices: 16600699--16600759 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 24
16600689 ATTAATAATT
16600699 ATAATTATAATTA-ATAAGTATAA
1 ATAATTATAATTATATAAGTATAA
* *
16600722 ATAATTATATAATTATATAATTTTAA
1 ATAA-T-TATAATTATATAAGTATAA
16600748 ATAATT-TAATTA
1 ATAATTATAATTA
16600760 CTAAATTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 10 0.30
24 2 0.06
25 9 0.27
26 12 0.36
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (24 bp):
ATAATTATAATTATATAAGTATAA
Found at i:16600770 original size:16 final size:15
Alignment explanation
Indices: 16600723--16600771 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
16600713 TAAGTATAAA
*
16600723 TAATTATATAATTATA
1 TAATTATA-AATTATT
* *
16600739 TAATTTTAAATAATT
1 TAATTATAAATTATT
16600754 TAATTACTAAATTATT
1 TAATTA-TAAATTATT
16600770 TA
1 TA
16600772 TTAACTTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
TAATTATAAATTATT
Found at i:16600786 original size:16 final size:16
Alignment explanation
Indices: 16600745--16600790 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
16600735 TATATAATTT
16600745 TAAATAATTTAATT-AC
1 TAAATAATTT-ATTAAC
*
16600761 TAAATTATTTATTAAC
1 TAAATAATTTATTAAC
*
16600777 TTAATAATTT-TTAA
1 TAAATAATTTATTAA
16600791 AAATTATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (16 bp):
TAAATAATTTATTAAC
Found at i:16600898 original size:22 final size:22
Alignment explanation
Indices: 16600865--16600907 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16600855 CTTTTAGTTA
*
16600865 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAATAATAT
16600887 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAATAATA
16600908 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTCAAATAATACAATAATAT
Found at i:16601374 original size:14 final size:14
Alignment explanation
Indices: 16601335--16601405 Score: 72
Period size: 14 Copynumber: 5.0 Consensus size: 14
16601325 GAATGCTAAT
*
16601335 AATTAAAATTTTTA
1 AATTAAAATATTTA
*
16601349 AATTTTAAATATTTA
1 AA-TTAAAATATTTA
16601364 AATTAAAATATTTA
1 AATTAAAATATTTA
* *
16601378 AATTATATTATTT-
1 AATTAAAATATTTA
*
16601391 AATTATCAATATTTA
1 AATTA-AAATATTTA
16601406 TTAATAAATA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
13 5 0.11
14 30 0.64
15 12 0.26
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:16601671 original size:23 final size:22
Alignment explanation
Indices: 16601641--16601707 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 22
16601631 ACACAATTTG
*
16601641 TATT-ATTATAAATTAAT-ATT
1 TATTAATTATAAATAAATAATT
16601661 ATACTTAATTATAAATAAATAATT
1 -TA-TTAATTATAAATAAATAATT
*
16601685 TATTAATTAT-ATTAAAT-ATT
1 TATTAATTATAAATAAATAATT
16601705 TAT
1 TAT
16601708 AATGAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 6 0.15
21 8 0.20
22 10 0.24
23 14 0.34
24 3 0.07
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTAATTATAAATAAATAATT
Found at i:16601951 original size:13 final size:13
Alignment explanation
Indices: 16601935--16601971 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
16601925 TGTTTAATTA
16601935 AAATTATTATATT
1 AAATTATTATATT
16601948 AAATTA-TATATT
1 AAATTATTATATT
16601960 -AATTAATTATAT
1 AAATT-ATTATAT
16601972 ATTATTAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 4 0.18
12 7 0.32
13 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
AAATTATTATATT
Found at i:16601969 original size:15 final size:15
Alignment explanation
Indices: 16601939--16601980 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
16601929 TAATTAAAAT
16601939 TATTATATTAAATTATA
1 TATTA-ATT-AATTATA
16601956 TATTAATTAATTATA
1 TATTAATTAATTATA
16601971 TATT-ATTAAT
1 TATTAATTAAT
16601981 CTACTAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.24
15 11 0.44
16 3 0.12
17 5 0.20
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTAATTAATTATA
Found at i:16602543 original size:169 final size:169
Alignment explanation
Indices: 16602239--16603235 Score: 374
Period size: 181 Copynumber: 5.7 Consensus size: 169
16602229 ATCCTGGTTA
* * * * *
16602239 TTAATCTTTCAAAAGTTAATAAATTAGTATTATTTTCTTTCGAATAAGTTTGTATGAACTAAAAC
1 TTAATCTTTCAAAAATTAATAAATTAGTATTATTTTCTATCGAATAAGCTTATATGAAC-AAAAA
** * *
16602304 AATTATTTTATGATTAAACAAAAGATCAGAATGATTTAAAATAGATAATTATTCTAATAATCTTA
65 AATTATTTTATGACAAAACAAAAGATCAGAATGATTTAAAATAGATAATTATTCAAATAATCATA
*
16602369 ACTATTTGAACTGATCAGCAAACACATTTACTTTTTAAAT
130 ACTATTAGAACTGATCAGCAAACACATTTACTTTTTAAAT
* *
16602409 TTAAT-TTTCAAAATATTATTAAATTAGTATTATTTT-TATCTGAATTAGCTTATATGATA-AAA
1 TTAATCTTTCAAAA-ATTAATAAATTAGTATTATTTTCTATC-GAATAAGCTTATATGA-ACAAA
* * * * * * *
16602471 AAAATTTTTTTTATGACAAAAC-AAAGATCATAATGATTTGAGATTA-ATATTTGTTCAAATAGT
63 AAAA-TTATTTTATGACAAAACAAAAGATCAGAATGATTT-AAAATAGATAATTATTCAAATAAT
* ** *
16602534 CATAACTATTAGAACTGCTTTG-AAAAACAGCTTTACTTTTTAAATCTCTTGCT
126 CATAACTATTAGAACTGATCAGCAAACACA--TTTACTTTTTAAA--------T
* * * * * * * * * * **
16602587 TAATAATTTTTGAAATATTAATAAAGTAGTGTTATTTTATTTC-AGATAAGTTTTTATTAATTGA
1 T--TAATCTTTCAAAAATTAATAAATTAGTATTATTTTCTATCGA-ATAAGCTTATATGAA-CAA
* * * * * * *
16602651 AACAATTATTTTATGACAAAACAAAATG-TCAAAAT-AATTATAAACAGATAATTGTTTAAATAG
62 AAAAATTATTTTATGACAAAACAAAA-GATCAGAATGATTTA-AAATAGATAATTATTCAAATAA
* * * * * * * *
16602714 TCATATCTATTTGAAATTGTTTAGTAAACAGATTTATTTTTGTAAAAT
125 TCATAACTATTAG-AACTGATCAGCAAACACATTTACTTTT-T-AAAT
** * * * *
16602762 TTCTTTCTTT-AATTTTTTGAATGTTAATAAATTAGTATTATTTTAT-TCCAAATAAGCTTGTAT
1 TT-AATCTTTCAA-------AA-ATTAATAAATTAGTATTATTTTCTAT-CGAATAAGCTTATAT
* * * * *
16602825 GAACTGAAATAATTGTTTTATGACTAAACAAAAGGAT-AGAATGATTTGAAATAGATAATTATTC
56 GAAC-AAAAAAATTATTTTATGACAAAACAAAA-GATCAGAATGATTTAAAATAGATAATTATTC
* * * * * * * *
16602889 TAATAGTCTTAACTATTTGAACTAGTTCGGCTAACATATTTA-TTTTTAAATCTCTT
119 AAATAATCATAACTATTAGAACT-GATCAGCAAACACATTTACTTTTTAAA-----T
* * * * * * * * *
16602945 ATTAATTTTTGAAATATTATTTAATTAGTGTCATTTT-AATCTGAATAAGCTTGTATGAA-AAGA
1 -TTAATCTTTCAAAAATTAATAAATTAGTATTATTTTCTATC-GAATAAGCTTATATGAACAA-A
* * * ** * * * *
16603008 AACAATTGTTGTATGACAAAA-TAAAGATCATTATGATTTGAGATAGATAATTGTTCAAATAGTC
63 AA-AATTATTTTATGACAAAACAAAAGATCAGAATGATTTAAAATAGATAATTATTCAAATAATC
* * * * * * *
16603072 ATAACTATTTGAACTGGTTTAGTAAATAGATTTAGTTTTTAAATCTCTT
127 ATAACTATTAGAACT-GATCAGCAAACACATTTACTTTTTAAA-----T
* * ** * * * * *
16603121 ATTAAT-TTTGAAAATATTAATAAATCAAAATTATTTTATTTTGAATAATC-TGTATGAACAAAA
1 -TTAATCTTTCAAAA-ATTAATAAATTAGTATTATTTTCTATCGAATAAGCTTATATGAACAAAA
* * * * ** *
16603184 ATTATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATT
64 A-AATTATTTTATGACAAAACAAAAGATCAGAATGATTTAAAATAGATAATT
16603236 GTTCTAATGG
Statistics
Matches: 634, Mismatches: 131, Indels: 118
0.72 0.15 0.13
Matches are distributed among these distances:
168 6 0.01
169 63 0.10
170 69 0.11
171 1 0.00
173 3 0.00
174 8 0.01
175 98 0.15
176 119 0.19
177 2 0.00
178 5 0.01
179 4 0.01
180 63 0.10
181 162 0.26
182 14 0.02
183 13 0.02
184 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (169 bp):
TTAATCTTTCAAAAATTAATAAATTAGTATTATTTTCTATCGAATAAGCTTATATGAACAAAAAA
ATTATTTTATGACAAAACAAAAGATCAGAATGATTTAAAATAGATAATTATTCAAATAATCATAA
CTATTAGAACTGATCAGCAAACACATTTACTTTTTAAAT
Found at i:16603374 original size:180 final size:181
Alignment explanation
Indices: 16602154--16604162 Score: 1623
Period size: 180 Copynumber: 11.2 Consensus size: 181
16602144 AATTCACAAT
* * * * *
16602154 GATTTTAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAATAAACAAATTTAG
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTA-
* * * ** * * * *
16602219 TTTTTCAAATATCCTGGTTATTAATCTTTCAAAA-GTTAATAAATTAGTATTATTTTCTTTCGAA
65 TTTTTTAAATCTCTTACTTATTAAT-TTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAA
* * ** * * *
16602283 TAAGTTTGTATGAACTA-AAACAATTATTTTATGATTAAACAAAAGATCAGAAT
129 TAAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * * * * *
16602336 GATTTAAAATAGATAATTATTCTAATAATCTTAACTATTTGAAC-TGATCAGCAAACACATTTAC
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTAT
* * *
16602400 TTTTT-AA------A--T-TTAATTTTCAAAATATTATTAAATTAGTATTATTTT-TATCTGAAT
66 TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTAT-TTTGAAT
* * * * * * *
16602454 TAGCTTATATG-ATAAAAAAAATTTTTTTTATGACAAAAC-AAAGATCATAAT
130 AAGCTTGTATGAATAGAAACAA-TTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * *
16602505 GATTTGAGATTA-ATATTTGTTCAAATAGTCATAACTATTAGAAC-TGCTT-TGAAAAACAGCTT
1 GATTTGA-AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTCAG-TAAACAGATT
* * * * * * *
16602567 TACTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTGTTATTTTA-TTTCA
63 TATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGA
* * * * * * * *
16602631 GATAAGTTTTTATTAATTGAAACAATTATTTTATGACAAAACAAAATGTCAAAAT
128 -ATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * *
16602686 AATTAT-AAACAGATAATTGTTTAAATAGTCATATCTATTTGAAATTGTTTAGTAAACAGATTTA
1 GATT-TGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTA
* * ** * ***
16602750 TTTTTGTAAAATTTCTTTC-T-TTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCCAA
65 TTTTT-T-AAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGA
* * * *
16602813 ATAAGCTTGTATGAACT-GAAATAATTGTTTTATGACTAAACAAAAGGAT-AGAAT
128 ATAAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGG-TCATAAC
* * * * * *
16602867 GATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTAGTTCGGCT-AACATATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAG-TAAACAGATTTA
* * * * * * *
16602931 -TTTTTAAA--TC-T-CTTATTAATTTTTGAAATATTATTTAATTAGTGTCATTTTAATCTGAAT
65 TTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * * * * *
16602991 AAGCTTGTATGAAAAGAAACAATTGTTGTATGACAAAA-TAAAGATCATTAT
130 AAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * *
16603042 GATTTGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTAGTAAATAGATTTAG
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTAT
* * **
16603107 TTTTTAAA--TC-T-CTTATTAATTTTGAAAATATTAATAAATCAAAATTATTTTATTTTGAATA
66 TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATA
* * * **
16603168 ATC-TGTATGAACAAAAATTATTGTTTTATGACAAAACAAAAGGTCATAAC
131 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * * *
16603218 AATTTGAAATAGATAATTGTTCTAATGGACATGATTATTTGAACTTGTTCGGTAAACAGATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTAT
* ** * *
16603283 TTTTTAAATCTCTTACCTATTAATTTACAAAATATTAATAAAGTAATATTA-TTTATTTTGAATA
66 TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATA
* *
16603347 AACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAAC
131 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * * * ** * *
16603398 TATTAGAAATAAAAAATTGTTCAAACAGTTATAACTATTTGAGCTTACTCGGTAAATAGATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTAT
* * * * * *
16603463 TTTTTAAATCTTTTGCTTATTAATTGTTGAAATATTATTAAATTAGTAGTATTTTATTTTGAATA
66 TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATA
* * * * *
16603528 AGCTTATAT-AGACAGAAACAATTGGTTCATCACAAAACAAAAGGTCATAAC
131 AGCTTGTATGA-ATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * * * * ** * *
16603579 TATTTGAAATAGATAATTGTTCAAATACTTAGATCTATTTGAACATTTTTTAAAAAATAAATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TTGTTCAGTAAACAGATTTA
* * ** **
16603644 TTTGTTAAATCT-TTACTTATTAAATTTTGGAATATTAATAAATT--TAATTATTTTATTCAGAA
65 TTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGT-ATTATTTTATTTTGAA
* * * *
16603706 TAAGCTTGTATGGATATAAACAATTGGTTTATCACAAAACAAAAGGTCATAAC
129 TAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * ** * ** * *
16603759 TATTTGAAATAAATAATTGTTCAAATAGTTAAAACTATTCAAACGTGTTCAAAAAACAAATTTAC
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTAT
* * *
16603824 TTTTTAAAT-TTTTACTTATTAAATTTTT-TAATATTAATTAATT--TAATTATTTTA-TTTGAA
66 TTTTTAAATCTCTTACTTATT-AATTTTTAAAATATTAATAAATTAGT-ATTATTTTATTTTG-A
* * *
16603884 ATAAGCTTGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAAT
128 ATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * *
16603938 GATTTGAAATAGATAATTGTTCAAATAGTTATCACTATTTAAACTTATTCAGTAAACAGATTCAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTA-
* * * * *
16604003 TTTTTTAAATCTCTTACTCATTAATTTTTAGAATTTTAATAAATTAGTAATATTTTATTTCGAAT
65 TTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * * * * * *
16604068 AAGCCTATATGAATTGATACAATTGCTTTGTGACAAAACAATAGGTCAT-AC
130 AAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
*
16604119 TGATTTGAAATAGATAATTGTTCAAATAGTTATGAA-TATTTGAA
1 -GATTTGAAATAGATAATTGTTCAAATAGTCAT-AACTATTTGAA
16604163 TTATAAGATT
Statistics
Matches: 1478, Mismatches: 289, Indels: 120
0.78 0.15 0.06
Matches are distributed among these distances:
168 2 0.00
169 61 0.04
170 71 0.05
171 3 0.00
174 3 0.00
175 90 0.06
176 192 0.13
178 8 0.01
179 182 0.12
180 349 0.24
181 339 0.23
182 164 0.11
183 14 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTAT
TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATA
AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
Found at i:16603680 original size:361 final size:359
Alignment explanation
Indices: 16602155--16604162 Score: 1446
Period size: 361 Copynumber: 5.6 Consensus size: 359
16602145 ATTCACAATG
* * * * * * * * * *
16602155 ATTTTAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAATAAACAAATTTAGT
1 ATTTGAAATAGATAATTGTTCAAATACTTAGATCTATTTGAACTTATTCAGTAAACAGATTTA-T
* * * ** * * *
16602220 TTTTCAAATATCCTGGTTATT-AATCTTTCA-AA-AGTTAATAAATTAGTATTATTTTCTTTCGA
65 TTTTTAAATCTCTTACTTATTAAAT-TTT-AGAATA-TTAATAAATTAATATTATTTTATTTTGA
* * ** * *
16602282 ATAAGTTTGTATGAACTA-AAACAATTATTTTATGATTAAACAAAAGATCAGAA-TGATTTAAAA
127 ATAAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACTGATTTGAAA
* * * * * * * *
16602345 TAGATAATTATTCTAATAATCT-TAACTATTTGAAC-TGATCAGCAAACACATTTACTTTTTAAA
191 TAAATAATTGTTCAAATAGT-TATAACTATTTGAACTTGTTCAGTAAATAGATTTACTTTTTAAA
* * * *
16602408 --------T-TTAATTTTCAAAATATTATTAAATTAGTATTATTTT-TATCTGAATTAGCTTATA
255 TCTTTTCTTATTAATTTT-GAAATATTATTAAATTA--ATTATTTTAT-TTTGAATAAGCTTGTA
* * *
16602463 TGATA-A-AAAAAATTTTTTTTATGACAAAAC-AAAGATCATAA-T
316 TGA-ACAGAAACAA-TTGTTTTATGACAAAACAAAAGGTCATAACT
* * * * * * * * * *
16602505 GATTTGAGATTA-ATATTTGTTCAAATAGTCATAACTATTAGAACTGCT-TTGA-AAAACAGCTT
1 -ATTTGA-AATAGATAATTGTTCAAATACTTAGATCTATTTGAACT--TATTCAGTAAACAGATT
* * * * * * * *
16602567 TACTTTTTAAATCTCTTGCTTAAT-AATTTTTGAAATATTAATAAAGTAGTGTTATTTTA-TTTC
62 TATTTTTTAAATCTCTTACTTATTAAATTTTAG-AATATTAATAAATTAATATTATTTTATTTTG
* * * * * * *
16602630 AGATAAGTTTTTATTAATTGAAACAATTATTTTATGACAAAACAAAATG-TCA-AAATAATTAT-
126 A-ATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GATCATAACTGATT-TG
* * * * * * * * *
16602692 AAACAGATAATTGTTTAAATAGTCATATCTATTTGAAATTGTTTAGTAAACAGATTTATTTTTGT
188 AAATAAATAATTGTTCAAATAGTTATAACTATTTGAACTTGTTCAGTAAATAGATTTACTTTT-T
* * * ***
16602757 AAAATTTCTTTC-T-TTAATTTTTTG-AATGTTAATAAATTAGTATTATTTTATTCCAAATAAGC
252 -AAATCT-TTTCTTATTAA--TTTTGAAATATTATTAAATTA--ATTATTTTATTTTGAATAAGC
* * * *
16602819 TTGTATGAACTGAAATAATTGTTTTATGACTAAACAAAAGG--ATAGAAT
311 TTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATA-ACT
* * * *
16602867 GATTTGAAATAGATAATTATTCTAATAGTCTTA-A-CTATTTGAAC-TAGTTCGGCT-AACATAT
1 -ATTTGAAATAGATAATTGTTCAAATA--CTTAGATCTATTTGAACTTA-TTCAG-TAAACAGAT
* * * * * * * *
16602928 TTA-TTTTTAAA--TC-T-CTTATT-AATTTTTGAAATATTATTTAATTAGTGTCATTTTAATCT
61 TTATTTTTTAAATCTCTTACTTATTAAATTTTAG-AATATTAATAAATTAATATTATTTTATTTT
* * * * *
16602987 GAATAAGCTTGTATGAAAAGAAACAATTGTTGTATGACAAAA-TAAAGATCATTA-TGATTTGAG
125 GAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACTGATTTGAA
* * * * *
16603050 ATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTAGTAAATAGATTTAGTTTTTAAA
190 ATAAATAATTGTTCAAATAGTTATAACTATTTGAACTTGTTCAGTAAATAGATTTACTTTTTAAA
* * *
16603115 TC---TCTTATTAATTTTGAAAATATTAATAAATCAAAATTATTTTATTTTGAATAATC-TGTAT
255 TCTTTTCTTATTAATTTTG-AAATATTATTAAAT--TAATTATTTTATTTTGAATAAGCTTGTAT
* ** *
16603176 GAACAAAAATTATTGTTTTATGACAAAACAAAAGGTCATAACA
317 GAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACT
* * * *
16603219 ATTTGAAATAGATAATTGTTCTAATGGACAT-GAT-TATTTGAACTTGTTCGGTAAACAGATTTA
1 ATTTGAAATAGATAATTGTTCAAAT--ACTTAGATCTATTTGAACTTATTCAGTAAACAGATTTA
* * * *
16603282 TTTTTTAAATCTCTTACCTATT-AATTTACAAAATATTAATAAAGTAATATTA-TTTATTTTGAA
64 TTTTTTAAATCTCTTACTTATTAAATTT-TAGAATATTAATAAATTAATATTATTTTATTTTGAA
* *
16603345 TAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACT-ATTAGAAATA
128 TAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACTGATTTGAAATA
* * * ** * *
16603409 AAAAATTGTTCAAACAGTTATAACTATTTGAGCTTACTCGGTAAATAGATTTATTTTTTAAATCT
193 AATAATTGTTCAAATAGTTATAACTATTTGAACTTGTTCAGTAAATAGATTTACTTTTTAAATCT
* *
16603474 TTTGCTTATTAATTGTTGAAATATTATTAAATTAGTAGTATTTTATTTTGAATAAGCTTATAT-A
258 TTT-CTTATTAATT-TTGAAATATTATTAAATTA--ATTATTTTATTTTGAATAAGCTTGTATGA
* * *
16603538 GACAGAAACAATTGGTTCATCACAAAACAAAAGGTCATAACT
319 -ACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACT
* * ** * *
16603580 ATTTGAAATAGATAATTGTTCAAATACTTAGATCTATTTGAACATTTTTTAAAAAATAAATTTAT
1 ATTTGAAATAGATAATTGTTCAAATACTTAGATCTATTTGAAC-TTATTCAGTAAACAGATTTAT
* * * **
16603645 TTGTTAAATCT-TTACTTATTAAATTTTGGAATATTAATAAATTTA-ATTATTTTATTCAGAATA
65 TTTTTAAATCTCTTACTTATTAAATTTTAGAATATTAATAAATTAATATTATTTTATTTTGAATA
* * * * *
16603708 AGCTTGTATGGATATAAACAATTGGTTTATCACAAAACAAAAGGTCATAACT-ATTTGAAATAAA
130 AGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACTGATTTGAAATAAA
* ** * ** * *
16603772 TAATTGTTCAAATAGTTAAAACTATTCAAACGTGTTCAAAAAACAAATTTACTTTTTAAAT-TTT
195 TAATTGTTCAAATAGTTATAACTATTTGAACTTGTTCAGTAAATAGATTTACTTTTTAAATCTTT
** *
16603836 TACTTATTAAATTTTTTAATATTAATTAATTTAATTATTTTA-TTTGAAATAAGCTTGTATGAAC
260 T-CTTATT-AATTTTGAAATATT-ATTAAATTAATTATTTTATTTTG-AATAAGCTTGTATGAAC
*
16603900 AGAAACAATTATTTTATGACAAAACAAAAGGTCATAA-T
321 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACT
* * * *
16603938 GATTTGAAATAGATAATTGTTCAAATAGTTATCA-CTATTTAAACTTATTCAGTAAACAGATTCA
1 -ATTTGAAATAGATAATTGTTCAAATACTTA-GATCTATTTGAACTTATTCAGTAAACAGATTTA
* * * * * *
16604002 TTTTTTTAAATCTCTTACTCATTAATTTTTAGAATTTTAATAAATTAGTAATATTTTATTTCGAA
64 -TTTTTTAAATCTCTTACTTATTAAATTTTAGAATATTAATAAATTAATATTATTTTATTTTGAA
* * * * * * * *
16604067 TAAGCCTATATGAATTGATACAATTGCTTTGTGACAAAACAATAGGTCAT-ACTGATTTGAAATA
128 TAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACTGATTTGAAATA
*
16604131 GATAATTGTTCAAATAGTTATGAA-TATTTGAA
193 AATAATTGTTCAAATAGTTAT-AACTATTTGAA
16604163 TTATAAGATT
Statistics
Matches: 1335, Mismatches: 233, Indels: 168
0.77 0.13 0.10
Matches are distributed among these distances:
349 9 0.01
350 122 0.09
351 152 0.11
352 50 0.04
353 8 0.01
354 7 0.01
355 49 0.04
356 161 0.12
357 71 0.05
358 23 0.02
359 111 0.08
360 105 0.08
361 382 0.29
362 78 0.06
363 5 0.00
364 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (359 bp):
ATTTGAAATAGATAATTGTTCAAATACTTAGATCTATTTGAACTTATTCAGTAAACAGATTTATT
TTTTAAATCTCTTACTTATTAAATTTTAGAATATTAATAAATTAATATTATTTTATTTTGAATAA
GCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACTGATTTGAAATAAAT
AATTGTTCAAATAGTTATAACTATTTGAACTTGTTCAGTAAATAGATTTACTTTTTAAATCTTTT
CTTATTAATTTTGAAATATTATTAAATTAATTATTTTATTTTGAATAAGCTTGTATGAACAGAAA
CAATTGTTTTATGACAAAACAAAAGGTCATAACT
Found at i:16603779 original size:541 final size:530
Alignment explanation
Indices: 16602155--16604146 Score: 1593
Period size: 541 Copynumber: 3.7 Consensus size: 530
16602145 ATTCACAATG
* * * * * * * *
16602155 ATTTTAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAATAAACAAATTTAGT
1 ATTTGAAATAAATAATTGTTCAAATAGACAAAACTATTTGAACTTGTTCAGTAAACAGATTTA-T
* * *** * *
16602220 TTTTCAAATATCCTGGTTATTAATCTTTCAAA-AGTTAATAAATTAGTATTATTT-TCTTTCGAA
65 TTTTTAAAT-TCTTACCTATTAAT-TTTTAAATA-TTAATAAATTAATATTATTTAT-TTT-GAA
* * ** * *
16602283 TAAGTTTGTATGAACTA-AAACAATTATTTTATGATTAAACAAAAGATCAGAATGATTTAAAATA
125 TAAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATA
* * * * * * * * *
16602347 GATAATTATTCTAATAATCT-TAACTATTTGAACTGA-TCAGCAAACACATTTACTTTTTAAA--
189 GATAATTGTTCAAATAGT-TATAACTATTTGAACTTATTCGGTAAATAGATTTATTTTTTAAATC
* * * *
16602408 -----T-TTAATTTTCAAAATATTATTAAATTAGTATTATTTT-TATCTGAATTAGCTTATATGA
253 TTTCTTATTAATTTT-GAAATATTATTAAATTAGTAGTATTTTAT-TTTGAATAAGCTTATATGA
* * ** * * * *
16602466 TAAAAAAAATTTTTTTTATGACAAAAC-AAAGATCATAATGATTTGAGATTA-ATATTTGTTCAA
316 -AGAAACAA-TTGGTTTATGACAAAACAAAAGGTCATACTGATTTGA-AATAGATAATTGTTCAA
* * * * * * ** * *
16602529 ATAGTCATAACTATTAGAACTGCTTTGAAAAACAGCTTTACTTTTTAAATCTCTTGCTTAATAAT
378 ATACTCAGAACTATTTGAACTGGTTTAAAAAATAAATTTAGTTTTTAAA--TC-T-CTTATTAA-
*** * * * ***
16602594 TTTTG-AAATATTAATAAAGT-AGTGTTATTTTATTTCAG-ATAAGTTTTTATTAATTGAAACAA
438 TTTTGAAAATATTAATAAA-TCAAAATTATTTTA-TTCAGAATAAG-CTGTATGAACAAAAACAA
** * * * *
16602656 TTATTTTATGACAAAACAAAATGTCAAAATA
500 TTGGTTTATCACAAAACAAAAGGTCATAACA
* * * * * * * *
16602687 ATTAT-AAACAGATAATTGTTTAAATAGTCATATCTATTTGAAATTGTTTAGTAAACAGATTTAT
1 ATT-TGAAATAAATAATTGTTCAAATAGACAAAACTATTTGAACTTGTTCAGTAAACAGATTTAT
* * * * ***
16602751 TTTTGTAAAATTTCTT-TCT-TTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCCAAA
65 TTTT-T-AAA-TTCTTACCTATTAA-TTTTTAAATATTAATAAATTAATATTA-TTTATTTTGAA
* * *
16602814 TAAGCTTGTATGAACT-GAAATAATTGTTTTATGACTAAACAAAAGGAT-AGAATGATTTGAAAT
125 TAAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAA-GATCATAATGATTTGAAAT
* *
16602877 AGATAATTATTCTAATAGTCT-TAACTATTTGAAC-TAGTTCGGCTAACAT--ATTTA-TTTTTA
188 AGATAATTGTTCAAATAGT-TATAACTATTTGAACTTA-TTCGG-TAA-ATAGATTTATTTTTTA
* * * *
16602937 AATC--TCTTATTAATTTTTGAAATATTATTTAATTAGT-GTCATTTTAATCTGAATAAGCTTGT
249 AATCTTTCTTATTAA-TTTTGAAATATTATTAAATTAGTAGT-ATTTTATTTTGAATAAGCTTAT
* * *
16602999 ATGAAAAGAAACAATT-GTTGTATGACAAAA-TAAAGATCATTA-TGATTTGAGATAGATAATTG
312 ATG--AAGAAACAATTGGTT-TATGACAAAACAAAAGGTCA-TACTGATTTGAAATAGATAATTG
* * ** *
16603061 TTCAAATAGTCATAACTATTTGAACTGGTTTAGTAAATAGATTTAGTTTTTAAATCTCTTATTAA
373 TTCAAATACTCAGAACTATTTGAACTGGTTTAAAAAATAAATTTAGTTTTTAAATCTCTTATTAA
** * **
16603126 TTTTGAAAATATTAATAAATCAAAATTATTTTATTTTGAATAATCTGTATGAACAAAAATTATTG
438 TTTTGAAAATATTAATAAATCAAAATTATTTTATTCAGAATAAGCTGTATGAACAAAAACAATTG
* *
16603191 TTTTATGACAAAACAAAAGGTCATAACA
503 GTTTATCACAAAACAAAAGGTCATAACA
* * * ** * *
16603219 ATTTGAAATAGATAATTGTTCTAATGGACATGATTATTTGAACTTGTTCGGTAAACAGATTTATT
1 ATTTGAAATAAATAATTGTTCAAATAGACAAAACTATTTGAACTTGTTCAGTAAACAGATTTATT
** * *
16603284 TTTTAAATCTCTTACCTATTAATTTACAAAATATTAATAAAGTAATATTATTTATTTTGAATAAA
66 TTTTAAAT-TCTTACCTATTAATTT-TTAAATATTAATAAATTAATATTATTTATTTTGAATAAG
* * *
16603349 CTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACT-ATTAGAAATAAAAA
129 CTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA-TGATTTGAAATAGATA
* * *
16603413 ATTGTTCAAACAGTTATAACTATTTGAGCTTACTCGGTAAATAGATTTATTTTTTAAATCTTTTG
193 ATTGTTCAAATAGTTATAACTATTTGAACTTATTCGGTAAATAGATTTATTTTTTAAATC-TTT-
16603478 CTTATTAATTGTTGAAATATTATTAAATTAGTAGTATTTTATTTTGAATAAGCTTATATAGACAG
256 CTTATTAATT-TTGAAATATTATTAAATTAGTAGTATTTTATTTTGAATAAGCTTATAT-GA-AG
* *
16603543 AAACAATTGGTTCATCACAAAACAAAAGGTCATAACT-ATTTGAAATAGATAATTGTTCAAATAC
318 AAACAATTGGTTTATGACAAAACAAAAGGTCAT-ACTGATTTGAAATAGATAATTGTTCAAATAC
* * **
16603607 TTAGATCTATTTGAACATTTTTTAAAAAATAAATTTA-TTTGTTAAATCTTTACTTATTAAATTT
382 TCAGAACTATTTGAAC-TGGTTTAAAAAATAAATTTAGTTT-TTAAATC--T-CTTATT-AATTT
* ** * * *
16603671 TG-GAATATTAATAAAT-TTAATTATTTTATTCAGAATAAGCTTGTATGGATATAAACAATTGGT
441 TGAAAATATTAATAAATCAAAATTATTTTATTCAGAATAAGC-TGTATGAACAAAAACAATTGGT
*
16603734 TTATCACAAAACAAAAGGTCATAACT
505 TTATCACAAAACAAAAGGTCATAACA
** ** * ** * *
16603760 ATTTGAAATAAATAATTGTTCAAATAGTTAAAACTATTCAAACGTGTTCAAAAAACAAATTTACT
1 ATTTGAAATAAATAATTGTTCAAATAGACAAAACTATTTGAACTTGTTCAGTAAACAGATTTATT
* * * * *
16603825 TTTTAAATTTTTACTTATTAAATTTTTTAATATTAATTAATTTA-ATTATTT-TATTTGAAATAA
66 TTTTAAATTCTTACCTATT-AATTTTTAAATATTAATAAATTAATATTATTTAT-TTTG-AATAA
* * *
16603888 GCTTGTATGAACAGAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATA
128 GCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATA
* * * * *
16603953 ATTGTTCAAATAGTTATCACTATTTAAACTTATTCAGTAAACAGATTCATTTTTTTAAATCTCTT
193 ATTGTTCAAATAGTTATAACTATTTGAACTTATTCGGTAAATAGATTTA-TTTTTTAAATCT-TT
* * * * * * *
16604018 ACTCATTAATTTTTAGAATTTTAATAAATTAGTAATATTTTATTTCGAATAAGCCTATATGAATT
256 -CTTATTAATTTTGA-AATATTATTAAATTAGTAGTATTTTATTTTGAATAAGCTTATATGAA--
* * * *
16604083 GATACAATTGCTTTGTGACAAAACAATAGGTCATACTGATTTGAAATAGATAATTGTTCAAATA
317 GAAACAATTGGTTTATGACAAAACAAAAGGTCATACTGATTTGAAATAGATAATTGTTCAAATA
16604147 GTTATGAATA
Statistics
Matches: 1202, Mismatches: 184, Indels: 139
0.79 0.12 0.09
Matches are distributed among these distances:
529 3 0.00
530 16 0.01
531 227 0.19
532 207 0.17
533 43 0.04
534 3 0.00
535 6 0.00
536 74 0.06
537 177 0.15
538 36 0.03
539 14 0.01
540 153 0.13
541 236 0.20
542 7 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (530 bp):
ATTTGAAATAAATAATTGTTCAAATAGACAAAACTATTTGAACTTGTTCAGTAAACAGATTTATT
TTTTAAATTCTTACCTATTAATTTTTAAATATTAATAAATTAATATTATTTATTTTGAATAAGCT
TGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATT
GTTCAAATAGTTATAACTATTTGAACTTATTCGGTAAATAGATTTATTTTTTAAATCTTTCTTAT
TAATTTTGAAATATTATTAAATTAGTAGTATTTTATTTTGAATAAGCTTATATGAAGAAACAATT
GGTTTATGACAAAACAAAAGGTCATACTGATTTGAAATAGATAATTGTTCAAATACTCAGAACTA
TTTGAACTGGTTTAAAAAATAAATTTAGTTTTTAAATCTCTTATTAATTTTGAAAATATTAATAA
ATCAAAATTATTTTATTCAGAATAAGCTGTATGAACAAAAACAATTGGTTTATCACAAAACAAAA
GGTCATAACA
Found at i:16603853 original size:16 final size:15
Alignment explanation
Indices: 16603819--16603851 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16603809 AAAAAACAAA
*
16603819 TTTACTTTTTAAATT
1 TTTACTTATTAAATT
16603834 TTTACTTATTAAATT
1 TTTACTTATTAAATT
16603849 TTT
1 TTT
16603852 TAATATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTACTTATTAAATT
Found at i:16604324 original size:27 final size:27
Alignment explanation
Indices: 16604293--16604348 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
16604283 ACATATTTAA
16604293 TTAATATTAAAT-TTATGAA-TATTGATT
1 TTAAT-TTAAATATT-TGAATTATTGATT
*
16604320 TTAATTTAAATATTTTAATTATTGATT
1 TTAATTTAAATATTTGAATTATTGATT
16604347 TT
1 TT
16604349 TATTAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (27 bp):
TTAATTTAAATATTTGAATTATTGATT
Found at i:16605304 original size:88 final size:88
Alignment explanation
Indices: 16605212--16605485 Score: 217
Period size: 88 Copynumber: 3.1 Consensus size: 88
16605202 AACAATTTTA
16605212 TTTTTTAAGTCTCTTAGTTATTAATTTTCATAATATTATTAGATTAGTTTTATTTTATTTCAAAT
1 TTTTTTAAGTCTCTTAGTTATTAATTTTCATAATATTATTAGATTAGTTTTATTTTATTTCAAAT
16605277 AAGCTTGTATGAATAGAAATAAT
66 AAGCTTGTATGAATAGAAATAAT
* * * ** * *
16605300 TTTTTTATGACAAAACAAAAAGTTA-TAATGATTTGAAATAGATAATTATT-CATATAGTTTTA-
1 TTTTTTAAGTC---TC--TTAGTTATTAAT--TTT--CATA-AT-ATTATTAGAT-TAGTTTTAT
** * * ** *
16605362 ACTATTTGAACT-AG-TTCG---GCAA-ACGATTTTA-
54 TTTATTTCAAATAAGCTT-GTATG-AATA-GAAATAAT
16605393 TTTTTTAAGTCTCTTAGTTATTAATTTTCATAATATTATTAGATTAGTTTTATTTTATTTCAAAT
1 TTTTTTAAGTCTCTTAGTTATTAATTTTCATAATATTATTAGATTAGTTTTATTTTATTTCAAAT
16605458 AAGCTTGTATGAATAGAAATAAT
66 AAGCTTGTATGAATAGAAATAAT
16605481 TTTTT
1 TTTTT
16605486 ATGACAAAAC
Statistics
Matches: 133, Mismatches: 28, Indels: 50
0.63 0.13 0.24
Matches are distributed among these distances:
83 14 0.11
84 12 0.09
85 6 0.05
86 2 0.02
87 9 0.07
88 21 0.16
89 4 0.03
90 1 0.01
91 1 0.01
92 4 0.03
93 16 0.12
94 9 0.07
95 2 0.02
96 6 0.05
97 12 0.09
98 14 0.11
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (88 bp):
TTTTTTAAGTCTCTTAGTTATTAATTTTCATAATATTATTAGATTAGTTTTATTTTATTTCAAAT
AAGCTTGTATGAATAGAAATAAT
Found at i:16605678 original size:180 final size:179
Alignment explanation
Indices: 16604837--16605777 Score: 926
Period size: 181 Copynumber: 5.2 Consensus size: 179
16604827 TTTGAACCAG
* * *
16604837 TTTGATAAACATATTTATTTTTTAAA-AT-TT-TTATTAATTTTTGAAATATTAATAGATTAGTA
1 TTTGGTAAACATATTTATTTTTTAAATCTCTTATTATTAATTTTTGAAATATTAATAGATTAGTT
* * * * * *
16604899 TTATTTTATTTCGAACAAACTTATATGAACAAAAAC-ATTAGTTTTATGACAAAACAAAAGGTCA
66 TTATTTTATTTCAAATAAGCTTGTATGAATAAAAACAATT-GTTTTATGACAAAACAAAAGGTTA
* * *
16604963 TAACAATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGG
130 TAACAATTTGAAATAGATAATTATTC-AATAGTCATAACTATTTGAACTGA
* * * * * *
16605014 TTAGGTAAACAGAATTATTTTTTAATTCTCTTACTTATTAATTTTTGAAATTTTAATAAATTTA-
1 TTTGGTAAACATATTTATTTTTTAAATCTCTTA-TTATTAATTTTTGAAATATTAATAGA-TTAG
** * * *
16605078 TTTTATTTTA-TTCTAAATAAGCTAATATGAATTGAAAA-TATTGTTTTATGACAAGACAAAAGG
64 TTTTATTTTATTTC-AAATAAGCTTGTATGAA-TAAAAACAATTGTTTTATGACAAAACAAAAGG
** **
16605141 TTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACT-A
127 TTATAACAATTTGAAATAGATAATTATTCA-ATAGTCATAACTATTTGAACTGA
**** * * *
16605194 GTTCAACAAACA-ATTTTATTTTTTAAGTCTCTTAGTTATTAA-TTTTCATAATATTATTAGATT
1 -TTTGGTAAACATA-TTTATTTTTTAAATCTCTTA-TTATTAATTTTTGA-AATATTAATAGATT
* * * *
16605257 AGTTTTATTTTATTTCAAATAAGCTTGTATGAATAGAAATAATTTTTTTATGACAAAACAAAAAG
62 AGTTTTATTTTATTTCAAATAAGCTTGTATGAATAAAAACAATTGTTTTATGACAAAACAAAAGG
** **
16605322 TTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACT-A
127 TTATAACAATTTGAAATAGATAATTATTCA-ATAGTCATAACTATTTGAACTGA
* * * * *
16605375 GTTCGGCAAACGAT-TTTATTTTTTAAGTCTCTTAGTTATTAA-TTTTCATAATATTATTAGATT
1 -TTTGGTAAAC-ATATTTATTTTTTAAATCTCTTA-TTATTAATTTTTGA-AATATTAATAGATT
* * *
16605438 AGTTTTATTTTATTTCAAATAAGCTTGTATGAATAGAAATAATT-TTTTATGACAAAACAAAAAG
62 AGTTTTATTTTATTTCAAATAAGCTTGTATGAATAAAAACAATTGTTTTATGACAAAACAAAAGG
* * * * * *
16605502 TTATAACAATTTGAAGTATACAACTAGTCTAATAGTCATAACTATTTGAATTGA
127 TTATAACAATTTGAAATAGATAATTATTC-AATAGTCATAACTATTTGAACTGA
* *
16605556 TTTTGTAAACATATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTAATA-ATTAGT
1 TTTGGTAAACATATTTATTTTTTAAATCTCTTA-TTATTAATTTTTGAAATATTAATAGATTAGT
* * * ** * *
16605620 ATTATTTTATTCCGAATAAGCTTGTATG-ATAAAAAACAATTGTCATATGACCAAACAAAAGGTA
65 TTTATTTTATTTCAAATAAGCTTGTATGAAT-AAAAACAATTGTTTTATGACAAAACAAAAGGTT
* * * * *
16605684 AGAACAATTTGAAATAGATAATTATTGAAATGGTCATAATTATTTGAATTGA
129 ATAACAATTTGAAATAGATAATTATT-CAATAGTCATAACTATTTGAACTGA
* * *
16605736 TTTGGTAAACATATTCACTTTTTAAATCACTTATT-TTAATTT
1 TTTGGTAAACATATTTATTTTTTAAATCTCTTATTATTAATTT
16605778 GTTTGGTAGA
Statistics
Matches: 654, Mismatches: 86, Indels: 47
0.83 0.11 0.06
Matches are distributed among these distances:
177 21 0.03
178 10 0.02
179 45 0.07
180 206 0.31
181 358 0.55
182 14 0.02
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (179 bp):
TTTGGTAAACATATTTATTTTTTAAATCTCTTATTATTAATTTTTGAAATATTAATAGATTAGTT
TTATTTTATTTCAAATAAGCTTGTATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTTAT
AACAATTTGAAATAGATAATTATTCAATAGTCATAACTATTTGAACTGA
Found at i:16606097 original size:173 final size:175
Alignment explanation
Indices: 16605791--16606108 Score: 410
Period size: 173 Copynumber: 1.8 Consensus size: 175
16605781 TGGTAGATAG
* *
16605791 ATTTATTTTTTAAAATCTCTTTCATATTAATTTTCCAAATGTTAATAAATTAGTATTAATTTATT
1 ATTTAATTTTTAAAATCTCTTTCATATTAATTTT-CAAATGTTAATAAATTAGTATTAATTTAAT
* ** ** * * * *
16605856 CTAAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACTAAACAAAAGATTAAAATGATATGA
65 CCAAATAAGCTTGTAAAAAAAAAAACAATTGTTTTACGACTAAAAAAAAGATCAAAACGATATGA
*
16605921 AATAGATAATTATTCTATTAACCATTTGAATTGATTCAGCAAACAA
130 AATAGATAATCATTCTATTAACCATTTGAATTGATTCAGCAAACAA
* * *
16605967 ATTTAATTTTT-AAATCTCTTAT-TTATTAATTTT-AAATGTTATTAAATTAGTATTATTTTAAT
1 ATTTAATTTTTAAAATCTCTT-TCATATTAATTTTCAAATGTTAATAAATTAGTATTAATTTAAT
* * * *
16606029 CCAAATAAGCTTGTACAAAAAAAAAACAATTGTTTTACG-TTAAAAAAAAGGTCATAACGATTTG
65 CCAAATAAGCTTGTA-AAAAAAAAAACAATTGTTTTACGACTAAAAAAAAGATCAAAACGATATG
16606093 AAATAGATAATCATTC
129 AAATAGATAATCATTC
16606109 ATAGAGTCTT
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
173 73 0.60
174 18 0.15
175 19 0.16
176 11 0.09
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (175 bp):
ATTTAATTTTTAAAATCTCTTTCATATTAATTTTCAAATGTTAATAAATTAGTATTAATTTAATC
CAAATAAGCTTGTAAAAAAAAAAACAATTGTTTTACGACTAAAAAAAAGATCAAAACGATATGAA
ATAGATAATCATTCTATTAACCATTTGAATTGATTCAGCAAACAA
Found at i:16606338 original size:579 final size:580
Alignment explanation
Indices: 16605208--16606347 Score: 1252
Period size: 579 Copynumber: 2.0 Consensus size: 580
16605198 AACAAACAAT
* ** * * * *
16605208 TTTATTTTTTAAGTCTCTTAGTTATTAATTTTCATAATATTATTAGATTAGTTTTATTTTATTTC
1 TTTATTTTTTAAATCTCTTACATATTAATTTTCATAATATTAATAAATTAGTATTAATTTATTTC
* * * *
16605273 AAATAAGCTTGTATGAATAGAAATAATTTTTTTATGACAAAACAAAAAGTTATAATGATTTGAAA
66 AAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTTAAAATGATATGAAA
* * * * * *
16605338 TAGATAATTATTCATATAGTTTTAACTATTTGAACTAGTTCGGCAAACGATTTTATTTTTTAAGT
131 TAGATAATTATTC--ATA--TTTAACCATTTGAACTAGTTCAGCAAACAAATTTAATTTTTAAAT
* * * * *
16605403 CTCTTAGTTATTAATTTTCATAATATTATTAGATTAGTTTTATTTTATTTCAAATAAGCTTGTAT
192 CTCTTAGTTATTAATTTTCATAATATTATTAAATTAGTATTATTTTAATCCAAATAAGCTTGTAA
* * * * * * * *
16605468 GAATAGAAATAATTTTTTATGACAAAACAAAAAGTTATAACAATTTGAAGTATACAACTAGTCTA
257 AAAAAAAAACAATTTTTTACGACAAAACAAAAAGTCATAACAATTTGAAATAGACAACTAGTCTA
* * * * *
16605533 ATAGTCATAACTATTTGAATTGATTTTGTAAACATATTTATTTTTTAAATCTCTTACTTATTAAT
322 AGAGTCATAACTATTTGAACTGAGTTTGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAAG
* ** *
16605598 TTTTGAAAGATTAATAATTAGTATTATTTTATTCCGAATAAGCTTGTATGATAAAAAACAATTGT
387 TTTTGAAAGATTAATAATTAGTATTATTTTATTCCAAATAAAATAGTATGATAAAAAACAATTGT
* * * * *
16605663 CATATGACCAAACAAAAGGTAAGAACAATTTGAAATAGATAATTATTGAAATGGTCATAATTATT
452 CATATGACAAAACAAAAGGTAAGAACAATTTGAAATAAATAATTATTGAAATAGTCAAAACTATT
* * *
16605728 TGAATTGATTTGGTAAACATATTCACTTTTTAAATCACTTATTTTAATTTGTTTGGTAGATAGA
517 TGAAATGATTTGATAAACAAATTCACTTTTTAAATCACTTATTTTAATTTGTTTGGTAGATAGA
* *
16605792 TTTATTTTTTAAAATCTCTTTCATATTAATTTTCCA-AATGTTAATAAATTAGTATTAATTTA-T
1 TTTATTTTTT-AAATCTCTTACATATTAATTTT-CATAATATTAATAAATTAGTATTAATTTATT
*
16605855 TCTAAATAAGCTTGTATGAACTA-AAACAATTGTTTTATGACTAAAC-AAAAGATTAAAATGATA
64 TC-AAATAAGCTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAAG-TTAAAATGATA
*
16605918 TGAAATAGATAATTATTC-TA-TTAACCATTTGAA-TTGATTCAGCAAACAAATTTAATTTTTAA
126 TGAAATAGATAATTATTCATATTTAACCATTTGAACTAG-TTCAGCAAACAAATTTAATTTTTAA
* *
16605980 ATCTCTTATTTATTAATTTT-A-AATGTTATTAAATTAGTATTATTTTAATCCAAATAAGCTTGT
190 ATCTCTTAGTTATTAATTTTCATAATATTATTAAATTAGTATTATTTTAATCCAAATAAGCTTGT
** * * *
16606043 ACAAAAAAAAAACAATTGTTTTACGTTAAAA-AAAAGGTCATAACGATTTGAAATAGATAA-TCA
255 A-AAAAAAAAAACAATT-TTTTACGACAAAACAAAAAGTCATAACAATTTGAAATAGACAACT-A
* * * * * * *
16606106 TTC-ATAGAGTCTTAACTATTTGAACTG-GTTTG-ACAATTAGATTTATTTTTTAATTTTTTTTG
317 GTCTA-AGAGTCATAACTATTTGAACTGAGTTTGTA-AA-CAGATTTATTTTTTAA-ATCTCTTA
* * * *
16606168 GTTATTAAGTTTTGAAATATTATTAAATTAGTATTA-TTTATTCTAAATAAAATAGTATGA-ACA
378 CTTATTAAGTTTTGAAAGATTAAT-AATTAGTATTATTTTATTCCAAATAAAATAGTATGATA-A
* * * * * * *
16606231 AAACCAATTGT-TTGATGATAAAATAAAATGTTATAACAATTTGAAATAAATAATTATTGAAATA
441 AAAACAATTGTCAT-ATGACAAAACAAAAGGTAAGAACAATTTGAAATAAATAATTATTGAAATA
* * ** *
16606295 GTCAAAACTATTTGAAATGGTTTGATAAGCAAATTTTCTTTTTAAATCTCTTA
505 GTCAAAACTATTTGAAATGATTTGATAAACAAATTCACTTTTTAAATCACTTA
16606348 CAGATTTATT
Statistics
Matches: 459, Mismatches: 81, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
576 1 0.00
577 46 0.10
578 74 0.16
579 200 0.44
580 11 0.02
582 2 0.00
584 18 0.04
585 103 0.22
586 4 0.01
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (580 bp):
TTTATTTTTTAAATCTCTTACATATTAATTTTCATAATATTAATAAATTAGTATTAATTTATTTC
AAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTTAAAATGATATGAAA
TAGATAATTATTCATATTTAACCATTTGAACTAGTTCAGCAAACAAATTTAATTTTTAAATCTCT
TAGTTATTAATTTTCATAATATTATTAAATTAGTATTATTTTAATCCAAATAAGCTTGTAAAAAA
AAAAACAATTTTTTACGACAAAACAAAAAGTCATAACAATTTGAAATAGACAACTAGTCTAAGAG
TCATAACTATTTGAACTGAGTTTGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTT
GAAAGATTAATAATTAGTATTATTTTATTCCAAATAAAATAGTATGATAAAAAACAATTGTCATA
TGACAAAACAAAAGGTAAGAACAATTTGAAATAAATAATTATTGAAATAGTCAAAACTATTTGAA
ATGATTTGATAAACAAATTCACTTTTTAAATCACTTATTTTAATTTGTTTGGTAGATAGA
Found at i:16606473 original size:16 final size:17
Alignment explanation
Indices: 16606454--16606486 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16606444 ATAAAATTTA
16606454 AAATAG-ATAATTATTC
1 AAATAGTATAATTATTC
16606470 AAATAGTTATAATTATT
1 AAATAG-TATAATTATT
16606487 TGACTAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
AAATAGTATAATTATTC
Found at i:16607072 original size:12 final size:12
Alignment explanation
Indices: 16607042--16607080 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
16607032 TTATATTGTT
16607042 ATAATAAATAATA
1 ATAATAAAT-ATA
*
16607055 ACAATAAATATA
1 ATAATAAATATA
*
16607067 ATAATAATTATA
1 ATAATAAATATA
16607079 AT
1 AT
16607081 TGTTTTCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 15 0.65
13 8 0.35
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAATAAATATA
Found at i:16607575 original size:17 final size:17
Alignment explanation
Indices: 16607536--16607580 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
16607526 TAATTAACAT
*
16607536 CTTATTATTATATTTTA
1 CTTATTAATATATTTTA
*
16607553 CATATTAATATATTTCTA
1 CTTATTAATATATTT-TA
16607571 -TTATTAATAT
1 CTTATTAATAT
16607581 TAACAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (17 bp):
CTTATTAATATATTTTA
Found at i:16607898 original size:16 final size:17
Alignment explanation
Indices: 16607877--16607934 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 17
16607867 AATACAAATT
*
16607877 ATTATTATTTA-ATTTA
1 ATTATTAATTATATTTA
16607893 ATTATTAATTATATTT-
1 ATTATTAATTATATTTA
* * *
16607909 ATTAATAA-TAAATATA
1 ATTATTAATTATATTTA
16607925 A-TATTAATTA
1 ATTATTAATTA
16607935 ATAATTGTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 10 0.29
16 20 0.59
17 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTATTAATTATATTTA
Found at i:16607975 original size:13 final size:12
Alignment explanation
Indices: 16607952--16607985 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
16607942 TACTTAGGAT
16607952 TTATT-ATAAAA
1 TTATTAATAAAA
16607963 TTATTAGATAAAA
1 TTATTA-ATAAAA
16607976 TTATTAATAA
1 TTATTAATAA
16607986 TGTACTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 4 0.19
13 12 0.57
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (12 bp):
TTATTAATAAAA
Found at i:16608586 original size:177 final size:176
Alignment explanation
Indices: 16608198--16608705 Score: 468
Period size: 177 Copynumber: 2.8 Consensus size: 176
16608188 TCACTTTTTA
* * * * *
16608198 GTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCA-AAATAAATTAATACTAATTTATTAA
1 GTCATAAAACAATTATTTCAGTTAATACAAGCTTAAT-AGAAATAAAATAATACTAATTTATTAA
* * * * *
16608262 CATTT-AGAAAATTAATAAGAACGAGATTTCAAAAATAAATCTGTTTGCCATACAAGTTTAAATA
65 TATTTCA-AAAATTAATAAG-A--A-ATTTAAAAAATAAATCTGTTTACCAAAC-AGTTAAAATA
* * ** * *
16608326 GTTATTATTATTTGAACAATTGTCTATTTAAAAATGTTATAACCTTTTAATTT
124 ATTATGACCATTTGAACAATTATCTATTTAAAAATATTATAACCTTTTAATTT
* *
16608379 GTCATAAAACAATTGTTTCAGTTAATACAAGCTTAGAT-GGAATAAAATAATACTAATTTATTAA
1 GTCATAAAACAATTATTTCAGTTAATACAAGCTTA-ATAGAAATAAAATAATACTAATTTATTAA
** *
16608443 TATTTCCTAAATTAATAAGAAATTTAAAAAATAAATTTGTTTACCAAATCAGTTAAAATAATTAT
65 TATTTCAAAAATTAATAAGAAATTTAAAAAATAAATCTGTTTACCAAA-CAGTTAAAATAATTAT
* * * * * *
16608508 GGCCATTTGAATAGTTATCTATTT-CAAATCATTATGACCTTTTATTTT
129 GACCATTTGAACAATTATCTATTTAAAAAT-ATTATAACCTTTTAATTT
* ** * * * *
16608556 GTCATAATACAATTATTT-TTTCTCATACAAGCTTATTAGAAATAAAATAATATTAATTGATTAA
1 GTCATAAAACAATTATTTCAGT-TAATACAAGCTTAATAGAAATAAAATAATACTAATTTATTAA
* * * * * * *
16608620 TATTTCAAAAAACTAGGTAATAGATTTAAACAATAAATCTATTTACCAAACCAGTTCAAATAATT
65 TATTTC-AAAAATTA-ATAAGAAATTTAAAAAATAAATCTGTTTACCAAA-CAGTTAAAATAATT
* *
16608685 ATAACTATTTGAACAATTATC
127 ATGACCATTTGAACAATTATC
16608706 AATCTCAAAT
Statistics
Matches: 268, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
176 6 0.02
177 125 0.47
178 7 0.03
179 57 0.21
180 1 0.00
181 71 0.26
182 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (176 bp):
GTCATAAAACAATTATTTCAGTTAATACAAGCTTAATAGAAATAAAATAATACTAATTTATTAAT
ATTTCAAAAATTAATAAGAAATTTAAAAAATAAATCTGTTTACCAAACAGTTAAAATAATTATGA
CCATTTGAACAATTATCTATTTAAAAATATTATAACCTTTTAATTT
Found at i:16608905 original size:17 final size:17
Alignment explanation
Indices: 16608868--16608905 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
16608858 AATAACTAAT
*
16608868 TATTAAAAAATTGTATT
1 TATTAAAAAATTGTATA
16608885 TATTAAAATAATT-TATA
1 TATTAAAA-AATTGTATA
16608902 TATT
1 TATT
16608906 TATTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATTAAAAAATTGTATA
Found at i:16608959 original size:11 final size:11
Alignment explanation
Indices: 16608945--16608973 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
16608935 CATTATGATA
16608945 ATTATAATATG
1 ATTATAATATG
16608956 ATTATAATATG
1 ATTATAATATG
16608967 ATTATAA
1 ATTATAA
16608974 ATTAATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (11 bp):
ATTATAATATG
Found at i:16609021 original size:18 final size:17
Alignment explanation
Indices: 16608959--16609023 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 17
16608949 TAATATGATT
*
16608959 ATAATATGATTATAAATTA
1 ATAATAT-A-TATTAATTA
*
16608978 ATATTGATATATTAATTTA
1 ATAAT-ATATATTAA-TTA
*
16608997 ATTATATATATTTAATTA
1 ATAATATATA-TTAATTA
16609015 ATAATATAT
1 ATAATATAT
16609024 TATCATAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 21 0.55
19 15 0.39
20 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
ATAATATATATTAATTA
Found at i:16609086 original size:83 final size:85
Alignment explanation
Indices: 16608926--16609086 Score: 188
Period size: 83 Copynumber: 1.9 Consensus size: 85
16608916 TAAATAAGTA
* *
16608926 TAATAATAACATTATGATAATTATAATATGATTATAATATGATTATAAATTAATATTGATATATT
1 TAATAATAACATTATCATAAATATAATA-GATTATAATAT-ATTATAAATTAATATTGATATATT
*
16608991 AATTTAATTATATATATTTAAT
64 AATTGAATTATATATATTTAAT
* * *
16609013 TAATAAT-ATATTATCATAAATATAATA-ATTATAATA-ATTTATAAATTATTATTTAT-TAATT
1 TAATAATAACATTATCATAAATATAATAGATTATAATATA-TTATAAATTAATATTGATAT-ATT
16609074 AATATGAA-TATAT
64 AAT-TGAATTATAT
16609087 GTTATATTAG
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
82 2 0.03
83 27 0.42
84 12 0.18
86 17 0.26
87 7 0.11
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (85 bp):
TAATAATAACATTATCATAAATATAATAGATTATAATATATTATAAATTAATATTGATATATTAA
TTGAATTATATATATTTAAT
Found at i:16609393 original size:31 final size:31
Alignment explanation
Indices: 16609358--16609416 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
16609348 ATGGCCATAA
*
16609358 TTATTTGAACTAATTTGGTAAACATATTCAC
1 TTATTTGAACTAATTCGGTAAACATATTCAC
* **
16609389 TTATTTGAATTTGTTCGGTAAACATATT
1 TTATTTGAACTAATTCGGTAAACATATT
16609417 TATTTTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (31 bp):
TTATTTGAACTAATTCGGTAAACATATTCAC
Found at i:16610637 original size:13 final size:13
Alignment explanation
Indices: 16610616--16610647 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
16610606 CTTTTTTATT
16610616 ATTATAATTAATTA
1 ATTA-AATTAATTA
16610630 ATTAAATTAATTA
1 ATTAAATTAATTA
16610643 ATTAA
1 ATTAA
16610648 TCAATATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTAAATTAATTA
Found at i:16610640 original size:17 final size:17
Alignment explanation
Indices: 16610620--16610680 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
16610610 TTTATTATTA
16610620 TAATTAATTAATTAAAT
1 TAATTAATTAATTAAAT
*
16610637 TAATTAATTAATCAATAT
1 TAATTAATTAATTAA-AT
*
16610655 TAATTAAAT-ATTAAATGT
1 TAATTAATTAATTAAA--T
16610673 TAATTAAT
1 TAATTAAT
16610681 ATAAATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 1 0.03
17 18 0.49
18 18 0.49
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (17 bp):
TAATTAATTAATTAAAT
Found at i:16610658 original size:18 final size:18
Alignment explanation
Indices: 16610620--16610680 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
16610610 TTTATTATTA
*
16610620 TAATTAATTAATTAA-AT
1 TAATTAATTAATAAATAT
*
16610637 TAATTAATTAATCAATAT
1 TAATTAATTAATAAATAT
* * *
16610655 TAATTAAATATTAAATGT
1 TAATTAATTAATAAATAT
16610673 TAATTAAT
1 TAATTAAT
16610681 ATAAATAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
TAATTAATTAATAAATAT
Found at i:16610680 original size:4 final size:4
Alignment explanation
Indices: 16610620--16610661 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
16610610 TTTATTATTA
*
16610620 TAAT TAAT TAAT TAAAT TAAT TAAT TAAT CAA- T-AT TAAT TAA
1 TAAT TAAT TAAT T-AAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
16610662 ATATTAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 1 0.03
3 1 0.03
4 27 0.82
5 4 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (4 bp):
TAAT
Found at i:16610786 original size:24 final size:25
Alignment explanation
Indices: 16610730--16610786 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
16610720 AAATAATTAA
*
16610730 TTAAATATTTTTAATTTAATAGAAT
1 TTAAATATTTTAAATTTAATAGAAT
* *
16610755 TGATATATTTTAAATTTTAA-A-AAT
1 TTAAATATTTTAAA-TTTAATAGAAT
16610779 TTAAATAT
1 TTAAATAT
16610787 ATATTAGTAG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
24 9 0.35
25 12 0.46
26 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (25 bp):
TTAAATATTTTAAATTTAATAGAAT
Found at i:16611160 original size:14 final size:14
Alignment explanation
Indices: 16611143--16611223 Score: 50
Period size: 14 Copynumber: 6.1 Consensus size: 14
16611133 AAATAATCCT
16611143 ATATAAATAATTTA
1 ATATAAATAATTTA
16611157 ATAT---T-ATTTA
1 ATATAAATAATTTA
16611167 A-ATAAATAATATTA
1 ATATAAATAAT-TTA
* *
16611181 ATA-AATTAATATA
1 ATATAAATAATTTA
*
16611194 ATCAT-AATAAATTA
1 AT-ATAAATAATTTA
* *
16611208 ATATGAATATTTTA
1 ATATAAATAATTTA
16611222 AT
1 AT
16611224 TATTATTTAG
Statistics
Matches: 51, Mismatches: 7, Indels: 18
0.67 0.09 0.24
Matches are distributed among these distances:
9 2 0.04
10 6 0.12
11 1 0.02
12 1 0.02
13 8 0.16
14 32 0.63
15 1 0.02
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (14 bp):
ATATAAATAATTTA
Found at i:16611190 original size:32 final size:34
Alignment explanation
Indices: 16611143--16611232 Score: 96
Period size: 32 Copynumber: 2.7 Consensus size: 34
16611133 AAATAATCCT
16611143 ATATAAATAATTTAATATTATTTA-AATAAA-TA
1 ATATAAATAATTTAATATTATTTATAATAAATTA
* * * *
16611175 ATATTAATAAATTAATA-TAATCATAATAAATTA
1 ATATAAATAATTTAATATTATTTATAATAAATTA
* *
16611208 ATATGAATATTTTAATTATTATTTA
1 ATATAAATAATTTAA-TATTATTTA
16611233 GTAAATCCAT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
31 4 0.09
32 21 0.47
33 14 0.31
34 2 0.04
35 4 0.09
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (34 bp):
ATATAAATAATTTAATATTATTTATAATAAATTA
Found at i:16611194 original size:23 final size:23
Alignment explanation
Indices: 16611143--16611223 Score: 66
Period size: 19 Copynumber: 3.7 Consensus size: 23
16611133 AAATAATCCT
*
16611143 ATATAAATAATTTAATATTATTTA
1 ATATAAATAATTTAATA-TAATTA
16611167 A-ATAAATAATATTAATA-AATTA
1 ATATAAATAAT-TTAATATAATTA
*
16611189 ATAT-AATCA--TAATA-AATTA
1 ATATAAATAATTTAATATAATTA
* *
16611208 ATATGAATATTTTAAT
1 ATATAAATAATTTAAT
16611224 TATTATTTAG
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
19 14 0.29
20 3 0.06
22 13 0.27
23 11 0.23
24 7 0.15
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (23 bp):
ATATAAATAATTTAATATAATTA
Done.