Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 77 of 113
Found at i:16748101 original size:22 final size:22
Alignment explanation
Indices: 16748068--16748110 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16748058 CTTTTACTTA
*
16748068 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAATAATAT
16748090 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAATAATA
16748111 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTCAAATAATACAATAATAT
Found at i:16749099 original size:22 final size:20
Alignment explanation
Indices: 16749074--16749131 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
16749064 AATAATCGGT
16749074 AATAATAATATATCAATATTAC
1 AATAATAATATAT-AATA-TAC
* *
16749096 AATAATTATA-ATAATATAT
1 AATAATAATATATAATATAC
*
16749115 AATAATAATATTTAATA
1 AATAATAATATATAATA
16749132 ATATTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 11 0.35
20 9 0.29
21 2 0.06
22 9 0.29
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAATAATATATAATATAC
Found at i:16749118 original size:19 final size:18
Alignment explanation
Indices: 16749075--16749139 Score: 68
Period size: 16 Copynumber: 3.8 Consensus size: 18
16749065 ATAATCGGTA
16749075 ATAATAATATATCAATATT
1 ATAATAATATAT-AATATT
* *
16749094 ACAATAAT-TATAATAAT
1 ATAATAATATATAATATT
16749111 AT-ATAATA-ATAATATT
1 ATAATAATATATAATATT
16749127 -TAATAATAT-TAAT
1 ATAATAATATATAAT
16749140 TTAATTTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
15 1 0.03
16 22 0.56
17 6 0.15
18 3 0.08
19 7 0.18
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAATAATATATAATATT
Found at i:16749146 original size:19 final size:19
Alignment explanation
Indices: 16749124--16749163 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
16749114 TAATAATAAT
*
16749124 ATTTAA-TAATATTAATTTA
1 ATTTAATTAATAAT-ATTTA
16749143 ATTTAATTAATAATATTTA
1 ATTTAATTAATAATATTTA
16749162 AT
1 AT
16749164 CTTCATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTAATTAATAATATTTA
Found at i:16749248 original size:21 final size:21
Alignment explanation
Indices: 16749206--16749244 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
16749196 ATTTATTAGT
* *
16749206 TAAATTAATTATAATAATATG
1 TAAATTAAATATAAAAATATG
16749227 TAAATTAAATA-AAAAATA
1 TAAATTAAATATAAAAATA
16749245 ATGTTCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (21 bp):
TAAATTAAATATAAAAATATG
Found at i:16749274 original size:19 final size:19
Alignment explanation
Indices: 16749252--16749292 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
16749242 ATAATGTTCA
* *
16749252 AAATATTATTAACTATTTT
1 AAATAATATTAACTATTAT
*
16749271 AAATAATATTTACTATTAT
1 AAATAATATTAACTATTAT
16749290 AAA
1 AAA
16749293 CAACAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATATTAACTATTAT
Found at i:16749716 original size:7 final size:8
Alignment explanation
Indices: 16749690--16749736 Score: 62
Period size: 7 Copynumber: 6.0 Consensus size: 8
16749680 TGATATTAAA
16749690 TTAATTAT
1 TTAATTAT
16749698 ATTAATTAT
1 -TTAATTAT
16749707 TTAATT-T
1 TTAATTAT
*
16749714 TTAGTTAT
1 TTAATTAT
16749722 TTAATT-T
1 TTAATTAT
16749729 TTAATTAT
1 TTAATTAT
16749737 CAAATAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
7 13 0.38
8 13 0.38
9 8 0.24
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (8 bp):
TTAATTAT
Found at i:16749723 original size:15 final size:15
Alignment explanation
Indices: 16749699--16749736 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
16749689 ATTAATTATA
16749699 TTAATTATTTAATTT
1 TTAATTATTTAATTT
*
16749714 TTAGTTATTTAATTT
1 TTAATTATTTAATTT
16749729 TTAATTAT
1 TTAATTAT
16749737 CAAATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (15 bp):
TTAATTATTTAATTT
Found at i:16750070 original size:179 final size:178
Alignment explanation
Indices: 16749772--16750510 Score: 644
Period size: 180 Copynumber: 4.2 Consensus size: 178
16749762 TTAATAAGAC
* * * *
16749772 AATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTATCGAACAAATTCAAATCGTTATCACTA
1 AATTAATAAGTAAAAGATTT-AAAAATAAAT-AATTTATCGAACAAGTTCAAATAGTTATGACTA
* *
16749837 TTTGAATAATTATTTATTTCAAATTC-TTATAACTTTT-TTTTGTCATAAAACAATTGTTTTC-G
64 TTTGAATAATTATCTATTTCAAA-TCATTATAACTTTTGTTTTGTCATAAAACAATTG-TTTCAA
* * * * * *
16749899 TCCATACGAGCTTATTCAGATTAAAATAATATCGATTTATTAATATTTCAAC
127 TTCATACAAGCTTATTCAGAATAAAATAATATCAATTTATTAATATTCCAAA
* * * *
16749951 AATTAATAAGTAAAAGATTTAAAAA-AAATAAGTTTACCAAACAAGTTTAAATAGTCATGACTAT
1 AATTAATAAGTAAAAGATTTAAAAATAAATAA-TTTATCGAACAAGTTCAAATAGTTATGACTAT
** * * *
16750015 TTGAATAATTATCTGCTTCAAATCATTGTAGCATTTTGTTTTGTAATAAAACAATTGTTTCAATT
65 TTGAATAATTATCTATTTCAAATCATTATAAC-TTTTGTTTTGTCATAAAACAATTGTTTCAATT
*** *
16750080 CATGTTAGCTTATT-TGAAATAAAATAATA-CTAATTTATTAATATTCCAAA
129 CATACAAGCTTATTCAG-AATAAAATAATATC-AATTTATTAATATTCCAAA
* *
16750130 AATTAA-AAGTAAGAGAATTAAAAAAATAAA-ACTATTTATCGAACAAGTTCAAATAGTTA-GAC
1 AATTAATAAGTAAAAG-ATT-TAAAAATAAATA--ATTTATCGAACAAGTTCAAATAGTTATGAC
* * *
16750192 TATCTT-AATAATTATCTATTTCAAAACATTACAACTTTTTGTTTTGTCATAAAACAATTGGTTC
62 TAT-TTGAATAATTATCTATTTCAAATCATTATAAC-TTTTGTTTTGTCATAAAACAATTGTTTC
* * * **
16750256 TATTCATTCAAGCTTATTTCA-AATAAAATAATATAAATTTATTAATGCTCCAAA
125 AATTCATACAAGCTTA-TTCAGAATAAAATAATATCAATTTATTAATATTCCAAA
* *
16750310 AATTAATAAGTAAAAGTTTTAAAAATAAATTTATTTA---AA-AA-TT--AAT-GTTATGACTAT
1 AATTAATAAGTAAAAGATTTAAAAATAAA-TAATTTATCGAACAAGTTCAAATAGTTATGACTAT
* * * ** * * * * * **
16750367 TTGAACAATTATCTATCTCCAATTGTTATGATTTTTGTTTTGTCCTAAAACATTTAATTTCTGTT
65 TTGAATAATTATCTATTTCAAATCATTATAACTTTTGTTTTGTCATAAAACAATT-GTTTCAATT
* * *
16750432 CA-ACAAGCTTATTCA-AAGTAAAATATTA-CTAAATTAATAATA-TCCTAAA
129 CATACAAGCTTATTCAGAA-TAAAATAATATC-AATTTATTAATATTCC-AAA
*
16750481 CATTAATAAGT-AAAGATTTAAAAAATAAAT
1 AATTAATAAGTAAAAGATTT-AAAAATAAAT
16750511 GTGTTGTAAT
Statistics
Matches: 461, Mismatches: 73, Indels: 61
0.77 0.12 0.10
Matches are distributed among these distances:
170 17 0.04
171 75 0.16
172 37 0.08
174 2 0.00
175 2 0.00
176 5 0.01
177 53 0.11
178 23 0.05
179 100 0.22
180 110 0.24
181 36 0.08
182 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.39
Consensus pattern (178 bp):
AATTAATAAGTAAAAGATTTAAAAATAAATAATTTATCGAACAAGTTCAAATAGTTATGACTATT
TGAATAATTATCTATTTCAAATCATTATAACTTTTGTTTTGTCATAAAACAATTGTTTCAATTCA
TACAAGCTTATTCAGAATAAAATAATATCAATTTATTAATATTCCAAA
Found at i:16751165 original size:19 final size:20
Alignment explanation
Indices: 16751141--16751184 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
16751131 AATAATAATA
*
16751141 AATTAT-TATCTATTTATT-T
1 AATTATGTAT-TATGTATTAT
16751160 AATTATGTATTATGTATTAT
1 AATTATGTATTATGTATTAT
16751180 AATTA
1 AATTA
16751185 ATATAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (20 bp):
AATTATGTATTATGTATTAT
Found at i:16751518 original size:18 final size:18
Alignment explanation
Indices: 16751487--16751521 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16751477 TACTAATTTG
*
16751487 TATATAATAGAATTAATA
1 TATATAATACAATTAATA
*
16751505 TATATAATTCAATTAAT
1 TATATAATACAATTAAT
16751522 TATGAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TATATAATACAATTAATA
Found at i:16751634 original size:29 final size:30
Alignment explanation
Indices: 16751602--16751662 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
16751592 ATAATAGTTA
*
16751602 ATTAAATAAATACTTA-ATTTATTTAATAT
1 ATTAAATAAATACTTATAATTATTTAATAT
*
16751631 ATTAAATAAATTCTTATTAATTATTTAATAT
1 ATTAAATAAATACTTA-TAATTATTTAATAT
16751662 A
1 A
16751663 ATAGAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 15 0.54
31 13 0.46
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTAAATAAATACTTATAATTATTTAATAT
Found at i:16751703 original size:23 final size:23
Alignment explanation
Indices: 16751672--16751766 Score: 83
Period size: 23 Copynumber: 4.3 Consensus size: 23
16751662 AATAGAATAT
*
16751672 TAATT-AATTAAATATTATTATA
1 TAATTAAATTAAATAATATTATA
*
16751694 TAATTAAATT-AATAATATAATA
1 TAATTAAATTAAATAATATTATA
* *
16751716 TTAATTATATT-AATTATATTATAA
1 -TAATTAAATTAAATAATATTAT-A
* *
16751740 TAAATATA-TAAA-AATATTATA
1 TAATTAAATTAAATAATATTATA
16751761 TAATTA
1 TAATTA
16751767 TCCTAATAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
21 6 0.10
22 23 0.38
23 31 0.51
24 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TAATTAAATTAAATAATATTATA
Found at i:16751734 original size:18 final size:16
Alignment explanation
Indices: 16751648--16751748 Score: 51
Period size: 14 Copynumber: 6.6 Consensus size: 16
16751638 AAATTCTTAT
16751648 TAATTAT-TTAATATAA
1 TAATTATATTAAT-TAA
16751664 TAGA--ATATTAATTAA
1 TA-ATTATATTAATTAA
16751679 TTAA--ATATT-ATTATA
1 -TAATTATATTAATTA-A
*
16751694 TAATTAAATTAA-TAA
1 TAATTATATTAATTAA
*
16751709 T-ATAATATTAATTATA
1 TAATTATATTAATTA-A
16751725 TTAATTATATT-A-TAA
1 -TAATTATATTAATTAA
*
16751740 TAAATATAT
1 TAATTATAT
16751749 AAAAATATTA
Statistics
Matches: 69, Mismatches: 5, Indels: 24
0.70 0.05 0.24
Matches are distributed among these distances:
14 23 0.33
15 17 0.25
16 18 0.26
17 4 0.06
18 7 0.10
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (16 bp):
TAATTATATTAATTAA
Found at i:16751756 original size:45 final size:46
Alignment explanation
Indices: 16751662--16751767 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 46
16751652 TATTTAATAT
* * *
16751662 AATAGAATATTAATTA-ATTAAATATTATTATATAATTAAATTAAT
1 AATATAATATTAATTATATTAAATATTATTATATAAATAAATTAAA
* *
16751707 AATATAATATTAATTATATTAATTA-TATTATAATAAATATA-TAAA
1 AATATAATATTAATTATATTAAATATTATTAT-ATAAATAAATTAAA
*
16751752 AATATTATA-TAATTAT
1 AATATAATATTAATTAT
16751768 CCTAATAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
44 7 0.13
45 32 0.60
46 14 0.26
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (46 bp):
AATATAATATTAATTATATTAAATATTATTATATAAATAAATTAAA
Found at i:16751760 original size:11 final size:12
Alignment explanation
Indices: 16751659--16751760 Score: 52
Period size: 11 Copynumber: 8.3 Consensus size: 12
16751649 AATTATTTAA
16751659 TATAATAGAATAT
1 TATAATA-AATAT
16751672 TAATTAATTAAATAT
1 T-A-TAA-TAAATAT
* *
16751687 TATTATATA-AT
1 TATAATAAATAT
* *
16751698 TA-AATTAATAA
1 TATAATAAATAT
*
16751709 TATAAT-ATTAAT
1 TATAATAAAT-AT
*
16751721 TATATTAATTATAT
1 TATAATAA--ATAT
16751735 TATAATAAATA-
1 TATAATAAATAT
16751746 TATAA-AAATAT
1 TATAATAAATAT
16751757 TATA
1 TATA
16751761 TAATTATCCT
Statistics
Matches: 68, Mismatches: 11, Indels: 22
0.67 0.11 0.22
Matches are distributed among these distances:
10 8 0.12
11 18 0.26
12 15 0.22
13 4 0.06
14 11 0.16
15 10 0.15
16 2 0.03
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (12 bp):
TATAATAAATAT
Found at i:16751794 original size:21 final size:21
Alignment explanation
Indices: 16751752--16751810 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
16751742 AATATATAAA
16751752 AATATTATATAATTATCCTAAT
1 AATATTA-ATAATTATCCTAAT
* **
16751774 AATATTAATCATTATGTTAAT
1 AATATTAATAATTATCCTAAT
16751795 AATATTAAGTAATTAT
1 AATATTAA-TAATTAT
16751811 TAATATTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 19 0.59
22 13 0.41
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (21 bp):
AATATTAATAATTATCCTAAT
Found at i:16751945 original size:20 final size:18
Alignment explanation
Indices: 16751898--16751947 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
16751888 ATTAGTTACT
*
16751898 TAATAATTATCAATTATA
1 TAATAATTATCAAATATA
16751916 TGAATAAATTATCCAAATATCA
1 T-AAT-AATTAT-CAAATAT-A
16751938 TAATAATTAT
1 TAATAATTAT
16751948 AATAATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
19 3 0.11
20 12 0.44
21 9 0.33
22 2 0.07
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (18 bp):
TAATAATTATCAAATATA
Found at i:16752662 original size:32 final size:35
Alignment explanation
Indices: 16752608--16752692 Score: 115
Period size: 32 Copynumber: 2.5 Consensus size: 35
16752598 GATTAATAAG
16752608 TATATATTCATTT-TAATAATATATAATTTAAAA-T
1 TATATATT-ATTTATAATAATATATAATTTAAAATT
*
16752642 TATA-ATT-TTTATAATAATATATATTTTAAAATT
1 TATATATTATTTATAATAATATATAATTTAAAATT
*
16752675 TATATATTATTTAAAATA
1 TATATATTATTTATAATA
16752693 TTTTAAGACT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
31 3 0.07
32 19 0.42
33 8 0.18
34 7 0.16
35 8 0.18
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (35 bp):
TATATATTATTTATAATAATATATAATTTAAAATT
Found at i:16752668 original size:17 final size:17
Alignment explanation
Indices: 16752601--16752682 Score: 62
Period size: 17 Copynumber: 4.8 Consensus size: 17
16752591 AATTATTGAT
*
16752601 TAATAAGTATATATTCATTT
1 TAATAA-TATATATT--TTA
*
16752621 TAATAATATATAATTTA
1 TAATAATATATATTTTA
* *
16752638 AAATTATA-AT-TTTTA
1 TAATAATATATATTTTA
16752653 TAATAATATATATTTTA
1 TAATAATATATATTTTA
* *
16752670 AAAT-TTATATATT
1 TAATAATATATATT
16752683 ATTTAAAATA
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
15 10 0.20
16 12 0.24
17 16 0.31
19 7 0.14
20 6 0.12
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (17 bp):
TAATAATATATATTTTA
Found at i:16752679 original size:18 final size:16
Alignment explanation
Indices: 16752634--16752691 Score: 64
Period size: 18 Copynumber: 3.5 Consensus size: 16
16752624 TAATATATAA
16752634 TTTAAAATTATA-ATT
1 TTTAAAATTATATATT
* *
16752649 TTTATAATAATATATAT
1 TTTAAAATTATATAT-T
16752666 TTTAAAATTTATATATT
1 TTTAAAA-TTATATATT
16752683 ATTTAAAAT
1 -TTTAAAAT
16752692 ATTTTAAGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 10 0.29
16 2 0.06
17 9 0.26
18 14 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAAAATTATATATT
Found at i:16753299 original size:19 final size:18
Alignment explanation
Indices: 16753275--16753310 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
16753265 TCATTAATGT
16753275 TATTATAATTATAGTTAAC
1 TATTATAATTAT-GTTAAC
16753294 TATTATAATTATGTTAA
1 TATTATAATTATGTTAA
16753311 TTGTTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.50
Consensus pattern (18 bp):
TATTATAATTATGTTAAC
Found at i:16753501 original size:26 final size:25
Alignment explanation
Indices: 16753441--16753498 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 25
16753431 AACAATACTA
16753441 ATATGATTATAATATAAAATAATATT
1 ATAT-ATTATAATATAAAATAATATT
16753467 ATATATTATAATATATAAATAATATT
1 ATATATTATAATATA-AAATAATATT
16753493 AT-TATT
1 ATATATT
16753499 TATTAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 15 0.48
26 16 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (25 bp):
ATATATTATAATATAAAATAATATT
Found at i:16754142 original size:35 final size:34
Alignment explanation
Indices: 16754098--16754163 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
16754088 ATAATTTAAT
16754098 AAAATTTTAAT-TAATTAATATCATAATAATAATAAG
1 AAAATTTTAATGTAA-TAATAT-ATAA-AATAATAAG
*
16754134 AAAA-TTTAATGTTATAATATATAAAATAAT
1 AAAATTTTAATGTAATAATATATAAAATAAT
16754164 TTTATATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
33 6 0.21
34 4 0.14
35 12 0.43
36 6 0.21
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (34 bp):
AAAATTTTAATGTAATAATATATAAAATAATAAG
Found at i:16754168 original size:20 final size:20
Alignment explanation
Indices: 16754140--16754189 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
16754130 TAAGAAAATT
* *
16754140 TAATGTTATAATATATAAAA
1 TAATTTTATAATAAATAAAA
* *
16754160 TAATTTTATATTAAATAAAT
1 TAATTTTATAATAAATAAAA
*
16754180 TTATTTTATA
1 TAATTTTATA
16754190 TATTTTTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TAATTTTATAATAAATAAAA
Found at i:16754254 original size:26 final size:26
Alignment explanation
Indices: 16754218--16754273 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
16754208 ATTATTATCA
* *
16754218 ATATATTATAA-TAATATAATTATTTT
1 ATATATAATAATTAATATAA-TAATTT
*
16754244 ATATATAATAATTTATATAATAATTT
1 ATATATAATAATTAATATAATAATTT
16754270 ATAT
1 ATAT
16754274 TGTTATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
ATATATAATAATTAATATAATAATTT
Found at i:16754272 original size:10 final size:12
Alignment explanation
Indices: 16754245--16754273 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
16754235 AATTATTTTA
16754245 TATATAATAATT
1 TATATAATAATT
16754257 TATATAATAATT
1 TATATAATAATT
16754269 TATAT
1 TATAT
16754274 TGTTATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TATATAATAATT
Found at i:16755926 original size:19 final size:20
Alignment explanation
Indices: 16755889--16755936 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
16755879 AAATAACATT
16755889 TAAATAATAACTATTATTTA
1 TAAATAATAACTATTATTTA
16755909 TAAAT-ATAA-TATTAATTTA
1 TAAATAATAACTATT-ATTTA
16755928 T-AATAATAA
1 TAAATAATAA
16755937 ATTACTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 7 0.27
19 14 0.54
20 5 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAATAATAACTATTATTTA
Found at i:16755940 original size:18 final size:19
Alignment explanation
Indices: 16755886--16755940 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
16755876 TATAAATAAC
16755886 ATTTA-AATAATAACTATT-
1 ATTTATAATAATAA-TATTA
16755904 ATTTATAA-ATATAATATTA
1 ATTTATAATA-ATAATATTA
16755923 ATTTATAATAATAA-ATTA
1 ATTTATAATAATAATATTA
16755941 CTAATAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
18 14 0.42
19 18 0.55
20 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTATAATAATAATATTA
Found at i:16756073 original size:10 final size:10
Alignment explanation
Indices: 16756054--16756092 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
16756044 TAAGTTATTC
16756054 ATTA-TAATA
1 ATTATTAATA
16756063 ATTATTAATA
1 ATTATTAATA
16756073 ATTAATTAATA
1 ATT-ATTAATA
*
16756084 ATAATTAAT
1 ATTATTAAT
16756093 TAACCATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 4 0.15
10 14 0.52
11 9 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
ATTATTAATA
Found at i:16756095 original size:14 final size:14
Alignment explanation
Indices: 16756035--16756095 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
16756025 ATTAAAGAAT
16756035 ATTATATAATAAGTT-
1 ATTA-ATAATAA-TTA
* *
16756050 ATTCATTATAA-TA
1 ATTAATAATAATTA
*
16756063 ATTATTAATAATTA
1 ATTAATAATAATTA
16756077 ATTAATAATAATTA
1 ATTAATAATAATTA
16756091 ATTAA
1 ATTAA
16756096 CCATCAACTT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
12 1 0.03
13 8 0.21
14 26 0.68
15 3 0.08
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
ATTAATAATAATTA
Found at i:16756826 original size:24 final size:25
Alignment explanation
Indices: 16756798--16756847 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
16756788 AAATTATGAC
* *
16756798 AATTTATAATT-GATATTTATTATA
1 AATTTAAAATTAGATATTTATAATA
*
16756822 AATTTAAAATTAGTTATTTATAATA
1 AATTTAAAATTAGATATTTATAATA
16756847 A
1 A
16756848 TTATATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
AATTTAAAATTAGATATTTATAATA
Found at i:16757503 original size:7 final size:6
Alignment explanation
Indices: 16757458--16757607 Score: 73
Period size: 6 Copynumber: 24.5 Consensus size: 6
16757448 ATATGAAATC
* *
16757458 TTAATA TT-AT- TTATTA TTAAT- TTATAAA TTAAATA TTAATA CTTAATTA
1 TTAATA TTAATA TTAATA TTAATA TTA-ATA TT-AATA TTAATA -TTAA-TA
* * *
16757507 TTAATA TTTATA TAAATA TT-ATAA TTAATA TTATTA -TATATA TTGAATA
1 TTAATA TTAATA TTAATA TTAAT-A TTAATA TTAATA TTA-ATA TT-AATA
* * *
16757556 TTAAATA TTAAATA TT--TA ATAATA TTTATA ATAATAA TT-ATA GTTAATA
1 TT-AATA TT-AATA TTAATA TTAATA TTAATA TTAAT-A TTAATA -TTAATA
16757605 TTA
1 TTA
16757608 TTCTAAATAA
Statistics
Matches: 110, Mismatches: 17, Indels: 34
0.68 0.11 0.21
Matches are distributed among these distances:
4 5 0.05
5 11 0.10
6 50 0.45
7 40 0.36
8 4 0.04
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (6 bp):
TTAATA
Found at i:16757536 original size:38 final size:38
Alignment explanation
Indices: 16757485--16757565 Score: 95
Period size: 32 Copynumber: 2.3 Consensus size: 38
16757475 TAATTTATAA
*
16757485 ATTAAATATTAATACTT-A-ATTATTA-ATAT-TT--AT
1 ATTAAATATT-ATAATTAATATTATTATATATATTGAAT
16757518 A-TAAATATTATAATTAATATTATTATATATATTGAAT
1 ATTAAATATTATAATTAATATTATTATATATATTGAAT
16757555 ATTAAATATTA
1 ATTAAATATTA
16757566 AATATTTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
31 5 0.12
32 9 0.22
33 8 0.20
34 4 0.10
35 2 0.05
37 3 0.08
38 9 0.22
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (38 bp):
ATTAAATATTATAATTAATATTATTATATATATTGAAT
Found at i:16757569 original size:14 final size:14
Alignment explanation
Indices: 16757485--16757576 Score: 59
Period size: 14 Copynumber: 6.6 Consensus size: 14
16757475 TAATTTATAA
16757485 ATTAAATATT-AAT
1 ATTAAATATTAAAT
*
16757498 ACTTAATTATT-AAT
1 A-TTAAATATTAAAT
*
16757512 ATT-TATA-TAAAT
1 ATTAAATATTAAAT
*
16757524 ATTATA-ATTAATATT
1 ATTAAATATTAA-A-T
*
16757539 ATTATATATATTGAAT
1 ATTA-A-ATATTAAAT
16757555 ATTAAATATTAAAT
1 ATTAAATATTAAAT
*
16757569 ATTTAATA
1 ATTAAATA
16757577 ATATTTATAA
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
11 1 0.02
12 9 0.14
13 8 0.13
14 28 0.44
15 6 0.10
16 5 0.08
17 2 0.03
18 4 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (14 bp):
ATTAAATATTAAAT
Found at i:16757581 original size:31 final size:31
Alignment explanation
Indices: 16757503--16757581 Score: 72
Period size: 32 Copynumber: 2.5 Consensus size: 31
16757493 TTAATACTTA
* * *
16757503 ATTATTAATATTTATATAAATATTATAATTAAT
1 ATTA-TAATATATAT-TGAATATTAAAATTAAT
*
16757536 ATTATTATATATATTGAATATTAAATATTAAAT
1 ATTATAATATATATTGAATATTAAA-ATT-AAT
16757569 ATT-TAATA-ATATT
1 ATTATAATATATATT
16757582 TATAATAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 14 0.36
32 15 0.38
33 10 0.26
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (31 bp):
ATTATAATATATATTGAATATTAAAATTAAT
Found at i:16757606 original size:56 final size:55
Alignment explanation
Indices: 16757485--16757596 Score: 135
Period size: 56 Copynumber: 2.0 Consensus size: 55
16757475 TAATTTATAA
*
16757485 ATTA-AATATTAATACTTAATTATTAATATTTATATAAATATTATAATTAATATT
1 ATTATAATATTAATACTTAAATATTAATATTTATATAAATATTATAATTAATATT
16757539 ATTATATATATTGAATA-TTAAATATTAAATATTTA-AT-AATATTTATAA-TAATAATT
1 ATTATA-ATATT-AATACTTAAATATT-AATATTTATATAAATA-TTATAATTAAT-ATT
16757595 AT
1 AT
16757597 AGTTAATATT
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
54 4 0.08
55 9 0.18
56 26 0.51
57 12 0.24
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (55 bp):
ATTATAATATTAATACTTAAATATTAATATTTATATAAATATTATAATTAATATT
Found at i:16757668 original size:20 final size:20
Alignment explanation
Indices: 16757641--16757717 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
16757631 TTTATTAGTT
*
16757641 TAAT-TAATATTATTTATAA
1 TAATATAATATTAATTATAA
16757660 TAATATAATATTAATTA-AA
1 TAATATAATATTAATTATAA
* *
16757679 CTAATAAAATATT-TTTAATAA
1 -TAATATAATATTAATT-ATAA
* *
16757700 TTATTTAATATTAATTAT
1 TAATATAATATTAATTAT
16757718 TTATAAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
19 8 0.17
20 34 0.74
21 4 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATATAATATTAATTATAA
Found at i:16758564 original size:16 final size:17
Alignment explanation
Indices: 16758532--16758564 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16758522 AATCAGTTAA
16758532 AATAATTATGGCTATTTG
1 AATAATTAT-GCTATTTG
16758550 AATAATTAT-CTATTT
1 AATAATTATGCTATTT
16758565 CAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48
Consensus pattern (17 bp):
AATAATTATGCTATTTG
Found at i:16758750 original size:180 final size:178
Alignment explanation
Indices: 16757762--16760587 Score: 1077
Period size: 181 Copynumber: 15.7 Consensus size: 178
16757752 TTGAACATTT
* * * * *
16757762 AAATATAATCAGTAAGAGATTTAAAAAGTAAATATGCTTACCAAACCATTTCAAATAGTTTTGAC
1 AAAT-TAAT-AGTAAG-GATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGAC
* * * * * * *
16757827 TATTTGAATAATTATCTATTTCACATCATTATAA-CCTTTATTTTGTCATCAAATAATTTGTTCT
63 TATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATTT-TTTT
* * * ** * * * * *
16757891 ATTGATACTATTTTATTCAAAATAAAATATTGCAAATTTAATAATA-TTCCA
127 AATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCCA
** ** * * ** * * * **
16757942 AAACTTAATAACCAAAAAATTTTAAAAATAAATCTAATTACCGAACCAATTCAAATAGTTAAAAC
1 AAA-TTAAT-A-GTAAGGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGAC
* * ** * * * * * *
16758007 TATATAAATGACTATCTATTTTAAATTGTTATGA-CTTTT-TCTTTCGTCATAAAACAATTGTCT
63 TATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTAT-TTT-GTCATAAAACAATTTTTT
** ** * * *
16758070 TGTTTGTACGAGCTTATTC-ATATTAAAATAATACTAATTTCA-TAATATTT-AA
126 TAATCATACAAGCTTATTCGA-AATAAAATAATACTAATTT-ATTAATATTTCCA
* * * * * * * ** *
16758122 AAATTAATAAGTAA-GATATTAAAAAAATAAATTTATCTATCGAATCATTTCAAATGGTTAAGAC
1 AAATTAAT-AGTAAGGAT-TT-AAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGAC
** * * * * * * * * * *
16758186 TATTAAAATAATTATATACTTCAAATCGTTCTGACCATTTT-TTTAGTTATAAAACAATTGTTTC
63 TATTTGAACAATTATCTATTTCAAATCGTTATAATC-TTTTATTTTGTCATAAAACAATTTTTTT
* * **
16758250 AATTCATACAAGCTTATTC-AGAATAAATTAATACTAATTTATTAAAATTTGGA
127 AA-TCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATATTTCCA
* * * * * * *
16758303 AAATTAATAAGAAAGAGATTTAAAAAATAAATATGTTTGCCGAACAAGTTCAAATAGTTATTATT
1 AAATTAAT-AGTAAG-GATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * * * *
16758368 ATTTGAACAATTGTCTATTTAAAAAT-GTTATAACCTTTTAATTTGTCAGAAAATAATTGTTTTA
64 ATTTGAACAATTATCTATTT-CAAATCGTTATAATCTTTTATTTTGTCATAAAACAATTTTTTTA
* * * * *
16758432 GTTAATACAAGCTTAGAT-GGAATAAAATAATACTAATTTATTAATATTTCCT
128 -ATCATACAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATTTCCA
* * * * *
16758484 AAATTAATAATAA--ATTTAAAAAATAAATTTGTTTACCAAATCAGTTAAAATAATTATGGCTAT
1 AAATTAATAGTAAGGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACTAT
* * * *
16758547 TTGAATAATTATCTATTTCAAATCATTATGATCTTTTATTTTGTCATAATACAATTATTTTTAAT
66 TTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATT-TTTTTAAT
*
16758612 CATACAAGCTTATTCGAAATAAAATAATACTAATTGATTAATATTT-CA
130 CATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCCA
* * * *
16758660 AAAATAATAGGTAACGGATTTAAATAATAAATCTATTTACCAAACCAGTTCAAATAATTATGACT
1 AAATTAATA-GTAA-GGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * *
16758725 ATTTGAACAATTATCAATCTCAAATCGTTAAAAT-TTTTGTTTTGTCATAAAACAATTGTTTCTA
64 ATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATT-TTTTTA
* * * ** * ** * **
16758789 ATCATAGAAGCTTTTGTTTAGTCATAAAATATTTGTTTCATGTCT-TATAAGCTTATTTGGA
128 ATCATACAAGC--TT-ATTCGAAATAAAATA-AT-ACTAAT-T-TAT-TAA---TATTTCCA
* ** * * ** * *
16758850 ATAA--AATAATCCAA--ATTTATGAACATTTGGAAA-AT-TAATAAGCAAAAGATTTGAAA-AA
1 A-AATTAATAGT--AAGGATTTA--AA-AAAT--AAATATGT--TTACCAAACCAGTTCAAATAA
* * * * * * * * * *
16758908 --ATAAATTTGTTTACCAA--A-CAAGTTTTAAA-AGTTATGACTAT-TTAATTAGTTATTTTTA
56 TTATGACTAT-TTGAACAATTATCTA-TTTCAAATCGTTAT-A--ATCTT--TTA-TT-TTGTCA
* * * ** * * * *
16758966 TAAAATCATTATGACATTTTCTT-TTGACATA-AAAC-AATT-G-TTTCAATTCATA-AAATTTT
112 TAAAA-CA--AT----TTTT-TTAAT--CATACAAGCTTATTCGAAATAAAATAATACTAA-TTT
* * ***
16759025 ATCCAA-AATAAAA
166 AT-TAATATTTCCA
* * * * * * * * *
16759038 AGAATTTAATAAGT-AGGAGTATAAAAAAATAAACT-TGTTTATCGAGCAAATTCAGATAGTTAC
1 A-AA-TTAAT-AGTAAGGA-T-TTAAAAAATAAA-TATGTTTACCAAACCAGTTCAAATAATTAT
* * * * * * * *
16759101 GACTATTTGAATAATTGTCTATTTAAAATCATTATGA-----TGTTTTGTCATAAAATAATTGTT
60 GACTATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATTTTT
* * * * *
16759161 TCAGTTCATACAAGCTTATTCAAAATAAAATAATTCTAATTTATTAATATTTCAA
125 TTA-ATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCCA
* * * * * * ** *
16759216 AAATTAATAAGTAAGGGATTTAAAAAGTGAATCTATTTGCGAAATTAGTTCAAATAATTATG-GT
1 AAATTAAT-AGTAA-GGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * * * *
16759280 CATTTCAACAATTATCTATTTCAAATTGTTATCACCTTTTGTTTGGTCATATAACAATCATTTTT
64 -ATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAAT--TTTTT
* * * * * **
16759345 T-ATCATACATGATTATTTGAAATAAAATAATAATAATTTATTAATCTTTTAA
126 TAATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCCA
* * ** * *
16759397 AAATT-A-A-TAAGAGATTTAAAAAATGAATTTGTTTACTGAACCAGTTTAAATAGTTATGACTA
1 AAATTAATAGTAAG-GATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACTA
* * * * * * * ** **
16759459 TTTGAACAATTCTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAATGATTATTTTTGT
65 TTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATT-TTTTTAA
* * * *
16759524 TCATACAAGCTTATTCAAAATAAAACAATACTAATCTAATAATA-TTCCAA
129 TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCC-A
* * * * * * * *
16759574 AAATTAATAACTAAGGGGTTTAAAAAATAAATTTGTTTGCCGAACCAATTCAAATAGTTAAGACT
1 AAATTAAT-AGTAA-GGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * * * *
16759639 ATATGAACAATTATCTATTTCAAATTGTTAT-GTCCTTTTGTCTTGTCATAAAACAATTTTCTCA
64 ATTTGAACAATTATCTATTTCAAATCGTTATAAT-CTTTTATTTTGTCATAAAACAATTTTTTTA
* * * * * * *
16759703 ATTCATGCTAGCTTTTTTGAAATAAAATAA-AATGAACTTATTAATATTTCAA
128 A-TCATACAAGCTTATTCGAAATAAAATAATACT-AATTTATTAATATTTCCA
* * * * * *
16759755 AAAATAATAAGTAAGAGATTTAAAAAATAATTCTTTTTACCTAACCAGTTCAAAAAATTAT-ACT
1 AAATTAAT-AGTAAG-GATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * * * *
16759819 ATTTAAACAATTATATATTTCAAATCATTATTA-CTTTTTGTTTTGTCATACAACAAATGTTTTT
64 ATTTGAACAATTATCTATTTCAAATCGTTATAATC-TTTTATTTTGTCATAAAAC-AATTTTTTT
** * * * * *
16759883 GTTCATATAAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTT-CA
127 AATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCCA
* * * * * * * * *
16759934 AAA--ATTAGTAAGTGATTTAGACAATAAATCTATGTATCAAACTAGTTCAAATAGTTATGACTA
1 AAATTAATAGTAAG-GATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACTA
* * * * * * ** * * *
16759997 TTTGAGCAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTTGTAAAAAAATTGTTTCTAT
65 TTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATT-TTTTTAA
* * **
16760062 TCATACAAGCTTACTT-GCATTAAAATAATACTAATTTATTAATATTTTGA
129 TCATACAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATTTCCA
* * ** * * * * * *
16760112 CAATTAGTAAGTAAAAAATTT---TAA-AAATATGTTTACTACACTAGATCAAATAATCATGA-T
1 AAATTAAT-AGT-AAGGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * * *
16760172 AATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGA-TTTGTCATAAAAGAGTTGTTTT
64 -ATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTT-ATTTTGTCATAAAACAATT-TTTT
*** * * *
16760236 GGTTCATATAAGCTTATTCGAAATAAAATAATATTAATTTATTAATATTTCTA
126 TAATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCCA
* * * * * * *
16760289 AAATTAATAAGTAAAAGATTTAAATAATAAATTTGTTTACCAAGCAAGTTCAAATAGTTATTACT
1 AAATTAAT-AGT-AAGGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * * *
16760354 ATTTGAACAATTATATATTTCAAGTCTTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCTA
64 ATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATT-TTTTTA
* * * * * *
16760419 TTCATACAAGTTTATTTGGAATAAAATAATACTAATTTATTATTA-TTCTAA
128 ATCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTC-CA
* * ** * * * * * *
16760470 AAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTACTGAACAAGTTTAAATAGTCATGTCC
1 AAATTAAT-AGTAAG-GATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACT
* * * * * * * *
16760535 ATTTGATCTATTATTTATTTCAAATTGTTATAATATTTTGTTTTATTATAAAA
64 ATTTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAA
16760588 TAATACCAAT
Statistics
Matches: 1982, Mismatches: 517, Indels: 293
0.71 0.19 0.10
Matches are distributed among these distances:
174 5 0.00
175 9 0.00
176 135 0.07
177 489 0.25
178 39 0.02
179 130 0.07
180 329 0.17
181 619 0.31
182 34 0.02
183 10 0.01
184 4 0.00
185 2 0.00
186 3 0.00
187 12 0.01
188 26 0.01
189 19 0.01
190 25 0.01
191 16 0.01
192 31 0.02
193 11 0.01
194 10 0.01
195 6 0.00
196 1 0.00
197 4 0.00
200 4 0.00
201 5 0.00
202 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
AAATTAATAGTAAGGATTTAAAAAATAAATATGTTTACCAAACCAGTTCAAATAATTATGACTAT
TTGAACAATTATCTATTTCAAATCGTTATAATCTTTTATTTTGTCATAAAACAATTTTTTTAATC
ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCCA
Found at i:16760578 original size:181 final size:180
Alignment explanation
Indices: 16757758--16758801 Score: 642
Period size: 180 Copynumber: 5.8 Consensus size: 180
16757748 TAATTTGAAC
* * * * * ** * *
16757758 ATTTAAATA-TAATCAGTAAGAGATTTAAAAAGTAAATATGCTTACCAAACCATTTCAAATAGTT
1 ATTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTT
* * * * * * *
16757822 TTGACTATTTGAATAATTATCTATTTCACATCATTATAACC-TTTATTTTGTCATCAAATAATT-
66 ATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTG
* * ** * * * * *
16757885 TGTTCTATTGATACTATTTTATTCAAAATAAAATATTGCAAATTTAATAAT
131 T-TTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAT
* * ** * * * * ** *
16757936 ATTCCAAAACTTAATAACCAAAAAATTTTAAAAATAAATCTAATTACCGAACCAA-TTCAAATAG
1 ATT-TAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAA-CAAGTTCAAATAG
** * * ** * * * ** * * * *
16758000 TTAAAACTATATAAATGACTATCTATTTTAAATTGTTATGACTTTTTCTTTCGTCATAAAACAAT
64 TTATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAAT
* * * *
16758065 TGTCTTGT-TT-GTACGAGCTTATTC-ATATTAAAATAATACTAATTTCA-TAAT
129 TGT-TTCTATTCATACAAGCTTATTCGA-AATAAAATAATACTAATTT-ATTAAT
* * * * * *
16758116 ATTTAAAAATTAATAAGTAAGATATTAAAAAAATAAATTTATCTA-TCGAATC-ATTTCAAATGG
1 ATTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACT-GAA-CAAGTTCAAATAG
* ** * * * * * * *
16758179 TTAAGACTATTAAAATAATTATATACTTCAAATCGTTCTGACCATTTT-TTTAGTTATAAAACAA
64 TTATGACTATTTGAACAATTATATATTTCAAATCATTATAACC-TTTTGTTTTGTCATAAAACAA
* * *
16758243 TTGTTTCAATTCATACAAGCTTATTC-AGAATAAATTAATACTAATTTATTAAA
128 TTGTTTCTATTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAAT
* * * * *
16758296 ATTTGGAAAATTAATAAGAAAGAGATTTAAAAAATAAATATGTTTGCCGAACAAGTTCAAATAGT
1 ATTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGT
* * * * * * ** * *
16758361 TATTATTATTTGAACAATTGTCTATTTAAAAAT-GTTATAACCTTTTAATTTGTCAGAAAATAAT
65 TATGACTATTTGAACAATTATATATTT-CAAATCATTATAACCTTTTGTTTTGTCATAAAACAAT
* * *
16758425 TGTTT-TAGTTAATACAAGCTTAGAT-GGAATAAAATAATACTAATTTATTAAT
129 TGTTTCTA-TTCATACAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAAT
** ** * *
16758477 ATTTCCTAAATTAATAA-T-A-A-ATTTAAAAAATAAATTTGTTTACCAAATC-AGTTAAAATAA
1 ATTT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAA-CAAGTTCAAATAG
* * * * * * *
16758537 TTATGGCTATTTGAATAATTATCTATTTCAAATCATTATGATCTTTTATTTTGTCATAATACAAT
64 TTATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAAT
* * * *
16758602 TATTTTTAATCATACAAGCTTATTCGAAATAAAATAATACTAATTGATTAAT
129 TGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAT
* * * * ** * *
16758654 ATTTCAAAAA-TAATAGGTAACG-GATTTAAATAATAAATCTATTTACCAAACCAGTTCAAATAA
1 ATTT-AAAAATTAATAAGTAA-GAGATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAG
* * **
16758717 TTATGACTATTTGAACAATTATCA-ATCTCAAATCGTTA-AAATTTTTGTTTTGTCATAAAACAA
64 TTATGACTATTTGAACAATTAT-ATATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAA
* *
16758780 TTGTTTCTAATCATAGAAGCTT
128 TTGTTTCTATTCATACAAGCTT
16758802 TTGTTTAGTC
Statistics
Matches: 675, Mismatches: 159, Indels: 63
0.75 0.18 0.07
Matches are distributed among these distances:
176 10 0.01
177 130 0.19
178 11 0.02
179 141 0.21
180 213 0.32
181 161 0.24
182 9 0.01
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (180 bp):
ATTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTGAACAAGTTCAAATAGTT
ATGACTATTTGAACAATTATATATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTG
TTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAT
Found at i:16761920 original size:14 final size:11
Alignment explanation
Indices: 16761890--16761919 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
16761880 CTGATTAAAA
16761890 TAATAATATTT
1 TAATAATATTT
16761901 TAATAATATTT
1 TAATAATATTT
*
16761912 TAAAAATA
1 TAATAATA
16761920 AATTTGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAATAATATTT
Found at i:16762542 original size:182 final size:178
Alignment explanation
Indices: 16762186--16762826 Score: 548
Period size: 182 Copynumber: 3.6 Consensus size: 178
16762176 GCTTAGAGGG
* * * *
16762186 AATAAAGTAATACTAATTTATTAATATTTCCTAAAA-TAATAAGTAAGAAATTTAAAAACA-AAT
1 AATAAAATAATACTAATTTATTAATATTT-CAAAAATTAATAAGTAAGAGATTTAAAAA-ATAAA
* * * * * * * *
16762249 TTGTTTACCGAATCAATTAAAATAATTATGGCCATTTGAATGATTATCTATTTCAAATTGTTATG
64 TTGTTTACCGAACCAATTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTAAG
16762314 A-CATTTTGTTTTGTCATAAAATATTTGTTTTTTATCATACAAGCTTATTCGA
129 ATC--TTTGTTTTGTCATAAAATATTTG-TTTTTATCATACAAGCTTATTCGA
* *
16762366 AATAAAATATTACTAATTTTTTAATATTTCAAAAATTAATAAGTAAGAGATTTTAAAAAAATAAA
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGA-TTT-AAAAAATAAA
** * * * *
16762431 TATGTTTATTGAACCAATTCAAATAGTTATGACTATTTGAACAATTATCAATCTCAAATCATTAA
64 T-TGTTTACCGAACCAATTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTAA
* * * * *
16762496 GATCCTTGTTTTGTCATAAAACAATTATTTCTTATCATAGAAGCTTATTC-A
128 GATCTTTGTTTTGTCATAAAATATTTGTTT-TTATCATACAAGCTTATTCGA
** * * * * *
16762547 GTTAAAAATAATATTAATTTAATATTATTTC-AAAATT--TAA-TAAGAGAATTAAAAAAGAAAT
1 AAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * ** ** *
16762608 GTTTTTGCCGAACCAATTCAAATAGTTAAAACTATTACAATAATTATCTATTTCAAATCGTTCTA
65 -TGTTTACCGAACCAATTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTT-AA
* * * * *
16762673 -ATCTTATGTTTAGTCATAAAATATTTGTTTTATATCTTACATGCTTATTTGG
128 GATCTT-TGTTTTGTCATAAAATATTTGTTTT-TATCATACAAGCTTATTCGA
* * * * *
16762725 AATTAAATAAT-CTAAATTTCTTAACA-TTCAAAAAATTAATAAGCAAAAGATTTGAAAAAATAA
1 AATAAAATAATACT-AATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTT-AAAAAATAA
* *** * *
16762788 ATTAATTTATTAAACAAATTCAAATACTTATGACTATTT
63 ATT-GTTTACCGAACCAATTCAAATAGTTATGACTATTT
16762827 AGACAACTAA
Statistics
Matches: 361, Mismatches: 80, Indels: 38
0.75 0.17 0.08
Matches are distributed among these distances:
176 68 0.19
177 52 0.14
178 14 0.04
179 8 0.02
180 42 0.12
181 23 0.06
182 102 0.28
183 51 0.14
184 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (178 bp):
AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
GTTTACCGAACCAATTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTAAGAT
CTTTGTTTTGTCATAAAATATTTGTTTTTATCATACAAGCTTATTCGA
Found at i:16762901 original size:22 final size:22
Alignment explanation
Indices: 16762857--16762922 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
16762847 ATTTTAATTC
*
16762857 AATTATTAATATAGAATTAATTAAT
1 AATTATTAATATTG-A-T-ATTAAT
16762882 AATTATTAATATTGATATTAAT
1 AATTATTAATATTGATATTAAT
* * *
16762904 AATAAATAATATTAATATT
1 AATTATTAATATTGATATT
16762923 TAGTTATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 22 0.59
23 1 0.03
24 1 0.03
25 13 0.35
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (22 bp):
AATTATTAATATTGATATTAAT
Found at i:16763059 original size:22 final size:24
Alignment explanation
Indices: 16763011--16763065 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
16763001 ATAATATTTT
*
16763011 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
16763035 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
16763057 ATAACTATT
1 ATAAATATT
16763066 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:16763515 original size:181 final size:181
Alignment explanation
Indices: 16763233--16764939 Score: 825
Period size: 182 Copynumber: 9.4 Consensus size: 181
16763223 ACTAGTATGG
* * * *
16763233 TAAATAGATTTATTTATTAAATC-T--CTTATTAATTTTTGA-AATATTAATAAATTAATATTAT
1 TAAACAGATTTATTTTTTAAATCTTCACTTATTAA-TTTTCATAATATTAATAAATTAGTATTAT
* * ** * * *
16763294 TTTATTT-TGAACAAACTTATATGAACA-AAAAAATTTGTTTTATGACAAAACAAAAGGTCATAA
65 TTTATTTCTCAATAAGTTTGTATGAATATAAACAA-TTGTTTTATGACAAAACAAAAGGTCATAA
* * *
16763357 CGATTTGAAATAGATAATTATTCATATAGCCATAACTATTTGAATTGGTTCGA
129 CGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTCGA
* * * * *
16763410 TAAACAAATTTATTTTTTAAATCTATCAGTTATTAAATTTCATAATATTACTAGATTAGTATTAT
1 TAAACAGATTTATTTTTTAAATCT-TCACTTATTAATTTTCATAATATTAATAAATTAGTATTAT
* *
16763475 TTTATTTCT-AATAAGTTTGTATGAATATAAATAATTGTTTTATGACAAAACAAAAGGTTATAAC
65 TTTATTTCTCAATAAGTTTGTATGAATATAAACAATTGTTTTATGACAAAACAAAAGGTCATAAC
* * * * *
16763539 -AATTGAAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTAGA
130 GATTTG-AAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTCGA
* * *
16763591 TAAATAGACTTATTTTTTAAATCTCCTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTA
1 TAAACAGATTTATTTTTTAAATCTTC-ACTTATTAA-TTTTCATAATATTAATAAATTAGTATTA
* * * * *
16763655 TTTTA-TTCTGAATAGGCTTGTATG-ATGAAAAAACAATTGTTTTATGACAAAACAAAAGTTCAT
64 TTTTATTTCTCAATAAGTTTGTATGAAT--ATAAACAATTGTTTTATGACAAAACAAAAGGTCAT
* * * * *
16763718 AATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGA
127 AACGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTCGA
* * * * * * * *
16763773 TAAACTGATTTATGTTTAAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTAT
1 TAAACAGATTTATTTTTTAAATCT-TCACTTATTAATTTTCATAATATTAATAAATTAGTATTAT
* * *
16763838 TTTATTT-TCAGATAAGCTTT-TATGAAT-TGAAACAATTGTTTTATGATAAAATATAAGGTCAT
65 TTTATTTCTCA-ATAAG-TTTGTATGAATAT-AAACAATTGTTTTATGACAAAACAAAAGGTCAT
* * * * * * *
16763900 CATGATTTTAAATAGATAATTATTCAAATAGTCAAAAATATTTGAACTTG-TTCAA
127 AACGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAAC-TGATTCGA
* * *
16763955 TAAATAGA-TT-TTTTTT---TC-T-A---ATT--TCTT-ACTTA-ATTAATAAATTAGTATTAT
1 TAAACAGATTTATTTTTTAAATCTTCACTTATTAATTTTCA-TAATATTAATAAATTAGTATTAT
** ** * * * * *
16764006 TTTATTT-GGAATAAGCATG--TGAGT-TAAAGCAATTATTTTGTGACTAAACAAAAGGTCAAAA
65 TTTATTTCTCAATAAGTTTGTATGAATATAAA-CAATTGTTTTATGACAAAACAAAAGGTCATAA
* * * * * *
16764067 TGATTTGAAATAGATAATTGTTCTAATAGTCTTAACTATTTAAACTGATTC-A
129 CGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTCGA
* * * * * * *
16764119 GCAAACACATTTATTTTTTAAATCCTT-ACTTATTAATGTTT-AGAATATTATTAAGTTAGCAAT
1 -TAAACAGATTTATTTTTTAAAT-CTTCACTTATTAAT-TTTCATAATATTAATAAATTAGTATT
* * * * * * * *
16764182 ATTTTACTT-TGAATAAGCTTGT-TGAACATAAATTAAATGTTTTAAGACAAAACAAAA-ATCAT
63 ATTTTATTTCTCAATAAGTTTGTATGAATATAAA-CAATTGTTTTATGACAAAACAAAAGGTCAT
* * ** * * *
16764244 AACTATTT-AAATTAGTTCGATAAAGAGATTTAGTTTTTAAATCTCTTATTAA-T-TTTCAAAAT
127 AACGATTTGAAA-TA----GAT----A-A-TTA---TTCAAATAGC-CA-TAACTATTT-GAACT
* *
16764306 -AGT-AA
175 GATTCGA
* * * * ** *** *
16764311 TAAAATAGTATTATTTTATTTTGAATAATTTTGTA-TGAATAGAAACAACTGGTTTTGGAACATT
1 T-AAACAG-ATT-TATT-TTTT--A-AATCTT-CACT---T---ATTAA-T--TTTCATAATATT
** * * * *
16764375 AATAAATTTA-TATTATTTTATTT-GAAATAAGCTTGAATGAATAGAACCAATTGTTTTATGACA
49 AATAAA-TTAGTATTATTTTATTTCTCAATAAGTTTGTATGAATATAAACAATTGTTTTATGACA
** * * * * **
16764438 AAACAAAAAGGTTGTAATGTTTTGAAATAGATAATTATT-AAGATAGTCATAACTATTTGAGCCC
113 AAAC-AAAAGGTCATAACGATTTGAAATAGATAATTATTCAA-ATAGCCATAACTATTTGAACTG
16764502 ATTCGA
176 ATTCGA
* * * * *
16764508 TAAACAGATTTATTTTTTTAATTCTCTTACTTTTTAATTTTTAAAATATTAATAAATTAGTATTA
1 TAAACAGATTTA-TTTTTTAAATCT-TCACTTATTAATTTTCATAATATTAATAAATTAGTATTA
* * *** * * * * *
16764573 TTTTATTTC-AAATAAGCTAACATGAAT-TGAAACAATTGTTTTATTATAAAACAAAATGTTACA
64 TTTTATTTCTCAATAAGTTTGTATGAATAT-AAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * *
16764636 ATGATTTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTG-TTTGG
128 ACGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAAC-TGATTCGA
* * * * * *
16764690 TAAAC----TTATTTTTTTAATTGTTTACTTATTAATTGTTGA-AATATTAATAAATCAATATTA
1 TAAACAGATTTA-TTTTTTAAATCTTCACTTATTAATT-TTCATAATATTAATAAATTAGTATTA
* * * * *** * *
16764750 TTTTA-ATC-CGAATAAGCTCGTATGGACGGAAACAATTGCTTTATGACAAAACAAAAAAGTCAT
64 TTTTATTTCTC-AATAAGTTTGTATGAATATAAACAATTGTTTTATGACAAAAC-AAAAGGTCAT
* ** * * * *
16764813 AA-GAATTTGAAATAAATAATTATTCTGATAGTCATAACGATTTGAATTTG-TTCAA
127 AACG-ATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAA-CTGATTCGA
* * * * ** * *
16764868 TAAATAGATTTCTTTTTAAAATCTTTTACTTATTAATTGCCTTAATATTAATAAATTTGTATTAT
1 TAAACAGATTTATTTTTTAAATC-TTCACTTATTAATTTTCATAATATTAATAAATTAGTATTAT
16764933 TTTATTT
65 TTTATTT
16764940 GAAGTAAGCT
Statistics
Matches: 1172, Mismatches: 248, Indels: 214
0.72 0.15 0.13
Matches are distributed among these distances:
164 6 0.01
165 75 0.06
166 3 0.00
167 11 0.01
168 26 0.02
169 5 0.00
170 1 0.00
171 3 0.00
172 2 0.00
174 1 0.00
175 4 0.00
176 2 0.00
177 93 0.08
178 108 0.09
179 15 0.01
180 41 0.03
181 194 0.17
182 312 0.27
183 85 0.07
184 4 0.00
185 1 0.00
186 2 0.00
187 1 0.00
188 1 0.00
189 3 0.00
191 5 0.00
192 18 0.02
193 8 0.01
194 14 0.01
195 14 0.01
196 14 0.01
197 5 0.00
198 4 0.00
199 4 0.00
200 1 0.00
201 2 0.00
204 3 0.00
205 4 0.00
206 4 0.00
207 47 0.04
208 14 0.01
209 9 0.01
210 3 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
TAAACAGATTTATTTTTTAAATCTTCACTTATTAATTTTCATAATATTAATAAATTAGTATTATT
TTATTTCTCAATAAGTTTGTATGAATATAAACAATTGTTTTATGACAAAACAAAAGGTCATAACG
ATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTGATTCGA
Found at i:16763820 original size:363 final size:356
Alignment explanation
Indices: 16763187--16765041 Score: 1016
Period size: 363 Copynumber: 5.1 Consensus size: 356
16763177 GTACGATTTG
* * * * * * * *
16763187 AAATAAATAAATGTTCAAATTGTTATAACCAGTTGAACT-AGTATGGTAAATAGATTTATTTATT
1 AAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGATTA-GATAAATAGA-TTATTTTTT
* * * * *
16763251 AAA-TCT-CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTTGAACAAACTTAT
64 AAATTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCTTGT
* *
16763314 ATGA-ACAAAAA-AATTTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTA
128 ATGAGA-AAAAACAA-TTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTG
* * * * * * *
16763377 TTCATATAGCCATAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTATCAGTTA
191 TTTAAATAGCCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTTAAATCTCTAACTTA
* * *
16763442 TTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTCTAATAAGTTTGTATGAATATAAAT
256 TTAATTTTTATAATATTAATA-ATTAGTATTATTTTATTT-TAATAAGTTTGTATGAATATAAAT
*
16763507 AATTGTTTTATGACAAAACAAAAGGTTATAACAATTGA
319 AATTGTTTTATGACAAAACAAAAGGTCATAACAATTGA
*
16763545 AAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTAGATAAATAGACTTATTTTTTA
1 AAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGATTAGATAAATAGA-TTATTTTTTA
*
16763610 AATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTGAATAGGCTTG
65 AAT-T-CTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATT-TGAATAAGCTTG
*
16763675 TATGATGAAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTG
127 TATGA-GAAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTG
* * ** * *
16763740 TTTAAATGGCCATAATTATTTGAACTGATTCGATAAACTGATTTATGTTTAAAATCTCTAACTTA
191 TTTAAATAGCCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTTAAATCTCTAACTTA
* * *
16763805 TCAATTTTTATAATATTAATAAAGTAATATTATTTTATTTTCAGATAAGCTTT-TATGAAT-TGA
256 TTAATTTTTATAATATTAAT-AATTAGTATTATTTTATTTT-A-ATAAG-TTTGTATGAATAT-A
* * * * * ** **
16763868 AACAATTGTTTTATGATAAAATATAAGGTCATCATGATTTT
316 AATAATTGTTTTATGACAAAACAAAAGGTCATAACAATTGA
* * * *
16763909 AAATAGATAATTATTCAAATAGTCAAAAATATTTGAACTTG-TTCA-ATAAATAGA-T-TTTTTT
1 AAATAAATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATT-AGATAAATAGATTATTTTTT
* * ** *
16763970 ---TTCTA---ATT--TCTTACTTA-ATTAATAAATTAGTATTATTTTATTTGGAATAAGCATG-
64 AAATTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTT-GAATAAGCTTGT
** * * * * *
16764025 -TGAGTTAAAGCAATTATTTTGTGACTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTGTT
128 ATGAGAAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTT
* * * * * *
16764089 CT-AATAGTCTTAACTATTTAAACTGATTC-AGCAAACACATTTATTTTTTAAATC-CTTACTTA
193 -TAAATAGCCATAACTATTTGAACTGATTCGA-TAAACAAATTTATTTTTTAAATCTCTAACTTA
* * * * * * * *
16764151 TTAATGTTTAGAATATTATTAAGTTAGCAATATTTTACTTTGAATAAGCTTGT-TGAACATAAAT
256 TTAATTTTTATAATATTAATAA-TTAGTATTATTTTA-TTTTAATAAGTTTGTATGAATATAAA-
* * * * *
16764215 TAAATGTTTTAAGACAAAACAAAA-ATCATAACTATTTAA
318 TAATTGTTTTATGACAAAACAAAAGGTCATAAC-AATTGA
* * * * * *
16764254 ATTAGTTCGATAAAGAGATTTAGTTTTTAAAT-CTCTTATTAA-T-TTTCAAAAT-AGTA-ATAA
1 A--A-----ATAAATA-A-TT-G--TTCAAATAGTC--A-TAACTATTT-GAACTGATTAGAT-A
* ** ** *
16764314 AATAGTATTATTTTATTTTGAATAATTTTGTA-TGAATAGAAACAACTGGTTTTGGAACATTAAT
49 AATAG-ATTA--TT-TTTT--A-AA--TTCTACT---T---ATTAA-T--TTTTCAAATATTAAT
* * *
16764378 AAATTTA-TATTATTTTATTTGAAATAAGCTTGAATGA-ATAGAACCAATTGTTTTATGACAAAA
96 AAA-TTAGTATTATTTTATTTG-AATAAGCTTGTATGAGA-AAAAACAATTGTTTTATGACAAAA
** * * * * **
16764441 CAAAAAGGTTGTAATGTTTTGAAATAGATAATT-ATTAAGATAGTCATAACTATTTGAGCCCATT
158 C-AAAAGGTCATAATGATTTGAAATAGATAATTGTTTAA-ATAGCCATAACTATTTGAACTGATT
* * * * *
16764505 CGATAAACAGATTTATTTTTTTAATTCTCTTACTTTTTAATTTTTAAAATATTAATAAATTAGTA
221 CGATAAACAAATTTA-TTTTTTAAATCTCTAACTTATTAATTTTTATAATATTAAT-AATTAGTA
* * *** * * * * *
16764570 TTATTTTATTTCAAATAAGCTAACATGAAT-TGAAACAATTGTTTTATTATAAAACAAAATGTTA
284 TTATTTTATTT-TAATAAGTTTGTATGAATAT-AAATAATTGTTTTATGACAAAACAAAAGGTCA
* * *
16764634 CAATGATTTG-
347 TAA-CAATTGA
* * * * * * *
16764644 AAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTG-TTTGGT-AA-A-CTTATTTTTTT
1 AAATAAATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTAGATAAATAGATTA-TTTTTT
* * * * * * ** *
16764705 AATTGTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATCCGAATAAGCTCG
64 AAAT-TCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT-ATTTGAATAAGCTTG
** * * *
16764770 TATG-GACGGAAACAATTGCTTTATGACAAAACAAAAAAGTCATAA-GAATTTGAAATAAATAAT
127 TATGAGA-AAAAACAATTGTTTTATGACAAAAC-AAAAGGTCATAATG-ATTTGAAATAGATAAT
* * * * * * * * * * * *
16764833 TATTCT-GATAGTCATAACGATTTGAATTTG-TTCAATAAATAGATTTCTTTTTAAAATCTTTTA
189 TGTT-TAAATAGCCATAACTATTTGAA-CTGATTCGATAAACAAATTTATTTTTTAAATCTCTAA
** * * * * *
16764896 CTTATTAATTGCCT-TAATATTAATAAATTTGTATTATTTTATTTGAAGTAAGCTTATATGAACA
252 CTTATTAATT-TTTATAATATTAAT-AATTAGTATTATTTTATTTTAA-TAAGTTTGTATGAATA
* ** * * * * * **
16764960 -AATAAAATCATTATATGACAAACCAAAAGGTTATAGCGATTCC
314 TAA-ATAATTGTTTTATGACAAAACAAAAGGTCATAACAATTGA
* * * * *
16765003 AAATCAATAATTGTTCAAATGGCCATAATTATTTAAACT
1 AAATAAATAATTGTTCAAATAGTCATAACTATTTGAACT
16765042 TGTTAGGAAA
Statistics
Matches: 1150, Mismatches: 239, Indels: 216
0.72 0.15 0.13
Matches are distributed among these distances:
344 14 0.01
345 30 0.03
346 35 0.03
347 97 0.08
348 4 0.00
349 1 0.00
350 34 0.03
351 5 0.00
352 5 0.00
353 4 0.00
354 2 0.00
356 8 0.01
357 18 0.02
358 66 0.06
359 123 0.11
360 117 0.10
361 14 0.01
362 58 0.05
363 144 0.13
364 93 0.08
365 6 0.01
366 1 0.00
367 1 0.00
368 3 0.00
369 2 0.00
370 1 0.00
371 4 0.00
372 4 0.00
373 3 0.00
374 3 0.00
376 3 0.00
377 6 0.01
378 11 0.01
379 4 0.00
381 2 0.00
382 2 0.00
383 4 0.00
384 4 0.00
385 31 0.03
386 4 0.00
387 24 0.02
388 59 0.05
389 14 0.01
390 65 0.06
391 17 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (356 bp):
AAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGATTAGATAAATAGATTATTTTTTAA
ATTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTTGAATAAGCTTGTATG
AGAAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTTAA
ATAGCCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTTAAATCTCTAACTTATTAAT
TTTTATAATATTAATAATTAGTATTATTTTATTTTAATAAGTTTGTATGAATATAAATAATTGTT
TTATGACAAAACAAAAGGTCATAACAATTGA
Found at i:16764184 original size:17 final size:18
Alignment explanation
Indices: 16764148--16764184 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
16764138 AAATCCTTAC
16764148 TTATTAATGTTTAGAATA
1 TTATTAATGTTTAGAATA
16764166 TTATTAA-G-TTAGCAATA
1 TTATTAATGTTTAG-AATA
16764183 TT
1 TT
16764185 TTACTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 7 0.39
18 7 0.39
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.49
Consensus pattern (18 bp):
TTATTAATGTTTAGAATA
Found at i:16764766 original size:177 final size:179
Alignment explanation
Indices: 16764372--16764858 Score: 482
Period size: 177 Copynumber: 2.7 Consensus size: 179
16764362 GTTTTGGAAC
* * * *
16764372 ATTAATAAATTTATATTATTTT-ATTTGAAATAAGCTTGAATGAATAGAACCAATTGTTTTATGA
1 ATTAATAAATTAATATTATTTTAATTCG-AATAAGC-TAAATGAATAGAAACAATTGTTTTATGA
** * *
16764436 CAAAACAAAAAGGTTGTAATGTTTTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAGCC
64 CAAAACAAAAAGGTTACAATGATTTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACC
* *
16764501 CATTCGATAAACAGATTTATTTTTTTAATTCTCTTACTTTTTAATTTTTAAAAT
129 CATTCGATAAAC--A-TTATTTTTTTAATTCTCTTACTTATTAATTGTTAAAAT
* * * * * *
16764555 ATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTAT
1 ATTAATAAATTAATATTATTTTAATTCGAATAAGCTAA-ATGAATAGAAACAATTGTTTTATGAC
* * * *
16764620 AAAAC-AAAATGTTACAATGATTTGAAGTAGATAATTATTCAA-ATAGTCATGACTATTTGAACT
65 AAAACAAAAAGGTTACAATGATTTGAAATAGATAATTATT-AAGATAGTCATAACTATTTGAACC
** * * * *
16764683 TGTTTGGTAAAC-TTATTTTTTTAATTGT-TTACTTATTAATTGTTGAAAT
129 CATTCGATAAACATTATTTTTTTAATTCTCTTACTTATTAATTGTTAAAAT
* * ** * ** *
16764732 ATTAATAAATCAATATTATTTTAATCCGAATAAGCTCGTATGGACGGAAACAATTGCTTTATGAC
1 ATTAATAAATTAATATTATTTTAATTCGAATAAGCT-AAATGAATAGAAACAATTGTTTTATGAC
* * * * ** *
16764797 AAAACAAAAAAGTCATAA-GAATTTGAAATAAATAATTATTCTGATAGTCATAACGATTTGAA
65 AAAACAAAAAGGTTACAATG-ATTTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAA
16764859 TTTGTTCAAT
Statistics
Matches: 249, Mismatches: 48, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
177 75 0.30
178 59 0.24
182 57 0.23
183 56 0.22
184 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (179 bp):
ATTAATAAATTAATATTATTTTAATTCGAATAAGCTAAATGAATAGAAACAATTGTTTTATGACA
AAACAAAAAGGTTACAATGATTTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACCCA
TTCGATAAACATTATTTTTTTAATTCTCTTACTTATTAATTGTTAAAAT
Found at i:16765245 original size:19 final size:19
Alignment explanation
Indices: 16765213--16765250 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
16765203 AAAATTAAAC
*
16765213 AATATAATATTTTTATTAT
1 AATATAATAATTTTATTAT
*
16765232 AATATTATAATTTTATTAT
1 AATATAATAATTTTATTAT
16765251 GATACTTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
AATATAATAATTTTATTAT
Found at i:16766439 original size:12 final size:12
Alignment explanation
Indices: 16766416--16766454 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
16766406 AAATATTATA
16766416 TAAT-TAATAAT
1 TAATCTAATAAT
* *
16766427 TAATTTTATAAT
1 TAATCTAATAAT
16766439 TAATCTAATAAT
1 TAATCTAATAAT
16766451 TAAT
1 TAAT
16766455 ATTCTAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATCTAATAAT
Found at i:16766474 original size:24 final size:23
Alignment explanation
Indices: 16766417--16766474 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
16766407 AATATTATAT
*
16766417 AATTAATAATTAATTTTATAATT
1 AATTAATAATTAATTTTATAATA
16766440 AATCTAATAATTAATATTCTA-AATA
1 AAT-TAATAATTAAT-TT-TATAATA
*
16766465 AATTATTAAT
1 AATTAATAAT
16766475 ATTATTAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 3 0.10
24 17 0.57
25 8 0.27
26 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (23 bp):
AATTAATAATTAATTTTATAATA
Found at i:16766484 original size:20 final size:19
Alignment explanation
Indices: 16766403--16766484 Score: 53
Period size: 19 Copynumber: 4.2 Consensus size: 19
16766393 TATTAAAATA
16766403 AATAAA-TATTATATAATT
1 AATAAATTATTATATAATT
*
16766421 AAT-AATTAATTTTATAATT
1 AATAAATT-ATTATATAATT
* * *
16766440 AATCTAATAATTA-ATATTCT
1 AAT-AAATTATTATATAAT-T
*
16766460 AAATAAATTATTAATATTATT
1 -AATAAATTATT-ATATAATT
16766481 AATA
1 AATA
16766485 TATTTAATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
17 2 0.04
18 4 0.08
19 17 0.35
20 14 0.29
21 8 0.17
22 3 0.06
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
AATAAATTATTATATAATT
Found at i:16767586 original size:120 final size:120
Alignment explanation
Indices: 16767377--16767597 Score: 340
Period size: 120 Copynumber: 1.8 Consensus size: 120
16767367 TTTACTAAAC
**
16767377 AAGTTCAAATAGTTATAGCTATTTGAACAATTATCTATTTCAAATTGCTATGACCTTATGTTTTG
1 AAGTTCAAATAGTTATAGCTATTTGAACAATTATCTATTTCAAATCACTATGACCTTATGTTTTG
*
16767442 TTATAAAACAATTTTTTCTATTCATACAAA-CTTATTTCAACTCTATTTACCGAAT
66 TCATAAAACAATTTTTTCTATTCATA-AAAGCTTATTTCAACTCTATTTACCGAAT
* *
16767497 AAGTTCAAATAGTTAT-GACTATTTGAACAATTATTTATTTCAAATCACTATGACCTTTTGTTTT
1 AAGTTCAAATAGTTATAG-CTATTTGAACAATTATCTATTTCAAATCACTATGACCTTATGTTTT
*
16767561 GTCATAAAACAATTATTTT-TGTTCATAAAAGCTTATT
65 GTCATAAAACAATT-TTTTCTATTCATAAAAGCTTATT
16767598 CGGATTAAAA
Statistics
Matches: 92, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
119 4 0.04
120 84 0.91
121 4 0.04
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (120 bp):
AAGTTCAAATAGTTATAGCTATTTGAACAATTATCTATTTCAAATCACTATGACCTTATGTTTTG
TCATAAAACAATTTTTTCTATTCATAAAAGCTTATTTCAACTCTATTTACCGAAT
Found at i:16769128 original size:181 final size:179
Alignment explanation
Indices: 16768868--16769639 Score: 684
Period size: 182 Copynumber: 4.3 Consensus size: 179
16768858 AATAATCTTA
* * * * * *
16768868 ATTTGAACCAGTTTGATAAACAAATTTATTTTTGAAA-AT-TT--TTATTAATCTTTGAAATATT
1 ATTTAAACTAGTTTGGTAAACAAA-TTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT
* * * *
16768929 AATAGATTAGTATTATTTTATTTCGAACAAACTTATATGAACAAAAACATTAGTTTTATGATAAA
65 AATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAACATT-GTTTTATGACAAA
* * *
16768994 ACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAATTAGTCATAATT
129 ACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAATTAGTCATAACT
* * * *
16769045 ATTTGAACTAGTTAGGTAAACAGAATTATTTTTTAATTCTCTTACTTATTAATTTTTGAAATTTT
1 ATTTAAACTAGTTTGGTAAACA-AATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT
* * ** *
16769110 AATAAATTTA-TTTTATTTTA-TTCTAAATAAGC-TAGTATGAATTGAAAATATTGTTTTATGAC
65 AATAAA-TTAGTATTATTTTATTTC-AAATAAACTTA-TATGAA-CAAAAACATTGTTTTATGAC
** **
16769172 AAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTC-ATATAGTTTTAACT
126 AAAACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAAT-TAGTCATAACT
* * * * * *
16769226 ATTTAATACTAGTTCGGCAAACAATTTTATTTTTTAAATCTCTTAATTATTAA-TGTTCAGAATA
1 ATTTAA-ACTAGTTTGGTAAACAA-ATTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATA
* * * * * *
16769290 TTATTAGATTAGTTTTATTTTATTTCAAATAAACTTGTATGAACAAAAATAATTGTTTTATGATA
63 TTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAA-CATTGTTTTATGACA
* * **
16769355 AAACAAAAGGTTATAACAATTTGAAATATACAATTGCTCTAA-TAGTCATAACT
127 AAACAAAAGGTTATAACAATTTGAAATAGATAATTATTC-AATTAGTCATAACT
* * * * *
16769408 ATTTAAATTAGTTTTGTAAACAGATTTATTTTTTAAATCTCTTACTTAGTAATTTTTGAAAGATT
1 ATTTAAACTAGTTTGGTAAACA-AATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT
* * * * * * * ** *
16769473 AATAAATTAGTATTGTTTTATTCCAAATAAGCTTGTGTGATAAAAAAACAACTGTCATATGACCA
65 AATAAATTAGTATTATTTTATTTCAAATAAACTTATATGA-ACAAAAAC-ATTGTTTTATGACAA
* * * * * * *
16769538 AACAAAAGGTAAGAACAATTTGAAATAGATAATTATTGAAATGGCCATAATT
128 AACAAAAGGTTATAACAATTTGAAATAGATAATTATTCAATTAGTCATAACT
* * * * *
16769590 ATTTGAA-TTGATTTGGTAAACATATTCACTTTTTAAATCACTTACTTATT
1 ATTTAAACTAG-TTTGGTAAACAAATT-ATTTTTTAAATCTCTTACTTATT
16769640 TGAATTTGTT
Statistics
Matches: 479, Mismatches: 90, Indels: 47
0.78 0.15 0.08
Matches are distributed among these distances:
177 29 0.06
178 3 0.01
179 2 0.00
180 7 0.01
181 195 0.41
182 238 0.50
183 4 0.01
184 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
ATTTAAACTAGTTTGGTAAACAAATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTA
ATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAACATTGTTTTATGACAAAAC
AAAAGGTTATAACAATTTGAAATAGATAATTATTCAATTAGTCATAACT
Found at i:16769625 original size:363 final size:362
Alignment explanation
Indices: 16768923--16769639 Score: 863
Period size: 363 Copynumber: 2.0 Consensus size: 362
16768913 TAATCTTTGA
* *
16768923 AATATTAATAGATTAGTATTATTTTATTTCGAACAAACTTATATGAACAAAAACATTAGTTTTAT
1 AATATTAATAGATTAGTATTATTTTATTTCAAACAAACTTATATGAACAAAAAAATTAGTTTTAT
* * * *
16768988 GATAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAATTAGTCATAATTATTTGAAC
66 GATAAAACAAAAGGTCATAACAATTTGAAATAGACAATTGCTCAATTAGTCATAACTATTTAAAC
* * **
16769053 TAGTTAGGTAAACAGAATTATTTTTTAATTCTCTTACTTATTAATTTTTGAAATTTTAATAAATT
131 TAGTTAGGTAAACAGAATTATTTTTTAAATCTCTTACTTAGTAATTTTTGAAAGATTAATAAATT
* * ** * * **
16769118 TATTTTATTTTATTCTAAATAAGCTAGTATGAATTGAAAATATTGTTTTATGACAAAACAAAAGG
196 TATATTATTTTATTCCAAATAAGCTAGTATGAATAAAAAAAACTGTCATATGACAAAACAAAAGG
* * ** * ***
16769183 TTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTAATACTAGTTCGGCAAAC
261 TAAGAACAATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTAATA-TAGTTCGGCAAAC
* * *
16769248 AATTTTATTTTTTAAATCTCTTAATTATTAATGTTCAG
325 AATTTCACTTTTTAAATCACTTAATTATTAATGTTCAG
* * * *
16769286 AATATTATTAGATTAGTTTTATTTTATTTCAAATAAACTTGTATGAACAAAAATAATT-GTTTTA
1 AATATTAATAGATTAGTATTATTTTATTTCAAACAAACTTATATGAACAAAAA-AATTAGTTTTA
* *
16769350 TGATAAAACAAAAGGTTATAACAATTTGAAATATACAATTGCTCTAA-TAGTCATAACTATTTAA
65 TGATAAAACAAAAGGTCATAACAATTTGAAATAGACAATTGCTC-AATTAGTCATAACTATTTAA
* ** *
16769414 ATTAGTTTTGTAAACAGATTTATTTTTTAAATCTCTTACTTAGTAATTTTTGAAAGATTAATAAA
129 ACTAGTTAGGTAAACAGAATTATTTTTTAAATCTCTTACTTAGTAATTTTTGAAAGATTAATAAA
* * * *
16769479 -TTAGTATTGTTTTATTCCAAATAAGCTTGTGTG-ATAAAAAAACAACTGTCATATGACCAAACA
194 TTTA-TATTATTTTATTCCAAATAAGCTAGTATGAAT-AAAAAA-AACTGTCATATGACAAAACA
* * * *
16769542 AAAGGTAAGAACAATTTGAAATAGATAATTATTGAAATGGCCATAATTATTTGAAT-T-GATTTG
256 AAAGGTAAGAACAATTTGAAATAGATAATTATTCAAATAGCCATAACTATTT-AATATAG-TTCG
* *
16769605 GTAAAC-ATATTCACTTTTTAAATCACTTACTTATT
319 GCAAACAAT-TTCACTTTTTAAATCACTTAATTATT
16769640 TGAATTTGTT
Statistics
Matches: 297, Mismatches: 49, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
362 8 0.03
363 225 0.76
364 61 0.21
365 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (362 bp):
AATATTAATAGATTAGTATTATTTTATTTCAAACAAACTTATATGAACAAAAAAATTAGTTTTAT
GATAAAACAAAAGGTCATAACAATTTGAAATAGACAATTGCTCAATTAGTCATAACTATTTAAAC
TAGTTAGGTAAACAGAATTATTTTTTAAATCTCTTACTTAGTAATTTTTGAAAGATTAATAAATT
TATATTATTTTATTCCAAATAAGCTAGTATGAATAAAAAAAACTGTCATATGACAAAACAAAAGG
TAAGAACAATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTAATATAGTTCGGCAAACA
ATTTCACTTTTTAAATCACTTAATTATTAATGTTCAG
Found at i:16769825 original size:229 final size:229
Alignment explanation
Indices: 16769423--16769868 Score: 495
Period size: 229 Copynumber: 1.9 Consensus size: 229
16769413 AATTAGTTTT
* * *
16769423 GTAAACAGATTTATTTTTTAAATCTCTTACTTAGTAATTTTTGAAAGATTAATAAATTAGTATTG
1 GTAAACAGATTTATTTTTTAAATCTCTTACATAGTAATTTTTCAAAGATTAATAAATTAGTATTA
* * * * * *
16769488 TTTTATTCCAAATAAGCTTGTGTGATAAAAAAACAACTGTCATATGACCAAACAAAAGGTAAGAA
66 ATTTATTCCAAATAAGCTTGTATGATAAAAAAACAACTATCATATAACCAAAAAAAAGATAAGAA
* * ** * * * * *
16769553 CAATTTGAAATAGATAATTATTGAAATGGCCATAATTATTTGAATTGATTTGGTAAACATATTCA
131 CAATATGAAATAGATAATTATTCAAATAACCATAATCATTTGAACTGATTCGATAAACAAATTCA
16769618 CT-TTTTAAATCACTTACTTATTTGAATTTGTTCA
196 -TATTTTAAATCACTTACTTATTTGAATTTGTTCA
* *
16769652 GTAAACAGATTTATTTTTTAAATCTCTTTCATATTAATTTTTCAAATG-TTAATAAATTAGTATT
1 GTAAACAGATTTATTTTTTAAATCTCTTACATAGTAATTTTTCAAA-GATTAATAAATTAGTATT
** * * * ** *
16769716 AATTTATTCTGAATATGCTTGTATGA-ATTAAAAACAATTATTTTATAACTAAAAAAAAGATCAA
65 AATTTATTCCAAATAAGCTTGTATGATA-AAAAAACAACTATCATATAACCAAAAAAAAGAT-AA
** * *** *
16769780 -AATGATATGAAATAGATAATTATTCTAATAATTTTAATCATTTGAACTGATTCGATAAATAAAT
128 GAACAATATGAAATAGATAATTATTCAAATAACCATAATCATTTGAACTGATTCGATAAACAAAT
* *
16769844 TTATATTTTAAATCTCTTACTTATT
193 TCATATTTTAAATCACTTACTTATT
16769869 AATTTTCAAA
Statistics
Matches: 176, Mismatches: 37, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
228 2 0.01
229 171 0.97
230 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.41
Consensus pattern (229 bp):
GTAAACAGATTTATTTTTTAAATCTCTTACATAGTAATTTTTCAAAGATTAATAAATTAGTATTA
ATTTATTCCAAATAAGCTTGTATGATAAAAAAACAACTATCATATAACCAAAAAAAAGATAAGAA
CAATATGAAATAGATAATTATTCAAATAACCATAATCATTTGAACTGATTCGATAAACAAATTCA
TATTTTAAATCACTTACTTATTTGAATTTGTTCA
Found at i:16770050 original size:180 final size:180
Alignment explanation
Indices: 16769653--16770093 Score: 473
Period size: 180 Copynumber: 2.4 Consensus size: 180
16769643 ATTTGTTCAG
* * * * * * *
16769653 TAAACAGATTTATTTTTTAAATCTCTTTCATATTAATTTTTCAAATGTTAATAAATTAGTATTAA
1 TAAATAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTATTAT
* * * *
16769718 TTTATTCTGAATATGCTTGTATGAATTAAAAACAATTATTTTATAACTAAAAAAAAGATCAAAAT
66 TTTATTCTAAATAAGCTTGTATGAA-TAAAAACAATTATTTTAGAACTAAAAAAAAGATCAAAAC
* *
16769783 GATATGAAATAGATAATTATTCTAATAATTTTAATCATTTGAACTGATTCGA
130 GATATGAAATAGATAATCATTC-AATAATCTTAATCATTTGAACTGATTCGA
* *
16769835 TAAATAAATTTATATTTTAAATCTCTTACTTATTAA-TTTTCAAAATATTATTAAATTAGTATTA
1 TAAATAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTTC-AAATATTATTAAATTAGTATTA
* * * *** * *
16769899 TTTTAATCCAAATAAGCTTGTAT-AA-ACAAAACAATTGTTTT-GCGTTAAAAGAAAAGGTCATA
65 TTTTATTCTAAATAAGCTTGTATGAATA-AAAACAATTATTTTAGAACTAAAA-AAAAGATCAAA
*
16769961 ACGATTTGAAATAGATAATCATTC-ATAGAGTCTTAA-CTATTTGAACT-AGTTCGA
128 ACGATATGAAATAGATAATCATTCAATA-A-TCTTAATC-ATTTGAACTGA-TTCGA
* * * ** * *
16770015 TAATTAGATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTGAAATATTATTAAATTAATATTAT
1 TAAATAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTATTAT
16770080 TTTATTCTAAATAA
66 TTTATTCTAAATAA
16770094 AATAGTATGA
Statistics
Matches: 217, Mismatches: 34, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
178 3 0.01
179 9 0.04
180 125 0.58
181 11 0.05
182 69 0.32
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (180 bp):
TAAATAGATTTATTTTTTAAATCTCTTACTTATTAAGTTTTCAAATATTATTAAATTAGTATTAT
TTTATTCTAAATAAGCTTGTATGAATAAAAACAATTATTTTAGAACTAAAAAAAAGATCAAAACG
ATATGAAATAGATAATCATTCAATAATCTTAATCATTTGAACTGATTCGA
Found at i:16770268 original size:25 final size:20
Alignment explanation
Indices: 16770213--16770258 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
16770203 CTTTTTAATA
16770213 AAACAATATTATTTTATTTC
1 AAACAATATTATTTTATTTC
16770233 AAACAATATTATTTTATTTC
1 AAACAATATTATTTTATTTC
16770253 AAACAA
1 AAACAA
16770259 ACTTATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (20 bp):
AAACAATATTATTTTATTTC
Found at i:16770873 original size:181 final size:180
Alignment explanation
Indices: 16770634--16771664 Score: 836
Period size: 181 Copynumber: 5.8 Consensus size: 180
16770624 TGGTAAATAG
* * *
16770634 ATTTATTTATTAAATC-T--CTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTC
1 ATTTATTTTTTAAATCTTCACTTATTAAATTTTATAATATTAATAAATTAATATTATTTTATTTC
* * * * * * *
16770696 AAACAAACTTATATGAACAAAAATATTTATTTTACGACAAAACAAAAGGTCATAACAATTTGAAA
66 AAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
* * * * * * *
16770761 TAGATAATTATTCATATAGCCTTAACTATTTGAATTGGTTTGGTAAACAA
131 TAGATAATTGTTCAAATAGCCATAACTATTTGAACTGATTCGATAAACAA
* * * * * *
16770811 ATTTATTTTTTAAATCTGTCAGTTATTAAATTTCATAATATTACTAGATTAGTGTTATTTTATTT
1 ATTTATTTTTTAAATCT-TCACTTATTAAATTTTATAATATTAATAAATTAATATTATTTTATTT
* * * * * *
16770876 CGAATAAGCTTGTATAAAGATAAATAATTGTTTTATGACAAAACAAAAGGTTATAACAA-TTGAA
65 CAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTG-A
* * *
16770940 AATATATAATTGTTCAAATAGTCATAACTATTTGAATTGATTCGATAAACAA
129 AATAGATAATTGTTCAAATAGCCATAACTATTTGAACTGATTCGATAAACAA
* * *
16770992 ATTTATTTTTTAAATCTCCTACTTATT-AATTTTTTAAATATTAATAAATTAGTATTATTTTATT
1 ATTTATTTTTTAAATCTTC-ACTTATTAAATTTTAT-AATATTAATAAATTAATATTATTTTATT
** * ** * **
16771056 TTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGA
64 TCAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGA
* * * * *
16771121 AATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCAATAAACTA
129 AATAGATAATTGTTCAAATAGCCATAACTATTTGAACTGATTCGATAAACAA
* * * * *
16771173 ATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTT
1 ATTTATTTTTTAAATCT-TCACTTATTAAATTTTATAATATTAATAAATTAATATTATTTTATTT
* * ** * * * * *
16771238 CAGATAAGCTTTTATGAACTGAAACAATTGTTTTATGATAAAATATAAGGTCATAACGATTTTAA
65 CAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAA
* * * * * * * *
16771303 ATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTATTTGGTAAATAG
130 ATAGATAATTGTTCAAATAGCCATAACTATTTGAACTGATTCGATAAACAA
* * * *
16771354 ATTT-TTTTTCT-AAT-TT--CTTAAT-AATTTTTTGAATGTTAATAAATTAGTATTATTTTATT
1 ATTTATTTTT-TAAATCTTCACTTATTAAATTTTAT-AATATTAATAAATTAATATTATTTTATT
** * **** * * * * * **
16771413 TTGAATAAGCATGTATGAGTTGAAGCAATTATTTTATAACTAAACAAAAGGTCAAAATGATTTGA
64 TCAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGA
** * * * * *
16771478 AATAGATAATTGTTGTAATAGTCTTAACTATTTGAATTGATTC-AGCAAACAC
129 AATAGATAATTGTTCAAATAGCCATAACTATTTGAACTGATTCGA-TAAACAA
* * * * ** *
16771530 ATTTATTTTGTAAATCCTT-ACTTATT-AATGTTTAGAATATTATTAATTTAGCAATATTTTACT
1 ATTTATTTTTTAAAT-CTTCACTTATTAAAT-TTTATAATATTAATAAATTAATATTATTTTA-T
* ** ** * * *
16771593 TT-GAATAAGCTTGT-TGAACAGAAATTAAAAGTTTTAGGACAAAACAAAA-ATCATAACAATTG
63 TTCAAATAAGCTTGTATGAACA-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTT
*
16771655 GAGATAGATA
127 GAAATAGATA
16771665 TTATAATTTA
Statistics
Matches: 680, Mismatches: 153, Indels: 40
0.78 0.18 0.05
Matches are distributed among these distances:
175 6 0.01
176 121 0.18
177 22 0.03
178 1 0.00
179 24 0.04
180 76 0.11
181 421 0.62
182 9 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
ATTTATTTTTTAAATCTTCACTTATTAAATTTTATAATATTAATAAATTAATATTATTTTATTTC
AAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
TAGATAATTGTTCAAATAGCCATAACTATTTGAACTGATTCGATAAACAA
Found at i:16771316 original size:362 final size:355
Alignment explanation
Indices: 16770650--16771664 Score: 1001
Period size: 362 Copynumber: 2.8 Consensus size: 355
16770640 TTATTAAATC
* * ** * * * **
16770650 TCTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTCAAACAAACTTATATGAACA
1 TCTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATGA
* * * ** * * *
16770715 AAAATATTTATTTTACGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCATATAG
66 AAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTTAAATAG
* ** * * * * *
16770780 CCTTAACTATTTGAATTGGTTTGGTAAACAAATTTATTTTTTAAATCTGTCAGTTATTAAATTTC
131 CCTTAACTATTTGAATTGATTCAGTAAAC-AATTTA-TTTTTAAATCTCTAACTTATTAATTTTT
* * * * * *
16770845 ATAATATTACTAGATTAGTGTTATTTTATTTCGAATAAGCTTGTATAAAGATAAATAATTGTTTT
194 ATAATATTAATAAAGTAATATTATTTTATTTCGAATAAGCTTGTATAAAGATAAACAATTGTTTT
* * * *
16770910 ATGACAAAACAAAAGGTTATAACAATTGAAAATATATAATTGTTCAAATAGTCATAACTATTTGA
259 ATGACAAAACAAAAGGTCATAACAATTGAAAATAGATAATTGTTCAAATAGTCAAAAATATTTGA
16770975 A-TTGATTCGATAAACAAATTTATTTTT-TAAATCT
324 ACTT-ATTCGATAAACAAATTT-TTTTTCT-AAT-T
*
16771009 CCTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTGAATAGGCTTGTATGA
1 --T-CTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGA
* *
16771074 TGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAA
63 TGAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTTAAA
* * * * * *
16771139 TGGCCATAATTATTTGAACTGATTCAATAAACTAATTTATGTTTTAAATCTCTAACTTATCAATT
128 TAGCCTTAACTATTTGAATTGATTCAGTAAAC-AATTTAT-TTTTAAATCTCTAACTTATTAATT
* * *
16771204 TTTATAATATTAATAAAGTAATATTATTTTATTTC-AGATAAGCTTTTATGAA-CTGAAACAATT
191 TTTATAATATTAATAAAGTAATATTATTTTATTTCGA-ATAAGCTTGTATAAAGAT-AAACAATT
* * * * **
16771267 GTTTTATGATAAAATATAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCAAAAATA
254 GTTTTATGACAAAACAAAAGGTCATAACAATTGAAAATAGATAATTGTTCAAATAGTCAAAAATA
* * * *
16771332 TTTGAACTTATTTGGTAAATAGATTTTTTTTCTAATT
319 TTTGAACTTATTCGATAAACAAATTTTTTTTCTAATT
* * * *
16771369 TCTTAATAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTTGAATAAGCATGTATGAGTT
1 TCTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGA--T
* * * *
16771434 G--AAGCAATTATTTTATAACTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTGTTGT-AA
64 GAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTT-TAAA
* * * *
16771496 TAGTCTTAACTATTTGAATTGATTCAGCAAACACATTTATTTTGTAAATC-CTTACTTATTAATG
128 TAGCCTTAACTATTTGAATTGATTCAGTAAACA-ATTTATTTT-TAAATCTCTAACTTATTAATT
* * ** ** * ** *
16771560 TTTAGAATATTATTAATTTAGCAATATTTTACTTT-GAATAAGCTTGT-TGAACAGA-AATTAAA
191 TTTATAATATTAATAAAGTAATATTATTTTA-TTTCGAATAAGCTTGTAT-AA-AGATAAACAAT
* * * * *
16771622 AGTTTTAGGACAAAACAAAA-ATCATAACAATTGGAGATAGATA
253 TGTTTTATGACAAAACAAAAGGTCATAACAATTGAAAATAGATA
16771665 TTATAATTTA
Statistics
Matches: 536, Mismatches: 102, Indels: 38
0.79 0.15 0.06
Matches are distributed among these distances:
355 19 0.04
356 68 0.13
357 151 0.28
358 2 0.00
359 2 0.00
360 1 0.00
361 12 0.02
362 279 0.52
363 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (355 bp):
TCTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGATGA
AAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTTAAATAG
CCTTAACTATTTGAATTGATTCAGTAAACAATTTATTTTTAAATCTCTAACTTATTAATTTTTAT
AATATTAATAAAGTAATATTATTTTATTTCGAATAAGCTTGTATAAAGATAAACAATTGTTTTAT
GACAAAACAAAAGGTCATAACAATTGAAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAAC
TTATTCGATAAACAAATTTTTTTTCTAATT
Found at i:16771708 original size:22 final size:20
Alignment explanation
Indices: 16771673--16771718 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
16771663 TATTATAATT
*
16771673 TAATTATAATTATTCAATTTTA
1 TAATTATAA-TATT-AATTATA
16771695 TAATTAATAATATTAATTATA
1 TAATT-ATAATATTAATTATA
16771716 TAA
1 TAA
16771719 ATTTATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 9 0.41
23 4 0.18
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTATAATATTAATTATA
Found at i:16771721 original size:22 final size:21
Alignment explanation
Indices: 16771673--16771727 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
16771663 TATTATAATT
*
16771673 TAATTATAATTATTCAATTTTA
1 TAATTATAA-TATTCAATTATA
16771695 TAATTAATAATATT-AATTATA
1 TAATT-ATAATATTCAATTATA
16771716 TAAATTTATAAT
1 T-AA-TTATAAT
16771728 TTAGTACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 7 0.24
22 16 0.55
23 6 0.21
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATTATAATATTCAATTATA
Found at i:16771825 original size:20 final size:20
Alignment explanation
Indices: 16771791--16771896 Score: 64
Period size: 20 Copynumber: 5.3 Consensus size: 20
16771781 ATTAGAAAAT
* *
16771791 TATAATTATACATAATTATA
1 TATAATTTTATATAATTATA
16771811 TATAATTTTATATAA-TATA
1 TATAATTTTATATAATTATA
16771830 CT-TAATTAGATTATACTAATT-TAA
1 -TATAATT---TTATA-TAATTAT-A
**
16771854 TATAGATTAAATATAATTAT-
1 TATA-ATTTTATATAATTATA
16771874 TAT-ATTTTATATAA-TATA
1 TATAATTTTATATAATTATA
16771892 -ATAAT
1 TATAAT
16771897 AAAATAGTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 26
0.68 0.06 0.26
Matches are distributed among these distances:
17 5 0.07
18 11 0.16
19 9 0.13
20 17 0.25
21 5 0.07
22 9 0.13
23 5 0.07
24 4 0.06
25 3 0.04
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (20 bp):
TATAATTTTATATAATTATA
Found at i:16771945 original size:20 final size:19
Alignment explanation
Indices: 16771896--16771953 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
16771886 AATATAATAA
16771896 TAAAATAGTATTAT-TTAATT
1 TAAAATA-TATTATATT-ATT
*
16771916 TAAGATATATTATATTATT
1 TAAAATATATTATATTATT
*
16771935 TAATAATATATAATATTAT
1 TAA-AATATATTATATTAT
16771954 AATTTAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 12 0.36
20 21 0.64
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TAAAATATATTATATTATT
Found at i:16772256 original size:20 final size:20
Alignment explanation
Indices: 16772219--16772257 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16772209 TTTAAATTTG
*
16772219 TTTAATTTAAATATTAAATA
1 TTTAATTTAAATAATAAATA
**
16772239 TTTAATTTCTATAATAAAT
1 TTTAATTTAAATAATAAAT
16772258 TTATAGTTAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTAATTTAAATAATAAATA
Found at i:16772460 original size:20 final size:20
Alignment explanation
Indices: 16772435--16772513 Score: 64
Period size: 18 Copynumber: 4.2 Consensus size: 20
16772425 TGCTAACAAT
16772435 TTATATATAATATAATATAA
1 TTATATATAATATAATATAA
16772455 -T-TATATAATATAAT-TAA
1 TTATATATAATATAATATAA
* *
16772472 TATTTATTTAATATTAATAATAA
1 T-TATATATAATA-TAAT-ATAA
16772495 --ATATA-AATATAA-ATAA
1 TTATATATAATATAATATAA
16772511 TTA
1 TTA
16772514 ATTTTAATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 18
0.70 0.04 0.26
Matches are distributed among these distances:
16 4 0.08
17 3 0.06
18 17 0.35
19 6 0.12
20 11 0.23
21 4 0.08
23 3 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATATATAATATAATATAA
Found at i:16772462 original size:8 final size:9
Alignment explanation
Indices: 16772436--16772509 Score: 50
Period size: 9 Copynumber: 8.2 Consensus size: 9
16772426 GCTAACAATT
16772436 TATATATAA
1 TATATATAA
16772445 TATAATATAA
1 TAT-ATATAA
16772455 T-TATATAA
1 TATATATAA
16772463 TATA-ATTAA
1 TATATA-TAA
*
16772472 TATTTATTTAA
1 TA--TATATAA
16772483 TAT-TAATAA
1 TATAT-ATAA
*
16772492 TAAATATAA
1 TATATATAA
16772501 -ATATA-AA
1 TATATATAA
16772508 TA
1 TA
16772510 ATTAATTTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 19
0.69 0.05 0.25
Matches are distributed among these distances:
7 2 0.04
8 14 0.27
9 21 0.40
10 8 0.15
11 7 0.13
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATATAA
Found at i:16772462 original size:13 final size:13
Alignment explanation
Indices: 16772444--16772470 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16772434 TTTATATATA
16772444 ATATAATATAATT
1 ATATAATATAATT
16772457 ATATAATATAATT
1 ATATAATATAATT
16772470 A
1 A
16772471 ATATTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATAATATAATT
Found at i:16772620 original size:16 final size:16
Alignment explanation
Indices: 16772573--16772624 Score: 60
Period size: 14 Copynumber: 3.6 Consensus size: 16
16772563 ATTATTAATA
*
16772573 AAATAATT-TA-ATAT
1 AAATAATTATATATTT
16772587 AAA-AATTATATA-TT
1 AAATAATTATATATTT
16772601 -AATAATTATATATTT
1 AAATAATTATATATTT
16772616 AAATAATTA
1 AAATAATTA
16772625 ATAAAACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
13 6 0.19
14 15 0.47
15 3 0.09
16 8 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATAATTATATATTT
Found at i:16773132 original size:10 final size:10
Alignment explanation
Indices: 16773113--16773194 Score: 50
Period size: 10 Copynumber: 8.5 Consensus size: 10
16773103 ATAATTGTTG
16773113 TTATTAATAA
1 TTATTAATAA
*
16773123 TTATTTATAA
1 TTATTAATAA
**
16773133 -TAACAATAA
1 TTATTAATAA
*
16773142 TTA-GAATAA
1 TTATTAATAA
16773151 TATATT-ATAA
1 T-TATTAATAA
16773161 -TATT-AT-A
1 TTATTAATAA
*
16773168 TTGTTATATAA
1 TTATTA-ATAA
16773179 TTTATTAATAA
1 -TTATTAATAA
16773190 TTATT
1 TTATT
16773195 TATTATTTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
7 1 0.02
8 9 0.16
9 12 0.21
10 24 0.43
11 5 0.09
12 5 0.09
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.50
Consensus pattern (10 bp):
TTATTAATAA
Found at i:16773200 original size:26 final size:25
Alignment explanation
Indices: 16773158--16773231 Score: 62
Period size: 26 Copynumber: 2.9 Consensus size: 25
16773148 TAATATATTA
* **
16773158 TAATATTATATTGTTATATAATTTAT
1 TAATATTAT-TTATTATATAATAAAT
*
16773184 TAATAATTATTTATTATTTAATAAAT
1 TAAT-ATTATTTATTATATAATAAAT
16773210 T-A-ATTATTTTATTATAATAATA
1 TAATATTA-TTTATTAT-ATAATA
16773232 TATATTTCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.10
24 8 0.20
25 6 0.15
26 17 0.43
27 5 0.12
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (25 bp):
TAATATTATTTATTATATAATAAAT
Found at i:16773360 original size:32 final size:32
Alignment explanation
Indices: 16773323--16773400 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 32
16773313 ATAGTCTTAA
16773323 ATATATT-TTAAAT-AATATATAAATTTTAAAAT
1 ATATATTATTAAATAAAT-TAT-AATTTTAAAAT
* * *
16773355 GTATATTATTATATAAATTATAATTTTAAATT
1 ATATATTATTAAATAAATTATAATTTTAAAAT
*
16773387 ATATATTATCAAAT
1 ATATATTATTAAAT
16773401 TAATCAATAG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
32 27 0.71
33 8 0.21
34 3 0.08
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (32 bp):
ATATATTATTAAATAAATTATAATTTTAAAAT
Found at i:16773845 original size:19 final size:19
Alignment explanation
Indices: 16773823--16773861 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
16773813 TATTTATAAT
16773823 AATAATAATAATTTAATTA
1 AATAATAATAATTTAATTA
* * *
16773842 AATATTTATATTTTAATTA
1 AATAATAATAATTTAATTA
16773861 A
1 A
16773862 TTCAAATAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AATAATAATAATTTAATTA
Found at i:16774975 original size:22 final size:22
Alignment explanation
Indices: 16774950--16775044 Score: 78
Period size: 22 Copynumber: 4.4 Consensus size: 22
16774940 TTCAATTTTT
16774950 TAATAAA-ATTAATATTATTATA
1 TAATAAATATTAATATTA-TATA
* *
16774972 TAATTAA-ATTAATAATATA-A
1 TAATAAATATTAATATTATATA
16774992 TAATATAATATT--TATTATAGTA
1 TAATA-AATATTAATATTATA-TA
16775014 TAATAAATATTTAATA-TAT-TA
1 TAATAAATA-TTAATATTATATA
16775035 TAATTAAATA
1 TAA-TAAATA
16775045 AATTAAATAT
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
20 11 0.18
21 13 0.21
22 32 0.52
23 3 0.05
24 2 0.03
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (22 bp):
TAATAAATATTAATATTATATA
Found at i:16774978 original size:17 final size:18
Alignment explanation
Indices: 16774950--16775001 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
16774940 TTCAATTTTT
*
16774950 TAATAAAATTAATATT-A
1 TAATATAATTAATATTAA
*
16774967 TTATATAATTAA-ATTAA
1 TAATATAATTAATATTAA
16774984 TAATATAA-TAATA-TAA
1 TAATATAATTAATATTAA
16775000 TA
1 TA
16775002 TTTATTATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 11 0.37
17 19 0.63
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATATAATTAATATTAA
Found at i:16775024 original size:21 final size:21
Alignment explanation
Indices: 16774984--16775062 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
16774974 ATTAAATTAA
16774984 TAATATA--ATAATATAATATT
1 TAATATAGTATAATA-AATATT
*
16775004 TATTATAGTATAATAAATATT
1 TAATATAGTATAATAAATATT
*
16775025 TAATATATTATAATTAAATAAATT
1 TAATATAGTATAA-TAAAT--ATT
* *
16775049 AAATATATTATAAT
1 TAATATAGTATAAT
16775063 GATAAACATT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.12
21 17 0.34
22 11 0.22
23 1 0.02
24 15 0.30
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (21 bp):
TAATATAGTATAATAAATATT
Found at i:16775033 original size:26 final size:24
Alignment explanation
Indices: 16774961--16775062 Score: 74
Period size: 24 Copynumber: 4.4 Consensus size: 24
16774951 AATAAAATTA
* *
16774961 ATATTATTATATAATTAAATT-AAT
1 ATATTATAAT-TAAATAAATTAAAT
* *
16774985 A-A-TATAA-TAATATAATATTTATT
1 ATATTATAATTAA-ATAA-ATTAAAT
* *
16775008 ATAGTATAA-TAAAT--ATTTAAT
1 ATATTATAATTAAATAAATTAAAT
16775029 ATATTATAATTAAATAAATTAAAT
1 ATATTATAATTAAATAAATTAAAT
16775053 ATATTATAAT
1 ATATTATAAT
16775063 GATAAACATT
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
20 3 0.05
21 17 0.27
22 12 0.19
23 4 0.06
24 20 0.31
25 8 0.12
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (24 bp):
ATATTATAATTAAATAAATTAAAT
Found at i:16775067 original size:22 final size:20
Alignment explanation
Indices: 16774950--16775068 Score: 73
Period size: 22 Copynumber: 5.5 Consensus size: 20
16774940 TTCAATTTTT
16774950 TAATA-AAATTAATATTATTA
1 TAATATAAATTAATA-TATTA
*
16774970 T-ATAATTAAATTAATAATATAA
1 TAAT-A-TAAATTAAT-ATATTA
* *
16774992 TAATATAATATTTATTATAGTA
1 TAATATAA-A-TTAATATATTA
16775014 TAATA-AATATTTAATATATTA
1 TAATATAA-A-TTAATATATTA
16775035 TAATTAAATAAATTAAATATATTA
1 TAA-T--ATAAATT-AATATATTA
16775059 TAATGATAAA
1 TAAT-ATAAA
16775069 CATTTACTTA
Statistics
Matches: 80, Mismatches: 7, Indels: 22
0.73 0.06 0.20
Matches are distributed among these distances:
19 2 0.03
20 2 0.03
21 20 0.25
22 30 0.38
23 10 0.12
24 14 0.17
25 2 0.03
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TAATATAAATTAATATATTA
Found at i:16775101 original size:14 final size:13
Alignment explanation
Indices: 16775079--16775150 Score: 50
Period size: 14 Copynumber: 5.9 Consensus size: 13
16775069 CATTTACTTA
*
16775079 TTAATTATTATAAT
1 TTAACTATTAT-AT
16775093 TTAACTATTATAT
1 TTAACTATTATAT
16775106 TT-A--ATT-TA-
1 TTAACTATTATAT
16775114 TTAACTATTAT-T
1 TTAACTATTATAT
* *
16775126 ATATCTATTAATAT
1 TTAACTATT-ATAT
16775140 TTAA-TATTATA
1 TTAACTATTATA
16775151 GATTGTTATT
Statistics
Matches: 46, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
8 2 0.04
9 3 0.07
10 3 0.07
11 3 0.07
12 12 0.26
13 10 0.22
14 13 0.28
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAACTATTATAT
Found at i:16775115 original size:35 final size:35
Alignment explanation
Indices: 16775076--16775149 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
16775066 AAACATTTAC
* *
16775076 TTATTAATTATTATAATTTAACTATT-ATATTTAAT-
1 TTATTAACTATTAT--TATAACTATTAATATTTAATA
*
16775111 TTATTAACTATTATTATATCTATTAATATTTAATA
1 TTATTAACTATTATTATAACTATTAATATTTAATA
16775146 TTAT
1 TTAT
16775150 AGATTGTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 8 0.24
34 9 0.26
35 17 0.50
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (35 bp):
TTATTAACTATTATTATAACTATTAATATTTAATA
Found at i:16775565 original size:21 final size:23
Alignment explanation
Indices: 16775524--16775566 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
16775514 AATAACAATA
*
16775524 ATATAATTAGTAATGTAATATTG
1 ATATAATTAGCAATGTAATATTG
16775547 ATATAATTA-CAAT-TAATATT
1 ATATAATTAGCAATGTAATATT
16775567 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (23 bp):
ATATAATTAGCAATGTAATATTG
Found at i:16776069 original size:20 final size:21
Alignment explanation
Indices: 16776035--16776096 Score: 81
Period size: 20 Copynumber: 2.9 Consensus size: 21
16776025 ATTTAAAACA
16776035 ATTATATTAATTATATTATAAAT
1 ATTA-ATT-ATTATATTATAAAT
*
16776058 ATTAA-TATTATATTACAAAT
1 ATTAATTATTATATTATAAAT
*
16776078 ATTAATTATTATTTTATAA
1 ATTAATTATTATATTATAA
16776097 TTAATATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 18 0.51
21 12 0.34
22 1 0.03
23 4 0.11
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTAATTATTATATTATAAAT
Found at i:16776178 original size:20 final size:20
Alignment explanation
Indices: 16776039--16776210 Score: 69
Period size: 19 Copynumber: 8.8 Consensus size: 20
16776029 AAAACAATTA
*
16776039 TATTAATTATATTATAAATAT
1 TATTAATTATATTATATAT-T
* * *
16776060 TAAT-ATTATATTACA-A-A
1 TATTAATTATATTATATATT
*
16776077 TATTAATTATTATTTTATAATT
1 TATTAATTA-TATTATAT-ATT
* * *
16776099 AATATAAATAAATTAT-TATT
1 TAT-TAATTATATTATATATT
* *
16776119 TA-TAATTACATTAGATCA-T
1 TATTAATTATATTATAT-ATT
* * *
16776138 TA-GAATAATATT-TATA-G
1 TATTAATTATATTATATATT
16776155 TATTAATTATATTATATATT
1 TATTAATTATATTATATATT
* *
16776175 TATT-ATTATATTATTTGAAT
1 TATTAATTATATTATAT-ATT
16776195 TATTAATCTA-ATTATA
1 TATTAAT-TATATTATA
16776211 ATTAATTTAT
Statistics
Matches: 111, Mismatches: 26, Indels: 28
0.67 0.16 0.17
Matches are distributed among these distances:
17 6 0.05
18 23 0.21
19 32 0.29
20 25 0.23
21 12 0.11
22 8 0.07
23 5 0.05
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
TATTAATTATATTATATATT
Found at i:16776263 original size:23 final size:22
Alignment explanation
Indices: 16776237--16776294 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
16776227 AGCAATAGTT
*
16776237 ATATTAATTATAAATTATTAATA
1 ATATTAATTAT-AACTATTAATA
16776260 ATATT-A-TATAACTATTAATA
1 ATATTAATTATAACTATTAATA
*
16776280 CTA-TAATTATTAACT
1 ATATTAATTA-TAACT
16776295 TAATTCTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 1 0.03
20 13 0.43
21 5 0.17
22 6 0.20
23 5 0.17
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTAATTATAACTATTAATA
Found at i:16776757 original size:28 final size:28
Alignment explanation
Indices: 16776726--16776802 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
16776716 TTGCTAATAG
*
16776726 TTATTAATATTAATAATATTAATATTTA
1 TTATTAATATTAATAATATTAATATTAA
* * *
16776754 TTATTAATAATATTAATCAAT-ATATTAA
1 TTATTAATATTAATAAT-ATTAATATTAA
*
16776782 TTAATAAT-TTAAATAATATTA
1 TTATTAATATT-AATAATATTA
16776803 TTAAATAAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
27 3 0.08
28 33 0.87
29 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
TTATTAATATTAATAATATTAATATTAA
Found at i:16776761 original size:22 final size:22
Alignment explanation
Indices: 16776733--16776815 Score: 91
Period size: 22 Copynumber: 3.7 Consensus size: 22
16776723 TAGTTATTAA
*
16776733 TATTAATAATATTAATATTTAT
1 TATTAATAATATTAATATATAT
16776755 TATTAATAATATTAATCAATATAT
1 TATTAATAATATTAAT--ATATAT
16776779 TAATTAATAAT-TTAA-ATAATAT
1 T-ATTAATAATATTAATAT-ATAT
16776801 TATTAAATAA-ATTAA
1 TATT-AATAATATTAA
16776816 AACTGATTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
21 5 0.09
22 30 0.56
24 10 0.19
25 9 0.17
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTAATAATATTAATATATAT
Found at i:16776793 original size:12 final size:13
Alignment explanation
Indices: 16776734--16776806 Score: 68
Period size: 12 Copynumber: 6.1 Consensus size: 13
16776724 AGTTATTAAT
16776734 ATTAATAATATTA
1 ATTAATAATATTA
*
16776747 A-T-AT-TTATT-
1 ATTAATAATATTA
16776756 ATTAATAATATTA
1 ATTAATAATATTA
*
16776769 ATCAAT-ATATTA
1 ATTAATAATATTA
16776781 ATTAATAAT-TTA
1 ATTAATAATATTA
* *
16776793 AATAATATTATTA
1 ATTAATAATATTA
16776806 A
1 A
16776807 ATAAATTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
9 1 0.02
10 5 0.10
11 4 0.08
12 26 0.54
13 12 0.25
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAATAATATTA
Found at i:16776970 original size:26 final size:27
Alignment explanation
Indices: 16776941--16776996 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
16776931 ATTTGTAAAC
16776941 ATTT-ATTATTGTTT-ATT-AAAATTAAT
1 ATTTAATT-TTGTTTAATTAAAAATT-AT
16776967 ATTTAATTTTGTTTAATTAAAAATTAT
1 ATTTAATTTTGTTTAATTAAAAATTAT
16776994 ATT
1 ATT
16776997 ACAATTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 10 0.37
27 11 0.41
28 6 0.22
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (27 bp):
ATTTAATTTTGTTTAATTAAAAATTAT
Found at i:16777227 original size:13 final size:12
Alignment explanation
Indices: 16777199--16777267 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 12
16777189 AATTAATTAG
16777199 AAATTAT-ATTT
1 AAATTATAATTT
*
16777210 GAATTAATAATTT
1 AAATT-ATAATTT
16777223 AAATTATAATTTTT
1 AAATTATAA--TTT
16777237 ATAATTATAAATTT
1 A-AATTAT-AATTT
16777251 -AA-TATAATTT
1 AAATTATAATTT
16777261 -AATTATA
1 AAATTATA
16777268 TTACTATTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
10 7 0.14
11 11 0.22
12 8 0.16
13 8 0.16
14 7 0.14
15 6 0.12
16 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (12 bp):
AAATTATAATTT
Found at i:16778069 original size:31 final size:33
Alignment explanation
Indices: 16778025--16778087 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 33
16778015 TGTCTATAAA
*
16778025 TAATATATAAAATAAATTTATA-TATTATAATAG
1 TAATATATAAAAT-AATTTATACTAATATAATAG
16778058 TAAT-TAT-AAATAATTTATACTAATATAATA
1 TAATATATAAAATAATTTATACTAATATAATA
16778088 TAAATTTGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 8 0.29
31 13 0.46
32 3 0.11
33 4 0.14
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (33 bp):
TAATATATAAAATAATTTATACTAATATAATAG
Found at i:16778329 original size:19 final size:18
Alignment explanation
Indices: 16778307--16778354 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 18
16778297 TGTCAATAAT
16778307 TAAATAATACTATTATTAG
1 TAAATAATACTA-TATTAG
16778326 TAAATTAATTTACTATATTAG
1 TAAA-TAA--TACTATATTAG
16778347 T-AATAATA
1 TAAATAATA
16778355 TAATTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
17 2 0.08
19 7 0.27
20 5 0.19
21 7 0.27
22 5 0.19
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (18 bp):
TAAATAATACTATATTAG
Found at i:16778332 original size:24 final size:21
Alignment explanation
Indices: 16778304--16778356 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
16778294 AACTGTCAAT
16778304 AATTAAATAATACTATTATTAGTA
1 AATT-AAT-ATACTA-TATTAGTA
*
16778328 AATTAATTTACTATATTAGT-
1 AATTAATATACTATATTAGTA
16778348 AA-TAATATA
1 AATTAATATA
16778357 ATTTAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 6 0.22
20 2 0.07
21 7 0.26
22 5 0.19
23 3 0.11
24 4 0.15
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (21 bp):
AATTAATATACTATATTAGTA
Found at i:16778341 original size:22 final size:25
Alignment explanation
Indices: 16778314--16778367 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
16778304 AATTAAATAA
16778314 TACTATTATTAGT-A-AAT-TAATT
1 TACTATTATTAGTAATAATATAATT
16778336 TACTA-TATTAGTAATAATATAATT
1 TACTATTATTAGTAATAATATAATT
*
16778360 TAATATTA
1 TACTATTA
16778368 ATCCTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 7 0.26
22 6 0.22
23 3 0.11
24 9 0.33
25 2 0.07
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (25 bp):
TACTATTATTAGTAATAATATAATT
Found at i:16778751 original size:18 final size:20
Alignment explanation
Indices: 16778714--16778772 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 20
16778704 GTTTATAAAT
16778714 TTTATATATAATATTAATAA
1 TTTATATATAATATTAATAA
*
16778734 TTTATAT-TTATATT-ATAA
1 TTTATATATAATATTAATAA
*
16778752 -TTA-ATATAACATTACATAA
1 TTTATATATAATATTA-ATAA
16778771 TT
1 TT
16778773 AAATATATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 2 0.06
17 8 0.25
18 4 0.12
19 10 0.31
20 8 0.25
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTATATATAATATTAATAA
Found at i:16779240 original size:9 final size:9
Alignment explanation
Indices: 16779226--16779271 Score: 58
Period size: 9 Copynumber: 4.9 Consensus size: 9
16779216 ATGAAATATC
16779226 AATATAATT
1 AATATAATT
16779235 AATATAATT
1 AATATAATT
16779244 AA-ATTATATT
1 AATA-TA-ATT
16779254 AAATATAATT
1 -AATATAATT
16779264 AATATAAT
1 AATATAAT
16779272 ATTATTAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
8 1 0.03
9 21 0.64
10 6 0.18
11 4 0.12
12 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
AATATAATT
Found at i:16779277 original size:24 final size:24
Alignment explanation
Indices: 16779220--16779283 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 24
16779210 AAAAATATGA
*
16779220 AATATCAATATAATT-AATATAATT
1 AATAT-AATATTATTAAATATAATT
16779244 AA-AT--TA-TATTAAATATAATT
1 AATATAATATTATTAAATATAATT
16779264 AATATAATATTATTAAATAT
1 AATATAATATTATTAAATAT
16779284 TAACAATTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
19 3 0.09
20 13 0.38
21 2 0.06
23 4 0.12
24 12 0.35
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
AATATAATATTATTAAATATAATT
Found at i:16779380 original size:15 final size:16
Alignment explanation
Indices: 16779361--16779401 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
16779351 ATTATTATAA
16779361 AATAATTTATATAATT
1 AATAATTTATATAATT
*
16779377 -ATAA-TTAGTATATTT
1 AATAATTTA-TATAATT
16779392 AATAATTTAT
1 AATAATTTAT
16779402 CATCATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
14 3 0.14
15 10 0.48
16 5 0.24
17 3 0.14
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
AATAATTTATATAATT
Found at i:16779943 original size:31 final size:30
Alignment explanation
Indices: 16779890--16779976 Score: 90
Period size: 31 Copynumber: 2.8 Consensus size: 30
16779880 AATATATTAG
* *
16779890 TTTATATAAGTAATATTTAATTATTA-CTTA
1 TTTATATTATTAATATTTAATTATTATC-TA
16779920 TTTGAATATTATTAATA-TTAATTATTATCTA
1 TTT--ATATTATTAATATTTAATTATTATCTA
16779951 TTTATATTATT-ATAATTATAATTATT
1 TTTATATTATTAAT-ATT-TAATTATT
16779977 TACAAATATT
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
28 2 0.04
29 9 0.18
30 4 0.08
31 23 0.47
32 11 0.22
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (30 bp):
TTTATATTATTAATATTTAATTATTATCTA
Found at i:16780053 original size:20 final size:21
Alignment explanation
Indices: 16780014--16780057 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
16780004 ATCAATCAAA
16780014 TATTAATTATATTAATAATAT
1 TATTAATTATATTAATAATAT
16780035 TATTAATT-TA-TATATAATAT
1 TATTAATTATATTA-ATAATAT
16780055 TAT
1 TAT
16780058 ATATTATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.09
20 12 0.55
21 8 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTAATTATATTAATAATAT
Found at i:16780072 original size:30 final size:29
Alignment explanation
Indices: 16780022--16780093 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
16780012 AATATTAATT
*
16780022 ATATTAATAATATTATTAATT-TATATATA
1 ATATTAATAATATTAATAATTGT-TATATA
*
16780051 ATATTATATATTATTAATAATTGTTATATA
1 ATATTA-ATAATATTAATAATTGTTATATA
*
16780081 CATAATAA-AATAT
1 -ATATTAATAATAT
16780094 ATGACATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
29 10 0.28
30 20 0.56
31 6 0.17
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (29 bp):
ATATTAATAATATTAATAATTGTTATATA
Found at i:16780092 original size:88 final size:88
Alignment explanation
Indices: 16779924--16780093 Score: 190
Period size: 88 Copynumber: 1.9 Consensus size: 88
16779914 TACTTATTTG
* *
16779924 AATATTATTAATATTAATTATTATCTATTTATATTATTATAATTATAATTATTTACAAATATTAT
1 AATATTATTAATATTAATTATTATCTATTTATATTATAATAATTATAATTATTAACAAATATTAT
*
16779989 ATTAATAAATTAAATATCAATCA
66 ATTAATAAATAAAATATCAATCA
* *
16780012 AATATTAATT-ATATTAATAATATTAT-TAATTTATA-TATAAT-ATTATATATTATTAATAATT
1 AATATT-ATTAATATTAAT--TATTATCT-ATTTATATTATAATAATTATA-ATTATTAACAAAT
*
16780073 GTTATA-TACAT-AATAAAATAT
61 ATTATATTA-ATAAATAAAATAT
16780094 ATGACATTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
88 31 0.44
89 26 0.37
90 13 0.19
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.49
Consensus pattern (88 bp):
AATATTATTAATATTAATTATTATCTATTTATATTATAATAATTATAATTATTAACAAATATTAT
ATTAATAAATAAAATATCAATCA
Found at i:16780148 original size:18 final size:17
Alignment explanation
Indices: 16780118--16780151 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16780108 TATATCAGAT
*
16780118 TATTAATTTGATTATAC
1 TATTAATTAGATTATAC
16780135 TATTAAATTAGATTATA
1 TATT-AATTAGATTATA
16780152 TTAATAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (17 bp):
TATTAATTAGATTATAC
Found at i:16780159 original size:18 final size:18
Alignment explanation
Indices: 16780122--16780160 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
16780112 TCAGATTATT
* *
16780122 AATTTGATTATACTATTA
1 AATTAGATTATACTAATA
*
16780140 AATTAGATTATATTAATA
1 AATTAGATTATACTAATA
16780158 AAT
1 AAT
16780161 GGTTATTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (18 bp):
AATTAGATTATACTAATA
Found at i:16780690 original size:21 final size:22
Alignment explanation
Indices: 16780650--16780697 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
16780640 TGTAACTTAC
*
16780650 TAATTAAAATAAATAGTATAAT
1 TAATTAAAATAAATAATATAAT
*
16780672 TAATTAATAT-AATAATATAAT
1 TAATTAAAATAAATAATATAAT
16780693 TAATT
1 TAATT
16780698 TTATATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
TAATTAAAATAAATAATATAAT
Found at i:16781283 original size:23 final size:22
Alignment explanation
Indices: 16781221--16781297 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 22
16781211 TGCATTAATA
*
16781221 ATTAATAATATTATA-AATGACT
1 ATTAATAATATTATATAAT-ATT
16781243 ATTGAATAA-ATTAT-TAATATT
1 ATT-AATAATATTATATAATATT
16781264 ATTAATAATATTATACTAATATT
1 ATTAATAATATTATA-TAATATT
16781287 ATTAAT-ATATT
1 ATTAATAATATT
16781298 TAATAATCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
20 5 0.10
21 10 0.20
22 16 0.33
23 18 0.37
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (22 bp):
ATTAATAATATTATATAATATT
Found at i:16782785 original size:17 final size:17
Alignment explanation
Indices: 16782745--16782802 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
16782735 ATATTTGTAG
*
16782745 TAATTATAATCATTAAT-
1 TAATTATAATTA-TAATA
*
16782762 TACTTATAATTATAATA
1 TAATTATAATTATAATA
16782779 TAATTAT-ATTAATAATA
1 TAATTATAATT-ATAATA
*
16782796 TTATTAT
1 TAATTAT
16782803 TAGATAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
16 7 0.20
17 28 0.80
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATTATAATTATAATA
Found at i:16782793 original size:23 final size:23
Alignment explanation
Indices: 16782745--16782794 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
16782735 ATATTTGTAG
*
16782745 TAATTATAATCATTAATTACTTA
1 TAATTATAATCATTAATTAATTA
16782768 TAATTATAAT-A-TAATTATATTAA
1 TAATTATAATCATTAATTA-ATT-A
16782791 TAAT
1 TAAT
16782795 ATTATTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 3 0.12
23 15 0.62
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATTATAATCATTAATTAATTA
Found at i:16783518 original size:11 final size:10
Alignment explanation
Indices: 16783473--16783522 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
16783463 AGATTTAAGA
16783473 AATTAAATA-
1 AATTAAATAT
16783482 AATTAGAATAT
1 AATTA-AATAT
* *
16783493 ATTTAATTAT
1 AATTAAATAT
16783503 AATTAAATATT
1 AATTAAATA-T
16783514 AATTAAATA
1 AATTAAATA
16783523 AACTAATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 5 0.15
10 15 0.44
11 14 0.41
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
AATTAAATAT
Found at i:16783702 original size:24 final size:24
Alignment explanation
Indices: 16783651--16783714 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
16783641 GATTTTTACT
*
16783651 TAATTATTATTATA-T-ATTTATA
1 TAATTAATATTATATTAATTTATA
16783673 TAATTAATATTATATTAATTTATA
1 TAATTAATATTATATTAATTTATA
16783697 -ATATTAATAATTA-ATTAA
1 TA-ATTAAT-ATTATATTAA
16783715 AACCAATTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
22 13 0.35
23 2 0.05
24 18 0.49
25 4 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TAATTAATATTATATTAATTTATA
Found at i:16783830 original size:13 final size:13
Alignment explanation
Indices: 16783814--16783871 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
16783804 ATAATTCTTA
16783814 TAATATTAATAAT
1 TAATATTAATAAT
*
16783827 TAATA-TAATTTAT
1 TAATATTAA-TAAT
*
16783840 TCAAT-TAAATAA-
1 T-AATATTAATAAT
16783852 TAATATTAATAAT
1 TAATATTAATAAT
*
16783865 TTATATT
1 TAATATT
16783872 CTTATTGTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
11 3 0.09
12 10 0.29
13 17 0.49
14 5 0.14
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATTAATAAT
Found at i:16783833 original size:18 final size:18
Alignment explanation
Indices: 16783802--16783870 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 18
16783792 ATAATCTTTA
**
16783802 TAATAATTCTTATAATAT
1 TAATAATTAATATAATAT
16783820 TAATAATTAATATAAT-T
1 TAATAATTAATATAATAT
*
16783837 TATTCAATTAAATAATAATAT
1 TAAT-AATT-AAT-ATAATAT
*
16783858 TAATAATTTATAT
1 TAATAATTAATAT
16783871 TCTTATTGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
17 4 0.10
18 20 0.48
19 5 0.12
20 9 0.21
21 4 0.10
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (18 bp):
TAATAATTAATATAATAT
Found at i:16785639 original size:279 final size:279
Alignment explanation
Indices: 16785176--16785721 Score: 894
Period size: 279 Copynumber: 2.0 Consensus size: 279
16785166 GATAATATTG
* * * *
16785176 ATAATTTTTTATGAGCAGTTTTTCAATATACATTTAGTTTTACTCTTATTTTTTCATACAGTTTT
1 ATAATTCTTTATGAGCAGTTTTTCAATATACATTTAGTCTTACTCTTAGTTTTCCATACAGTTTT
** *
16785241 ATTTCTTAGTTTTTACACATAGCATGAGAGGTAGGACTTTCCTTCTGTTGCCCTTTCCTAATTTG
66 ATTTCTTAGTTTTTACACATAGCATGAGAGCCAGGACTTTCCTTCCGTTGCCCTTTCCTAATTTG
* * * * *
16785306 TCACGTGGAAGGCTTTTTTTCTTTTCACCTATATGTGATGGGGGCCTATTAAAAGTTTAAATAAT
131 TCACGTGGAAGGCTTCTTTCCTCTTCACCTACATGTGATGGGGGCCTATTAAAAGTTTAAATAAC
*
16785371 TAATATTATATCTAAAAATTATATAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTAGA
196 TAATACTATATCTAAAAATTATATAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTAGA
16785436 CAAGCACATAATTGTTTGT
261 CAAGCACATAATTGTTTGT
*
16785455 ATAATTCTTTATGAGCAGTTTTTCAATATACATTTAGTCTTACTCTTAGTTTTCCATATAGTTTT
1 ATAATTCTTTATGAGCAGTTTTTCAATATACATTTAGTCTTACTCTTAGTTTTCCATACAGTTTT
* * * *
16785520 ATTTCTTAGTTTTTCCACATGGTATGAGAGCCAGGACTTTCTTTCCGTTGCCCTTTCCTAATTTG
66 ATTTCTTAGTTTTTACACATAGCATGAGAGCCAGGACTTTCCTTCCGTTGCCCTTTCCTAATTTG
* * *
16785585 TCATGTGGAAGGCTTCTTTCCTCTTCACCTACATGTGATGTGGGCCTGTTAAAAGTTTAAATAAC
131 TCACGTGGAAGGCTTCTTTCCTCTTCACCTACATGTGATGGGGGCCTATTAAAAGTTTAAATAAC
*
16785650 TAATACTATATCTAAAAATTATTTAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTAGA
196 TAATACTATATCTAAAAATTATATAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTAGA
16785715 CAAGCAC
261 CAAGCAC
16785722 TTTAGGTTTA
Statistics
Matches: 245, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
279 245 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (279 bp):
ATAATTCTTTATGAGCAGTTTTTCAATATACATTTAGTCTTACTCTTAGTTTTCCATACAGTTTT
ATTTCTTAGTTTTTACACATAGCATGAGAGCCAGGACTTTCCTTCCGTTGCCCTTTCCTAATTTG
TCACGTGGAAGGCTTCTTTCCTCTTCACCTACATGTGATGGGGGCCTATTAAAAGTTTAAATAAC
TAATACTATATCTAAAAATTATATAATTTTTATTTTAATATTAATAATTTAATAAGTTTATTAGA
CAAGCACATAATTGTTTGT
Found at i:16786276 original size:15 final size:14
Alignment explanation
Indices: 16786256--16786285 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
16786246 ACTCATATTT
16786256 AATTATAATTAATTA
1 AATTATAA-TAATTA
16786271 AATTATAATAATTA
1 AATTATAATAATTA
16786285 A
1 A
16786286 TAATTCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTATAATAATTA
Found at i:16786295 original size:16 final size:16
Alignment explanation
Indices: 16786255--16786303 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
16786245 TACTCATATT
16786255 TAATTATAATTAATT-A
1 TAATTATAA-TAATTAA
16786271 -AATTATAATAATTAA
1 TAATTATAATAATTAA
* *
16786286 TAATTCTAATTATTAA
1 TAATTATAATAATTAA
16786302 TA
1 TA
16786304 TTCCAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 5 0.17
15 9 0.31
16 15 0.52
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATTATAATAATTAA
Found at i:16786842 original size:25 final size:24
Alignment explanation
Indices: 16786801--16786848 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
16786791 AGCTATTTTG
* *
16786801 TTAAATTAATTTAAAATGATAATT
1 TTAAAATAATTAAAAATGATAATT
*
16786825 TTAAAATAATTAATAAATTATAAT
1 TTAAAATAATTAA-AAATGATAAT
16786849 AATTATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
TTAAAATAATTAAAAATGATAATT
Found at i:16787229 original size:24 final size:23
Alignment explanation
Indices: 16787202--16787246 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
16787192 TATTTAAAAA
16787202 ATATTTTAATAATTATTATTAAAT
1 ATATTTTAATAATTA-TATTAAAT
* *
16787226 ATATTTTACTAGTTATATTAA
1 ATATTTTAATAATTATATTAA
16787247 TACCATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
ATATTTTAATAATTATATTAAAT
Found at i:16787388 original size:17 final size:17
Alignment explanation
Indices: 16787346--16787400 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
16787336 AAATAATTGG
16787346 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
16787362 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
16787380 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
16787397 TATA
1 TATA
16787401 TAAAATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
16 4 0.12
17 19 0.58
18 5 0.15
19 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:16787401 original size:21 final size:22
Alignment explanation
Indices: 16787354--16787407 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
16787344 GGTATAATTA
* *
16787354 AATA-ATAATCTAATTTAATTAT
1 AATATATAAT-TAATTAAAATAT
16787376 AATATATAATTAATTAAAATAT
1 AATATATAATTAATTAAAATAT
*
16787398 -ATATAAAATT
1 AATATATAATT
16787408 TAAATTTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.32
22 14 0.50
23 5 0.18
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AATATATAATTAATTAAAATAT
Found at i:16788124 original size:14 final size:14
Alignment explanation
Indices: 16788105--16788134 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
16788095 TTAAGAGATT
16788105 ATAAATTTAGTATA
1 ATAAATTTAGTATA
*
16788119 ATAAATTTATTATA
1 ATAAATTTAGTATA
16788133 AT
1 AT
16788135 TTAAAGTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
ATAAATTTAGTATA
Done.