Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 78 of 113
Found at i:16788489 original size:19 final size:20
Alignment explanation
Indices: 16788467--16788515 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
16788457 TATTGGTTAA
16788467 AATATATTATATAATT-TA-T
1 AATATATTA-ATAATTATATT
16788486 AATATAATTAATAATTATATT
1 AATAT-ATTAATAATTATATT
16788507 AATA-ATTAA
1 AATATATTAA
16788516 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 16 0.59
20 6 0.22
21 5 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATATTAATAATTATATT
Found at i:16788492 original size:12 final size:12
Alignment explanation
Indices: 16788475--16788512 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
16788465 AAAATATATT
*
16788475 ATATAATTTATA
1 ATATAATTAATA
16788487 ATATAATTAATA
1 ATATAATTAATA
16788499 AT-TATATTAATA
1 ATATA-ATTAATA
16788511 AT
1 AT
16788513 TAAAAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATAATTAATA
Found at i:16788916 original size:26 final size:24
Alignment explanation
Indices: 16788871--16788935 Score: 62
Period size: 26 Copynumber: 2.6 Consensus size: 24
16788861 ATATAACAAT
16788871 TATATAAT-TAATTAACTTATTAAA
1 TATAT-ATCTAATTAACTTATTAAA
*
16788895 CTA-ATATCTAATTAACTATTATTTAA
1 -TATATATCTAATTAAC--TTATTAAA
*
16788921 TATATATTTAATTAA
1 TATATATCTAATTAA
16788936 AGTTTAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
23 2 0.06
24 10 0.29
25 4 0.12
26 18 0.53
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (24 bp):
TATATATCTAATTAACTTATTAAA
Found at i:16788991 original size:16 final size:16
Alignment explanation
Indices: 16788972--16789006 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
16788962 TAAATGTTCA
16788972 AATAATAATATTA-TTT
1 AATAATAAT-TTAGTTT
16788988 AATAATAATTTAGTTT
1 AATAATAATTTAGTTT
16789004 AAT
1 AAT
16789007 TATTATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
AATAATAATTTAGTTT
Found at i:16789774 original size:17 final size:17
Alignment explanation
Indices: 16789752--16789784 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16789742 ATATTTAATT
16789752 AATAATATTA-ATAAATA
1 AATAAT-TTATATAAATA
16789769 AATAATTTATATAAAT
1 AATAATTTATATAAAT
16789785 TATTTGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATTTATATAAATA
Found at i:16790804 original size:23 final size:22
Alignment explanation
Indices: 16790744--16790804 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
16790734 ATTGACTATT
* *
16790744 AATAATAA-AATATTATACTTA
1 AATATTAATAATAATATACTTA
*
16790765 AATATTAATTATCAATATACTTA
1 AATATTAATAAT-AATATACTTA
*
16790788 AGTAATTAATAATAATA
1 AAT-ATTAATAATAATA
16790805 ATAGTCATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 7 0.22
22 2 0.06
23 15 0.47
24 8 0.25
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
AATATTAATAATAATATACTTA
Found at i:16791959 original size:181 final size:178
Alignment explanation
Indices: 16791640--16792297 Score: 579
Period size: 181 Copynumber: 3.7 Consensus size: 178
16791630 ATTATGAGAG
* * * * *
16791640 ATTTAGAAAAT-AATTATATTTACCAAACCAGTTCAAATAATTATAACTATTTGAACAATTATTT
1 ATTTA-AAAATAAATT-TGTTTACCAAACCAGTTCAAATAGTTATGACTATTTGAATAATTATCT
* * * * * * *
16791704 ATTTCAAATCATTATTACTTTTTGTTTTGTCATAAAACAATTGTTTTTGTT-AAGATAAGTTTGT
64 ATTTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTG-TTTTGTTCATGCT-AGTTTAT
* * * * *
16791768 TCAAAATAAAATAATACTAATTTATTAATATTTAGAAAATTAATTAGTAATAG
127 T-TAAATAAAATAATACTAATTTAATAATATTTAGAAAATTAATAAGTAAGAA
* * *
16791821 ATTTAAAAAGTAAATTTGTTTACCAAACCATTTCAAATAGTTTTGATTATTTGAATAATTATCTA
1 ATTTAAAAA-TAAATTTGTTTACCAAACCAGTTCAAATAGTTATGACTATTTGAATAATTATCTA
* * * *
16791886 TTTCAAATTGTTATAACCTTTTATTTTGTCATTAAACAATTGATTATGTTCATGCTATTTTATTT
65 TTTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTG-TTTTGTTCATGCTAGTTTATTT
* * * * **
16791951 AGAATAAAATAATATTAATTTAATAAAATTTTGAAACTTAATAACCAAGAAA
129 A-AATAAAATAATACTAATTTAATAATATTTAGAAAATTAATAAGTAAG-AA
* * ** **** * * * *
16792003 ATTAAAAAATAAATCTAATTGTTGAACTAGTTAAAATAGTTATGACAATATGAATAATTATCTAC
1 ATTTAAAAATAAATTTGTTTACCAAACCAGTTCAAATAGTTATGACTATTTGAATAATTATCTA-
* * * * * * *
16792068 TTT-AAATCGTTATGACCTTTTCTTTTGTCATAAAACAATTGTTTTCTTCGTACAAGCTTATTCT
65 TTTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTGTTTTGTTCATGCTAGTTTATT-T
*
16792132 AATTAAAATAATACTAATTTAATAATATTTTA-AAAATTAATAAGTAAGAA
129 AAATAAAATAATACTAATTTAATAATA-TTTAGAAAATTAATAAGTAAGAA
* * * * ** *
16792182 ATTTAAAAATAAATTTGTTTA-CAAATCAGTTTAAATGGTTAAGACTATTAAAACAATTATCTAT
1 ATTTAAAAATAAATTTGTTTACCAAACCAGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
* * * * * * * *
16792246 TTAAAATCATTTTGACCTTTTGTTTAGTTATAAAACAATTGTTCTAGTTCAT
66 TTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTGTT-TTGTTCAT
16792298 ATAAGCTTAT
Statistics
Matches: 378, Mismatches: 89, Indels: 22
0.77 0.18 0.04
Matches are distributed among these distances:
177 3 0.01
178 65 0.17
179 23 0.06
180 55 0.15
181 213 0.56
182 19 0.05
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (178 bp):
ATTTAAAAATAAATTTGTTTACCAAACCAGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
TTCAAATCGTTATAACCTTTTATTTTGTCATAAAACAATTGTTTTGTTCATGCTAGTTTATTTAA
ATAAAATAATACTAATTTAATAATATTTAGAAAATTAATAAGTAAGAA
Found at i:16792815 original size:178 final size:172
Alignment explanation
Indices: 16792590--16792935 Score: 408
Period size: 178 Copynumber: 2.0 Consensus size: 172
16792580 CGCTATGACC
* * *
16792590 TTTTGTTTTGTCATAAAATATTTATTTTTGATCATACAAGCTTATTCAAA-ATAAAATATTACTA
1 TTTTGTTTTGTCATAAAACAATTATTCTTGATCATACAAGCTTATTCAAATA-AAAATA-TACTA
** *
16792654 ATTTTTTAATAGTTCAAAAATTAATAAGAGATTTTTAAAAAATAAATATGTTTATCGAACCAATT
64 ATTTAATAATAGTTCAAAAATTAATAAGAGA--TTTAAAAAA-AAA-AT-TTTACCGAACCAATT
* ** * *
16792719 CAAATAGTTATGACTGTTTGAACAATTATCAATCTCAAATCATTAAGAT
124 CAAATAATTAAAACTATTAGAACAATTATCAATCTCAAATCATTAAGAT
* * **
16792768 TTTTGTTTTGTCATAAAACAATTATCTCTT-ATCATAGAAGTTTATTCAGTTAAAAATGATACTA
1 TTTTGTTTTGTCATAAAACAATTAT-TCTTGATCATACAAGCTTATTCAAATAAAAAT-ATACTA
* * *
16792832 ATTTAATAATATTTCAAAATTTAATAAGAGATTTAAAAAAAAAATTTTGCCGAACCAATTCAAAT
64 ATTTAATAATAGTTCAAAAATTAATAAGAGATTTAAAAAAAAAATTTTACCGAACCAATTCAAAT
* * *
16792897 AATTAAAACTATTAGAATAATTATCTATTTCAAATCATT
129 AATTAAAACTATTAGAACAATTATCAATCTCAAATCATT
16792936 CCAATGTTAT
Statistics
Matches: 144, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
173 49 0.34
174 2 0.01
175 3 0.02
176 9 0.06
178 76 0.53
179 5 0.03
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (172 bp):
TTTTGTTTTGTCATAAAACAATTATTCTTGATCATACAAGCTTATTCAAATAAAAATATACTAAT
TTAATAATAGTTCAAAAATTAATAAGAGATTTAAAAAAAAAATTTTACCGAACCAATTCAAATAA
TTAAAACTATTAGAACAATTATCAATCTCAAATCATTAAGAT
Found at i:16793155 original size:25 final size:26
Alignment explanation
Indices: 16793121--16793179 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
16793111 TAATTTTCAT
*
16793121 TAAATTATTAATATAGA-ATTAATTAA
1 TAAATAATTAATATAGATATTAA-TAA
*
16793147 T-AATAATTAATATTGATATTAATAA
1 TAAATAATTAATATAGATATTAATAA
16793172 TAAATAAT
1 TAAATAAT
16793180 ATTAATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
TAAATAATTAATATAGATATTAATAA
Found at i:16793170 original size:22 final size:22
Alignment explanation
Indices: 16793142--16793210 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
16793132 TATAGAATTA
* *
16793142 ATTAATAATAATTAATATTGAT
1 ATTAATAATAAATAATATTAAT
16793164 ATTAATAATAAATAATATTAAT
1 ATTAATAATAAATAATATTAAT
* *
16793186 ATTTAGTTAT-AATAAT-TTAAT
1 A-TTAATAATAAATAATATTAAT
16793207 ATTA
1 ATTA
16793211 TTATTATTAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.07
21 6 0.14
22 27 0.64
23 6 0.14
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (22 bp):
ATTAATAATAAATAATATTAAT
Found at i:16793317 original size:22 final size:24
Alignment explanation
Indices: 16793280--16793328 Score: 68
Period size: 22 Copynumber: 2.1 Consensus size: 24
16793270 TAATATTTTG
16793280 TAAATATTTATAAATTA-TTAGCAA
1 TAAATATTTATAAATTACTTA-CAA
16793304 TAAATATTT-T-AATTACTTACAA
1 TAAATATTTATAAATTACTTACAA
16793326 TAA
1 TAA
16793329 CTGTTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.46
23 4 0.17
24 9 0.38
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (24 bp):
TAAATATTTATAAATTACTTACAA
Found at i:16793747 original size:180 final size:181
Alignment explanation
Indices: 16793525--16794417 Score: 640
Period size: 180 Copynumber: 5.0 Consensus size: 181
16793515 TATTAAATCT
** * * * * * *
16793525 CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTTGAACAAACTTATATGAACAA
1 CTTATTAACATTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAGAA
* * ** * *
16793590 AAACATTTATTTTACAACAAAACATAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAG
66 AAACAATTGTTTTATGACAAAACA-AAAGGTCACAATGATTTGAAATAGATAATTATTCAAATAG
* * * * * **
16793655 CCTTAACTATTT-AATTGGTTTGGTAAAC-AATTTATTTTTAAAAT-TTATCA
130 CCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTAAAATCTCCT-A
* * * *
16793705 GTTATTAA-ATTTAATAATATTACTAGATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAGA
1 CTTATTAACATTTAA-AATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAGA
* * * * * *
16793769 TAAATAATTGTTTTATGAC-AAACAAAAGGTTACAATGATTGGAAATATATAATTGTTCAAATAG
65 AAAACAATTGTTTTATGACAAAACAAAAGGTCACAATGATTTGAAATAGATAATTATTCAAATAG
* *
16793833 TCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTTAAATCTCCTA
130 CCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTAAAATCTCCTA
* * * *
16793885 CTTATTAACTTTTCAAATATTAATAAATTAGTATTATTTTATTTTGAATAGGCTTGTATGATGAA
1 CTTATTAACATTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAGAA
* * *
16793950 AAACAATTGTTTTATGACAAAACAAAAGTTCACAATGATTTGAAATAGATAATTTTTTAAAT-GC
66 AAACAATTGTTTTATGACAAAACAAAAGGTCACAATGATTTGAAATAGATAATTATTCAAATAG-
* *
16794014 CCAT-A--A-TT--A-T--TT-G---AACTAATTTATTTTTTAAATCT-CTAA
130 CCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTAAAATCTCCT-A
* * * ** * * * ** *
16794053 TTTGTCAATTTTTATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTTTATGAACTG
1 CTTATTAACATTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAA--G
* * * * ** *
16794118 -AAAACAATTGTTTTATGATAAAATATAAGGTCATAACAATTTTG-AATAGATAATTGTTCAAAT
64 AAAAACAATTGTTTTATGACAAAACAAAAGGTCACAATGA-TTTGAAATAGATAATTATTCAAAT
** * * * * * * * **
16794181 AGTAAAAAATATTTGAACTTATTCGGTAAATAGATTT-TTTGTCTAAT-T--T-
128 AGCCATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTAAAATCTCCTA
* ** ** * * * *
16794230 CTTAATAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTCGAATAAGCATGTATG-AGTT
1 CTTATTAACATTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAG-A
* * * * * * * * *
16794294 GAAGCAATTATTTTATGACTAAACAAAAGGTCAAAATAATTTAAAATAGATAATTGTTCTAATAG
65 AAAACAATTGTTTTATGACAAAACAAAAGGTCACAATGATTTGAAATAGATAATTATTCAAATAG
* * * * *
16794359 TCTTAACTATTTGAACTAATTC-AGTAAACATATTTATTTTTTAAATC-CCTA
130 CCATAACTATTTGAACTGATTCGA-TAAACAAATTTATTTTTAAAATCTCCTA
16794410 CTTATTAA
1 CTTATTAA
16794418 TGTTTAGAAT
Statistics
Matches: 563, Mismatches: 116, Indels: 68
0.75 0.16 0.09
Matches are distributed among these distances:
167 2 0.00
168 71 0.13
169 50 0.09
170 7 0.01
171 1 0.00
172 3 0.01
173 2 0.00
174 2 0.00
175 5 0.01
176 78 0.14
177 57 0.10
178 47 0.08
179 24 0.04
180 155 0.28
181 53 0.09
182 6 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (181 bp):
CTTATTAACATTTAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAGAA
AAACAATTGTTTTATGACAAAACAAAAGGTCACAATGATTTGAAATAGATAATTATTCAAATAGC
CATAACTATTTGAACTGATTCGATAAACAAATTTATTTTTAAAATCTCCTA
Found at i:16794320 original size:345 final size:345
Alignment explanation
Indices: 16793718--16794348 Score: 778
Period size: 345 Copynumber: 1.8 Consensus size: 345
16793708 ATTAAATTTA
* * * * * *
16793718 ATAATATTACTAGATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAGATAAATAATTGTTTT
1 ATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTGTATGAAGATAAACAATTGTTTT
* * * *
16793783 ATGACAAACAAAAGGTTACAATGATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAA
66 ATGACAAACAAAAGGTTACAAT-ATTGGAAATAGATAATTGTTCAAATAGTAAAAAATATTTGAA
* *
16793848 CTGATTCGATAAACAAATTTATTTTTTAAATCTCCTACTTATTAACTTTTCAAATATTAATAAAT
130 CTGATTCGATAAACAAATTTATTTTCTAAATCT-CTACTTAATAACTTTTCAAATATTAATAAAT
* * * *
16793913 TAGTATTATTTTATTTTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAG
194 TAGTATTATTTTATTTCGAATAAGCATGTATGATG-AAAACAATTATTTTATGACAAAACAAAAG
* * * *
16793978 TTCACAATGATTTGAAATAGATAATTTTTTAAATGCCCATAATTATTTGAACTAATTTATTTTTT
258 GTCAAAATAATTTAAAATAGATAATTTTTTAAATGCCCATAATTATTTGAACTAATTTATTTTTT
16794043 AAATCTCTAATTTGTCAATTTTT
323 AAATCTCTAATTTGTCAATTTTT
*
16794066 ATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTTTATGAACTGA-AAACAATTGTT
1 ATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTGTATGAA--GATAAACAATTGTT
* *
16794130 TTATGATAAA-ATATAAGGTCATAACAAT-TTTG-AATAGATAATTGTTCAAATAGTAAAAAATA
64 TTATGACAAACA-A-AAGGT--T-ACAATATTGGAAATAGATAATTGTTCAAATAGTAAAAAATA
* * * * * ** *
16794192 TTTGAACTTATTCGGTAAATAGATTT-TTTGTCT-AAT-T-T-CTTAATAATTTTTTGAATGTTA
124 TTTGAACTGATTCGATAAACAAATTTATTT-TCTAAATCTCTACTTAATAACTTTTCAAATATTA
* *
16794252 ATAAATTAGTATTATTTTATTTCGAATAAGCATGTATGAGTTG-AAGCAATTATTTTATGACTAA
188 ATAAATTAGTATTATTTTATTTCGAATAAGCATGTATGA--TGAAAACAATTATTTTATGACAAA
16794316 ACAAAAGGTCAAAATAATTTAAAATAGATAATT
251 ACAAAAGGTCAAAATAATTTAAAATAGATAATT
16794349 GTTCTAATAG
Statistics
Matches: 240, Mismatches: 33, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
345 100 0.42
346 1 0.00
347 2 0.01
348 45 0.19
349 26 0.11
350 57 0.24
351 3 0.01
352 1 0.00
353 5 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (345 bp):
ATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTGTATGAAGATAAACAATTGTTTT
ATGACAAACAAAAGGTTACAATATTGGAAATAGATAATTGTTCAAATAGTAAAAAATATTTGAAC
TGATTCGATAAACAAATTTATTTTCTAAATCTCTACTTAATAACTTTTCAAATATTAATAAATTA
GTATTATTTTATTTCGAATAAGCATGTATGATGAAAACAATTATTTTATGACAAAACAAAAGGTC
AAAATAATTTAAAATAGATAATTTTTTAAATGCCCATAATTATTTGAACTAATTTATTTTTTAAA
TCTCTAATTTGTCAATTTTT
Found at i:16794372 original size:176 final size:173
Alignment explanation
Indices: 16794059--16794386 Score: 367
Period size: 176 Copynumber: 1.9 Consensus size: 173
16794049 CTAATTTGTC
* * * * *
16794059 AATTTTTATAATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTTTATGAACTGAAAACA
1 AATTTTT-TAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATG-AGTGAAAACA
* * *
16794124 ATTGTTTTATGA-TAAA-ATATAAGGTCATAACAATTTTG-AATAGATAATTGTTCAAATAGTAA
64 ATTGTTTTATGACTAAACA-A-AAGGTCACAATAA-TTTGAAATAGATAATTGTTCAAATAGTCA
* * *
16794186 AAAATATTTGAACTTATTCGGTAAATAGATTTTTTGTCTAATTTCTTAAT
126 TAACTATTTGAACTAATTCGGTAAATA-ATTTTTT-TCTAATTTCTTAAT
* * *
16794236 AATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTCGAATAAGCATGTATGAGTTG-AAGCA
1 AATTTTTT-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAG-TGAAAACA
* * * * *
16794300 ATTATTTTATGACTAAACAAAAGGTCAAAATAATTTAAAATAGATAATTGTTCTAATAGTCTTAA
64 ATTGTTTTATGACTAAACAAAAGGTCACAATAATTTGAAATAGATAATTGTTCAAATAGTCATAA
*
16794365 CTATTTGAACTAATTCAGTAAA
129 CTATTTGAACTAATTCGGTAAA
16794387 CATATTTATT
Statistics
Matches: 127, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
175 3 0.02
176 70 0.55
177 53 0.42
178 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (173 bp):
AATTTTTTAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAGTGAAAACAAT
TGTTTTATGACTAAACAAAAGGTCACAATAATTTGAAATAGATAATTGTTCAAATAGTCATAACT
ATTTGAACTAATTCGGTAAATAATTTTTTTCTAATTTCTTAAT
Found at i:16795015 original size:183 final size:182
Alignment explanation
Indices: 16794696--16795286 Score: 632
Period size: 183 Copynumber: 3.3 Consensus size: 182
16794686 TTTTAAAAAT
* * * * *
16794696 TTTTACTTATTAATTTTTGGAACATTAATAAATTTACACTATTTTATTTAAAATAAGCTTGAA-T
1 TTTTACTTATTAATTTTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGC-T-AATT
* * * * * *
16794760 GAATAGAACCAATTGTTTTACTACAAAACAAAAGGTTGTAATGTTTTGAAATAGATAATTA-TTA
64 GAATAGAAACAATTGTTTTATTACAAAACAAAAAGTTATAATGATTTGAAATAAATAATTATTTA
*
16794824 AGATAGTCATAACTATTTGAACTTGTTCAATAAACAGATTTATTTTTTTTAATTC
129 A-ATAGTCATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTTTTAATTC
* *
16794879 TCTTACTTTTTAATTTTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTAACTTG
1 TTTTACTTATTAATTTTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTAA-TTG
* * * * *
16794944 AATTGAAACAATTGTTTTATTACAAAACAAAATGTTACAATGATTTGAAGTATATAATTATTTAA
65 AATAGAAACAATTGTTTTATTACAAAACAAAAAGTTATAATGATTTGAAATAAATAATTATTTAA
* * * * **
16795009 ATAGTCATGACTATTTAAACTTGTTTGGTAAAC----TTATTTTTTAAAATT-
130 ATAGTCATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTTTTAATTC
* ** * * * *
16795057 TTTTACTTATTAATTGTTAAAATATTAATAAATCAATATTATTTTAATCCAAATAAGCTCATAT-
1 TTTTACTTATTAATTTTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTAAT-TG
* * *
16795121 AGATGGAAACAATTGTTTTATGACAAAACAAGAAAGTCATAA-GAATTTGAAATAAATAATTATT
65 A-ATAGAAACAATTGTTTTATTACAAAACAA-AAAGTTATAATG-ATTTGAAATAAATAATTATT
* * * *
16795185 TAGATAGTCATAACTATTTGAATTTGTTCGATAAATAGATTTA--TTTTTTAAATC
127 TAAATAGTCATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTTTTAATTC
**
16795239 TTTTACTTATTAATTGTCTT--AATATTAATAAATTTGTATTATTTTATT
1 TTTTACTTATTAATT-T-TTGGAATATTAATAAATTAATATTATTTTATT
16795287 CGAAGTAAGC
Statistics
Matches: 340, Mismatches: 54, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
177 2 0.01
178 81 0.24
179 67 0.20
181 9 0.03
182 40 0.12
183 135 0.40
184 6 0.02
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (182 bp):
TTTTACTTATTAATTTTTGGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTAATTGA
ATAGAAACAATTGTTTTATTACAAAACAAAAAGTTATAATGATTTGAAATAAATAATTATTTAAA
TAGTCATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTTTTAATTC
Found at i:16795478 original size:17 final size:18
Alignment explanation
Indices: 16795458--16795492 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
16795448 AAATTATTTG
16795458 AATATTATAGT-TATTAT
1 AATATTATAGTATATTAT
*
16795475 AATATTGTAGTATATTAT
1 AATATTATAGTATATTAT
16795493 TTTAACTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (18 bp):
AATATTATAGTATATTAT
Found at i:16795725 original size:21 final size:21
Alignment explanation
Indices: 16795695--16795786 Score: 64
Period size: 21 Copynumber: 4.4 Consensus size: 21
16795685 TTTAAATAAA
*
16795695 TATTTGTATTTAATTAATTAT
1 TATTTATATTTAATTAATTAT
* *
16795716 TATTTATATTATTATAAATT-T
1 TATTTATATT-TAATTAATTAT
* *
16795737 T-TTAATATTTTAATTAATTAA
1 TATTTATA-TTTAATTAATTAT
* * *
16795758 TATATAT-TATTAATTAAATAG
1 TATTTATAT-TTAATTAATTAT
16795779 TATTTATA
1 TATTTATA
16795787 ATTACTAATA
Statistics
Matches: 53, Mismatches: 12, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
20 13 0.25
21 30 0.57
22 10 0.19
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TATTTATATTTAATTAATTAT
Found at i:16795771 original size:17 final size:17
Alignment explanation
Indices: 16795749--16795804 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
16795739 TAATATTTTA
16795749 ATTAATTAATATATATT
1 ATTAATTAATATATATT
16795766 ATTAATTAA-ATAGTATT
1 ATTAATTAATATA-TATT
*
16795783 -TATAATTACTA-ATATT
1 AT-TAATTAATATATATT
16795799 ATTAAT
1 ATTAAT
16795805 ATATATTATC
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
16 12 0.35
17 21 0.62
18 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
ATTAATTAATATATATT
Found at i:16796254 original size:18 final size:19
Alignment explanation
Indices: 16796231--16796268 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
16796221 TTTGAAATCG
*
16796231 ATAATTGTTT-AAATAGTT
1 ATAATTATTTGAAATAGTT
*
16796249 ATAATTATTTGAACTAGTT
1 ATAATTATTTGAAATAGTT
16796268 A
1 A
16796269 GGCAAATGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (19 bp):
ATAATTATTTGAAATAGTT
Found at i:16796361 original size:12 final size:12
Alignment explanation
Indices: 16796338--16796376 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
16796328 AAATATTATA
16796338 TAAT-TAATAAT
1 TAATCTAATAAT
* *
16796349 TAATTTTATAAT
1 TAATCTAATAAT
16796361 TAATCTAATAAT
1 TAATCTAATAAT
16796373 TAAT
1 TAAT
16796377 ACTCTAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATCTAATAAT
Found at i:16796433 original size:21 final size:20
Alignment explanation
Indices: 16796383--16796448 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 20
16796373 TAATACTCTA
* *
16796383 AATAAATTATTAATAGGTATG
1 AATAAATTATTAATA-TTATT
16796404 AATAAATTATTAATATTATT
1 AATAAATTATTAATATTATT
16796424 AATAATATTATATTAATATTATT
1 AATAA-A-T-TATTAATATTATT
16796447 AA
1 AA
16796449 CATATTTAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.20
21 16 0.40
22 1 0.03
23 15 0.38
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
AATAAATTATTAATATTATT
Found at i:16797541 original size:120 final size:120
Alignment explanation
Indices: 16797328--16797565 Score: 329
Period size: 120 Copynumber: 2.0 Consensus size: 120
16797318 TTAAAACATG
* * * * *
16797328 AATCTATTTACTGAACAAGTTTAAATAGTTATGGCTCTTTGAACAATTATCTATTTCAAATTGCT
1 AATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGAT
16797393 AATACCTTATGTTTTGTCATAAAACAATT-TTTTCTATTCATACAAA-CTTATTTCA
66 AATACCTTATGTTTTGTCATAAAACAATTATTTT-TATTCATA-AAAGCTTATTTCA
* * *
16797448 AATCTATTTACCGAATAAGTTCAAATAGTTGTGACTATTTGAACAATTATTTATTTCAAATT-AT
1 AATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGAT
* * *
16797512 TATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATTT
66 AAT-ACCTTATGTTTTGTCATAAAACAATTATTTTTATTCATAAAAGCTTATTT
16797566 GGATTAAAAT
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
119 6 0.06
120 94 0.90
121 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (120 bp):
AATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGAT
AATACCTTATGTTTTGTCATAAAACAATTATTTTTATTCATAAAAGCTTATTTCA
Found at i:16797715 original size:301 final size:301
Alignment explanation
Indices: 16797164--16797717 Score: 675
Period size: 301 Copynumber: 1.8 Consensus size: 301
16797154 TGGCCTGATC
*
16797164 AGTTCAAATAGTTATGACTGCTTGAACAAATATCTATTCCAAATCATTATGACCTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTACTTGAACAAATATCTATTCCAAATCATTATGACCTTTTGTTTTGT
* * *
16797229 CACAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAACATAATTCTAATTTATTAATAT
66 CACAAAACAATTATTTCTATTCATAAAAGCTTATTCGAAATAAAATAATTCTAATTTATTAATAT
* * * * * * * * * *
16797294 TCCAAAAATTTACAAGTAAGAGGTTTAAAACATGAATCTATTTACTGAACAAGTTTAAATAGTTA
131 TCCAAAAATTAACAAGTAAAAGATTTAAAAAATAAATATATTTACTAAACAAATTCAAATAGTAA
** * * *
16797359 TGGCTCTTTGAACAATTATCTATTTCAAATTGCTAATACCTTATGTTTTGTCATAAAACAATTTT
196 TAACTATTTAAACAATTATCTATTTCAAATTGCTAATACCTTATGTTTCGTCATAAAACAATTTT
16797424 TTCTATTCATACAAACTTATTTCAAATCTATTTACCGAATA
261 TTCTATTCATACAAACTTATTTCAAATCTATTTACCGAATA
* * * * * *
16797465 AGTTCAAATAGTTGTGACTATTTGAACAATTATTTATTTCAAATTATTATGACCTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTACTTGAACAAATATCTATTCCAAATCATTATGACCTTTTGTTTTGT
* * * * * *
16797530 CATAAAACAATTATTTTTGTTCATAAAAGCTTATTTGGATTAAAATAATAT-TAATTTATTAATA
66 CACAAAACAATTATTTCTATTCATAAAAGCTTATTCGAAATAAAATAAT-TCTAATTTATTAATA
* * * * *
16797594 TT-TAGATAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTA-TCAAATAAATTCAAATAG
130 TTCCA-AAAATTAACAAGTAAAAGATTTAAAAAATAAATATATTTACT-AAACAAATTCAAATAG
* ** * *
16797657 TAATAACTATTTAAATAATTATCTATTTCAAATTG-TTTTGATCTTTTGTTTCGTCATAAAA
193 TAATAACTATTTAAACAATTATCTATTTCAAATTGCTAAT-ACCTTATGTTTCGTCATAAAA
16797718 TTTTGTATCA
Statistics
Matches: 208, Mismatches: 41, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
300 4 0.02
301 203 0.98
302 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.42
Consensus pattern (301 bp):
AGTTCAAATAGTTATGACTACTTGAACAAATATCTATTCCAAATCATTATGACCTTTTGTTTTGT
CACAAAACAATTATTTCTATTCATAAAAGCTTATTCGAAATAAAATAATTCTAATTTATTAATAT
TCCAAAAATTAACAAGTAAAAGATTTAAAAAATAAATATATTTACTAAACAAATTCAAATAGTAA
TAACTATTTAAACAATTATCTATTTCAAATTGCTAATACCTTATGTTTCGTCATAAAACAATTTT
TTCTATTCATACAAACTTATTTCAAATCTATTTACCGAATA
Found at i:16797848 original size:180 final size:178
Alignment explanation
Indices: 16797464--16797990 Score: 482
Period size: 180 Copynumber: 2.9 Consensus size: 178
16797454 TTTACCGAAT
* * * *
16797464 AAGTTCAAATAGTTGTGACTATTTGAACAATTATTTATTTCAAATTATTATGACCTTTTGTTTTG
1 AAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCAAATTATTATGACCTTTTGTTTCG
* * * * * *
16797529 TCATAAAACAATTATTTTTGTTCATAAAAGCTTATTTGGATTAAAATAATATTAATTTATTAATA
66 TCAT--AACAA-TATTTTTGTTCATAAAAGCTTATTTGAAATAAAACAATACTAACTTATCAATA
* * * *
16797594 TTTAGATAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCAAAT
128 TTCAAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCAAAC
* * * * * * * *
16797645 AAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGTTTTGATCTTTTGTTTCG
1 AAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCAAATTATTATGACCTTTTGTTTCG
16797710 TCAT-A-AA-A-TTTTGTATCAATATATATAGGCTTATTTGAAATAAAACAATACTAACTTATCA
66 TCATAACAATATTTTTGT-TC-ATA-A-A-A-GCTTATTTGAAATAAAACAATACTAACTTATCA
* * * *
16797771 ATATTCAAAAAATTAATGAGTAAGAGATTTAAAAAATGAATCTGTTTA-CGAAAC
125 ATATTCAAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATC-AAAC
* * * *
16797825 AAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCAAATCATTAAGACCTTTTATTTTG
1 AAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCAAATTATTATGACCTTTTGTTTCG
* * * *
16797890 TCATAA-AATAATTGTTTACATTCATACAAGCTTATTTTG-AATAAAATAATA-TAAATT-TACT
66 TCATAACAAT-ATT-TTT--GTTCATAAAAGCTTA-TTTGAAATAAAACAATACTAACTTAT-C-
* ** *
16797951 AATATTCTAAGGATTAAT-AGTAAAA-ATTTTAAAAATAAAT
124 AATATTCAAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT
16797991 CTATATTAGT
Statistics
Matches: 282, Mismatches: 47, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
174 6 0.02
175 3 0.01
176 3 0.01
177 3 0.01
178 2 0.01
179 16 0.06
180 140 0.50
181 92 0.33
182 5 0.02
183 2 0.01
184 1 0.00
185 6 0.02
186 2 0.01
187 1 0.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (178 bp):
AAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCAAATTATTATGACCTTTTGTTTCG
TCATAACAATATTTTTGTTCATAAAAGCTTATTTGAAATAAAACAATACTAACTTATCAATATTC
AAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCAAAC
Found at i:16798887 original size:16 final size:16
Alignment explanation
Indices: 16798866--16798896 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
16798856 AATTAATAAA
16798866 AATCAAATAGATTAAT
1 AATCAAATAGATTAAT
16798882 AATCAAATAGATTAA
1 AATCAAATAGATTAA
16798897 ATCTTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.29
Consensus pattern (16 bp):
AATCAAATAGATTAAT
Found at i:16799231 original size:24 final size:22
Alignment explanation
Indices: 16799192--16799237 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
16799182 TTCAAATAAA
16799192 TTTATACAAACAAAAATAATTAT
1 TTTATACAAACAAAAAT-ATTAT
16799215 TTTATAACAAA-ACAAAATATTAT
1 TTTAT-ACAAACA-AAAATATTAT
16799238 AACAATTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTATACAAACAAAAATATTAT
Found at i:16799506 original size:17 final size:17
Alignment explanation
Indices: 16799480--16799527 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
16799470 ATGAAAGGTA
*
16799480 ATAATGATTTGAAATAG-
1 ATAATTATTT-AAATAGC
*
16799497 ATAATTATTTAAATGGCC
1 ATAATTATTTAAATAG-C
16799515 ATAATTATTTAAA
1 ATAATTATTTAAA
16799528 CTAAGTCAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 5 0.19
17 9 0.33
18 13 0.48
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (17 bp):
ATAATTATTTAAATAGC
Found at i:16800183 original size:180 final size:177
Alignment explanation
Indices: 16799419--16800952 Score: 1017
Period size: 176 Copynumber: 8.6 Consensus size: 177
16799409 AGTACTAACA
* * ** * *
16799419 ATTTTATTTCAAATAAGCTTGTATG--TTGAAAAACAATTGTTTTATGACAAAATGAAAGGTAAT
1 ATTTTATTTCAAATAA-TTTGTATGAACTG--AAACAATTGTTTTATGACAAAACAAAAGATCAT
* * * * * ** * **
16799482 AATGATTTGAAATAGATAATTATTTAAATGGCCATAATTATTTAAACTAAGTCAG-TAAATTGAT
63 AATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT--GTTTGAAAAACAGAT
** *
16799546 TTATTTTTTAAA--TCTC---TTAATTTTCAAAATATTAAAAAAAGTAGTATT
126 TTATTTTTTAAATCTCTCTTATTAATTTTTGAAATATT-AATAAAGTAGTATT
*** * * * *
16799594 ATTTTATTTTGGATAAACTTT-TGTGAACTAAAACAATTGTTTTATGATAAAACAAAA-ATTCAC
1 ATTTTATTTCAAAT-AA-TTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGA-TCAT
** * * * ** *
16799657 AACAATTTTAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATT
63 AATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC-TGTTTGAAAAACAGATT
* * *
16799722 TATTTTTTCAAATATCCTACTTATTAATTTTTCAAA-AGTTAATAAATTAGTATT
127 TATTTTTT-AAATCT-CT-CTTATTAATTTTTGAAATA-TTAATAAAGTAGTATT
* ** * * * ** * * *
16799776 ATTTTCTTTTGAATAAGCTTGTATGAACTGAAACAATTATTTTGTGATTAAACAAAAGGTTAAAA
1 ATTTTATTTCAAATAA-TTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
* * * * ** ** * * *
16799841 CGATTTGAAATAGATAATTTTTCTAATAATTTTAACTATTTGAACT-AATCAGCAAACATATTTA
65 TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGTTTGA-AAAACAGATTTA
** * *
16799905 TTTTTTAAA--TCTCTTATTAATTTTCAAAATATTATTAAATTAGTATT
129 TTTTTTAAATCTCTCTTATTAATTTTTGAAATATTAATAAAGTAGTATT
* ** *
16799952 ATTTT-TATCTAAATTAGCTTATATGTTAA---AAACAATTGTTTTATGACAAAAC-AAAGATCA
1 ATTTTATTTC-AAA-TAATTTGTATG--AACTGAAACAATTGTTTTATGACAAAACAAAAGATCA
* * *
16800012 TAATGATTTGAGACTA-ATATTTATTCAAATAGTCATAACTATTAGAACTGCTTTGAAAAACA-A
62 TAATGATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTGAACTG-TTTGAAAAACAGA
* * *
16800075 CTTTAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTGTT
125 -TTTATTTTTTAAATCTC-T-CTTATTAATTTTTGAAATATTAATAAAGTAGTATT
* * * * ** *
16800131 ATTTTATTTCATATAAGTTTTTATTAACTGAAACAATTATTTTATGACAAAACAAAATTTCAAAA
1 ATTTTATTTCAAATAA-TTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
* * * * * * *
16800196 TAATTTTAAATAGATAATTGCTT-AAATAGTCATATCTATTTTAAATTGTTT-AGTAAACAGATT
65 TGATTTGAAATAGATAATT-ATTCAAATAGTCATAACTA-TTTGAACTGTTTGA-AAAACAGATT
* *
16800259 TATTTTTTTAAATCTCT-TGCT-TTAATTTTTTG-AATGTTAATAAATTAGTATT
127 TA-TTTTTTAAATCTCTCT--TATTAA-TTTTTGAAATATTAATAAAGTAGTATT
* * * * * *
16800311 ATTTTATTCCAAATAAGCTTGTATGAACTGAAATAATTATTTTATGACTAAACAAAAGGAT-AGA
1 ATTTTATTTCAAATAA-TTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAA-GATCATA
*** * * *** *
16800375 ATGATTTGAAATAGATAATTATTTTGATAGTCTTAACTATTTGAACTAGTTCGGCTAACATATTT
64 ATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-GTTTGAAAAACAGATTT
* * *
16800440 ATTTTTTAAA--TCTCTTATTAATTTTTGAAGTATT-ATTAAGTTAGTATC
128 ATTTTTTAAATCTCTCTTATTAATTTTTGAAATATTAATAAAG-TAGTATT
** * * *
16800488 ATTTTAATTT-AAATAATCTTGTATGAAAGGAAACAATTGTTGTATGACAAAA-TAAAGATCATT
1 ATTTT-ATTTCAAATAAT-TTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATA
* * * *
16800551 ATGATTTGAGAA-AGATAATTGTTCAAATAGTCATAACTATTTCAACTGGTTT-AGTAAATAGAT
64 ATGATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTGAACT-GTTTGA-AAAACAGAT
* ** **
16800614 TTATTTTTTAAA--TCTCTTATTAGTTTTCAAAATATTAATAAA-TCAAAATT
126 TTATTTTTTAAATCTCTCTTATTAATTTTTGAAATATTAATAAAGT-AGTATT
** * *
16800664 ATTTTATTTTGAATAATTTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGTTCATAA
1 ATTTTATTTCAAATAA-TTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
* * * * * * *
16800729 -CAGTTTGAAATAGATAATTGTTCTAATGGACATGAA-TATTTGAACTTATTTGATAAACAGATT
65 TGA-TTTGAAATAGATAATTATTCAAATAGTCAT-AACTATTTGAAC-TGTTTGAAAAACAGATT
* * ***
16800792 TATTGTTTAAATCTCCTACCTATTAATTTGCAAAATATTAATAAAGTAGTATT
127 TATTTTTTAAATCT-CT-CTTATTAATTTTTGAAATATTAATAAAGTAGTATT
* *
16800845 ATTTTATTTTAAATAAACTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGATCATA
1 ATTTTATTTCAAAT-AATTTGTATGAACT-GAAACAATTGTTTTATGACAAAACAAAAGATCATA
* * * * *
16800909 ACT-ATTAGAAATAAAAAATTATTCAAACAGTTATAACTATTTGA
64 A-TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
16800953 GCTTAATAAT
Statistics
Matches: 1069, Mismatches: 211, Indels: 152
0.75 0.15 0.11
Matches are distributed among these distances:
174 45 0.04
175 144 0.13
176 194 0.18
177 136 0.13
178 15 0.01
179 62 0.06
180 150 0.14
181 188 0.18
182 122 0.11
183 13 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (177 bp):
ATTTTATTTCAAATAATTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGTTTGAAAAACAGATTTATT
TTTTAAATCTCTCTTATTAATTTTTGAAATATTAATAAAGTAGTATT
Found at i:16800590 original size:176 final size:173
Alignment explanation
Indices: 16799419--16803700 Score: 1703
Period size: 181 Copynumber: 24.0 Consensus size: 173
16799409 AGTACTAACA
* * *
16799419 ATTTT-ATTTCAAATAAGCTTGTATGTTGAA-AAACAATTGTTTTATGACAAAATGAAAGGTAAT
1 ATTTTAATTT-AAATAAGCTTGTATG--AAAGAAACAATTGTTTTATGACAAAA--AAAGATCAT
* * * * *
16799482 AATGATTTGAAATAGATAATTATTTAAATGGCCATAATTATTTAAACTAAG-TCAGTAA-ATTGA
61 AATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-AGTTCAGTAACA-T-A
* ** *
16799545 TTTATTTTTTAAATCTC---TTAATTTTCAAAATATTAAAAAAAGTAGTATT
123 TTTATTTTTTAAATCTCTTATTAATTTTTAAAATATT-ATTAAATTAGTATT
* ** * * * * * *
16799594 ATTTTATTTTGGATAAACTTTTGTGAACTA-AAACAATTGTTTTATGATAAAACAAAAATTCACA
1 ATTTTAATTTAAATAAGCTTGTATGAA--AGAAACAATTGTTTTATGACAAAA-AAAGA-TCATA
** * * * * *
16799658 ACAATTTTAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
62 ATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGT-AACATATTT
* *
16799723 ATTTTTTCAAATATCCTACTTATTAATTTTTCAAAA-GTTAATAAATTAGTATT
126 ATTTTTT--AA-AT-CT-CTTATTAATTTTT-AAAATATTATTAAATTAGTATT
** * * * * * * * *
16799776 ATTTTCTTTTGAATAAGCTTGTATGAACTGAAACAATTATTTTGTGATTAAACAAAAGGTTAAAA
1 ATTTTAATTTAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGA-CAAA-AAAAGATCATAA
* * * * ** * *
16799841 CGATTTGAAATAGATAATTTTTCTAATAATTTTAACTATTTGAACTA-ATCAGCAAACATATTTA
63 TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAG-TAACATATTTA
*
16799905 TTTTTTAAATCTCTTATTAATTTTCAAAATATTATTAAATTAGTATT
127 TTTTTTAAATCTCTTATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * *
16799952 ATTTTTATCTAAATTAGCTTATATGTTAA-AAACAATTGTTTTATGACAAAACAAAGATCATAAT
1 ATTTTAATTTAAATAAGCTTGTATG-AAAGAAACAATTGTTTTATGACAAAA-AAAGATCATAAT
* * * * **
16800016 GATTTGAGACTA-ATATTTATTCAAATAGTCATAACTATTAGAACT-GCTTTGAAAAACA-ACTT
64 GATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTGAACTAG--TTCAGTAACATA-TT
* * * * * *
16800078 TAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTGTT
125 TATTTTTTAAA--TC-T-CTTATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * * * *
16800131 ATTTT-ATTTCATATAAGTTTTTATTAACTGAAACAATTATTTTATGACAAAACAAA-ATTTCAA
1 ATTTTAATTT-AAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAAA-AAAGA--TCAT
* * * * * * * * *
16800194 AATAATTTTAAATAGATAATTGCTT-AAATAGTCATATCTATTTTAAATTGTTTAGTAAACAGAT
61 AATGATTTGAAATAGATAATT-ATTCAAATAGTCATAACTATTTGAACTAGTTCAGT-AACATAT
* ** * *
16800258 TTATTTTTTTAAATCTCTTGCTTTAATTTTTTGAATGTTAATAAATTAGTATT
124 TTA-TTTTTTAAATCTCTT--ATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * *
16800311 ATTTT-ATTCCAAATAAGCTTGTATGAACTGAAATAATTATTTTATGACTAAACAAAAGGAT-AG
1 ATTTTAATT-TAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGAC-AAA-AAAA-GATCAT
*** * *
16800374 AATGATTTGAAATAGATAATTATTTTGATAGTCTTAACTATTTGAACTAGTTCGGCTAACATATT
61 AATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAG-TAACATATT
* * * *
16800439 TATTTTTTAAATCTCTTATTAATTTTTGAAGTATTATTAAGTTAGTATC
125 TATTTTTTAAATCTCTTATTAATTTTTAAAATATTATTAAATTAGTATT
* * *
16800488 ATTTTAATTTAAATAATCTTGTATGAAAGGAAACAATTGTTGTATGACAAAATAAAGATCATTAT
1 ATTTTAATTTAAATAAGCTTGTATGAAA-GAAACAATTGTTTTATGACAAAA-AAAGATCATAAT
* * * *
16800553 GATTTGAGAA-AGATAATTGTTCAAATAGTCATAACTATTTCAACTGGTTTAGTAA-ATAGATTT
64 GATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGTAACAT--ATTT
* * * * **
16800616 ATTTTTTAAATCTCTTATTAGTTTTCAAAATATTAATAAATCAAAATT
126 ATTTTTTAAATCTCTTATTAATTTTTAAAATATTATTAAATTAGTATT
* * ** *
16800664 ATTTTATTTTGAATAATTTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGTTCATAA
1 ATTTTAATTTAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGAC-AAA-AAAAGATCATAA
* * * * * * * *
16800729 -CAGTTTGAAATAGATAATTGTTCTAATGGACATGAA-TATTTGAACTTATTTGA-TAAACAGAT
63 TGA-TTTGAAATAGATAATTATTCAAATAGTCAT-AACTATTTGAAC-TAGTTCAGT-AACATAT
* ** * *
16800791 TTATTGTTTAAATCTCCTACCTATTAATTTGCAAAATATTAATAAAGTAGTATT
124 TTATTTTTTAAATCT-CT---TATTAATTTTTAAAATATTATTAAATTAGTATT
* *
16800845 ATTTTATTTTAAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAA
1 ATTTTAATTTAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGAC-AAA-AAAAGATCATAA
* * * * * * * * * *
16800910 CT-ATTAGAAATAAAAAATTATTCAAACAGTTATAACTATTTGAGCTTAATAATAATTAA-ATAA
63 -TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC-TAGT--TCAGTAACATAT
* * ** ** *
16800973 TCAATTAAT-AAT-GATTATTAA-TATTAAAATTAATTATTAATATTA--ATT
124 TTATTTTTTAAATCTCTTATTAATTTTTAAAA-T-ATTATTAA-ATTAGTATT
* * * *** * * * *
16801021 A-TCTAATAATCAATATTTATTATAT-AATA-AAACAA------TAAGAACAAAATAAACATTAT
1 ATTTTAAT-TTAAATA-AGCTTGTATGAA-AGAAACAATTGTTTTATG-ACAAAA-AAAGATCAT
* * * ** ** ** **
16801077 -AT-ATTT--AAT-GTTTTAATATTGTTTCAAGTAAACAATAAAAAGCT-CCCATA-TAT-A-TA
61 AATGATTTGAAATAG--AT-A-ATT-ATTCAAATAGTC-ATAACTATTTGAAC-TAGT-TCAGTA
* * * * * * *
16801133 AC-TATGTTA-ATATT-AATAT-ATAGTT--TTATTAATAATTA-GATTAATATTA-TTTT
118 ACATAT-TTATTTTTTAAATCTCTTA-TTAATTTTTAA-AA-TATTATTAA-ATTAGTATT
** * * * *
16801186 ATTCGATATTTTAA-A----T-TAT-----TAATAATTGTTTTATGAGAAAACAAAGATCATAAA
1 ATTTTA-ATTTAAATAAGCTTGTATGAAAGAAACAATTGTTTTATGACAAAA-AAAGATCAT-AA
* * * * * * * * **
16801240 CT-ATTTGAGATTGATATTTGTTCAAATAGTCATAACTGTTTGAACTGGTT-TGAAAACAGCTTT
63 -TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAG-TAACATATTT
* * * * * *
16801303 AGTTTCTAAATATCTTGCTTATTAATTTTTGAAATATTAGTAAAATAGTACT
126 A-TTTTTTAA-ATC-T-CTTATTAATTTTTAAAATATTATTAAATTAGTATT
** * * * ***
16801355 ATTTT-ATTTCGTATAAGTTTTTATGAACTA-AAACAATAGTAAAATAGTACTATTAATAAAA-A
1 ATTTTAATTT-AAATAAGCTTGTATGAA--AGAAACAATTGTTTTAT-G-AC-A--AA-AAAAGA
* * * * * * * *
16801417 GTCATAATGACTTCAAATAAAAAATTGTTCAAATAGTCA-AATCTATTTGAAATTGTTTAGTAAA
57 -TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAA-CTATTTGAACTAGTTCAGT-AA
* * * *
16801481 CAAATTTATATTTTTAAATCTCTTACTCATTAATTTTTCAAATGTTAATAAATTAGTATT
119 CATATTTAT-TTTTTAAATCTC-T--T-ATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * * * * *
16801541 ATTTTATTTTAAATAAGCTTATATGAACTGAAATAATTGTTTTATGACTAAACAAAGGTTAGAAT
1 ATTTTAATTTAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGAC-AAAAAAAGATCATAAT
* * * * * *
16801606 GATTTAAAATAGATAACTATTCTAATAGTCTTAACTATTTGAACTGGATCAGTAAACATATTTAT
64 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGT-AACATATTTA-
*
16801671 TTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTATTAAATTAGTATT
127 TTTTTTAAA--TC-T-CTTATTAATTTTTAAAATATTATTAAATTAGTATT
* * *
16801722 ATTTTAATCTGAATAAGCATGTATAGAAAGAAACAATTGTTTTATGACAAAATAAAGATCATAAT
1 ATTTTAATTTAAATAAGCTTGTAT-GAAAGAAACAATTGTTTTATGACAAAA-AAAGATCATAAT
*
16801787 GATTT-AAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-GTTTTC-GTAA-ATAGAT
64 GATTTGAA-ATAGATAATTATTCAAATAGTCATAACTATTTGAACTAG--TTCAGTAACAT--AT
* * * * * *
16801848 TTAGTTTTTAAATCTTTTATTAATTTTCAAAATATTAATAGATCAGTATT
124 TTATTTTTTAAATCTCTTATTAATTTTTAAAATATTATTAAATTAGTATT
**** * * * *
16801898 ATTTT-ATTTTGCCAA--TT-T-TGCATGAATA-GATTGTTTTATGACTAAACAAAAGGTCATAA
1 ATTTTAATTTAAATAAGCTTGTATGAAAGAA-ACAATTGTTTTATGAC-AAA-AAAAGATCATAA
** * * * * * * *
16801957 CAATTTCAAATAGATAATTGTTCAAATGGACATGATTATTTGAACTTGTTCAGTAAACATATTTA
63 TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGT-AACATATTTA
* * *
16802022 TTTTTTAAATCTTCTACCTATTAATTTTCAGAATATTAATAAATTAGTATT
127 TTTTTTAAATC-TCT---TATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * *
16802073 ATTTT-ATTTCGAATAAACTTGTATGAATTGAAACAATTATTTTATGATAAAACAAAAGATCATA
1 ATTTTAATTT-AAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGA-CAAA-AAAAGATCATA
* * * * *
16802137 ACT-ATTTGAAATAAATAATTGTTCAAACAGTCATAACTATTTGAACT--TGCATGGTAAACAGA
62 A-TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCA--GT-AACATA
* * * ** * * *
16802199 TTTATTTTTTAACTCTTTTACTTATCAATATTTGGAATATTAATAAACTAGTACT
123 TTTATTTTTTAAATC---T-CTTATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * * *
16802254 GTTTT-ATTTCAAATACGCTTGTATGAACAAAAACATTTGGTTTATAATGA-AACAAAAGGTCAT
1 ATTTTAATTT-AAATAAGCTTGTATGAA-AGAAACAATT-GTTT-T-ATGACAAAAAAAGATCAT
* * * * ** * *
16802317 AATTATTTGGAAGAGATAATTATTCAAATAGTCATAATTATTTGAAC-ATGTTCAAAAAAAAATT
61 AATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTA-GTTCAGTAACATATT
* * *
16802381 TATTTTTTAAATTTTTACTTATTAATTTTTGAAATATTAATAAATTTA-TATT
125 TATTTTTTAAA--TCT-CTTATTAATTTTTAAAATATTATTAAA-TTAGTATT
* * ** *
16802433 ATTTT-ATTCAAAATAAACTTGTATGAACA-AGAATGATTGTTTTATGACAAAACAAAAAGGTCA
1 ATTTTAATT-TAAATAAGCTTGTATGAA-AGA-AACAATTGTTTTATGAC--AA-AAAAAGATCA
** * * *
16802496 TAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAG-AAAATAGT
60 TAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGTAACATA-T
* ** *
16802560 TTCATTTTTTAAATCTCTTACTCATTATTTTTTGGAATATTAATAAATTAGTATT
124 TT-ATTTTTTAAATCTC-T--T-ATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * * * * * *
16802615 ATTTTATTTTGAATAAGCCTATATGAATTGATACAATTGTTTTAGGACAAAACAAAAGTTCAAAA
1 ATTTTAATTTAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGAC-AAA-AAAAGATCATAA
* * * * * * *
16802680 TGATTTTAAATAGATAATTACTCAAATAGTTATGACTATTTGATCTTGTTC-GATAAATATATTT
63 TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAG-T-AACATATTT
* * * ** *
16802744 ATTTTTAAAATCTTTTATTTATTAATTGTCAAAATATTAAAAAATTAATATT
126 ATTTTTTAAATCTCTTATTAATT--TT-T-AAAATATTATTAAATTAGTATT
*** * *
16802796 ATTTTAATCCGAATAAGCTTGTATGGAGAA-AAACAATTTTTTTTATGATAAAACAAA-ATGCCA
1 ATTTTAATTTAAATAAGCTTGTAT-GA-AAGAAACAA-TTGTTTTATGACAAAA-AAAGAT--CA
** * * * * * ** *
16802859 TAACAATTTGAAATAAATAATTGTTCAAACAGTTATGACTATTTGAACTTA-TTTGGTAAACAAA
60 TAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC-TAGTTCAGT-AACATA
* * * * * *
16802923 TTTATTTTTTAAATCTTTTACTTATTAAATGTCT-AAATATTAATAAATTTGGATA
123 TTTATTTTTTAAATC---T-CTTATT-AATTTTTAAAATATTATTAAATTAGTATT
* *
16802978 ATTTT-ATTTGAAATAAGCTTGTAT-AAGTAGAAAAAATTGTTTTATGACAAAACAAAAGGTCAT
1 ATTTTAATTT-AAATAAGCTTGTATGAA--AGAAACAATTGTTTTATGAC-AAA-AAAAGATCAT
* * * * *
16803041 AATGATTTGAAATAGATAATTGTTCAAATAATCATAACTATTTGAACTTGTTCA-AAAAATAGTT
61 AATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGTAACATA-TT
* * *
16803105 TCATTTTTTAAATCTCTTACTCATTGTTTTAAGAATATTAATAAATTAG-ATTT
125 T-ATTTTTTAAATCTCTTA-TTAAT-TTTTAA-AATATTATTAAATTAGTA-TT
* * *** * * * * *
16803158 ATGTT-ATTTCAAATAAGCTTTTCCAAACAAAAACAATTGCTTTGTGATAAAACAAAAGGTCATA
1 ATTTTAATTT-AAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGA-CAAA-AAAAGATCATA
* * * * * * *
16803222 ACT-ATTTGAAATAGATAATTGTTCAAACAGTCATAACTATTTGCACT-GGTCAGGCCAATAGAT
62 A-TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCA-G-TAACATAT
* * * * * *
16803285 TCATTTTTTAAATCTGTTACTTATGAATTTTCAAAATATTAATACATTAGCATT
124 TTATTTTTTAAATC---T-CTTATTAATTTTTAAAATATTATTAAATTAGTATT
* *** * * * * * *
16803339 ACTTT-ATGCCGAATAATGC-TATATGAACAAAAACAATTATTTTATGAAAAAACAAATGGTCAA
1 ATTTTAAT-TTAAATAA-GCTTGTATGAA-AGAAACAATTGTTTTATGACAAAA-AAA-GATCAT
* * ** * * ** * * *
16803402 AATGATTTGAAATAAAGAATGGTTTAAATAGTTATAACTAACTGAACTGGTTTAGTAAACAGATT
61 AATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGT-AACATATT
* * * * * * *
16803467 TATTTTCTT-AATATCTTCTTAATTTTCAAAATATGAATAGATTAATATT
125 TATTTT-TTAAATCTCTTATTAATTTTTAAAATATTATTAAATTAGTATT
* * * * * * *
16803516 ATTTT-ATTCCAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAAGAAAAAGTCATA
1 ATTTTAATT-TAAATAAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAAA-AAAGA-TCATA
* * * * * * ** * *
16803580 ATGATTTGAAATAGATAATTGTTCAAATAATCATAATTATTTAAACTGGTTTGACAAACAAAATT
62 ATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAG-TTCAGTAACATATTT
* * *
16803645 ATTTTTTAAATCCCATACTTATTAATTTTTAAAATATTAATAAATTTGTTTT
126 ATTTTTTAAAT--C-T-CTTATTAATTTTTAAAATATTATTAAATTAGTATT
16803697 ATTT
1 ATTT
16803701 ATTTTGAAAA
Statistics
Matches: 3147, Mismatches: 671, Indels: 572
0.72 0.15 0.13
Matches are distributed among these distances:
155 4 0.00
159 3 0.00
160 20 0.01
161 13 0.00
162 9 0.00
163 7 0.00
164 13 0.00
165 30 0.01
166 18 0.01
167 14 0.00
168 14 0.00
169 36 0.01
170 34 0.01
171 69 0.02
172 9 0.00
173 6 0.00
174 54 0.02
175 200 0.06
176 252 0.08
177 289 0.09
178 48 0.02
179 156 0.05
180 398 0.13
181 913 0.29
182 326 0.10
183 53 0.02
184 65 0.02
185 28 0.01
186 61 0.02
187 5 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (173 bp):
ATTTTAATTTAAATAAGCTTGTATGAAAGAAACAATTGTTTTATGACAAAAAAAGATCATAATGA
TTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTAGTTCAGTAACATATTTATTTT
TTAAATCTCTTATTAATTTTTAAAATATTATTAAATTAGTATT
Found at i:16800624 original size:537 final size:526
Alignment explanation
Indices: 16799429--16803690 Score: 1748
Period size: 542 Copynumber: 8.0 Consensus size: 526
16799419 ATTTTATTTC
* * * *
16799429 AAATAAGCTTGTATGTTGAAAAACAATTGTTTTATGACAAAATGAAAGGTAATAATGATTTGA-A
1 AAATAAGCTTATATG-TAAAAAACAATTGTTTTATGACAAAAT-AAAGATCATAATGATTTGAGA
* * * * * * *
16799493 ATAGATAATTATTTAAATGGCCATAATTATTTAAACTAAG-TCAGTAAATTGATTTATTTTTTAA
64 A-AGATAATTATTCAAATAGTCATAACTATTTAAACT-GGTTTAGTAAATAGATTTATTTTTTAA
* ** * *
16799557 ATCTC-T-TAATTTTCAAAATATTAAAAAAAGTAGTATTATTTTATTTTGGATAAACTTTTGTGA
127 ATCTCTTATAATTTTCAAAATATT-AATAAAGTAGTATTATTTTA-TTTCAAT-AATTTTTATGA
* * * *
16799620 ACTAAAACAATTGTTTTATGATAAAACAAAAATTCACAACAATTTTAAATAGATAATTATTTAAA
189 ACTGAAACAATTGTTTTATGACAAAACAAAAATTCAAAACAATTTTAAATAGATAATT-GTTAAA
* * * * *
16799685 TAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTTATTTTTTCAAATATCCTACTTATTAAT
253 TAGTCAT-ACTATTTGAACTTGTT-TGTAAACAGATTTATTTTTTTAAATCTCTTAC-TATTAAT
* *
16799750 TTTTCAAAA-GTTAATAAATTAGTATTATTTTCTTTTGAATAAGCTTGTATGAACTGAAACAATT
315 TTTT-AAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTGAAACAATT
* * * *
16799814 ATTTTGTGATTAAACAAAAGGTTAAAACGATTTGAAATAGATAATTTTTCTAATAATTTTAACTA
379 ATTTTATGACTAAACAAAAGGATAAAACGATTTGAAATAGATAATTTTTCTAATAATCTTAACTA
16799879 TTTGAACTAATCAGCAAACATATTTATTTTTTAAATCTCTTATTAATTTTCAAAATATTATTAAA
444 TTTGAACTAATCAGCAAACATATTTATTTTTTAAATCTCTTATTAATTTTCAAAATATTATTAAA
* *
16799944 TTAGTATTATTTTTATCT
509 TTAGTATCATTTTAATCT
* * * *
16799962 AAATTAGCTTATATGTTAAAAACAATTGTTTTATGACAAAACAAAGATCATAATGATTTGAGACT
1 AAATAAGCTTATATGTAAAAAACAATTGTTTTATGACAAAATAAAGATCATAATGATTTGAGA-A
* * * * *
16800027 A-ATATTTATTCAAATAGTCATAACTA-TTAGAACTGCTTT-G-AAAAACAACTTTAGTTTTTAA
65 AGATAATTATTCAAATAGTCATAACTATTTA-AACTGGTTTAGTAAATA-GA-TTTATTTTTTAA
** *
16800088 ATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTGTTATTTTATTTCATATAAGTTTTT
127 A--TC-T-CTT-ATAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTCA-ATAA-TTTTT
* * * *
16800153 ATTAACTGAAACAATTATTTTATGACAAAACAAAATTTCAAAATAATTTTAAATAGATAATTGCT
185 ATGAACTGAAACAATTGTTTTATGACAAAACAAAAATTCAAAACAATTTTAAATAGATAATTG-T
* * *
16800218 TAAATAGTCATATCTATTTTAAATTGTTTAGTAAACAGATTTATTTTTTTAAATCTCTTGCT-TT
249 TAAATAGTCATA-CTATTTGAACTTGTTT-GTAAACAGATTTATTTTTTTAAATCTCTTACTATT
** ** *
16800282 AATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACTGAAATAA
312 AATTTTTAAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTGAAACAA
* * * *
16800347 TTATTTTATGACTAAACAAAAGGATAGAATGATTTGAAATAGATAATTATTT-TGATAGTCTTAA
377 TTATTTTATGACTAAACAAAAGGATAAAACGATTTGAAATAGATAATT-TTTCTAATAATCTTAA
* * * ** *
16800411 CTATTTGAACTAGTTCGGCTAACATATTTATTTTTTAAATCTCTTATTAATTTTTGAAGTATTAT
441 CTATTTGAACTA-ATCAGCAAACATATTTATTTTTTAAATCTCTTATTAATTTTCAAAATATTAT
* *
16800476 TAAGTTAGTATCATTTTAATTT
505 TAAATTAGTATCATTTTAATCT
* * * *
16800498 AAATAATCTTGTATG-AAAGGAAACAATTGTTGTATGACAAAATAAAGATCATTATGATTTGAGA
1 AAATAAGCTTATATGTAAA--AAACAATTGTTTTATGACAAAATAAAGATCATAATGATTTGAGA
* *
16800562 AAGATAATTGTTCAAATAGTCATAACTATTTCAACTGGTTTAGTAAATAGATTTATTTTTTAAAT
64 AAGATAATTATTCAAATAGTCATAACTATTTAAACTGGTTTAGTAAATAGATTTATTTTTTAAAT
* ** *
16800627 CTCTTATTAGTTTTCAAAATATTAATAAA-TCAAAATTATTTTATTTTGAATAATTTTGTATGAA
129 CTCTTA-TAATTTTCAAAATATTAATAAAGT-AGTATTATTTTA-TTTCAATAATTTT-TATGAA
* * * * * *
16800691 CAGAAACAATTGTTTTATGACAAAACAAAAGTTCATAACAGTTTGAAATAGATAATTGTTCTAAT
190 CTGAAACAATTGTTTTATGACAAAACAAAAATTCAAAACAATTTTAAATAGATAATTGTT-AAAT
* * * * * *
16800756 GGACATGAATATTTGAACTTATTTGATAAACAGATTTA-TTGTTTAAATCTCCTACCTATTAATT
254 AGTCAT-ACTATTTGAACTTGTTTG-TAAACAGATTTATTTTTTTAAATCTCTTA-CTATTAATT
** * * * *
16800820 TGCAAAATATTAATAAAGTAGTATTATTTTATTTTAAATAAACTTGTATGAA-TAGAAACAATTG
316 TTTAAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACT-GAAACAATTA
* * * * * * * * * *
16800884 TTTTATGACAAAACAAAA-GATCATAACTATTAGAAATAAAAAATTATTCAAACAGT-TATAACT
380 TTTTATGACTAAACAAAAGGAT-AAAACGATTTGAAATAGATAATTTTTCTAATAATCT-TAACT
* ** * * * * ** ** *
16800947 ATTTGAGCTTAAT-AATAATTAAATAATCAATTAAT-AAT-GATTATTAATATT-AAAATTAATT
443 ATTTGAAC-TAATCAGCAA--ACATATTTATTTTTTAAATCTCTTATTAATTTTCAAAA-T-ATT
* **
16801008 ATTAATATTAATTATC-TAATAATC-
503 ATTAA-ATT-AGTATCATTTTAATCT
* * * * * *
16801032 -AAT-A-TTTATTATATAATAAAACAA------TAAGAACAAAATAAACATTAT-AT-ATTTAAT
1 AAATAAGCTTA-TATGTAA-AAAACAATTGTTTTATG-ACAAAATAAAGATCATAATGATTTGA-
** * * ** **** * * *
16801086 GTTTTA-AT-ATTGTTTC--A-AGT-A-AACAATAAAAAGCTCCCATA-TATATA-A-CTA--TG
62 G--AAAGATAATT-ATTCAAATAGTCATAACTATTTAAA-CTGGTTTAGTAAATAGATTTATTTT
* * * * * * * *
16801139 TTAATAT-TAATATATAGTTTT-ATTAATA--ATTAGATTAATATTATTTTA-TTCGAT-A-TTT
123 TTAA-ATCT-CT-TATAATTTTCA-AAATATTAATAAAGTAGTATTATTTTATTTCAATAATTTT
* * * * * * * * *
16801197 TA--AA-TTATTAATAATTGTTTTATGAGAAAACAAAGA-TCATAAACTATTTGAGATTGATATT
184 TATGAACTGA--AACAATTGTTTTATGACAAAACAAAAATTCA-AAACAATTTTAAATAGATAAT
* * * * * * * *
16801258 TGTTCAAATAGTCATAACTGTTTGAACTGGTTTGAAAACAGCTTTA-GTTTCTAAATATCTTGCT
246 TGTT-AAATAGTCAT-ACTATTTGAACTTGTTTGTAAACAGATTTATTTTTTTAAATCTCTTAC-
* * * * * *** * * *
16801322 TATTAATTTTTGAAATATTAGTAAAATAGTACTATTTTATTTCGTATAAGTTTTTATGAACTAAA
308 TATTAATTTTTAAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTGAA
*** * * * * * * * * * *
16801387 ACAA-TAGTAAAATAGTACTATTAATAAAAAG-TCATAATGACTTCAAATAAAAAATTGTTCAAA
373 ACAATTA-TTTTAT-G-ACTA--AACAAAAGGAT-AAAACGATTTGAAATAGATAATTTTTCTAA
* * * ** * * *
16801450 TAGTC-AAATCTATTTGAAATTGTTTAGTAAACAAATTTATATTTTTAAATCTCTTACTCATTAA
432 TAATCTTAA-CTATTTG-AACTAATCAGCAAACATATTTAT-TTTTTAAATCTC-T--T-ATTAA
* * * * *
16801514 TTTTTC-AAATGTTAATAAATTAGTATTATTTTATTTT
490 -TTTTCAAAATATTATTAAATTAGTATCATTTTAATCT
* * * * * * * *
16801551 AAATAAGCTTATATG-AACTGAAATAATTGTTTTATGACTAAACAAAGGTTAGAATGATTT-AAA
1 AAATAAGCTTATATGTAA--AAAACAATTGTTTTATGACAAAATAAAGATCATAATGATTTGAGA
* * * * * * * *
16801614 ATAGATAACTATTCTAATAGTCTTAACTATTTGAACTGGATCAGTAAACATATTTATTTTTTTAA
64 A-AGATAATTATTCAAATAGTCATAACTATTTAAACTGGTTTAGTAAATAGATTTA-TTTTTTAA
* * * * * * ** *
16801679 ATCTCTTACTTATTAATTTTTAGAATATTATTAAATTAGTATTATTTTAATCTGAATAAGCATGT
127 A--TC-T-CTTA-TAATTTTCAAAATATTAATAAAGTAGTATTATTTT-ATTTCAATAA-TTTTT
* * * * **
16801744 ATAGAA-AGAAACAATTGTTTTATGACAAAATAAAGA-TCATAATGA-TTTAAGATAGATAATTG
185 AT-GAACTGAAACAATTGTTTTATGACAAAACAAAAATTCAAAACAATTTTAA-ATAGATAATTG
* *
16801806 TTCAAATAGTCATAACTATTTGAAC-TGTTTTCGTAAATAGATTTA-GTTTTTAAATCT-TT--T
248 TT-AAATAGTCAT-ACTATTTGAACTTG-TTT-GTAAACAGATTTATTTTTTTAAATCTCTTACT
* * * * *** *
16801866 ATTAATTTTCAAAATATTAATAGATCAGTATTATTTTATTTT-GCCAA--TT-T-TGCA-TGAAT
309 ATTAATTTTTAAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTGAA-
* * * * * * * *
16801925 A-GATTGTTTTATGACTAAACAAAAGG-TCATAACAATTTCAAATAGATAATTGTTCAAATGGA-
373 ACAATTATTTTATGACTAAACAAAAGGAT-AAAACGATTTGAAATAGATAATTTTTCTAAT-AAT
* * * ** *
16801987 CATGATTATTTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTCTACCTATTAATTTTCA
436 CTTAACTATTTGAAC-TAATCAGCAAACATATTTATTTTTTAAATC-TCT---TATTAATTTTCA
* * * *
16802052 GAATATTAATAAATTAGTATTATTTT-ATTT
496 AAATATTATTAAATTAGTATCATTTTAATCT
* * * * * * *
16802082 CGAATAAACTTGTATG-AATTGAAACAATTATTTTATGATAAAACAAAAGATCATAACT-ATTTG
1 -AAATAAGCTTATATGTAA--AAAACAATTGTTTTATGACAAAA-TAAAGATCATAA-TGATTTG
* * * * * ** * *
16802145 A-AATAAATAATTGTTCAAACAGTCATAACTATTTGAACTTGCATGGTAAACAGATTTATTTTTT
61 AGAA-AGATAATTATTCAAATAGTCATAACTATTTAAACTGGTTTAGTAAATAGATTTATTTTTT
* ** * * * **
16802209 AACTCTTTTACTTATCAATATTT-GGAATATTAATAAACTAGTACTGTTTTATTTCAAATACGCT
125 AAATC---T-CTTAT-AAT-TTTCAAAATATTAATAAAGTAGTATTATTTTATTTC-AATA-ATT
* ** * * * ** ** * ** ** *
16802273 TGTATGAACAAAAACATTTGGTTTATAATGAAACAAAAGGTCATAATTATTTGGAAGAGATAATT
182 TTTATGAACTGAAACAATTGTTTTATGACAAAACAAAAATTCAAAACAATTTTAAATAGATAATT
* * * *** * * *
16802338 ATTCAAATAGTCATAATTATTTGAACATGTTCAAAAAAAAATTTA-TTTTTTAAAT-TTTTACTT
247 GTT-AAATAGTCAT-ACTATTTGAACTTGTTTGTAAACAGATTTATTTTTTTAAATCTCTTAC-T
* * ** * *
16802401 ATTAATTTTTGAAATATTAATAAATTTA-TATTATTTTATTCAAAATAAACTTGTATGAAC-AAG
309 ATTAATTTTTAAAATGTTAATAAA-TTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTGA-
** * * * * * * *
16802464 AATGATTGTTTTATGACAAAACAAAAAGG-TCATAACAATTTGAAATAGATAATTGTTCAAATAG
372 AACAATTATTTTATGACTAAAC-AAAAGGAT-AAAACGATTTGAAATAGATAATTTTTCTAATAA
* ** *
16802528 TCATAACTATTTGAACTTGTTCAG-AAA-ATAGTTTCATTTTTTAAATCTCTTACTCATTATTTT
435 TCTTAACTATTTGAAC-TAATCAGCAAACATA-TTT-ATTTTTTAAATCTC-T--T-ATTAATTT
*** * * * *
16802591 TTGGAATATTAATAAATTAGTATTATTTTATTTT
493 TCAAAATATTATTAAATTAGTATCATTTTAATCT
* * * * * * * * *
16802625 GAATAAGCCTATATG-AATTGATACAATTGTTTTAGGACAAAACAAAAGTTCAAAATGATTTTA-
1 AAATAAGCTTATATGTAA--AAAACAATTGTTTTATGACAAAA-TAAAGATCATAATGATTTGAG
* * * * * * * * *
16802688 AATAGATAATTACTCAAATAGTTATGACTATTTGATCTTG-TTCGATAAATATATTTATTTTTAA
63 AA-AGATAATTATTCAAATAGTCATAACTATTTAAACTGGTTTAG-TAAATAGATTTATTTTTTA
* * * * * * * * *
16802752 AATCTTTTATTTATTAATTGTCAAAATATTAAAAAATTAATATTATTTTAATCCGAATAAGCTTG
126 AATC---T-CTTA-TAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTC-AATAA-TTTT
* *** * * * * * *
16802817 TATGGAGAAAAACAATTTTTTTTATGATAAAAC-AAAATGCCATAACAATTTGAAATAAATAATT
184 TATGAACTGAAACAA-TTGTTTTATGACAAAACAAAAAT-TCAAAACAATTTTAAATAGATAATT
* * * * *
16802881 GTTCAAACAGTTATGACTATTTGAACTTATTTGGTAAACAAATTTA-TTTTTTAAATCTTTTACT
247 GTT-AAATAGTCAT-ACTATTTGAACTTGTTT-GTAAACAGATTTATTTTTTTAAATCTCTTAC-
* * * * * * * *
16802945 TATTAAATGTCT-AAATATTAATAAATTTGGATAATTTTATTTGAAATAAGCTTGTAT-AAGTAG
308 TATT-AATTTTTAAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACT-G
* * * * * * *
16803008 AAAAAATTGTTTTATGACAAAACAAAAGG-TCATAATGATTTGAAATAGATAATTGTTCAAATAA
371 AAACAATTATTTTATGACTAAACAAAAGGAT-AAAACGATTTGAAATAGATAATTTTTCTAATAA
* ** * * * *
16803072 TCATAACTATTTGAACTTGTTCA--AAAAATAGTTTCATTTTTTAAATCTCTTACTCATTGTTTT
435 TCTTAACTATTTGAAC-TAATCAGCAAACATA-TTT-ATTTTTTAAATCTCTTA-TTAAT-TTTC
* * * *
16803135 AAGAATATTAATAAATTAG-ATTTATGTT-ATTT
495 AA-AATATTATTAAATTAGTA-TCATTTTAATCT
* **** * * * * *
16803167 CAAATAAGCTTTTCCAAACAAAAACAATTGCTTTGTGATAAAACAAAAGGTCATAACT-ATTTGA
1 -AAATAAGCTTATATGTA-AAAAACAATTGTTTTATGACAAAA-TAAAGATCATAA-TGATTTGA
* * ** * ** *
16803231 -AATAGATAATTGTTCAAACAGTCATAACTATTTGCACTGG-TCAGGCCAATAGATTCATTTTTT
62 GAA-AGATAATTATTCAAATAGTCATAACTATTTAAACTGGTTTA-GTAAATAGATTTATTTTTT
* * * * ** *
16803294 AAATCTGTTACTTATGAATTTTCAAAATATTAATACATTAGCATTACTTTATGCCGAATAATGCT
125 AAATC---T-CTTAT-AATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTC-AATAAT-TT
* ** * * *** ** * * * *
16803359 ATATGAACAAAAACAATTATTTTATGAAAAAACAAATGGTCAAAATGATTTGAAATAAAGAATGG
183 TTATGAACTGAAACAATTGTTTTATGACAAAACAAAAATTCAAAACAATTTTAAATAGATAATTG
* ** * * *
16803424 TTTAAATAGTTATAACTAACTGAACTGGTTTAGTAAACAGATTTATTTTCTT-AATATCTT-C--
248 -TTAAATAGTCAT-ACTATTTGAACTTGTTT-GTAAACAGATTTATTTTTTTAAATCTCTTACTA
* * * * * ** * * * **
16803485 TTAATTTTCAAAATATGAATAGATTAATATTATTTTATTCCAAACAAACTTATATGAACAAAAAC
310 TTAATTTTTAAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTGAAAC
* * * * * * * * * *
16803550 ATTTGTTTTATGACAAAAGAAAAAG-TCATAATGATTTGAAATAGATAATTGTTCAAATAATCAT
375 AATTATTTTATGACTAAACAAAAGGAT-AAAACGATTTGAAATAGATAATTTTTCTAATAATCTT
* * ** ** * * *
16803614 AATTATTTAAACTGGTTTGACAAACAAAATTATTTTTTAAATCCCATACTTATTAATTTTTAAAA
439 AACTATTTGAACTAATCAG-CAAACATATTTATTTTTTAAAT--C-T-CTTATTAATTTTCAAAA
*
16803679 TATTAATAAATT
499 TATTATTAAATT
16803691 TGTTTTATTT
Statistics
Matches: 2908, Mismatches: 610, Indels: 416
0.74 0.16 0.11
Matches are distributed among these distances:
509 3 0.00
510 82 0.03
511 66 0.02
512 5 0.00
513 10 0.00
514 48 0.02
515 13 0.00
517 20 0.01
518 15 0.01
519 21 0.01
520 15 0.01
521 17 0.01
522 15 0.01
523 5 0.00
524 3 0.00
525 7 0.00
526 25 0.01
527 27 0.01
528 6 0.00
529 6 0.00
530 10 0.00
531 83 0.03
532 229 0.08
533 332 0.11
534 137 0.05
535 183 0.06
536 103 0.04
537 228 0.08
538 148 0.05
539 37 0.01
540 24 0.01
541 61 0.02
542 357 0.12
543 284 0.10
544 111 0.04
545 72 0.02
546 50 0.02
547 47 0.02
549 3 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (526 bp):
AAATAAGCTTATATGTAAAAAACAATTGTTTTATGACAAAATAAAGATCATAATGATTTGAGAAA
GATAATTATTCAAATAGTCATAACTATTTAAACTGGTTTAGTAAATAGATTTATTTTTTAAATCT
CTTATAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTCAATAATTTTTATGAACTGAAA
CAATTGTTTTATGACAAAACAAAAATTCAAAACAATTTTAAATAGATAATTGTTAAATAGTCATA
CTATTTGAACTTGTTTGTAAACAGATTTATTTTTTTAAATCTCTTACTATTAATTTTTAAAATGT
TAATAAATTAGTATTATTTTATTTTAAATAAGCTTGTATGAACTGAAACAATTATTTTATGACTA
AACAAAAGGATAAAACGATTTGAAATAGATAATTTTTCTAATAATCTTAACTATTTGAACTAATC
AGCAAACATATTTATTTTTTAAATCTCTTATTAATTTTCAAAATATTATTAAATTAGTATCATTT
TAATCT
Found at i:16800998 original size:19 final size:20
Alignment explanation
Indices: 16800976--16801019 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
16800966 TAAATAATCA
*
16800976 ATTAATAA-TGATTATTAAT
1 ATTAATAATTAATTATTAAT
16800995 ATTAA-AATTAATTATTAAT
1 ATTAATAATTAATTATTAAT
16801014 ATTAAT
1 ATTAAT
16801020 TATCTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTAATAATTAATTATTAAT
Found at i:16801010 original size:13 final size:13
Alignment explanation
Indices: 16800989--16801022 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
16800979 AATAATGATT
16800989 ATTAA-TATTAAA
1 ATTAATTATTAAA
*
16801001 ATTAATTATTAAT
1 ATTAATTATTAAA
16801014 ATTAATTAT
1 ATTAATTAT
16801023 CTAATAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAATTATTAAA
Found at i:16801035 original size:21 final size:21
Alignment explanation
Indices: 16801011--16801050 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16801001 ATTAATTATT
*
16801011 AATATTAATTATCTAATAATC
1 AATATTAATTATATAATAATC
*
16801032 AATATTTATTATATAATAA
1 AATATTAATTATATAATAA
16801051 AACAATAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
AATATTAATTATATAATAATC
Found at i:16801678 original size:181 final size:180
Alignment explanation
Indices: 16801209--16803704 Score: 1910
Period size: 181 Copynumber: 13.9 Consensus size: 180
16801199 AATTATTAAT
* * * * *
16801209 AATTGTTTTATGAGAAAAC-AAAGATCATAAACT-ATTTGAGATTGATATTTGTTCAAATAGTCA
1 AATTGTTTTATGACAAAACAAAAGGTCAT-AA-TGATTTGAAATAGATAATTGTTCAAATAGTCA
* * * ** * * * * *
16801272 TAACTGTTTGAACTGGTT-TGAAAACAGCTTTAGTTTCTAAATATCTTGCTTATTAATTTTTGAA
64 TAACTATTTGAACTGGTTCAGTAAACATATTTATTTTTTAAATCTCTTACTTATTAA-TTTTCAA
* * * ** * *
16801336 ATATTAGTAAAATAGTACTATTTTATTTCGTATAAGTTTTTATGAACTA-AAAC
128 ATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAAC-AGAAAC
* *** * * * * * * *
16801389 AATAGTAAAATAGTACTATTAATAAAAAGTCATAATGACTTCAAATAAAAAATTGTTCAAATAGT
1 AATTGTTTTAT-G-AC-A-AAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
* * * * *
16801454 CA-AATCTATTTGAAATTGTTTAGTAAACAAATTTATATTTTTAAATCTCTTACTCATTAATTTT
62 CATAA-CTATTTGAACTGGTTCAGTAAACATATTTAT-TTTTTAAATCTCTTACTTATTAA-TTT
* * * *
16801518 TCAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTATATGAACTGAAAT
124 TCAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
* * * * * * * *
16801575 AATTGTTTTATGACTAAAC-AAAGGTTAGAATGATTTAAAATAGATAACTATTCTAATAGTCTTA
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* *
16801639 ACTATTTGAACTGGATCAGTAAACATATTTATTTTTTTAAATCTCTTACTTATTAATTTTTAGAA
66 ACTATTTGAACTGGTTCAGTAAACATATTTA-TTTTTTAAATCTCTTACTTATTAATTTTCA-AA
* * *
16801704 TATTATTAAATTAGTATTATTTTA-ATCTGAATAAGCATGTATA-GAA-AGAAAC
129 TATTAATAAATTAGTATTATTTTATTTC-AAATAAGC-T-TATATGAACAGAAAC
* *
16801756 AATTGTTTTATGACAAAA-TAAAGATCATAATGATTT-AAGATAGATAATTGTTCAAATAGTCAT
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA-ATAGATAATTGTTCAAATAGTCAT
* * * *
16801819 AACTATTTGAACTGTTTTC-GTAAATAGATTTAGTTTTTAAA--TCTT--TTATTAATTTTCAAA
65 AACTATTTGAACTG-GTTCAGTAAACATATTTATTTTTTAAATCTCTTACTTATTAATTTTC-AA
* * ****
16801879 ATATTAATAGATCAGTATTATTTTATTT-TGCCAA--TT-T-TG--CATGAATA-
128 ATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACA-GAA-AC
* * ** * * * *
16801926 GATTGTTTTATGACTAAACAAAAGGTCATAACAATTTCAAATAGATAATTGTTCAAATGGACATG
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * *
16801991 ATTATTTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCT-TCTACCTATTAATTTTCAGAA
66 ACTATTTGAACTGGTTCAGTAAACATATTTATTTTTTAAATCTCT-TACTTATTAATTTTCA-AA
* * * **
16802055 TATTAATAAATTAGTATTATTTTATTTCGAATAAACTTGTATGAATTGAAAC
129 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
* * * * *
16802107 AATTATTTTATGATAAAACAAAAGATCATAACT-ATTTGAAATAAATAATTGTTCAAACAGTCAT
1 AATTGTTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * * * * **
16802171 AACTATTTGAACT--TGCATGGTAAACAGATTTATTTTTTAACTCTTTTACTTATCAATATTTGG
65 AACTATTTGAACTGGTTCA--GTAAACATATTTATTTTTTAAATCTCTTACTTATTAAT-TTTCA
* * * * * *
16802234 AATATTAATAAACTAGTACTGTTTTATTTCAAATACGCTTGTATGAACAAAAAC
127 AATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
* * * ** * * * *
16802288 ATTTGGTTTATAATGAAACAAAAGGTCATAATTATTTGGAAGAGATAATTATTCAAATAGTCATA
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * * * * *
16802353 ATTATTTGAACAT-GTTCA-AAAAAAAATTTATTTTTTAAAT-TTTTACTTATTAATTTTTGAAA
66 ACTATTTGAAC-TGGTTCAGTAAACATATTTATTTTTTAAATCTCTTACTTATTAA-TTTTCAAA
* * *
16802415 TATTAATAAATTTA-TATTATTTTA-TTCAAAATAAACTTGTATGAACA-AGAAT
129 TATTAATAAA-TTAGTATTATTTTATTTC-AAATAAGCTTATATGAACAGA-AAC
* **
16802467 GATTGTTTTATGACAAAACAAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCAT
1 AATTGTTTTATGACAAAAC-AAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * * **
16802532 AACTATTTGAACTTGTTCAG-AAA-ATAGTTTCATTTTTTAAATCTCTTACTCATTATTTTTTGG
65 AACTATTTGAACTGGTTCAGTAAACATA-TTT-ATTTTTTAAATCTCTTACTTATTA-ATTTTCA
** * ** *
16802595 AATATTAATAAATTAGTATTATTTTATTTTGAATAAGCCTATATGAATTGATAC
127 AATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
* * * * ** * *
16802649 AATTGTTTTAGGACAAAACAAAAGTTCAAAATGATTTTAAATAGATAATTACTCAAATAGTTATG
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * * * * * *
16802714 ACTATTTGATCTTGTTC-GATAAATATATTTATTTTTAAAATCTTTTATTTATTAATTGTCAAAA
66 ACTATTTGAACTGGTTCAG-TAAACATATTTATTTTTTAAATCTCTTACTTATTAATTTTC-AAA
* * * * * * * * *
16802778 TATTAAAAAATTAATATTATTTTAATCCGAATAAGCTTGTATGGAGAAAAAC
129 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
* * * * ** * * *
16802830 AATTTTTTTTATGATAAAACAAAATGCCATAACAATTTGAAATAAATAATTGTTCAAACAGTTAT
1 AA-TTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* ** ** * * * *
16802895 GACTATTTGAACTTATTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAAATGTCTAAA
65 AACTATTTGAACTGGTTCAGTAAACATATTTATTTTTTAAATCTCTTACTTATTAATTTTC-AAA
* * * * * * *
16802960 TATTAATAAATTTGGATAATTTTATTTGAAATAAGCTTGTAT-AAGTAGAAAA
129 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAA-CAGAAAC
*
16803012 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAATCATA
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * * * *
16803077 ACTATTTGAACTTGTTCA--AAAAATAGTTTCATTTTTTAAATCTCTTACTCATT-GTTTTAAGA
66 ACTATTTGAACTGGTTCAGTAAACATA-TTT-ATTTTTTAAATCTCTTACTTATTAATTTTCA-A
* * *** *
16803139 ATATTAATAAATTAG-ATTTATGTTATTTCAAATAAGCTTTTCCAAACAAAAAC
128 ATATTAATAAATTAGTA-TTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
* * * *
16803192 AATTGCTTTGTGATAAAACAAAAGGTCATAACT-ATTTGAAATAGATAATTGTTCAAACAGTCAT
1 AATTGTTTTATGACAAAACAAAAGGTCATAA-TGATTTGAAATAGATAATTGTTCAAATAGTCAT
* ** * * * * *
16803256 AACTATTTGCACTGG-TCAGGCCAATAGATTCATTTTTTAAATCTGTTACTTATGAATTTTCAAA
65 AACTATTTGAACTGGTTCA-GTAAACATATTTATTTTTTAAATCTCTTACTTATTAATTTTC-AA
* * * ** * *
16803320 ATATTAATACATTAGCATTACTTTATGCCGAATAATGC-TATATGAACAAAAAC
128 ATATTAATAAATTAGTATTATTTTATTTCAAATAA-GCTTATATGAACAGAAAC
* * * * * * * * *
16803373 AATTATTTTATGAAAAAACAAATGGTCAAAATGATTTGAAATAAAGAATGGTTTAAATAGTTATA
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
** * * *
16803438 ACTAACTGAACTGGTTTAGTAAACAGATTTATTTTCTT-AATATCTT-C---TTAATTTTCAAAA
66 ACTATTTGAACTGGTTCAGTAAACATATTTATTTT-TTAAATCTCTTACTTATTAATTTTC-AAA
* * * * * * *
16803498 TATGAATAGATTAATATTATTTTATTCCAAACAAACTTATATGAACAAAAAC
129 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
* * * *
16803550 ATTTGTTTTATGACAAAAGAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATAATCATA
1 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * * * * * * * *
16803615 ATTATTTAAACTGGTT-TGACAAACAAAATTATTTTTTAAATCCCATACTTATTAATTTTTAAAA
66 ACTATTTGAACTGGTTCAG-TAAACATATTTATTTTTTAAATCTCTTACTTATTAA-TTTTCAAA
* *
16803679 TATTAATAAATTTGTTTTA-TTTATTT
129 TATTAATAAATTAGTATTATTTTATTT
16803705 TGAAAAAGTT
Statistics
Matches: 1834, Mismatches: 387, Indels: 190
0.76 0.16 0.08
Matches are distributed among these distances:
169 1 0.00
170 24 0.01
171 68 0.04
172 4 0.00
173 2 0.00
174 1 0.00
175 40 0.02
176 40 0.02
177 137 0.07
178 11 0.01
179 85 0.05
180 256 0.14
181 766 0.42
182 248 0.14
183 18 0.01
184 41 0.02
185 18 0.01
186 74 0.04
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (180 bp):
AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
ACTATTTGAACTGGTTCAGTAAACATATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAATA
TTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAGAAAC
Found at i:16802606 original size:361 final size:361
Alignment explanation
Indices: 16801439--16803704 Score: 1823
Period size: 361 Copynumber: 6.3 Consensus size: 361
16801429 TCAAATAAAA
* * *
16801439 AATTGTTCAAATAGTCA-AATCTATTTGAAATTGTTTAGTAAACA-AATTTATATTTTTAAATCT
1 AATTGTTCAAATAGTCATAA-CTATTTGAACTTGTTCAG-AAA-ATAGTTTAT-TTTTTAAATCT
* * * *
16801502 CTTACTCATTAATTTTTCAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTATATGA
62 CTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGA
** * * * * * * *
16801567 ACTGAAATAATTGTTTTATGACT-AAAC-AAAGGTTAGAATGATTTAAAATAGATAACTATTCTA
127 ACAAAAACAATTGTTTTATGAATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAA
* * * *
16801630 ATAGTCTTAACTATTTGAACTGGATCAGTAAACATATTTATTTTTTTAAATCTCTTACTTATTAA
192 ATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTA-TTTTTTAAATCTTTTACTTATTAA
* * * * *
16801695 TTTTT-AGAATATTATTAAATTAGTATTATTTTAATCTGAATAAGCATGTAT-AGA-AAGAAACA
256 TTTTTAAGAATATTAATAAATTA-TATTATTTTATTC-AAATAAACTTGTATGA-ACAAG-AACA
* * **
16801757 ATTGTTTTATGACAAAA-TAAAGATCATAATGATTT-AAGATAGAT
317 ATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAA-ATAGAT
* * *
16801801 AATTGTTCAAATAGTCATAACTATTTGAACTGTTTTC-GTAAATAGATTTAGTTTTTAAA--TCT
1 AATTGTTCAAATAGTCATAACTATTTGAACT-TGTTCAGAAAATAG-TTTATTTTTTAAATCTCT
* * * ****
16801863 T--TTATTAATTTTCAAAATATTAATAGATCAGTATTATTTTATTT-TGCCAA--TT-T-TG--C
64 TACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAAC
** * * ** * *
16801919 ATGAATAGATTGTTTTATGACT-AAACAAAAGGTCATAACAATTTCAAATAGATAATTGTTCAAA
129 AAAAACA-ATTGTTTTATGAATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAA
* * * * * *
16801983 TGGACATGATTATTTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTCTACCTATTAA-T
193 TAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATT
* * **
16802047 TTTCAGAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTGTATGAA-TTGAAACAATT
258 TTTAAGAATATTAATAAATTA-TATTATTTTA-TTCAAATAAACTTGTATGAACAAG-AACAATT
* * * * *
16802111 ATTTTATGATAAAACAAAAGATCATAACTATTTGAAATAAAT
320 GTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGAT
* * * * *
16802153 AATTGTTCAAACAGTCATAACTATTTGAACTTG--CATGGTAAACAGATTTATTTTTTAACTCTT
1 AATTGTTCAAATAGTCATAACTATTTGAACTTGTTCA--GAAAATAG-TTTATTTTTTAAATCTC
* * ** * * * * *
16802216 TTACTTATCAATATTTGGAATATTAATAAACTAGTACTGTTTTATTTCAAATACGCTTGTATGAA
63 TTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAA
* * * * * *
16802281 CAAAAACATTTGGTTTAT-AATGAAACAAAAGGTCATAATTATTTGGAAGAGATAATTATTCAAA
128 CAAAAACAATTGTTTTATGAATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAA
* * * * *
16802345 TAGTCATAATTATTTGAACATGTTCA-AAAAAAAATTTATTTTTTAAAT-TTTTACTTATTAATT
193 TAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATT
* **
16802408 TTTGA-AATATTAATAAATTTATATTATTTTATTCAAAATAAACTTGTATGAACAAGAATGATTG
258 TTTAAGAATATTAATAAA-TTATATTATTTTATTC-AAATAAACTTGTATGAACAAGAACAATTG
16802472 TTTTATGACAAAACAAAAAGGTCATAACAATTTGAAATAGAT
321 TTTTATGACAAAAC-AAAAGGTCATAACAATTTGAAATAGAT
16802514 AATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGTTTCATTTTTTAAATCTCTT
1 AATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGTTT-ATTTTTTAAATCTCTT
* * ** ** * **
16802579 ACTCATTATTTTTTGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCCTATATGAATT
65 ACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACA
* * * * * * * *
16802644 GATACAATTGTTTTA-GGACAAAACAAAAGTTCAAAATGATTTTAAATAGATAATTACTCAAATA
130 AAAACAATTGTTTTATGAATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATA
* * * * * * *
16802708 GTTATGACTATTTGATCTTGTTC-GATAAATATATTTATTTTTAAAATCTTTTATTTATTAATTG
195 GTCATAACTATTTGAACTTGTTCAG-TAAACATATTTATTTTTTAAATCTTTTACTTATTAATTT
* * * * * * * * *
16802772 TCAA-AATATTAAAAAATTAATATTATTTTAATCCGAATAAGCTTGTATGGAGAAAAACAATTTT
259 TTAAGAATATTAATAAATT-ATATTATTTT-ATTCAAATAAACTTGTATGAACAAGAACAA-TTG
* * * *
16802836 TTTTATGATAAAACAAAATGCCATAACAATTTGAAATAAAT
321 TTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGAT
* * * * ** * *
16802877 AATTGTTCAAACAGTTATGACTATTTGAACTTATTTGGTAAACA-AATTTATTTTTTAAATCTTT
1 AATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAG-AAA-ATAGTTTATTTTTTAAATCTCT
* * * * * * *
16802941 TACTTATTAAATGTCT-AAATATTAATAAATTTGGATAATTTTATTTGAAATAAGCTTGTAT-AA
64 TACTTATT-AATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAA
* * *
16803004 GTAGAAAA-AATTGTTTTATG-ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCA
128 -CA-AAAACAATTGTTTTATGAATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCA
* * * *
16803067 AATAATCATAACTATTTGAACTTGTTCA--AAAAATAGTTTCATTTTTTAAATCTCTTACTCATT
191 AATAGTCATAACTATTTGAACTTGTTCAGTAAACATA-TTT-ATTTTTTAAATCTTTTACTTATT
* * * * * *** *
16803130 --GTTTTAAGAATATTAATAAATTAGATTTATGTTATTTCAAATAAGCTTTTCCAAACAAAAACA
254 AATTTTTAAGAATATTAATAAATTATA-TTATTTTA-TTCAAATAAACTTGTATGAACAAGAACA
* * * *
16803193 ATTGCTTTGTGATAAAACAAAAGGTCATAACTATTTGAAATAGAT
317 ATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGAT
* * * ** * *
16803238 AATTGTTCAAACAGTCATAACTATTTGCAC-TGGTCAGGCCAATAGATTCATTTTTTAAATCTGT
1 AATTGTTCAAATAGTCATAACTATTTGAACTTGTTCA-GAAAATAG-TTTATTTTTTAAATCTCT
* * * * * ** *
16803302 TACTTATGAATTTTCAAAATATTAATACATTAGCATTACTTTATGCCGAATAATGC-TATATGAA
64 TACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAA-GCTTATATGAA
* * * * * ** *
16803366 CAAAAACAATTATTTTATGAA-AAAACAAATGGTCAAAATGATTTGAAATAAAGAATGGTTTAAA
128 CAAAAACAATTGTTTTATGAATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAA
* ** * * *
16803430 TAGTTATAACTAACTGAACTGGTTTAGTAAACAGATTTATTTTCTTAATATC--TT-C---TTAA
193 TAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTATTTT-TTAA-ATCTTTTACTTATTAA
* * * * * * *
16803489 TTTTCAA-AATATGAATAGATTAATATTATTTTATTCCAAACAAACTTATATGAACAAAAACATT
256 TTTTTAAGAATATTAATAAATT-ATATTATTTTATT-CAAATAAACTTGTATGAACAAGAACAAT
* * **
16803553 TGTTTTATGACAAAAGAAAAAGTCATAATGATTTGAAATAGAT
319 TGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGAT
* * * * * * ** * *
16803596 AATTGTTCAAATAATCATAATTATTTAAACTGGTT-TGACAAACAAAATTATTTTTTAAATCCCA
1 AATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGA-AAA-TAGTTTATTTTTTAAATCTCT
* *
16803660 TACTTATTAATTTTTAAAATATTAATAAATTTGTTTTA-TTTATTT
64 TACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTT
16803705 TGAAAAAGTT
Statistics
Matches: 1525, Mismatches: 307, Indels: 149
0.77 0.15 0.08
Matches are distributed among these distances:
349 1 0.00
350 9 0.01
351 101 0.07
352 135 0.09
353 3 0.00
354 5 0.00
356 35 0.02
357 48 0.03
358 148 0.10
359 20 0.01
360 85 0.06
361 446 0.29
362 175 0.11
363 281 0.18
364 32 0.02
365 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (361 bp):
AATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGTTTATTTTTTAAATCTCTTA
CTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAACAA
AAACAATTGTTTTATGAATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAG
TCATAACTATTTGAACTTGTTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTT
AAGAATATTAATAAATTATATTATTTTATTCAAATAAACTTGTATGAACAAGAACAATTGTTTTA
TGACAAAACAAAAGGTCATAACAATTTGAAATAGAT
Found at i:16802985 original size:724 final size:712
Alignment explanation
Indices: 16801431--16803690 Score: 2136
Period size: 724 Copynumber: 3.1 Consensus size: 712
16801421 TAATGACTTC
* * * *
16801431 AAATAAAAAATTGTTCAAATAGTCA-AATCTATTTGAAATTGTTTAGTAAACAAATTTATATTTT
1 AAATAAATAATTGTTCAAACAGTCATAA-CTATTTGAACTTGTTTGGTAAACAAATTTAT-TTTT
* * * * *
16801495 TAAATCTCTTACTCATTAATTTTTCAAATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCT
64 TAAATCTTTTACTTATTAA-ATTTCAAATATTAATAAATTAGTA-TATTTTATTTCAAATAAGCT
* * * * * * * *
16801560 TATATGAACTGAAATAATTGTTTTATGACTAAAC-AAAGGTTAGAATGATTTAAAATAGATAACT
127 TGTATGAAC-AAAAAAATTGTTTTAT-AATAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * * * * *
16801624 ATTCTAATAGTCTTAACTATTTGAACTGGATCAGTAAACATATTTATTTTTTTAAATCTCTTACT
190 ATTCAAATAGTCATAACTATTTGAACT-GTTCA-AAAAAAAATTTA-TTTTTTAAATCTCTTACT
* * * *
16801689 TATTAATTTTTAGAATATTATTAAATTAGTATTATTTTAATCTGAATAAGCATGTATAGA-AAGA
252 TATTAATTTTTAGAATATTAATAAATTA-TATTATTTTATTC-AAATAAGCTTGTATA-ACAAG-
* * **
16801753 AACAATTGTTTTATGAC-AAA-ATAAAGATCATAATGATTT-AAGATAGATAATTGTTCAAATAG
313 AACAATTGTTTTATGACAAAACAAAAAGGTCATAACAATTTGAA-ATAGATAATTGTTCAAATAG
* * *
16801815 TCATAACTATTTGAACTGTTTTC-GTAAATAGATTT-AGTTTTTAAATCTTT--TATTAATTTTC
377 TCATAACTATTTGAACT-TGTTCAGAAAATAG-TTTCATTTTTTAAATCTTTACTATTAATTTTC
* * ** * * *
16801876 AAAATATTAATAGATCAGTATTATTTTATTTTG-CCAA--T-TTTGCATGAATA-GATTGTTTTA
440 AAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTATATGAATG-ATACAATTGTTTTA
* * ** ** * *
16801936 TGACTAAACAAAAGGTCATAACAATTTCAAATAGATAATTGTTCAAATGGACATGATTATTTGAA
504 TGACAAAACAAAAGGTCAAAATGATTTCAAATAGATAATTACTCAAATAGACATGACTATTTGAA
* * * *
16802001 CTTGTTCAGTAAACATATTTATTTTTTAAATCTTCTACCTATTAATTTTCAGAATATTAATAAAT
569 CTTGTTCAGTAAACATATTTATTTTTAAAATCTTCTACCTATTAATTGTCAAAATATTAAAAAAT
* * * ***
16802066 TAGTATTATTTTATTTCGAATAAACTTGTATGAATTGAAACAATTATTTTATGATAAAACAAAAG
634 TAATATTATTTTAATCCGAATAAACTTGTATGAAGAAAAACAATTATTTTATGATAAAACAAAAG
* *
16802131 ATCATAACTATTTG
699 ACCATAACAATTTG
** *
16802145 AAATAAATAATTGTTCAAACAGTCATAACTATTTGAACTTGCATGGTAAACAGATTTATTTTTTA
1 AAATAAATAATTGTTCAAACAGTCATAACTATTTGAACTTGTTTGGTAAACAAATTTATTTTTTA
* * ** * * *
16802210 ACTCTTTTACTTATCAATATTTGGAATATTAATAAACTAGTACTGTTTTATTTCAAATACGCTTG
66 AATCTTTTACTTATTAA-ATTTCAAATATTAATAAATTAGTA-TATTTTATTTCAAATAAGCTTG
* * * * *
16802275 TATGAACAAAAACATTTGGTTTATAATGAAACAAAAGGTCATAATTATTTGGAAGAGATAATTAT
129 TATGAACAAAAA-AATTGTTTTATAAT-AAACAAAAGGTCATAATGATTTGAAATAGATAATTAT
* *
16802340 TCAAATAGTCATAATTATTTGAACATGTTCAAAAAAAAATTTATTTTTTAAAT-TTTTACTTATT
192 TCAAATAGTCATAACTATTTGAAC-TGTTCAAAAAAAAATTTATTTTTTAAATCTCTTACTTATT
* **
16802404 AATTTTT-GAAATATTAATAAATTTATATTATTTTATTCAAAATAAACTTGTATGAACAAGAATG
256 AATTTTTAG-AATATTAATAAA-TTATATTATTTTATTC-AAATAAGCTTGTAT-AACAAGAACA
16802468 ATTGTTTTATGACAAAACAAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATA
317 ATTGTTTTATGACAAAACAAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATA
* ***
16802533 ACTATTTGAACTTGTTCAGAAAATAGTTTCATTTTTTAAATCTCTTACTCATTATTTTTTGGAAT
382 ACTATTTGAACTTGTTCAGAAAATAGTTTCATTTTTTAAATCT-TTACT-ATTAATTTTCAAAAT
*
16802598 ATTAATAAATTAGTATTATTTTATTTTGAATAAGCCTATATGAATTGATACAATTGTTTTAGGAC
445 ATTAATAAATTAGTATTATTTTATTTTGAATAAG-CTATATGAA-TGATACAATTGTTTTATGAC
* * ** *
16802663 AAAACAAAAGTTCAAAATGATTTTAAATAGATAATTACTCAAATAGTTATGACTATTTGATCTTG
508 AAAACAAAAGGTCAAAATGATTTCAAATAGATAATTACTCAAATAGACATGACTATTTGAACTTG
* * **
16802728 TTC-GATAAATATATTTATTTTTAAAATCTTTTATTTATTAATTGTCAAAATATTAAAAAATTAA
573 TTCAG-TAAACATATTTATTTTTAAAATCTTCTACCTATTAATTGTCAAAATATTAAAAAATTAA
* * *
16802792 TATTATTTTAATCCGAATAAGCTTGTATGGAGAAAAACAATTTTTTTTATGATAAAACAAAATG-
637 TATTATTTTAATCCGAATAAACTTGTATGAAGAAAAACAA-TTATTTTATGATAAAACAAAA-GA
16802856 CCATAACAATTTG
700 CCATAACAATTTG
* * *
16802869 AAATAAATAATTGTTCAAACAGTTATGACTATTTGAACTTATTTGGTAAACAAATTTATTTTTTA
1 AAATAAATAATTGTTCAAACAGTCATAACTATTTGAACTTGTTTGGTAAACAAATTTATTTTTTA
* * * *
16802934 AATCTTTTACTTATTAAATGTCTAAATATTAATAAATTTGGATAATTTTATTTGAAATAAGCTTG
66 AATCTTTTACTTATTAAATTTC-AAATATTAATAAATTAGTAT-ATTTTATTTCAAATAAGCTTG
*
16802999 TAT-AAGTAGAAAAAATTGTTTTATGACA-AAACAAAAGGTCATAATGATTTGAAATAGATAATT
129 TATGAA-CA-AAAAAATTGTTTTAT-A-ATAAACAAAAGGTCATAATGATTTGAAATAGATAATT
* * * * *
16803062 GTTCAAATAATCATAACTATTTGAACTTGTTCAAAAAATAGTTTCATTTTTTAAATCTCTTACTC
190 ATTCAAATAGTCATAACTATTTGAAC-TGTTCAAAAAAAAATTT-ATTTTTTAAATCTCTTACTT
* * * * * *
16803127 ATT-GTTTTAAGAATATTAATAAATTAGATTTATGTTATTTCAAATAAGCTTTTCCA-AACAAAA
253 ATTAATTTTTAGAATATTAATAAATTATA-TTATTTTA-TTCAAATAAGCTTGT--ATAACAAGA
* * * * *
16803190 ACAATTGCTTTGTGATAAAAC-AAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAACAGTC
314 ACAATTGTTTTATGACAAAACAAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTC
* * ** * *
16803254 ATAACTATTTGCAC-TGGTCAGGCCAATAGATTCATTTTTTAAATCTGTTACTTATGAATTTTCA
379 ATAACTATTTGAACTTGTTCA-GAAAATAGTTTCATTTTTTAAATCT-TTAC-TATTAATTTTCA
* * * *** ** * *
16803318 AAATATTAATACATTAGCATTACTTTATGCCGAATAATGCTATATGAACAAAAACAATTATTTTA
441 AAATATTAATAAATTAGTATTATTTTATTTTGAATAA-GCTATATGAA-TGATACAATTGTTTTA
* * * * * *** * ** * **
16803383 TGAAAAAACAAATGGTCAAAATGATTTGAAATAAAGAATGGTTTAAATAGTTATAACTAACTGAA
504 TGACAAAACAAAAGGTCAAAATGATTTCAAATAGATAATTACTCAAATAGACATGACTATTTGAA
* * * * * * * *
16803448 CTGGTTTAGTAAACAGATTTATTTTCTTAATATC-T-T--C--TTAATTTTCAAAATATGAATAG
569 CTTGTTCAGTAAACATATTTA-TTT-TTAAAATCTTCTACCTATTAATTGTCAAAATATTAAAAA
* * * * * * * * *
16803507 ATTAATATTATTTTATTCCAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAAGAAA
632 ATTAATATTATTTTAATCCGAATAAACTTGTATGAAGAAAAACAATTATTTTATGATAAAACAAA
* **
16803572 A-AGTCATAATGATTTG
697 AGA-CCATAACAATTTG
* * * * * * ** *
16803588 AAATAGATAATTGTTCAAATAATCATAATTATTTAAACTGGTTTGACAAACAAAATTATTTTTTA
1 AAATAAATAATTGTTCAAACAGTCATAACTATTTGAACTTGTTTGGTAAACAAATTTATTTTTTA
*** * *
16803653 AATCCCATACTTATTAATTTTTAAAATATTAATAAATT
66 AATCTTTTACTTATTAA-ATTTCAAATATTAATAAATT
16803691 TGTTTTATTT
Statistics
Matches: 1272, Mismatches: 224, Indels: 95
0.80 0.14 0.06
Matches are distributed among these distances:
710 1 0.00
711 67 0.05
712 32 0.03
713 157 0.12
714 103 0.08
715 3 0.00
716 1 0.00
717 37 0.03
718 2 0.00
719 110 0.09
720 57 0.04
721 1 0.00
722 8 0.01
723 163 0.13
724 429 0.34
725 79 0.06
726 21 0.02
727 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (712 bp):
AAATAAATAATTGTTCAAACAGTCATAACTATTTGAACTTGTTTGGTAAACAAATTTATTTTTTA
AATCTTTTACTTATTAAATTTCAAATATTAATAAATTAGTATATTTTATTTCAAATAAGCTTGTA
TGAACAAAAAAATTGTTTTATAATAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAA
ATAGTCATAACTATTTGAACTGTTCAAAAAAAAATTTATTTTTTAAATCTCTTACTTATTAATTT
TTAGAATATTAATAAATTATATTATTTTATTCAAATAAGCTTGTATAACAAGAACAATTGTTTTA
TGACAAAACAAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
ACTTGTTCAGAAAATAGTTTCATTTTTTAAATCTTTACTATTAATTTTCAAAATATTAATAAATT
AGTATTATTTTATTTTGAATAAGCTATATGAATGATACAATTGTTTTATGACAAAACAAAAGGTC
AAAATGATTTCAAATAGATAATTACTCAAATAGACATGACTATTTGAACTTGTTCAGTAAACATA
TTTATTTTTAAAATCTTCTACCTATTAATTGTCAAAATATTAAAAAATTAATATTATTTTAATCC
GAATAAACTTGTATGAAGAAAAACAATTATTTTATGATAAAACAAAAGACCATAACAATTTG
Found at i:16806139 original size:26 final size:26
Alignment explanation
Indices: 16806107--16806167 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 26
16806097 TAAAACATTG
16806107 TTATTAATAATTTGTATATT-AAATAA
1 TTATTAATAATTT-TATATTGAAATAA
*
16806133 TTATTAATAATTTTTTATTGAAATAA
1 TTATTAATAATTTTATATTGAAATAA
16806159 TTATTAATA
1 TTATTAATA
16806168 TTAAATAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
25 5 0.15
26 28 0.85
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (26 bp):
TTATTAATAATTTTATATTGAAATAA
Found at i:16806306 original size:19 final size:20
Alignment explanation
Indices: 16806270--16806313 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
16806260 ATATTATTCT
*
16806270 ATTATATAAGCAAATTATAA
1 ATTATATAAACAAATTATAA
16806290 ATTATATAAAC-AATTATAA
1 ATTATATAAACAAATTATAA
*
16806309 TTTAT
1 ATTAT
16806314 CTAATAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTATATAAACAAATTATAA
Found at i:16806406 original size:22 final size:22
Alignment explanation
Indices: 16806371--16806412 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
16806361 ATATATAACA
*
16806371 ATAATAAATAAATTATTAATGT
1 ATAATAAATAAATTAATAATGT
* *
16806393 ATAATAATTTAATTAATAAT
1 ATAATAAATAAATTAATAAT
16806413 ATTTATTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
ATAATAAATAAATTAATAATGT
Found at i:16806586 original size:18 final size:18
Alignment explanation
Indices: 16806532--16806588 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
16806522 TAGTTATAAC
16806532 ATTATAA-TACATATAATA
1 ATTATAAGTAC-TATAATA
*
16806550 ATAAT-AGTA-TATAATTA
1 ATTATAAGTACTATAA-TA
16806567 ATTATAAGTACTATAATA
1 ATTATAAGTACTATAATA
16806585 ATTA
1 ATTA
16806589 GTAATAATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
16 5 0.15
17 7 0.21
18 16 0.48
19 5 0.15
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (18 bp):
ATTATAAGTACTATAATA
Found at i:16806596 original size:32 final size:34
Alignment explanation
Indices: 16806532--16806596 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 34
16806522 TAGTTATAAC
16806532 ATTATAATACATATAATAATAATAGTATATAATTA
1 ATTATAATACATATAATAAT-ATAGTATATAATTA
16806567 ATTATAAGTAC-TATAATAAT-TAGTA-ATAAT
1 ATTATAA-TACATATAATAATATAGTATATAAT
16806597 CTTAAACTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
32 5 0.17
33 5 0.17
35 16 0.55
36 3 0.10
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.40
Consensus pattern (34 bp):
ATTATAATACATATAATAATATAGTATATAATTA
Found at i:16808305 original size:22 final size:23
Alignment explanation
Indices: 16808237--16808312 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 23
16808227 TTATAATCGT
*
16808237 TATTAA-ATAATATTAATTATTTA
1 TATTAATATAA-ATTAATTATATA
** *
16808260 TATTAATATAAACAATATTTTATA
1 TATTAATATAAATTA-ATTATATA
*
16808284 TATTTATAT-AATTAATTATATAA
1 TATTAATATAAATTAATTATAT-A
16808307 TATTAA
1 TATTAA
16808313 ATTATTATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
22 6 0.15
23 17 0.41
24 18 0.44
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (23 bp):
TATTAATATAAATTAATTATATA
Found at i:16808319 original size:22 final size:22
Alignment explanation
Indices: 16808238--16808319 Score: 52
Period size: 20 Copynumber: 4.0 Consensus size: 22
16808228 TATAATCGTT
* *
16808238 ATTAAATAATATT-AATTATTT
1 ATTATATAATATTAAATTATTA
* *
16808259 A-TAT-TAATATAAACAATATT-
1 ATTATATAATATTAA-ATTATTA
* *
16808279 -TTATAT-AT-TTATATAATTA
1 ATTATATAATATTAAATTATTA
16808298 ATTATATAATATTAAATTATTA
1 ATTATATAATATTAAATTATTA
16808320 TTTTGTTATA
Statistics
Matches: 44, Mismatches: 9, Indels: 15
0.65 0.13 0.22
Matches are distributed among these distances:
18 4 0.09
19 8 0.18
20 14 0.32
21 9 0.20
22 9 0.20
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTATATAATATTAAATTATTA
Found at i:16809183 original size:21 final size:19
Alignment explanation
Indices: 16809159--16809206 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
16809149 ATTTCTATCT
16809159 TAAATTAAATATTATTTAAGA
1 TAAATTAAATA-TATTTAA-A
16809180 TAAATTAAATA-ATTTAAA
1 TAAATTAAATATATTTAAA
16809198 -AAATTAAAT
1 TAAATTAAAT
16809207 TAATATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.33
18 1 0.04
19 6 0.22
21 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
TAAATTAAATATATTTAAA
Found at i:16809646 original size:24 final size:24
Alignment explanation
Indices: 16809613--16809675 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
16809603 TATATTAAAC
*
16809613 TAATAGTTTTGATAAATT-ATTAAT
1 TAATAATTTTGATAAATTAATT-AT
* *
16809637 TAATAATTTTGATTATTTAATTAT
1 TAATAATTTTGATAAATTAATTAT
*
16809661 TAATAATTTTAATAA
1 TAATAATTTTGATAA
16809676 TAATATAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (24 bp):
TAATAATTTTGATAAATTAATTAT
Found at i:16809978 original size:30 final size:28
Alignment explanation
Indices: 16809903--16809978 Score: 66
Period size: 30 Copynumber: 2.6 Consensus size: 28
16809893 AGTTATTAAT
* *
16809903 TATTTTAA-TAATTTATAATACTAATAA
1 TATTATAATTAATTAATAATACTAATAA
*
16809930 TATTATAATT-ATCCTAATAATTACTAATGA
1 TATTATAATTAAT--TAATAA-TACTAATAA
*
16809960 TGATTATATTTAATTAATA
1 T-ATTATAATTAATTAATA
16809979 TTATATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
27 9 0.23
28 1 0.03
29 5 0.13
30 14 0.36
31 8 0.21
32 2 0.05
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (28 bp):
TATTATAATTAATTAATAATACTAATAA
Found at i:16810188 original size:22 final size:22
Alignment explanation
Indices: 16810162--16810206 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
16810152 TATGAGTGGA
**
16810162 AATATAGATTATCTATATTTAT
1 AATATAGATTATAAATATTTAT
*
16810184 AATATATATTATAAATATTTAT
1 AATATAGATTATAAATATTTAT
16810206 A
1 A
16810207 TTTTAATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
AATATAGATTATAAATATTTAT
Found at i:16810225 original size:24 final size:25
Alignment explanation
Indices: 16810161--16810226 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 25
16810151 ATATGAGTGG
*
16810161 AAATATAGATTATCTATATTTATAAT
1 AAATATA-AATATCTATATTTATAAT
*
16810187 ATATATTATAAATATTTATATTT-TAAT
1 A-A-A-TATAAATATCTATATTTATAAT
16810214 AAATATAAATATC
1 AAATATAAATATC
16810227 ATTAAATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
24 9 0.26
25 1 0.03
26 2 0.06
27 6 0.18
28 12 0.35
29 4 0.12
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (25 bp):
AAATATAAATATCTATATTTATAAT
Found at i:16810799 original size:23 final size:24
Alignment explanation
Indices: 16810773--16810819 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
16810763 TTAGTAATAT
16810773 TAATAGTATTA-AAATTAACTATA
1 TAATAGTATTATAAATTAACTATA
** *
16810796 TAATCTTATTATAAATTAATTATA
1 TAATAGTATTATAAATTAACTATA
16810820 AAATTAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
TAATAGTATTATAAATTAACTATA
Found at i:16810825 original size:12 final size:12
Alignment explanation
Indices: 16810782--16810880 Score: 66
Period size: 12 Copynumber: 8.7 Consensus size: 12
16810772 TTAATAGTAT
*
16810782 TAAAATTAACTA
1 TAAAATTAATTA
* *
16810794 TATAATCTTATTA
1 TAAAAT-TAATTA
16810807 T-AAATTAATTA
1 TAAAATTAATTA
16810818 TAAAATTAA-TA
1 TAAAATTAATTA
*
16810829 TAAAAATAATTA
1 TAAAATTAATTA
* *
16810841 T--TATTATTTA
1 TAAAATTAATTA
*
16810851 TTAAA-T-ATTA
1 TAAAATTAATTA
* *
16810861 TATATTTAATTA
1 TAAAATTAATTA
16810873 TAAAATTA
1 TAAAATTA
16810881 TTTTTTAATA
Statistics
Matches: 64, Mismatches: 16, Indels: 14
0.68 0.17 0.15
Matches are distributed among these distances:
10 12 0.19
11 18 0.28
12 29 0.45
13 5 0.08
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (12 bp):
TAAAATTAATTA
Found at i:16811520 original size:5 final size:5
Alignment explanation
Indices: 16811512--16811550 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
16811502 TTAATAATTA
16811512 ATAAT ATAAT ATAAT ATAAT ATAAT -T-AT ATTAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A-TAAT ATAAT
16811551 TGGTTAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 2 0.06
4 1 0.03
5 25 0.81
6 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
ATAAT
Found at i:16812209 original size:17 final size:17
Alignment explanation
Indices: 16812175--16812212 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
16812165 ATATAGTATT
*
16812175 ATTATATTATTATTTAA
1 ATTATATTATTATATAA
16812192 ATTATATTATT-TGATAA
1 ATTATATTATTAT-ATAA
16812209 ATTA
1 ATTA
16812213 AATAATTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTATATTATTATATAA
Found at i:16814753 original size:18 final size:18
Alignment explanation
Indices: 16814713--16814758 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
16814703 TTTTATTTAT
* *
16814713 ATTAATTAACATTTAATA
1 ATTAATTAATATTGAATA
* *
16814731 TTTAATTAATATTGATTA
1 ATTAATTAATATTGAATA
16814749 ATTAATTAAT
1 ATTAATTAAT
16814759 TATAATAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTAATTAATATTGAATA
Found at i:16815211 original size:23 final size:23
Alignment explanation
Indices: 16815184--16815237 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
16815174 TTGTTTATAA
16815184 TAATAATAATTAT-AACAATTATT
1 TAATAATAATTATAAACAATTA-T
* ** *
16815207 TAATATTTTTTATAAATAATTAT
1 TAATAATAATTATAAACAATTAT
16815230 TAATAATA
1 TAATAATA
16815238 TAATTAATTA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATAATAATTATAAACAATTAT
Found at i:16815229 original size:10 final size:10
Alignment explanation
Indices: 16815216--16815257 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
16815206 TTAATATTTT
16815216 TTATAAATAA
1 TTATAAATAA
*
16815226 TTATTAATAA
1 TTATAAATAA
*
16815236 -TATAATTAA
1 TTATAAATAA
*
16815245 TTATAAATTA
1 TTATAAATAA
16815255 TTA
1 TTA
16815258 ATTGATTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
TTATAAATAA
Found at i:16815245 original size:19 final size:19
Alignment explanation
Indices: 16815217--16815275 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
16815207 TAATATTTTT
*
16815217 TATAAATAATTATTAATAA
1 TATAATTAATTATTAATAA
* *
16815236 TATAATTAATTATAAATTA
1 TATAATTAATTATTAATAA
* *
16815255 T-TAATTGATTAAATAATAA
1 TATAATTAATT-ATTAATAA
16815274 TA
1 TA
16815276 ACTATATTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
18 8 0.26
19 23 0.74
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
TATAATTAATTATTAATAA
Found at i:16815271 original size:26 final size:26
Alignment explanation
Indices: 16815224--16815276 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16815214 TTTTATAAAT
* *
16815224 AATTATTAATAATATAATTAATTATA
1 AATTATTAATAATATAAATAATAATA
*
16815250 AATTATTAATTGAT-TAAATAATAATA
1 AATTATTAA-TAATATAAATAATAATA
16815276 A
1 A
16815277 CTATATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
AATTATTAATAATATAAATAATAATA
Found at i:16815670 original size:10 final size:10
Alignment explanation
Indices: 16815655--16815689 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
16815645 TTATTCATCA
16815655 TAATAATTAT
1 TAATAATTAT
16815665 TAATAATTAAT
1 TAATAATT-AT
*
16815676 TAATAATAAT
1 TAATAATTAT
16815686 TAAT
1 TAAT
16815690 TAACCATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TAATAATTAT
Found at i:16815677 original size:14 final size:14
Alignment explanation
Indices: 16815654--16815692 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
16815644 GTTATTCATC
*
16815654 ATAA-TAATTATTA
1 ATAATTAATTAATA
16815667 ATAATTAATTAATA
1 ATAATTAATTAATA
16815681 ATAATTAATTAA
1 ATAATTAATTAA
16815693 CCATCAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATTAATTAATA
Found at i:16815976 original size:16 final size:16
Alignment explanation
Indices: 16815948--16815990 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
16815938 TAAATACAAT
*
16815948 TATTAATTA-ATATTA
1 TATTTATTATATATTA
16815963 TATTTATTATATATTA
1 TATTTATTATATATTA
*
16815979 TAATTA-TATATA
1 TATTTATTATATA
16815991 ATAAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTATTATATATTA
Found at i:16815986 original size:13 final size:13
Alignment explanation
Indices: 16815946--16816001 Score: 51
Period size: 13 Copynumber: 4.1 Consensus size: 13
16815936 CCTAAATACA
16815946 ATTATTAATTA-AT
1 ATTA-TAATTATAT
16815959 ATTATATTTATTATAT
1 ATTATA---ATTATAT
16815975 ATTATAATTATAT
1 ATTATAATTATAT
* *
16815988 ATAATAAATATAT
1 ATTATAATTATAT
16816001 A
1 A
16816002 AATTTAATTC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
12 2 0.05
13 23 0.62
15 4 0.11
16 8 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTATAATTATAT
Found at i:16815998 original size:22 final size:21
Alignment explanation
Indices: 16815959--16816002 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
16815949 ATTAATTAAT
* * *
16815959 ATTATATTTATTATATATTATA
1 ATTATATATAATAAATA-TATA
16815981 ATTATATATAATAAATATATA
1 ATTATATATAATAAATATATA
16816002 A
1 A
16816003 ATTTAATTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATATATAATAAATATATA
Found at i:16816316 original size:25 final size:24
Alignment explanation
Indices: 16816285--16816346 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 24
16816275 ATTTAATTAT
*
16816285 AATATTAATATAATAATACATAAA
1 AATATTAATATAATAACACATAAA
**
16816309 AATAATTAA-ATAAATAACACATTTA
1 AAT-ATTAATAT-AATAACACATAAA
16816334 AATATT-ATATAAT
1 AATATTAATATAAT
16816347 TATTAAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 4 0.12
24 10 0.31
25 18 0.56
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (24 bp):
AATATTAATATAATAACACATAAA
Found at i:16816813 original size:21 final size:20
Alignment explanation
Indices: 16816759--16816815 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
16816749 TTATTAATAT
*
16816759 ATTATAA-TAATAAATTAAA
1 ATTATAATTAATATATTAAA
*
16816778 TTTAATAATTAATATATCTAAA
1 ATT-ATAATTAATATAT-TAAA
16816800 ATTATAATTAATATAT
1 ATTATAATTAATATAT
16816816 AATAAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 2 0.06
20 4 0.12
21 20 0.62
22 6 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTATAATTAATATATTAAA
Found at i:16816822 original size:21 final size:21
Alignment explanation
Indices: 16816753--16816822 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
16816743 TATTACTTAT
*
16816753 TAATATATTATAA-TAATA-A
1 TAATAAATTATAATTAATATA
*
16816772 -ATTAAATTTAATAATTAATATA
1 TAATAAA-TT-ATAATTAATATA
*
16816794 T-CTAAAATTATAATTAATATA
1 TAAT-AAATTATAATTAATATA
16816815 TAATAAAT
1 TAATAAAT
16816823 AATTTATTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
18 4 0.10
19 2 0.05
20 4 0.10
21 22 0.55
22 5 0.12
23 3 0.08
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATAAATTATAATTAATATA
Found at i:16816856 original size:13 final size:14
Alignment explanation
Indices: 16816838--16816870 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
16816828 ATTTATTTAT
16816838 AATTATA-TAGATA
1 AATTATATTAGATA
16816851 AATTATATTAGATA
1 AATTATATTAGATA
16816865 ATATTA
1 A-ATTA
16816871 ATAATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 7 0.39
15 4 0.22
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTATATTAGATA
Found at i:16817385 original size:18 final size:19
Alignment explanation
Indices: 16817351--16817386 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
16817341 TAATAGTCAT
16817351 ATATTAGTTAATATTTATA
1 ATATTAGTTAATATTTATA
*
16817370 ATATTA-TTACTATTTAT
1 ATATTAGTTAATATTTAT
16817387 GATAATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (19 bp):
ATATTAGTTAATATTTATA
Found at i:16817530 original size:18 final size:18
Alignment explanation
Indices: 16817503--16817537 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16817493 ATAATTTTAT
16817503 ATTATATATTATATAATA
1 ATTATATATTATATAATA
*
16817521 ATTATTTATTATATAAT
1 ATTATATATTATATAAT
16817538 TTAATTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATATTATATAATA
Found at i:16817840 original size:17 final size:17
Alignment explanation
Indices: 16817818--16817850 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16817808 TTATCAAATA
16817818 ATTTATATAA-ATTATTT
1 ATTTAT-TAATATTATTT
16817835 ATTTATTAATATTATT
1 ATTTATTAATATTATT
16817851 AATTAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTATTAATATTATTT
Found at i:16818166 original size:25 final size:25
Alignment explanation
Indices: 16818120--16818169 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
16818110 TAGATCAAAT
*
16818120 ATAATTTAATTTGATATTTTAATTA
1 ATAATTTAATTTGATATCTTAATTA
*
16818145 ATAATTTTATTATGATA-CTTAATTA
1 ATAATTTAATT-TGATATCTTAATTA
16818170 TGATTCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (25 bp):
ATAATTTAATTTGATATCTTAATTA
Found at i:16818680 original size:26 final size:27
Alignment explanation
Indices: 16818651--16818711 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
16818641 TAATTAAACT
16818651 TTAATTAAATATAAATTAAATAA-TAA
1 TTAATTAAATATAAATTAAATAAGTAA
* * * *
16818677 TTAATTAGATATTAGTTTAATAAGTTAA
1 TTAATTAAATATAAATTAAATAAG-TAA
16818705 TTAATTA
1 TTAATTA
16818712 TATAATTGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (27 bp):
TTAATTAAATATAAATTAAATAAGTAA
Found at i:16818779 original size:22 final size:21
Alignment explanation
Indices: 16818748--16818796 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
16818738 ACAAAACTAT
16818748 TTAATATATAATAATTATAATA
1 TTAATATATAATAATTA-AATA
* * *
16818770 TTAATTTATAATTATTAACTA
1 TTAATATATAATAATTAAATA
16818791 TTAATA
1 TTAATA
16818797 ATGATAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATATATAATAATTAAATA
Found at i:16818893 original size:22 final size:22
Alignment explanation
Indices: 16818861--16818903 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16818851 TATAAACAAT
*
16818861 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
16818883 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
16818904 TAACTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:16819101 original size:38 final size:37
Alignment explanation
Indices: 16819042--16819128 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 37
16819032 ATGTTATTAG
*
16819042 TAATAA-TAATATAATATTATTATTAATTT-ATTAAAA
1 TAATAATTAATATAATATTATTA-AAATTTCATTAAAA
16819078 TAATAATTAATA-AATTGATTATTAAAATTTCATTAAAA
1 TAATAATTAATATAA-T-ATTATTAAAATTTCATTAAAA
*
16819116 TAATTATTAATAT
1 TAATAATTAATAT
16819129 TTATAACTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
36 8 0.18
37 11 0.25
38 25 0.57
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (37 bp):
TAATAATTAATATAATATTATTAAAATTTCATTAAAA
Found at i:16819449 original size:38 final size:36
Alignment explanation
Indices: 16819405--16819480 Score: 109
Period size: 38 Copynumber: 2.1 Consensus size: 36
16819395 ACTTTATTCC
16819405 TAATA-TTATTATAAATAATAATAATCAAATATTATTAT
1 TAATATTTA-TATAAATAATAATAAT--AATATTATTAT
*
16819443 TAATATTTATATTAATAATAATAATAATATTATTAT
1 TAATATTTATATAAATAATAATAATAATATTATTAT
16819479 TA
1 TA
16819481 TTATAAGACT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
36 13 0.36
38 20 0.56
39 3 0.08
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (36 bp):
TAATATTTATATAAATAATAATAATAATATTATTAT
Found at i:16819455 original size:12 final size:12
Alignment explanation
Indices: 16819432--16819480 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
16819422 ATAATAATCA
*
16819432 AATATTATTATT
1 AATATTAATATT
*
16819444 AATATTTATATT
1 AATATTAATATT
* *
16819456 AATAATAATAAT
1 AATATTAATATT
*
16819468 AATATTATTATT
1 AATATTAATATT
16819480 A
1 A
16819481 TTATAAGACT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
AATATTAATATT
Found at i:16820369 original size:14 final size:14
Alignment explanation
Indices: 16820350--16820379 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
16820340 ATATTATTTG
16820350 AAATAATTACTATA
1 AAATAATTACTATA
*
16820364 AAATAATTATTATA
1 AAATAATTACTATA
16820378 AA
1 AA
16820380 TATTTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATAATTACTATA
Found at i:16821712 original size:349 final size:349
Alignment explanation
Indices: 16821070--16822019 Score: 838
Period size: 349 Copynumber: 2.7 Consensus size: 349
16821060 ATTTAAGTAA
* * * * * ** *
16821070 CAAGTTCAAATCGTTATGACTATTTGAACAATTATTTATTTCAAATTATTATGACTTTTTGTTTT
1 CAAGTTAAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTGTTTT
* * *
16821135 ATCATAAAACAATTATTTTTTTTCATACTAGCTTATTCAAAATAAAATAATATTAATTTATTAAT
66 ATCATAAAACAATTAGTTCTGTTCATACTAGCTTATTCAAAATAAAATAATATTAATTTATTAAT
* * * *
16821200 ATTTCGATAATTTATAAGTAAAAGATTTAAAAAAGAAATATGTTTGCCGAACAAGTTCAAATAAT
131 ATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAGAAATATGTTTGCCGAACAAGTTCAAATAAT
* * * * *
16821265 CATGACTATTTGAATAATAATCTATTTCAAATCATTGTGAGCTTTTGTTTTGTAATAAAATAATT
196 CATGACTATTTGAATAATAATCTATTTAAAATCATTATGACCATTTGTTTTGTAATAAAACAATT
*
16821330 GCTTTAGTTCATATCAGCCTATTTGAGATAAAATAATATTCCAAAAATTAAAGAATAATAGAATT
261 GCTTTAGTTCATAACAGCCTATTTGAGATAAAATAATATTCCAAAAATTAAAGAATAATAGAATT
16821395 AAAAAAATGAATTTTCTTATCGAT
326 AAAAAAATGAATTTTCTTATCGAT
16821419 CAAGTTAAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTGTTTT
1 CAAGTTAAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTGTTTT
* * * ***
16821484 GTCATAAAAACAATTGGTTCTGTTCAT-GTAAGCTTATTTTGAATAAAATAATA-TACATTTATT
66 ATCAT-AAAACAATTAGTTCTGTTCATACT-AGCTTATTCAAAATAAAATAATATTA-ATTTATT
* * * * *
16821547 AATATTCCAAAAATTAATAAGT-ATAGTTTTAGAAAATAAAGCTAT-TTT-CTGAACACA-TTCA
128 AATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAGAAA--TATGTTTGCCGAACA-AGTTCA
* * * * *
16821608 AATAGTTATGACTATTTGAATAATTATCTATTTAAAATTATTATGACCATTTGTTTTGTCATAAA
190 AATAATCATGACTATTTGAATAATAATCTATTTAAAATCATTATGACCATTTGTTTTGTAATAAA
* * *
16821673 CCAATTGTTTCTA-TTCA-AACAAGCTTATTTG-GAATAAAATAATTCTAATT--AATTAATATT
255 ACAATTGCTT-TAGTTCATAAC-AGCCTATTTGAG-ATAAAATAA---T-ATTCCAA--AA-ATT
* * * * *
16821733 CCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGT-TTACCGAGT
310 ---AAA-GAATAA-T-AGA-ATTAAAAAAATGAATTT-TCTTATCGA-T
* * * * * **
16821781 -AAGTTTAAATAGTTATGATTATTTAAACAATTATTTATTTCAAATCATTATGATC-TTTCATTT
1 CAAGTTAAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGA-CATTTTGTTT
* * * * * * * *
16821844 TATTATAAAACAGTT-GTTTCTATTCATACAAGTTTA-TCTGAAATAAAATAATACTAATATATT
65 TATCATAAAACAATTAG-TTCTGTTCATACTAGCTTATTC-AAAATAAAATAATATTAATTTATT
* * ** ** * * *
16821907 AACATTCTAAAAATTAATAAGTTGAAGATTTAAAAAATTAATTTGTTTACCGAACCAGTTCAAAT
128 AATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAGAAATATGTTTGCCGAACAAGTTCAAAT
* * * * **
16821972 AGTCATGTCTATTTGAACT-ATTATCTATTTCAAATTGTTATGA-CATTT
193 AATCATGACTATTTGAA-TAATAATCTATTTAAAATCATTATGACCATTT
16822020 TATTTTGTTG
Statistics
Matches: 489, Mismatches: 77, Indels: 59
0.78 0.12 0.09
Matches are distributed among these distances:
348 3 0.01
349 173 0.35
350 68 0.14
351 5 0.01
352 1 0.00
353 5 0.01
354 3 0.01
357 3 0.01
358 5 0.01
359 5 0.01
360 71 0.15
361 143 0.29
362 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (349 bp):
CAAGTTAAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTGTTTT
ATCATAAAACAATTAGTTCTGTTCATACTAGCTTATTCAAAATAAAATAATATTAATTTATTAAT
ATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAGAAATATGTTTGCCGAACAAGTTCAAATAAT
CATGACTATTTGAATAATAATCTATTTAAAATCATTATGACCATTTGTTTTGTAATAAAACAATT
GCTTTAGTTCATAACAGCCTATTTGAGATAAAATAATATTCCAAAAATTAAAGAATAATAGAATT
AAAAAAATGAATTTTCTTATCGAT
Found at i:16821793 original size:180 final size:182
Alignment explanation
Indices: 16821363--16822045 Score: 654
Period size: 180 Copynumber: 3.8 Consensus size: 182
16821353 TGAGATAAAA
* * * * * * *
16821363 TAATATTCCAAAAATTAA-AGAATAATAGAATTAAAAAAATGAATTT-TCTTATCGATCAAGTTA
1 TAATATTCCAAAAATTAATA-AGTAAAAG-ATTTAAAAAATAAATTTGT-TTACCGAACAAGTTC
* *
16821426 AAATAGTTATGACTATCTAAACAATTATCTATTTCAAAA-CATTATGACATTTTGTTTTGTCATA
63 AAATAGTTATGACTATTTAAACAATTATCTATTT-AAAATCATTATGACATTTTATTTTGTCATA
* * ** * * *
16821490 AAAACAATTGGTTCTGTTCATGTAAGCTTATTTTGAATAAAATAA-TATACATTTAT
127 AAAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATTCTA-ATTAAT
* * * ** * * *
16821546 TAATATTCCAAAAATTAATAAGT-ATAGTTTTAGAAAATAAAGCTATTTTCTGAACACA-TTCAA
1 TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCGAACA-AGTTCAA
* * * *
16821609 ATAGTTATGACTATTTGAATAATTATCTATTTAAAATTATTATGACCA-TTTGTTTTGTCAT-AA
65 ATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGA-CATTTTATTTTGTCATAAA
* *
16821672 ACCAATTGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATTCTAATTAAT
129 AACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATTCTAATTAAT
** *
16821726 TAATATTCC-AAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCGAGTAAGTTTAAA
1 TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCGAACAAGTTCAAA
* * * * * *
16821790 TAGTTATGATTATTTAAACAATTATTTATTTCAAATCATTATGATC-TTTCATTTTATTAT-AAA
66 TAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGA-CATTTTATTTTGTCATAAAA
* * * * *
16821853 ACAGTTGTTTCTATTCATACAAGTTTATCTGAAATAAAATAATACTAA-TATAT
130 ACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATTCTAATTA-AT
* * ** * *
16821906 TAACATTCTAAAAATTAATAAGTTGAAGATTTAAAAAATTAATTTGTTTACCGAACCAGTTCAAA
1 TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCGAACAAGTTCAAA
* * * * * ** ** *
16821971 TAGTCATGTCTATTTGAACTATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTGT-CAAA
66 TAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGACATTTTATTTTGTCATAAAAA
16822035 CAATTGTTTCT
131 CAATTGTTTCT
16822046 TATGATCAAA
Statistics
Matches: 412, Mismatches: 76, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
179 16 0.04
180 186 0.45
181 181 0.44
182 8 0.02
183 20 0.05
184 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (182 bp):
TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCGAACAAGTTCAAA
TAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGACATTTTATTTTGTCATAAAAA
CAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATTCTAATTAAT
Found at i:16821971 original size:361 final size:363
Alignment explanation
Indices: 16821363--16822045 Score: 809
Period size: 361 Copynumber: 1.9 Consensus size: 363
16821353 TGAGATAAAA
* * *
16821363 TAATATTCCAAAAATTAAAGAATAATAGAATTAAAAAAATGAATTTTCTTATCGATCAAGTTAAA
1 TAATATTCCAAAAATTAAAGAATAAAAGAATTAAAAAAATAAATTTTCTTACCGATCAAGTTAAA
** *
16821428 ATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTGTTTTGTCATAAAA
66 ATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTCATTTTATCATAAAA
* ** * * *
16821493 ACAATTGGTTCTGTTCATGTAAGCTTATTTTGAATAAAATAATATACATTTATTAATATTCCAAA
131 ACAATTGGTTCTATTCATACAAGCTTATTCTGAATAAAATAATATACATATATTAACATTCCAAA
* * * * *
16821558 AATTAATAAGTATAGTTTTAGAAAATAAAGCTATTTTCTGAACACATTCAAATAGTTATGACTAT
196 AATTAATAAGTATAGATTTAAAAAATAAAGCTATTTACCGAACACATTCAAATAGTCATGACTAT
*
16821623 TTGAA-TAATTATCTATTTAAAATTATTATGACCA-TTTGTTTTGTCAT-AAACCAATTGTTTCT
261 TTGAACT-ATTATCTATTTAAAATTATTATGA-CATTTTATTTTGTCATCAAA-CAATTGTTTCT
16821685 ATTCAAACAAGCTTATTTGGAATAAAATAATTCTAATTAAT
323 ATTCAAACAAGCTTATTTGGAATAAAATAATTCTAATTAAT
* *
16821726 TAATATTCC-AAAATTAATA-AGTAAAAG-ATTTAAAAAATAAATTTGT-TTACCGAGT-AAGTT
1 TAATATTCCAAAAATTAA-AGAATAAAAGAATTAAAAAAATAAATTT-TCTTACCGA-TCAAGTT
* * * * * *
16821786 TAAATAGTTATGATTATTTAAACAATTATTTATTTCAAATCATTATGATC-TTTCATTTTATTAT
63 AAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGA-CATTTCATTTTATCAT
* * *
16821850 -AAAACAGTTGTTTCTATTCATACAAGTTTA-TCTGAAATAAAATAATACTA-ATATATTAACAT
127 AAAAACAATTGGTTCTATTCATACAAGCTTATTCTG-AATAAAATAATA-TACATATATTAACAT
* * ** *
16821912 TCTAAAAATTAATAAGT-TGAAGATTTAAAAAATTAATTTGTTTACCGAAC-CAGTTCAAATAGT
190 TCCAAAAATTAATAAGTAT--AGATTTAAAAAATAAAGCTATTTACCGAACACA-TTCAAATAGT
* * * **
16821975 CATGTCTATTTGAACTATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTGTCAAACAATT
252 CATGACTATTTGAACTATTATCTATTTAAAATTATTATGACATTTTATTTTGTCATCAAACAATT
16822040 GTTTCT
317 GTTTCT
16822046 TATGATCAAA
Statistics
Matches: 269, Mismatches: 39, Indels: 26
0.81 0.12 0.08
Matches are distributed among these distances:
359 4 0.01
360 66 0.25
361 168 0.62
362 21 0.08
363 10 0.04
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (363 bp):
TAATATTCCAAAAATTAAAGAATAAAAGAATTAAAAAAATAAATTTTCTTACCGATCAAGTTAAA
ATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTCATTTTATCATAAAA
ACAATTGGTTCTATTCATACAAGCTTATTCTGAATAAAATAATATACATATATTAACATTCCAAA
AATTAATAAGTATAGATTTAAAAAATAAAGCTATTTACCGAACACATTCAAATAGTCATGACTAT
TTGAACTATTATCTATTTAAAATTATTATGACATTTTATTTTGTCATCAAACAATTGTTTCTATT
CAAACAAGCTTATTTGGAATAAAATAATTCTAATTAAT
Found at i:16822934 original size:14 final size:16
Alignment explanation
Indices: 16822903--16822939 Score: 60
Period size: 14 Copynumber: 2.4 Consensus size: 16
16822893 TCTAACTTTA
16822903 ATAATTATTAAGATAT
1 ATAATTATTAAGATAT
16822919 ATAATTA-TAA-ATAT
1 ATAATTATTAAGATAT
16822933 ATAATTA
1 ATAATTA
16822940 ATAGTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 3 0.14
16 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
ATAATTATTAAGATAT
Found at i:16823215 original size:15 final size:15
Alignment explanation
Indices: 16823197--16823262 Score: 57
Period size: 15 Copynumber: 4.3 Consensus size: 15
16823187 ATTATACGAT
*
16823197 TATAATTTATAATTA
1 TATAAATTATAATTA
16823212 TATAAATTATAATTA
1 TATAAATTATAATTA
16823227 CTAATCAAA-TACT--TGTA
1 -T-AT-AAATTA-TAAT-TA
16823244 TATAAATTATAATTA
1 TATAAATTATAATTA
16823259 TATA
1 TATA
16823263 TAAAGTATGT
Statistics
Matches: 42, Mismatches: 1, Indels: 16
0.71 0.02 0.27
Matches are distributed among these distances:
14 4 0.10
15 24 0.57
16 4 0.10
17 6 0.14
18 4 0.10
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (15 bp):
TATAAATTATAATTA
Found at i:16828321 original size:16 final size:16
Alignment explanation
Indices: 16828302--16828336 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
16828292 TATCATAACA
*
16828302 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
16828318 TATCCTTAACAATTGG
1 TATCCTTAACAATTGG
16828334 TAT
1 TAT
16828337 GAGCTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:16828991 original size:38 final size:38
Alignment explanation
Indices: 16828949--16829027 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
16828939 TGTTGAGTTG
* *
16828949 CATTGGATTAGGATGCATAAATTGAGGGGGAGTTTTGC
1 CATTGGATTAGGATGCACAAATTAAGGGGGAGTTTTGC
16828987 CATTGGATTAGGATGCACAAATTAAGGGGGAGTTTTGC
1 CATTGGATTAGGATGCACAAATTAAGGGGGAGTTTTGC
16829025 CAT
1 CAT
16829028 GCATTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.30
Consensus pattern (38 bp):
CATTGGATTAGGATGCACAAATTAAGGGGGAGTTTTGC
Found at i:16830947 original size:22 final size:21
Alignment explanation
Indices: 16830908--16830973 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 21
16830898 TATTAGTTAT
*
16830908 ATAAAATA-TTAATTATATTTA
1 ATAAACTATTTAA-TATATTTA
16830929 ATAAACTATTTAATCATATGTT-
1 ATAAACTATTTAAT-ATAT-TTA
* *
16830951 ATTAACTATATTAATATAATTA
1 ATAAACTAT-TTAATATATTTA
16830973 A
1 A
16830974 ACATAAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
21 10 0.27
22 20 0.54
23 7 0.19
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (21 bp):
ATAAACTATTTAATATATTTA
Found at i:16831627 original size:14 final size:14
Alignment explanation
Indices: 16831610--16831636 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
16831600 TATAATAATT
16831610 TAATATACTATTTA
1 TAATATACTATTTA
16831624 TAATATACTATTT
1 TAATATACTATTT
16831637 TGAATTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATACTATTTA
Found at i:16831852 original size:25 final size:25
Alignment explanation
Indices: 16831806--16831865 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 25
16831796 ATTTTGAAAA
16831806 TTAATT-AATATTATTATAAAT-ATAT
1 TTAATTAAAT-TTATTATAAATAAT-T
16831831 TTAATTAAATTTATTA-ATAATAATT
1 TTAATTAAATTTATTATA-AATAATT
16831856 TTAA-TAAATT
1 TTAATTAAATT
16831866 AGGCAATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
24 7 0.22
25 20 0.62
26 5 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
TTAATTAAATTTATTATAAATAATT
Found at i:16832054 original size:27 final size:27
Alignment explanation
Indices: 16832004--16832058 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
16831994 ATTTTTAATT
*
16832004 ATATTATACTTAAATTATTATTAAATA
1 ATATTATACTTAAATTAATATTAAATA
*
16832031 ATATTATTATTTAAATTAAT-TTAAATA
1 ATATTA-TACTTAAATTAATATTAAATA
16832058 A
1 A
16832059 AGATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (27 bp):
ATATTATACTTAAATTAATATTAAATA
Found at i:16832662 original size:6 final size:6
Alignment explanation
Indices: 16832646--16832745 Score: 64
Period size: 6 Copynumber: 16.2 Consensus size: 6
16832636 AAATTAGTTA
* *
16832646 AATTAAT AATTAT AATTAT AATTA- ATTTA- AATTAAT GATTA- AATTTATT
1 AATT-AT AATTAT AATTAT AATTAT AATTAT AATT-AT AATTAT AA-TTA-T
* * *
16832695 AATTAT ACAAT-T AATTAT AATTAT ATAATATT AATTAT AATGAT AATTAT
1 AATTAT A-ATTAT AATTAT AATTAT A-ATTA-T AATTAT AATTAT AATTAT
16832745 A
1 A
16832746 GTAAATATTA
Statistics
Matches: 74, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
5 10 0.14
6 42 0.57
7 18 0.24
8 4 0.05
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (6 bp):
AATTAT
Found at i:16833976 original size:18 final size:18
Alignment explanation
Indices: 16833947--16833992 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
16833937 TTATTAGTTA
16833947 AATTACAAATTT-ACAAATT
1 AATTA-AAATTTCA-AAATT
16833966 AATTAAAATTTCAAAATT
1 AATTAAAATTTCAAAATT
16833984 AA-TAAAATT
1 AATTAAAATT
16833993 AATAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.27
18 13 0.50
19 6 0.23
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTAAAATTTCAAAATT
Found at i:16835214 original size:17 final size:16
Alignment explanation
Indices: 16835194--16835248 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
16835184 TTCAAACAAT
16835194 ATAATTTATCAATTATA
1 ATAATTTAT-AATTATA
* * *
16835211 ATAATTATTTATTTATT
1 ATAATT-TATAATTATA
16835228 ATAATATTATAATTATA
1 ATAAT-TTATAATTATA
16835245 ATAA
1 ATAA
16835249 ATATATTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 27 0.90
18 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
ATAATTTATAATTATA
Found at i:16835222 original size:20 final size:19
Alignment explanation
Indices: 16835191--16835237 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
16835181 TTGTTCAAAC
*
16835191 AATATAATTTATCAATTAT
1 AATATTATTTATCAATTAT
**
16835210 AATAATTATTTATTTATTAT
1 AAT-ATTATTTATCAATTAT
16835230 AATATTAT
1 AATATTAT
16835238 AATTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
AATATTATTTATCAATTAT
Found at i:16835370 original size:18 final size:19
Alignment explanation
Indices: 16835330--16835399 Score: 65
Period size: 18 Copynumber: 3.7 Consensus size: 19
16835320 GATAATAACT
*
16835330 AATT-TTAAATATTTAATA
1 AATTATTAATTATTTAATA
16835348 AATTATTAATTATTTAAT-
1 AATTATTAATTATTTAATA
* *
16835366 GATTATTAATTA-ATAATTA
1 AATTATTAATTATTTAA-TA
*
16835385 AATTAATTGATTATT
1 AATT-ATTAATTATT
16835400 ATACACTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
17 3 0.07
18 16 0.39
19 15 0.37
20 7 0.17
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
AATTATTAATTATTTAATA
Found at i:16835927 original size:51 final size:48
Alignment explanation
Indices: 16835866--16835985 Score: 125
Period size: 51 Copynumber: 2.4 Consensus size: 48
16835856 TAAACAAATT
* *
16835866 AAAAA-ATTAATAATTTTTTAAATTATTAAATATAATTTATTTAATATTAC
1 AAAAATATTAATAATTTTTGAAATTATT-AATA-AAGTTA-TTAATATTAC
* * *
16835916 AAAACTATTAATAATTGTAATAGAAATTATTAATAAAGTTATTAATATTAT
1 AAAAATATTAATAATT-T--TTGAAATTATTAATAAAGTTATTAATATTAC
*
16835967 AAAAATATTAATTATTTTT
1 AAAAATATTAATAATTTTT
16835986 AGTTTAATAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
48 1 0.02
50 5 0.09
51 33 0.57
52 6 0.10
53 4 0.07
54 9 0.16
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.46
Consensus pattern (48 bp):
AAAAATATTAATAATTTTTGAAATTATTAATAAAGTTATTAATATTAC
Found at i:16836130 original size:29 final size:29
Alignment explanation
Indices: 16836098--16836162 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
16836088 CTAATAATTT
16836098 ATATAATT-TTAATTTTAATAAAATTATTA
1 ATAT-ATTATTAATTTTAATAAAATTATTA
* *
16836127 ATAT-TTAATTAATTTTAATATAATTGTTA
1 ATATATT-ATTAATTTTAATAAAATTATTA
*
16836156 TTATATT
1 ATATATT
16836163 TCATATTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 2 0.07
29 26 0.87
30 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
ATATATTATTAATTTTAATAAAATTATTA
Found at i:16836488 original size:22 final size:21
Alignment explanation
Indices: 16836462--16836515 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
16836452 TAATAATTAT
*
16836462 TAATATAAATAGTAAATTAAAA
1 TAATATAAATA-TAAACTAAAA
* *
16836484 TAATATATATTATAAACTAACA
1 TAATATA-AATATAAACTAAAA
16836506 TAAT-TAAATA
1 TAATATAAATA
16836516 AATAGATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 2 0.07
22 19 0.70
23 3 0.11
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (21 bp):
TAATATAAATATAAACTAAAA
Found at i:16836565 original size:21 final size:20
Alignment explanation
Indices: 16836521--16836562 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 20
16836511 AAATAAATAG
16836521 ATAATAATTTATTATTATTTT
1 ATAATAATTTATTATTA-TTT
16836542 ATAATAATATTATTAATTATT
1 ATAATAAT-TTATT-ATTATT
16836563 ATATCATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATAATTTATTATTATTT
Found at i:16836870 original size:7 final size:7
Alignment explanation
Indices: 16836858--16836883 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
16836848 TTAATTTAAT
16836858 TATATAG
1 TATATAG
16836865 TATATAG
1 TATATAG
16836872 TATATAG
1 TATATAG
16836879 TATAT
1 TATAT
16836884 TTTTATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (7 bp):
TATATAG
Found at i:16837026 original size:15 final size:16
Alignment explanation
Indices: 16837006--16837045 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
16836996 ATTATTTTTT
16837006 ATTAATTAAATATT-A
1 ATTAATTAAATATTAA
16837021 ATTAATT-AATATTAA
1 ATTAATTAAATATTAA
16837036 ATTGAATTAA
1 ATT-AATTAA
16837046 CAAAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 11 0.50
16 4 0.18
17 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
ATTAATTAAATATTAA
Found at i:16843113 original size:19 final size:18
Alignment explanation
Indices: 16843085--16843120 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
16843075 ATATATGTTT
*
16843085 GATTACTTACATGTGCTTA
1 GATTAATTACAT-TGCTTA
16843104 GATTAATTACATTGCTT
1 GATTAATTACATTGCTT
16843121 TGCATTGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
GATTAATTACATTGCTTA
Found at i:16844258 original size:38 final size:38
Alignment explanation
Indices: 16844216--16844292 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 38
16844206 TTGAGTTGTG
* *
16844216 TTGGATTAGGATGCATAAATTGAGGG-GTTGTTTTGCCA
1 TTGGATTAGGATGCACAAATTGAGGGAG-AGTTTTGCCA
16844254 TTGGATTAGGATGCACAAATTGAGGGAGAGTTTTGCCA
1 TTGGATTAGGATGCACAAATTGAGGGAGAGTTTTGCCA
16844292 T
1 T
16844293 GCATTGTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 35 0.97
39 1 0.03
ACGTcount: A:0.26, C:0.09, G:0.31, T:0.34
Consensus pattern (38 bp):
TTGGATTAGGATGCACAAATTGAGGGAGAGTTTTGCCA
Found at i:16846093 original size:21 final size:21
Alignment explanation
Indices: 16846059--16846126 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
16846049 AAACCTATGT
*
16846059 ATAATAATTATTATATTAATA
1 ATAATAATTTTTATATTAATA
*
16846080 ATAATTATTTTTATATATAATTA
1 ATAATAATTTTTATAT-TAA-TA
* *
16846103 ATAATAATATTTAT-TTAATT
1 ATAATAATTTTTATATTAATA
16846123 ATAA
1 ATAA
16846127 ATATTACTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 5 0.12
21 17 0.43
22 4 0.10
23 14 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATAATAATTTTTATATTAATA
Found at i:16846109 original size:26 final size:23
Alignment explanation
Indices: 16846066--16846114 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
16846056 TGTATAATAA
16846066 TTATTATATTAATAATAATTATTT
1 TTATTATATTAATAATAA-TATTT
16846090 TTATATATAATTAATAATAATATTT
1 TTAT-TAT-ATTAATAATAATATTT
16846115 ATTTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.17
25 8 0.35
26 11 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTATTATATTAATAATAATATTT
Found at i:16846125 original size:29 final size:30
Alignment explanation
Indices: 16846063--16846174 Score: 103
Period size: 32 Copynumber: 3.8 Consensus size: 30
16846053 CTATGTATAA
16846063 TAATTAT-TATATTAATAATAATTATT-TT
1 TAATTATATATATTAATAATAATTATTATT
16846091 T-A-TATATA-ATTAATAATAA-TATTTATT
1 TAATTATATATATTAATAATAATTA-TTATT
* *
16846118 TAATTATAAATATTACTATAATAATTATTAAT
1 TAATTATATATATTA--ATAATAATTATTATT
16846150 TAATTATAAGTATACTT-ATAATAAT
1 TAATTAT-A-TATA-TTAATAATAAT
16846175 ATAAAAATAT
Statistics
Matches: 69, Mismatches: 3, Indels: 20
0.75 0.03 0.22
Matches are distributed among these distances:
25 2 0.03
26 16 0.23
27 6 0.09
28 2 0.03
29 5 0.07
30 4 0.06
32 26 0.38
33 3 0.04
34 3 0.04
35 2 0.03
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (30 bp):
TAATTATATATATTAATAATAATTATTATT
Found at i:16846207 original size:76 final size:75
Alignment explanation
Indices: 16846058--16846235 Score: 177
Period size: 76 Copynumber: 2.3 Consensus size: 75
16846048 TAAACCTATG
* ** *
16846058 TATAATAATTATTATATTAATAATAATTATTTTTATATATAATTAATAATAATATTTATTTAATT
1 TATAATAATTATTATATTAATAATAAGTATACTTATATATAATTAAAAATAATATTTATTTAATT
16846123 ATAAATATTA
66 ATAAATATTA
* *
16846133 CTATAATAATTATTA-ATTAATTATAAGTATACTTATA-ATAATATAAAAATATTAATATTAGTT
1 -TATAATAATTATTATATTAATAATAAGTATACTTATATATAAT-TAAAAATAAT-AT-TTA-TT
*
16846196 T-ATTA-ATATATTA
61 TAATTATAAATATTA
* *
16846209 AATTAATAATTATT-TAGTAACTAATAA
1 TA-TAATAATTATTATATTAA-TAATAA
16846236 AATTATAACT
Statistics
Matches: 85, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
74 5 0.06
75 27 0.32
76 38 0.45
77 12 0.14
78 3 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (75 bp):
TATAATAATTATTATATTAATAATAAGTATACTTATATATAATTAAAAATAATATTTATTTAATT
ATAAATATTA
Found at i:16846238 original size:27 final size:27
Alignment explanation
Indices: 16846171--16846249 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 27
16846161 ATACTTATAA
* *
16846171 TAATATAAAAATATTAAT-ATTAGTTTAT
1 TAATATATAAA-ATTAATAATTA-TTTAG
*
16846199 TAATATATTAAATTAATAATTATTTAG
1 TAATATATAAAATTAATAATTATTTAG
16846226 TAACTA-ATAAAATT-ATAACTTATT
1 TAA-TATATAAAATTAATAA-TTATT
16846250 ATAATTATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
26 4 0.09
27 25 0.57
28 15 0.34
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (27 bp):
TAATATATAAAATTAATAATTATTTAG
Found at i:16846331 original size:16 final size:17
Alignment explanation
Indices: 16846302--16846409 Score: 58
Period size: 17 Copynumber: 6.1 Consensus size: 17
16846292 AATATTGTAA
16846302 TATTATATAAATTAAAT
1 TATTATATAAATTAAAT
* *
16846319 TATT-TATACATTATAT
1 TATTATATAAATTAAAT
* * *
16846335 TAGTATAAAAATTATAT
1 TATTATATAAATTAAAT
* * *
16846352 TATACAAATAATATTTAATT
1 TAT-TATATAA-A-TTAAAT
16846372 TATTATAATAAAATTATAAT
1 TATTAT-AT-AAATTA-AAT
*
16846392 TA-TAGTATTAATTAAAT
1 TATTA-TATAAATTAAAT
16846409 T
1 T
16846410 TAACAAACTT
Statistics
Matches: 68, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
16 13 0.19
17 20 0.29
18 9 0.13
19 9 0.13
20 15 0.22
21 2 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TATTATATAAATTAAAT
Found at i:16846701 original size:15 final size:16
Alignment explanation
Indices: 16846673--16846704 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
16846663 TATTATAAGC
16846673 AATTATTATAATAATT
1 AATTATTATAATAATT
16846689 AATTATT-TAATAATT
1 AATTATTATAATAATT
16846704 A
1 A
16846705 CTTTATACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTATTATAATAATT
Found at i:16847143 original size:180 final size:180
Alignment explanation
Indices: 16846784--16847209 Score: 504
Period size: 180 Copynumber: 2.4 Consensus size: 180
16846774 TTATTTAATT
* * * * *
16846784 TTATTTAGAATAAAATAATACTAATTTAATAATATTTTGAAACTTAATAACCAAA-AAAATTAAA
1 TTATTTAGAATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAA-GAAAGAGATTTAAA
* * * *
16846848 AAATAAATCTAATTGTCGAACCAGTTCAAATAGTTAAGACTCTATGAATGATTATCTATTTCAAA
65 AAATAAATCTAATTGTCGAAACAATTCAAATAGTTAAGAATCTATGAATAATTATCTATTTCAAA
* * * *
16846913 TCATTATGACCTTTTCTTTTAACGTAAAACAATTGTTTTATTCGTACAAGC
130 TCATTATGACCTTTTCGTTTAACATAAAACAATTATTTTATTCATACAAGC
* * *
16846964 TTATTTGGATTAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAA
1 TTATTTAGAATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGAAAGAGATTTAAAA
* *
16847029 AATAAAT-TTATT-TACTAAACAATTCAAATAGTTAA-AAT-TATTAGAATAATTATCTATTTCA
66 AATAAATCTAATTGT-CGAAACAATTCAAATAGTTAAGAATCTA-T-GAATAATTATCTATTTCA
* * * *
16847090 TATCATTTTGATCTTTT-GTTTAGTCATAAAACAATTATTTTAGTTCATACAAGC
128 AATCATTATGACCTTTTCGTTTA-ACATAAAACAATTATTTTA-TTCATACAAGC
* * * * * *
16847144 TTATTTAGAATAAATTAATACTAATTTATTAACATTTGAAAAATTAATATGAAAGAGATTCAAAA
1 TTATTTAGAATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGAAAGAGATTTAAAA
16847209 A
66 A
16847210 TATTTATTTT
Statistics
Matches: 209, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
177 2 0.01
178 8 0.04
179 71 0.34
180 128 0.61
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (180 bp):
TTATTTAGAATAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGAAAGAGATTTAAAA
AATAAATCTAATTGTCGAAACAATTCAAATAGTTAAGAATCTATGAATAATTATCTATTTCAAAT
CATTATGACCTTTTCGTTTAACATAAAACAATTATTTTATTCATACAAGC
Found at i:16847247 original size:15 final size:15
Alignment explanation
Indices: 16847227--16847259 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
16847217 TTTATCTTTG
16847227 ATTAAT-TTTTACAAT
1 ATTAATATTTTA-AAT
16847242 ATTAATATTTTAAAT
1 ATTAATATTTTAAAT
16847257 ATT
1 ATT
16847260 TTAAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTAATATTTTAAAT
Found at i:16848629 original size:29 final size:29
Alignment explanation
Indices: 16848568--16848629 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
16848558 AATAAATTCA
*
16848568 TAATT-TTATAATTATAATAATATTAAAT
1 TAATTATTATAATTATAATAATAATAAAT
*
16848596 T-ATTATTATAACTTATAATAA-AATAACT
1 TAATTATTATAA-TTATAATAATAATAAAT
16848624 TAATTA
1 TAATTA
16848630 CTATTAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 3 0.10
28 13 0.45
29 13 0.45
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TAATTATTATAATTATAATAATAATAAAT
Found at i:16848842 original size:25 final size:26
Alignment explanation
Indices: 16848804--16848862 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
16848794 AATTAAATTG
* *
16848804 TATAATAAATAATTATTATATA-ATA-
1 TATAATAAACAATTATAAT-TACATAT
*
16848829 TATAATATACAATTATAATTACATAT
1 TATAATAAACAATTATAATTACATAT
16848855 TATAATAA
1 TATAATAA
16848863 CTAATATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.07
25 19 0.68
26 7 0.25
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.42
Consensus pattern (26 bp):
TATAATAAACAATTATAATTACATAT
Found at i:16848847 original size:13 final size:14
Alignment explanation
Indices: 16848815--16848861 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
16848805 ATAATAAATA
*
16848815 ATTATTATATA-AT
1 ATTATAATATACAT
16848828 A-TATAATATACA-
1 ATTATAATATACAT
16848840 ATTATAAT-TACAT
1 ATTATAATATACAT
16848853 ATTATAATA
1 ATTATAATA
16848862 ACTAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATATACAT
Found at i:16848987 original size:24 final size:27
Alignment explanation
Indices: 16848960--16849021 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 27
16848950 CAATAAATAG
16848960 TAATAATATTAT-AATTAATTGA-A-A
1 TAATAATATTATAAATTAATTGATATA
* *
16848984 TAATCATA-TATAAATTAATTTATATTA
1 TAATAATATTATAAATTAATTGATA-TA
16849011 TAATAATATTA
1 TAATAATATTA
16849022 ACTAATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 3 0.10
24 16 0.53
25 1 0.03
27 8 0.27
28 2 0.07
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (27 bp):
TAATAATATTATAAATTAATTGATATA
Found at i:16849029 original size:21 final size:20
Alignment explanation
Indices: 16848875--16849029 Score: 57
Period size: 19 Copynumber: 8.0 Consensus size: 20
16848865 AATATGATTC
*
16848875 ATAA-AATATTAATAATAAT
1 ATAATAATATTAATAATATT
*
16848894 AT-TTAAT-TATAATAAT-TT
1 ATAATAATAT-TAATAATATT
* * *
16848912 ATTAA-ATTATTACATGATACT
1 A-TAATAATATTA-ATAATATT
16848933 AT-ATAA-ATTAAT--TATT
1 ATAATAATATTAATAATATT
* *
16848949 ACAATAAATAGTAATAATATT
1 ATAAT-AATATTAATAATATT
*
16848970 ATAATTAAT-TGAAATAATCA-T
1 ATAA-TAATAT-TAATAAT-ATT
*
16848991 AT-ATAA-ATTAATTTATATT
1 ATAATAATATTAA-TAATATT
16849010 ATAATAATATTAACTAATAT
1 ATAATAATATTAA-TAATAT
16849030 ATGATTATTA
Statistics
Matches: 98, Mismatches: 17, Indels: 40
0.63 0.11 0.26
Matches are distributed among these distances:
16 4 0.04
17 2 0.02
18 10 0.10
19 37 0.38
20 12 0.12
21 31 0.32
22 2 0.02
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATAATATTAATAATATT
Found at i:16849973 original size:13 final size:13
Alignment explanation
Indices: 16849955--16849979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16849945 TAATTTATTT
16849955 AATAATTAGATTA
1 AATAATTAGATTA
16849968 AATAATTAGATT
1 AATAATTAGATT
16849980 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:16850138 original size:22 final size:23
Alignment explanation
Indices: 16850110--16850155 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
16850100 TTTAAATATT
* *
16850110 TATATTATATTTTAATTA-ATTA
1 TATATTATAATTAAATTAGATTA
16850132 TATATTATAATTAAATTAGATTA
1 TATATTATAATTAAATTAGATTA
16850155 T
1 T
16850156 TTTTTATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TATATTATAATTAAATTAGATTA
Found at i:16850210 original size:30 final size:32
Alignment explanation
Indices: 16850176--16850253 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 32
16850166 AACAATTATT
*
16850176 TTAATTTTAAATTAATAAGTAAA-A-ATTTAA
1 TTAATTTTAAATTAATAAATAAATAGATTTAA
16850206 TTAATTTT-AATTATATAAATAAATTAGATTTAA
1 TTAATTTTAAATTA-ATAAATAAA-TAGATTTAA
*
16850239 -T-ATTTAAAATTAATA
1 TTAATTTTAAATTAATA
16850254 TATATTATAG
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
29 5 0.12
30 16 0.39
31 7 0.17
32 7 0.17
33 6 0.15
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (32 bp):
TTAATTTTAAATTAATAAATAAATAGATTTAA
Found at i:16851258 original size:180 final size:178
Alignment explanation
Indices: 16850912--16851591 Score: 637
Period size: 181 Copynumber: 3.8 Consensus size: 178
16850902 TTGATCGATA
* * *
16850912 AGAAACAATTGTTTTACAACAAAA-AAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATG
1 AGAAACAATTGTTTTATAACAAAACAAAA-GTCATAACGATTTGAAATAGATAATTGTTCAAAT-
* * ** ** * *
16850976 GA-CATGACTATTTGAACTGGTTCGATAAACTACTTAATTTTTTAAATCTTTAACTTATTAATTT
64 AATCATAACTATTTGAACT-AATCGATAAAAAATTTAA-TTTTTAAATCTTTTACTTATTAATTT
* *
16851040 TTAGAATGTTAA-TACATTAGTATTATTTTATTCCAAATAAACTTGTATGAAT
127 TTAGAATATTAATTA-ATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
* *
16851092 AGAAACAATTGTTTTATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTGTTCAAACA
1 AGAAACAATTGTTTTATAACAAAACAAAAG-TCATAACGATTTGAAATAGATAATTGTTCAAATA
* *
16851157 ATCATAACTATTTGAACTCACTCGGTAAACAAATTTAATTTTTAAATCTTTTACTTATTAA-TTT
65 ATCATAACTATTTGAACT-AATCGATAAA-AAATTTAATTTTTAAATCTTTTACTTATTAATTTT
* * *
16851221 TAGAATATTAATTAATTAGAATTATTTTATTCCAAATAAGCTTGTTTTGAAA
128 TAGAATATTAATTAATTAGTATTATTTTATTCCAAATAAGCTTG-TATGAAT
* * * * * * *
16851273 AGAAACAATTGGTTTGTGACAAAACAAATTGTCATAATGATTTGACATAGATAATTATTCAAATA
1 AGAAACAATTGTTTTATAACAAAACAAA-AGTCATAACGATTTGAAATAGATAATTGTTCAAATA
* * * * * *
16851338 GTCATAACTATTTGAA-T-GT-GTTCAAAAAATAGCTTTATTTTCTAAA-ATTATACTTATTAA-
65 ATCATAACTATTTGAACTAATCGAT-AAAAAAT---TTAATTTT-TAAATCTTTTACTTATTAAT
* * * * *
16851398 TTTTAGGAATATTAATAAATTTA-TATTATTTTACTCAAAATACGCTTGCATGAAT
125 TTTTA-GAATATTAATTAA-TTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
* * * * * * * *
16851453 AGAACCAATTATTTTATAACAAAACAAATGTCATAATGTTTTGAAATAGATAATTGTTTAGATAG
1 AGAAACAATTGTTTTATAACAAAACAAAAGTCATAACGATTTGAAATAGATAATTGTTCAAATAA
* * *
16851518 TCATAACTATTTCAACTTAATCGATAAGAAAATTTATTTTTTTAAT-TTGTTACTCT-TTAATTT
66 TCATAACTATTTGAAC-TAATCGATAA-AAAATTTAATTTTTAAATCTT-TTACT-TATTAATTT
*
16851581 TTGGAATATTA
127 TTAGAATATTA
16851592 TTTTAAATTT
Statistics
Matches: 416, Mismatches: 61, Indels: 46
0.80 0.12 0.09
Matches are distributed among these distances:
177 6 0.01
178 4 0.01
179 51 0.12
180 140 0.34
181 196 0.47
182 12 0.03
183 7 0.02
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (178 bp):
AGAAACAATTGTTTTATAACAAAACAAAAGTCATAACGATTTGAAATAGATAATTGTTCAAATAA
TCATAACTATTTGAACTAATCGATAAAAAATTTAATTTTTAAATCTTTTACTTATTAATTTTTAG
AATATTAATTAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
Found at i:16851590 original size:361 final size:361
Alignment explanation
Indices: 16850911--16851591 Score: 826
Period size: 361 Copynumber: 1.9 Consensus size: 361
16850901 CTTGATCGAT
* *
16850911 AAGAAACAATTGTTTTACAACAAAAAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATG
1 AAGAAACAATTGGTTTACAACAAAAAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATA
* * * * *
16850976 GACATGACTATTTGAACTGGTTCGATAAACTACTTAATTTTTTAAATCTTTAACTTATTAATTTT
66 GACATAACTATTTGAACTGGTTCGAAAAAATACTTAATTTTTAAAATCTATAACTTATTAATTTT
* * * * * *
16851041 TAGAATGTTAATACATTAGTATTATTTTATTCCAAATAAACTTGTATGAATAGAAACAATTGTTT
131 TAGAATATTAATAAATTAGTATTATTTTACTCAAAATAAACTTGCATGAATAGAAACAATTATTT
*
16851106 TATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTGTTCAAACAATCATAACTATTTG
196 TATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTGTTCAAACAATCATAACTATTTC
* *
16851171 AACTCACTCGGTAAACAAATTTAATTTTTAAATCTTTTACTTATTAATTTTAGAATATTAATTAA
261 AACTCAATCGATAAACAAATTTAATTTTTAAATCTTTTACTTATTAATTTTAGAATATTAATTAA
16851236 TTAGAATTATTTTATTCCAAATAAGCTTGTTTTGAA
326 TTAGAATTATTTTATTCCAAATAAGCTTGTTTTGAA
*** * ** *
16851272 AAGAAACAATTGGTTTGTGACAAAACAAATTGTCATAATGATTTGACATAGATAATTA-TTCAAA
1 AAGAAACAATTGGTTTACAACAAAA-AAAATGTCATAACAATTTGAAATAGATAA-TAGTTCAAA
* *
16851336 TAGTCATAACTATTTGAA-TGTGTTC-AAAAAATAGCTTTATTTTCTAAAAT-TAT-ACTTATTA
64 TAGACATAACTATTTGAACTG-GTTCGAAAAAATA-CTTAATTTT-TAAAATCTATAACTTATTA
** *
16851397 A-TTTTAGGAATATTAATAAATTTA-TATTATTTTACTCAAAATACGCTTGCATGAATAGAACCA
126 ATTTTTA-GAATATTAATAAA-TTAGTATTATTTTACTCAAAATAAACTTGCATGAATAGAAACA
* * * * * * * *
16851460 ATTATTTTATAACAAAACAAATG-TCATAATGTTTTGAAATAGATAATTGTTTAGATAGTCATAA
189 ATTATTTTATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTGTTCAAACAATCATAA
* * * *
16851524 CTATTTCAACTTAATCGATAAGA-AAATTTATTTTTTTAAT-TTGTTACTCT-TTAATTTTTGGA
254 CTATTTCAACTCAATCGATAA-ACAAATTTAATTTTTAAATCTT-TTACT-TATTAA-TTTTAGA
16851586 ATATTA
315 ATATTA
16851592 TTTTAAATTT
Statistics
Matches: 269, Mismatches: 40, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
359 2 0.01
360 80 0.30
361 117 0.43
362 63 0.23
363 7 0.03
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (361 bp):
AAGAAACAATTGGTTTACAACAAAAAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATA
GACATAACTATTTGAACTGGTTCGAAAAAATACTTAATTTTTAAAATCTATAACTTATTAATTTT
TAGAATATTAATAAATTAGTATTATTTTACTCAAAATAAACTTGCATGAATAGAAACAATTATTT
TATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTGTTCAAACAATCATAACTATTTC
AACTCAATCGATAAACAAATTTAATTTTTAAATCTTTTACTTATTAATTTTAGAATATTAATTAA
TTAGAATTATTTTATTCCAAATAAGCTTGTTTTGAA
Done.