Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 83 of 113
Found at i:17353445 original size:388 final size:380
Alignment explanation
Indices: 17352647--17354014 Score: 1064
Period size: 388 Copynumber: 3.5 Consensus size: 380
17352637 GAAATTATGC
* * * * * * *
17352647 AAATACC-CATTCTCTTATAATTATTTTCTAAATAATCGC-TAATGAAATTACT-CAAATACCAT
1 AAATACCACA-TCTTTTATAATTATTTACTAAATAATCTCTTAA-AAAATTA-TGAAAAT-GCTT
* * * * *** *
17352709 TTCCATTATATGATAAGAAGTTAATATATGTCCAAATTGACTATTACGCCCTTATATCATAATTA
62 TTCCATTATATGATAAGAAATTAACATGT-TCCAAATTAACTATTATATCCTCATATCATAATTA
* * * * * * * *
17352774 -AAAAAGTACCCCTCTATTATAGTTATTTACTAAATAATCCCTTTTGAAATTTCGAAAATACCCT
126 CGAAAA-TACCCCTCTCTTATAATTATTTACTAAATAATTCC-TATAAAATTACAAAAATACCCT
* * *** * * *
17352838 ATCCATTACATGATACCA-AATTT-ACATGTGGTTAAATGGATTATTATGCCCCCATACCATAAT
189 -TCCA-TATATGATA--AGAATTTGACACGTGACCAAATGGACTATTATG-CCCTATAACATAAT
* * *
17352901 TACGATAATACCTCTTCTCTTACAATTATTTACTAAAAATCTTGCA-A-GAAATTACCAAAATAC
249 TAC-AAAATACCTCTTCTCTTATAATTATTTACT--AAATATTGCACATGAAATTACCAAAATA-
* * * * *
17352964 CCATTCT-ATTATATGATAAGAAATTGACATGTGACCAAATTGACTATTATTCTCTCATAACATC
310 CCATTTTCATTATATGATAAAAAATTGACATGTGGCCAAATTGACTATTATTCTTTCAT-ACATA
**
17353028 ATTATGA
374 ATTACAA
* * * * ** *
17353035 AAATATC-C-TTTTCTTGTAATTATTTACTAATTAATCTCTTACGAAATTACGAAAATGCTCTTT
1 AAATACCACATCTT-TTATAATTATTTACTAAATAATCTCTTAAAAAATTATGAAAATGCT-TTT
** * ** *
17353098 CCATTATATGATAAGAAATTAACATGTTACCAAATGGACTATTATATCCTCGTGGCATAATTATG
64 CCATTATATGATAAGAAATTAACATGTT-CCAAATTAACTATTATATCCTCATATCATAATTACG
*
17353163 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATTACCTATCAAATTACAAAAATACCCTTG
128 AAAATACCCC-TCTCTTATAATTATTTACTAAATAATT-CCTATAAAATTACAAAAATACCCTT-
* * *
17353228 CCATCATGTGATAAGCATTTGACACGTGACCAAATGGACTATTATACACCTATAACATAATTACA
190 CCAT-ATATGATAAGAATTTGACACGTGACCAAATGGACTATTATGC-CCTATAACATAATTACA
* * *
17353293 AAA-ATGCTCTTCTCTTATAATTATTTAGTAAATAGTTGCACATGAAATTACCAAGATA-CATTT
253 AAATA-CCTCTTCTCTTATAATTATTTACTAAATA-TTGCACATGAAATTACCAAAATACCA-TT
* * *
17353356 TTCATTATATGATAAAAAATTGACATATGGCCAAA-TGAACTATTATTCTTTCATACTGTGATTA
315 TTCATTATATGATAAAAAATTGACATGTGGCCAAATTG-ACTATTATTCTTTCATAC-ATAATTA
17353420 CAA
378 CAA
*
17353423 AAATA-CACATCTTTTATAATTATTTACTAAATAATCTCCTAAAAAATTATTG-AAATGACATTT
1 AAATACCACATCTTTTATAATTATTTACTAAATAATCTCTTAAAAAATTA-TGAAAATG-C-TTT
* * * * * * *
17353486 T-CATTTTATGATAAAAAATTGACATATGGCCAAATTAACTATTAT-GCCTTTATATCATAATTA
63 TCCATTATATGATAAGAAATTAACATGT-TCCAAATTAACTATTATATCC-TCATATCATAATTA
* * * * * * * *
17353549 CAAAAATA----TCACTTATCATTATTTATTGAAT-ACTCTCTAATGAAATTACCAAAATACCCT
126 CGAAAATACCCCTCTCTTATAATTATTTACTAAATAATTC-CT-ATAAAATTACAAAAATACCC-
* ** * *
17353609 TTCCAATATAAGATAAGAATTTGACGTGTGGCCAAATGGACTATTATGCCTTCAT-ACTATAATT
188 TTCC-ATATATGATAAGAATTTGACACGTGACCAAATGGACTATTATGCCCT-ATAAC-ATAATT
* * * *
17353673 ACAAAATACCCCTTGTCTTATAATTATTTTCTAAATAAT-CAACAATGAAATTACCAAAATACCA
250 ACAAAATACCTCTTCTCTTATAATTATTTACTAAATATTGC-AC-ATGAAATTACCAAAATACCA
* * ** * * *
17353737 TCTCCAACATATGATAAGAAAA-TGACATGTGGCCAAATTGACTGTTATGCCTTCATACCATAAT
313 TTTTCATTATATGATAA-AAAATTGACATGTGGCCAAATTGACTATTATTCTTTCATA-CATAAT
17353801 TACAA
376 TACAA
* * * * *
17353806 AAATACCACATCTCTTATAATTATTTACTAAGTAATC-CTATATAAAATTATTAAAATACTTTTC
1 AAATACCACATCTTTTATAATTATTTACTAAATAATCTCT-TAAAAAATTATGAAAATGCTTTTC
* * * * *
17353870 CATTATATGATAAGAAGTTAACGTGTGTCTAAATTCACTATTACGAT-CTCATATCATAATTACG
65 CATTATATGATAAGAAATTAACATGT-TCCAAATTAACTATTA-TATCCTCATATCATAATTACG
* * * * **
17353934 AAAGTACCCCCTCTTTTATAATCATTTACTAAATAATGTCCTCTAAAATTATGAAAATACCCTAT
128 AAAATA-CCCCTCTCTTATAATTATTTACTAAATAAT-TCCTATAAAATTACAAAAATACCCT-T
17353999 CCATTATATGATAAGA
190 CCA-TATATGATAAGA
17354015 TATTGAGATG
Statistics
Matches: 782, Mismatches: 142, Indels: 112
0.75 0.14 0.11
Matches are distributed among these distances:
381 2 0.00
382 15 0.02
383 238 0.30
384 57 0.07
385 4 0.01
386 13 0.02
387 135 0.17
388 302 0.39
389 13 0.02
390 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.36
Consensus pattern (380 bp):
AAATACCACATCTTTTATAATTATTTACTAAATAATCTCTTAAAAAATTATGAAAATGCTTTTCC
ATTATATGATAAGAAATTAACATGTTCCAAATTAACTATTATATCCTCATATCATAATTACGAAA
ATACCCCTCTCTTATAATTATTTACTAAATAATTCCTATAAAATTACAAAAATACCCTTCCATAT
ATGATAAGAATTTGACACGTGACCAAATGGACTATTATGCCCTATAACATAATTACAAAATACCT
CTTCTCTTATAATTATTTACTAAATATTGCACATGAAATTACCAAAATACCATTTTCATTATATG
ATAAAAAATTGACATGTGGCCAAATTGACTATTATTCTTTCATACATAATTACAA
Found at i:17354354 original size:301 final size:300
Alignment explanation
Indices: 17353762--17354361 Score: 687
Period size: 301 Copynumber: 2.0 Consensus size: 300
17353752 AAGAAAATGA
* * * * *
17353762 CATGTGGCCAAATTGACTGTTATGCCTTCATACCATAATTACAAAAATACCACATCTCTTATAAT
1 CATGTGGCCAAATTGACTATTATGCCCTCATACAATAATTACAAAAATA-CACATCTCTTACAAA
* **
17353827 TATTTACTAAGTAATCCTATATAAAATTATTAAAATACTTTTCCATTATATGATAAGAAGTTAAC
65 TATTTACTAAATAATCCTATATAAAATTACCAAAATACTTTTCCATTATATGATAAGAAGTTAAC
* * * * *
17353892 GTGTGTCTAAATTCACTATTACGATCTCATATCATAATTACGAAAGTACCCCCTCTTTTATAATC
130 GTGTGTCTAAATTCACTACTACGATCTCATACCATAATTACAAAAGTACACCCTCTTTGATAATC
* * *
17353957 ATTTACTAAATAATGTCCTCTAAAATTATGAAAATACCCTATCCATTATATGATAAGATATTGAG
195 ATTTACTAAATAATGTCCTCTAAAATTATGAAAATACCATATCCAATATATGATAAGATATTGAC
* *
17354022 ATGTAGCCTAATGGACGACTATGCTCTCATACCATAATTGG
260 ATGTAGCCTAACGGACGACTATGCCCTCATACCATAATTGG
*
17354063 CATGTGGCCAAATTGACTATTATGCCCTCATACAATAATTACGAAAATA-ATCATTCTCTTACAA
1 CATGTGGCCAAATTGACTATTATGCCCTCATACAATAATTACAAAAATACA-CA-TCTCTTACAA
* * *
17354127 ATATTTACTAAATAAT-CTTTAATGAAATTACCAAGATACTCTTTCCATTATATGATAAGCAA-T
64 ATATTTACTAAATAATCCTAT-ATAAAATTACCAAAATACT-TTTCCATTATATGATAAG-AAGT
* * * * ** ** *
17354190 TGACTTGTGGTC-AAGTTGACTACTA-TTTGCTCATACCATAATTACAAAAGTACACTTTGTTTG
126 TAACGTGT-GTCTAAATTCACTACTACGAT-CTCATACCATAATTACAAAAGTACACCCTCTTTG
* * * * * *
17354253 ATGATTATTTAGTAAATAAT-TCCTCATAAAATTGCT-AGAATACCATATCTAATATATGATAAG
189 ATAATCATTTACTAAATAATGTCCTC-TAAAATT-ATGAAAATACCATATCCAATATATGATAAG
* *
17354316 A-ATTGACATGTAG-CTAAACGGACTATTATGCCCTCATACCATAATT
252 ATATTGACATGTAGCCT-AACGGACGACTATGCCCTCATACCATAATT
17354362 ACGAAATTGT
Statistics
Matches: 250, Mismatches: 39, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
299 1 0.00
300 7 0.03
301 126 0.50
302 110 0.44
303 6 0.02
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (300 bp):
CATGTGGCCAAATTGACTATTATGCCCTCATACAATAATTACAAAAATACACATCTCTTACAAAT
ATTTACTAAATAATCCTATATAAAATTACCAAAATACTTTTCCATTATATGATAAGAAGTTAACG
TGTGTCTAAATTCACTACTACGATCTCATACCATAATTACAAAAGTACACCCTCTTTGATAATCA
TTTACTAAATAATGTCCTCTAAAATTATGAAAATACCATATCCAATATATGATAAGATATTGACA
TGTAGCCTAACGGACGACTATGCCCTCATACCATAATTGG
Found at i:17354479 original size:129 final size:131
Alignment explanation
Indices: 17354057--17354570 Score: 387
Period size: 129 Copynumber: 4.0 Consensus size: 131
17354047 CTCATACCAT
* * * * *
17354057 AATTGGCATGT-GGCCAAATTGACTATTATGCCCTCATACAATAATTACGAAAATAAT-CATTCT
1 AATTGACATGTAGTCCAAATTGACTATTATGCCCTCATACCATAATTACG-AAATAGTCCCTTCT
* * * * * * *
17354120 CTTACAAATATTTACTAAATAAT-CTTTAATGAAATTACCAAGATACTC-TTTCCATTATATGAT
65 TTTATAATTATTTACTAAATAATCCCTTAA-GAAATTACTAAAATACACATTTCCATTATATGAT
17354183 AAG
129 AAG
* * * * *** *
17354186 CAATTGACTTGTGGT-CAAGTTGACTACTATTTGCTCATACCATAATTAC-AAA-AGTACACTT-
1 -AATTGACATGTAGTCCAAATTGACTATTATGCCCTCATACCATAATTACGAAATAGT-CCCTTC
* * * * * * * * *
17354247 TGTTTGATGATTATTTAGTAAATAATTCCTCATA-AAATTGCTAGAATAC-CATATCTAATATAT
64 T-TTT-ATAATTATTTACTAAATAATCCCTTA-AGAAATTACTAAAATACACATTTCCATTATAT
17354310 GATAAG
126 GATAAG
* ** *
17354316 AATTGACATGTAG-CTAAACGGACTATTATGCCCTCATACCATAATTACGAAATTGTCCCTT-TT
1 AATTGACATGTAGTCCAAATTGACTATTATGCCCTCATACCATAATTACGAAATAGTCCCTTCTT
* *
17354379 TTATAATTATTTACTAAACAATCCCTTAAGAAATTA-TCAAAATAC-CATTTCCATTATATAATA
66 TTATAATTATTTACTAAATAATCCCTTAAGAAATTACT-AAAATACACATTTCCATTATATGATA
17354442 AG
130 AG
* ** * * * *
17354444 AAGTTAACATGT-GTCCAAATTGACTATTACACCCTCATA-CATAGTTA-TAAAAATGCCCCTTC
1 AA-TTGACATGTAGTCCAAATTGACTATTATGCCCTCATACCATAATTACGAAATA-GTCCCTTC
* * * * * *
17354506 TTTTTTAATTATTTACTAAATAAACCCATATGAAATTACTAAAATACACCTTTTCATTATATGAT
64 TTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACACATTTCCATTATATGAT
17354571 TAGATCAAAT
Statistics
Matches: 297, Mismatches: 68, Indels: 38
0.74 0.17 0.09
Matches are distributed among these distances:
127 7 0.02
128 68 0.23
129 113 0.38
130 102 0.34
131 6 0.02
132 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (131 bp):
AATTGACATGTAGTCCAAATTGACTATTATGCCCTCATACCATAATTACGAAATAGTCCCTTCTT
TTATAATTATTTACTAAATAATCCCTTAAGAAATTACTAAAATACACATTTCCATTATATGATAA
G
Found at i:17354803 original size:130 final size:128
Alignment explanation
Indices: 17354632--17355800 Score: 744
Period size: 130 Copynumber: 9.1 Consensus size: 128
17354622 GATGAAAAAG
* * * *
17354632 TGACATGTGTCCAAA-TGTACTATTATGCCCTTATATCATAATTATGAAAATAGCCTTTCTCTTA
1 TGACATGTGGCCAAATTG-ACTATTATGCCCTCATACCATAATTATGAAAATAGCCCTTCTCTTA
* * *
17354696 TAATTATTTACTAAATAATCCTTTAAGAAAATATTAAGATTCCCTTTCCT-TTATGAAATAAGAA
65 TAATTATTTACTAAATAATCCTTTAAGAAATTATTAAAATACCCTTT-CTATTATG--ATAAGAA
17354760 AT
127 AT
* * ** ** * *
17354762 TGACATGTGGCTAAATTGA-TAATTATGCCCTTATATTATAATTACAAAAATATCCCTTGTCTTA
1 TGACATGTGGCCAAATTGACT-ATTATGCCCTCATACCATAATTATGAAAATAGCCCTTCTCTTA
* * * * * * ** * *
17354826 TAATTAGTCAATAAATAATCCCTTACGAAGTTACCAAAATACCATTTCAATTATATGATAAGAAA
65 TAATTATTTACTAAATAATCCTTTAAGAAATTATTAAAATACCCTTTCTA-T-TATGATAAGAAA
17354891 T
128 T
* * * *
17354892 TGACAAT-TGGCCAACTGGACTATTATGCCCTCTTACCAT-A--ATGAAAA-AGCCCTTCTCTTG
1 TGAC-ATGTGGCCAAATTGACTATTATGCCCTCATACCATAATTATGAAAATAGCCCTTCTCTTA
* * ** *
17354952 TAATTATTTGCTAAATAATGCTTTATA-AAATTAAGAAAATACTCTTTCTATTAATGATAAGAAA
65 TAATTATTTACTAAATAATCCTTTA-AGAAATTATTAAAATACCCTTTCTATT-ATGATAAGAAA
17355016 T
128 T
** * * * *
17355017 TGACATACGACCAAATTGACTATTATACCCTCATA-TATAATTATGATAAT-GCCCCTTCTCTTA
1 TGACATGTGGCCAAATTGACTATTATGCCCTCATACCATAATTATGAAAATAG-CCCTTCTCTTA
* * * * *
17355080 TAACTATTTACTAAATAAT-CTCTTAACAAATTACTAAAATACCTTTTCTATTATATGATAAGCA
65 TAATTATTTACTAAATAATCCT-TTAAGAAATTATTAAAATACCCTTTCTA-T-TATGATAAGAA
17355144 AT
127 AT
* * * *
17355146 TGACATGTGGCCGAA-TGAACTGTTATTCCCTCATACCATAATTATGAAAAT-GACCTTCTCTTA
1 TGACATGTGGCCAAATTG-ACTATTATGCCCTCATACCATAATTATGAAAATAGCCCTTCTCTTA
* * * * * * * *
17355209 TAATTATTTAGTATATAATCCCTTATGAAATTATGAAAATACACTTT-TAATTGTATAATATGAA
65 TAATTATTTACTAAATAATCCTTTAAGAAATTATTAAAATACCCTTTCT-A-T-TATGATAAGAA
17355273 AT
127 AT
* * * * * * * *
17355275 TGACATGTGGTCAAATGGACTATTATACCCTCATGCCATAATTAAGAAAAT-GCTACATCTTTTA
1 TGACATGTGGCCAAATTGACTATTATGCCCTCATACCATAATTATGAAAATAGC-CCTTCTCTTA
* * * * * * *
17355339 TAATTATTTACTAATTAATCC-CTAAGGGAATT-TCTAAAATTCTCTTTCTGATATTTGATAACA
65 TAATTATTTACTAAATAATCCTTTAA-GAAATTAT-TAAAATACCCTTTCT-AT-TATGATAAGA
17355402 AAT
126 AAT
* * * * * *
17355405 TGACATGTGACAAAATTGACTATTATGCCCTCATATCATAATTATGATAATA--CCTTTTTTTAT
1 TGACATGTGGCCAAATTGACTATTATGCCCTCATACCATAATTATGAAAATAGCCCTTCTCTTAT
* * ** * *
17355468 AATTATTTATTAAATAATCC--TAA-AAA-AATTACCATGCCCTTTTTTATTATATGATAAGAAA
66 AATTATTTACTAAATAATCCTTTAAGAAATTATTAAAATACCC-TTTCTA-T-TATGATAAGAAA
17355529 T
128 T
** * * * * * * * *
17355530 TGACATGTATCCAAATTGGCTATTAT-TCTTCCATTCCATCA-TATG-AAATA-TCCTTTTCGTA
1 TGACATGTGGCCAAATTGACTATTATGCCCT-CATACCATAATTATGAAAATAGCCCTTCTCTTA
* * * * * * * *
17355591 TAATTATTTACTAAATAAT-CTCCTATGAAATTACTAAAGTACTCTCTCCATTATGTGATAAAAA
65 TAATTATTTACTAAATAATCCT-TTAAGAAATTATTAAAATACCCTTTCTATTA--TGATAAGAA
17355655 AT
127 AT
* ** * * * * * * *
17355657 TAACATGTTACAAAATGGACTATTATGCCTTCATGCTATAATTATGAAAATACCCCTTCTTTTAT
1 TGACATGTGGCCAAATTGACTATTATGCCCTCATACCATAATTATGAAAATAGCCCTTCTCTTAT
* * * ** *
17355722 AATTATTTACTAAATAATTAC-TTATGGAATTACAAAAATA-CCTGTTCCATTACATGATAAGAA
66 AATTATTTACTAAATAA-TCCTTTAAGAAATTATTAAAATACCCT-TTCTATT--ATGATAAGAA
17355785 AT
127 AT
*
17355787 TGATATGTGGCCAA
1 TGACATGTGGCCAA
17355801 TGCATTATAA
Statistics
Matches: 804, Mismatches: 185, Indels: 100
0.74 0.17 0.09
Matches are distributed among these distances:
123 5 0.01
124 44 0.05
125 91 0.11
126 49 0.06
127 61 0.08
128 91 0.11
129 152 0.19
130 296 0.37
131 9 0.01
132 6 0.01
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (128 bp):
TGACATGTGGCCAAATTGACTATTATGCCCTCATACCATAATTATGAAAATAGCCCTTCTCTTAT
AATTATTTACTAAATAATCCTTTAAGAAATTATTAAAATACCCTTTCTATTATGATAAGAAAT
Found at i:17354818 original size:26 final size:29
Alignment explanation
Indices: 17354789--17354850 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 29
17354779 GATAATTATG
17354789 CCCTTATATTATAATTA-CAA-AAAT-AT
1 CCCTTATATTATAATTAGCAATAAATAAT
* *
17354815 CCCTTGTCTTATAATTAGTCAATAAATAAT
1 CCCTTATATTATAATTAG-CAATAAATAAT
17354845 CCCTTA
1 CCCTTA
17354851 CGAAGTTACC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 15 0.52
28 3 0.10
29 4 0.14
30 7 0.24
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.39
Consensus pattern (29 bp):
CCCTTATATTATAATTAGCAATAAATAAT
Found at i:17354843 original size:572 final size:567
Alignment explanation
Indices: 17354063--17355138 Score: 1207
Period size: 572 Copynumber: 1.9 Consensus size: 567
17354053 CCATAATTGG
*
17354063 CATGTGGCCAAATTGACTATTATGCCCTCATACAATAATTACGAAAATAATCATTCTCTTACAAA
1 CATGTGGCCAAATTGACTATTATGCCCTCATACAATAATTACGAAAATAACCATTCTCTTACAAA
* * *
17354128 TATTTACTAAATAATCTTTAATGAAATTACCAAGATACTCTTTCCATTATATGATAAGCAATTGA
66 TATTTACTAAATAATCTTTAATGAAAATACCAAGATACCCTTTCCATTATATGATAAGAAATTGA
* * * * *
17354193 CTTGTGGTCAAGTTGACTACTATTTGCTCATACCATAATTACAAAAGTACACTTTGTTTGATGAT
131 CATGTGGTCAAATTGACTAC-ATTTGCTCATACCATAATTACAAAAATACACCTTGTTTGATAAT
* * * * * * * *
17354258 TATTTAGTAAATAATTCCTCATAAAATTGCTAGAATACCATATCTAA-TATATGATAAG-AATTG
195 TAGTCAATAAATAATCCCTCACAAAATTACCAAAATACCATATC-AATTATATGATAAGAAATTG
** *
17354321 AC-ATGTAGCTAAAC-GGACTATTATGCCCTCATACCATAATTACGAAATTGTCCCTT-TTTTAT
259 ACAAT-TAGC-AAACTGGACTATTATGCCCTCATACCATAA-T--GAAAAAG-CCCTTCTCTTAT
*
17354383 AATTATTTACTAAACAATCCCTTA-AGAAATTATCAAAATAC-CATTTCCATTATATAATAAGAA
318 AATTATTTACTAAACAATCCCTTATA-AAATTAACAAAATACTC-TTTCCATTA-ATAATAAGAA
* ** * * * *
17354446 GTTAACATGTGTCCAAATTGACTATTACACCCTCATACATAGTTATAAAAATGCCCCTTCTTTTT
380 ATTAACATACGACCAAATTGACTATTACACCCTCATACATAATTATAAAAATGCCCCTTCTCTTA
* **
17354511 TAATTATTTACTAAATAAACCCATATGAAATTACTAAAATACACCTTTTC-ATTATATGATTAGA
445 TAACTATTTACTAAATAAACCCATAACAAATTACTAAAAT--ACCTTTTCTATTATATGATTAGA
17354575 TCAAATGAATCGCTTACGAAATTATAAAACTATGAATCCCATTATTTGATGAAAAAGTGA
508 TCAAATGAATCGCTTACGAAATTATAAAACTATGAATCCCATTATTTGATGAAAAAGTGA
* * * * * *
17354635 CATGTGTCCAAA-TGTACTATTATGCCCTTATATC-ATAATTATGAAAATAGCCTTTCTCTTATA
1 CATGTGGCCAAATTG-ACTATTATGCCCTCATA-CAATAATTACGAAAATAACCATTCTCTTACA
* ** *
17354698 ATTATTTACTAAATAATCCTTTAA-GAAAATATTAAGATTCCCTTTCC-TT-TATGAAATAAGAA
64 AATATTTACTAAATAAT-CTTTAATGAAAATACCAAGATACCCTTTCCATTATATG--ATAAGAA
* **
17354760 ATTGACATGTGG-CTAAATTGA-TA-ATTATGCCCTTATATTATAATTACAAAAATATC-CCTTG
126 ATTGACATGTGGTC-AAATTGACTACATT-TG--CTCATACCATAATTACAAAAATA-CACCTTG
* * * *
17354821 TCTT-ATAATTAGTCAATAAATAATCCCTTACGAAGTTACCAAAATACCATTTCAATTATATGAT
186 T-TTGATAATTAGTCAATAAATAATCCCTCACAAAATTACCAAAATACCATATCAATTATATGAT
* * *
17354885 AAGAAATTGACAATTGGCCAACTGGACTATTATGCCCTCTTACCATAATGAAAAAGCCCTTCTCT
250 AAGAAATTGACAATTAGCAAACTGGACTATTATGCCCTCATACCATAATGAAAAAGCCCTTCTCT
* * * * * * * *
17354950 TGTAATTATTTGCTAAATAATGCTTTATAAAATTAAGAAAATACTCTTTCTATTAATGATAAGAA
315 TATAATTATTTACTAAACAATCCCTTATAAAATTAACAAAATACTCTTTCCATTAATAATAAGAA
* * * * *
17355015 ATTGACATACGACCAAATTGACTATTATACCCTCATATATAATTATGATAATGCCCCTTCTCTTA
380 ATTAACATACGACCAAATTGACTATTACACCCTCATACATAATTATAAAAATGCCCCTTCTCTTA
* * *
17355080 TAACTATTTACTAAATAATCTCTTAACAAATTACTAAAATACCTTTTCTATTATATGAT
445 TAACTATTTACTAAATAAACCCATAACAAATTACTAAAATACCTTTTCTATTATATGAT
17355139 AAGCAATTGA
Statistics
Matches: 418, Mismatches: 67, Indels: 42
0.79 0.13 0.08
Matches are distributed among these distances:
567 8 0.02
568 10 0.02
569 104 0.25
570 56 0.13
571 11 0.03
572 183 0.44
573 44 0.11
574 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (567 bp):
CATGTGGCCAAATTGACTATTATGCCCTCATACAATAATTACGAAAATAACCATTCTCTTACAAA
TATTTACTAAATAATCTTTAATGAAAATACCAAGATACCCTTTCCATTATATGATAAGAAATTGA
CATGTGGTCAAATTGACTACATTTGCTCATACCATAATTACAAAAATACACCTTGTTTGATAATT
AGTCAATAAATAATCCCTCACAAAATTACCAAAATACCATATCAATTATATGATAAGAAATTGAC
AATTAGCAAACTGGACTATTATGCCCTCATACCATAATGAAAAAGCCCTTCTCTTATAATTATTT
ACTAAACAATCCCTTATAAAATTAACAAAATACTCTTTCCATTAATAATAAGAAATTAACATACG
ACCAAATTGACTATTACACCCTCATACATAATTATAAAAATGCCCCTTCTCTTATAACTATTTAC
TAAATAAACCCATAACAAATTACTAAAATACCTTTTCTATTATATGATTAGATCAAATGAATCGC
TTACGAAATTATAAAACTATGAATCCCATTATTTGATGAAAAAGTGA
Found at i:17355410 original size:259 final size:256
Alignment explanation
Indices: 17354615--17355487 Score: 654
Period size: 259 Copynumber: 3.4 Consensus size: 256
17354605 TATGAATCCC
* * * * * *
17354615 ATTATTTGATGAA-AAAGTGACATGTGTCCAAATGTACTATTATGCCCTTATATCATAATTATGA
1 ATTATATGAT-AACAAATTGACATGTGGCCAACTG-ACTATTATGCCCTCATACCATAATTATGA
* * * ** * * *
17354679 AAAT-AGCCTTTCTCTTATAATTATTTACTAAATAATCCTTTA-AGAAAATATTAAGATTCCCTT
64 AAATGA-CC-TTCTCTTATAATTATTTAGTAAATAATCCCTTATA-AAATTAAGAAAATACACTT
** * * * * * *
17354742 TCCT-TT-ATGAAATAAGAAATTGACATGTGGCTAAATTGA-TAATTATGCCCTTATATTATAAT
126 T-CTATTAAT--AATAAGAAATTGACATACGACCAAATGGACT-ATTATACCCTCATA-CATAAT
* * * * * * * * * *
17354804 TACA-AAAATATCC-CTTGTCTTATAATTAGTCAATAAATAATC-CCTTACGAAGTTACCAAAAT
186 TA-AGAAAAT-GCCACATCTCTTATAACTATTTACTAAATAATCTCCTAAC-AAATTACTAAAAT
* *
17354866 ACCATTTCA
248 ACCTTTTCT
* *
17354875 ATTATATGATAAGAAATTGACAAT-TGGCCAACTGGACTATTATGCCCTCTTACCAT-A--ATGA
1 ATTATATGATAACAAATTGAC-ATGTGGCCAACT-GACTATTATGCCCTCATACCATAATTATGA
* * * * * *
17354936 AAAAGCCCTTCTCTTGTAATTATTT-GCTAAATAATGCTTTATAAAATTAAGAAAATACTCTTTC
64 AAATGACCTTCTCTTATAATTATTTAG-TAAATAATCCCTTATAAAATTAAGAAAATACACTTTC
* * * * *
17355000 TATTAATGATAAGAAATTGACATACGACCAAATTGACTATTATACCCTCATATATAATTATGATA
128 TATTAATAATAAGAAATTGACATACGACCAAATGGACTATTATACCCTCATACATAATTAAGAAA
* * *
17355065 ATGCCCCTTCTCTTATAACTATTTACTAAATAATCTCTTAACAAATTACTAAAATACCTTTTCT
193 ATGCCACATCTCTTATAACTATTTACTAAATAATCTCCTAACAAATTACTAAAATACCTTTTCT
* *
17355129 ATTATATGATAAGC-AATTGACATGTGGCCGAA-TGAACTGTTATTCCCTCATACCATAATTATG
1 ATTATATGATAA-CAAATTGACATGTGGCC-AACTG-ACTATTATGCCCTCATACCATAATTATG
* * *
17355192 AAAATGACCTTCTCTTATAATTATTTAGTATATAATCCCTTATGAAATTATGAAAATACACTTT-
63 AAAATGACCTTCTCTTATAATTATTTAGTAAATAATCCCTTATAAAATTAAGAAAATACACTTTC
* * ** ** *
17355256 TAATTGTATAATATGAAATTGACATGTGGTCAAATGGACTATTATACCCTCATGCCATAATTAAG
128 T-ATT-AATAATAAGAAATTGACATACGACCAAATGGACTATTATACCCTCAT-ACATAATTAAG
* * * * ** * *
17355321 AAAATGCTACATCTTTTATAATTATTTACTAATTAATC-CCTAAGGGAATTTCTAAAAT-TCTCT
190 AAAATGCCACATCTCTTATAACTATTTACTAAATAATCTCCTAA-CAAATTACTAAAATACCT-T
17355384 TTCT
253 TTCT
* * * * *
17355388 GA-TATTTGATAACAAATTGACATGTGACAAAATTGACTATTATGCCCTCATATCATAATTATGA
1 -ATTATATGATAACAAATTGACATGTGGC-CAACTGACTATTATGCCCTCATACCATAATTATGA
* * * *
17355452 TAAT-ACCTTTTTTTATAATTATTTATTAAATAATCC
64 AAATGACCTTCTCTTATAATTATTTAGTAAATAATCC
17355488 TAAAAAAATT
Statistics
Matches: 498, Mismatches: 86, Indels: 60
0.77 0.13 0.09
Matches are distributed among these distances:
253 5 0.01
254 97 0.19
255 45 0.09
256 47 0.09
257 71 0.14
258 75 0.15
259 111 0.22
260 44 0.09
261 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (256 bp):
ATTATATGATAACAAATTGACATGTGGCCAACTGACTATTATGCCCTCATACCATAATTATGAAA
ATGACCTTCTCTTATAATTATTTAGTAAATAATCCCTTATAAAATTAAGAAAATACACTTTCTAT
TAATAATAAGAAATTGACATACGACCAAATGGACTATTATACCCTCATACATAATTAAGAAAATG
CCACATCTCTTATAACTATTTACTAAATAATCTCCTAACAAATTACTAAAATACCTTTTCT
Found at i:17356287 original size:129 final size:128
Alignment explanation
Indices: 17355820--17358657 Score: 1694
Period size: 130 Copynumber: 22.0 Consensus size: 128
17355810 ATAAAAGTGG
* *
17355820 TATTTTCGTAATTATGGTATGAG-GATATAATAGTTC-ATTTGGCCACATGTCAATTTCTTATCA
1 TATTTTCATAATTATGGTATGAGAG-CATAATAG-TCAATTTGGCCACATGTCAATTTCTTATCA
* * * *
17355883 TAAAATGGAAAAGGAATTTTTGTAATTTAATAGGA-ATTATTTAGTAAAT-A--ATAAGAGAATG
64 TATAAT-GAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAT-
*
17355944 GG
127 GA
* * * * * *
17355946 TATTTTCATAATTATGAG-ATAAGGGCATCATTGTCAATTTGACCACATGTCAAATTT-GTATCA
1 TATTTTCATAATTATG-GTATGAGAGCATAATAGTCAATTTGGCCACATGTC-AATTTCTTATCA
* * * * * * * * *
17356009 TATAATGGAAATGACATTTTAGTAACTTCCTAGGGGATTATTTTGTAATTAATTATAAGAAAAGT
64 TATAAT-GAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAA-T
*
17356074 GT
127 GA
* * * ** ** * *
17356076 TATTTTTACAATTATGGCT-TGA-AGGCATAATTGTTGATTTGGTAACAAGTTAATTTCTTATCA
1 TATTTTCATAATTATGG-TATGAGA-GCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCA
* * *
17356139 TATAATGGAAAGAGCATTTTGGTAATGTCACAGGAGATTATTTAGTAAATAATTATAAGAGAATG
64 TATAATGAAAAG-GCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATG
17356204 A
128 A
* * * * * *
17356205 TATCTTAATAATGATGGCATGAGAGAATAATAGTCAATTTGGCCACATGTGAATTTCTTATCATA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * * * *
17356270 TAATATAAAAGGGATTTTGGAAATTTCTTGAGG-GA-TACTTTAGTAAATAATTATGAGAGCAAA
66 TAAT-GAAAAGGCATTTTGGTAATTTCAT-AGGAGATTA-TTTAGTAAATAATTATAAGAG--AA
* *
17356333 GGG
126 TGA
* *
17356336 TATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGGCAATTTC-TATCATA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * * * * * *
17356400 TAATAGAATGAA--TATTTTTGTAATATCATAAGTGACTATTTAGT-AATAATTATAA-AGAAAG
66 TAAT-GAA--AAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATG
17356461 AA
128 -A
* * * * ** * *
17356463 AATTTTCATAATTATGG-A-CAGGGACATAATAGTCCATTTGGCTGCATGTTAATTTCTTATTAT
1 TATTTTCATAATTATGGTATGAGAG-CATAATAGTCAATTTGGCCACATGTCAATTTCTTATCAT
** * * * * * *
17356526 ATAATGAAAATGATATTTTTGTAATTTAATAGGTA-ATTATTTAGTAATTAATTATAAAAAAAAG
65 ATAATGAAAA-GGCATTTTGGTAATTTCATAGG-AGATTATTTAGTAAATAATTAT-AAGAGAAT
17356590 GA
127 GA
* **** * * * ** *
17356592 TATTTTCGTAATTATGACGCGAGGGCAGAATAGTCCATTTGGTAACATGTTAATTTCTTATCATA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
*
17356657 TAATGGAAAGAGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAA-GTA
66 TAATGAAAAG-GCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATG-A
* ** * * * *
17356721 TATTTTCATAATAATCATATGAGGGAATAATAGTCAATTTGGCTACATGTCAATTTCTTATTATA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * * *
17356786 TAATGAAAATGGCATTTTAGTAATTTCTTAAGTA-ACTATTTAGTAAATAATTATAAGAGAA-GA
66 TAATGAAAA-GGCATTTTGGTAATTTCAT-AGGAGATTATTTAGTAAATAATTATAAGAGAATGA
* * * * * * * * *
17356849 GTATTTTCATAATTATGGTATAAGAACATAACAGTCCACTTGGCTATATGTCAAATTCTTATGAT
1 -TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCAT
* * * *
17356914 ATAATGGAAATGGTATTTTTGTAATTTCATAGGTA-ATTATTTAGTAAATAATTATAAGACAATG
65 ATAAT-GAAAAGGCATTTTGGTAATTTCATAGG-AGATTATTTAGTAAATAATTATAAGAGAAT-
*
17356978 GG
127 GA
* ** * * ** * *
17356980 TATTTTCATAATTATGGCACAAGGGCATAATAGTCCATTTGGTAACATATTAATTTCTTATCATA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
*** * * * * * *
17357045 TAATGAAAATAATATTTTAGTAATTTCTTAGGAGATTATTTTGTAAATAATTGTAAGATAAGGA
66 TAATGAAAA-GGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATGA
* * * * * * * *
17357109 TATTTTCATAATGATAGTATGGGAGAATGATAGTCAATTTCG-CACATGTCAATTTCCTAGCATA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * * *
17357173 TAATAAAAAAGGCATTTTGATAATTTCTTGAGG-GATTATTTATTAAATAATTATAAGAGAATGG
66 TAAT-GAAAAGGCATTTTGGTAATTTCAT-AGGAGATTATTTAGTAAATAATTATAAGAGAAT-G
*
17357237 G
128 A
* *
17357238 TATTTTCATAATTATGGTATGATG-GCATAATAGTCAATTTGGCCACATGCCAGTTTCTTA-CTA
1 TATTTTCATAATTATGGTATGA-GAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATC-A
** * ** * * *
17357301 TATAATGGAAGGGGCATTTTGGTAATCTCATAAAATATT-TTTAATAAATAATTATAAAAGAA-G
64 TATAAT-GAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATG
17357364 A
128 A
* * * * * * * *
17357365 GTATTTTCTTAATTAT-GTATAAG-GACGTAATTG-CTATTTTGACCACAT-TGGAATTTTTTAT
1 -TATTTTCATAATTATGGTATGAGAG-CATAATAGTC-AATTTGGCCACATGT-CAATTTCTTAT
* * * * *
17357426 CATATAATGGAAAGGGCATTTTTGTAATTTCATAGGA-ATTATTTAATAATTAATTATAA-AAAA
62 CATATAAT-GAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAA
17357489 TGGAA
126 T-G-A
* * * ** * *
17357494 TATTTTCATAATTATAGCATCA-ACGCATAATAGTCAATTTGGTAACATGTCGATTTCTTATAAT
1 TATTTTCATAATTATGGTATGAGA-GCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCAT
* * *
17357558 ATAACGAAAAAGGCATTTTTGATAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATA
65 ATAATG-AAAAGGCA-TTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATG
17357623 A
128 A
* * * ** * *
17357624 GTATTTTCATAATTATGGCATTTAG-GCATAA-AGTCCATTTGGGAACAGGTCGATTTCTTAT-A
1 -TATTTTCATAATTATGGTA-TGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCA
* * * * * *
17357686 GTATAATGCAAAGGGCATTTTGGTAATTTTATAAGAGATTATTTAGTAAATAATTGTAGGAGAAG
64 -TATAATG-AAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAT
*
17357751 GT
127 GA
* * * * *
17357753 TGTTATT-GTAATT-TGGTATGAGGGCATAATAGTCTATTTGGTCACATGTCAATTTCTTATCAT
1 TATT-TTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCAT
* * * * * * * *
17357816 ATAATGCAAAGGTATTTTTGTAATTTCATA-AAGGATTATTTAGCAAATAATTACAAGAAAAAGA
65 ATAATGAAAAGGCATTTTGGTAATTTCATAGGA-GATTATTTAGTAAATAATTATAAGAGAATGA
* * * * * * * *
17357880 TATTGTCATAATTTTGGTATGAAAGCA-AGTAGTCCAA-TTAGCCAAATGACAATTTCTTATCAA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGT-CAATTTGGCCACATGTCAATTTCTTATCAT
* * * *
17357943 ATAATTG-AATGCGTATTTTGGTAAATTTACA-AGG-GATTAGTAAGTAAATAATTATAAGAGAA
65 ATAA-TGAAAAG-GCATTTTGGT-AATTT-CATAGGAGATTATTTAGTAAATAATTATAAGAGAA
* *
17358005 GGGT
126 -TGA
* * **
17358009 TATTTTCATAATTATGATATGAGAGCATAATTGTCAATTTGGCCACATGTCAATTTCTTATTTTA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * * * * *
17358074 TAAAGGAAAGG-A-TTTGGTATTTTC-TCA-AAGGATTATTCAGTAAATAATTATAAAAG-ATGG
66 TAATGAAAAGGCATTTTGGTAATTTCAT-AGGA-GATTATTTAGTAAATAATTATAAGAGAAT-G
*
17358134 CC
128 -A
* * * * * *
17358136 TATTTAT-GTAATTATGATATAAG-GCCATAATAGTATGTTTTGTAATTTTG-TA-AGTGATTCA
1 TATTT-TCATAATTATGGTATGAGAG-CAT-A-A-TA-G---T-CAATTTGGCCACA-TG--TCA
* ** * * *
17358197 TTTAATCTATATCATATAATAGAACAA-ATATTTT-GAAATTTTCATA-TAGGATTATTTATTAA
53 ATT--TCT-TATCATATAAT-GAA-AAGGCATTTTGGTAA-TTTCATAGGA-GATTATTTAGTAA
* * *
17358259 AT-ATTATAA-AAAAGGGG
111 ATAATTATAAGAGAA-TGA
* * * * ** ** * * * *
17358276 TGTTTTAATAATTA-GGTATAAGGGTGTAATAGTCAATTTGGATAAATGTTAAATTCTTATCGTA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* ** * *
17358340 TAATGAAAAGGGTATTTTGGTAATTTTTTA-AAGGATTATTTAGTAAATAATTAGAAGAATAGAA
66 TAATGAAAA-GGCATTTTGGTAATTTCATAGGA-GATTATTTAGTAAATAATTATAAG---AGAA
*
17358404 -GC
126 TGA
** * * * ** *
17358406 T-TTTTTGTAATTATGGCATGAGGGCATAATAGTAAATTTGGTTACATGTCAATTTCTTATTATA
1 TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
* * * * * * * * *
17358470 CAATGGATAGGGTATTTT-GTCAATTTTATATGG-GATTATTTAGAAAATAATTATCAGACAAAG
66 TAAT-GAAAAGGCATTTTGGT-AATTTCATA-GGAGATTATTTAGTAAATAATTATAAGAGAATG
*
17358533 CG
128 -A
* * * * * * *
17358535 TATTTTTACAATTATGCTATGAGCA-CATAGTAGTCAACTTGACCACAAGTCAATTTCTTATCAT
1 TATTTTCATAATTATGGTATGAG-AGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCAT
* * * * * *
17358599 TTAATGGAAAAGGTATTGTT-ATAATTTCATTGAAGATTATTTAGTAAATATTTATAAGA
65 ATAAT-GAAAAGGCATT-TTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGA
17358658 AAAGGTATTG
Statistics
Matches: 2125, Mismatches: 439, Indels: 292
0.74 0.15 0.10
Matches are distributed among these distances:
124 2 0.00
125 9 0.00
126 128 0.06
127 334 0.16
128 210 0.10
129 577 0.27
130 638 0.30
131 117 0.06
132 16 0.01
133 2 0.00
134 4 0.00
135 7 0.00
136 7 0.00
137 1 0.00
138 4 0.00
139 17 0.01
140 14 0.01
141 14 0.01
142 23 0.01
143 1 0.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.38
Consensus pattern (128 bp):
TATTTTCATAATTATGGTATGAGAGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
TAATGAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAATGA
Found at i:17356813 original size:516 final size:515
Alignment explanation
Indices: 17355819--17358069 Score: 1953
Period size: 516 Copynumber: 4.4 Consensus size: 515
17355809 AATAAAAGTG
* * * *
17355819 GTATTTTCGTAATTATGGTATGAGGATATAATAGTTC-ATTTGGCCACATGTCAATTTCTTATCA
1 GTATTTTCATAATTATGGTATAAGGACATAATAG-TCAATTTGGCCACATGGCAATTTCTTATCA
* * *
17355883 TAAAATGGAAAAGGA-ATTTTTGTAATTTAATAGGAATTATTTAGTAAATAA-TA-AGAG-AATG
65 TATAATGGAAAAGGATATTTTTGTAATTTCATAGGAATTATTTAGTAAATAATTATAAAGAAATG
** * * * *** * *
17355944 GGTATTTTCATAATTATGAGATAAGGGCATCATTGTCAATTTGACCACATGTCAAATTT-GTATC
130 AATATTTTCATAATTATG-GATCAGGGCATAATAGTCAATTTGGTAACATGT-TAATTTCTTATC
* * * * * * *
17356008 ATATAATGGAAATGACATTTTAGTAACTTCCTAGGGGATTATTTTGTAATTAATTATAAGAAAAG
193 ATATAATGAAAATGACATTTTAGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAAAAAAG
* * * * * * * * ** * *
17356073 TGTTATTTTTACAATTATGGCTTGAAGGCATAATTGTTGATTTGGTAACAAGTTAATTTCTTATC
258 -GATATTTTCATAATTATGACGTGAGGGCAGAATAGTCCATTTGGTAACATGTCAATTTCTTATC
* * *
17356138 ATATAATGGAAAGAGCATTTTGGTAATGTCACAGGAGATTATTTAGTAAATAATTATAAGAGAAT
322 ATATAATGGAAAGAGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAG
* * * * *
17356203 G-ATATCTTAATAATGATGGCATGAGAGAATAATAGTCAATTTGGCCACATGTGAATTTCTTATC
387 GTATATTTTCATAAT-ATGGTATGAGGGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATC
* * * * * * *
17356267 ATATAATATAAAAGGGATTTTGGAAATTTCTTGAGGGA-TACTTTAGTAAATAATTATGAGAGCA
451 ATATAAT-GAAAAGGCATTTTGGTAATTTCATAAGGAACTA-TTTAGTAAATAATTATAAGAG--
*
17356331 AAGG
512 AAGA
* *
17356335 GTATTTTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGGCAATTTC-TATCAT
1 GTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGCCACATGGCAATTTCTTATCAT
* * * * *
17356399 ATAATAG-AATGAATATTTTTGTAATATCATAAGTG-ACTATTTAGT-AATAATTATAAAGAAA-
66 ATAATGGAAAAGGATATTTTTGTAATTTCAT-AG-GAATTATTTAGTAAATAATTATAAAGAAAT
* * *
17356460 GAAAATTTTCATAATTATGGA-CAGGGACATAATAGTCCATTTGGCT-GCATGTTAATTTCTTAT
129 GAATATTTTCATAATTATGGATCAGGG-CATAATAGTCAATTTGG-TAACATGTTAATTTCTTAT
* * * * *
17356523 TATATAATGAAAATGATATTTTTGTAATTTAATAGGTA-ATTATTTAGTAATTAATTATAAAAAA
192 CATATAATGAAAATGACATTTTAGTAATTTCATAGG-AGATTATTTAGTAAATAATTAT-AAAAA
* * *
17356587 AAGGATATTTTCGTAATTATGACGCGAGGGCAGAATAGTCCATTTGGTAACATGTTAATTTCTTA
255 AAGGATATTTTCATAATTATGACGTGAGGGCAGAATAGTCCATTTGGTAACATGTCAATTTCTTA
17356652 TCATATAATGGAAAGAGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGA
320 TCATATAATGGAAAGAGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGA
** *
17356717 A-GTATATTTTCATAATAATCATATGAGGGAATAATAGTCAATTTGGCTACATGTCAATTTCTTA
385 AGGTATATTTTCATAAT-ATGGTATGAGGGAATAATAGTCAATTTGGCCACATGTCAATTTCTTA
* * * *
17356781 TTATATAATGAAAATGGCATTTTAGTAATTTCTTAAGTAACTATTTAGTAAATAATTATAAGAGA
449 TCATATAATGAAAA-GGCATTTTGGTAATTTCATAAGGAACTATTTAGTAAATAATTATAAGAGA
17356846 AGA
513 AGA
* * * * * * * * *
17356849 GTATTTTCATAATTATGGTATAAGAACATAACAGTCCACTTGGCTATATGTCAAATTCTTATGAT
1 GTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGCCACATGGCAATTTCTTATCAT
*
17356914 ATAATGGAAATGG-TATTTTTGTAATTTCATAGGTAATTATTTAGTAAATAATTAT-AAGACAAT
66 ATAATGGAAAAGGATATTTTTGTAATTTCATAGG-AATTATTTAGTAAATAATTATAAAGA-AAT
** * *
17356977 GGGTATTTTCATAATTATGGCA-CAAGGGCATAATAGTCCATTTGGTAACATATTAATTTCTTAT
129 GAATATTTTCATAATTATGG-ATC-AGGGCATAATAGTCAATTTGGTAACATGTTAATTTCTTAT
* * * * * * *
17357041 CATATAATGAAAATAATATTTTAGTAATTTCTTAGGAGATTATTTTGTAAATAATTGTAAGATAA
192 CATATAATGAAAATGACATTTTAGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAAAAAA
* * * * *
17357106 GGATATTTTCATAATGAT-A-GT-ATGGG-AGAATGATAGTCAATTTCG-CACATGTCAATTTCC
257 GGATATTTTCATAATTATGACGTGA-GGGCAG-A--ATAGTCCATTTGGTAACATGTCAATTTCT
* * * * * *
17357166 TAGCATATAAT-AAAAAAGGCATTTTGATAATTTCTTGAGG-GATTATTTATTAAATAATTATAA
318 TATCATATAATGGAAAGA-GCATTTTGGTAATTTCAT-AGGAGATTATTTAGTAAATAATTATAA
* * * * *
17357229 GAGAATGG-GTATTTTCATAATTATGGTATGATGGCATAATAGTCAATTTGGCCACATGCCAGTT
381 GAGAA-GGTATATTTTCATAA-TATGGTATGAGGGAATAATAGTCAATTTGGCCACATGTCAATT
** * *
17357293 TCTTA-CTATATAATGGAAGGGGCATTTTGGTAATCTCATAA--AA-TATTTTTAATAAATAATT
444 TCTTATC-ATATAAT-GAAAAGGCATTTTGGTAATTTCATAAGGAACTA--TTTAGTAAATAATT
*
17357354 ATAAAAGAAGA
505 ATAAGAGAAGA
* * * * * *
17357365 GTATTTTCTTAATTAT-GTATAAGGACGTAATTG-CTATTTTGACCACATTGG-AATTTTTTATC
1 GTATTTTCATAATTATGGTATAAGGACATAATAGTC-AATTTGGCCACA-TGGCAATTTCTTATC
** * *
17357427 ATATAATGG-AAAGGGCATTTTTGTAATTTCATAGGAATTATTTAATAATTAATTATAAA-AAAT
64 ATATAATGGAAAAGGATATTTTTGTAATTTCATAGGAATTATTTAGTAAATAATTATAAAGAAAT
* ** **
17357490 GGAATATTTTCATAATTATAGCATCAACGCATAATAGTCAATTTGGTAACATGTCGATTTCTTAT
129 -GAATATTTTCATAATTAT-GGATCAGGGCATAATAGTCAATTTGGTAACATGTTAATTTCTTAT
* * * * *
17357555 AATATAACGAAAAAGGCATTTTTGATAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGA
192 CATATAATGAAAATGACATTTTAG-TAATTTCATAGGAGATTATTTAGTAAATAATTATAA-A-A
* * * * * * *
17357620 ATAA-G-TATTTTCATAATTATGGCATTTA-GGCATAA-AGTCCATTTGGGAACAGGTCGATTTC
254 A-AAGGATATTTTCATAATTATGAC-GTGAGGGCAGAATAGTCCATTTGGTAACATGTCAATTTC
* * * * * *
17357681 TTAT-AGTATAATGCAAAGGGCATTTTGGTAATTTTATAAGAGATTATTTAGTAAATAATTGTAG
317 TTATCA-TATAATGGAAAGAGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAA
* * * * * *
17357745 GAGAAGGT-TGTTATT-GTAATTTGGTATGAGGGCATAATAGTCTATTTGGTCACATGTCAATTT
381 GAGAAGGTATATT-TTCATAATATGGTATGAGGGAATAATAGTCAATTTGGCCACATGTCAATTT
* * * * * *
17357808 CTTATCATATAATGCAAAGGTATTTTTGTAATTTCATAAAGG-ATTATTTAGCAAATAATTACAA
445 CTTATCATATAATGAAAAGGCATTTTGGTAATTTCAT-AAGGAACTATTTAGTAAATAATTATAA
*
17357872 GA-AAAA
509 GAGAAGA
* * * * * * *
17357878 GATATTGTCATAATTTTGGTATGAAAG-CA-AGTAGTCCAA-TTAGCCAAATGACAATTTCTTAT
1 G-TATTTTCATAATTATGGTAT-AAGGACATAATAGT-CAATTTGGCCACATGGCAATTTCTTAT
* * * * * * *
17357940 CAAATAATTG-AATGCG-TATTTTGGTAAATTTACA-AGGGATTAGTAAGTAAATAATTAT-AAG
63 CATATAATGGAAAAG-GATATTTTTGT-AATTT-CATAGGAATTATTTAGTAAATAATTATAAAG
* ** * * * * ** *
17358001 AGAAGGGTTATTTTCATAATTATGATATGAGAGCATAATTGTCAATTTGGCCACATGTCAATTTC
125 A-AATGAATATTTTCATAATTATG-GATCAGGGCATAATAGTCAATTTGGTAACATGTTAATTTC
17358066 TTAT
188 TTAT
17358070 TTTATAAAGG
Statistics
Matches: 1415, Mismatches: 242, Indels: 157
0.78 0.13 0.09
Matches are distributed among these distances:
513 28 0.02
514 273 0.19
515 295 0.21
516 554 0.39
517 164 0.12
518 94 0.07
519 6 0.00
520 1 0.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (515 bp):
GTATTTTCATAATTATGGTATAAGGACATAATAGTCAATTTGGCCACATGGCAATTTCTTATCAT
ATAATGGAAAAGGATATTTTTGTAATTTCATAGGAATTATTTAGTAAATAATTATAAAGAAATGA
ATATTTTCATAATTATGGATCAGGGCATAATAGTCAATTTGGTAACATGTTAATTTCTTATCATA
TAATGAAAATGACATTTTAGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAAAAAAGGAT
ATTTTCATAATTATGACGTGAGGGCAGAATAGTCCATTTGGTAACATGTCAATTTCTTATCATAT
AATGGAAAGAGCATTTTGGTAATTTCATAGGAGATTATTTAGTAAATAATTATAAGAGAAGGTAT
ATTTTCATAATATGGTATGAGGGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATA
ATGAAAAGGCATTTTGGTAATTTCATAAGGAACTATTTAGTAAATAATTATAAGAGAAGA
Found at i:17358651 original size:26 final size:26
Alignment explanation
Indices: 17358622--17358702 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
17358612 TATTGTTATA
17358622 ATTTCATTGAAGATTATTTAGTAAAT
1 ATTTCATTGAAGATTATTTAGTAAAT
* * * *
17358648 ATTT-ATAAGAAAAGGTA-TT-GT-TAT
1 ATTTCAT-TGAAGA-TTATTTAGTAAAT
17358672 AATTTCATTGAAGATTATTTAGTAAAT
1 -ATTTCATTGAAGATTATTTAGTAAAT
17358699 ATTT
1 ATTT
17358703 ATAAGAAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
24 4 0.10
25 14 0.35
26 18 0.45
27 4 0.10
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (26 bp):
ATTTCATTGAAGATTATTTAGTAAAT
Found at i:17358673 original size:51 final size:51
Alignment explanation
Indices: 17358605--17358728 Score: 221
Period size: 51 Copynumber: 2.4 Consensus size: 51
17358595 TCATTTAATG
17358605 GAAAAGGTATTGTTATAATTTCATTGAAGATTATTTAGTAAATATTTATAA
1 GAAAAGGTATTGTTATAATTTCATTGAAGATTATTTAGTAAATATTTATAA
17358656 GAAAAGGTATTGTTATAATTTCATTGAAGATTATTTAGTAAATATTTATAA
1 GAAAAGGTATTGTTATAATTTCATTGAAGATTATTTAGTAAATATTTATAA
*
17358707 GAAAATGAGTATTTTTATAATT
1 GAAAA-G-GTATTGTTATAATT
17358729 ATGCTATGAG
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
51 56 0.80
52 1 0.01
53 13 0.19
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.44
Consensus pattern (51 bp):
GAAAAGGTATTGTTATAATTTCATTGAAGATTATTTAGTAAATATTTATAA
Found at i:17359631 original size:129 final size:128
Alignment explanation
Indices: 17358684--17362157 Score: 2039
Period size: 129 Copynumber: 26.9 Consensus size: 128
17358674 TTTCATTGAA
* * * * * *
17358684 GATTATTTAGTAAATATTTATAAGAAAATGAGTATTTTTATAA-TTATGCTATGAGGGCATAACA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTA-G-TATGAGGGCATAATA
* * * * * * * * *
17358748 ATCAATTTTGTCACATGCCAAATTCTTATTACATAATGGAAAGGTCATTTTGGTATTTTCATAAG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGT-ATTTTGGTAATTTCATAAG
*
17358813 A
128 G
* *
17358814 GATTGTTTAGTAAATAATTATAAGAGGAA-GGGTATTTTCATAA-TTATGATATGAGGGCATAGT
1 GATTATTTAGTAAATAATTATAAGA-GAAGGGGTATTTTCATAATTTA-G-TATGAGGGCATAAT
* * * * ** * *
17358877 TGT-AATTTGGTCACATGTCAATTTTTTATTGTATAATGAAAAAGGCATTTTGGTAAATTT--T-
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATG-GAAAGGTATTTTGGT-AATTTCATA
17358938 AGAG
126 AG-G
* * * ** * * * * *
17358942 GAGTGTTTAGTAAATAATTATAATAGAAGTAGTA-TTTCATGACTATGGTATAAAGGCATAATAG
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCAT-AATTTAGTATGAGGGCATAATAG
* * * * *
17359006 TCCATTTGGTCATATGTCAATTT-TTATCATAAAATGTAAAGGGTATTTTTGTAATTTCAT-AGG
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTCATAAGG
* * ** * * ** *
17359069 AATTATTTGGTAAATAACAATAAGAAAAGGGGTATTTT-AGTAA-TTACGAGATGAAAGCATCAT
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCA-TAATTTA-G-TATGAGGGCATAAT
* * *** * * * ** * *
17359132 TGTCAATTTAATCTCATGTCAATTTTTTATCATATTATGGAAATGACATTTTAGTAATTTAAT-A
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTCATAA
17359196 GG
127 GG
* * * * * * *
17359198 AGATTATTTAGTAATTAATTATAAGAAAAGGGTTATTTTCATAATTATGGCACG-GTGGCATGAT
1 -GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT-TAGTATGAG-GGCATAAT
** * * * *
17359262 AGTCCATTTGGTAACATGTTAATTTCTTATCATATAATGGAAAAAGCATTTTGGTAATTTCA-CA
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG-AAAGGTATTTTGGTAATTTCATAA
17359326 GG
127 GG
* * * * * * ** *
17359328 AGATTATTGAGTAAATAATTATGAGAGAA-GGATAGTTTT-GTAATGATGGTATGAAAGAATAAT
1 -GATTATTTAGTAAATAATTATAAGAGAAGGGGTA-TTTTCATAAT-TTAGTATGAGGGCATAAT
* * * * * * * *
17359391 TGTCAATTTGGCCACATATCAATTTCTTATCATATAATAGAATTGGCATTTTGGTAGTATCATGA
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAA-AGGTATTTTGGTAATTTCAT-A
*
17359456 A-A
126 AGG
* * * * ** * *
17359458 AATTATTTAATAAGTAATTATAAGAGAAGGGCTATTACCGTAATTTAGTATGAGGGCCTAATAGT
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTAGTATGAGGGCATAATAGT
* * * * * * * *
17359523 CCATTTGGCCATATGTTAATTTCTTGTCATATAATGGATTAGGTATTTTCGTAAATTCAAAAGT
66 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGA-AAGGTATTTTGGTAATTTCATAAGG
* *
17359587 GATTATTTAGTAAATAATTATAAGAGAAGGGGTACTTTCATAA-TTATGATAT-AGGGTATAATA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTA-G-TATGAGGGCATAATA
* * * * * * ** * * *
17359650 GTCAATTTGGACACATGTTAACTTCTTATCAAATATTTTAACGAGTATTTTAGTAATTTTATAAG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAG-GTATTTTGGTAATTTCATAAG
17359715 G
128 G
* * * *
17359716 GATTATTTAGTAAATAAATATAAGAAAAGGGATATTTTCATAATTATAGCT-TGAGGG-ATACTA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT-TAG-TATGAGGGCATAATA
** * * *
17359779 GTTAATTTGGTCACATGTCAATTTCTTATCATATATTGGAAAAAAGGTATTTTAGTAATTTCAT-
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGG---AAAGGTATTTTGGTAATTTCATA
* *
17359843 TGTC
126 AG-G
* * * * ** * * *
17359847 GATTATTTAGAAAATAATAATAAGAAAAGAGGTATTTTTGTAATTATTGTATTACGGCATAATAG
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT-TAGTATGAGGGCATAATAG
* * ** * * * *
17359912 TCCATTTGGCCACGTTTCAATTTCTTATCATATTTTGGAAAGGGTATTTTGATAATTACATTAGA
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTCATAAGG
* * * * ** *
17359977 GATCATTTAGTAAATGATGATAAGAGAAAGGGTATTTTTGTAA-TTATGATAT-AGGGGCCTAAT
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTA-G-TATGA-GGGCATAAT
* ** * * * ** ** * **
17360040 AATTAATTTAGCCACATGTCAATTTTTTAACATATAATGGAGCGGTAATTTTAATAATTTCTTGG
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGT-ATTTTGGTAATTTCATAA
17360105 GG
127 GG
* * * * * * * *
17360107 GATTATTAAGCAAATAATTATAAGATATA--GGTATTTTCGTAATTATGGTATCAGAGAATAATA
1 GATTATTTAGTAAATAATTATAAGAGA-AGGGGTATTTTCATAATT-TAGTATGAGGGCATAATA
* ** * *** *
17360170 GTTCATTTGGTTACATGTCAATTTCTTCTCATATAACCAAAAAAGTATTTTGGTAATTTCATAAG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAA-TGGAAAGGTATTTTGGTAATTTCATAAG
*
17360235 T
128 G
* * * * ** * * ** *
17360236 GACTATTTAGTAAATAATTATAAGA-AAAGAGCATTTTTGTAATGATGGTATGAGAACATAATAA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAAT-TTAGTATGAGGGCATAATAG
* * * * *
17360300 TCCATTT-GCCAACATGACAATTTCTTATTATATAATGAAAATGGTATTTT-ATAATTTAAT-AG
65 TCCATTTGGCC-ACATGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTCATAAG
17360362 G
128 G
* * * * * ** *
17360363 TAATTATTTAGTAAATAGTTATAAGAGAAGGGGTACTTTT-GTAA-TTATGACATAAAAGAATAA
1 -GATTATTTAGTAAATAATTATAAGAGAAGGGGTA-TTTTCATAATTTA-G-TATGAGGGCATAA
** * * * * * *
17360426 TAGTGAATTTGG--GCATGTACGAATTTCTTATCGTATAATAGAAAGGGTAATTTGGTAAGTTCT
62 TAGTCCATTTGGCCACATGT-C-AATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTCA
*
17360489 TGAGG
124 TAAGG
* ** *
17360494 GATTATTTAGTAAATAATTATAAGAGAAAAGGGTATTACCATAACTATTA-TAAGAGGGCATAAT
1 GATTATTTAGTAAATAATTATAAGAG-AAGGGGTATTTTCATAA-T-TTAGTATGAGGGCATAAT
* * ** **
17360558 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGAAAAGGAATTTTAATAATTTC-TTTG
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGTATTTTGGTAATTTCATAAG
17360622 AG
128 -G
* * * ** * *
17360624 GATTATTTAATAAATGATGATAA-AGAAATGGTATTTTTATAA-TTATGATATAAGGGCATAATA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTA-G-TATGAGGGCATAATA
** ** * **
17360687 GTTAATTTGGCCACATGTCAATTT-TTATCATATAATAAAAAGGTCATTTTGGTAATTTCTTGGG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGT-ATTTTGGTAATTTCATAAG
17360751 G
128 G
* *
17360752 GATTTTTTAGTAAATAATTATAAGAG-ATGGGTATTTTCATAA-TTATGATATGAGGGCATAATA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTA-G-TATGAGGGCATAATA
** * * * *
17360815 GTTAATTTGGCCACATGTCAATTTTTTATCATATAATAGAAAGGTCATTTTGGTAATTT-TTGAG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGT-ATTTTGGTAATTTCATAAG
17360879 G
128 G
* * * * * * * *
17360880 GATTTTTTAGTAAATATTTATAAGAG-ATGGGTATTTTCATAATTGCTA-TTTAAGAGAATAGTA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT--TAGTATGAGGGCATAATA
* * **
17360943 GTTCATTTGGCCACATGTCAATTTCTTATTATATAATACAAAATGGTATTTTGGTAATTTCATAA
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAAT-GGAAA-GGTATTTTGGTAATTTCATAA
*
17361008 GC
127 GG
* * * * * * * * * * *
17361010 AACTATTTAGTAAATAATTATAGGA-AAAGAGCATTTTCGTAGTTATGGTATGAAGACATAATAG
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT-TAGTATGAGGGCATAATAG
* * * * * *
17361074 TCCATTTGCCCACATGTCAATTTCTAAGCATATAATGGAAAGGATATTTTTGTAATTTAATAAGT
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGG-TATTTTGGTAATTTCATAAGG
* * * *
17361139 AATTATTTAGTAAATAATTATAAGA-AAGGGGTATTTTCGTAATTATCGTATAAGGGCATAATAG
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT-TAGTATGAGGGCATAATAG
** * * * * *
17361203 TCCATTTGGTAATATGTGAATTTCTGATCATATAATGGAAAGAGCATTTTGGTAATTTCAT-GGG
65 TCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAG-GTATTTTGGTAATTTCATAAGG
* * * * * *
17361267 AGATTATTTAGTAAATAATTATAAGAGAA-TGATATTTTCATAATGATGGTATGAGAGAATAATA
1 -GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAAT-TTAGTATGAGGGCATAATA
* * * * * * * *
17361331 GACAATTTGGCCACATTTCAATTTCTTGTCATATAATAGAAAGGGCATTTTGGTAATTT-TTTAG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTCATAAG
*
17361395 A
128 G
* * * * * * * *
17361396 GATAATTTAGTAAATATTTATAAGAGAAAGAGTA-TTACAGTAATTATGGTACGAAGGCATAATA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCA-TAATT-TAGTATGAGGGCATAATA
* * * * * * **
17361460 GTCTATTTGGCCACATGTCAATTTCTTATCATATAACGAAAAGGAAATTTTAGTGATTTCATTGG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGG-TATTTTGGTAATTTCATAAG
17361525 G
128 G
* * * *** * **
17361526 GATTATTTAGTAAATGATGATAACAGAAGAAATGTTTTTGTAA-TTATGATATGTA-GGCATAAT
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTA-G-TATG-AGGGCATAAT
** * * * * * *
17361589 AGTTAATTTGGCTACATGTCAATTTTTTATCATATAATAGAAAGGTCATTTTGATAATTTCTTGA
63 AGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGT-ATTTTGGTAATTTCATAA
17361654 GG
127 GG
* * * ** * * * *
17361656 GATTTTTTAGCAAATAATTATAAGAG-ATGAATATTTTCGTAA-TTATGACATGAGAGAATAATA
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTA-G-TATGAGGGCATAATA
* * * * * *
17361719 GTTCATTTAGCTATATGTCTACTTT-TTATTATATAATGGAAAGGGTAATTTT-GTAATTTCATA
64 GTCCATTTGGCCACATGTC-AATTTCTTATCATATAATGGAAA-GGT-ATTTTGGTAATTTCATA
17361782 A-G
126 AGG
* * * * ** * ** * * * *
17361784 CACCTATTTAGTAAATAATTGTAAAAGAA-AAGCATTTTTGTAATTATGGTATGAGGACTTAGTA
1 GA-TTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT-TAGTATGAGGGCATAATA
* * * ** * *
17361848 GTCTATTTGCCCACATATCAATTTCTTATCATATAATAAAAAGGGTATTTTTGTAATTTTATAAG
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-GGTATTTTGGTAATTTCATAAG
*
17361913 T
128 G
* * * * * * * * *
17361914 AATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTCATAATATGGCATAAGGGCGTAAGAGT
1 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTAGTATGAGGGCATAATAGT
** * * *
17361979 CCATTTGGTAACATGTTAATTTCTTATCATATAATGGAAAGAGCATTTTAGTAATTTCAT-AGG
66 CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAG-GTATTTTGGTAATTTCATAAGG
* * * * * * * * *
17362042 AGATTATTTAGTAAATAGTTATAAGTGAA-TGATATTTTCATAATGATGGTATGAGTGAATAAGA
1 -GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAAT-TTAGTATGAGGGCATAATA
* * * *
17362106 GTCAATTTGGTCACATGTCAATTTCTTGTCATATAATAGAAAGTGGTATTTT
64 GTCCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA--GGTATTTT
17362158 TGTTATTATG
Statistics
Matches: 2604, Mismatches: 613, Indels: 254
0.75 0.18 0.07
Matches are distributed among these distances:
125 3 0.00
126 9 0.00
127 97 0.04
128 422 0.16
129 1251 0.48
130 638 0.25
131 133 0.05
132 43 0.02
133 5 0.00
134 3 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (128 bp):
GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTTAGTATGAGGGCATAATAGT
CCATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGTATTTTGGTAATTTCATAAGG
Found at i:17359680 original size:387 final size:383
Alignment explanation
Indices: 17358655--17362157 Score: 2592
Period size: 387 Copynumber: 9.0 Consensus size: 383
17358645 AATATTTATA
* * *
17358655 AGAAAAGGTATTGTT-ATAATTTCATTGAA-GATTATTTAGTAAATATTTATAAGAAAATGAG-T
1 AGAAAAGGTATT-TTGGTAATTTCA-T-AACGATTATTTAGTAAATAATTATAAGAGAA-GAGCT
* * * * * * * * * * *
17358717 ATTTTTATAATTATGCTATGAGGGCATAACAATCAATTTTGTCACATGCCAAATTCTTATTACAT
62 ATTTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATAT
* ** * *
17358782 AATGGAAAGGTCATTTTGGTATTTTCATAAGAGATTGTTTAGTAAATAATTATAAGAGGAA-GGG
127 AATGAAAAGGT-ATTTT-GTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGA-GAAGGGG
* * * * **
17358846 TATTTTCATAATTATGATATGAGGGCATAGTTGT-AATTTGGTCACATGTCAATTTTTTATTGTA
189 TATTTTCATAATTATGATAT-AGGGCATAATAGTCAATTTGG-AACATGTCAATTTCTTATCATA
* * * * * *
17358910 TAAT-GAAAAAGGCATTTTGGTAAATTTTAGA-GGAGTGTTTAGTAAATAATTATAATAGAAGTA
252 TAATGGAAAGA-GCATTTTGGT-AATTTCAGAGGGATTATTTAGTAAATAATTATAAGAGAAGGA
* * * * * *
17358973 GTA-TTTCATGACT-ATGGTAT-AAAGGCATAATAGTCCATTTGGTCATATGTCAATTT-TTATC
315 -TATTTTCAT-AATGATGGTATGAGA-GAATAATAGTCAATTTGGCCACATGTCAATTTCTTATC
*
17359034 ATAAAAT
377 ATATAAT
* * * * ** * * *
17359041 -GTAAAGGGTATTTTTGTAATTTCAT-AGGAATTATTTGGTAAATAACAATAAGAAAAGGGGTAT
1 AG-AAAAGGTATTTTGGTAATTTCATAACG-ATTATTTAGTAAATAATTATAAGAGAAGAGCTAT
* * ** * * * *** * * *
17359104 TTTAGTAATTACGAG-ATGAAAGCATCATTGTCAATTTAATCTCATGTCAATTTTTTATCATATT
64 TTTTGTAATTATG-GTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATA
* ** * * * * * * *
17359168 ATGGAAATGACATTTTAGTAATTTAATAGGAGATTATTTAGTAATTAATTATAAGAAAAGGGTTA
128 AT-GAAAAGGTATTTT-GTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTA
** ** * * *
17359233 TTTTCATAATTATGGCACGGTGGCATGATAGTCCATTTGGTAACATGTTAATTTCTTATCATATA
191 TTTTCATAATTATGATATAG-GGCATAATAGTCAATTTGG-AACATGTCAATTTCTTATCATATA
* * * *
17359298 ATGGAAAAAGCATTTTGGTAATTTCACAGGAGATTATTGAGTAAATAATTATGAGAGAAGGATAG
254 ATGGAAAGAGCATTTTGGTAATTTCAGAGG-GATTATTTAGTAAATAATTATAAGAGAAGGATA-
* * * *
17359363 TTTT-GTAATGATGGTATGAAAGAATAATTGTCAATTTGGCCACATATCAATTTCTTATCATATA
317 TTTTCATAATGATGGTATGAGAGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATA
17359427 AT
382 AT
** * * * ** * * *
17359429 AGAATTGGCATTTTGGTAGTATCATGAAAAATTATTTAATAAGTAATTATAAGAGAAGGGCTATT
1 AGAAAAGGTATTTTGGTAATTTCAT-AACGATTATTTAGTAAATAATTATAAGAGAAGAGCTATT
*** * * * * *
17359494 ACCGTAATT-TAGTATGAGGGCCTAATAGTCCATTTGGCCATATGTTAATTTCTTGTCATATAAT
65 TTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAAT
** * *
17359558 GGATTAGGTATTTTCGTAAATTCAAAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTACT
130 -GAAAAGGTATTTT-GTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTATT
* * * * * *
17359623 TTCATAATTATGATATAGGGTATAATAGTCAATTTGGACACATGTTAACTTCTTATCAAATATTT
193 TTCATAATTATGATATAGGGCATAATAGTCAATTTGGA-ACATGTCAATTTCTTATCATATAATG
* * * * * * * *
17359688 TAACGAGTATTTTAGTAATTTTATAAGGGATTATTTAGTAAATAAATATAAGAAAAGGGATATTT
257 GAAAGAGCATTTTGGTAATTTCA-GAGGGATTATTTAGTAAATAATTATAAGAGAA-GGATATTT
* * * * * * *
17359753 TCATAATTATAGCT-TGAG-GGATACTAGTTAATTTGGTCACATGTCAATTTCTTATCATATATT
320 TCATAATGAT-GGTATGAGAGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAAT
* * ** * * * *
17359816 GGAAAAAAGGTATTTTAGTAATTTCATTGTCGATTATTTAGAAAATAATAATAAGAAAAGAGGTA
1 --AGAAAAGGTATTTTGGTAATTTCA-TAACGATTATTTAGTAAATAATTATAAGAGAAGAGCTA
* * * * * *
17359881 TTTTTGTAATTATTGTATTACGGCATAATAGTCCATTTGGCCACGTTTCAATTTCTTATCATATT
63 TTTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATA
* * * * * * * *
17359946 TTGGAAAGGGTATTTTG-ATAATTACATTAGAGATCATTTAGTAAATGATGATAAGAGAAAGGGT
128 AT-GAAAAGGTATTTTGTA-AATT-CATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGT
** * * * ** * *
17360010 ATTTTTGTAATTATGATATAGGGGCCTAATAATTAATTTAGCCACATGTCAATTTTTTAACATAT
190 ATTTTCATAATTATGATATA-GGGCATAATAGTCAATTT-GGAACATGTCAATTTCTTATCATAT
** * ** * * * * *
17360075 AATGGAGCG-GTAATTTTAATAATTTCTTGGGGGATTATTAAGCAAATAATTATAAGATATAGG-
253 AATGGAAAGAG-CATTTTGGTAATTTC-AGAGGGATTATTTAGTAAATAATTATAAGAGA-AGGA
* * * ** *
17360138 TATTTTCGTAATTATGGTATCAGAGAATAATAGTTC-ATTTGGTTACATGTCAATTTCTTCTCAT
315 TATTTTCATAATGATGGTATGAGAGAATAATAG-TCAATTTGGCCACATGTCAATTTCTTATCAT
*
17360202 ATAACC
379 ATAA-T
* * * *
17360208 A-AAAAAGTATTTTGGTAATTTCATAAGTGACTATTTAGTAAATAATTATAAGAAAAGAGC-ATT
1 AGAAAAGGTATTTTGGTAATTTCATAA-CGATTATTTAGTAAATAATTATAAGAGAAGAGCTATT
* ** * * *
17360271 TTTGTAATGATGGTATGAGAACATAATAATCCATTT-GCCAACATGACAATTTCTTATTATATAA
65 TTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCC-ACATGTCAATTTCTTATCATATAA
* * * * * *
17360335 TGAAAATGGTATTTTATAATTTAATAGGTAATTATTTAGTAAATAGTTATAAGAGAAGGGGTACT
129 TGAAAA-GGTATTTTGTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTA-T
* * ** * * * *
17360400 TTT-GTAATTATGACATAAAAGAATAATAGTGAATTTGG-GCATGTACGAATTTCTTATCGTATA
192 TTTCATAATTATGATAT-AGGGCATAATAGTCAATTTGGAACATGT-C-AATTTCTTATCATATA
* * * * * * *
17360463 ATAGAAAGGGTAATTTGGTAAGTTCTTGAGGGATTATTTAGTAAATAATTATAAGAGAAAAGGGT
254 ATGGAAAGAGCATTTTGGTAATTTC-AGAGGGATTATTTAGTAAATAATTATAAGAG--AAGGAT
** ** * * * *
17360528 ATTACCATAACT-ATTATAAGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATA
316 ATTTTCATAA-TGATGGTATGAGAGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATA
17360592 TAAT
380 TAAT
* ** * * * * * * *
17360596 -GAAAAGGAATTTTAATAATTTCTTTGAGGATTATTTAATAAATGATGATAA-AGAA-ATGGTAT
1 AGAAAAGGTATTTTGGTAATTTC-ATAACGATTATTTAGTAAATAATTATAAGAGAAGA-GCTAT
* * * **
17360658 TTTTATAATTATGATATAAGGGCATAATAGTTAATTTGGCCACATGTCAATTT-TTATCATATAA
64 TTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAA
* * * ** * * *
17360722 TAAAAAGGTCATTTTGGTAATTTCTTGGGGGATTTTTTAGTAAATAATTATAAGAG-ATGGGTAT
129 TGAAAAGGT-ATTTT-GTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTAT
* * *
17360786 TTTCATAATTATGATATGAGGGCATAATAGTTAATTTGGCCACATGTCAATTTTTTATCATATAA
192 TTTCATAATTATGATAT-AGGGCATAATAGTCAATTTGG-AACATGTCAATTTCTTATCATATAA
* ** * * * *
17360851 TAGAAAG-GTCATTTTGGTAATTTTTGAGGGATTTTTTAGTAAATATTTATAAGAGATGGGTATT
255 TGGAAAGAG-CATTTTGGTAATTTCAGAGGGATTATTTAGTAAATAATTATAAGAGAAGGATATT
* * * *
17360915 TTCATAAT--TGCTATTTAAGAGAATAGTAGTTC-ATTTGGCCACATGTCAATTTCTTATTATAT
319 TTCATAATGATGGTA--TGAGAGAATAATAG-TCAATTTGGCCACATGTCAATTTCTTATCATAT
17360977 AAT
381 AAT
* * * * *
17360980 ACAAAATGGTATTTTGGTAATTTCATAAGCAACTATTTAGTAAATAATTATAGGAAAAGAGC-AT
1 AGAAAA-GGTATTTTGGTAATTTCATAA-CGATTATTTAGTAAATAATTATAAGAGAAGAGCTAT
* * * * * * *
17361044 TTTCGTAGTTATGGTATGAAGACATAATAGTCCATTTGCCCACATGTCAATTTCTAAGCATATAA
64 TTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAA
* * * *
17361109 TGGAAAGGATATTTTTGTAATTTAATAAGTAATTATTTAGTAAATAATTATAAGA-AAGGGGTAT
129 TGAAAAGG-TA-TTTTGTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTAT
* * * * *
17361173 TTTCGTAATTATCG-TATAAGGGCATAATAGTCCATTTGGTAATATGTGAATTTCTGATCATATA
192 TTTCATAATTAT-GATAT-AGGGCATAATAGTCAATTTGG-AACATGTCAATTTCTTATCATATA
*
17361237 ATGGAAAGAGCATTTTGGTAATTTCATG-GGAGATTATTTAGTAAATAATTATAAGAGAATGATA
254 ATGGAAAGAGCATTTTGGTAATTTCA-GAGG-GATTATTTAGTAAATAATTATAAGAGAAGGATA
* * *
17361301 TTTTCATAATGATGGTATGAGAGAATAATAGACAATTTGGCCACATTTCAATTTCTTGTCATATA
317 TTTTCATAATGATGGTATGAGAGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATA
17361366 AT
382 AT
* * ** * *
17361368 AGAAAGGGCATTTTGGTAATTTTTTAGA-GATAATTTAGTAAATATTTATAAGAGAAAGAG-TAT
1 AGAAAAGGTATTTTGGTAATTTCATA-ACGATTATTTAGTAAATAATTATAAGAG-AAGAGCTAT
*** * * *
17361431 TACAGTAATTATGGTACGAAGGCATAATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAA
64 TTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAA
* * * * ** * * * * *** *
17361496 CGAAAAGGAAATTTTAGTGATTTCATTGGGGATTATTTAGTAAATGATGATAACAGAAGAAATGT
129 TGAAAAGG-TATTTT-GTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTAT
** * * *
17361561 TTTTGTAATTATGATAT-GTAGGCATAATAGTTAATTTGGCTACATGTCAATTTTTTATCATATA
192 TTTCATAATTATGATATAG--GGCATAATAGTCAATTTGG-AACATGTCAATTTCTTATCATATA
* * * * * * *
17361625 ATAGAAAG-GTCATTTTGATAATTTCTTGAGGGATTTTTTAGCAAATAATTATAAGAGATGAATA
254 ATGGAAAGAG-CATTTTGGTAATTTC-AGAGGGATTATTTAGTAAATAATTATAAGAGAAGGATA
* * ** * * * * *
17361689 TTTTCGTAATTATGACATGAGAGAATAATAGTTC-ATTTAGCTATATGTCTACTTT-TTATTATA
317 TTTTCATAATGATGGTATGAGAGAATAATAG-TCAATTTGGCCACATGTC-AATTTCTTATCATA
17361752 TAAT
380 TAAT
* * * * * *
17361756 GGAAAGGGTAATTTT-GTAATTTCATAA-GCACCTATTTAGTAAATAATTGTAAAAGAAAAGC-A
1 AGAAAAGGT-ATTTTGGTAATTTCATAACG-A-TTATTTAGTAAATAATTATAAGAGAAGAGCTA
* * * * * *
17361818 TTTTTGTAATTATGGTATGAGGACTTAGTAGTCTATTTGCCCACATATCAATTTCTTATCATATA
63 TTTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATA
* * * * * *
17361883 ATAAAAAGGGTATTTTTGTAATTTTATAAGTAATTATTTAGTAAATAATTATAAGAGAATGAGTA
128 ATGAAAA-GGTA-TTTTGTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTA
* * * *
17361948 TTTTCATAA-TATGGCATA-AGGGCGTAAGAGTCCATTTGGTAACATGTTAATTTCTTATCATAT
191 TTTTCATAATTAT-G-ATATAGGGCATAATAGTCAATTTGG-AACATGTCAATTTCTTATCATAT
* * * * *
17362011 AATGGAAAGAGCATTTTAGTAATTTCATAGGAGATTATTTAGTAAATAGTTATAAGTGAATGATA
253 AATGGAAAGAGCATTTTGGTAATTTCAGAGG-GATTATTTAGTAAATAATTATAAGAGAAGGATA
* * * *
17362076 TTTTCATAATGATGGTATGAGTGAATAAGAGTCAATTTGGTCACATGTCAATTTCTTGTCATATA
317 TTTTCATAATGATGGTATGAGAGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATA
17362141 AT
382 AT
*
17362143 AGAAAGTGGTATTTT
1 AGAAA-AGGTATTTT
17362158 TGTTATTATG
Statistics
Matches: 2439, Mismatches: 565, Indels: 225
0.76 0.17 0.07
Matches are distributed among these distances:
382 3 0.00
383 2 0.00
384 60 0.02
385 162 0.07
386 215 0.09
387 792 0.32
388 713 0.29
389 247 0.10
390 131 0.05
391 111 0.05
392 3 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (383 bp):
AGAAAAGGTATTTTGGTAATTTCATAACGATTATTTAGTAAATAATTATAAGAGAAGAGCTATTT
TTGTAATTATGGTATGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATG
AAAAGGTATTTTGTAAATTCATAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTC
ATAATTATGATATAGGGCATAATAGTCAATTTGGAACATGTCAATTTCTTATCATATAATGGAAA
GAGCATTTTGGTAATTTCAGAGGGATTATTTAGTAAATAATTATAAGAGAAGGATATTTTCATAA
TGATGGTATGAGAGAATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAAT
Found at i:17361835 original size:517 final size:518
Alignment explanation
Indices: 17358671--17362148 Score: 1917
Period size: 517 Copynumber: 6.7 Consensus size: 518
17358661 GGTATTGTTA
* * * * * *
17358671 TAATTTCATTGAA-GATTATTTAGTAAATATTTATAAGAA-AATGAGTATTTTTATAATTATGCT
1 TAATTTCA-TGAAGGACTATTTAGTAAATAATTATAA-AAGAA-AAGCATTTTTATAATGATGGT
* * * * * * * * * *
17358734 ATGAG-GGCATAACA-ATCAATTTTGTCACATGCCAAATTCTTATTACATAATGGAAAGGTCATT
63 ATGAGAGACATAATAGA-CAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGGCATT
* * *
17358797 TTGGT-ATTTTCATA-AGAGATTGTTTAGTAAATAATTATAAGAGGAA-GGGTATTTTCATAATT
127 TTGGTAATTTT-ATAGAGA-ATTATTTAGTAAATATTTATAAGA-GAATGAGTATTTTCATAA-T
** * * * * * * * ** *
17358859 ATGATATGAGGGCATAGTTGT-AATTTGGTCACATGTCAATTTTTTATTGTATAATGAAAAAGG-
188 ATGGCATTAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACG-AAAAGGA
* * * * * * * * * * *
17358922 CATTTTGGTAAATT--TTAGAGGAGTGTTTAGTAAATAATTATAATAG-AAGTA-GTATTTCATG
252 AATTTTAGTAATTTCATTGGA-GATTATTTAGTAAATAATGATAAGAGAAAGAATGT-TTTCGTA
* * * * * * * *
17358983 ACTATGGTATAAAGGCATAATAGTCCATTTGGTCATATGTCAATTT-TTATCATAAAATGTAAAG
315 ATTATGATAT-GAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-
** * * * * ** * * *
17359047 GGT-ATTTTTGTAATTTCAT-AGGAATTATTTGGTAAATAACAATAAGAAAAGGGGTATTTTAGT
378 GGTAATTTTAATAATTTCTTGAGGGATTATTTAGCAAATAATTATAAG-AAATGAGTATTTTCGT
* * * * * ** * *
17359110 AATTACGAGATGAA-AGCATCATTG-TCAATTTAATCT-CATGTCAATTTTTTATCATATTATG-
442 AATTATGATAT-AAGAGAATAATAGTTC-ATTT-GGCTACATGTCAATTTCTTATCATATAATGA
* * * *
17359171 GAAATGACATTTTAG
504 AAAAAGTCATTTTGG
* * * * * * *
17359186 TAATTTAAT-AGGAGATTATTTAGTAATTAATTAT--AAGAAAAGGGTTATTTTCATAATTATGG
1 TAATTTCATGAAG-GACTATTTAGTAAATAATTATAAAAGAAAA--G-CATTTTTATAATGATGG
* * * * * * * ** * * **
17359248 CACG-GTGGCATGATAGTCCATTTGGTAACATGTTAATTTCTTATCATATAATGGAAAAAGCATT
62 TATGAGAGACATAATAGACAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGGCATT
* * * * * * *
17359312 TTGGTAATTTCACAG-GAGATTATTGAGTAAATAATTATGAGAGAAGGA-TAGTTTT-GTAATGA
127 TTGGTAATTTTATAGAGA-ATTATTTAGTAAATATTTATAAGAGAATGAGTA-TTTTCATAAT-A
* * * * * * * * ** *
17359374 TGGTATGAAAGAATAATTGTCAATTTGGCCACATATCAATTTCTTATCATATAATAGAATTGG-C
189 TGGCATTAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAA-CGAAAAGGAA
* * * * * * * * * ** * **
17359438 ATTTTGGTAGTATCA-TGAAAAATTATTTAATAAGTAATTATAAGAGAAGGGCTATTACCGTAAT
253 ATTTTAGTAATTTCATTG-GAGATTATTTAGTAAATAATGATAAGAGAAAGAATGTTTTCGTAAT
* * * * * *
17359502 T-T-AGTATGAGGGCCTAATAGTCCATTTGGCCATATGTTAATTTCTTGTCATATAATGGATTAG
317 TATGA-TATGA-GGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGA-AAG
** * *** * * * * * *
17359565 GT-ATTTTCGTAAATTCAAAAGTGATTATTTAGTAAATAATTATAAGAGAAGGGGTACTTTCATA
379 GTAATTTTAATAATTTCTTGAGGGATTATTTAGCAAATAATTATAAGA-AATGAGTATTTTCGTA
* * * * * * **
17359629 ATTATGATAT-AGGGTATAATAG-TCAATTTGGAC-ACATGTTAACTTCTTATCAAATATTTTAA
443 ATTATGATATAAGAGAATAATAGTTC-ATTTGG-CTACATGTCAATTTCTTATCATATAATGAAA
** *
17359691 CGAGT-ATTTTAG
506 AAAGTCATTTTGG
* * * * *
17359703 TAATTTTAT-AAGGGATTATTTAGTAAATAA--ATATAAGAAAAGGGATATTTTCATAATTATAG
1 TAATTTCATGAA-GGACTATTTAGTAAATAATTATAAAAGAAAA-GCAT-TTTT-ATAATGAT-G
* * * ** * * * * *
17359765 CT-TGAG-G-GATACTAGTTAATTTGGTCACATGTCAATTTCTTATCATATATTGGAAAAAAGGT
61 GTATGAGAGACATAATAGACAATTTGGCCACATGTCAATTTCTTATCATATAAT--AGAAAGGGC
* * * * * * * * **
17359827 ATTTTAGTAATTTCATTGTCG-ATTATTTAGAAAATAATAATAAGA-AAAGAGGTATTTTTGTAA
124 ATTTTGGTAATTTTATAG-AGAATTATTTAGTAAATATTTATAAGAGAATGA-GTATTTTCATAA
* * * * * *** *
17359890 TTATTGTATTACGGCATAATAGTCCATTTGGCCACGTTTCAATTTCTTATCATATTTTGGAAAGG
187 -TATGGCATTAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACGAAAAGG
** * * * * ** * *
17359955 GTATTTT-GATAATTACATTAGAGATCATTTAGTAAATGATGATAAGAGAAAGGGTATTTTTGTA
251 AAATTTTAG-TAATTTCATTGGAGATTATTTAGTAAATAATGATAAGAGAAAGAATGTTTTCGTA
* * * * * * * **
17360019 ATTATGATATAGGGGCCTAATAATTAATTTAGCCACATGTCAATTTTTTAACATATAATGGAGCG
315 ATTATGATAT-GAGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAG
* * *
17360084 GTAATTTTAATAATTTCTTGGGGGATTATTAAGCAAATAATTATAAGATAT-AGGTATTTTCGTA
379 GTAATTTTAATAATTTCTTGAGGGATTATTTAGCAAATAATTATAAGAAATGA-GTATTTTCGTA
* * * * **
17360148 ATTATGGTATCAGAGAATAATAGTTCATTTGGTTACATGTCAATTTCTTCTCATATAACCAAAAA
443 ATTATGATATAAGAGAATAATAGTTCATTTGGCTACATGTCAATTTCTTATCATATAATGAAAAA
17360213 AGT-ATTTTGG
508 AGTCATTTTGG
* *
17360223 TAATTTCAT-AAGTGACTATTTAGTAAATAATTATAAGAA-AAGAGCATTTTTGTAATGATGGTA
1 TAATTTCATGAAG-GACTATTTAGTAAATAATTATAA-AAGAAAAGCATTTTTATAATGATGGTA
* * * * *
17360286 TGAGA-ACATAATA-ATCCATTT-GCCAACATGACAATTTCTTATTATATAAT-GAAAATGGTAT
64 TGAGAGACATAATAGA-CAATTTGGCC-ACATGTCAATTTCTTATCATATAATAG-AAAGGGCAT
* * * * * *
17360347 TTT-ATAATTTAATAG-GTAATTATTTAGTAAATAGTTATAAGAGAAGGGGTACTTTT-GTAATT
126 TTTGGTAATTTTATAGAG-AATTATTTAGTAAATATTTATAAGAGAATGAGTA-TTTTCATAA-T
* * * * ** * * * *
17360409 ATGACATAAAAGAATAATAGTGAATTTGG--GCATGTACGAATTTCTTATCGTATAATAGAAAGG
188 ATGGCATTAAGGCATAATAGTCCATTTGGCCACATGT-C-AATTTCTTATCATATAA-CGAAAAG
* * * * * ** *
17360472 GTAA-TTTGGTAAGTTC-TTGAGGGATTATTTAGTAAATAATTATAAGAGAAA-AGGGTATTACC
250 GAAATTTTAGTAATTTCATTG-GAGATTATTTAGTAAATAATGATAAGAGAAAGAATGT-TT-TC
* * * * * *
17360534 ATAACTATTATAAGAGGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAATGAA
312 GTAATTATGATATGA-GGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGA
** * *
17360599 AAGG-AATTTTAATAATTTCTTTGA-GGATTATTTAATAAATGATGATAAAGAAATG-GTATTTT
376 AAGGTAATTTTAATAATTTC-TTGAGGGATTATTTAGCAAATAATTAT-AAGAAATGAGTATTTT
** * * * *
17360661 TATAATTATGATATAAGGGCATAATAGTTAATTTGGCCACATGTCAATTT-TTATCATATAAT-A
439 CGTAATTATGATATAAGAGAATAATAGTTCATTTGGCTACATGTCAATTTCTTATCATATAATGA
*
17360724 AAAAGGTCATTTTGG
504 AAAAAGTCATTTTGG
* ** * * * *** * * * *
17360739 TAATTTCTTGGGGGATTTTTTAGTAAATAATTATAAGAGATGGGTATTTTCATAATTATGATATG
1 TAATTTCATGAAGGACTATTTAGTAAATAATTATAAAAGAAAAGCATTTTTATAATGATGGTATG
* ** * *
17360804 AG-GGCATAATAGTTAATTTGGCCACATGTCAATTTTTTATCATATAATAGAAAGGTCATTTTGG
66 AGAGACATAATAGACAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGGCATTTTGG
* * *
17360868 TAATTTT-T-GAGGGATTTTTTAGTAAATATTTATAAGAG-ATGGGTATTTTCATAAT-T-GCTA
131 TAATTTTATAGA-GAATTATTTAGTAAATATTTATAAGAGAATGAGTATTTTCATAATATGGC-A
* * * * *
17360928 TTTAAGAGAATAGTAGTTCATTTGGCCACATGTCAATTTCTTATTATATAATAC-AAAATGG-TA
194 -TTAAG-GCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATAT-A-ACGAAAA-GGAAA
* * * * * * *** *
17360991 TTTTGGTAATTTCATAAGCA-ACTATTTAGTAAATAATTATAGGA-AAAGAGCATTTTCGTAGTT
254 TTTTAGTAATTTCAT-TGGAGATTATTTAGTAAATAATGATAAGAGAAAGAATGTTTTCGTAATT
* * * * * *
17361054 ATGGTATGAAGACATAATAGTCCATTTGCCCACATGTCAATTTCTAAGCATATAATGGAAAGG-A
318 ATGATATG-AGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGTA
** ** * ** * * *
17361118 TATTTTTGTAATTTAATAAGTAATTATTTAGTAAATAATTATAAGAAAGGGGTATTTTCGTAATT
382 -ATTTTAATAATTTCTTGAGGGATTATTTAGCAAATAATTATAAGAAATGAGTATTTTCGTAATT
* * * * * * * *
17361183 ATCG-TATAAGGGCATAATAGTCCATTTGG-TAATATGTGAATTTCTGATCATATAATGGAAAGA
446 AT-GATATAAGAGAATAATAGTTCATTTGGCT-ACATGTCAATTTCTTATCATATAATGAAAAAA
17361246 G-CATTTTGG
509 GTCATTTTGG
* * * *
17361255 TAATTTCATG-GGAGATTATTTAGTAAATAATTATAAGAG-AATG-ATATTTTCATAATGATGGT
1 TAATTTCATGAAG-GACTATTTAGTAAATAATTATAAAAGAAAAGCAT-TTTT-ATAATGATGGT
* *
17361317 ATGAGAGA-ATAATAGACAATTTGGCCACATTTCAATTTCTTGTCATATAATAGAAAGGGCATTT
63 ATGAGAGACATAATAGACAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGGCATTT
* * * *
17361381 TGGTAATTTTTTAGAG-ATAATTTAGTAAATATTTATAAGAGAAAGAGTA-TTACAGTAATTATG
128 TGGTAATTTTATAGAGAATTATTTAGTAAATATTTATAAGAGAATGAGTATTTTCA-TAA-TATG
* ** *
17361444 GTACGAAGGCATAATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAACGAAAAGGAAATT
191 GCATTAAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACGAAAAGGAAATT
* * * * *
17361509 TTAGTGATTTCATTGGGGATTATTTAGTAAATGATGATAACAG-AAGAAATGTTTTTGTAATTAT
256 TTAGTAATTTCATTGGAGATTATTTAGTAAATAATGATAAGAGAAAG-AATGTTTTCGTAATTAT
* * * * *
17361573 GATATGTAGGCATAATAGTTAATTTGGCTACATGTCAATTTTTTATCATATAATAGAAAGGTCAT
320 GATATG-AGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGTAAT
* * * *
17361638 TTTGATAATTTCTTGAGGGATTTTTTAGCAAATAATTATAAGAGATGAATATTTTCGTAATTATG
384 TTTAATAATTTCTTGAGGGATTATTTAGCAAATAATTATAAGAAATGAGTATTTTCGTAATTATG
* * * * * * * ** *
17361703 ACATGAGAGAATAATAGTTCATTTAGCTATATGTCTACTTT-TTATTATATAATGGAAAGGGTAA
449 ATATAAGAGAATAATAGTTCATTTGGCTACATGTC-AATTTCTTATCATATAATGAAAAAAGTCA
17361767 TTTT-G
513 TTTTGG
* * * *
17361772 TAATTTCAT-AAGCACCTATTTAGTAAATAATTGTAAAAGAAAAGCATTTTTGTAATTATGGTAT
1 TAATTTCATGAAGGA-CTATTTAGTAAATAATTATAAAAGAAAAGCATTTTTATAATGATGGTAT
* * * * * * * * *
17361836 GAG-GACTTAGTAGTCTATTTGCCCACATATCAATTTCTTATCATATAATAAAAAGGGTATTTTT
65 GAGAGACATAATAGACAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGGCATTTTG
*
17361900 GTAATTTTATA-AGTAATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTCATAATATGGCA
130 GTAATTTTATAGAG-AATTATTTAGTAAATATTTATAAGAGAATGAGTATTTTCATAATATGGCA
* * ** * * * *
17361964 -TAAGGGCGTAAGAGTCCATTTGGTAACATGTTAATTTCTTATCATATAATGGAAA-GAGCATTT
194 TTAA-GGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACGAAAAGGA-AATTT
* * * * * * * * *
17362027 TAGTAATTTCATAGGAGATTATTTAGTAAATAGTTATAAGTGAATG-ATATTTTCATAATGATGG
257 TAGTAATTTCATTGGAGATTATTTAGTAAATAATGATAAGAGAAAGAATGTTTTCGTAATTATGA
* * * * *
17362091 TATGAGTGAATAAGAGTCAATTTGGTCACATGTCAATTTCTTGTCATATAATAGAAAG
322 TATGAG-GCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAG
17362149 TGGTATTTTT
Statistics
Matches: 2300, Mismatches: 518, Indels: 289
0.74 0.17 0.09
Matches are distributed among these distances:
512 4 0.00
513 6 0.00
514 104 0.05
515 318 0.14
516 547 0.24
517 732 0.32
518 246 0.11
519 138 0.06
520 190 0.08
521 7 0.00
522 6 0.00
523 2 0.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (518 bp):
TAATTTCATGAAGGACTATTTAGTAAATAATTATAAAAGAAAAGCATTTTTATAATGATGGTATG
AGAGACATAATAGACAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGGCATTTTGG
TAATTTTATAGAGAATTATTTAGTAAATATTTATAAGAGAATGAGTATTTTCATAATATGGCATT
AAGGCATAATAGTCCATTTGGCCACATGTCAATTTCTTATCATATAACGAAAAGGAAATTTTAGT
AATTTCATTGGAGATTATTTAGTAAATAATGATAAGAGAAAGAATGTTTTCGTAATTATGATATG
AGGCATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAGGTAATTTTAATA
ATTTCTTGAGGGATTATTTAGCAAATAATTATAAGAAATGAGTATTTTCGTAATTATGATATAAG
AGAATAATAGTTCATTTGGCTACATGTCAATTTCTTATCATATAATGAAAAAAGTCATTTTGG
Found at i:17362711 original size:130 final size:130
Alignment explanation
Indices: 17362572--17362840 Score: 287
Period size: 130 Copynumber: 2.1 Consensus size: 130
17362562 GGATGATTGG
* * * * **
17362572 GTAAGTAATTATAAGA-GAAGGGGCATTTTCATAATTATGGCATGAGGT-CATAATAGTTTA-TC
1 GTAAATAATTATAAGACAAAGCGGAATTTT-ATAATTATGGCATGA-GTACATAATAGTCAACT-
* * * * *
17362634 TGGCTACATGTCAATTTCTTATCATATATTAGATAA-GGTATTTTGGCAATTTCATAG-GCGATA
63 TGACCACAAGTCAATTTCTTATCATATAAT-GAAAATGGTATTTTGGCAATTTCATAGAG-GATA
17362697 ATTTA
126 ATTTA
* * * *
17362702 GTAAATAATTATTAGACAAAGCGTAATTTTATAATTATGGTATGAGTACATAGTAGTCAACTTGA
1 GTAAATAATTATAAGACAAAGCGGAATTTTATAATTATGGCATGAGTACATAATAGTCAACTTGA
* * * *
17362767 CCACAAGTCAATTTCTTATCATATAATGAAAATGGTATTTTGGTAATTTGATTGAGGATTATTTA
66 CCACAAGTCAATTTCTTATCATATAATGAAAATGGTATTTTGGCAATTTCATAGAGGATAATTTA
17362832 GTAAATAAT
1 GTAAATAAT
17362841 CGTATGTATG
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
129 6 0.05
130 98 0.85
131 11 0.10
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (130 bp):
GTAAATAATTATAAGACAAAGCGGAATTTTATAATTATGGCATGAGTACATAATAGTCAACTTGA
CCACAAGTCAATTTCTTATCATATAATGAAAATGGTATTTTGGCAATTTCATAGAGGATAATTTA
Found at i:17363141 original size:131 final size:131
Alignment explanation
Indices: 17362907--17363207 Score: 326
Period size: 131 Copynumber: 2.3 Consensus size: 131
17362897 ATAGAAATGA
* **
17362907 TATTTTTGTAATTATGATATGATGGCATAATAGTCAATTTGAATATGTGTCAACTTTTTTATCAT
1 TATTTTTGTAATTATGATATGAAGGCATAATAGTCAATTTGAATACATGTCAACTTTTTTATCAT
* * * *
17362972 ATATTGGAATGGGTATTTTGGTACTTTCATTAAGGATTATTTAGTAAATGATGATAAGAGAAGGG
66 ATATTGGAATGGGTATTTCGGTAATTTCATTAAGGATTATTTAGCAAATAATGATAAGAGAAGGG
17363037 G
131 G
* * * *
17363038 TATTTTTGTAATTATGATCTGAAGGCATAATAGTTAATTTG-GTCACATGTCAATTTTTTTATCA
1 TATTTTTGTAATTATGATATGAAGGCATAATAGTCAATTTGAAT-ACATGTCAACTTTTTTATCA
** *
17363102 TAT-TATGGAAT-GGTCATTTCGGTAATTTC-TTGGGGGATTATTTAGCAAATAATTATAAGAG-
65 TATAT-TGGAATGGGT-ATTTCGGTAATTTCATT-AAGGATTATTTAGCAAATAATGATAAGAGA
* *
17363163 ATGGA
127 AGGGG
** * * *
17363168 TATTTTCATAATTACGATATGATA-GAATAATAGTCCATTT
1 TATTTTTGTAATTATGATATGA-AGGCATAATAGTCAATTT
17363208 AGCCACATGT
Statistics
Matches: 142, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
130 41 0.29
131 101 0.71
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (131 bp):
TATTTTTGTAATTATGATATGAAGGCATAATAGTCAATTTGAATACATGTCAACTTTTTTATCAT
ATATTGGAATGGGTATTTCGGTAATTTCATTAAGGATTATTTAGCAAATAATGATAAGAGAAGGG
G
Found at i:17363567 original size:131 final size:129
Alignment explanation
Indices: 17362986--17363594 Score: 419
Period size: 131 Copynumber: 4.7 Consensus size: 129
17362976 TGGAATGGGT
* * * * **
17362986 ATTTTGGTACTTTCATTAAGGATTATTTAGTAAATGATGATAAGAGAAGGGGTATTTTTGTAATT
1 ATTTTGGTAATTTC-TTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT
* ** * * * * * **
17363051 ATGATCTGA-AGGCATAATAGTTAATTTGGTCACATGTCAATTTTTTTATCATATTATGGAATGG
65 ATGATATGAGA-GCATAATAGTCCATTTGCTCACATGTCAA-TTTCTTATCATCTAATAGAAAAG
*
17363115 TC
128 AC
* * * * *
17363117 ATTTCGGTAATTTCTTGGGGGATTATTTAGCAAATAATTATAAGAG-ATGGATATTTTCATAATT
1 ATTTTGGTAATTTCTT-AGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATT
* * * * * * **
17363181 ACGATATGATAGAATAATAGTCCATTTAGC-CACATGTCAATTTCCTATC-GCATAATGGAAGTG
65 ATGATATGAGAGCATAATAGTCCATTT-GCTCACATGTCAATTTCTTATCATC-TAATAGAAAAG
**
17363244 GT
128 AC
** * * * * * *
17363246 ATTTTTATAATTTCATAGGTAATTATTTACTAAATAATTATAAGTGAAAAGGGTTATGTTCATAA
1 ATTTTGGTAATTTCTTAGG-GATTATTTAGTAAATAATTATAA--GAGAAGGGGTATTTTCATAA
** * * * * * *
17363311 TTATGGCATGAGGGCATGATAGTCCATTTGGTAACATGTTAATTTCTTATCA--TAAAAGATAAA
63 TTATGATATGAGAGCATAATAGTCCATTTGCTCACATGTCAATTTCTTATCATCTAATAGA-AAA
*
17363374 GAT
127 GAC
** * * ***
17363377 ATTTTCATTTTAATTT-TATTGGAGATTATTTAGTAAATAATTATAAGGGAA-TAATATTTTCAT
1 A-TTT--TGGTAATTTCT-TAGG-GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCAT
* * *
17363440 AATGATGGTATGAGAGAATAATAG-CCAATTTGCTCACATGTCAATTTCTTATCATCTAATAGAA
61 AATTATGATATGAGAGCATAATAGTCC-ATTTGCTCACATGTCAATTTCTTATCATCTAATAGAA
*
17363504 AAGCC
125 AAGAC
* *
17363509 ATTTTGGTAATTTTCTTAGGGATTATTTAGTAAATAGTTATAAGAGAAGGGGTAATTTT-GTAAT
1 ATTTTGGTAA-TTTCTTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGT-ATTTTCATAAT
*
17363573 TATGATATGAAAGCATAATAGT
64 TATGATATGAGAGCATAATAGT
17363595 TAATTTGGTC
Statistics
Matches: 365, Mismatches: 90, Indels: 46
0.73 0.18 0.09
Matches are distributed among these distances:
128 2 0.01
129 77 0.21
130 81 0.22
131 105 0.29
132 62 0.17
133 6 0.02
134 32 0.09
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (129 bp):
ATTTTGGTAATTTCTTAGGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTA
TGATATGAGAGCATAATAGTCCATTTGCTCACATGTCAATTTCTTATCATCTAATAGAAAAGAC
Found at i:17364470 original size:130 final size:129
Alignment explanation
Indices: 17364306--17364554 Score: 317
Period size: 130 Copynumber: 1.9 Consensus size: 129
17364296 AAAGAAGAGA
** **
17364306 ATTTTGTAATTATAGTATGAGGACATAATAGTCCATTTGGTTGCACG-TAAATTTTTTATCATAT
1 ATTTTGTAATTATAGTACAAGGACATAATAGTCCATTTGGTAACACGCT-AATTTTTTATCATAT
** *
17364370 AATAGAAATGATATTTCT-GTAATTTAATAGGTA-ATTATTTAGTA-ATTAATTATAAAAAAATG
65 AATAGAAACAATATTT-TAATAATTTAATAGG-AGATTATTTAGTATA-TAATTATAAAAAAATG
17364432 AGT
127 AGT
* * *
17364435 ATTTTCGTAATTATAGTGCAAGGGCATAATAGTCCATTTGGTAACATGCTAATTTTTTATCATAT
1 ATTTT-GTAATTATAGTACAAGGACATAATAGTCCATTTGGTAACACGCTAATTTTTTATCATAT
* *
17364500 AATGGAAACAATATTTTAATAATTTCATAGGAGATTATTTAGTATATAATTATAA
65 AATAGAAACAATATTTTAATAATTTAATAGGAGATTATTTAGTATATAATTATAA
17364555 GAGAAGAATA
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
129 7 0.07
130 94 0.91
131 2 0.02
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (129 bp):
ATTTTGTAATTATAGTACAAGGACATAATAGTCCATTTGGTAACACGCTAATTTTTTATCATATA
ATAGAAACAATATTTTAATAATTTAATAGGAGATTATTTAGTATATAATTATAAAAAAATGAGT
Found at i:17365810 original size:63 final size:64
Alignment explanation
Indices: 17365683--17365857 Score: 175
Period size: 63 Copynumber: 2.8 Consensus size: 64
17365673 TAATCCATGA
* **
17365683 ATTATTCAAA-ATATTTTTAGCCAAAAAACGCCTTCAATAACCCCATTCAATATTTTGTAAGAG
1 ATTATTCAAAGATATTTTTAGCCAAAAAACGCCTTCAATAACCCCATTCAAAAAATTGTAAGAG
*
17365746 ATTATTCAAAGCAT-TTTTTAG-CAAAAAACGCCTTCAATAATCCCA-TCATAAAAATTG-AAGG
1 ATTATTCAAAG-ATATTTTTAGCCAAAAAACGCCTTCAATAACCCCATTCA-AAAAATTGTAA-G
17365807 AG
63 AG
* * * * * * *
17365809 ATTATTTAAAG-TGTTTTTGGCC-ATAAACACCTTGACTAACCCCATTCAA
1 ATTATTCAAAGATATTTTTAGCCAAAAAACGCCTTCAATAACCCCATTCAA
17365858 TTTTTCCTAA
Statistics
Matches: 94, Mismatches: 11, Indels: 15
0.78 0.09 0.12
Matches are distributed among these distances:
61 1 0.01
62 29 0.31
63 55 0.59
64 7 0.07
65 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (64 bp):
ATTATTCAAAGATATTTTTAGCCAAAAAACGCCTTCAATAACCCCATTCAAAAAATTGTAAGAG
Found at i:17369467 original size:3 final size:3
Alignment explanation
Indices: 17369461--17369491 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
17369451 CATCATCATC
17369461 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
17369492 GGCATAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:17371864 original size:16 final size:15
Alignment explanation
Indices: 17371835--17371868 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
17371825 ACCTCCTTTC
*
17371835 TTTTCTTTTTTTTTT
1 TTTTCTTTTGTTTTT
17371850 TTTTGCTTTTGTTTTT
1 TTTT-CTTTTGTTTTT
17371866 TTT
1 TTT
17371869 GTAACATCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.88
Consensus pattern (15 bp):
TTTTCTTTTGTTTTT
Found at i:17372232 original size:70 final size:70
Alignment explanation
Indices: 17371993--17372203 Score: 194
Period size: 70 Copynumber: 3.0 Consensus size: 70
17371983 CATGTCCGAG
* * *** * * * *
17371993 AATAATAATGATCGAAATTGAACCGTGAGTCAAAAAATGAAA-ACAATTGGGATTAAACCACGAG
1 AATAATAATGATCAAAATTAAACTACGAGTCAAAAACT-AAAGACAATAGGGATTGAACCATGAG
17372057 TCAAGAA
65 TC-AGAA
* * * * * * * ** *
17372064 AA-AATGATGACCGAAATTGAACCACAAGTCAGAAACTAAAGATGATAGGGATTGAATCATGAGT
1 AATAATAATGATCAAAATTAAACTACGAGTCAAAAACTAAAGACAATAGGGATTGAACCATGAGT
*
17372128 CAGAG
66 CAGAA
*
17372133 AATAATAATGATCAAAATTAAACTGCGAGTCAAAAACTAAAGACAATAGGGATTGAACCATGAGT
1 AATAATAATGATCAAAATTAAACTACGAGTCAAAAACTAAAGACAATAGGGATTGAACCATGAGT
17372198 CA-AA
66 CAGAA
17372202 AA
1 AA
17372204 CTGAAAATGA
Statistics
Matches: 112, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
69 11 0.10
70 99 0.88
71 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (70 bp):
AATAATAATGATCAAAATTAAACTACGAGTCAAAAACTAAAGACAATAGGGATTGAACCATGAGT
CAGAA
Found at i:17372258 original size:35 final size:34
Alignment explanation
Indices: 17372219--17372312 Score: 98
Period size: 35 Copynumber: 2.7 Consensus size: 34
17372209 AATGACTGAG
*
17372219 ATTAAACTACGAGTTAGAGAATAACAATGATCGAA
1 ATTAAACCACGAGTTAGAGAATAA-AATGATCGAA
* * * * * * *
17372254 ATTAAACCACAAATCAAAAAATGAAAATGATTGAG
1 ATTAAACCACGAGTTAGAGAAT-AAAATGATCGAA
17372289 ATTAAACCACGAGTTAGAGAATAA
1 ATTAAACCACGAGTTAGAGAATAA
17372313 TGACAACCGA
Statistics
Matches: 45, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
34 2 0.04
35 41 0.91
36 2 0.04
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (34 bp):
ATTAAACCACGAGTTAGAGAATAAAATGATCGAA
Found at i:17372362 original size:70 final size:70
Alignment explanation
Indices: 17372184--17372364 Score: 229
Period size: 70 Copynumber: 2.6 Consensus size: 70
17372174 GACAATAGGG
* * * **
17372184 ATTGAACCATGAGTCAAAAACTGAAAATGACTGAGATTAAACTACGAGTTAGAGAATAACAATGA
1 ATTGAACCATGAGTCAAAAAATGAAAATGATTGAGATTAAACCACGAGTTAGAGAATAACAACAA
*
17372249 TCGAA
66 CCGAA
* ** * **
17372254 ATTAAACCACAAATCAAAAAATGAAAATGATTGAGATTAAACCACGAGTTAGAGAATAATGACAA
1 ATTGAACCATGAGTCAAAAAATGAAAATGATTGAGATTAAACCACGAGTTAGAGAATAACAACAA
17372319 CCGAA
66 CCGAA
*
17372324 ATTGAACCATGAGTCAAAAAATGAAAACGATT-AGGATTAAA
1 ATTGAACCATGAGTCAAAAAATGAAAATGATTGA-GATTAAA
17372365 TAATGAGTCA
Statistics
Matches: 93, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
69 1 0.01
70 92 0.99
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (70 bp):
ATTGAACCATGAGTCAAAAAATGAAAATGATTGAGATTAAACCACGAGTTAGAGAATAACAACAA
CCGAA
Found at i:17372373 original size:245 final size:244
Alignment explanation
Indices: 17371916--17372470 Score: 620
Period size: 245 Copynumber: 2.3 Consensus size: 244
17371906 GATAACTGAT
* * * *
17371916 TCAAAAAGTAAAGACGATAGGGATTGAACTATGAGTCAGAAAAATAAAAATGATTGAGATTAAA-
1 TCAAAAACTAAAGACAATAGGGATTGAACTATGAGTCA-AAAACTGAAAATGA-TGAGATTAAAC
* * * *** * *
17371980 TCACATGTCCGAGAATAATAATGATCGAAATTGAACCGTGAGTCAAAAAATGAAAACAATTGGGA
64 TCACATGTCAGAGAATAACAATGATCGAAATTAAACCACAAATCAAAAAATGAAAACAATTGAGA
** * * *
17372045 TTAAACCACGAGTCAAGAAAAAATGATGACCGAAATTGAACCACAAGTCAGAAACTAAAGATGAT
129 TTAAACCACGAGTCAAGAAAAAATGACAACCGAAATTGAACCACAAGTCAAAAAATAAAGACGAT
* * *
17372110 AGGGATTGAATCATGAGTCAGAGAATAATAATGATCAAAATTAAACTGC-GAG
194 AGGGATTAAATAATGAGTCAGAGAATAATAATGACCAAAATTAAA-T-CAGAG
*
17372162 TCAAAAACTAAAGACAATAGGGATTGAACCATGAGTCAAAAACTGAAAATGACTGAGATTAAACT
1 TCAAAAACTAAAGACAATAGGGATTGAACTATGAGTCAAAAACTGAAAATGA-TGAGATTAAACT
* **
17372227 -ACGA-GTTAGAGAATAACAATGATCGAAATTAAACCACAAATCAAAAAATGAAAATGATTGAGA
65 CAC-ATGTCAGAGAATAACAATGATCGAAATTAAACCACAAATCAAAAAATGAAAACAATTGAGA
* * **
17372290 TTAAACCACGAGT-TAGAGAATAATGACAACCGAAATTGAACCATGAGTCAAAAAATGAAA-ACG
129 TTAAACCACGAGTCAAGA-AAAAATGACAACCGAAATTGAACCACAAGTCAAAAAAT-AAAGACG
* * * * *
17372353 ATTA-GGATTAAATAATGAGTCAGGGAATAATGATGACCATAATTGAATCATTAG
192 A-TAGGGATTAAATAATGAGTCAGAGAATAATAATGACCAAAATTAAATCA-GAG
* * * * *
17372407 TTAGAAACTAAAGACAACAGGGATTGAACTGTTAGTCAAAAACTGAAAATGATCGAGATTAAAC
1 TCAAAAACTAAAGACAATAGGGATTGAACTATGAGTCAAAAACTGAAAATGAT-GAGATTAAAC
17372471 CATGATTCAA
Statistics
Matches: 261, Mismatches: 40, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
243 1 0.00
244 5 0.02
245 213 0.82
246 42 0.16
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (244 bp):
TCAAAAACTAAAGACAATAGGGATTGAACTATGAGTCAAAAACTGAAAATGATGAGATTAAACTC
ACATGTCAGAGAATAACAATGATCGAAATTAAACCACAAATCAAAAAATGAAAACAATTGAGATT
AAACCACGAGTCAAGAAAAAATGACAACCGAAATTGAACCACAAGTCAAAAAATAAAGACGATAG
GGATTAAATAATGAGTCAGAGAATAATAATGACCAAAATTAAATCAGAG
Found at i:17372397 original size:70 final size:68
Alignment explanation
Indices: 17372184--17372399 Score: 218
Period size: 70 Copynumber: 3.1 Consensus size: 68
17372174 GACAATAGGG
* * **
17372184 ATTGAACCATGAGTCAAAAACTGAAAATGACTGAGATTAAACTACGAGTTAGAGAATAACAATGA
1 ATTGAACCATGAGTCAAAAAATGAAAATGATTGAGATTAAA-TACGAGTTAGAGAATAATGATGA
*
17372249 TCGAA
65 -CCAA
* ** * * **
17372254 ATTAAACCACAAATCAAAAAATGAAAATGATTGAGATTAAACCACGAGTTAGAGAATAATGACAA
1 ATTGAACCATGAGTCAAAAAATGAAAATGATTGAGATTAAA-TACGAGTTAGAGAATAATGATGA
17372319 CCGAA
65 CC-AA
* * * *
17372324 ATTGAACCATGAGTCAAAAAATGAAAACGATT-AGGATTAAATAATGAGTCAGGGAATAATGATG
1 ATTGAACCATGAGTCAAAAAATGAAAATGATTGA-GATTAAAT-ACGAGTTAGAGAATAATGATG
17372388 ACCATA
64 ACCA-A
17372394 ATTGAA
1 ATTGAA
17372400 TCATTAGTTA
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
69 3 0.03
70 116 0.97
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (68 bp):
ATTGAACCATGAGTCAAAAAATGAAAATGATTGAGATTAAATACGAGTTAGAGAATAATGATGAC
CAA
Found at i:17372561 original size:105 final size:105
Alignment explanation
Indices: 17372293--17372630 Score: 326
Period size: 105 Copynumber: 3.2 Consensus size: 105
17372283 ATTGAGATTA
* * * * * * *
17372293 AACCACGAGTTAGAGAA-TAATGACAACCGAA-ATTGAACCATGAGTCAAAAAATGAAAACGATT
1 AACCATGAGTTAGA-AACTAAAGACAA-CAAAGATTGAACTATGAGTCAAAAACTGAAAATGATC
* ** * ** *
17372356 AGGATTAAATAATGAGTCAGGGAATAATGATGACCATAATTG
64 AAGATTAAACCATGATTCAAAGAATAATGATGACCAAAATTG
* * ** * * *
17372398 AATCATTAGTTAGAAACTAAAGACAACAGGGATTGAACTGTTAGTCAAAAACTGAAAATGATCGA
1 AACCATGAGTTAGAAACTAAAGACAACAAAGATTGAACTATGAGTCAAAAACTGAAAATGATCAA
* *
17372463 GATTAAACCATGATTCAAAGAACAATGACGACCAAAATTG
66 GATTAAACCATGATTCAAAGAATAATGATGACCAAAATTG
*
17372503 AACCATGAGTTAGAAACTAAAGACAACAAAGATTGAACTACGAGTCAAAAACTGAAAATG-TCCA
1 AACCATGAGTTAGAAACTAAAGACAACAAAGATTGAACTATGAGTCAAAAACTGAAAATGAT-CA
* * *
17372567 AGATTAAACCATAAGTT-AAAGAATAATAATGACCAAAGTTG
65 AGATTAAACCATGA-TTCAAAGAATAATGATGACCAAAATTG
* * *
17372608 CACCGCT-AGTCAGAAACTAAAGA
1 AACC-ATGAGTTAGAAACTAAAGA
17372631 TGACAGGGAT
Statistics
Matches: 189, Mismatches: 39, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
104 4 0.02
105 182 0.96
106 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (105 bp):
AACCATGAGTTAGAAACTAAAGACAACAAAGATTGAACTATGAGTCAAAAACTGAAAATGATCAA
GATTAAACCATGATTCAAAGAATAATGATGACCAAAATTG
Found at i:17372642 original size:105 final size:104
Alignment explanation
Indices: 17372387--17372665 Score: 310
Period size: 105 Copynumber: 2.7 Consensus size: 104
17372377 GAATAATGAT
* * **
17372387 GACCATAATTGAATCATTAGTTAGAAACTAAAGACAACAGGGATTGAACTGTTAGTCAAAAACTG
1 GACCAAAATTGAACCA-TAGTTAGAAACTAAAGACAACAGGGATTGAACTGCAAGTCAAAAACTG
* * *
17372452 AAAATGATCGAGATTAAACCATGATTCAAAGAACAATGAC
65 AAAATGATCAAGATTAAACCATAATTCAAAGAACAATAAC
** * *
17372492 GACCAAAATTGAACCATGAGTTAGAAACTAAAGACAACAAAGATTGAACTACGAGTCAAAAACTG
1 GACCAAAATTGAACCAT-AGTTAGAAACTAAAGACAACAGGGATTGAACTGCAAGTCAAAAACTG
* *
17372557 AAAATG-TCCAAGATTAAACCATAAGTT-AAAGAATAATAAT
65 AAAATGAT-CAAGATTAAACCATAA-TTCAAAGAACAATAAC
* * * * ** * *
17372597 GACCAAAGTTGCACCGCTAGTCAGAAACTAAAGATGACAGGGATTGAATTGCAAGTCAAAAAGTG
1 GACCAAAATTGAACC-ATAGTTAGAAACTAAAGACAACAGGGATTGAACTGCAAGTCAAAAACTG
17372662 AAAA
65 AAAA
17372666 CAATTGAAAT
Statistics
Matches: 146, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
104 2 0.01
105 141 0.97
106 3 0.02
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (104 bp):
GACCAAAATTGAACCATAGTTAGAAACTAAAGACAACAGGGATTGAACTGCAAGTCAAAAACTGA
AAATGATCAAGATTAAACCATAATTCAAAGAACAATAAC
Found at i:17372785 original size:70 final size:70
Alignment explanation
Indices: 17372711--17373204 Score: 284
Period size: 70 Copynumber: 7.1 Consensus size: 70
17372701 ACTAGAATTG
* * *
17372711 AACCATGAATCCA-AAAATAAAAATGATCAAAATTAAACCACT-AGTCAAAGAATAAAAATGATT
1 AACCATGAAT-CAGAAAATAAAAACGATCAAAATTAAACCA-TGAGTCAAAAAATAAAAATGATC
17372774 GGGATTA
64 GGGATTA
* * ** ** * * * *
17372781 AACCATTAGTCAGGGAATAATGACAACCAAAATTGAACCATGAATCAAAAAATAAAAATGATCGG
1 AACCATGAATCAGAAAATAAAAACGATCAAAATTAAACCATGAGTCAAAAAATAAAAATGATCGG
17372846 GATTA
66 GATTA
* * * * *** *
17372851 AACCAT-AAGTCAGAAAATAAGAACAAT-AAGGATTAAACCATGAGTCAGAAAATATTGATGACC
1 AACCATGAA-TCAGAAAATAAAAACGATCAA-AATTAAACCATGAGTCAAAAAATAAAAATGATC
*** **
17372914 AAAATCG
64 GGGATTA
* * * ** * *
17372921 AACTACGAATCAAAAAATAAAAACGATCAAAATTAAACCACAAGTCAGAGAATAAAAATGA-CAG
1 AACCATGAATCAGAAAATAAAAACGATCAAAATTAAACCATGAGTCAAAAAATAAAAATGATC-G
*
17372985 AGATTA
65 GGATTA
* * ** * * * * * * *
17372991 AACCATTAATCAAAAAATAATGATGATCAAAATTGAACCACGAATCAAAAAATGAAAA-CAACTG
1 AACCATGAATCAGAAAATAAAAACGATCAAAATTAAACCATGAGTCAAAAAATAAAAATGATC-G
17373055 GGATTA
65 GGATTA
** * * * * * * * * * *
17373061 AA-CAACAAGTTAGAAAATGAAAATGATCAAGATTAAATCATAAGTCAGAGAATAAACATGATCA
1 AACCATGAA-TCAGAAAATAAAAACGATCAAAATTAAACCATGAGTCAAAAAATAAAAATGATCG
** *
17373125 AAATTG
65 GGATTA
* * * * *
17373131 AACCACGAGTCAGAAAATGAAAACGATC-GAATTAAACTATGAGTCAAAAAATAAAAATGATCGG
1 AACCATGAATCAGAAAATAAAAACGATCAAAATTAAACCATGAGTCAAAAAATAAAAATGATCGG
17373195 GATTA
66 GATTA
17373200 AACCA
1 AACCA
17373205 CAAGTCAAAG
Statistics
Matches: 310, Mismatches: 103, Indels: 23
0.71 0.24 0.05
Matches are distributed among these distances:
69 46 0.15
70 255 0.82
71 9 0.03
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19
Consensus pattern (70 bp):
AACCATGAATCAGAAAATAAAAACGATCAAAATTAAACCATGAGTCAAAAAATAAAAATGATCGG
GATTA
Found at i:17372832 original size:105 final size:104
Alignment explanation
Indices: 17372706--17373204 Score: 409
Period size: 105 Copynumber: 4.8 Consensus size: 104
17372696 TGATGACTAG
* * * *
17372706 AATTGAACCATGAATCCAAAAATAAAAATGATCAAAATTAAACCACTAGTCAAAGAATAAAAATG
1 AATTGAACCACGAATCAAAAAATAAAAACGATCAGAATTAAACCACTAGTCAAA-AATAAAAATG
* **
17372771 ATTGGGATTAAACCATTAGTCAGGGAATAATGACAACCAA
65 ATAGGGATTAAACCATTAGTCAGAAAATAATGACAACCAA
* * * * * *
17372811 AATTGAACCATGAATCAAAAAATAAAAATGATCGGGATTAAACCA-TAAGTCAGAAAATAAGAAC
1 AATTGAACCACGAATCAAAAAATAAAAACGATCAGAATTAAACCACT-AGTCA-AAAATAAAAAT
* * * * **
17372875 AATAAGGATTAAACCATGAGTCAGAAAATATTGATGACCAA
64 GATAGGGATTAAACCATTAGTCAGAAAATAATGACAACCAA
* * * * *
17372916 AATCGAACTACGAATCAAAAAATAAAAACGATCAAAATTAAACCACAAGTCAGAGAATAAAAATG
1 AATTGAACCACGAATCAAAAAATAAAAACGATCAGAATTAAACCACTAGTCA-AAAATAAAAATG
* * * * ** *
17372981 ACAGAGATTAAACCATTAATCAAAAAATAATGATGATCAA
65 ATAGGGATTAAACCATTAGTCAGAAAATAATGACAACCAA
* * * * * * * *
17373021 AATTGAACCACGAATCAAAAAATGAAAAC-AACTGGGATTAAACAACAAGTTAGAAAATGAAAAT
1 AATTGAACCACGAATCAAAAAATAAAAACGATC-AGAATTAAACCACTAGTCA-AAAATAAAAAT
* * * * *
17373085 GATCA-AGATTAAATCATAAGTCAGAGAATAA--ACATGATCAA
64 GAT-AGGGATTAAACCATTAGTCAGAAAATAATGACA--ACCAA
* * * *
17373126 AATTGAACCACGAGTCAGAAAATGAAAACGATC-GAATTAAACTA-TGAGTCAAAAAATAAAAAT
1 AATTGAACCACGAATCAAAAAATAAAAACGATCAGAATTAAACCACT-AGTC-AAAAATAAAAAT
*
17373189 GATCGGGATTAAACCA
64 GATAGGGATTAAACCA
17373205 CAAGTCAAAG
Statistics
Matches: 318, Mismatches: 65, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
103 1 0.00
104 37 0.12
105 275 0.86
106 5 0.02
ACGTcount: A:0.53, C:0.13, G:0.14, T:0.19
Consensus pattern (104 bp):
AATTGAACCACGAATCAAAAAATAAAAACGATCAGAATTAAACCACTAGTCAAAAATAAAAATGA
TAGGGATTAAACCATTAGTCAGAAAATAATGACAACCAA
Found at i:17373211 original size:35 final size:35
Alignment explanation
Indices: 17372723--17373225 Score: 221
Period size: 35 Copynumber: 14.4 Consensus size: 35
17372713 CCATGAATCC
* *
17372723 AAAAATAAAAATGATCAAAATTAAACCACTAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
* *** **
17372758 AAGAATAAAAATGATTGGGATTAAACCATTAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
*** ** ** * * * *
17372793 GGGAATAATGACAACCAAAATTGAACCATGAA-TCA
1 AAAAATAAAAATGATCAAGATTAAACCA-CAAGTCA
** *
17372828 AAAAATAAAAATGATCGGGATTAAACCATAAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
* * ** **
17372863 GAAAATAAGAACAAT-AAGGATTAAACCATGAGTCA
1 AAAAATAAAAATGATCAA-GATTAAACCACAAGTCA
* *** * * ** *
17372898 GAAAATATTGATGACCAAAATCGAACTACGAA-TCA
1 AAAAATAAAAATGATCAAGATTAAACCAC-AAGTCA
* *
17372933 AAAAATAAAAACGATCAAAATTAAACCACAAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
* * *
17372968 GAGAATAAAAATGA-CAGAGATTAAACCATTAA-TCA
1 AAAAATAAAAATGATCA-AGATTAAACCA-CAAGTCA
** * *
17373003 AAAAATAATGATGATCAAAATTGAACCACGAA-TCA
1 AAAAATAAAAATGATCAAGATTAAACCAC-AAGTCA
* * * ** * *
17373038 AAAAATGAAAA-CAACTGGGATTAAACAACAAGTTA
1 AAAAATAAAAATGATC-AAGATTAAACCACAAGTCA
* * * *
17373073 GAAAATGAAAATGATCAAGATTAAATCATAAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
* * * * * *
17373108 GAGAATAAACATGATCAAAATTGAACCACGAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
* * * * * **
17373143 GAAAATGAAAACGATCGA-ATTAAACTATGAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
**
17373177 AAAAATAAAAATGATCGGGATTAAACCACAAGTCA
1 AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
* *
17373212 AAGAATAAATATGA
1 AAAAATAAAAATGA
17373226 CCACTAATAT
Statistics
Matches: 336, Mismatches: 118, Indels: 28
0.70 0.24 0.06
Matches are distributed among these distances:
34 37 0.11
35 289 0.86
36 10 0.03
ACGTcount: A:0.54, C:0.13, G:0.14, T:0.19
Consensus pattern (35 bp):
AAAAATAAAAATGATCAAGATTAAACCACAAGTCA
Found at i:17373501 original size:18 final size:18
Alignment explanation
Indices: 17373474--17373539 Score: 105
Period size: 18 Copynumber: 3.7 Consensus size: 18
17373464 CCATCAAACG
*
17373474 ATGTGAATGCAAATGTCA
1 ATGTGAATGCAAATATCA
*
17373492 ATGCGAATGCAAATATCA
1 ATGTGAATGCAAATATCA
*
17373510 ATGTGAATGTAAATATCA
1 ATGTGAATGCAAATATCA
17373528 ATGTGAATGCAA
1 ATGTGAATGCAA
17373540 GAATGGCAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (18 bp):
ATGTGAATGCAAATATCA
Found at i:17373770 original size:42 final size:40
Alignment explanation
Indices: 17373724--17373812 Score: 99
Period size: 42 Copynumber: 2.2 Consensus size: 40
17373714 TTGTGAATAC
*
17373724 AGATGCAAGCAATACAAATGCAAATGTCCTTTTT-TGTGATGT
1 AGATGCAAGCAAGACAAATGCAAAT-T--TTTTTGTGTGATGT
* * * *
17373766 AGATGCAAGTAAGGCAAATGTATATTTTTTTGTGTGATGT
1 AGATGCAAGCAAGACAAATGCAAATTTTTTTGTGTGATGT
17373806 AGATGCA
1 AGATGCA
17373813 CTGGGCTTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 5 0.12
40 15 0.37
41 1 0.02
42 20 0.49
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (40 bp):
AGATGCAAGCAAGACAAATGCAAATTTTTTTGTGTGATGT
Found at i:17374151 original size:67 final size:67
Alignment explanation
Indices: 17374013--17374722 Score: 270
Period size: 67 Copynumber: 10.7 Consensus size: 67
17374003 AGCTAATTTG
* * * * * *
17374013 GGCTTAATATTTCATTGAGGGCTAGTTAATTTGGGCTTAATTTTTTTTTTGAAGACCAACTAATT
1 GGCTTAATATTTCATTGAGGGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTAATC
*
17374078 TG
66 TA
* **
17374080 GGCTTAATATTTCATTG-GGAGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAGA
1 GGCTTAATATTTCATTGAGG-GCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTA-A
17374144 -CTA
64 TCTA
* * * * * * *** * * *
17374147 GGCTTAATATTTCTTTTGAAGGCCAGCTATTTTAGGCTTAATAT-TTT-ATCGGAGGCTAGCTAA
1 GGCTTAATATTTC-ATTGAGGGCTAGCTAATTTGGGCTTAA-ATCTTTCTTTAAAGACCAACTAA
17374210 TC-A
64 TCTA
* * * * * * * * * * ** *
17374213 GGGTTTAAATCTTTCTTTGAAGGCCAGTTAATCTAGGCTT-AATATTTCATTAGGGGACCAGCTA
1 -GGCTT-AATATTTCATTGAGGGCTAGCTAATTTGGGCTTAAATCTTTCTTTA-AAGACCAACTA
*
17374277 ATCTG
63 ATCTA
* ** * * * * * *
17374282 GGCTTAATATTTCATTG-GAGGCTAGTTAAACTAGGCTT--A-CATTCATTAGAGGCTAACTAAT
1 GGCTTAATATTTCATTGAG-GGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTAAT
*
17374343 CTG
65 CTA
* * * * * ** * * *
17374346 GGCTTAATTATTTCTTTGAAGGCCAGCTAATCTGGGCTT-AAT-TTTCATTAGGGGCCAGCTAGT
1 GGCTTAA-TATTTCATTGAGGGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTAAT
* *
17374409 TTG
65 CTA
* ** * * * * * *
17374412 GGCTTAATTCTTTTTTTGAAGGTTAGCTAATCTGGGCTTAAATCTTT-TTTGAAGACTAGCTAAT
1 GGCTTAA-TATTTCATTGAGGGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTAAT
*
17374476 CTG
65 CTA
** * * * * * *
17374479 GGCTTAATATTTCATTGTA-AACAAGCTAAATTGGGCTTAATAT-TTCCTTTAAAGGCCAGCTAT
1 GGCTTAATATTTCATTG-AGGGCTAGCTAATTTGGGCTTAA-ATCTTTCTTTAAAGACCAACTAA
* *
17374542 TTTG
64 TCTA
* * ** * * * * *
17374546 GGCTTAATATTTCATCG-GAGGCTAGTTAATCCGAGCTTGAATCTTTCTTTGAAGGCCAACTCAT
1 GGCTTAATATTTCATTGAG-GGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTAAT
*
17374610 CTT
65 CTA
* * * * * * * *
17374613 GGCTTAATATTTCATTG-GAGGCCAACTAATCTAGGCTT-AATATTTCATTAGAG-CCAGCTAAT
1 GGCTTAATATTTCATTGAG-GGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTAAT
17374675 CTA
65 CTA
* * *
17374678 GGCTTAATATTTCATTGGGGGCCAGCTAATTTGAGCTTAAATCTT
1 GGCTTAATATTTCATTGAGGGCTAGCTAATTTGGGCTTAAATCTT
17374723 ATCCTATATT
Statistics
Matches: 497, Mismatches: 119, Indels: 55
0.74 0.18 0.08
Matches are distributed among these distances:
64 19 0.04
65 74 0.15
66 106 0.21
67 246 0.49
68 49 0.10
69 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (67 bp):
GGCTTAATATTTCATTGAGGGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAGACCAACTAATC
TA
Found at i:17374169 original size:34 final size:32
Alignment explanation
Indices: 17373902--17374706 Score: 226
Period size: 34 Copynumber: 24.3 Consensus size: 32
17373892 TTCACTAGAA
* * *
17373902 GCCAGCTAATCTAGGCTAAAATCTTTCTTTGAAT
1 GCCAGCTAA-CTAGGCT-TAATATTTCTTTGAAG
* * *
17373936 GCTAGCTAA-TATGGGCTTAATATTTC-ATCAGAG
1 GCCAGCTAACTA--GGCTTAATATTTCTTTGA-AG
* * *
17373969 GCCAGCTAAACCT-GGCTT-ACATTT-ATTGGAG
1 GCCAGCT-AA-CTAGGCTTAATATTTCTTTGAAG
* * * *
17374000 GCCAGCTAATTTGGGCTTAATATTTCATTGAGG
1 GCCAGCTAA-CTAGGCTTAATATTTCTTTGAAG
* * * * * *
17374033 GCTAGTTAATTTGGGCTTAATTTTTTTTTTGAAG
1 GCCAGCTAA-CTAGGCTTAA-TATTTCTTTGAAG
* * * * * *
17374067 ACCAACTAATTTGGGCTTAATATTTCATTG-GG
1 GCCAGCTAA-CTAGGCTTAATATTTCTTTGAAG
* * * * *
17374099 AGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAG
1 -GCCAGCTAA-CTAGGCTT-AATATTTCTTTGAAG
*
17374134 GCCAGTTAGACTAGGCTTAATATTTCTTTTGAAG
1 GCCAGCTA-ACTAGGCTTAATATTTC-TTTGAAG
** * *
17374168 GCCAGCTATTTTAGGCTTAATATTT-TATCGGAG
1 GCCAGCTA-ACTAGGCTTAATATTTCT-TTGAAG
* * *
17374201 GCTAGCTAA-TCAGGGTTTAAATCTTTCTTTGAAG
1 GCCAGCTAACT-A-GGCTT-AATATTTCTTTGAAG
* * *
17374235 GCCAGTTAATCTAGGCTTAATATTTCATT-AGGG
1 GCCAGCTAA-CTAGGCTTAATATTTCTTTGA-AG
* * *
17374268 GACCAGCTAATCTGGGCTTAATATTTCATTGGAG
1 G-CCAGCTAA-CTAGGCTTAATATTTCTTTGAAG
* * * *
17374302 GCTAGTTAAACTAGGCTT-ACA-TTCATT-AGAG
1 GCCAGCT-AACTAGGCTTAATATTTCTTTGA-AG
* * *
17374333 GCTAACTAATCTGGGCTTAATTATTTCTTTGAAG
1 GCCAGCTAA-CTAGGCTTAA-TATTTCTTTGAAG
* * *
17374367 GCCAGCTAATCTGGGCTTAAT-TTTCATT-AGGG
1 GCCAGCTAA-CTAGGCTTAATATTTCTTTGA-AG
** * * *
17374399 GCCAGCTAGTTTGGGCTTAATTCTTTTTTTGAAG
1 GCCAGCTA-ACTAGGCTTAA-TATTTCTTTGAAG
** * *
17374433 GTTAGCTAATCTGGGCTTAA-ATCTTTTTTGAAG
1 GCCAGCTAA-CTAGGCTTAATAT-TTCTTTGAAG
* * * *
17374466 ACTAGCTAATCTGGGCTTAATATTTCATTGTAA-
1 GCCAGCTAA-CTAGGCTTAATATTTCTTTG-AAG
* * * * *
17374499 ACAAGCTAAATTGGGCTTAATATTTCCTTTAAAG
1 GCCAGCT-AACTAGGCTTAATATTT-CTTTGAAG
** * * * *
17374533 GCCAGCTATTTTGGGCTTAATATTTCATCGGAG
1 GCCAGCTA-ACTAGGCTTAATATTTCTTTGAAG
* * * *
17374566 GCTAGTTAA-TCCGAGCTTGAATCTTTCTTTGAAG
1 GCCAGCTAACT-AG-GCTT-AATATTTCTTTGAAG
* * * * *
17374600 GCCAACTCATCTTGGCTTAATATTTCATTGGAG
1 GCCAGCT-AACTAGGCTTAATATTTCTTTGAAG
* *
17374633 GCCAACTAATCTAGGCTTAATATTTCATT--AG
1 GCCAGCTAA-CTAGGCTTAATATTTCTTTGAAG
* **
17374664 AGCCAGCTAATCTAGGCTTAATATTTCATTGGGG
1 -GCCAGCTAA-CTAGGCTTAATATTTCTTTGAAG
17374698 GCCAGCTAA
1 GCCAGCTAA
17374707 TTTGAGCTTA
Statistics
Matches: 592, Mismatches: 124, Indels: 111
0.72 0.15 0.13
Matches are distributed among these distances:
30 5 0.01
31 39 0.07
32 77 0.13
33 227 0.38
34 233 0.39
35 8 0.01
36 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (32 bp):
GCCAGCTAACTAGGCTTAATATTTCTTTGAAG
Found at i:17374185 original size:101 final size:101
Alignment explanation
Indices: 17373905--17374722 Score: 498
Period size: 101 Copynumber: 8.2 Consensus size: 101
17373895 ACTAGAAGCC
* * * * * * * * * **
17373905 AGCTAATCTAGGCTAAAATCTTTCTTTGAATGCTAGCTAATATGGGCTTAATATTTCATCAG-AG
1 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAATATTTCTTTTGAAG
* * *
17373969 GCCAGCTAAACCT-GGCTT-ACATTT-ATT-GGAGGCC
66 GCCAGCT-AATCTGGGCTTAATATTTCATTGGGA-GCT
* * * * * * * *
17374003 AGCTAATTTGGGCTT-AATATTTCATTGAGGGCTAGTTAATTTGGGCTTAATTTTTTTTTTGAAG
1 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAATATTTCTTTTGAAG
* * *
17374067 ACCAACTAATTTGGGCTTAATATTTCATTGGGAGCT
66 GCCAGCTAATCTGGGCTTAATATTTCATTGGGAGCT
*
17374103 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAGA-CTAGGCTTAATATTTCTTTTGAA
1 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTA-ATCTGGGCTTAATATTTCTTTTGAA
* * * * *
17374167 GGCCAGCTATTTTAGGCTTAATATTTTA-TCGGAGGCT
65 GGCCAGCTAATCTGGGCTTAATATTTCATTGGGA-GCT
** * * * * * *
17374204 AGCTAATCAGGGTTTAAATCTTTCTTTGAAGGCCAGTTAATCTAGGCTTAATATTTCATTAG-GG
1 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAATATTTCTTTTGAAG
17374268 GACCAGCTAATCTGGGCTTAATATTTCATT-GGAGGCT
66 G-CCAGCTAATCTGGGCTTAATATTTCATTGGGA-GCT
* ** * * * * * **
17374305 AGTTAAACTAGGCTT--A-CATTCATTAGAGGCTAACTAATCTGGGCTTAATTATTTC-TTTGAA
1 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAA-TATTTCTTTTGAA
*
17374366 GGCCAGCTAATCTGGGCTTAAT-TTTCATTAGGG-GCC
65 GGCCAGCTAATCTGGGCTTAATATTTCATT-GGGAGCT
* * * * ** *
17374402 AGCTAGTTTGGGCTTAATTCTTTTTTTGAAGGTTAGCTAATCTGGGCTTAA-ATCTT-TTTTGAA
1 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAATAT-TTCTTTTGAA
* * ** * *
17374465 GACTAGCTAATCTGGGCTTAATATTTCATTGTAAACA
65 GGCCAGCTAATCTGGGCTTAATATTTCATTGGGAGCT
* * * * * * * *
17374502 AGCTAAATTGGGCTTAATAT-TTCCTTTAAAGGCCAGCTATTTTGGGCTTAATATTTC-ATCGGA
1 AGCTAATTTGGGCTTAA-ATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAATATTTCTTTTGAA
* * * * * * * *
17374565 GGCTAGTTAATCCGAGCTTGAATCTTTC-TTTGAAGGCC
65 GGCCAGCTAATCTGGGCTT-AATATTTCATTGGGA-GCT
* * * * ** ** * * *
17374603 AACTCATCTT-GGCTT-AATATTTCATTGGAGGCCAACTAATCTAGGCTTAATATTTCATTAG-A
1 AGCTAAT-TTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAATATTTCTTTTGAA
* * *
17374665 -GCCAGCTAATCTAGGCTTAATATTTCATTGGGGGCC
65 GGCCAGCTAATCTGGGCTTAATATTTCATTGGGAGCT
*
17374701 AGCTAATTTGAGCTTAAATCTT
1 AGCTAATTTGGGCTTAAATCTT
17374723 ATCCTATATT
Statistics
Matches: 558, Mismatches: 129, Indels: 65
0.74 0.17 0.09
Matches are distributed among these distances:
97 59 0.11
98 92 0.16
99 68 0.12
100 154 0.28
101 181 0.32
102 4 0.01
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.38
Consensus pattern (101 bp):
AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAGTTAATCTGGGCTTAATATTTCTTTTGAAG
GCCAGCTAATCTGGGCTTAATATTTCATTGGGAGCT
Found at i:17374707 original size:33 final size:33
Alignment explanation
Indices: 17373902--17374717 Score: 505
Period size: 33 Copynumber: 24.6 Consensus size: 33
17373892 TTCACTAGAA
* * * * *
17373902 GCCAGCTAATCTAGGCTAAAATCTTTCTTTGAAT
1 GCCAGCTAATCTGGGCT-TAATATTTCATTGAAG
* * *
17373936 GCTAGCTAATATGGGCTTAATATTTCA-TCAGAG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGA-AG
* * *
17373969 GCCAGCTAAACCT-GGCTT-ACATTT-ATTGGAG
1 GCCAGCT-AATCTGGGCTTAATATTTCATTGAAG
* *
17374000 GCCAGCTAATTTGGGCTTAATATTTCATTGAGG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
* * * * **
17374033 GCTAGTTAATTTGGGCTTAATTTTTTTTTTGAAG
1 GCCAGCTAATCTGGGCTTAA-TATTTCATTGAAG
* * * *
17374067 ACCAACTAATTTGGGCTTAATATTTCATTG-GG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
* * * * *
17374099 AGCTAGCTAATTTGGGCTTAAATCTTTCTTTAAAG
1 -GCCAGCTAATCTGGGCTT-AATATTTCATTGAAG
* * *
17374134 GCCAGTTAGA-CTAGGCTTAATATTTCTTTTGAAG
1 GCCAGCTA-ATCTGGGCTTAATATTTC-ATTGAAG
* * * * * *
17374168 GCCAGCTATTTTAGGCTTAATATTTTATCGGAG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
* * * * *
17374201 GCTAGCTAATCAGGGTTTAAATCTTTCTTTGAAG
1 GCCAGCTAATCTGGGCTT-AATATTTCATTGAAG
* * *
17374235 GCCAGTTAATCTAGGCTTAATATTTCATT-AGGG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGA-AG
*
17374268 GACCAGCTAATCTGGGCTTAATATTTCATTGGAG
1 G-CCAGCTAATCTGGGCTTAATATTTCATTGAAG
* * * * *
17374302 GCTAGTTAAACTAGGCTT-ACA-TTCATT-AGAG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGA-AG
* * *
17374333 GCTAACTAATCTGGGCTTAATTATTTCTTTGAAG
1 GCCAGCTAATCTGGGCTTAA-TATTTCATTGAAG
*
17374367 GCCAGCTAATCTGGGCTTAAT-TTTCATT-AGGG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGA-AG
* * * **
17374399 GCCAGCTAGTTTGGGCTTAATTCTTTTTTTGAAG
1 GCCAGCTAATCTGGGCTTAA-TATTTCATTGAAG
** **
17374433 GTTAGCTAATCTGGGCTTAA-ATCTTTTTTGAAG
1 GCCAGCTAATCTGGGCTTAATAT-TTCATTGAAG
* *
17374466 ACTAGCTAATCTGGGCTTAATATTTCATTGTAA-
1 GCCAGCTAATCTGGGCTTAATATTTCATTG-AAG
* * * *
17374499 ACAAGCTAAAT-TGGGCTTAATATTTCCTTTAAAG
1 GCCAGCT-AATCTGGGCTTAATATTT-CATTGAAG
* * * *
17374533 GCCAGCTATTTTGGGCTTAATATTTCATCGGAG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
* * * * * *
17374566 GCTAGTTAATCCGAGCTTGAATCTTTCTTTGAAG
1 GCCAGCTAATCTGGGCTT-AATATTTCATTGAAG
* * * *
17374600 GCCAACTCATCTTGGCTTAATATTTCATTGGAG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
* *
17374633 GCCAACTAATCTAGGCTTAATATTTCATT--AG
1 GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
* **
17374664 AGCCAGCTAATCTAGGCTTAATATTTCATTGGGG
1 -GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
* *
17374698 GCCAGCTAATTTGAGCTTAA
1 GCCAGCTAATCTGGGCTTAA
17374718 ATCTTATCCT
Statistics
Matches: 602, Mismatches: 143, Indels: 75
0.73 0.17 0.09
Matches are distributed among these distances:
30 3 0.00
31 40 0.07
32 72 0.12
33 243 0.40
34 240 0.40
35 4 0.01
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (33 bp):
GCCAGCTAATCTGGGCTTAATATTTCATTGAAG
Found at i:17374986 original size:18 final size:18
Alignment explanation
Indices: 17374960--17375026 Score: 125
Period size: 18 Copynumber: 3.7 Consensus size: 18
17374950 TCCATCAAAT
*
17374960 GATGCGAATGCAAATGTC
1 GATGTGAATGCAAATGTC
17374978 GATGTGAATGCAAATGTC
1 GATGTGAATGCAAATGTC
17374996 GATGTGAATGCAAATGTC
1 GATGTGAATGCAAATGTC
17375014 GATGTGAATGCAA
1 GATGTGAATGCAA
17375027 GAATGTCAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (18 bp):
GATGTGAATGCAAATGTC
Found at i:17375235 original size:80 final size:81
Alignment explanation
Indices: 17375044--17375589 Score: 350
Period size: 80 Copynumber: 6.7 Consensus size: 81
17375034 AATGCTTATG
* * *
17375044 TTATAATAAAAATTTATGGAGTATTTGATTGTAATTGTTTTAATTTGTGAATTGTTTTTCATAAC
1 TTATAATAAAAATTAATGGAGTATTTGATTGTAGTTGTTTTAATTTGTCAATTGTTTTTCATAAC
** *
17375109 ACACTAAATTACTACA
66 GTACTCAATTACTACA
*** * * *
17375125 TTATAATAAAAATTAACACAATATTTGATTGTAGTTGTTTTAATTTGTTAATTGTTTTT-ATTAC
1 TTATAATAAAAATTAATGGAGTATTTGATTGTAGTTGTTTTAATTTGTCAATTGTTTTTCATAAC
17375189 GTACTCAATTACTACA
66 GTACTCAATTACTACA
* *
17375205 TTATAATAAAAATTAATGGAGTATTTGATTGTAGTTATTTTAATTTGTCCATTGTTTTTCATAAC
1 TTATAATAAAAATTAATGGAGTATTTGATTGTAGTTGTTTTAATTTGTCAATTGTTTTTCATAAC
*
17375270 GTATTCAATTACT--A
66 GTACTCAATTACTACA
* *
17375284 TGT-T-AT---AA-TAA---A-TATTTGATTGTAGTTGTTTTAAATTGTCAATTTTTATTATAAC
1 T-TATAATAAAAATTAATGGAGTATTTGATTGTAGTTGTTTTAATTTGTCAATTGTT-TT-T---
** * ***
17375339 ACAATTATAACACACTCAATTATTGTG
60 -C----ATAACGTACTCAATTACTACA
* * *** * * * * * *
17375366 TTATAGTAAAAATTGACACAATATTTGATTGTAGCTGGTTTAATTTGTCAAATGTTGTCCATAAC
1 TTATAATAAAAATTAATGGAGTATTTGATTGTAGTTGTTTTAATTTGTCAATTGTTTTTCATAAC
* * * * *
17375431 GCATTCAATTATTGTGTGCG
66 GTACTCAATTA----CTACA
** * *
17375451 TTATGGTAAAAATTAATGCAGTATTTGA-TGTTAGTTGTTTTAAATTGTCAATTGTTTTTGC--A
1 TTATAATAAAAATTAATGGAGTATTTGATTG-TAGTTGTTTTAATTTGTCAATTGTTTTT-CATA
* * ***
17375513 GCGCACTCAATTACTGTG
64 ACGTACTCAATTACTACA
* * * * *
17375531 TTTTAATAAAAATTAATGTAGTATTTAATTGTAGTTGTTTTAAATTGTCAATTTTTTTT
1 TTATAATAAAAATTAATGGAGTATTTGATTGTAGTTGTTTTAATTTGTCAATTGTTTTT
17375590 ATACAGCACT
Statistics
Matches: 371, Mismatches: 63, Indels: 63
0.75 0.13 0.13
Matches are distributed among these distances:
70 31 0.08
71 3 0.01
72 1 0.00
74 3 0.01
75 2 0.01
76 1 0.00
78 2 0.01
79 3 0.01
80 137 0.37
81 85 0.23
82 2 0.01
83 1 0.00
84 14 0.04
85 49 0.13
86 3 0.01
87 2 0.01
90 2 0.01
91 30 0.08
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (81 bp):
TTATAATAAAAATTAATGGAGTATTTGATTGTAGTTGTTTTAATTTGTCAATTGTTTTTCATAAC
GTACTCAATTACTACA
Found at i:17382696 original size:20 final size:20
Alignment explanation
Indices: 17382673--17382712 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
17382663 TGAGGGCAGC
*
17382673 GAGGATGTGGCGAGGGTGGT
1 GAGGACGTGGCGAGGGTGGT
*
17382693 GAGGACGTGGTGAGGGTGGT
1 GAGGACGTGGCGAGGGTGGT
17382713 AGGGTTTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.05, G:0.60, T:0.20
Consensus pattern (20 bp):
GAGGACGTGGCGAGGGTGGT
Found at i:17383642 original size:64 final size:62
Alignment explanation
Indices: 17383466--17383704 Score: 171
Period size: 64 Copynumber: 3.8 Consensus size: 62
17383456 TTGTTTTAGT
* * * * * * *
17383466 ACGCAATAATTGATACTTGTATTTATTTCAGAA-AACCAATTACTACGTTG--CTATGTTGTATA
1 ACGCAATAATTGATAATTTTATTTTTTTCA-AACAATCAATTACTACATTGAATTA-GTT-CATA
* * * * * * *
17383528 ATGCAATATTTGATAATTGTAACTATTTTGAAACATTCAATTACTACATTGAATTAGTT-ATAA
1 ACGCAATAATTGATAATT-TTATTTTTTTCAAACAATCAATTACTACATTGAATTAGTTCAT-A
* * *
17383591 ACGCAATAATTGATAATTTTATTTTTTTTTCAAACAATCAAATACTACATTGATTTATTTCATA
1 ACGCAATAATTGATAATTTTA--TTTTTTTCAAACAATCAATTACTACATTGAATTAGTTCATA
* * * * * * *
17383655 ATGTAGTAATTGATACTTTTATTTGTTTCAAAAAATCAATTATTACATTG
1 ACGCAATAATTGATAATTTTATTTTTTTCAAACAATCAATTACTACATTG
17383705 CTATGTTGTA
Statistics
Matches: 138, Mismatches: 31, Indels: 16
0.75 0.17 0.09
Matches are distributed among these distances:
62 46 0.33
63 37 0.27
64 51 0.37
65 4 0.03
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (62 bp):
ACGCAATAATTGATAATTTTATTTTTTTCAAACAATCAATTACTACATTGAATTAGTTCATA
Found at i:17383781 original size:189 final size:187
Alignment explanation
Indices: 17383472--17383817 Score: 440
Period size: 189 Copynumber: 1.8 Consensus size: 187
17383462 TAGTACGCAA
* * *
17383472 TAATTGATACTTGTATTTATTTCAGAAAACCAATTACTACGTTGCTATGTTGTATAATGCAATAT
1 TAATTGATACTTGTATTTATTTCAAAAAACCAATTACTACATTGCTATGTTGTAAAATGCAATAT
* * * * *
17383537 TTGATAATTGTAACTATTTTGAAACATTCAATTACTACATTGAATTAGTTATAAACGCAATAATT
66 TTGATAATTATAACTACTTTGAAACATTCAATCACTACATTGAATTAGCTATAAACACAATAATT
* *
17383602 GATAATTTTATTTTTTTTTCAAACAATCAAATACTACATTGATTTATTTCATAATGTAG
131 GAGAATTTTA--TTCTTTTCAAACAATCAAATACTACATTGATTTATTTCATAATGTAG
* * * * * *
17383661 TAATTGATACTTTTATTTGTTTCAAAAAATCAATTATTACATTGCTATGTTGTAAAATGTAGTAT
1 TAATTGATACTTGTATTTATTTCAAAAAACCAATTACTACATTGCTATGTTGTAAAATGCAATAT
* * * *** * * * *
17383726 TTGATAATTATAATTGCTTTGAAATATTCAATCACTGTGTTGCATTGGCTATAAACATAGTAATT
66 TTGATAATTATAACTACTTTGAAACATTCAATCACTACATTGAATTAGCTATAAACACAATAATT
17383791 GAGAATTTTATTCTTTTCAAACAATCA
131 GAGAATTTTATTCTTTTCAAACAATCA
17383818 TATTGCGTTG
Statistics
Matches: 131, Mismatches: 26, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
187 16 0.12
189 115 0.88
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (187 bp):
TAATTGATACTTGTATTTATTTCAAAAAACCAATTACTACATTGCTATGTTGTAAAATGCAATAT
TTGATAATTATAACTACTTTGAAACATTCAATCACTACATTGAATTAGCTATAAACACAATAATT
GAGAATTTTATTCTTTTCAAACAATCAAATACTACATTGATTTATTTCATAATGTAG
Found at i:17384087 original size:66 final size:64
Alignment explanation
Indices: 17383980--17384107 Score: 143
Period size: 67 Copynumber: 2.0 Consensus size: 64
17383970 TATTTGATAA
* * * * *
17383980 TTGTAATTGTTTTGAAACATTCAATTATTGTCTTGCATTTG-TTTATAATACAATAATTGATTC
1 TTGTAATTGTTTTAAAACAATCAATTATTGACTTGCATTTGTTTTATAACACAATAAGTGATTC
* *
17384043 TTGTAATTGTTCTTTAAAACAATCAAATTATT-ACGTTGCTTTTGTTTTATGACACAATAAGTGA
1 TTGTAATTG-T-TTTAAAACAATC-AATTATTGAC-TTGCATTTGTTTTATAACACAATAAGTGA
17384107 T
62 T
17384108 CATTAACACT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
63 9 0.17
64 1 0.02
65 11 0.21
66 15 0.28
67 17 0.32
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (64 bp):
TTGTAATTGTTTTAAAACAATCAATTATTGACTTGCATTTGTTTTATAACACAATAAGTGATTC
Found at i:17384517 original size:3 final size:3
Alignment explanation
Indices: 17384509--17384546 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
17384499 ATTTCTTGTT
17384509 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17384547 AATCCAAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:17387045 original size:49 final size:49
Alignment explanation
Indices: 17386990--17387085 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
17386980 GATTTCATAT
* * *
17386990 ATAAACTTTTTTTTCAATATATGATTATGAGGTTATCTATGCTTTATAC
1 ATAAACTTTTTTTTCAATATATGATTATAAGATTATCAATGCTTTATAC
*
17387039 ATAAACTTTTTTTTCAATATATGATTATAAGATTATCAATGTTTTAT
1 ATAAACTTTTTTTTCAATATATGATTATAAGATTATCAATGCTTTAT
17387086 CTAATTAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (49 bp):
ATAAACTTTTTTTTCAATATATGATTATAAGATTATCAATGCTTTATAC
Found at i:17395242 original size:17 final size:16
Alignment explanation
Indices: 17395220--17395257 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
17395210 CAATAAATTG
17395220 ATAAACTATAAGCAAA
1 ATAAACTATAAGCAAA
*
17395236 TATAAACTATAATCAAA
1 -ATAAACTATAAGCAAA
17395253 ATAAA
1 ATAAA
17395258 AAGATAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.24
Consensus pattern (16 bp):
ATAAACTATAAGCAAA
Found at i:17400899 original size:15 final size:16
Alignment explanation
Indices: 17400864--17400905 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
17400854 AACACCTGAA
17400864 TATTATTACTCAAGAG
1 TATTATTACTCAAGAG
*
17400880 T-TTATTACTCATG-G
1 TATTATTACTCAAGAG
17400894 TATTA-TACTCAA
1 TATTATTACTCAA
17400906 TCCAAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (16 bp):
TATTATTACTCAAGAG
Found at i:17417100 original size:49 final size:48
Alignment explanation
Indices: 17417045--17417192 Score: 152
Period size: 55 Copynumber: 2.9 Consensus size: 48
17417035 TGCATAATTT
17417045 ATGCATCAATATTTATATTTGTACCAATGGCATTTTTGTTATTTGTCAC
1 ATGCATCAATATTTATATTT-TACCAATGGCATTTTTGTTATTTGTCAC
* * *
17417094 ATGCATCGATATTTACATTTATACTTTTACCAATGGTACTTTTGCTATTTGTCAC
1 ATGCATC-A-A--T--ATTTATA-TTTTACCAATGGCATTTTTGTTATTTGTCAC
* * **
17417149 ATACATCAATATTTACATTTTTATTAATGGCATTTTTGTTATTT
1 ATGCATCAATATTTATA-TTTTACCAATGGCATTTTTGTTATTT
17417193 ATTTCATCAT
Statistics
Matches: 81, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
49 34 0.42
50 1 0.01
51 2 0.02
53 2 0.02
54 1 0.01
55 38 0.47
56 3 0.04
ACGTcount: A:0.27, C:0.14, G:0.10, T:0.49
Consensus pattern (48 bp):
ATGCATCAATATTTATATTTTACCAATGGCATTTTTGTTATTTGTCAC
Found at i:17417125 original size:55 final size:55
Alignment explanation
Indices: 17417055--17417173 Score: 168
Period size: 55 Copynumber: 2.2 Consensus size: 55
17417045 ATGCATCAAT
* * * *
17417055 ATTTATATTTGTACCAATGGCATTTTTGTTATTTGTCACATGCATCGATATTTAC
1 ATTTATATTTGTACCAATGGCACTTTTGCTATTTGTCACATACATCAATATTTAC
*
17417110 ATTTATACTTT-TACCAATGGTACTTTTGCTATTTGTCACATACATCAATATTTAC
1 ATTTATA-TTTGTACCAATGGCACTTTTGCTATTTGTCACATACATCAATATTTAC
*
17417165 ATTTTTATT
1 ATTTATATT
17417174 AATGGCATTT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 2 0.04
55 52 0.91
56 3 0.05
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (55 bp):
ATTTATATTTGTACCAATGGCACTTTTGCTATTTGTCACATACATCAATATTTAC
Found at i:17417333 original size:19 final size:19
Alignment explanation
Indices: 17417296--17417361 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
17417286 CTCATAAAAT
** *
17417296 CCTAAACCACCCACGAAAC
1 CCTAAACCACCTTCCAAAC
* * *
17417315 CCTAAATCACTTTTCAAAC
1 CCTAAACCACCTTCCAAAC
*
17417334 CCTAAACCACCTTCCAAGC
1 CCTAAACCACCTTCCAAAC
17417353 CCTAAACCA
1 CCTAAACCA
17417362 AACCCTAACC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.38, C:0.42, G:0.03, T:0.17
Consensus pattern (19 bp):
CCTAAACCACCTTCCAAAC
Found at i:17417385 original size:19 final size:18
Alignment explanation
Indices: 17417352--17417395 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
17417342 ACCTTCCAAG
*
17417352 CCCTAAACCAAACCCTAA
1 CCCTAAACAAAACCCTAA
17417370 CCCTAAACTAAAACCCTAA
1 CCCTAAAC-AAAACCCTAA
*
17417389 ACCTAAA
1 CCCTAAA
17417396 TCATAACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.14
Consensus pattern (18 bp):
CCCTAAACAAAACCCTAA
Found at i:17417393 original size:6 final size:6
Alignment explanation
Indices: 17417353--17417475 Score: 56
Period size: 6 Copynumber: 19.0 Consensus size: 6
17417343 CCTTCCAAGC
* *
17417353 CCTAAA CC-AAA CCCTAAC CCTAAA -CTAAAA CCCTAAA CCTAAA TC-ATAA
1 CCTAAA CCTAAA -CCTAAA CCTAAA CCT-AAA -CCTAAA CCTAAA CCTA-AA
* * *
17417402 CATTAAA CCTTAAA CCCTAAA ACTAAA CCCT-AA TCTAAA CCCTAAAA
1 C-CTAAA CC-TAAA -CCTAAA CCTAAA -CCTAAA CCTAAA -CCT-AAA
17417449 CCTAAA CCCTAAGA CCATAAA CCTAAA
1 CCTAAA -CCTAA-A CC-TAAA CCTAAA
17417476 AAACAAAAAT
Statistics
Matches: 90, Mismatches: 10, Indels: 34
0.67 0.07 0.25
Matches are distributed among these distances:
5 8 0.09
6 37 0.41
7 33 0.37
8 12 0.13
ACGTcount: A:0.49, C:0.33, G:0.01, T:0.18
Consensus pattern (6 bp):
CCTAAA
Found at i:17417434 original size:7 final size:7
Alignment explanation
Indices: 17417352--17417475 Score: 72
Period size: 7 Copynumber: 19.0 Consensus size: 7
17417342 ACCTTCCAAG
17417352 CCCTAAA
1 CCCTAAA
17417359 -CC-AAA
1 CCCTAAA
17417364 CCCT-AA
1 CCCTAAA
17417370 CCCTAAA
1 CCCTAAA
17417377 --CTAAAA
1 CCCT-AAA
17417383 CCCTAAA
1 CCCTAAA
17417390 -CCTAAA
1 CCCTAAA
* *
17417396 TCAT-AA
1 CCCTAAA
**
17417402 CATTAAA
1 CCCTAAA
*
17417409 CCTTAAA
1 CCCTAAA
17417416 CCCTAAA
1 CCCTAAA
*
17417423 -ACTAAA
1 CCCTAAA
17417429 CCCT-AA
1 CCCTAAA
*
17417435 -TCTAAA
1 CCCTAAA
17417441 CCCTAAA
1 CCCTAAA
*
17417448 ACCTAAA
1 CCCTAAA
17417455 CCCTAAGA
1 CCCTAA-A
*
17417463 CCATAAA
1 CCCTAAA
17417470 -CCTAAA
1 CCCTAAA
17417476 AAACAAAAAT
Statistics
Matches: 91, Mismatches: 14, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
5 7 0.08
6 36 0.40
7 40 0.44
8 8 0.09
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (7 bp):
CCCTAAA
Found at i:17417442 original size:25 final size:26
Alignment explanation
Indices: 17417412--17417460 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
17417402 CATTAAACCT
17417412 TAAACCCTAAAA-CTAAACCCTAATC
1 TAAACCCTAAAACCTAAACCCTAATC
17417437 TAAACCCTAAAACCTAAACCCTAA
1 TAAACCCTAAAACCTAAACCCTAA
17417461 GACCATAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (26 bp):
TAAACCCTAAAACCTAAACCCTAATC
Found at i:17419244 original size:24 final size:24
Alignment explanation
Indices: 17419212--17419259 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
17419202 AAGAAGAAGA
*
17419212 AAAACTTTGAATTCTAGTGAATTC
1 AAAACTTTGAATTCTAGTCAATTC
17419236 AAAACTTTGAATTCTAGTCAATTC
1 AAAACTTTGAATTCTAGTCAATTC
17419260 TATGTGATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (24 bp):
AAAACTTTGAATTCTAGTCAATTC
Found at i:17419454 original size:35 final size:35
Alignment explanation
Indices: 17419408--17419477 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
17419398 ATAGAAATAA
* * *
17419408 TAAGATAGTACATGGCCATCATCTCATACACATCT
1 TAAGATAGTACATGCCCATAACCTCATACACATCT
*
17419443 TAAGATAGTACATGCCCATAACCTCATGCACATCT
1 TAAGATAGTACATGCCCATAACCTCATACACATCT
17419478 CAATAATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.27
Consensus pattern (35 bp):
TAAGATAGTACATGCCCATAACCTCATACACATCT
Found at i:17419537 original size:38 final size:36
Alignment explanation
Indices: 17419480--17419586 Score: 101
Period size: 37 Copynumber: 2.9 Consensus size: 36
17419470 GCACATCTCA
*
17419480 ATAATACATGCATCTCATCTTATGC-ACATC-TCAATAAG
1 ATAATACATGTATC-CATCTTAT-CTACATCTTC-AT-AG
*
17419518 ATAATACATGTACTCCATCTCATCTACATCTTCATAG
1 ATAATACATGTA-TCCATCTTATCTACATCTTCATAG
* * *
17419555 ATAGTACATGTGTTCCATCTTATATACATCTT
1 ATAATACATGT-ATCCATCTTATCTACATCTT
17419587 AATTGATAGA
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
37 30 0.51
38 25 0.42
39 4 0.07
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.36
Consensus pattern (36 bp):
ATAATACATGTATCCATCTTATCTACATCTTCATAG
Found at i:17419565 original size:37 final size:37
Alignment explanation
Indices: 17419505--17419607 Score: 107
Period size: 37 Copynumber: 2.8 Consensus size: 37
17419495 CATCTTATGC
* * *
17419505 ACATCTCAATAAGATAATACATGTACTCCATCTCATCT
1 ACATCTTAAT-AGATAGTACATGTACTCCATCTCATAT
* ** *
17419543 ACATCTTCATAGATAGTACATGTGTTCCATCTTATAT
1 ACATCTTAATAGATAGTACATGTACTCCATCTCATAT
* * *
17419580 ACATCTTAATTGATAGAACATGCACTCC
1 ACATCTTAATAGATAGTACATGTACTCC
17419608 TCCTCATGCA
Statistics
Matches: 52, Mismatches: 13, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
37 44 0.85
38 8 0.15
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (37 bp):
ACATCTTAATAGATAGTACATGTACTCCATCTCATAT
Found at i:17423495 original size:10 final size:10
Alignment explanation
Indices: 17423482--17423578 Score: 51
Period size: 10 Copynumber: 9.8 Consensus size: 10
17423472 AAAAAATTGT
*
17423482 AAAAGAATGA
1 AAAAGAAAGA
17423492 AAAAGGAAAAGA
1 AAAA-G-AAAGA
*
17423504 AAATGAAAGA
1 AAAAGAAAGA
*
17423514 AAATA-AATGA
1 AAA-AGAAAGA
*
17423524 AAAA-AAAAA
1 AAAAGAAAGA
* *
17423533 GAAAATAATGA
1 -AAAAGAAAGA
*
17423544 AAAA-AAAGT
1 AAAAGAAAGA
17423553 AAAA-AAA-A
1 AAAAGAAAGA
*
17423561 AAAAGAAAAA
1 AAAAGAAAGA
17423571 AAAAGAAA
1 AAAAGAAA
17423579 AGGAATAAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
8 4 0.06
9 17 0.25
10 36 0.52
11 5 0.07
12 7 0.10
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.07
Consensus pattern (10 bp):
AAAAGAAAGA
Found at i:17423557 original size:30 final size:31
Alignment explanation
Indices: 17423482--17423579 Score: 99
Period size: 32 Copynumber: 3.1 Consensus size: 31
17423472 AAAAAATTGT
* *
17423482 AAAAGAATGAAAAAGGAAAAGAAAATGAAAGA
1 AAAAAAATGAAAAA-AAAAAGAAAATGAAAGA
* *
17423514 AAATAAATGAAAAAAAAAAGAAAAT-AATGA
1 AAAAAAATGAAAAAAAAAAGAAAATGAAAGA
* **
17423544 AAAAAAAGTAAAAAAAAAAAAGAAAAAAAAAGA
1 AAAAAAA-T-GAAAAAAAAAAGAAAATGAAAGA
17423577 AAA
1 AAA
17423580 GGAATAAATA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
30 10 0.18
31 11 0.20
32 27 0.49
33 7 0.13
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (31 bp):
AAAAAAATGAAAAAAAAAAGAAAATGAAAGA
Found at i:17423558 original size:21 final size:21
Alignment explanation
Indices: 17423509--17423579 Score: 83
Period size: 20 Copynumber: 3.4 Consensus size: 21
17423499 AAAGAAAATG
17423509 AAAGAAAATAAATGAAAAAAA
1 AAAGAAAATAAATGAAAAAAA
17423530 AAAGAAAAT-AATGAAAAAAA
1 AAAGAAAATAAATGAAAAAAA
* * *
17423550 AGTAAAAAAAAAAAAG-AAAAAA
1 A--AAGAAAATAAATGAAAAAAA
17423572 AAAGAAAA
1 AAAGAAAA
17423580 GGAATAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
20 18 0.42
21 9 0.21
22 13 0.30
23 3 0.07
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (21 bp):
AAAGAAAATAAATGAAAAAAA
Found at i:17423559 original size:13 final size:13
Alignment explanation
Indices: 17423498--17423574 Score: 57
Period size: 14 Copynumber: 5.5 Consensus size: 13
17423488 ATGAAAAAGG
* *
17423498 AAAAGAAAATGAA
1 AAAAAAAAAAGAA
* *
17423511 AGAAAATAAATGAA
1 A-AAAAAAAAAGAA
17423525 AAAAAAAAGAA-AA
1 AAAAAAAA-AAGAA
17423538 TAATGAAAAAAAAGTAA
1 -AA--AAAAAAAAG-AA
17423555 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
17423568 AAAAAAA
1 AAAAAAA
17423575 GAAAAGGAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
13 18 0.34
14 23 0.43
15 2 0.04
16 8 0.15
17 2 0.04
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:17423579 original size:10 final size:10
Alignment explanation
Indices: 17423498--17423579 Score: 60
Period size: 10 Copynumber: 7.9 Consensus size: 10
17423488 ATGAAAAAGG
*
17423498 AAAAGAAAAT
1 AAAAGAAAAA
* *
17423508 GAAAGAAAAT
1 AAAAGAAAAA
*
17423518 AAATGAAAAAA
1 AAAAG-AAAAA
17423529 AAAAGAAAATA
1 AAAAGAAAA-A
17423540 ATGAAA-AAAAA
1 A--AAAGAAAAA
*
17423551 GTAAA-AAAAA
1 -AAAAGAAAAA
17423561 AAAAGAAAAA
1 AAAAGAAAAA
17423571 AAAAGAAAA
1 AAAAGAAAA
17423580 GGAATAAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
9 3 0.05
10 38 0.64
11 11 0.19
12 4 0.07
13 3 0.05
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:17423934 original size:15 final size:15
Alignment explanation
Indices: 17423914--17423943 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17423904 TATATGATGT
17423914 AATAAAAAAAAAGAA
1 AATAAAAAAAAAGAA
*
17423929 AATAAAAAGAAAGAA
1 AATAAAAAAAAAGAA
17423944 GAAAAAGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (15 bp):
AATAAAAAAAAAGAA
Found at i:17425549 original size:41 final size:41
Alignment explanation
Indices: 17425524--17425732 Score: 142
Period size: 41 Copynumber: 5.1 Consensus size: 41
17425514 AACTTTTAGA
17425524 TTTTGTAAAGATTTTCAAAGACCTCCAAGCAAAACCTTAAAT
1 TTTTG-AAAGATTTTCAAAGACCTCCAAGCAAAACCTTAAAT
* * * * *
17425566 TTTTGAATGATTTTCAAAGAACTCCAAGCCAAACCTCATAT
1 TTTTGAAAGATTTTCAAAGACCTCCAAGCAAAACCTTAAAT
* * *
17425607 TTTT-AAATGATTTCCAAAGACGT-CAAGGCAAAATCTTAAAT
1 TTTTGAAA-GATTTTCAAAGACCTCCAA-GCAAAACCTTAAAT
* * * * * * * * **
17425648 CTTTGAACGA-TCTCTAAGACCACTAGGAAAAATGTTAAAT
1 TTTTGAAAGATTTTCAAAGACCTCCAAGCAAAACCTTAAAT
* *
17425688 TTTTTAACA-ATTTTC-AAGACCT-TAAGGCAAAACCTTAAAAT
1 TTTTGAA-AGATTTTCAAAGACCTCCAA-GCAAAACCTT-AAAT
17425729 TTTT
1 TTTT
17425733 AAATAATTTT
Statistics
Matches: 126, Mismatches: 33, Indels: 17
0.72 0.19 0.10
Matches are distributed among these distances:
39 2 0.02
40 43 0.34
41 74 0.59
42 7 0.06
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (41 bp):
TTTTGAAAGATTTTCAAAGACCTCCAAGCAAAACCTTAAAT
Found at i:17425808 original size:42 final size:41
Alignment explanation
Indices: 17425684--17425827 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 41
17425674 GAAAAATGTT
* * ** *
17425684 AAATTTTTTAACAATTTTCAAGACCTTAAGGCAAAACCTTA
1 AAATTTTTTAAAAATTTTAAAGACCTTCGGGCAAAACTTTA
* * * * * *
17425725 AAA-TTTTTAAATAATTTTTAATATCTCCGAGCAAAATTTTA
1 AAATTTTTTAAA-AATTTTAAAGACCTTCGGGCAAAACTTTA
*
17425766 AAATTTTTTAAAAATTTCTAAAGACCTTCGGGTAAAACTTTA
1 AAATTTTTTAAAAATTT-TAAAGACCTTCGGGCAAAACTTTA
* *
17425808 AATTTTTTTAAAAAATTTAA
1 AAATTTTTTAAAAATTTTAA
17425828 CTTATCCAAA
Statistics
Matches: 81, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
40 7 0.09
41 34 0.42
42 40 0.49
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.40
Consensus pattern (41 bp):
AAATTTTTTAAAAATTTTAAAGACCTTCGGGCAAAACTTTA
Found at i:17426175 original size:2 final size:2
Alignment explanation
Indices: 17426134--17426159 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
17426124 ACCCTAAACC
17426134 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
17426160 TAATCTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17432398 original size:26 final size:24
Alignment explanation
Indices: 17432332--17432420 Score: 71
Period size: 24 Copynumber: 3.8 Consensus size: 24
17432322 ATTGAGTATG
17432332 TAAAATTTTT--TAAAAAT-TTAA
1 TAAAATTTTTAATAAAAATATTAA
* * **
17432353 T-AAA-TTTTGATATATTTATTAAA
1 TAAAATTTTTAATAAAAATATT-AA
17432376 TAAATATTTTTAATAAAAATATTAA
1 TAAA-ATTTTTAATAAAAATATTAA
* *
17432401 TAAAATTTTTATTACAAATA
1 TAAAATTTTTAATAAAAATA
17432421 AATGTCTATC
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
19 4 0.08
20 3 0.06
21 5 0.10
22 2 0.04
23 3 0.06
24 16 0.31
25 7 0.13
26 12 0.23
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (24 bp):
TAAAATTTTTAATAAAAATATTAA
Found at i:17432419 original size:24 final size:26
Alignment explanation
Indices: 17432369--17432420 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 26
17432359 TTGATATATT
17432369 TATTAAATAAATATTTTTAATAAAAA
1 TATTAAATAAATATTTTTAATAAAAA
* *
17432395 TATT-AATAAA-ATTTTTATTACAAA
1 TATTAAATAAATATTTTTAATAAAAA
17432419 TA
1 TA
17432421 AATGTCTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.58
25 6 0.25
26 4 0.17
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (26 bp):
TATTAAATAAATATTTTTAATAAAAA
Found at i:17435417 original size:2 final size:2
Alignment explanation
Indices: 17435410--17435439 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
17435400 GTCAAATACA
17435410 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
17435440 ACACACACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:17440662 original size:19 final size:18
Alignment explanation
Indices: 17440626--17440669 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
17440616 TATATAAATT
*
17440626 ATATAAATTATTTATTAA
1 ATATAAATTATATATTAA
*
17440644 ATTTAAATTAATATATTAA
1 ATATAAATT-ATATATTAA
17440663 ATATAAA
1 ATATAAA
17440670 ATATTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATAAATTATATATTAA
Found at i:17443015 original size:38 final size:39
Alignment explanation
Indices: 17442973--17443055 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 39
17442963 TTGAACGACC
* * * *
17442973 TTTAAATAATAATGAAATATT-TAATAT-GATTTTTGAAT
1 TTTAAATAAAAATAAAAAATTCTAATATAG-TATTTGAAT
17443011 TTTAAA-AAAAATAAAAAATTCTAATATAGTATTTGAAT
1 TTTAAATAAAAATAAAAAATTCTAATATAGTATTTGAAT
*
17443049 TATAAAT
1 TTTAAAT
17443056 TTATTAATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
37 11 0.30
38 25 0.68
39 1 0.03
ACGTcount: A:0.51, C:0.01, G:0.06, T:0.42
Consensus pattern (39 bp):
TTTAAATAAAAATAAAAAATTCTAATATAGTATTTGAAT
Found at i:17446615 original size:18 final size:16
Alignment explanation
Indices: 17446569--17446622 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
17446559 TTTTTAGGAC
* *
17446569 TTTGGATTTTAAGAGGT
1 TTTGAATTTT-AGGGGT
17446586 TTTGAATTTTAGGGGAT
1 TTTGAATTTTAGGGG-T
17446603 TTTGAATTTTTAGGGGT
1 TTTGAA-TTTTAGGGGT
17446620 TTT
1 TTT
17446623 AGAAACTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 4 0.12
17 20 0.61
18 9 0.27
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (16 bp):
TTTGAATTTTAGGGGT
Found at i:17452761 original size:28 final size:28
Alignment explanation
Indices: 17452724--17452780 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
17452714 GTGCGACTAT
* *
17452724 TTATATTTAAGATCTCAATTTATTGTTA
1 TTATATTTAAGATCCCAATTTACTGTTA
17452752 TTATATTTAAGATCCCAATTTACTGTTA
1 TTATATTTAAGATCCCAATTTACTGTTA
17452780 T
1 T
17452781 ACCTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.51
Consensus pattern (28 bp):
TTATATTTAAGATCCCAATTTACTGTTA
Found at i:17452984 original size:18 final size:16
Alignment explanation
Indices: 17452938--17452991 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
17452928 TTTTTTGGAC
* *
17452938 TTTGGATTTTAAGAGGT
1 TTTGAATTTT-AGGGGT
17452955 TTTGAATTTTAGGGGAT
1 TTTGAATTTTAGGGG-T
17452972 TTTGAATTTTTAGGGGT
1 TTTGAA-TTTTAGGGGT
17452989 TTT
1 TTT
17452992 AGAAACTTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 4 0.12
17 20 0.61
18 9 0.27
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (16 bp):
TTTGAATTTTAGGGGT
Found at i:17454427 original size:23 final size:23
Alignment explanation
Indices: 17454401--17454450 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
17454391 AGCTGGTCAA
17454401 GGGGCTGGTCAGGAGGCTGACAG
1 GGGGCTGGTCAGGAGGCTGACAG
* *
17454424 GGGGTTGGTCGGGAGGCTGACAG
1 GGGGCTGGTCAGGAGGCTGACAG
17454447 GGGG
1 GGGG
17454451 GCGACAGTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.14, C:0.14, G:0.58, T:0.14
Consensus pattern (23 bp):
GGGGCTGGTCAGGAGGCTGACAG
Found at i:17454522 original size:3 final size:3
Alignment explanation
Indices: 17454516--17454563 Score: 53
Period size: 3 Copynumber: 15.3 Consensus size: 3
17454506 AAATTTTTTA
*
17454516 ATT ATT ATAT ATT -TT AAAT ATTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT AT-T ATT ATT -ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
17454563 A
1 A
17454564 ATATACTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 2 0.05
3 30 0.77
4 7 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:17454545 original size:26 final size:25
Alignment explanation
Indices: 17454501--17454553 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
17454491 TTCCTTTTTT
*
17454501 TTTTAAAATTTTTTAATTATTATATA
1 TTTTAAAATTTATTAATTATTAT-TA
17454527 TTTTAAATATTTATT-ATTATTATTA
1 TTTTAAA-ATTTATTAATTATTATTA
17454552 TT
1 TT
17454554 ATTATTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 4 0.16
26 15 0.60
27 6 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTAAAATTTATTAATTATTATTA
Found at i:17461805 original size:26 final size:26
Alignment explanation
Indices: 17461765--17461815 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17461755 TCTAGCCATT
* *
17461765 TTTTTTTCTCTTCTAGATTTTCTTTC
1 TTTTTTTCTCTTCTAAATTCTCTTTC
17461791 TTTTTTTCT-TCTCTAAATTCTCTTT
1 TTTTTTTCTCT-TCTAAATTCTCTTT
17461816 TGTCTCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.10, C:0.20, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTTTTTCTCTTCTAAATTCTCTTTC
Found at i:17463565 original size:6 final size:6
Alignment explanation
Indices: 17463550--17463587 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
17463540 CTTTTAATTT
* *
17463550 AAAAAA AAAAAC AAAAAC AAAAAC AAAAAT AAAAAC AA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AA
17463588 GATACTGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.03
Consensus pattern (6 bp):
AAAAAC
Found at i:17466666 original size:2 final size:2
Alignment explanation
Indices: 17466661--17466688 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
17466651 TTTGAAGCCA
17466661 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
17466689 AAACCCTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:17478928 original size:22 final size:21
Alignment explanation
Indices: 17478858--17478928 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
17478848 AAATTCAAAA
* **
17478858 GTTTTAAGATGAATACCTTTAG
1 GTTTTAAAAT-AATACCTAAAG
*
17478880 GTTTTAAAATAATATCTGAAAG
1 GTTTTAAAATAATACCT-AAAG
* *
17478902 ATTTTAAAAATAATACCTAGAG
1 GTTTT-AAAATAATACCTAAAG
17478924 GTTTT
1 GTTTT
17478929 GTAAAGGTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
21 6 0.15
22 22 0.56
23 11 0.28
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (21 bp):
GTTTTAAAATAATACCTAAAG
Found at i:17479129 original size:22 final size:22
Alignment explanation
Indices: 17479085--17479133 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
17479075 GAGGTTTTAA
* * *
17479085 ATCATGCCTTAAGGTCTTTTAG
1 ATCATGCCTTAAGATATTATAG
*
17479107 ATCATGCTTTAAGATATTATAG
1 ATCATGCCTTAAGATATTATAG
17479129 ATCAT
1 ATCAT
17479134 TTTCATCTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (22 bp):
ATCATGCCTTAAGATATTATAG
Found at i:17485877 original size:18 final size:17
Alignment explanation
Indices: 17485854--17485893 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
17485844 GTTTGTAAGT
*
17485854 TTTTTTTTTCTTTTTTCA
1 TTTTTTTTTCATTTTT-A
17485872 TTTTTTTTTCATTTTTA
1 TTTTTTTTTCATTTTTA
17485889 TTTTT
1 TTTTT
17485894 GATTTGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTTTTCATTTTTA
Found at i:17485964 original size:11 final size:12
Alignment explanation
Indices: 17485950--17485978 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
17485940 ATTTATAAGA
17485950 TTTATATAT-TT
1 TTTATATATATT
17485961 TTTATATATATT
1 TTTATATATATT
17485973 TTTATA
1 TTTATA
17485979 CTAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATATATATT
Found at i:17487620 original size:23 final size:23
Alignment explanation
Indices: 17487556--17487612 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
17487546 AAGATAATAT
17487556 TCAAAGGTTTTACAAAAAAGTAC
1 TCAAAGGTTTTACAAAAAAGTAC
*
17487579 TCGAAGGTTTTACAAAAAAGTAC
1 TCAAAGGTTTTACAAAAAAGTAC
17487602 TCAAAGGTTTT
1 TCAAAGGTTTT
17487613 TTTCAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (23 bp):
TCAAAGGTTTTACAAAAAAGTAC
Found at i:17489599 original size:19 final size:19
Alignment explanation
Indices: 17489571--17489613 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
17489561 TATCTTTCTT
*
17489571 TTTTTCATTTTCATTTTCA
1 TTTTTAATTTTCATTTTCA
**
17489590 TTTTTAATTTTTTTTTTCA
1 TTTTTAATTTTCATTTTCA
17489609 TTTTT
1 TTTTT
17489614 TTTTCTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTAATTTTCATTTTCA
Found at i:17489613 original size:12 final size:12
Alignment explanation
Indices: 17489554--17489617 Score: 56
Period size: 12 Copynumber: 4.9 Consensus size: 12
17489544 TCAAAACATG
17489554 CATTTTTTATCTTT
1 CATTTTTT-T-TTT
*
17489568 CTTTTTTTCATTTT
1 CATTTTTT--TTTT
*
17489582 CATTTTCATTTTT
1 CATTTT-TTTTTT
*
17489595 AATTTTTTTTTT
1 CATTTTTTTTTT
17489607 CATTTTTTTTT
1 CATTTTTTTTT
17489618 CTTTCATGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
12 15 0.36
13 9 0.21
14 15 0.36
15 3 0.07
ACGTcount: A:0.12, C:0.11, G:0.00, T:0.77
Consensus pattern (12 bp):
CATTTTTTTTTT
Found at i:17494252 original size:16 final size:17
Alignment explanation
Indices: 17494223--17494260 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
17494213 TAAATTTCAT
*
17494223 ATTTAAATAAAATCACA
1 ATTTAAATAAAATCAAA
17494240 ATTTAAA-AAAATCAAA
1 ATTTAAATAAAATCAAA
17494256 ATTTA
1 ATTTA
17494261 TGTTATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.32
Consensus pattern (17 bp):
ATTTAAATAAAATCAAA
Found at i:17495129 original size:15 final size:16
Alignment explanation
Indices: 17495098--17495130 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17495088 TGCAGAAACA
*
17495098 AAAAAAATTTCTTTTT
1 AAAAAAATTTCTGTTT
17495114 AAAAAAATTT-TGTTT
1 AAAAAAATTTCTGTTT
17495129 AA
1 AA
17495131 GGAAAAGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (16 bp):
AAAAAAATTTCTGTTT
Found at i:17495581 original size:6 final size:6
Alignment explanation
Indices: 17495541--17495587 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
17495531 CATTTGTAAG
* * *
17495541 TTTTTA TTTTTCC TTTTTA GTTTTA TTTTTA -TTTTA TTTTTC TTTTT
1 TTTTTA TTTTT-A TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
17495588 TTTAAGATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
5 5 0.15
6 24 0.71
7 5 0.15
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:17495616 original size:16 final size:18
Alignment explanation
Indices: 17495597--17495633 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
17495587 TTTTAAGATT
17495597 TTTATA-ATTTATA-ATA
1 TTTATATATTTATATATA
*
17495613 TTTATATTTTTATATATA
1 TTTATATATTTATATATA
17495631 TTT
1 TTT
17495634 TTATTCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 6 0.33
18 6 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTATATATTTATATATA
Found at i:17495638 original size:18 final size:18
Alignment explanation
Indices: 17495561--17495638 Score: 63
Period size: 18 Copynumber: 4.4 Consensus size: 18
17495551 TCCTTTTTAG
*
17495561 TTTTATTTTTAT-TTTAT
1 TTTTATTTTTATATATAT
* * *
17495578 TTTTCTTTTT-TTTAAGAT
1 TTTTATTTTTATAT-ATAT
*
17495596 TTTTATAATTTATA-ATAT
1 TTTTAT-TTTTATATATAT
*
17495614 TTATATTTTTATATATAT
1 TTTTATTTTTATATATAT
17495632 TTTTATT
1 TTTTATT
17495639 CTAAAAATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
16 1 0.02
17 16 0.35
18 25 0.54
19 3 0.07
20 1 0.02
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (18 bp):
TTTTATTTTTATATATAT
Found at i:17507316 original size:34 final size:34
Alignment explanation
Indices: 17507253--17507317 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
17507243 AACCTTTCAA
*
17507253 ATTTAAAGTTTCATAGCTTCTAGTCAGAAGAAAT
1 ATTTAAAGTTTCATAGCCTCTAGTCAGAAGAAAT
* * *
17507287 ATTTAAAGTTTCATTGCCTCTGGTTAGAAGA
1 ATTTAAAGTTTCATAGCCTCTAGTCAGAAGA
17507318 GTCTTTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (34 bp):
ATTTAAAGTTTCATAGCCTCTAGTCAGAAGAAAT
Found at i:17507347 original size:40 final size:40
Alignment explanation
Indices: 17507287--17507364 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
17507277 CAGAAGAAAT
** * *
17507287 ATTTAAAGTTTCATTGCCTCTGGTTAGAAGAGTCTTTTAA
1 ATTTAAAGTTTCATAACCTCTGGTCAAAAGAGTCTTTTAA
*
17507327 ATTTAAAGTTTTATAACCTCTGGTCAAAAGAGTCTTTT
1 ATTTAAAGTTTCATAACCTCTGGTCAAAAGAGTCTTTT
17507365 TAAACTTTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (40 bp):
ATTTAAAGTTTCATAACCTCTGGTCAAAAGAGTCTTTTAA
Found at i:17512262 original size:2 final size:2
Alignment explanation
Indices: 17512255--17512283 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17512245 AAACCTCATT
17512255 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
17512284 TAAAATCCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17518935 original size:16 final size:15
Alignment explanation
Indices: 17518911--17518956 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 15
17518901 TTTTTTTTTT
*
17518911 AGGACTTTGGATTTCA
1 AGGATTTTGGATTT-A
17518927 AGGATTTTGGATTTA
1 AGGATTTTGGATTTA
17518942 ATGGATTTTGGATTT
1 A-GGATTTTGGATTT
17518957 TTAGGGGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 2 0.07
16 26 0.93
ACGTcount: A:0.24, C:0.04, G:0.26, T:0.46
Consensus pattern (15 bp):
AGGATTTTGGATTTA
Found at i:17519468 original size:19 final size:18
Alignment explanation
Indices: 17519434--17519478 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
17519424 GATTCGACGA
17519434 TTCGGTCTGACGGTTCGG
1 TTCGGTCTGACGGTTCGG
*
17519452 TTCGGTCTGGGCGGTTCGG
1 TTCGGTCT-GACGGTTCGG
17519471 TATCGGTC
1 T-TCGGTC
17519479 CAGTCAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 8 0.33
19 10 0.42
20 6 0.25
ACGTcount: A:0.04, C:0.22, G:0.40, T:0.33
Consensus pattern (18 bp):
TTCGGTCTGACGGTTCGG
Found at i:17520471 original size:22 final size:22
Alignment explanation
Indices: 17520446--17520491 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
17520436 TGTTTACTTG
*
17520446 TTTTATTT-TTTTCTGTTTTGT
1 TTTTTTTTCTTTTCTGTTTTGT
*
17520467 TTTTTTTTCTTTTTTGTTTTGT
1 TTTTTTTTCTTTTCTGTTTTGT
17520489 TTT
1 TTT
17520492 GTTAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.85
Consensus pattern (22 bp):
TTTTTTTTCTTTTCTGTTTTGT
Found at i:17520473 original size:17 final size:17
Alignment explanation
Indices: 17520451--17520491 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
17520441 ACTTGTTTTA
17520451 TTTTTTTCTGTTTTGTT
1 TTTTTTTCTGTTTTGTT
*
17520468 TTTTTTTCTTTTTTGTT
1 TTTTTTTCTGTTTTGTT
*
17520485 TTGTTTT
1 TTTTTTT
17520492 GTTAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.85
Consensus pattern (17 bp):
TTTTTTTCTGTTTTGTT
Found at i:17520736 original size:48 final size:48
Alignment explanation
Indices: 17520658--17521598 Score: 1235
Period size: 48 Copynumber: 19.7 Consensus size: 48
17520648 ACAGAAAAGG
* * *
17520658 GCTCCTCTTAGCAGAGGCTCAACAACTTTAAAATTTC-TTCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATT-TTGAAAAA
* * * * * * * *
17520706 GCTCTTCTTAACAGAGGTTCCATAATTTTAAAATTTTATTTCGGAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * * * *
17520754 GCTCCTCTCAGCAAAGGCTCAACAACTTTAAAATCTCA-TCTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * * * *
17520801 GCTTCTCTCAACAAAGGTTCCATAACTTTAAAATTTCATTTTGGAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * * * *
17520849 GCTACTCTCAGCAGAGGTTCCACAACTTTAAAATTTCATTTTGGAAAG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * *
17520897 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TTCTTTCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATT-TTGAAAAA
* *
17520945 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATCTCA-TCTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* *
17520992 GCTCCTCTCAATAGAGGCTCCATAACTTTAAAATTTCATTTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* *
17521040 GCTCCTCTCAACAGAGGCTCTACAACTTTAAAA-TTCTTTCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATT-TTGAAAAA
*
17521088 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATTT-TTTCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATTTCATT-TTGAAAAA
* *
17521137 GCTCCTCTCAACAAAGGCTCAACAACTTTAAAATTTCATTTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* *
17521185 GCTCCTCTTAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
*
17521233 G---CTC-CAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * *
17521277 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TTCTTTCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATT-TTGAAAAA
* *
17521325 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATCTCATCTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
17521373 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-TTCATTTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
17521420 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * * *
17521468 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TTCTTTCTTGGAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATT-TTGAAAAA
*
17521516 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCA-TTTGAAAAA
1 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATTTCATTTTGAAAAA
* *
17521564 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATT
17521599 CTTATTTGTT
Statistics
Matches: 792, Mismatches: 82, Indels: 39
0.87 0.09 0.04
Matches are distributed among these distances:
44 40 0.05
45 3 0.00
47 153 0.19
48 535 0.68
49 57 0.07
50 4 0.01
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.29
Consensus pattern (48 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
Found at i:17520992 original size:143 final size:143
Alignment explanation
Indices: 17520658--17521598 Score: 1281
Period size: 143 Copynumber: 6.6 Consensus size: 143
17520648 ACAGAAAAGG
* * * * * *
17520658 GCTCCTCTTAGCAGAGGCTCAACAACTTTAAAATTTCTTCTTGAAAAAGCTCTTCTTAACAGAGG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCAT-TTGAAAAAGCTCCTCTCAACAGAGG
* * * * * * * *
17520723 TTCCATAATTTTAAAATTTTATTTCGGAAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAAAA-
65 CTCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAT
*
17520787 TCTCATC-TGAAAAA
130 TCT-TTCTTGAAAAA
* * * * * * *
17520801 GCTTCTCTCAACAAAGGTTCCATAACTTTAAAATTTCATTTTGGAAAAGCTACTCTCAGCAGAGG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCA-TTTGAAAAAGCTCCTCTCAACAGAGG
* * * *
17520866 TTCCACAACTTTAAAATTTCATTTTGGAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAT
65 CTCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAT
17520931 TCTTTCTTGAAAAA
130 TCTTTCTTGAAAAA
* * *
17520945 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATCTCATCTGAAAAAGCTCCTCTCAATAGAGGC
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTGAAAAAGCTCCTCTCAACAGAGGC
* *
17521010 TCCATAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAACAGAGGCTCTACAACTTTAAAATT
66 TCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATT
17521075 CTTTCTTGAAAAA
131 CTTTCTTGAAAAA
** *
17521088 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATTTTTTCTTGAAAAAGCTCCTCTCAACAAAG
1 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATTTCAT-TTGAAAAAGCTCCTCTCAACAGAG
* *
17521153 GCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTTAACAGAGGCTCAACAACTTTAAAA
64 GCTCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAA
*
17521218 TTTCATT-TTGAAAAA
129 -TTCTTTCTTGAAAAA
* *
17521233 G---CTC-CAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCA-TTTGAAAAAGCTCCTCTCAACAGAGG
* * *
17521294 CTCAACAACTTTAAAA-TTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAA
65 CTCCACAACTTTAAAATTTCATT-TTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAA
*
17521358 -TCTCATCTTGAAAAA
129 TTCT-TTCTTGAAAAA
17521373 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-TTCATTTTGAAAAAGCTCCTCTCAACAGAGG
1 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCA-TTTGAAAAAGCTCCTCTCAACAGAGG
*
17521437 CTCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAT
65 CTCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAT
*
17521502 TCTTTCTTGGAAAA
130 TCTTTCTTGAAAAA
* *
17521516 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATTTGAAAAAGCTCCTCTCAGCAGAGG
1 GCTCCTCTCAACAGAGGCTCCACAACTTT-AAAATTTCATTTGAAAAAGCTCCTCTCAACAGAGG
*
17521581 CTCAACAACTTTAAAATT
65 CTCCACAACTTTAAAATT
17521599 CTTATTTGTT
Statistics
Matches: 712, Mismatches: 68, Indels: 35
0.87 0.08 0.04
Matches are distributed among these distances:
138 2 0.00
139 6 0.01
140 94 0.13
141 21 0.03
142 3 0.00
143 358 0.50
144 129 0.18
145 94 0.13
146 5 0.01
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.29
Consensus pattern (143 bp):
GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTGAAAAAGCTCCTCTCAACAGAGGC
TCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATT
CTTTCTTGAAAAA
Found at i:17521599 original size:191 final size:191
Alignment explanation
Indices: 17520658--17521598 Score: 1369
Period size: 191 Copynumber: 4.9 Consensus size: 191
17520648 ACAGAAAAGG
* * * * *
17520658 GCTCCTCTTAGCAGAGGCTCAACAACTTTAAAATTTC-TTCTTGAAAAAGCTCTTCTTAACAGAG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATT-TTGAAAAAGCTCCTCTCAGCAGAG
* * * * * * * *
17520722 GTTCCATAATTTTAAAATT-TTAT-TTCGGAAAAGCTCCTCTCAGCAAAGGCTCAACAACTTTAA
65 GCTCAACAACTTTAAAATTCTT-TCTT-GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAA
* * * * * *
17520785 AATCTCATCTGAAAAAGCTTCTCTCAACAAAGGTTCCATAACTTTAAAATTTCATTTTGGAAAA
128 AATCTCATTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * * * * *
17520849 GCTACTCTCAGCAGAGGTTCCACAACTTTAAAATTTCATTTTGGAAAGGCTCCTCTCAGCAGAGG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGG
17520914 CTCAACAACTTTAAAATTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAT
66 CTCAACAACTTTAAAATTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAT
* * *
17520979 CTCATCTGAAAAAGCTCCTCTCAATAGAGGCTCCATAACTTTAAAATTTCATTTTGAAAAA
131 CTCATTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
* * *
17521040 GCTCCTCTCAACAGAGGCTCTACAACTTTAAAA-TTCTTTCTTGAAAAAGCTCCTCTCAACAGAG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATT-TTGAAAAAGCTCCTCTCAGCAGAG
* * * *
17521104 GCTCCACAACTTTAAAAATTTTTTCTTGAAAAAGCTCCTCTCAACAAAGGCTCAACAACTTTAAA
65 GCTCAACAACTTT-AAAATTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAA
* * *
17521169 ATTTCATTTTGAAAAAGCTCCTCTTAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAA
129 ATCTCA-TTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
17521233 G---CTC-CAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGG
17521294 CTCAACAACTTTAAAATTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAT
66 CTCAACAACTTTAAAATTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAT
17521359 CTCATCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-TTCATTTTGAAAAA
131 CTCAT-TTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
*
17521420 GCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGG
1 GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGG
*
17521485 CTCAACAACTTTAAAATTCTTTCTTGGAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA
66 CTCAACAACTTTAAAATTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTT-AAAA
* *
17521550 TCTCATTTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT
130 TCTCATTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATT
17521599 CTTATTTGTT
Statistics
Matches: 682, Mismatches: 54, Indels: 27
0.89 0.07 0.04
Matches are distributed among these distances:
187 16 0.02
188 92 0.13
189 59 0.09
190 16 0.02
191 376 0.55
192 70 0.10
193 53 0.08
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.29
Consensus pattern (191 bp):
GCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATTTTGAAAAAGCTCCTCTCAGCAGAGG
CTCAACAACTTTAAAATTCTTTCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAT
CTCATTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTTCATTTTGAAAAA
Found at i:17533623 original size:16 final size:17
Alignment explanation
Indices: 17533583--17533645 Score: 76
Period size: 16 Copynumber: 3.8 Consensus size: 17
17533573 TTTTTTTTTT
*
17533583 AGGACTTTGGATTTCAA
1 AGGATTTTGGATTTCAA
**
17533600 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTCAA
17533617 A-GATTTTGGATTT-AA
1 AGGATTTTGGATTTCAA
*
17533632 TGGATTTTGGATTT
1 AGGATTTTGGATTT
17533646 TTAGGGGTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
16 24 0.62
17 15 0.38
ACGTcount: A:0.24, C:0.05, G:0.27, T:0.44
Consensus pattern (17 bp):
AGGATTTTGGATTTCAA
Found at i:17535651 original size:27 final size:27
Alignment explanation
Indices: 17535620--17535671 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
17535610 TGGGTAAGAT
* *
17535620 TCAAATGCACTTTTTCTAGTAACCCCA
1 TCAAATGCAATTTTTCTAATAACCCCA
17535647 TCAAATGCAATTTTTCTAATAACCC
1 TCAAATGCAATTTTTCTAATAACCC
17535672 TAACACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (27 bp):
TCAAATGCAATTTTTCTAATAACCCCA
Found at i:17537808 original size:10 final size:10
Alignment explanation
Indices: 17537775--17537815 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
17537765 TTGTTACTTG
17537775 TTTTAATTAT
1 TTTTAATTAT
* *
17537785 GTTTTAGTTTT
1 -TTTTAATTAT
17537796 TTTTAATTAT
1 TTTTAATTAT
17537806 TTTTAATTAT
1 TTTTAATTAT
17537816 CATTAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 18 0.69
11 8 0.31
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (10 bp):
TTTTAATTAT
Found at i:17540909 original size:144 final size:143
Alignment explanation
Indices: 17540652--17540910 Score: 308
Period size: 144 Copynumber: 1.8 Consensus size: 143
17540642 TTAAATTTTA
* * * * *
17540652 AAATACAAAAAATTATGAAATATTATAAAATTGATATCTGAAAAAATTTCATAAAAATCTGAACT
1 AAATACAAAAAATCATAAAATATTATAAAATTAAAATCTGAAAAAATGTCATAAAAATCTGAACT
* * * * **
17540717 CAAAAAAGTCAAATTATAAAAATATCTCTATAATGGTATTTTGGTAATTTCATATTTTTAGGGTA
66 CAAAAAAGTCAAATTACAAAAATATCTCCAAAAGGGTATTTTAATAATTTCATATTTTTAGGGTA
17540782 CTGTTGTGATTTC
131 CTGTTGTGATTTC
* * *
17540795 AAATACACTAAAAATCATAAAATATTATTAAATTAAAATCT-AAAAAATGTCATAAAAATTTGAG
1 AAATACA--AAAAATCATAAAATATTATAAAATTAAAATCTGAAAAAATGTCATAAAAATCTGAA
* * *
17540859 TTC-GAGAAGATCAAATTACAAAAATATC-CCAGAAAGGGTATTTTAATAATTT
64 CTCAAAAAAG-TCAAATTACAAAAATATCTCCA-AAAGGGTATTTTAATAATTT
17540911 TGTACTTTTC
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
143 13 0.14
144 55 0.58
145 27 0.28
ACGTcount: A:0.47, C:0.09, G:0.10, T:0.34
Consensus pattern (143 bp):
AAATACAAAAAATCATAAAATATTATAAAATTAAAATCTGAAAAAATGTCATAAAAATCTGAACT
CAAAAAAGTCAAATTACAAAAATATCTCCAAAAGGGTATTTTAATAATTTCATATTTTTAGGGTA
CTGTTGTGATTTC
Found at i:17542503 original size:51 final size:51
Alignment explanation
Indices: 17542444--17542544 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
17542434 TCATACCAAA
*
17542444 GGCATTTTCATTGTTTGTTTTTATCATATGCATTTCCCATGAAACCCTAAT
1 GGCATTTTCATTATTTGTTTTTATCATATGCATTTCCCATGAAACCCTAAT
* * *
17542495 GGCATTTTCGTTATTTTTTTTTATCATATGCATTTCTCATGAAACCCTAA
1 GGCATTTTCATTATTTGTTTTTATCATATGCATTTCCCATGAAACCCTAA
17542545 ACCACCATCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.47
Consensus pattern (51 bp):
GGCATTTTCATTATTTGTTTTTATCATATGCATTTCCCATGAAACCCTAAT
Found at i:17542577 original size:19 final size:19
Alignment explanation
Indices: 17542536--17542585 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
17542526 ATTTCTCATG
17542536 AAACCCTAAACCACCATCC
1 AAACCCTAAACCACCATCC
* ** *
17542555 AAACTCTAAACCATTATCT
1 AAACCCTAAACCACCATCC
17542574 AAACCCTAAACC
1 AAACCCTAAACC
17542586 TAAACCAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.18
Consensus pattern (19 bp):
AAACCCTAAACCACCATCC
Found at i:17542622 original size:13 final size:13
Alignment explanation
Indices: 17542573--17542622 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
17542563 AACCATTATC
17542573 TAAACCCTAAACC-
1 TAAACCC-AAACCT
17542586 TAAA-CCAAACCT
1 TAAACCCAAACCT
*
17542598 TAAACCCTAACCT
1 TAAACCCAAACCT
* *
17542611 TGATCCCAAACC
1 TAAACCCAAACC
17542623 AATCCTAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 5 0.16
12 6 0.19
13 20 0.65
ACGTcount: A:0.42, C:0.38, G:0.02, T:0.18
Consensus pattern (13 bp):
TAAACCCAAACCT
Found at i:17542634 original size:30 final size:31
Alignment explanation
Indices: 17542587--17542654 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
17542577 CCCTAAACCT
*
17542587 AAACCAAACCTTAAACCCTAACCTTGATCCC
1 AAACCAAACCTTAAACCCTAACCTAGATCCC
* * *
17542618 AAACCAATCC-TAAACCCTAAGCTAGATCCT
1 AAACCAAACCTTAAACCCTAACCTAGATCCC
17542648 AAACCAA
1 AAACCAA
17542655 CCAAACTCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
30 24 0.73
31 9 0.27
ACGTcount: A:0.43, C:0.35, G:0.04, T:0.18
Consensus pattern (31 bp):
AAACCAAACCTTAAACCCTAACCTAGATCCC
Found at i:17547359 original size:62 final size:61
Alignment explanation
Indices: 17547288--17547407 Score: 168
Period size: 62 Copynumber: 2.0 Consensus size: 61
17547278 GATTGTTGAG
* * * ** *
17547288 CCTCTACTTAGAGGAACCTTATTTTTTTTTTAAAGTTGTTGAGTTTCTGCTTAGAGGAGCCC
1 CCTCTACTTAGAGGAACCTTATTATTTTTCT-AAGTTATTGAGCCTCTACTTAGAGGAGCCC
*
17547350 CCTCTACTTAGAGGAGCCTTATTATTTTTCTAAGTTATTGAGCCTCTACTTAGAGGAG
1 CCTCTACTTAGAGGAACCTTATTATTTTTCTAAGTTATTGAGCCTCTACTTAGAGGAG
17547408 TCTTGTTCAT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
61 23 0.45
62 28 0.55
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (61 bp):
CCTCTACTTAGAGGAACCTTATTATTTTTCTAAGTTATTGAGCCTCTACTTAGAGGAGCCC
Found at i:17547435 original size:43 final size:42
Alignment explanation
Indices: 17547350--17547622 Score: 176
Period size: 43 Copynumber: 6.4 Consensus size: 42
17547340 AGAGGAGCCC
*
17547350 CCTCTACTTAGAGGAGCCTTATT-ATTTTTCT-AAGTTATTGAG
1 CCTCTACTTAGAGGAGCCTT-TTCATTTTT-TAAAGTCATTGAG
* *
17547392 CCTCTACTTAGAGGAGTCTTGTTCATTTTTTAAAGTCAGTGAG
1 CCTCTACTTAGAGGAGCCTT-TTCATTTTTTAAAGTCATTGAG
* * *
17547435 CCTCTGA-TTAGAGAAGCCTTATCTATTTTTCAAAGTCATTGAG
1 CCTCT-ACTTAGAGGAGCCTTTTC-ATTTTTTAAAGTCATTGAG
* * * * ** *
17547478 CCTCTGCTTAGAAGAGCCCTATTT-ATTTGTAAAAGTTGTTGAA
1 CCTCTACTTAGAGGAG-CCT-TTTCATTTTTTAAAGTCATTGAG
* * * * ** *
17547521 CCTATGCTTAGAGGAGCTTTATTTACCTTTTAAAGTCATTTAG
1 CCTCTACTTAGAGGAGCCTT-TTCATTTTTTAAAGTCATTGAG
* ** * * * *
17547564 CCTTTGTTTAGAGAAGCCTTATTTATTTTCTAAAGTCATTGAA
1 CCTCTACTTAGAGGAGCCTT-TTCATTTTTTAAAGTCATTGAG
* *
17547607 CCTCTATTTAAAGGAG
1 CCTCTACTTAGAGGAG
17547623 TTTTGTAAGT
Statistics
Matches: 180, Mismatches: 42, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
41 1 0.01
42 28 0.16
43 145 0.81
44 4 0.02
45 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (42 bp):
CCTCTACTTAGAGGAGCCTTTTCATTTTTTAAAGTCATTGAG
Found at i:17547513 original size:86 final size:85
Alignment explanation
Indices: 17547357--17547591 Score: 224
Period size: 86 Copynumber: 2.7 Consensus size: 85
17547347 CCCCCTCTAC
* * * * * * * *
17547357 TTAGAGGAGCCTTATTATTTTTCTAAGTTATTGAGCCTCTACTTAGAGGAGTCTTGTTCATTTTT
1 TTAGAGGAGCCTTATTATTTTTCAAAGTCATTGAGCCTCTGCTTAGAAGAGCCTTATTTATTTGT
* * *
17547422 TAAAGTCAG-TGAGCCTCTGA
66 AAAAGT-AGTTGAACCTATGA
* *
17547442 TTAGAGAAGCCTTATCTATTTTTCAAAGTCATTGAGCCTCTGCTTAGAAGAGCCCTATTTATTTG
1 TTAGAGGAGCCTTAT-TATTTTTCAAAGTCATTGAGCCTCTGCTTAGAAGAGCCTTATTTATTTG
* *
17547507 TAAAAGTTGTTGAACCTATGC
65 TAAAAGTAGTTGAACCTATGA
* * * * *
17547528 TTAGAGGAGCTTTATTTACCTTTT-AAAGTCATTTAGCCTTTGTTTAG-AGAAGCCTTATTTATT
1 TTAGAGGAGCCTTA-TTA-TTTTTCAAAGTCATTGAGCCTCTGCTTAGAAG-AGCCTTATTTATT
17547591 T
63 T
17547592 TCTAAAGTCA
Statistics
Matches: 123, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
85 17 0.14
86 101 0.82
87 5 0.04
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (85 bp):
TTAGAGGAGCCTTATTATTTTTCAAAGTCATTGAGCCTCTGCTTAGAAGAGCCTTATTTATTTGT
AAAAGTAGTTGAACCTATGA
Found at i:17548619 original size:17 final size:17
Alignment explanation
Indices: 17548597--17548636 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
17548587 GATTACTTGG
* *
17548597 TATTTTGTTTATTTATT
1 TATTTTCTTTATGTATT
17548614 TATTTTCTTTATGTATT
1 TATTTTCTTTATGTATT
17548631 TATTTT
1 TATTTT
17548637 TAAAGTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (17 bp):
TATTTTCTTTATGTATT
Found at i:17559145 original size:43 final size:43
Alignment explanation
Indices: 17559067--17559289 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 43
17559057 GTTGAGGAGT
* * *
17559067 TTTATTTATTTTTCAAAAGTTGTTGAGCTTCTGCTTAGAAGAGC
1 TTTATTTATTTTTC-AAAGTTATTGAGCCTCTACTTAGAAGAGC
* * * * * *
17559111 TTTATTTATTTTTCAAAGTTGTTGAGCTTTTGCTTAGAGGAAC
1 TTTATTTATTTTTCAAAGTTATTGAGCCTCTACTTAGAAGAGC
* * * *
17559154 GTTATTTATTTTGCAAAAATTATTGAGCCTCTACTTAGAGGAGC
1 TTTATTTATTTTTC-AAAGTTATTGAGCCTCTACTTAGAAGAGC
* * * * * *
17559198 ATTATTTATTTTTCAAAGTCAATGAGCCTTTATTTAAAAGAGC
1 TTTATTTATTTTTCAAAGTTATTGAGCCTCTACTTAGAAGAGC
* * * **
17559241 TTTATTTATTTTTCAAAATCATTGAACCTCTGTTTAGAAGA-C
1 TTTATTTATTTTTCAAAGTTATTGAGCCTCTACTTAGAAGAGC
17559283 TTT-TTTA
1 TTTATTTA
17559290 GGTTATTCAA
Statistics
Matches: 151, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
41 4 0.03
42 4 0.03
43 94 0.62
44 49 0.32
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (43 bp):
TTTATTTATTTTTCAAAGTTATTGAGCCTCTACTTAGAAGAGC
Found at i:17559191 original size:44 final size:44
Alignment explanation
Indices: 17559068--17559214 Score: 197
Period size: 44 Copynumber: 3.4 Consensus size: 44
17559058 TTGAGGAGTT
* *
17559068 TTATTTATTTTTCAAAAGTTGTTGAGCTTCTGCTTAGAAGAGCT
1 TTATTTATTTTTCAAAAGTTGTTGAGCTTCTGCTTAGAGGAGCA
* * *
17559112 TTATTTATTTTTC-AAAGTTGTTGAGCTTTTGCTTAGAGGAACG
1 TTATTTATTTTTCAAAAGTTGTTGAGCTTCTGCTTAGAGGAGCA
* * * * *
17559155 TTATTTATTTTGCAAAAATTATTGAGCCTCTACTTAGAGGAGCA
1 TTATTTATTTTTCAAAAGTTGTTGAGCTTCTGCTTAGAGGAGCA
17559199 TTATTTATTTTTCAAA
1 TTATTTATTTTTCAAA
17559215 GTCAATGAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 38 0.43
44 51 0.57
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (44 bp):
TTATTTATTTTTCAAAAGTTGTTGAGCTTCTGCTTAGAGGAGCA
Found at i:17559246 original size:87 final size:87
Alignment explanation
Indices: 17559067--17559281 Score: 234
Period size: 87 Copynumber: 2.5 Consensus size: 87
17559057 GTTGAGGAGT
* * * * * **
17559067 TTTATTTATTTTTCAAAAGTTGTTGAGCTTCTGCTTAGAAGAGCTTTATTTATTTTTCAAAGTTG
1 TTTATTTATTTTTCAAAAATTATTGAGCCTCTACTTAGAAGAGCATTATTTATTTTTCAAAGTCA
* * * * *
17559132 TTGAGCTTTTGCTTAGAGGAAC
66 ATGAGCCTTTACTTAAAAGAAC
* * *
17559154 GTTATTTATTTTGCAAAAATTATTGAGCCTCTACTTAGAGGAGCATTATTTATTTTTCAAAGTCA
1 TTTATTTATTTTTCAAAAATTATTGAGCCTCTACTTAGAAGAGCATTATTTATTTTTCAAAGTCA
* *
17559219 ATGAGCCTTTATTTAAAAGAGC
66 ATGAGCCTTTACTTAAAAGAAC
* * **
17559241 TTTATTTATTTTTC-AAAATCATTGAACCTCTGTTTAGAAGA
1 TTTATTTATTTTTCAAAAATTATTGAGCCTCTACTTAGAAGA
17559282 CTTTTTTAGG
Statistics
Matches: 104, Mismatches: 24, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
86 22 0.21
87 82 0.79
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (87 bp):
TTTATTTATTTTTCAAAAATTATTGAGCCTCTACTTAGAAGAGCATTATTTATTTTTCAAAGTCA
ATGAGCCTTTACTTAAAAGAAC
Found at i:17559860 original size:19 final size:18
Alignment explanation
Indices: 17559836--17559882 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
17559826 TTCTAATGAC
17559836 TTTTCGACA-ACAATCCCAA
1 TTTTCGACAGA-AAT-CCAA
*
17559855 TTTTCGATGAGAAATCCAA
1 TTTTCGA-CAGAAATCCAA
17559874 TTTTCGACA
1 TTTTCGACA
17559883 TTAGTTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 18 0.75
20 4 0.17
21 1 0.04
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (18 bp):
TTTTCGACAGAAATCCAA
Found at i:17567282 original size:6 final size:6
Alignment explanation
Indices: 17567271--17567303 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
17567261 AGAATAGATC
17567271 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
17567304 TTGAAAAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Done.