Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 9 of 113
Found at i:2581457 original size:51 final size:51
Alignment explanation
Indices: 2581350--2581483 Score: 133
Period size: 51 Copynumber: 2.6 Consensus size: 51
2581340 ATATTTTTTA
** ** *
2581350 GATTTAATTCCAAAATCAATTGGCATTAAAAATGACGTAGAGAGATTATCGT
1 GATTTAATTCCAAAATCAATTCACATT-AAAATGACAAAGAGAGATTATCGG
* * * *
2581402 GATTTAATTCCATAATCAATTCACATTAAAATGATAAAGAGAGATTTTTGG
1 GATTTAATTCCAAAATCAATTCACATTAAAATGACAAAGAGAGATTATCGG
* * * **
2581453 GATTTGATTTCAGAATCAATTCTTATTAAAA
1 GATTTAATTCCAAAATCAATTCACATTAAAA
2581484 CGAAAATAAA
Statistics
Matches: 68, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
51 44 0.65
52 24 0.35
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.35
Consensus pattern (51 bp):
GATTTAATTCCAAAATCAATTCACATTAAAATGACAAAGAGAGATTATCGG
Found at i:2582034 original size:14 final size:14
Alignment explanation
Indices: 2582001--2582027 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2581991 TGTTTTTCTT
2582001 ATTTTGTTTATTTA
1 ATTTTGTTTATTTA
2582015 ATTTTGTTTATTT
1 ATTTTGTTTATTT
2582028 TTATTTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (14 bp):
ATTTTGTTTATTTA
Found at i:2593672 original size:5 final size:5
Alignment explanation
Indices: 2593662--2593691 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
2593652 ATGATTTCGT
2593662 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
2593692 CCTCCGATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:2594609 original size:52 final size:51
Alignment explanation
Indices: 2594504--2594643 Score: 133
Period size: 52 Copynumber: 2.7 Consensus size: 51
2594494 GTAAAAGAAG
* ** * *
2594504 AATT-TAAAAAAAAAAAAATTCTTAATAGGTAAGTTTGACTTATAAGAAAAA
1 AATTCTAAAAGAAAAAGGATTCTTAATAGGTAAATTTAACTTATAAG-AAAA
* * *
2594555 AATT-TTAAGGGAAAAGAGATTCTTAATAGGTAAATTTAACTTACATAAG-AAA
1 AATTCTAAAAGAAAAAG-GATTCTTAATAGGTAAATTTAACTT--ATAAGAAAA
* *
2594607 AATTCTAAAAGAAAAAGGATTCTTAATCGGCAAATTT
1 AATTCTAAAAGAAAAAGGATTCTTAATAGGTAAATTT
2594644 GTATTGTTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
51 11 0.15
52 47 0.65
53 9 0.12
54 5 0.07
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.30
Consensus pattern (51 bp):
AATTCTAAAAGAAAAAGGATTCTTAATAGGTAAATTTAACTTATAAGAAAA
Found at i:2594843 original size:22 final size:22
Alignment explanation
Indices: 2594809--2594862 Score: 90
Period size: 22 Copynumber: 2.4 Consensus size: 22
2594799 TGAGATGGTC
*
2594809 GGTATGATGTATGGGAGCATATG
1 GGTATG-TGTATGAGAGCATATG
2594832 GGTATGTGTATGAGAGCATATG
1 GGTATGTGTATGAGAGCATATG
2594854 GGTATGTGT
1 GGTATGTGT
2594863 TTGATTATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 24 0.80
23 6 0.20
ACGTcount: A:0.24, C:0.04, G:0.39, T:0.33
Consensus pattern (22 bp):
GGTATGTGTATGAGAGCATATG
Found at i:2597645 original size:14 final size:13
Alignment explanation
Indices: 2597630--2597673 Score: 63
Period size: 12 Copynumber: 3.4 Consensus size: 13
2597620 AAAATTTGTA
*
2597630 AAAAATTTTTATT
1 AAAAATTTTTAAT
2597643 AAAAATTATTTAAT
1 AAAAATT-TTTAAT
2597657 AAAAA-TTTTAAT
1 AAAAATTTTTAAT
2597669 AAAAA
1 AAAAA
2597674 ATTTAAACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 11 0.38
13 8 0.28
14 10 0.34
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
AAAAATTTTTAAT
Found at i:2597648 original size:13 final size:13
Alignment explanation
Indices: 2597630--2597677 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
2597620 AAAATTTGTA
2597630 AAAAATTTTTATT
1 AAAAATTTTTATT
*
2597643 AAAAATTATTTAAT
1 AAAAATT-TTTATT
* *
2597657 AAAAATTTTAATA
1 AAAAATTTTTATT
2597670 AAAAATTT
1 AAAAATTT
2597678 AAACTAATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAAATTTTTATT
Found at i:2597668 original size:12 final size:12
Alignment explanation
Indices: 2597620--2597679 Score: 59
Period size: 12 Copynumber: 4.8 Consensus size: 12
2597610 TTTTTTGAGT
2597620 AAAATTTGTAA-A
1 AAAATTT-TAATA
* *
2597632 AAATTTTTATTA
1 AAAATTTTAATA
2597644 AAAATTATTTAATA
1 AAAA-T-TTTAATA
2597658 AAAATTTTAATA
1 AAAATTTTAATA
*
2597670 AAAAATTTAA
1 AAAATTTTAA
2597680 ACTAATAGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
11 2 0.05
12 26 0.65
13 2 0.05
14 10 0.25
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (12 bp):
AAAATTTTAATA
Found at i:2599250 original size:17 final size:17
Alignment explanation
Indices: 2599228--2599261 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2599218 TGAATTTTTT
2599228 ATTTAATTGTATGTTTG
1 ATTTAATTGTATGTTTG
2599245 ATTTAATTGTATGTTTG
1 ATTTAATTGTATGTTTG
2599262 TAATTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.59
Consensus pattern (17 bp):
ATTTAATTGTATGTTTG
Found at i:2610898 original size:33 final size:33
Alignment explanation
Indices: 2610856--2610921 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
2610846 TGCTTTAAGA
2610856 AAACTTTTTGACAAGATTTATCTAAGTCTTAAT
1 AAACTTTTTGACAAGATTTATCTAAGTCTTAAT
*
2610889 AAACTTTTTGACAAGATTTGTCTAAGTCTTAAT
1 AAACTTTTTGACAAGATTTATCTAAGTCTTAAT
2610922 GGTCAAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (33 bp):
AAACTTTTTGACAAGATTTATCTAAGTCTTAAT
Found at i:2611940 original size:99 final size:99
Alignment explanation
Indices: 2611578--2611939 Score: 223
Period size: 99 Copynumber: 3.7 Consensus size: 99
2611568 ATAGCAATAC
* * * * * * * * *
2611578 ATTTTTTTAATAGTGATATTCGAGTTTCTTT-T-GATGACGATATCTAAAATTATTTACATATTT
1 ATTTTTTCAATAATAATATTCAAATTTCTTTCTAG-TGACGATATCCAAAATTAATTATATTTTT
* * * * * * *
2611641 TCAGTAATGATATTCTAAGTGTTAAGATTTAAATTAT
65 TGA-CAATAATATTCGAA-TGTTAAAACTTGAATTAT
* * * * * * * *
2611678 ATTTTCTT-GATAATAATATTTAAGTTT-TCTCTGGTGACAATATCCAAAATCATTTATATCTTT
1 ATTTT-TTCAATAATAATATTCAAATTTCTTTCTAGTGACGATATCCAAAATTAATTATAT-TTT
* *** * ** * * *
2611741 TCGATTGTGATATTTAAATATTAAAGCTTGAATTGT
64 TTGACAATAATATTCGAATGTTAAAACTTGAATTAT
** * * *
2611777 ATTTTTTCAATGGTAATATTCAAATTTTTTTTTAGTGACGATATCCAAAATTAATTGTATTTTTT
1 ATTTTTTCAATAATAATATTCAAATTTCTTTCTAGTGACGATATCCAAAATTAATTATATTTTTT
2611842 GACAATAATATTCGAATGTTAAAACTTGAATTAT
66 GACAATAATATTCGAATGTTAAAACTTGAATTAT
** * ** *
2611876 ATTTTTTTTATAATAATATTCAAATTTCTTTCTA-TGATGA-ATCTGAAATTATTTATATCTTTT
1 ATTTTTTCAATAATAATATTCAAATTTCTTTCTAGTGACGATATCCAAAATTAATTATAT-TTTT
2611939 T
65 T
2611940 TATTATGATA
Statistics
Matches: 199, Mismatches: 56, Indels: 16
0.73 0.21 0.06
Matches are distributed among these distances:
97 14 0.07
98 12 0.06
99 90 0.45
100 76 0.38
101 7 0.04
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (99 bp):
ATTTTTTCAATAATAATATTCAAATTTCTTTCTAGTGACGATATCCAAAATTAATTATATTTTTT
GACAATAATATTCGAATGTTAAAACTTGAATTAT
Found at i:2616113 original size:19 final size:19
Alignment explanation
Indices: 2616091--2616128 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
2616081 AAAATTTATA
*
2616091 TTAAA-TTTATAAATCGAAT
1 TTAAACTTTAAAAAT-GAAT
2616110 TTAAACTTTAAAAATGAAT
1 TTAAACTTTAAAAATGAAT
2616129 AATTTAACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.39
Consensus pattern (19 bp):
TTAAACTTTAAAAATGAAT
Found at i:2630342 original size:12 final size:12
Alignment explanation
Indices: 2630325--2630350 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2630315 GGGCTACAGC
2630325 ATAACCCAGTGG
1 ATAACCCAGTGG
2630337 ATAACCCAGTGG
1 ATAACCCAGTGG
2630349 AT
1 AT
2630351 CAGCAAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (12 bp):
ATAACCCAGTGG
Found at i:2636369 original size:26 final size:25
Alignment explanation
Indices: 2636339--2636391 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
2636329 TATATAATTT
*
2636339 ATATACTATAAATGAATCAAATAATA
1 ATATACTATAAATAAAT-AAATAATA
* * *
2636365 ATATATTATTAATAAATAAATATTA
1 ATATACTATAAATAAATAAATAATA
2636390 AT
1 AT
2636392 CATTAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
ATATACTATAAATAAATAAATAATA
Found at i:2636590 original size:22 final size:22
Alignment explanation
Indices: 2636562--2636616 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
2636552 CAATTGAAAA
*
2636562 AAAAAAAGAAAGCTTCACCTTT
1 AAAAAAAGAAAGCATCACCTTT
* * *
2636584 AAAAAAAAAAATCATCACTTTT
1 AAAAAAAGAAAGCATCACCTTT
*
2636606 AAAAAAGGAAA
1 AAAAAAAGAAA
2636617 ACTTGAGTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (22 bp):
AAAAAAAGAAAGCATCACCTTT
Found at i:2638477 original size:16 final size:15
Alignment explanation
Indices: 2638452--2638481 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
2638442 CGATCGATTG
2638452 AAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAC
2638467 AAAAAAGAAAAAAAA
1 AAAAAA-AAAAAAAA
2638482 GTCACAGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.93, C:0.03, G:0.03, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAC
Found at i:2648244 original size:105 final size:105
Alignment explanation
Indices: 2648054--2648255 Score: 334
Period size: 105 Copynumber: 1.9 Consensus size: 105
2648044 GGCAGGGTAG
* *
2648054 TTTTGCAGCTGAGAAAATGAATGGTGACCAGCGATCTGTGAGATACCAGCAGTAAACGATGGCAT
1 TTTTGCAGCTGAGAAAATGAATGATGACCAGCGATCTGTGAGATACCACCAGTAAACGATGGCAT
* *
2648119 CCTTGGATTGTTTTGTTGTGCTGAGGCCTGGAGGGTTTTC
66 CCTCGGATTGTTTTGCTGTGCTGAGGCCTGGAGGGTTTTC
* *
2648159 TTTTGCAGCTGAGAAAATGAATGATGACCAGCGATCTGTGAGATGCCACCAGTAATCGATGGCAT
1 TTTTGCAGCTGAGAAAATGAATGATGACCAGCGATCTGTGAGATACCACCAGTAAACGATGGCAT
2648224 CCTCGGATT-TCTTTGCTGTGCTGAGGCCTGGA
66 CCTCGGATTGT-TTTGCTGTGCTGAGGCCTGGA
2648256 ATGTAATAGA
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
104 1 0.01
105 89 0.99
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (105 bp):
TTTTGCAGCTGAGAAAATGAATGATGACCAGCGATCTGTGAGATACCACCAGTAAACGATGGCAT
CCTCGGATTGTTTTGCTGTGCTGAGGCCTGGAGGGTTTTC
Found at i:2650055 original size:18 final size:19
Alignment explanation
Indices: 2650022--2650058 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
2650012 CGAATTATTA
2650022 ATTTATTAATTAATATAAT
1 ATTTATTAATTAATATAAT
*
2650041 ATTTATTTA-TAATATAAT
1 ATTTATTAATTAATATAAT
2650059 TAATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTATTAATTAATATAAT
Found at i:2655835 original size:14 final size:14
Alignment explanation
Indices: 2655827--2655866 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
2655817 AATATTATTT
2655827 TTTAAATATAAATA
1 TTTAAATATAAATA
2655841 TTTAAATATATAATTA
1 TTTAAATATA-AA-TA
*
2655857 TATAAATATA
1 TTTAAATATA
2655867 TATAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 2 0.09
16 11 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTAAATATAAATA
Found at i:2655848 original size:8 final size:8
Alignment explanation
Indices: 2655832--2655868 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
2655822 TATTTTTTAA
2655832 ATATAAAT
1 ATATAAAT
*
2655840 ATTTAAAT
1 ATATAAAT
*
2655848 ATATAATT
1 ATATAAAT
2655856 ATATAAAT
1 ATATAAAT
2655864 ATATA
1 ATATA
2655869 TAAATAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATATAAAT
Found at i:2655875 original size:14 final size:14
Alignment explanation
Indices: 2655829--2655876 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
2655819 TATTATTTTT
* *
2655829 TAAATATAAATATT
1 TAAATATATATATA
2655843 TAAATATATAATTATA
1 TAAATATAT-A-TATA
*
2655859 TAAATATATATAAA
1 TAAATATATATATA
2655873 TAAA
1 TAAA
2655877 AAAAATTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 15 0.52
15 2 0.07
16 12 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
TAAATATATATATA
Found at i:2661768 original size:30 final size:30
Alignment explanation
Indices: 2661732--2661790 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
2661722 ACGCTGTTGT
2661732 TATTTTGGCTTTTGTTAG-TTTGTTGTAGCG
1 TATTTTGGC-TTTGTTAGTTTTGTTGTAGCG
2661762 TATTTTGGCTTTGTTAGTTTTGTTGTAGC
1 TATTTTGGCTTTGTTAGTTTTGTTGTAGC
2661791 TCCTCAGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.10, C:0.07, G:0.25, T:0.58
Consensus pattern (30 bp):
TATTTTGGCTTTGTTAGTTTTGTTGTAGCG
Found at i:2666341 original size:23 final size:24
Alignment explanation
Indices: 2666305--2666361 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
2666295 TGAAATACTC
* *
2666305 TTATAAAAAAAAATACTACAAAGG
1 TTATAAAAATAAATACTACAAAAG
*
2666329 TTAT-AAAATAAATATTACAAAAG
1 TTATAAAAATAAATACTACAAAAG
*
2666352 TTATGAAAAT
1 TTATAAAAAT
2666362 GATATGTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 20 0.69
24 9 0.31
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (24 bp):
TTATAAAAATAAATACTACAAAAG
Found at i:2673824 original size:33 final size:33
Alignment explanation
Indices: 2673777--2673909 Score: 130
Period size: 33 Copynumber: 4.1 Consensus size: 33
2673767 CCAGAGAAGA
* * *
2673777 AGGAGGAGCCAAAGAAGGAAGAACCCAAGAAAG
1 AGGAGGAACAAAAGAAAGAAGAACCCAAGAAAG
* *
2673810 AGGAGGAACAAAAGAAAGAAGAGCCCAAGAAGG
1 AGGAGGAACAAAAGAAAGAAGAACCCAAGAAAG
* * * * *
2673843 AAGAGGAGCAGAAGAAAGAAGAGCCTAAG--A-
1 AGGAGGAACAAAAGAAAGAAGAACCCAAGAAAG
*
2673873 AGGAAGAACCAAAA-AAAGAAGAACCCAAGAAAG
1 AGGAGGAA-CAAAAGAAAGAAGAACCCAAGAAAG
2673906 AGGA
1 AGGA
2673910 AGAGAAGAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
30 18 0.22
31 4 0.05
32 1 0.01
33 57 0.71
ACGTcount: A:0.56, C:0.13, G:0.31, T:0.01
Consensus pattern (33 bp):
AGGAGGAACAAAAGAAAGAAGAACCCAAGAAAG
Found at i:2673845 original size:15 final size:15
Alignment explanation
Indices: 2673773--2673903 Score: 73
Period size: 15 Copynumber: 8.3 Consensus size: 15
2673763 AGAGCCAGAG
* *
2673773 AAGAAGGAGGAGCCA
1 AAGAAGGAAGAACCA
2673788 AAGAAGGAAGAACCCA
1 AAGAAGGAAGAA-CCA
* * *
2673804 AGAAAGAGGAGGAACAA
1 A-AGA-AGGAAGAACCA
* * *
2673821 AAGAAAGAAGAGCCC
1 AAGAAGGAAGAACCA
*
2673836 AAGAAGGAAGAGGAGCA
1 AAGAAGGAAGA--ACCA
* * *
2673853 GAAGAAAGAAGAGCCT
1 -AAGAAGGAAGAACCA
2673869 AAGAAGGAAGAACCA
1 AAGAAGGAAGAACCA
* * *
2673884 AAAAAAGAAGAACCC
1 AAGAAGGAAGAACCA
2673899 AAGAA
1 AAGAA
2673904 AGAGGAAGAG
Statistics
Matches: 84, Mismatches: 26, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
15 54 0.64
16 7 0.08
17 6 0.07
18 17 0.20
ACGTcount: A:0.56, C:0.13, G:0.30, T:0.01
Consensus pattern (15 bp):
AAGAAGGAAGAACCA
Found at i:2673846 original size:18 final size:18
Alignment explanation
Indices: 2673825--2673880 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
2673815 GAACAAAAGA
2673825 AAGAAGAGCCCAAGAAGG
1 AAGAAGAGCCCAAGAAGG
* *
2673843 AAGAGGAG--C-AGAAGA
1 AAGAAGAGCCCAAGAAGG
*
2673858 AAGAAGAGCCTAAGAAGG
1 AAGAAGAGCCCAAGAAGG
2673876 AAGAA
1 AAGAA
2673881 CCAAAAAAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
18 17 0.57
ACGTcount: A:0.54, C:0.11, G:0.34, T:0.02
Consensus pattern (18 bp):
AAGAAGAGCCCAAGAAGG
Found at i:2673905 original size:15 final size:15
Alignment explanation
Indices: 2673788--2673906 Score: 76
Period size: 15 Copynumber: 7.5 Consensus size: 15
2673778 GGAGGAGCCA
*
2673788 AAGAAGGAAGAACCC
1 AAGAAAGAAGAACCC
**
2673803 AAGAAAGAGGAGGAACAA
1 AAGAAAGA--A-GAACCC
*
2673821 AAGAAAGAAGAGCCC
1 AAGAAAGAAGAACCC
* **
2673836 AAGAAGGAAGAGGAGCAG
1 AAGAAAGAAGA--A-CCC
* *
2673854 AAGAAAGAAGAGCCT
1 AAGAAAGAAGAACCC
* *
2673869 AAGAAGGAAGAACCA
1 AAGAAAGAAGAACCC
*
2673884 AAAAAAGAAGAACCC
1 AAGAAAGAAGAACCC
2673899 AAGAAAGA
1 AAGAAAGA
2673907 GGAAGAGAAG
Statistics
Matches: 77, Mismatches: 21, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
15 52 0.68
16 1 0.01
17 1 0.01
18 23 0.30
ACGTcount: A:0.58, C:0.13, G:0.29, T:0.01
Consensus pattern (15 bp):
AAGAAAGAAGAACCC
Found at i:2676530 original size:2 final size:2
Alignment explanation
Indices: 2676523--2676562 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
2676513 TGGTAATGAG
*
2676523 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2676563 GGAAAGTAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2677176 original size:2 final size:2
Alignment explanation
Indices: 2677164--2677197 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
2677154 TGCTAGTATC
2677164 AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2677198 CACCTAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2679899 original size:20 final size:20
Alignment explanation
Indices: 2679861--2679899 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2679851 TTTGCAAGTC
* * *
2679861 AAAACTCAAATTAATATAAA
1 AAAACCCAAATGAAAATAAA
2679881 AAAACCCAAATGAAAATAA
1 AAAACCCAAATGAAAATAA
2679900 GAATTGACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.67, C:0.13, G:0.03, T:0.18
Consensus pattern (20 bp):
AAAACCCAAATGAAAATAAA
Found at i:2686446 original size:27 final size:27
Alignment explanation
Indices: 2686398--2686451 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
2686388 TTGGAATAAA
*
2686398 TTTAAAGAAATTTCTCACTTAAAGATTT
1 TTTAAAGAAATTTATCACTTAAA-ATTT
* *
2686426 TTTAAA-AAATTTATTATTTAAAATTT
1 TTTAAAGAAATTTATCACTTAAAATTT
2686452 CTAATAATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.17
27 13 0.57
28 6 0.26
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (27 bp):
TTTAAAGAAATTTATCACTTAAAATTT
Found at i:2686463 original size:171 final size:171
Alignment explanation
Indices: 2686182--2686648 Score: 579
Period size: 171 Copynumber: 2.7 Consensus size: 171
2686172 ATGATAACTA
* * * * * *
2686182 TTTTCTTAAAGTTTCATTTAAATTTTTTCACCATTTGTG-ATAAATTTAAAGAAAATTT-TCACC
1 TTTTATTAAAATTTCATCTAAATTATTCCACCATTTG-GAATAAATTTAAAG-AAATTTCTCACT
* * * *
2686245 TAGAGATTTTTTTAGAAATTTACATT-TTTGAAATTTCTAAGAATCTTA-CTATTGGATAATTGT
64 TAGAGATTTTTTAAAAAATTT--ATTATTTAAAATTTCTAAGAATCTTATC-ATTGGATAATTAT
**
2686308 TAAATATTTTTCAACCAAATTTTTATTTGGAAAAGAATACAATTAC
126 TAAATATTTTTCAACCAAATTTTTATTTAAAAAAGAATACAATTAC
*
2686354 TTTTATTAAAATTTCATCTAAATTATTCCACAATTTGGAATAAATTTAAAGAAATTTCTCACTTA
1 TTTTATTAAAATTTCATCTAAATTATTCCACCATTTGGAATAAATTTAAAGAAATTTCTCACTTA
* * *
2686419 AAGATTTTTTAAAAAATTTATTATTTAAAATTTCTAATAATCTTATCATTGGATAATTATTACAT
66 GAGATTTTTTAAAAAATTTATTATTTAAAATTTCTAAGAATCTTATCATTGGATAATTATTAAAT
* *
2686484 ATTTTTCAATCAAATTTTTATTTAAAAAATAATACAATTAC
131 ATTTTTCAACCAAATTTTTATTTAAAAAAGAATACAATTAC
*
2686525 TTTTATTAAAATTTCATCTAAATTATTCCACCATTT-GAGATAAATTTAGAA-AATTTTCTCACT
1 TTTTATTAAAATTTCATCTAAATTATTCCACCATTTGGA-ATAAATTTA-AAGAAATTTCTCACT
* * * *** *
2686588 CAGAGATTTCTTAACAAATTTGCCATTTAAAATTTTTAAGAATCTTATCATTAGG-TAATTA
64 TAGAGATTTTTTAAAAAATTTATTATTTAAAATTTCTAAGAATCTTATCATT-GGATAATTA
2686649 GTAGTTAATT
Statistics
Matches: 259, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
170 5 0.02
171 184 0.71
172 70 0.27
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (171 bp):
TTTTATTAAAATTTCATCTAAATTATTCCACCATTTGGAATAAATTTAAAGAAATTTCTCACTTA
GAGATTTTTTAAAAAATTTATTATTTAAAATTTCTAAGAATCTTATCATTGGATAATTATTAAAT
ATTTTTCAACCAAATTTTTATTTAAAAAAGAATACAATTAC
Found at i:2688049 original size:44 final size:44
Alignment explanation
Indices: 2688005--2688144 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 44
2687995 TAAAAACTCT
*
2688005 TCTAAACATAGGCTCCATAATTTTTAAAAAATAAATAAAGC-TC
1 TCTAAACAAAGGCTCCATAATTTTTAAAAAATAAATAAAGCTTC
* * * * *
2688048 TTCTAAGCAAAGGCT-CATGACTTCTAAAAAAATAAATAAGGCTTC
1 -TCTAAACAAAGGCTCCAT-AATTTTTAAAAAATAAATAAAGCTTC
* * * *
2688093 TCTAAATAGAA-GCTCAACAA-CTTTAGAAAAATAAATAAAGCTTC
1 TCTAAACA-AAGGCTCCATAATTTTTA-AAAAATAAATAAAGCTTC
2688137 TCTAAACA
1 TCTAAACA
2688145 GAGACTCACA
Statistics
Matches: 75, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
43 5 0.07
44 65 0.87
45 5 0.07
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.27
Consensus pattern (44 bp):
TCTAAACAAAGGCTCCATAATTTTTAAAAAATAAATAAAGCTTC
Found at i:2688124 original size:88 final size:88
Alignment explanation
Indices: 2688027--2688226 Score: 246
Period size: 88 Copynumber: 2.3 Consensus size: 88
2688017 CTCCATAATT
* * *
2688027 TTTA-AAAAATAAATAAAGCTCTTCTAAGCAAAGGCTCA-TGACTTCTAAAAAAATAAATAAGGC
1 TTTAGAAAAATAAATAAAGCTCTTCTAAACAAAGACTCACAG-CTTCTAAAAAAATAAATAAGG-
2688090 TTC-TCTAAATAGAAGCTCAACAAC
64 TTCATCTAAATAGAAGCTCAACAAC
* * *
2688114 TTTAGAAAAATAAATAAAGCT-TCTCTAAACAGAGACTCACAGCTTTTAGAAAAATAAATAAGGT
1 TTTAGAAAAATAAATAAAGCTCT-TCTAAACAAAGACTCACAGCTTCTAAAAAAATAAATAAGGT
* *
2688178 TCATCTAAATAGAGGCTTAACAAC
65 TCATCTAAATAGAAGCTCAACAAC
* * *
2688202 TTTTGAAAAGTAAATAAGGCTCTTC
1 TTTAGAAAAATAAATAAAGCTCTTC
2688227 GATAATCATG
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
87 8 0.08
88 87 0.90
89 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (88 bp):
TTTAGAAAAATAAATAAAGCTCTTCTAAACAAAGACTCACAGCTTCTAAAAAAATAAATAAGGTT
CATCTAAATAGAAGCTCAACAAC
Found at i:2688162 original size:44 final size:45
Alignment explanation
Indices: 2688026--2688218 Score: 159
Period size: 44 Copynumber: 4.4 Consensus size: 45
2688016 GCTCCATAAT
* * * * **
2688026 TTTTA-AAAAATAAATAAAGC-TCTTCTAAGCAAAGGCTCATGAC
1 TTTTAGAAAAATAAATAAAGCTTCATCTAAACAGAGACTCACAAC
* * * *
2688069 TTCTAAAAAAATAAATAAGGCTTC-TCTAAATAGA-AGCTCAACAAC
1 TTTTAGAAAAATAAATAAAGCTTCATCTAAACAGAGA-CTC-ACAAC
*
2688114 -TTTAGAAAAATAAATAAAGCTTC-TCTAAACAGAGACTCACAGC
1 TTTTAGAAAAATAAATAAAGCTTCATCTAAACAGAGACTCACAAC
* * * *
2688157 TTTTAGAAAAATAAAT-AAGGTTCATCTAAATAGAGGCTTAACAAC
1 TTTTAGAAAAATAAATAAAGCTTCATCTAAACAGAGAC-TCACAAC
*
2688202 TTTT-GAAAAGTAAATAA
1 TTTTAGAAAAATAAATAA
2688219 GGCTCTTCGA
Statistics
Matches: 122, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
43 14 0.11
44 92 0.75
45 16 0.13
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (45 bp):
TTTTAGAAAAATAAATAAAGCTTCATCTAAACAGAGACTCACAAC
Found at i:2688219 original size:44 final size:43
Alignment explanation
Indices: 2688075--2688220 Score: 168
Period size: 44 Copynumber: 3.3 Consensus size: 43
2688065 TGACTTCTAA
* * *
2688075 AAAAATAAATAAGGCTTCTCTAAATAGAAGCTCAACAACTTTAG
1 AAAAATAAATAAGG-TTCTCTAAATAGAGGCTTAACAACTTTTG
* * * * *
2688119 AAAAATAAATAAAGCTTCTCTAAACAGAGAC-TCACAGCTTTTAG
1 AAAAATAAAT-AAGGTTCTCTAAATAGAGGCTTAACAACTTTT-G
2688163 AAAAATAAATAAGGTTCATCTAAATAGAGGCTTAACAACTTTTG
1 AAAAATAAATAAGGTTC-TCTAAATAGAGGCTTAACAACTTTTG
*
2688207 AAAAGTAAATAAGG
1 AAAAATAAATAAGG
2688221 CTCTTCGATA
Statistics
Matches: 84, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
43 13 0.15
44 59 0.70
45 12 0.14
ACGTcount: A:0.48, C:0.14, G:0.13, T:0.25
Consensus pattern (43 bp):
AAAAATAAATAAGGTTCTCTAAATAGAGGCTTAACAACTTTTG
Found at i:2688567 original size:33 final size:33
Alignment explanation
Indices: 2688497--2688559 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
2688487 TCCTTACTTC
* ** *
2688497 ATGCACTAGACATTCTTAAATGCAATGCATAAT
1 ATGCACTAAACATTCAGAAATGCAATACATAAT
2688530 ATGCACTAAACATTCAGAAATGCAATACAT
1 ATGCACTAAACATTCAGAAATGCAATACAT
2688560 GCTATGCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (33 bp):
ATGCACTAAACATTCAGAAATGCAATACATAAT
Found at i:2689618 original size:15 final size:15
Alignment explanation
Indices: 2689600--2689683 Score: 50
Period size: 16 Copynumber: 5.3 Consensus size: 15
2689590 TTCTTTTCTC
2689600 TCATTTTATATTTTT
1 TCATTTTATATTTTT
2689615 TCATTATTCAT-TTTTT
1 TCATT-TT-ATATTTTT
*
2689631 T-ATTTTTTTATTTTTT
1 TCA-TTTTATA-TTTTT
2689647 TCATTTT-TCATTCTTTT
1 TCATTTTAT-A-T-TTTT
*
2689664 TC-TTTTCTCATTTTT
1 TCATTTTAT-ATTTTT
2689679 TCATT
1 TCATT
2689684 CATTATTGAT
Statistics
Matches: 58, Mismatches: 1, Indels: 19
0.74 0.01 0.24
Matches are distributed among these distances:
14 1 0.02
15 15 0.26
16 30 0.52
17 12 0.21
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (15 bp):
TCATTTTATATTTTT
Found at i:2689631 original size:16 final size:16
Alignment explanation
Indices: 2689610--2689683 Score: 82
Period size: 16 Copynumber: 4.6 Consensus size: 16
2689600 TCATTTTATA
*
2689610 TTTTTTCATTATTCAT
1 TTTTTTCATTTTTCAT
*
2689626 TTTTTT-ATTTTTTTAT
1 TTTTTTCA-TTTTTCAT
2689642 TTTTTTCATTTTTCAT
1 TTTTTTCATTTTTCAT
2689658 TCTTTTTC-TTTTCTCA-
1 T-TTTTTCATTTT-TCAT
2689674 TTTTTTCATT
1 TTTTTTCATT
2689684 CATTATTGAT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
15 7 0.14
16 33 0.66
17 10 0.20
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTCATTTTTCAT
Found at i:2689637 original size:8 final size:8
Alignment explanation
Indices: 2689624--2689654 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
2689614 TTCATTATTC
2689624 ATTTTTTT
1 ATTTTTTT
2689632 ATTTTTTT
1 ATTTTTTT
2689640 ATTTTTTT
1 ATTTTTTT
2689648 CATTTTT
1 -ATTTTT
2689655 CATTCTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.73
9 6 0.27
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (8 bp):
ATTTTTTT
Found at i:2689651 original size:32 final size:33
Alignment explanation
Indices: 2689603--2689683 Score: 103
Period size: 32 Copynumber: 2.5 Consensus size: 33
2689593 TTTTCTCTCA
2689603 TTTTATATTTTTTCATTATTCATT-TTTTTATTT
1 TTTTAT-TTTTTTCATTATTCATTCTTTTTATTT
* *
2689636 TTTTATTTTTTTCATTTTTCATTCTTTTTCTTT
1 TTTTATTTTTTTCATTATTCATTCTTTTTATTT
* *
2689669 TCTCA-TTTTTTCATT
1 TTTTATTTTTTTCATT
2689684 CATTATTGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
32 26 0.60
33 17 0.40
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (33 bp):
TTTTATTTTTTTCATTATTCATTCTTTTTATTT
Found at i:2689653 original size:7 final size:8
Alignment explanation
Indices: 2689587--2689683 Score: 69
Period size: 7 Copynumber: 12.1 Consensus size: 8
2689577 TCAATTTGAG
2689587 TTTTTC-T
1 TTTTTCAT
2689594 TTTCTCTCAT
1 TTT-T-TCAT
*
2689604 TTTAT-AT
1 TTTTTCAT
2689611 TTTTTCA-
1 TTTTTCAT
*
2689618 TTATTCAT
1 TTTTTCAT
*
2689626 TTTTTTAT
1 TTTTTCAT
*
2689634 TTTTTTATT
1 TTTTTCA-T
2689643 TTTTTCA-
1 TTTTTCAT
2689650 TTTTTCATT
1 TTTTTCA-T
2689659 CTTTTTC-T
1 -TTTTTCAT
*
2689667 TTTCTCAT
1 TTTTTCAT
2689675 TTTTTCAT
1 TTTTTCAT
2689683 T
1 T
2689684 CATTATTGAT
Statistics
Matches: 72, Mismatches: 8, Indels: 19
0.73 0.08 0.19
Matches are distributed among these distances:
7 27 0.38
8 26 0.36
9 9 0.12
10 10 0.14
ACGTcount: A:0.12, C:0.13, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTCAT
Found at i:2689680 original size:25 final size:26
Alignment explanation
Indices: 2689622--2689684 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
2689612 TTTTCATTAT
* * *
2689622 TCATTTTTTTATT-TTTTTATTTTTT
1 TCATTTTTTCATTCTTTTTACTTTTC
2689647 TCA-TTTTTCATTCTTTTT-CTTTTC
1 TCATTTTTTCATTCTTTTTACTTTTC
2689671 TCATTTTTTCATTC
1 TCATTTTTTCATTC
2689685 ATTATTGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 15 0.45
25 18 0.55
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (26 bp):
TCATTTTTTCATTCTTTTTACTTTTC
Found at i:2693833 original size:10 final size:10
Alignment explanation
Indices: 2693818--2693844 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
2693808 ATCTTCAAAA
2693818 TTTATTTTTT
1 TTTATTTTTT
2693828 TTTATTTTTT
1 TTTATTTTTT
2693838 TTTATTT
1 TTTATTT
2693845 CTAAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:2694200 original size:170 final size:170
Alignment explanation
Indices: 2693918--2694369 Score: 529
Period size: 170 Copynumber: 2.7 Consensus size: 170
2693908 AAATAATATG
* * * * * * * *
2693918 ACAATTATTTTC-TTAAAGTTTCATTTAAATTCTTTCACCATTTAAGATAAATTTAAAGAAACTT
1 ACAATTACTTTCATTAAAATTACATCTAAATTATTTCACCATTTAGGATAAATTTAGAGAAATTT
* ** * *
2693982 -TCACCTAGAGATTTATTTCGAAATTTACCATTTGAAACTTTTAAGAATCTCATCATTGGATAAT
66 CTCACCTAGAGATTT-CTTAAAAAATTATCATTTGAAACTTTTAAGAATCTCATCATTGGATAAT
*
2694046 TGTCAAATATTTTTTTAACCAAATTTTTATTT-AGAAAAGAAT
130 TGTCAAATA-TTTTTCAACCAAATTTTTATTTGA-AAAAGAAT
* *
2694088 ACAATTACTTTTATTGAAATTACATC-AAATTATTTCACCATTTAGGATAAATTTAGAGAAATTT
1 ACAATTACTTTCATTAAAATTACATCTAAATTATTTCACCATTTAGGATAAATTTAGAGAAATTT
* * * * *
2694152 CTCACTTAAAAATTTCTTAAAAAATTATCATTTGAAATTTTTAAGAATCTCATTATTGGATAATT
66 CTCACCTAGAGATTTCTTAAAAAATTATCATTTGAAACTTTTAAGAATCTCATCATTGGATAATT
* *
2694217 GTCACATATTTTTCAACCAAATTTTTATTTGAAAAATAAT
131 GTCAAATATTTTTCAACCAAATTTTTATTTGAAAAAGAAT
* ** * *
2694257 ACAATTACTTTCGTTAAAATTTTATCTAAATTA-TTCTACCATTTGGGACAAATTT-GAAGAAAT
1 ACAATTACTTTCATTAAAATTACATCTAAATTATTTC-ACCATTTAGGATAAATTTAG-AGAAAT
* * *
2694320 TTCTCACCTAGAGATTTCTTAAAAAATTTGTCATTAGAAAGTTTTAAGAA
64 TTCTCACCTAGAGATTTCTTAAAAAA-TTATCATTTGAAACTTTTAAGAA
2694370 CTTTATCATT
Statistics
Matches: 239, Mismatches: 36, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
169 53 0.22
170 146 0.61
171 40 0.17
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (170 bp):
ACAATTACTTTCATTAAAATTACATCTAAATTATTTCACCATTTAGGATAAATTTAGAGAAATTT
CTCACCTAGAGATTTCTTAAAAAATTATCATTTGAAACTTTTAAGAATCTCATCATTGGATAATT
GTCAAATATTTTTCAACCAAATTTTTATTTGAAAAAGAAT
Found at i:2695718 original size:25 final size:27
Alignment explanation
Indices: 2695668--2695718 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 27
2695658 AATTGTTAAA
* *
2695668 ATATTAAAAATTATTTATTATTAAAAT
1 ATATTAAAAATTATTTAATATAAAAAT
2695695 ATATT-AAAATTA-TTAATATAAAAA
1 ATATTAAAAATTATTTAATATAAAAA
2695719 ATAACTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 10 0.45
26 7 0.32
27 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
ATATTAAAAATTATTTAATATAAAAAT
Found at i:2695721 original size:26 final size:27
Alignment explanation
Indices: 2695668--2695718 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
2695658 AATTGTTAAA
* *
2695668 ATATTAAAAATTATTTATTATTAAAAT
1 ATATTAAAAATTATTAATTATAAAAAT
2695695 ATATT-AAAATTATTAA-TATAAAAA
1 ATATTAAAAATTATTAATTATAAAAA
2695719 ATAACTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 10 0.45
27 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
ATATTAAAAATTATTAATTATAAAAAT
Found at i:2695834 original size:35 final size:35
Alignment explanation
Indices: 2695794--2695862 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
2695784 TAAAACTATT
* * *
2695794 TATTATTCTTTATATTATTTATTAATATACTATAA
1 TATTATTATTGATAATATTTATTAATATACTATAA
*
2695829 TATTATTATTGATAATATTTATTAATATATTATA
1 TATTATTATTGATAATATTTATTAATATACTATA
2695863 TTAATAGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (35 bp):
TATTATTATTGATAATATTTATTAATATACTATAA
Found at i:2695913 original size:22 final size:21
Alignment explanation
Indices: 2695841--2695927 Score: 70
Period size: 21 Copynumber: 4.0 Consensus size: 21
2695831 TTATTATTGA
* *
2695841 TAATATTTATTAATATATTATAT
1 TAATATTTATTATTA-AAT-TAT
* *
2695864 TAATAGTATATTATT-TATTA-
1 TAATA-TTTATTATTAAATTAT
*
2695884 AAATATTTATTAATTAAATTAT
1 TAATATTTATT-ATTAAATTAT
*
2695906 TAATATTTATTATTATATTAT
1 TAATATTTATTATTAAATTAT
2695927 T
1 T
2695928 TATTAATATA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
19 5 0.10
20 7 0.14
21 16 0.31
22 11 0.22
23 5 0.10
24 7 0.14
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (21 bp):
TAATATTTATTATTAAATTAT
Found at i:2695939 original size:80 final size:78
Alignment explanation
Indices: 2695809--2695957 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 78
2695799 TTCTTTATAT
* *
2695809 TATTTATTAATATACTATAATATTATTATTGATAATATTTATTAATATATTATATTAATAGTATA
1 TATTTATTAATAAACTATAATATTATTATTGATAATATTTATTAATATATTATATTAATAATATA
2695874 TTATTTATTAAAA
66 TTATTTATTAAAA
* * *
2695887 TATTTATTAATTAAATTATTAATATTTATTATT-ATATTATTTATTAATATATTTTATTAATAAT
1 TATTTATTAA-TAAACTA-TAATA-TTATTATTGATAATATTTATTAATATATTATATTAATAAT
*
2695951 ATTTTAT
63 ATATTAT
2695958 AATATTGTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
78 10 0.16
79 5 0.08
80 39 0.63
81 8 0.13
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (78 bp):
TATTTATTAATAAACTATAATATTATTATTGATAATATTTATTAATATATTATATTAATAATATA
TTATTTATTAAAA
Found at i:2695952 original size:16 final size:16
Alignment explanation
Indices: 2695851--2695958 Score: 80
Period size: 16 Copynumber: 6.8 Consensus size: 16
2695841 TAATATTTAT
2695851 TAATATATTATATTAA
1 TAATATATTATATTAA
* *
2695867 TAGTATATTAT-TTAT
1 TAATATATTATATTAA
*
2695882 TAAAATATT-TATTAA
1 TAATATATTATATTAA
*
2695897 TTAA-ATTATTAATATTTAT
1 -TAATA-TATT-ATA-TTAA
* *
2695916 TATTATATTAT-TTAT
1 TAATATATTATATTAA
*
2695931 TAATATATTTTATTAA
1 TAATATATTATATTAA
*
2695947 TAATATTTTATA
1 TAATATATTATA
2695959 ATATTGTTCA
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
14 1 0.01
15 27 0.38
16 30 0.42
17 2 0.03
18 8 0.11
19 4 0.06
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (16 bp):
TAATATATTATATTAA
Found at i:2695961 original size:10 final size:10
Alignment explanation
Indices: 2695946--2695984 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
2695936 TATTTTATTA
2695946 ATAATATTTT
1 ATAATATTTT
2695956 ATAATATTGTT
1 ATAATATT-TT
*
2695967 CATAATATATT
1 -ATAATATTTT
2695978 ATAATAT
1 ATAATAT
2695985 AATATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 15 0.58
11 4 0.15
12 7 0.27
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (10 bp):
ATAATATTTT
Found at i:2696004 original size:22 final size:22
Alignment explanation
Indices: 2695805--2696018 Score: 95
Period size: 22 Copynumber: 9.5 Consensus size: 22
2695795 ATTATTCTTT
* *
2695805 ATATTATTTATTAATATACTATA
1 ATATTATTTATTTAT-TAATATA
*
2695828 ATATTA-TTATTGA-TAATAT-
1 ATATTATTTATTTATTAATATA
* *
2695847 TTATTAATATATTATATTAATAGT-
1 ATATT-ATTTATT-TATTAATA-TA
*
2695871 ATATTATTTA-TTA-AAATAT-
1 ATATTATTTATTTATTAATATA
* * *
2695890 TTATTAATTAAATTATTAATATTTA
1 ATATT-ATTTATTTATTAATA--TA
*
2695915 TTATTATATTATTTATTAATAT-
1 ATATTAT-TTATTTATTAATATA
* * * *
2695937 ATTTTATTAATAATATT-TTATA
1 ATATTATTTAT-TTATTAATATA
* *
2695959 ATATTGTTCATAATATATTATAATATA
1 ATATTATT--T-ATTTA-T-TAATATA
2695986 ATATTATTTATTTATTAATATA
1 ATATTATTTATTTATTAATATA
2696008 ATATTATTTAT
1 ATATTATTTAT
2696019 AAGTAAAATG
Statistics
Matches: 147, Mismatches: 24, Indels: 41
0.69 0.11 0.19
Matches are distributed among these distances:
19 9 0.06
20 14 0.10
21 15 0.10
22 45 0.31
23 17 0.12
24 15 0.10
25 20 0.14
26 1 0.01
27 11 0.07
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (22 bp):
ATATTATTTATTTATTAATATA
Found at i:2696612 original size:25 final size:24
Alignment explanation
Indices: 2696581--2696639 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
2696571 TATTAATATA
*
2696581 ATTATTAAA-TTATTAAAAATTATTT
1 ATTATTAAACATATT-AAAATTA-TT
2696606 ATTATTAAAACATATTAAAATTATT
1 ATTATT-AAACATATTAAAATTATT
*
2696631 ACTATTAAA
1 ATTATTAAA
2696640 AAATAAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 3 0.10
25 13 0.43
26 10 0.33
27 4 0.13
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTATTAAACATATTAAAATTATT
Found at i:2696752 original size:23 final size:23
Alignment explanation
Indices: 2696726--2696957 Score: 134
Period size: 23 Copynumber: 10.0 Consensus size: 23
2696716 ATTATTCTTT
2696726 ATATTATTTATTAATATATTATA
1 ATATTATTTATTAATATATTATA
*
2696749 ATATTACTTATTAATAATATTTATTA
1 ATATTATTTATTAAT-ATA-TTA-TA
*
2696775 ATA-TATTATATT-A-ATA--GT-
1 ATATTATT-TATTAATATATTATA
2696793 ATATTATTTATTAATA-A-TATA
1 ATATTATTTATTAATATATTATA
* *
2696814 TTATTTATTCA-T-ATATCATTATA
1 ATA-TTATTTATTAATAT-ATTATA
* *
2696837 ATATTTATTAATTAA-AT-TAATA
1 ATA-TTATTTATTAATATATTATA
*
2696859 ATATTATTTATT-ATATTATTCTA
1 ATATTATTTATTAATA-TATTATA
2696882 ATATT-TTATAATATAATAT-TTATTAA
1 ATATTATT-T-AT-TAATATATTA-T-A
*
2696908 TATAATATTATTTATGAATATATTATA
1 -AT---ATTATTTATTAATATATTATA
2696935 ATATTATTTATTAATATATTATA
1 ATATTATTTATTAATATATTATA
2696958 TTAATAATAT
Statistics
Matches: 164, Mismatches: 15, Indels: 60
0.69 0.06 0.25
Matches are distributed among these distances:
18 7 0.04
19 7 0.04
20 6 0.04
21 12 0.07
22 17 0.10
23 59 0.36
24 10 0.06
25 11 0.07
26 15 0.09
27 3 0.02
28 6 0.04
29 5 0.03
30 4 0.02
31 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (23 bp):
ATATTATTTATTAATATATTATA
Found at i:2696804 original size:18 final size:17
Alignment explanation
Indices: 2696725--2696994 Score: 156
Period size: 18 Copynumber: 15.7 Consensus size: 17
2696715 TATTATTCTT
2696725 TATATTATTTATTAATA
1 TATATTATTTATTAATA
* *
2696742 TATTATAATATTACTTATTA
1 TA-TATTAT-TTA-TTAATA
*
2696762 -ATAATATTTATT-A-A
1 TATATTATTTATTAATA
2696776 TATATTA--TATTAATA
1 TATATTATTTATTAATA
2696791 GTATATTATTTATTAATAA
1 -TATATTATTTATTAAT-A
*
2696810 TATATTATTTATT--CA
1 TATATTATTTATTAATA
*
2696825 TATATCA-TTA-TAATA
1 TATATTATTTATTAATA
* *
2696840 TTTATTAATTAAATTAATA
1 TATATT-ATT-TATTAATA
2696859 -ATATTATTTATTATATTA
1 TATATTATTTATTA-A-TA
* *
2696877 TTCTAATATTT-TATAATA
1 -TATATTATTTAT-TAATA
2696895 TA-A-TATTTATTAATA
1 TATATTATTTATTAATA
*
2696910 TAATATTATTTATGAATA
1 T-ATATTATTTATTAATA
* *
2696928 TATTATAATATTATTTAT-
1 TA-TATTAT-TTATTAATA
2696946 TA-ATATATTATATTAATAA
1 TATAT-TATT-TATTAAT-A
*
2696965 TATATTATTTATTCATA
1 TATATTATTTATTAATA
2696982 TAATATTATTTAT
1 T-ATATTATTTAT
2696995 AAGTAAAATT
Statistics
Matches: 196, Mismatches: 24, Indels: 65
0.69 0.08 0.23
Matches are distributed among these distances:
13 5 0.03
14 5 0.03
15 29 0.15
16 20 0.10
17 23 0.12
18 74 0.38
19 24 0.12
20 16 0.08
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.55
Consensus pattern (17 bp):
TATATTATTTATTAATA
Found at i:2696808 original size:41 final size:42
Alignment explanation
Indices: 2696757--2696956 Score: 104
Period size: 45 Copynumber: 4.8 Consensus size: 42
2696747 TAATATTACT
* * * *
2696757 TATTAATAATAT-TTATTAATATATTATATTAATAGTATATTA
1 TATTAATAATATATTATTTAT-TAATATATTATTAATATATTA
2696799 TTTATTAATAATATATTATTTATTCATATATCATTA-TAATAT-TTA
1 --TATTAATAATATATTATTTATT-A-ATAT-ATTATTAATATATTA
*
2696844 TTAATTAAATTAATAATATTATTTATT-ATATTATT-CTAATAT-TT-
1 -T-ATT-AA-TAAT-ATATTATTTATTAATA-TATTATTAATATATTA
* * *
2696888 TA-TAAT-ATA-A-TATTTATTAATATAATATTATTTATGAATA
1 TATTAATAATATATTATTTATTAATATATTATTA-ATAT-ATTA
2696928 TATT-AT-A-ATATTATTTATTAATATATTAT
1 TATTAATAATATATTATTTATTAATATATTAT
2696957 ATTAATAATA
Statistics
Matches: 129, Mismatches: 8, Indels: 41
0.72 0.04 0.23
Matches are distributed among these distances:
35 11 0.09
36 6 0.05
37 4 0.03
38 2 0.02
39 3 0.02
40 8 0.06
41 19 0.15
42 1 0.01
43 1 0.01
44 15 0.12
45 28 0.22
46 11 0.09
47 8 0.06
48 12 0.09
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (42 bp):
TATTAATAATATATTATTTATTAATATATTATTAATATATTA
Found at i:2696865 original size:30 final size:31
Alignment explanation
Indices: 2696831--2696918 Score: 85
Period size: 30 Copynumber: 2.9 Consensus size: 31
2696821 TTCATATATC
2696831 ATTATAATATTTATTAAT-TAA-ATTAATAAT
1 ATTATAATATTTATTAATATAATATT-ATAAT
* * * *
2696861 ATTAT-TTATTATATTATTCTAATATT-TTAT
1 ATTATAATATT-TATTAATATAATATTATAAT
*
2696891 AATATAATATTTATTAATATAATATTAT
1 ATTATAATATTTATTAATATAATATTAT
2696919 TTATGAATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
29 4 0.09
30 31 0.67
31 8 0.17
32 3 0.07
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (31 bp):
ATTATAATATTTATTAATATAATATTATAAT
Found at i:2696935 original size:43 final size:39
Alignment explanation
Indices: 2696757--2696972 Score: 148
Period size: 41 Copynumber: 5.4 Consensus size: 39
2696747 TAATATTACT
2696757 TATTAATAATAT-TTATTAATA-TATTATATTAATAGTATATTA
1 TATTAATAATATATTA-TAATATTATT-TATTAATA-TA-A-TA
* * * *
2696799 TTTATTAATAATATATTAT-TTATTCATATATCATTATAATA
1 --TATTAATAATATATTATAATATT-ATTTATTAATATAATA
* *
2696840 T-TTATTAATTAAATTAATAATATTATTTATT-ATAT--TA
1 TATTAATAA-TATATT-ATAATATTATTTATTAATATAATA
2696877 T-TCTAAT-AT-T-TTATAATATAATATTTATTAATATAATA
1 TAT-TAATAATATATTATAATAT--TATTTATTAATATAATA
* *
2696915 TTATTTATGAATATATTATAATATTATTTATTAATATATTA
1 -TATTAAT-AATATATTATAATATTATTTATTAATATAATA
2696956 TATTAATAATATATTAT
1 TATTAATAATATATTAT
2696973 TTATTCATAT
Statistics
Matches: 139, Mismatches: 15, Indels: 41
0.71 0.08 0.21
Matches are distributed among these distances:
33 7 0.05
34 2 0.01
35 8 0.06
36 5 0.04
37 5 0.04
38 11 0.08
39 23 0.17
40 14 0.10
41 24 0.17
42 2 0.01
43 13 0.09
44 20 0.14
45 5 0.04
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (39 bp):
TATTAATAATATATTATAATATTATTTATTAATATAATA
Found at i:2704788 original size:101 final size:101
Alignment explanation
Indices: 2704604--2704799 Score: 353
Period size: 101 Copynumber: 2.0 Consensus size: 101
2704594 TTTATGTTAT
*
2704604 CTATGGCCATAGGGCTGTATTCGATAGCCGGTGAGGCCCAACTTCACCATCGCCGTACGTTTTGT
1 CTATGGCCATAGGGCTGTATTCGATAGCCAGTGAGGCCCAACTTCACCATCGCCGTACGTTTTGT
2704669 TGACAGCTAATTTCTTTTTTTTTTTGTTACGTTTAG
66 TGACAGCTAATTTCTTTTTTTTTTTGTTACGTTTAG
*
2704705 CTATGGCCATAGGGCTGTTTTCGATAGCCAGTGAGGCCCAACTTCACCATCGCCGTACGTTTTGT
1 CTATGGCCATAGGGCTGTATTCGATAGCCAGTGAGGCCCAACTTCACCATCGCCGTACGTTTTGT
2704770 TGACAGCT--TTT-TTTTTTTTTTTGTTACGTT
66 TGACAGCTAATTTCTTTTTTTTTTTGTTACGTT
2704800 ACGACGGTAA
Statistics
Matches: 93, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
98 19 0.20
99 3 0.03
101 71 0.76
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (101 bp):
CTATGGCCATAGGGCTGTATTCGATAGCCAGTGAGGCCCAACTTCACCATCGCCGTACGTTTTGT
TGACAGCTAATTTCTTTTTTTTTTTGTTACGTTTAG
Found at i:2707581 original size:24 final size:24
Alignment explanation
Indices: 2707525--2707594 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
2707515 ATTAAATATA
*
2707525 AAAATTGTATT-TTATTA-AATTT
1 AAAATTATATTATTATTATAATTT
*
2707547 -ATA-TATAATTATTATTATAATTT
1 AAAATTAT-ATTATTATTATAATTT
* *
2707570 AAAATTATATTATTTTTATATTTT
1 AAAATTATATTATTATTATAATTT
2707594 A
1 A
2707595 TTTTTATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
20 2 0.05
21 5 0.13
22 6 0.16
23 5 0.13
24 17 0.45
25 3 0.08
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (24 bp):
AAAATTATATTATTATTATAATTT
Found at i:2707609 original size:13 final size:13
Alignment explanation
Indices: 2707580--2707636 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 13
2707570 AAAATTATAT
**
2707580 TATTTTTATATTT
1 TATTTTTATATCA
2707593 TATTTTTATATCA
1 TATTTTTATATCA
2707606 TA-TTTTATATCA
1 TATTTTTATATCA
* * **
2707618 AATTATCGTATCA
1 TATTTTTATATCA
2707631 TATTTT
1 TATTTT
2707637 AAATTATTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
12 11 0.31
13 24 0.69
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (13 bp):
TATTTTTATATCA
Found at i:2709236 original size:20 final size:21
Alignment explanation
Indices: 2709205--2709258 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
2709195 TAATCTTATT
2709205 TTTAAG-TTTATTTATATTTA
1 TTTAAGATTTATTTATATTTA
* * *
2709225 TTT-GGATTTATTTATGTTTG
1 TTTAAGATTTATTTATATTTA
2709245 TTTAAGATTTATTT
1 TTTAAGATTTATTT
2709259 GTTTAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.04
20 18 0.64
21 9 0.32
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.65
Consensus pattern (21 bp):
TTTAAGATTTATTTATATTTA
Found at i:2709270 original size:14 final size:14
Alignment explanation
Indices: 2709241--2709287 Score: 67
Period size: 15 Copynumber: 3.2 Consensus size: 14
2709231 TTTATTTATG
2709241 TTTGTTTAAGATTTA
1 TTTGTTTAA-ATTTA
2709256 TTTGTTTAAATTTA
1 TTTGTTTAAATTTA
*
2709270 TTTGATTATAATTTA
1 TTTGTTTA-AATTTA
2709285 TTT
1 TTT
2709288 ATTGTTCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.64
Consensus pattern (14 bp):
TTTGTTTAAATTTA
Found at i:2710899 original size:20 final size:21
Alignment explanation
Indices: 2710871--2710912 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
2710861 AAATTTAAAC
*
2710871 AGATAATAAATTATTT-ATATA
1 AGATAAT-AATAATTTAATATA
2710892 AGAT-ATAATAATTTAATATA
1 AGATAATAATAATTTAATATA
2710912 A
1 A
2710913 TTTCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 7 0.37
20 8 0.42
21 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AGATAATAATAATTTAATATA
Found at i:2711447 original size:31 final size:32
Alignment explanation
Indices: 2711388--2711448 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
2711378 TTAAAATTTA
*
2711388 CAAACATATCAATATTAATACTCAATCCAATT
1 CAAACATATCAAAATTAATACTCAATCCAATT
2711420 CAAACATA-CATAAATTAATA-TCAATCCAA
1 CAAACATATCA-AAATTAATACTCAATCCAA
2711449 ACTAACAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (32 bp):
CAAACATATCAAAATTAATACTCAATCCAATT
Found at i:2727650 original size:2 final size:2
Alignment explanation
Indices: 2727643--2727669 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2727633 TAGTGAAATT
2727643 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2727670 TTTTATCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2734327 original size:22 final size:22
Alignment explanation
Indices: 2734285--2734329 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
2734275 TTTTTAAGCT
** *
2734285 TTTATTAAAATTTTTATTTTAA
1 TTTATTAAAATTTAAACTTTAA
2734307 TTTATTAAAATTTAAACTTTAA
1 TTTATTAAAATTTAAACTTTAA
2734329 T
1 T
2734330 CATTAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTATTAAAATTTAAACTTTAA
Found at i:2750465 original size:119 final size:120
Alignment explanation
Indices: 2750250--2750480 Score: 392
Period size: 119 Copynumber: 1.9 Consensus size: 120
2750240 ACTATTCTTA
*
2750250 TAGATAATTAACTGTAAAAGCCTGTGAAGACTACCTGAATCAGAGAAAATAAAATGTTCAACTTT
1 TAGATAATTAACTGTAAAAGCCTATGAAGACTACCTGAATCAGAGAAAATAAAATGTTCAACTTT
* * *
2750315 GTCGTACTTAAAAGTAACCATTAAGGTTCTA-TAAAAAAAAGGTTAACTTTTACG
66 GACATACTTAAAAGTAACCATTAAGGCTCTATTAAAAAAAAGGTTAACTTTTACG
* * *
2750369 TAGATAATTAAGTGTAAAAGCCTATGAAGACTACCTGAATCGGAGAAAATAAAATGTTCAATTTT
1 TAGATAATTAACTGTAAAAGCCTATGAAGACTACCTGAATCAGAGAAAATAAAATGTTCAACTTT
2750434 GACATACTTAAAAGTAACCATTAAGGCTCTATTAAAAAAAAGGTTAA
66 GACATACTTAAAAGTAACCATTAAGGCTCTATTAAAAAAAAGGTTAA
2750481 AGGTTACTTT
Statistics
Matches: 104, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
119 89 0.86
120 15 0.14
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.29
Consensus pattern (120 bp):
TAGATAATTAACTGTAAAAGCCTATGAAGACTACCTGAATCAGAGAAAATAAAATGTTCAACTTT
GACATACTTAAAAGTAACCATTAAGGCTCTATTAAAAAAAAGGTTAACTTTTACG
Found at i:2763239 original size:14 final size:14
Alignment explanation
Indices: 2763169--2763239 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 14
2763159 ATTTTTTTAA
2763169 AAAAAAAAAATTTT
1 AAAAAAAAAATTTT
* * *
2763183 AATAGATAAA-TTT
1 AAAAAAAAAATTTT
*
2763196 AACTTAAAAAAAATTAT
1 AA---AAAAAAAATTTT
2763213 AAAAAAAAAATTTT
1 AAAAAAAAAATTTT
* *
2763227 AATAAACAAATTT
1 AAAAAAAAAATTT
2763240 ATATGTTTAT
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
13 5 0.12
14 29 0.67
16 5 0.12
17 4 0.09
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (14 bp):
AAAAAAAAAATTTT
Found at i:2765974 original size:4 final size:4
Alignment explanation
Indices: 2765965--2766003 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
2765955 GTGGTGGAAT
*
2765965 ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
2766004 TATGTGTGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (4 bp):
ATAC
Found at i:2766661 original size:15 final size:13
Alignment explanation
Indices: 2766645--2766670 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2766635 ACATTTTCAA
2766645 AAAATTTTATATC
1 AAAATTTTATATC
2766658 AAAATTTTATATC
1 AAAATTTTATATC
2766671 TGATAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAATTTTATATC
Found at i:2766894 original size:32 final size:32
Alignment explanation
Indices: 2766858--2766927 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
2766848 AACATTTTGA
2766858 AAAAATATT-AAATTTATAAATTT-AAAAGTTTT
1 AAAAATATTCAAATTTA-AAATTTCAAAAG-TTT
* *
2766890 AAAAAT-TTCAGATTTACAATTTCAAAAGTTT
1 AAAAATATTCAAATTTAAAATTTCAAAAGTTT
2766921 AAAAATA
1 AAAAATA
2766928 AAAGGATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
31 16 0.48
32 17 0.52
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (32 bp):
AAAAATATTCAAATTTAAAATTTCAAAAGTTT
Found at i:2766988 original size:16 final size:16
Alignment explanation
Indices: 2766955--2766992 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
2766945 AAAGGAAATT
2766955 AAATA-ATTTTATTTAA
1 AAATATATTTTA-TTAA
2766971 AAATATATTTT-TTAA
1 AAATATATTTTATTAA
2766986 AAATATA
1 AAATATA
2766993 AAAAATAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.52
16 5 0.24
17 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATATATTTTATTAA
Found at i:2780954 original size:78 final size:78
Alignment explanation
Indices: 2780838--2780992 Score: 195
Period size: 78 Copynumber: 2.0 Consensus size: 78
2780828 TATTGCCTGA
* * * * *
2780838 TCCCGTAGTTAATATGAAAATTTTGTCAGGCACATCAGAGTTTTCATTTGAACAATTTGACCTGC
1 TCCCGTAGTTAATATGAAAATTTTGACAGGCACATCAGAGTTTCCACTTGAACAATCTAACCTGC
*
2780903 TGGTATCACATGC
66 CGGTATCACATGC
* * * *
2780916 TCCCGTCGTTAATATGGAAAA-TTTGACAGGTACGTCAGAGTTTCCGCTTGAACAATCTAACCTG
1 TCCCGTAGTTAATAT-GAAAATTTTGACAGGCACATCAGAGTTTCCACTTGAACAATCTAACCTG
*
2780980 CCGGTATCGCATG
65 CCGGTATCACATG
2780993 ATTTAGAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 60 0.92
79 5 0.08
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (78 bp):
TCCCGTAGTTAATATGAAAATTTTGACAGGCACATCAGAGTTTCCACTTGAACAATCTAACCTGC
CGGTATCACATGC
Found at i:2785668 original size:30 final size:32
Alignment explanation
Indices: 2785632--2785701 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 32
2785622 CGAAATTAAT
* * *
2785632 AAAATATTATTTTTTAAATATA-A-ATATTTA
1 AAAATATTATTATATAAATATATATATAATTA
*
2785662 AAAATATCATTATATAAATATATATATAATTA
1 AAAATATTATTATATAAATATATATATAATTA
2785694 AAAA-ATTA
1 AAAATATTA
2785702 AAAAATTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 19 0.58
31 4 0.12
32 10 0.30
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (32 bp):
AAAATATTATTATATAAATATATATATAATTA
Found at i:2785817 original size:11 final size:11
Alignment explanation
Indices: 2785795--2785823 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
2785785 TCTTCATGCT
2785795 ACCCGA-CCCG
1 ACCCGACCCCG
2785805 ACCCGACCCCG
1 ACCCGACCCCG
2785816 ACCCGACC
1 ACCCGACC
2785824 TTCGATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.21, C:0.62, G:0.17, T:0.00
Consensus pattern (11 bp):
ACCCGACCCCG
Found at i:2789140 original size:21 final size:22
Alignment explanation
Indices: 2789115--2789156 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
2789105 TTAATCTCTT
2789115 AATTTTAATAA-TATAAATATA
1 AATTTTAATAATTATAAATATA
*
2789136 AATTTTAATAATTTTAAATAT
1 AATTTTAATAATTATAAATAT
2789157 TAAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AATTTTAATAATTATAAATATA
Found at i:2789601 original size:11 final size:11
Alignment explanation
Indices: 2789585--2789614 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
2789575 ATAAAAATAA
*
2789585 AATTTTCACTT
1 AATTTTAACTT
2789596 AATTTTAACTT
1 AATTTTAACTT
2789607 AATTTTAA
1 AATTTTAA
2789615 GTTTTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (11 bp):
AATTTTAACTT
Found at i:2790754 original size:17 final size:17
Alignment explanation
Indices: 2790729--2790763 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2790719 TACATTTTTA
*
2790729 TTTTGTTTATTTAATTG
1 TTTTATTTATTTAATTG
*
2790746 TTTTATTTATTTATTTG
1 TTTTATTTATTTAATTG
2790763 T
1 T
2790764 CTTTTATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTTATTTATTTAATTG
Found at i:2791263 original size:12 final size:12
Alignment explanation
Indices: 2791246--2791275 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
2791236 TGTTCAACAT
2791246 TAAATTATTTGG
1 TAAATTATTTGG
2791258 TAAATTATTTGG
1 TAAATTATTTGG
2791270 TAAATT
1 TAAATT
2791276 TTTAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (12 bp):
TAAATTATTTGG
Found at i:2791308 original size:21 final size:20
Alignment explanation
Indices: 2791274--2791317 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 20
2791264 ATTTGGTAAA
2791274 TTTTTAATTATTAAGTATATAT
1 TTTTTAATTATTAA--ATATAT
*
2791296 TTTTTCATT-TTAAATATAT
1 TTTTTAATTATTAAATATAT
2791315 TTT
1 TTT
2791318 ATAAAATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTTAATTATTAAATATAT
Found at i:2791495 original size:31 final size:31
Alignment explanation
Indices: 2791423--2791528 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 31
2791413 TAATAAATCT
* * * * *
2791423 ATTTTTAAAAACGATCTGAAAATTTTTACATA
1 ATTTTT-AAAATGATATAAAAAATTTTACTTA
** *
2791455 ATATTTTAAAATGATAT-AAAGTTTTTATTTA
1 AT-TTTTAAAATGATATAAAAAATTTTACTTA
**
2791486 ATTTCTTAAACCGATATAAAAAATTTTACTTA
1 ATTT-TTAAAATGATATAAAAAATTTTACTTA
2791518 ATTTTTAAAAT
1 ATTTTTAAAAT
2791529 TATTTGTAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
30 2 0.03
31 28 0.47
32 25 0.42
33 4 0.07
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (31 bp):
ATTTTTAAAATGATATAAAAAATTTTACTTA
Found at i:2791604 original size:17 final size:17
Alignment explanation
Indices: 2791577--2791617 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
2791567 CTTAATTTTA
*
2791577 ATTTT-TTTAAATCTATT
1 ATTTTATTTAAA-ATATT
2791594 -TTTTATTTAAAATATT
1 ATTTTATTTAAAATATT
2791610 ATTTTATT
1 ATTTTATT
2791618 GATAAATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTATTTAAAATATT
Found at i:2791976 original size:15 final size:16
Alignment explanation
Indices: 2791937--2791978 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
2791927 TATTAAAAAC
2791937 AAAAAATATAACTAAT
1 AAAAAATATAACTAAT
** *
2791953 AAATCATATTAC-AAT
1 AAAAAATATAACTAAT
2791968 AAAAAATATAA
1 AAAAAATATAA
2791979 AAATATAATT
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAAATATAACTAAT
Found at i:2792136 original size:40 final size:41
Alignment explanation
Indices: 2792056--2792136 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
2792046 TTTGGTCCCT
* * * *
2792056 AAATTTAGAAAGAATTTTATTTTGGTTCTTTATTTGCCACA
1 AAATTTAGAAAGAATTTTATTTTGGTTCCTCATATACCACA
2792097 AAATTT-GAAAGAATTTTATTTTGGTTCCTCATATACCACA
1 AAATTTAGAAAGAATTTTATTTTGGTTCCTCATATACCACA
2792137 TAGAATGCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 30 0.83
41 6 0.17
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.43
Consensus pattern (41 bp):
AAATTTAGAAAGAATTTTATTTTGGTTCCTCATATACCACA
Found at i:2802884 original size:186 final size:186
Alignment explanation
Indices: 2802570--2802945 Score: 743
Period size: 186 Copynumber: 2.0 Consensus size: 186
2802560 ACTGTAAAGA
2802570 TTAGTGGTAGCATAGCTCTAAAATCTCATATGCTTTTTAGAAGGGGTGAGCAGTCGGCGTATTGT
1 TTAGTGGTAGCATAGCTCTAAAATCTCATATGCTTTTTAGAAGGGGTGAGCAGTCGGCGTATTGT
2802635 TGGGCTGTTTCACTGGTTAAGGTATGTGTTAGGCCACCAGTCAAGGGCTGCCCCTCTGGTCCCGA
66 TGGGCTGTTTCACTGGTTAAGGTATGTGTTAGGCCACCAGTCAAGGGCTGCCCCTCTGGTCCCGA
*
2802700 CGATGGTGGGAAGTCTCGATGTACTATTATCGATATTAATAAAATATTTATTTTGT
131 CGATGGTGGAAAGTCTCGATGTACTATTATCGATATTAATAAAATATTTATTTTGT
2802756 TTAGTGGTAGCATAGCTCTAAAATCTCATATGCTTTTTAGAAGGGGTGAGCAGTCGGCGTATTGT
1 TTAGTGGTAGCATAGCTCTAAAATCTCATATGCTTTTTAGAAGGGGTGAGCAGTCGGCGTATTGT
2802821 TGGGCTGTTTCACTGGTTAAGGTATGTGTTAGGCCACCAGTCAAGGGCTGCCCCTCTGGTCCCGA
66 TGGGCTGTTTCACTGGTTAAGGTATGTGTTAGGCCACCAGTCAAGGGCTGCCCCTCTGGTCCCGA
2802886 CGATGGTGGAAAGTCTCGATGTACTATTATCGATATTAATAAAATATTTATTTTGT
131 CGATGGTGGAAAGTCTCGATGTACTATTATCGATATTAATAAAATATTTATTTTGT
2802942 TTAG
1 TTAG
2802946 AGGTCCTGTG
Statistics
Matches: 189, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
186 189 1.00
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (186 bp):
TTAGTGGTAGCATAGCTCTAAAATCTCATATGCTTTTTAGAAGGGGTGAGCAGTCGGCGTATTGT
TGGGCTGTTTCACTGGTTAAGGTATGTGTTAGGCCACCAGTCAAGGGCTGCCCCTCTGGTCCCGA
CGATGGTGGAAAGTCTCGATGTACTATTATCGATATTAATAAAATATTTATTTTGT
Found at i:2803012 original size:10 final size:10
Alignment explanation
Indices: 2802993--2803024 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
2802983 TCAATATGAA
*
2802993 TGTGTTTACT
1 TGTGTATACT
2803003 TGTGTATACT
1 TGTGTATACT
2803013 TGTGTATACT
1 TGTGTATACT
2803023 TG
1 TG
2803025 AGATTAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.16, C:0.09, G:0.22, T:0.53
Consensus pattern (10 bp):
TGTGTATACT
Found at i:2807214 original size:18 final size:19
Alignment explanation
Indices: 2807175--2807215 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
2807165 ATCTTCTTCT
2807175 TTCAAGCTCTCCAAATTGTC
1 TTCAAGCTCT-CAAATTGTC
*
2807195 TTCAAGCTCT-AAATTTTC
1 TTCAAGCTCTCAAATTGTC
2807213 TTC
1 TTC
2807216 CACAAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
20 10 0.50
ACGTcount: A:0.24, C:0.27, G:0.07, T:0.41
Consensus pattern (19 bp):
TTCAAGCTCTCAAATTGTC
Found at i:2820054 original size:15 final size:15
Alignment explanation
Indices: 2820022--2820062 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
2820012 AAAAATCTGT
2820022 AAAAAAAAAAA--AA
1 AAAAAAAAAAACCAA
2820035 AAAAAAAAAAACCAA
1 AAAAAAAAAAACCAA
* *
2820050 CAAAAGAAAAACC
1 AAAAAAAAAAACC
2820063 CCTTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 11 0.46
15 13 0.54
ACGTcount: A:0.85, C:0.12, G:0.02, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAACCAA
Found at i:2821790 original size:7 final size:7
Alignment explanation
Indices: 2821778--2821802 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2821768 TCGCTCATTT
2821778 TTCCCTA
1 TTCCCTA
2821785 TTCCCTA
1 TTCCCTA
2821792 TTCCCTA
1 TTCCCTA
2821799 TTCC
1 TTCC
2821803 ATTCTCTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (7 bp):
TTCCCTA
Found at i:2827300 original size:14 final size:14
Alignment explanation
Indices: 2827283--2827309 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2827273 AAAATATACA
2827283 AGAGAGAGAAAAAG
1 AGAGAGAGAAAAAG
2827297 AGAGAGAGAAAAA
1 AGAGAGAGAAAAA
2827310 AGTTATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (14 bp):
AGAGAGAGAAAAAG
Found at i:2828037 original size:2 final size:2
Alignment explanation
Indices: 2828030--2828060 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2828020 ATCCTGCCAC
2828030 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2828061 TGTTAGAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2840809 original size:20 final size:21
Alignment explanation
Indices: 2840779--2840818 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
2840769 CTAAGTTGTC
*
2840779 GAATATTTAATATTTTAGGTG
1 GAATATTTAATAGTTTAGGTG
2840800 GAAT-TTTAATAGTTTAGGT
1 GAATATTTAATAGTTTAGGT
2840819 TTAATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (21 bp):
GAATATTTAATAGTTTAGGTG
Found at i:2849191 original size:2 final size:2
Alignment explanation
Indices: 2849184--2849211 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2849174 TAAAAGGAAC
2849184 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2849212 CGCAGTAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2854208 original size:51 final size:51
Alignment explanation
Indices: 2854071--2854224 Score: 163
Period size: 52 Copynumber: 3.0 Consensus size: 51
2854061 TGGACAAGAA
* * * *
2854071 GACTTATAA-AAAAAATTCTAAG-AGAAAGAAAATTTTTAATAGGTAAGTTT
1 GACTTATAAGAAAAAATTCTAAGAAGAGAG-AGATTCTTAATAGGCAAGTTT
* * *
2854121 GATTTGTAAGAGAAAAATTCTAA-AAG-GAAATGGATTCTTAATAGGCAAGTTT
1 GACTTATAAGA-AAAAATTCTAAGAAGAGAGA--GATTCTTAATAGGCAAGTTT
* *
2854173 GACTTACAAGAAAAAATTCTAAGAAGAGAGAGATTCTTAATAAGCAAGTTT
1 GACTTATAAGAAAAAATTCTAAGAAGAGAGAGATTCTTAATAGGCAAGTTT
2854224 G
1 G
2854225 TATGGTTATA
Statistics
Matches: 85, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
50 8 0.09
51 33 0.39
52 41 0.48
53 3 0.04
ACGTcount: A:0.46, C:0.06, G:0.18, T:0.29
Consensus pattern (51 bp):
GACTTATAAGAAAAAATTCTAAGAAGAGAGAGATTCTTAATAGGCAAGTTT
Found at i:2854746 original size:31 final size:31
Alignment explanation
Indices: 2854708--2854790 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 31
2854698 GGCTTTTAGC
* *
2854708 CCAACAAATGATATCGGATCTGTGGTGTTCT
1 CCAACAAATGATATCAGAGCTGTGGTGTTCT
*
2854739 CCAACAAATGGTATCAGAGCTGTGGTGTTCT
1 CCAACAAATGATATCAGAGCTGTGGTGTTCT
* *
2854770 CCAACAAGTGGTATCAG-GCTG
1 CCAACAAATGATATCAGAGCTG
2854791 AAGGTTCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 4 0.08
31 44 0.92
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (31 bp):
CCAACAAATGATATCAGAGCTGTGGTGTTCT
Found at i:2854884 original size:25 final size:25
Alignment explanation
Indices: 2854855--2854909 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
2854845 TTCGAGACAT
*
2854855 GGAAGAGCTGAAA-GTTTGAGATGTA
1 GGAAGAGCT-AAAGGTTTAAGATGTA
*
2854880 GGAAGAGCTAAAGGTTTAAGATGTG
1 GGAAGAGCTAAAGGTTTAAGATGTA
2854905 GGAAG
1 GGAAG
2854910 TGCATGGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 3 0.11
25 24 0.89
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.22
Consensus pattern (25 bp):
GGAAGAGCTAAAGGTTTAAGATGTA
Found at i:2855271 original size:52 final size:51
Alignment explanation
Indices: 2855201--2855347 Score: 195
Period size: 52 Copynumber: 2.8 Consensus size: 51
2855191 GACTTGAAAA
*
2855201 AGAAGAATTCTAAGAGAAAGATGATTCTTAATAGGTAAGTTTGACTTACAAG
1 AGAAGAATTCTAAAAGAAAGA-GATTCTTAATAGGTAAGTTTGACTTACAAG
* *
2855253 AGAAGAATTTTAAAAGAAAAGGGATTCTTAATAGGTAAGTTTGACTTACAAG
1 AGAAGAATTCTAAAAG-AAAGAGATTCTTAATAGGTAAGTTTGACTTACAAG
* * * * *
2855305 AGAAGCATTCTAAGAGGAGAGAGATTCTTAATGGGCAAGTTTG
1 AGAAGAATTCTAA-AAGAAAGAGATTCTTAATAGGTAAGTTTG
2855348 TATGGTTATA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 77 0.93
53 6 0.07
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (51 bp):
AGAAGAATTCTAAAAGAAAGAGATTCTTAATAGGTAAGTTTGACTTACAAG
Found at i:2860972 original size:21 final size:21
Alignment explanation
Indices: 2860946--2860996 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
2860936 CGTCCAGGAG
2860946 CCATTTGTTTTTAGATTGCTA
1 CCATTTGTTTTTAGATTGCTA
*
2860967 CCATTTGTTTTTAGATTGCTG
1 CCATTTGTTTTTAGATTGCTA
*
2860988 TCATTTGTT
1 CCATTTGTT
2860997 ATTACCCAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.55
Consensus pattern (21 bp):
CCATTTGTTTTTAGATTGCTA
Found at i:2863792 original size:2 final size:2
Alignment explanation
Indices: 2863785--2863816 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
2863775 AGGCATTGAA
*
2863785 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2863817 CACTTGTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2864419 original size:10 final size:10
Alignment explanation
Indices: 2864395--2864424 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
2864385 TATTTTATCA
2864395 ATTAAAATA-
1 ATTAAAATAT
2864404 ATTAAAATAT
1 ATTAAAATAT
2864414 ATTAAAATAT
1 ATTAAAATAT
2864424 A
1 A
2864425 AAAATTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:2864436 original size:19 final size:19
Alignment explanation
Indices: 2864391--2864437 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
2864381 GAAATATTTT
*
2864391 ATCAATTAAAATAATTAAA
1 ATCAATTAAAATAATAAAA
2864410 AT-ATATTAAAAT-ATAAAA
1 ATCA-ATTAAAATAATAAAA
2864428 ATTCAATTAA
1 A-TCAATTAA
2864438 GCTCACGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 7 0.29
19 16 0.67
20 1 0.04
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (19 bp):
ATCAATTAAAATAATAAAA
Found at i:2875595 original size:4 final size:4
Alignment explanation
Indices: 2875586--2875615 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
2875576 ATTAACATGG
2875586 CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CA
2875616 CAGATGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:2918795 original size:2 final size:2
Alignment explanation
Indices: 2918788--2918814 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2918778 AGATGGCCCT
2918788 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
2918815 GTGCCGTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:2924654 original size:17 final size:18
Alignment explanation
Indices: 2924622--2924658 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
2924612 TTATATGTAT
*
2924622 ATTATATTTTATATAAAA
1 ATTATATTTGATATAAAA
2924640 ATTATA-TTGATATAAAA
1 ATTATATTTGATATAAAA
2924657 AT
1 AT
2924659 ATAAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
ATTATATTTGATATAAAA
Found at i:2925265 original size:20 final size:20
Alignment explanation
Indices: 2925240--2925301 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
2925230 AAGGGAAAAC
2925240 ATATATACATGATTGCATGT
1 ATATATACATGATTGCATGT
**
2925260 ATATATGACATGCAAGGCATGT
1 ATATAT-ACATG-ATTGCATGT
2925282 -TAATATACATGATTGCATGT
1 AT-ATATACATGATTGCATGT
2925302 GAAGAGAGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
20 13 0.37
21 11 0.31
22 11 0.31
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.35
Consensus pattern (20 bp):
ATATATACATGATTGCATGT
Found at i:2934775 original size:29 final size:30
Alignment explanation
Indices: 2934725--2934782 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
2934715 CTCTTTAACT
*
2934725 TTTAATTTGTATCAAAATAAAACCTTAATC
1 TTTAATTTGTACCAAAATAAAACCTTAATC
* *
2934755 TTTAATTT-TACCTAAATAAAATCTTAAT
1 TTTAATTTGTACCAAAATAAAACCTTAAT
2934783 ATAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (30 bp):
TTTAATTTGTACCAAAATAAAACCTTAATC
Found at i:2941151 original size:2 final size:2
Alignment explanation
Indices: 2941144--2941183 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
2941134 AAATGAGATG
2941144 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2941184 TAGTTAATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2966660 original size:32 final size:29
Alignment explanation
Indices: 2966620--2966688 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
2966610 ATTAATTTTT
*
2966620 TAAT-TTTTTAATTATATATATATTTATATAA
1 TAATATTTTTAA--ATATATATATTTA-AAAA
* *
2966651 TGATATTTTTAAATATTTATATTTAAAAA
1 TAATATTTTTAAATATATATATTTAAAAA
2966680 TAATATTTT
1 TAATATTTT
2966689 ATTAATTTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 11 0.33
30 12 0.36
31 3 0.09
32 7 0.21
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (29 bp):
TAATATTTTTAAATATATATATTTAAAAA
Found at i:2977234 original size:25 final size:25
Alignment explanation
Indices: 2977206--2977255 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
2977196 AAATAATATT
*
2977206 TTTATAAATTTTTATATATTATTAA
1 TTTATAAATTTTGATATATTATTAA
** *
2977231 TTTATTGATTTTGATATTTTATTAA
1 TTTATAAATTTTGATATATTATTAA
2977256 AATTTTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTATAAATTTTGATATATTATTAA
Found at i:2978141 original size:4 final size:4
Alignment explanation
Indices: 2978132--2978156 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
2978122 TATTCTGTCG
2978132 TTCT TTCT TTCT TTCT TTCT TTCT T
1 TTCT TTCT TTCT TTCT TTCT TTCT T
2978157 ACTAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:2978642 original size:22 final size:24
Alignment explanation
Indices: 2978617--2978660 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
2978607 ATAAAAAAAT
2978617 TTAAATATTAA-AAT-ATTATATA
1 TTAAATATTAAGAATAATTATATA
*
2978639 TTAAATTTTAAGAATAATTATA
1 TTAAATATTAAGAATAATTATA
2978661 AAAACTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 3 0.16
24 6 0.32
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
TTAAATATTAAGAATAATTATATA
Found at i:2979595 original size:14 final size:14
Alignment explanation
Indices: 2979562--2979605 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
2979552 AGAGTAAAGA
2979562 AAGTTATCATAC-AT
1 AAGTTAT-ATACTAT
*
2979576 -AGTTATATATTAT
1 AAGTTATATACTAT
2979589 AAGTTATATACTAT
1 AAGTTATATACTAT
2979603 AAG
1 AAG
2979606 ATTCACACTG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 3 0.12
13 8 0.31
14 15 0.58
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (14 bp):
AAGTTATATACTAT
Found at i:2981918 original size:34 final size:34
Alignment explanation
Indices: 2981875--2981942 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
2981865 TTTTTCAGAT
2981875 TACTCGTGATCACAGAAGCTTGTTTATGATGATC
1 TACTCGTGATCACAGAAGCTTGTTTATGATGATC
2981909 TACTCGTGATCACAGAAGCTTGTTTATGATGATC
1 TACTCGTGATCACAGAAGCTTGTTTATGATGATC
2981943 CTTTGCTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (34 bp):
TACTCGTGATCACAGAAGCTTGTTTATGATGATC
Found at i:2988276 original size:12 final size:13
Alignment explanation
Indices: 2988250--2988279 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
2988240 ACTATTTCCC
2988250 TTTCTTTTCTTTT
1 TTTCTTTTCTTTT
2988263 TTTCTTTT-TTTT
1 TTTCTTTTCTTTT
2988275 TTTCT
1 TTTCT
2988280 GTATATTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTCTTTTCTTTT
Found at i:2992102 original size:29 final size:29
Alignment explanation
Indices: 2992028--2992096 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
2992018 ATGATTTTTG
*
2992028 AATTATAACAAAATATTTATTATAATATTTA
1 AATTAT-A-AAAATATTTAATATAATATTTA
* *
2992059 AATTTTAAAAATATTTAATATGATATTTA
1 AATTATAAAAATATTTAATATAATATTTA
2992088 AATTATAAA
1 AATTATAAA
2992097 TTTATTAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 28 0.82
30 1 0.03
31 5 0.15
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (29 bp):
AATTATAAAAATATTTAATATAATATTTA
Found at i:2992938 original size:31 final size:31
Alignment explanation
Indices: 2992881--2992941 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
2992871 AAATTATGAT
* * *
2992881 ATATAAAATATGAAATTTGTAAATTTTATTA
1 ATATAAAATATAAAATATGAAAATTTTATTA
2992912 ATATAAAATATAAAATAT-AAATATTTTATT
1 ATATAAAATATAAAATATGAAA-ATTTTATT
2992942 TTATTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (31 bp):
ATATAAAATATAAAATATGAAAATTTTATTA
Found at i:2993000 original size:18 final size:18
Alignment explanation
Indices: 2992977--2993013 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2992967 AAAATAAAAA
*
2992977 ATTATTATTTTATATTAT
1 ATTATTATATTATATTAT
*
2992995 ATTATTATATTGTATTAT
1 ATTATTATATTATATTAT
2993013 A
1 A
2993014 GATTATCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTATTATATTATATTAT
Found at i:2993397 original size:27 final size:26
Alignment explanation
Indices: 2993359--2993417 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
2993349 GAAATCGATG
*
2993359 AAAAAAAATATAATAAGATATAAAGT
1 AAAAAAAATATAATAAGATATAAAGC
* *
2993385 AAAAAAATGTATAATAGGATATAAAGC
1 AAAAAAA-ATATAATAAGATATAAAGC
2993412 AAAAAA
1 AAAAAA
2993418 TATTTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (26 bp):
AAAAAAAATATAATAAGATATAAAGC
Done.