Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22157061
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 74000 characters in sequence are not A, C, G, or T
File 91 of 113
Found at i:18910678 original size:38 final size:37
Alignment explanation
Indices: 18910607--18910730 Score: 115
Period size: 37 Copynumber: 3.3 Consensus size: 37
18910597 TTCTTTTTAA
* * * *
18910607 TTTCTCTTATTTTTAAGAGAAACATTTTCATTACTTGTT
1 TTTCTATTTTTTTTAAG-GAAAAATTTTCATTACTT-AT
18910646 TTTCTATTTTTTTTAAGGAAATAATTTT-ATTACTTAT
1 TTTCTATTTTTTTTAAGGAAA-AATTTTCATTACTTAT
* * * * * *
18910683 TTTCTTTTTTTTTTAAAGAAAGACTCTCACTACTTAT
1 TTTCTATTTTTTTTAAGGAAAAATTTTCATTACTTAT
18910720 TCTTCTATTTT
1 T-TTCTATTTT
18910731 ATCTAGAAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
36 3 0.04
37 29 0.41
38 19 0.27
39 20 0.28
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (37 bp):
TTTCTATTTTTTTTAAGGAAAAATTTTCATTACTTAT
Found at i:18917904 original size:27 final size:28
Alignment explanation
Indices: 18917844--18917905 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 28
18917834 ATATTAAATT
18917844 TAAATAAATATTTAAATAAATTCAGATA
1 TAAATAAATATTTAAATAAATTCAGATA
* * *
18917872 T-TATAAATA-TTAAATGAATT-TGTATA
1 TAAATAAATATTTAAATAAATTCAG-ATA
18917898 TAAATAAA
1 TAAATAAA
18917906 AAAATAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
25 1 0.04
26 14 0.50
27 12 0.43
28 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.39
Consensus pattern (28 bp):
TAAATAAATATTTAAATAAATTCAGATA
Found at i:18927213 original size:2 final size:2
Alignment explanation
Indices: 18927206--18927250 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
18927196 ATAATGACAG
*
18927206 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18927247 TA TA
1 TA TA
18927251 GGTTATTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:18929562 original size:17 final size:17
Alignment explanation
Indices: 18929540--18929575 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
18929530 ATTCACTAAA
18929540 TGAAATTAATTGATTTT
1 TGAAATTAATTGATTTT
18929557 TGAAATTAATTGATTTT
1 TGAAATTAATTGATTTT
18929574 TG
1 TG
18929576 TTAGACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (17 bp):
TGAAATTAATTGATTTT
Found at i:18931112 original size:20 final size:21
Alignment explanation
Indices: 18931087--18931127 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
18931077 CAATACATCA
18931087 TATTA-TTTAAATAATATTTT
1 TATTACTTTAAATAATATTTT
*
18931107 TATTATCTTTAATTAATATTT
1 TATTA-CTTTAAATAATATTT
18931128 ATAAATACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
22 13 0.72
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTACTTTAAATAATATTTT
Found at i:18932226 original size:14 final size:14
Alignment explanation
Indices: 18932204--18932249 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
18932194 TATTTTTTTA
*
18932204 TTATTTATTTAATT
1 TTATATATTTAATT
18932218 TTATATATTT--TT
1 TTATATATTTAATT
*
18932230 ATATATATTTAATT
1 TTATATATTTAATT
18932244 TTATAT
1 TTATAT
18932250 TTATATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 11 0.41
14 16 0.59
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATATATTTAATT
Found at i:18932238 original size:26 final size:27
Alignment explanation
Indices: 18932198--18932249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
18932188 AAAAATTATT
*
18932198 TTTTTATTATTTATTTAATTTTATATA
1 TTTTTATTATATATTTAATTTTATATA
18932225 TTTTTA-TATATATTTAATTTTATAT
1 TTTTTATTATATATTTAATTTTATAT
18932250 TTATATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTTTATTATATATTTAATTTTATATA
Found at i:18933530 original size:7 final size:8
Alignment explanation
Indices: 18933513--18933587 Score: 55
Period size: 8 Copynumber: 9.1 Consensus size: 8
18933503 TATTGTCATG
18933513 ATATAAAA
1 ATATAAAA
18933521 ATATAAAA
1 ATATAAAA
*
18933529 TAAATAATAA
1 -ATATAA-AA
*
18933539 ATA-ATAA
1 ATATAAAA
* *
18933546 ATTTAATA
1 ATATAAAA
18933554 AT-TAGAAA
1 ATATA-AAA
*
18933562 AAATAAATA
1 ATATAAA-A
18933571 ATATAAAA
1 ATATAAAA
18933579 ATATAAAA
1 ATATAAAA
18933587 A
1 A
18933588 CAATATAATT
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
7 6 0.12
8 28 0.54
9 16 0.31
10 2 0.04
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (8 bp):
ATATAAAA
Found at i:18933572 original size:17 final size:17
Alignment explanation
Indices: 18933515--18933585 Score: 60
Period size: 17 Copynumber: 4.3 Consensus size: 17
18933505 TTGTCATGAT
18933515 ATAAA-AATATAAAATAA
1 ATAAATAATATAAAA-AA
*
18933532 AT-AATAA-ATAATAAA
1 ATAAATAATATAAAAAA
* *
18933547 TTTAATAAT-TAGAAAAA
1 ATAAATAATATA-AAAAA
*
18933564 ATAAATAATATAAAAAT
1 ATAAATAATATAAAAAA
18933581 ATAAA
1 ATAAA
18933586 AACAATATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
15 3 0.07
16 14 0.33
17 24 0.56
18 2 0.05
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.28
Consensus pattern (17 bp):
ATAAATAATATAAAAAA
Found at i:18933617 original size:24 final size:24
Alignment explanation
Indices: 18933560--18933603 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
18933550 AATAATTAGA
*
18933560 AAAAATAA-ATAATATAAAAATAT
1 AAAAACAATATAATATAAAAATAT
18933583 AAAAACAATATAAT-TAAAAAT
1 AAAAACAATATAATATAAAAAT
18933604 TTTAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (24 bp):
AAAAACAATATAATATAAAAATAT
Found at i:18939407 original size:8 final size:8
Alignment explanation
Indices: 18939391--18939420 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
18939381 GGATAATTGA
18939391 TTTTGTTT
1 TTTTGTTT
*
18939399 TTTTTTTT
1 TTTTGTTT
18939407 TTTTGTTT
1 TTTTGTTT
18939415 TTTTGT
1 TTTTGT
18939421 ATAAAGAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (8 bp):
TTTTGTTT
Found at i:18940036 original size:25 final size:26
Alignment explanation
Indices: 18939977--18940037 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 26
18939967 ATACAACATT
*
18939977 TACATATAA-AAATCAATTAAATAAA
1 TACATATAATAAATCAATGAAATAAA
*
18940002 TAGATA-AATAAATCAATG-AA-AAA
1 TACATATAATAAATCAATGAAATAAA
18940025 TAACATATAATAA
1 T-ACATATAATAA
18940038 GATAAATTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 4 0.13
24 8 0.27
25 18 0.60
ACGTcount: A:0.64, C:0.07, G:0.03, T:0.26
Consensus pattern (26 bp):
TACATATAATAAATCAATGAAATAAA
Found at i:18940062 original size:5 final size:5
Alignment explanation
Indices: 18940054--18940082 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
18940044 TTCAATTTAA
18940054 AATTT AATTT AATTT AATTT AATTT AATT
1 AATTT AATTT AATTT AATTT AATTT AATT
18940083 CAATATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
AATTT
Found at i:18940193 original size:11 final size:11
Alignment explanation
Indices: 18940177--18940207 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
18940167 TAATATGTTG
18940177 TAAGATGAAAT
1 TAAGATGAAAT
18940188 TAAGATGAAAT
1 TAAGATGAAAT
18940199 TAAGATGAA
1 TAAGATGAA
18940208 GTGTGACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.19, T:0.26
Consensus pattern (11 bp):
TAAGATGAAAT
Found at i:18940380 original size:18 final size:18
Alignment explanation
Indices: 18940357--18940391 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18940347 TTGGTATTAG
*
18940357 AGCCTATCAATCTTTTTA
1 AGCCTATCAACCTTTTTA
18940375 AGCCTATCAACCTTTTT
1 AGCCTATCAACCTTTTT
18940392 GAGGTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.43
Consensus pattern (18 bp):
AGCCTATCAACCTTTTTA
Found at i:18944928 original size:8 final size:8
Alignment explanation
Indices: 18944917--18944947 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
18944907 TACAAAAGAA
18944917 AAAAATTT
1 AAAAATTT
18944925 AAAAATTT
1 AAAAATTT
*
18944933 AAAAATTC
1 AAAAATTT
18944941 AAAAATT
1 AAAAATT
18944948 CACTATCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (8 bp):
AAAAATTT
Found at i:18946660 original size:38 final size:38
Alignment explanation
Indices: 18946618--18946691 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
18946608 ACCGTTCTTG
* *
18946618 TAAAAAATTTTCTTATGAAAGAAAGATCTTAAAACCCC
1 TAAAAAATTCTCTTATGAAAGAAAGATCTCAAAACCCC
* * *
18946656 TAAAAACTTCTCTTATGAAATAGAGATCTCAAAACC
1 TAAAAAATTCTCTTATGAAAGAAAGATCTCAAAACC
18946692 TTTATTGTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (38 bp):
TAAAAAATTCTCTTATGAAAGAAAGATCTCAAAACCCC
Found at i:18947180 original size:4 final size:4
Alignment explanation
Indices: 18947171--18947198 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
18947161 GCATTTCTGA
18947171 AAAC AAAC AAAC AAAC AAAC AAAC AAAC
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC
18947199 TTTAATAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.25, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:18947255 original size:11 final size:11
Alignment explanation
Indices: 18947241--18947274 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
18947231 AATAGTTTTA
18947241 ATAAAGTTGAC
1 ATAAAGTTGAC
*
18947252 ATAAAATTGAC
1 ATAAAGTTGAC
18947263 ATAAAGTTGAC
1 ATAAAGTTGAC
18947274 A
1 A
18947275 AACTTGACGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (11 bp):
ATAAAGTTGAC
Found at i:18948556 original size:27 final size:25
Alignment explanation
Indices: 18948496--18948568 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 25
18948486 TAAATCATTC
18948496 AAAACA-TTCATCAAATCATAACTTT
1 AAAACATTTCA-CAAATCATAACTTT
* * *
18948521 AAAATATTTCACAAATCATCATTATGT
1 AAAACATTTCACAAATCATAACT-T-T
18948548 AAAACATTTCGA-AAATCATAA
1 AAAACATTTC-ACAAATCATAA
18948569 GTTAACATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 15 0.38
26 5 0.13
27 18 0.46
28 1 0.03
ACGTcount: A:0.49, C:0.16, G:0.03, T:0.32
Consensus pattern (25 bp):
AAAACATTTCACAAATCATAACTTT
Found at i:18956344 original size:19 final size:19
Alignment explanation
Indices: 18956320--18956356 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18956310 TTTAGTTTGC
* *
18956320 TTTGAAAGTCATTTAATGT
1 TTTGAAACTCATTAAATGT
18956339 TTTGAAACTCATTAAATG
1 TTTGAAACTCATTAAATG
18956357 ACAATAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (19 bp):
TTTGAAACTCATTAAATGT
Found at i:18958264 original size:30 final size:30
Alignment explanation
Indices: 18958225--18958284 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
18958215 ATGATGATAG
*
18958225 CTCAGACTCAAACTCAAATGATTATTCAAA
1 CTCAAACTCAAACTCAAATGATTATTCAAA
*
18958255 CTCAAACTCAAACTCAGATGATTATTCAAA
1 CTCAAACTCAAACTCAAATGATTATTCAAA
18958285 TGATCAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (30 bp):
CTCAAACTCAAACTCAAATGATTATTCAAA
Found at i:18961579 original size:14 final size:14
Alignment explanation
Indices: 18961544--18961579 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
18961534 AATTTTACCT
*
18961544 TTACTTTATTAAAG
1 TTACTTTATTAAAA
18961558 TTACTTTATTAAAA
1 TTACTTTATTAAAA
*
18961572 TTATTTTA
1 TTACTTTA
18961580 AGTTAAGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (14 bp):
TTACTTTATTAAAA
Found at i:18964515 original size:14 final size:14
Alignment explanation
Indices: 18964498--18964527 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
18964488 GACTTAAAAC
18964498 AACTTTAATAAAGT
1 AACTTTAATAAAGT
18964512 AACTTTAATAAAGT
1 AACTTTAATAAAGT
18964526 AA
1 AA
18964528 AGGTAAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (14 bp):
AACTTTAATAAAGT
Found at i:18974752 original size:22 final size:22
Alignment explanation
Indices: 18974724--18974776 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
18974714 TTATTCACCC
*
18974724 AAAAAAAAAACACAACTTAACA
1 AAAAAAAAAACACAACGTAACA
* **
18974746 AAAAAAAAAACACCACGTATGA
1 AAAAAAAAAACACAACGTAACA
18974768 AAAAAAAAA
1 AAAAAAAAA
18974777 TTGATTCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.74, C:0.15, G:0.04, T:0.08
Consensus pattern (22 bp):
AAAAAAAAAACACAACGTAACA
Found at i:18975074 original size:20 final size:20
Alignment explanation
Indices: 18975051--18975097 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
18975041 CAACTTAATC
18975051 AAAAAAA-TCACCATGCATGA
1 AAAAAAAGT-ACCATGCATGA
*
18975071 AAAAAAAGTACCATGTATGA
1 AAAAAAAGTACCATGCATGA
18975091 AAAAAAA
1 AAAAAAA
18975098 ATCAATACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.62, C:0.13, G:0.11, T:0.15
Consensus pattern (20 bp):
AAAAAAAGTACCATGCATGA
Found at i:18977207 original size:17 final size:17
Alignment explanation
Indices: 18977185--18977218 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
18977175 TCCACCAATA
* *
18977185 TAATATTTATCCATTAT
1 TAATATTGATCAATTAT
18977202 TAATATTGATCAATTAT
1 TAATATTGATCAATTAT
18977219 AAAATTTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.50
Consensus pattern (17 bp):
TAATATTGATCAATTAT
Found at i:18978089 original size:145 final size:145
Alignment explanation
Indices: 18977806--18978090 Score: 315
Period size: 145 Copynumber: 2.0 Consensus size: 145
18977796 GGAAAGTATA
* * * *** *
18977806 AAATTACCAAAATACCCTTATAAAGGTATTTTCATAATTTACCCTTTTCGAGCTTGGATTTTCAT
1 AAATTACCAAAATACCCTTATAAAGGTATCTTCATAATTTACACTTTTCAAGCTCAAATTTTCAC
* * * * * * **
18977871 AAAACTTTTTAGATCTCAATTTTATAATATTTCATGATTTTTAGTGCATTTGAAATCACAGTAAT
66 AAAACTTTTCAAATATCAATTCTATAATATATCATGATTTTTAGTGCATTTAAAATCACAAAAAT
*
18977936 GCCTTGAAAAGTGTG
131 GCCATGAAAAGTGTG
* *
18977951 AAATTACCAAAATACTCC-TATAAAGTTATCTTCGTAATTTA-ACTTTTCCAAGCTCAAATTTTC
1 AAATTACCAAAATAC-CCTTATAAAGGTATCTTCATAATTTACACTTTT-CAAGCTCAAATTTTC
* * * *
18978014 ACGAAACTTTTCAAATATCAATTCTATAATATATCATGATTTTTGGTG-TTTTAAAATCTCAAAA
64 ACAAAACTTTTCAAATATCAATTCTATAATATATCATGATTTTTAGTGCATTTAAAATCACAAAA
*
18978078 ATGAGCATGAAAA
129 ATG-CCATGAAAA
18978091 CATTGATTTC
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
144 19 0.17
145 93 0.82
146 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (145 bp):
AAATTACCAAAATACCCTTATAAAGGTATCTTCATAATTTACACTTTTCAAGCTCAAATTTTCAC
AAAACTTTTCAAATATCAATTCTATAATATATCATGATTTTTAGTGCATTTAAAATCACAAAAAT
GCCATGAAAAGTGTG
Found at i:18979647 original size:18 final size:18
Alignment explanation
Indices: 18979624--18979658 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18979614 ATTTTTGATA
18979624 TGATAATAATAATAATGT
1 TGATAATAATAATAATGT
*
18979642 TGATAATAATAGTAATG
1 TGATAATAATAATAATG
18979659 GAAATCTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (18 bp):
TGATAATAATAATAATGT
Found at i:18991191 original size:10 final size:10
Alignment explanation
Indices: 18991176--18991214 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
18991166 TTAAAAAAAA
18991176 CTTTCTTTTC
1 CTTTCTTTTC
*
18991186 CTTTCTTTTT
1 CTTTCTTTTC
18991196 CTTTCCTTTTC
1 CTTT-CTTTTC
*
18991207 TTTTCTTT
1 CTTTCTTT
18991215 ATTAATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (10 bp):
CTTTCTTTTC
Found at i:18991202 original size:15 final size:15
Alignment explanation
Indices: 18991177--18991214 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
18991167 TAAAAAAAAC
18991177 TTTCTTTTCC-TTTCTT
1 TTTC-TTTCCTTTTC-T
18991193 TTTCTTTCCTTTTCT
1 TTTCTTTCCTTTTCT
18991208 TTTCTTT
1 TTTCTTT
18991215 ATTAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTTCCTTTTCT
Found at i:18997153 original size:13 final size:13
Alignment explanation
Indices: 18997135--18997159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18997125 TATATTATGT
18997135 TTATATCATATTA
1 TTATATCATATTA
18997148 TTATATCATATT
1 TTATATCATATT
18997160 TTTAATTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATATCATATTA
Found at i:18999301 original size:2 final size:2
Alignment explanation
Indices: 18999296--18999320 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
18999286 GCACATTTCT
18999296 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
18999321 TGGCATAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19000875 original size:20 final size:20
Alignment explanation
Indices: 19000846--19000883 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19000836 GAAAATCGCA
* *
19000846 TAGAGTGAGAAACAAAAGAG
1 TAGAGAGAGAAAAAAAAGAG
19000866 TAGAGAGAGAAAAAAAAG
1 TAGAGAGAGAAAAAAAAG
19000884 TGATTTGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.29, T:0.08
Consensus pattern (20 bp):
TAGAGAGAGAAAAAAAAGAG
Found at i:19000905 original size:17 final size:18
Alignment explanation
Indices: 19000872--19000906 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
19000862 AGAGTAGAGA
*
19000872 GAGAAAAAAAAGTGATTT
1 GAGAAAAAAAAGAGATTT
19000890 GAGAAAAAAAA-AGATTT
1 GAGAAAAAAAAGAGATTT
19000907 TAGGCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (18 bp):
GAGAAAAAAAAGAGATTT
Found at i:19001141 original size:4 final size:4
Alignment explanation
Indices: 19001128--19001173 Score: 51
Period size: 4 Copynumber: 12.0 Consensus size: 4
19001118 TCTATTTACC
* **
19001128 TATT TA-T TATT TATT TGTT TATT TATT T-TT TGCT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
19001174 GATTAAATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
3 6 0.17
4 29 0.83
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:19001148 original size:15 final size:16
Alignment explanation
Indices: 19001130--19001173 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
19001120 TATTTACCTA
19001130 TTTA-TTATTTATTTG
1 TTTATTTATTTATTTG
19001145 TTTATTTATTT-TTTG
1 TTTATTTATTTATTTG
*
19001160 CTTATTTATTTATT
1 TTTATTTATTTATT
19001174 GATTAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 18 0.69
16 8 0.31
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (16 bp):
TTTATTTATTTATTTG
Found at i:19001150 original size:19 final size:19
Alignment explanation
Indices: 19001128--19001173 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
19001118 TCTATTTACC
* *
19001128 TATTTATTATTTATTTGTT
1 TATTTATTATTTACTTATT
* *
19001147 TATTTATTTTTTGCTTATT
1 TATTTATTATTTACTTATT
19001166 TATTTATT
1 TATTTATT
19001174 GATTAAATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (19 bp):
TATTTATTATTTACTTATT
Found at i:19001473 original size:59 final size:59
Alignment explanation
Indices: 19001311--19001898 Score: 571
Period size: 59 Copynumber: 9.8 Consensus size: 59
19001301 ATGTTGATAA
* **
19001311 GAAAAGTTGAAAGTATCAATTT-T-TTTTAAATAAAAATTTCAAAAAAAGTATTTTTGAG
1 GAAAAGTTAAAAGTATCAATTTCTCTTGAAAATAAAAATTT-AAAAAAAGTATTTTTGAG
* * *
19001369 GAAAAGTTGAAAA-TATCAAATTT-TCTTGAAAATAAAAA-TAAAAAAAAGCATTTTTTAG
1 GAAAAGTT-AAAAGTATC-AATTTCTCTTGAAAATAAAAATTTAAAAAAAGTATTTTTGAG
*
19001427 GAAAAGTTAAAAGTATTAACTTTCT-TTG-AAATAAAAATTTAAAAAAAAGGTAAAAAAAGGTAT
1 GAAAAGTTAAAAGTATCAA-TTTCTCTTGAAAATAAAAA-TT----------TAAAAAAA-GTAT
19001490 TTTTGAG
53 TTTTGAG
* **
19001497 GAAAATTTGAAAA-TATCAAATTT-TCTTGAAAATAAAAATTT-TGAAAAGTATTTTTGAG
1 GAAAAGTT-AAAAGTATC-AATTTCTCTTGAAAATAAAAATTTAAAAAAAGTATTTTTGAG
* * * *
19001555 AAAAAGTTGAAAGTATCAAATTT-TCTTGAAAATAAAAATTTCAAAAAAGTTATTTTTTAG
1 GAAAAGTTAAAAGTATC-AATTTCTCTTGAAAATAAAAATTTAAAAAAAG-TATTTTTGAG
* *
19001615 GAAAAGTTGAAAGTATCAAGTTTC-CTTGAAAATAAAAA-TTAAAAAAATATATTTTTGAG
1 GAAAAGTTAAAAGTATCAA-TTTCTCTTGAAAATAAAAATTTAAAAAAA-GTATTTTTGAG
*
19001674 GAAAAGTTAAAAGTATCAACTTTC-CTTGAAAATAAAAATTTTGAAAAAAAATATTTTTGAG
1 GAAAAGTTAAAAGTATCAA-TTTCTCTTGAAAATAAAAA-TTT-AAAAAAAGTATTTTTGAG
**
19001735 GAAAAGTTGAAAA-TATCAATTT-TCCTTGAAAATAAAAATTTCGAAAAAGTATTTTTGAG
1 GAAAAGTT-AAAAGTATCAATTTCT-CTTGAAAATAAAAATTTAAAAAAAGTATTTTTGAG
* * ** *
19001794 GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAA-TTGCAAAAAGCATTTTTGGAG
1 GAAAAGTTAAAAGTATCAATTTCTCTTGAAAATAAAAATTTAAAAAAAGTATTTTT-GAG
* *
19001853 GAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAA
1 GAAAAGTTAAAAGTATCAATTTCTCTTGAAAATAAAAATTTAAAAA
19001899 TGCCTTAAGA
Statistics
Matches: 455, Mismatches: 36, Indels: 76
0.80 0.06 0.13
Matches are distributed among these distances:
57 18 0.04
58 107 0.24
59 162 0.36
60 66 0.15
61 41 0.09
62 11 0.02
69 8 0.02
70 27 0.06
71 15 0.03
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.34
Consensus pattern (59 bp):
GAAAAGTTAAAAGTATCAATTTCTCTTGAAAATAAAAATTTAAAAAAAGTATTTTTGAG
Found at i:19001474 original size:128 final size:129
Alignment explanation
Indices: 19001351--19001833 Score: 478
Period size: 120 Copynumber: 3.9 Consensus size: 129
19001341 TAAAAATTTC
19001351 AAAAAAA-GTATTTTTGAGGAAAAGTTGAAAATATCAAATTTTCTTGAAAATAAAAATAAAAAAA
1 AAAAAAAGGTATTTTTGAGGAAAAGTTGAAAATATCAAATTTTCTTGAAAATAAAAATAAAAAAA
* * * *
19001415 AGCATTTTTTAGGAAAAGTTAAAAGTAT-TAACTTTCTTTG-AAATAAAAATTTAAAAAAAAGGT
66 AGCATTTTTGAGAAAAAGTTAAAAGTATCAAATTTTC-TTGAAAATAAAAATTTAAAAAAAAGGT
* ****
19001478 AAAAAAAGGTATTTTTGAGGAAAATTTGAAAATATCAAATTTTCTTGAAAATAAAAATTTTGAAA
1 AAAAAAAGGTATTTTTGAGGAAAAGTTGAAAATATCAAATTTTCTTGAAAATAAAAATAAAAAAA
* * *
19001543 AGTATTTTTGAGAAAAAGTTGAAAGTATCAAATTTTCTTGAAAATAAAAATTT-CAAAAAA-GT
66 AGCATTTTTGAGAAAAAGTTAAAAGTATCAAATTTTCTTGAAAATAAAAATTTAAAAAAAAGGT
* * * *
19001605 ---------TATTTTTTAGGAAAAGTTGAAAGTATCAAGTTTCCTTGAAAATAAAAATTAAAAAA
1 AAAAAAAGGTATTTTTGAGGAAAAGTTGAAAATATCAAATTTTCTTGAAAATAAAAA-TAAAAAA
* * * * *
19001661 ATA-TATTTTTGAGGAAAAGTTAAAAGTATCAACTTTCCTTGAAAATAAAAATTT--------TG
65 A-AGCATTTTTGAGAAAAAGTTAAAAGTATCAAATTTTCTTGAAAATAAAAATTTAAAAAAAAGG
19001717 -
129 T
* ***
19001717 AAAAAAA-ATATTTTTGAGGAAAAGTTGAAAATATC-AATTTTCCTTGAAAATAAAAATTTCGAA
1 AAAAAAAGGTATTTTTGAGGAAAAGTTGAAAATATCAAATTTT-CTTGAAAATAAAAA-TAAAAA
* * * *
19001780 AAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATT
64 AAAGCATTTTTGAGAAAAAGTTAAAAGTATCAAATTTTCTTGAAAATAAAAATT
19001834 GCAAAAAGCA
Statistics
Matches: 305, Mismatches: 35, Indels: 39
0.80 0.09 0.10
Matches are distributed among these distances:
113 1 0.00
118 43 0.14
119 56 0.18
120 93 0.30
127 9 0.03
128 85 0.28
129 18 0.06
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.34
Consensus pattern (129 bp):
AAAAAAAGGTATTTTTGAGGAAAAGTTGAAAATATCAAATTTTCTTGAAAATAAAAATAAAAAAA
AGCATTTTTGAGAAAAAGTTAAAAGTATCAAATTTTCTTGAAAATAAAAATTTAAAAAAAAGGT
Found at i:19001537 original size:18 final size:19
Alignment explanation
Indices: 19001503--19001538 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
19001493 TGAGGAAAAT
*
19001503 TTGAAAATATCAAATTTTC
1 TTGAAAATATAAAATTTTC
19001522 TTGAAAATA-AAAATTTT
1 TTGAAAATATAAAATTTT
19001539 GAAAAGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (19 bp):
TTGAAAATATAAAATTTTC
Found at i:19006387 original size:22 final size:22
Alignment explanation
Indices: 19006354--19006395 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
19006344 AGGGTTTTAA
19006354 ATTTTGGAGTTTTG-GATTTTTT
1 ATTTTGGAG-TTTGAGATTTTTT
19006376 ATTTTAGG-GTTTGAGATTTT
1 ATTTT-GGAGTTTGAGATTTT
19006396 AGAGTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.22
22 12 0.67
23 2 0.11
ACGTcount: A:0.17, C:0.00, G:0.24, T:0.60
Consensus pattern (22 bp):
ATTTTGGAGTTTGAGATTTTTT
Found at i:19006456 original size:14 final size:14
Alignment explanation
Indices: 19006372--19006460 Score: 58
Period size: 14 Copynumber: 6.4 Consensus size: 14
19006362 GTTTTGGATT
19006372 TTTTA-TTTTAGGG
1 TTTTAGTTTTAGGG
* *
19006385 TTTGAGATTTTAGAG
1 TTTTAG-TTTTAGGG
* *
19006400 TTTTAATTTAAGGG
1 TTTTAGTTTTAGGG
* *
19006414 -TTAAGGATTTAGGG
1 TTTTA-GTTTTAGGG
* *
19006428 TTTGA-TGTTTGGGG
1 TTTTAGT-TTTAGGG
19006442 TTTTAGTTTTAGGG
1 TTTTAGTTTTAGGG
19006456 TTTTA
1 TTTTA
19006461 AGGGTTTAAG
Statistics
Matches: 55, Mismatches: 15, Indels: 11
0.68 0.19 0.14
Matches are distributed among these distances:
13 7 0.13
14 33 0.60
15 15 0.27
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (14 bp):
TTTTAGTTTTAGGG
Found at i:19006523 original size:21 final size:22
Alignment explanation
Indices: 19006499--19006540 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
19006489 GTTTTTAGGC
*
19006499 TTTAAGGTTTG-AGGTTTTGAT
1 TTTAAGGTTTGAAGGGTTTGAT
19006520 TTTAAGGTTTGAAGGGTTTGA
1 TTTAAGGTTTGAAGGGTTTGA
19006541 GATTTTGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (22 bp):
TTTAAGGTTTGAAGGGTTTGAT
Found at i:19006540 original size:30 final size:28
Alignment explanation
Indices: 19006483--19006562 Score: 90
Period size: 30 Copynumber: 2.8 Consensus size: 28
19006473 CTAATTTTAG
*
19006483 GGTTTTG-TTTTTAGGCTTTAAGGTTTGA
1 GGTTTTGATTTTAAGG-TTTAAGGTTTGA
19006511 GGTTTTGATTTTAAGGTTTGAAGGGTTTGA
1 GGTTTTGATTTTAAGGTTT-AA-GGTTTGA
* * *
19006541 GATTTTGATCTTAGGGTTTAAG
1 GGTTTTGATTTTAAGGTTTAAG
19006563 ATTTTAGGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
28 11 0.24
29 11 0.24
30 23 0.51
ACGTcount: A:0.19, C:0.03, G:0.30, T:0.49
Consensus pattern (28 bp):
GGTTTTGATTTTAAGGTTTAAGGTTTGA
Found at i:19006582 original size:15 final size:15
Alignment explanation
Indices: 19006376--19006575 Score: 57
Period size: 14 Copynumber: 13.9 Consensus size: 15
19006366 TGGATTTTTT
*
19006376 ATTTTAGGGTTTGAG
1 ATTTTAGGGTTTAAG
* *
19006391 ATTTTAGAGTTTTA-
1 ATTTTAGGGTTTAAG
*
19006405 ATTTAAGGG-TTAAGG
1 ATTTTAGGGTTTAA-G
19006420 A-TTTAGGGTTT--G
1 ATTTTAGGGTTTAAG
* *
19006432 ATGTTTGGGGTTTTAG
1 AT-TTTAGGGTTTAAG
19006448 -TTTTAGGGTTTTAAG
1 ATTTTAGGG-TTTAAG
** * **
19006463 GGTTTAAGGCCT-A-
1 ATTTTAGGGTTTAAG
*
19006476 ATTTTAGGGTTT-TG
1 ATTTTAGGGTTTAAG
* *
19006490 TTTTTAGGCTTTAAG
1 ATTTTAGGGTTTAAG
* * *
19006505 GTTTGA-GGTTT-TG
1 ATTTTAGGGTTTAAG
*
19006518 ATTTTAAGGTTTGAAG
1 ATTTTAGGGTTT-AAG
** * *
19006534 GGTTT-GAGATTT-TG
1 ATTTTAG-GGTTTAAG
*
19006548 ATCTTAGGGTTTAAG
1 ATTTTAGGGTTTAAG
19006563 ATTTTAGGGTTTA
1 ATTTTAGGGTTTA
19006576 GGGTTTTGAT
Statistics
Matches: 128, Mismatches: 40, Indels: 34
0.63 0.20 0.17
Matches are distributed among these distances:
12 2 0.02
13 15 0.12
14 55 0.43
15 41 0.32
16 15 0.12
ACGTcount: A:0.21, C:0.02, G:0.29, T:0.48
Consensus pattern (15 bp):
ATTTTAGGGTTTAAG
Found at i:19006588 original size:21 final size:21
Alignment explanation
Indices: 19006517--19006581 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 21
19006507 TTGAGGTTTT
*
19006517 GATTTTAAGGTTTGAAGGGTTTGA
1 GATTTT-AGGTTT--AGGGTTTAA
*
19006541 GATTTT-GATCTTAGGGTTTAA
1 GATTTTAGGT-TTAGGGTTTAA
19006562 GATTTTAGGGTTTAGGGTTT
1 GATTTTA-GGTTTAGGGTTT
19006582 TGATTTTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
21 14 0.40
22 11 0.31
23 4 0.11
24 6 0.17
ACGTcount: A:0.22, C:0.02, G:0.31, T:0.46
Consensus pattern (21 bp):
GATTTTAGGTTTAGGGTTTAA
Found at i:19006596 original size:21 final size:22
Alignment explanation
Indices: 19006532--19006598 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 22
19006522 TAAGGTTTGA
* *
19006532 AGGGTTTGAGA-TTTTGATCTT
1 AGGGTTTAAGATTTTTGATTTT
* **
19006553 AGGGTTTAAGATTTTAGGGTTT
1 AGGGTTTAAGATTTTTGATTTT
*
19006575 AGGGTTT-TGATTTTTGATTTT
1 AGGGTTTAAGATTTTTGATTTT
19006596 AGG
1 AGG
19006599 ATTAAGGTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
21 23 0.64
22 13 0.36
ACGTcount: A:0.19, C:0.01, G:0.30, T:0.49
Consensus pattern (22 bp):
AGGGTTTAAGATTTTTGATTTT
Found at i:19006621 original size:28 final size:29
Alignment explanation
Indices: 19006555--19006623 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 29
19006545 TTGATCTTAG
* * *
19006555 GGTTTAAGATTTTAGGGTTTAGGGTTTTGA
1 GGTTT-AGATTTTAGGGATTAAGGTTTTAA
* *
19006585 -TTTTTGATTTTA-GGATTAAGGTTTTAA
1 GGTTTAGATTTTAGGGATTAAGGTTTTAA
19006612 GGTTTAGATTTT
1 GGTTTAGATTTT
19006624 TTAATTAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
27 12 0.39
28 16 0.52
29 3 0.10
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (29 bp):
GGTTTAGATTTTAGGGATTAAGGTTTTAA
Found at i:19007093 original size:8 final size:8
Alignment explanation
Indices: 19007080--19007124 Score: 62
Period size: 7 Copynumber: 6.1 Consensus size: 8
19007070 ATAACATATA
19007080 AAAAAATT
1 AAAAAATT
19007088 AAAAAATT
1 AAAAAATT
19007096 -AAAAATT
1 AAAAAATT
19007103 -AAAAA-T
1 AAAAAATT
19007109 AAAAAA-T
1 AAAAAATT
19007116 AAAAAATT
1 AAAAAATT
19007124 A
1 A
19007125 CCTAAACCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 1 0.03
7 24 0.69
8 10 0.29
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAAAATT
Found at i:19007111 original size:21 final size:22
Alignment explanation
Indices: 19007081--19007124 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
19007071 TAACATATAA
*
19007081 AAAAATTAAAAAATTAAAAATT
1 AAAAATTAAAAAATAAAAAATT
19007103 AAAAA-TAAAAAATAAAAAATT
1 AAAAATTAAAAAATAAAAAATT
19007124 A
1 A
19007125 CCTAAACCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (22 bp):
AAAAATTAAAAAATAAAAAATT
Found at i:19008518 original size:37 final size:37
Alignment explanation
Indices: 19008477--19008582 Score: 108
Period size: 37 Copynumber: 2.9 Consensus size: 37
19008467 TCAAGTGATA
* *
19008477 AAGAAAACGATCGGGACGACACCGTGAGTCAAGGAGT
1 AAGAAAACGATCGGGACAACACCGTGAGTCAAGAAGT
* * *
19008514 AAGAAAACGATGGGGACAACACTGTGAGTCGAGAAGT
1 AAGAAAACGATCGGGACAACACCGTGAGTCAAGAAGT
* * *
19008551 AA-AGAATCGA-CTGGGACAACACCATAAGTCAA
1 AAGA-AAACGATC-GGGACAACACCGTGAGTCAA
19008583 AAATTATGTC
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
36 1 0.02
37 55 0.98
ACGTcount: A:0.42, C:0.18, G:0.28, T:0.12
Consensus pattern (37 bp):
AAGAAAACGATCGGGACAACACCGTGAGTCAAGAAGT
Found at i:19008613 original size:22 final size:22
Alignment explanation
Indices: 19008585--19008631 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
19008575 TAAGTCAAAA
*
19008585 ATTATGTCCGGAGGTCTTAAAG
1 ATTATGTCCGAAGGTCTTAAAG
*
19008607 ATTATGTCTGAAGGTCTTAAAG
1 ATTATGTCCGAAGGTCTTAAAG
19008629 ATT
1 ATT
19008632 CGGGATAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (22 bp):
ATTATGTCCGAAGGTCTTAAAG
Found at i:19008813 original size:22 final size:22
Alignment explanation
Indices: 19008760--19008813 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
19008750 ACCATAAATC
19008760 GAAATTATGCCTGGAGGTCTTA
1 GAAATTATGCCTGGAGGTCTTA
19008782 -AAGATTATGCCTGGAGGTCTTA
1 GAA-ATTATGCCTGGAGGTCTTA
*
19008804 GAAATCATGC
1 GAAATTATGC
19008814 TCAGAGGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (22 bp):
GAAATTATGCCTGGAGGTCTTA
Found at i:19008890 original size:131 final size:132
Alignment explanation
Indices: 19008725--19009003 Score: 332
Period size: 131 Copynumber: 2.1 Consensus size: 132
19008715 TTGCAAGTTG
* * * * * * *
19008725 AAATTAAAGAATCAATCGAGATAACACCATAAATCGAAATTATGCCTGGAGGTCTTAAAGATTAT
1 AAATTAAAGAATCGATCAAGATAACACCACAAATCAAAATTATGCCCGAAGGTCTTAAAAATTAT
* * * *
19008790 GCCTGGAGGTCTTAGAAATCATGCTCAG-AGGTCTTACAAAATCGA-TCGGGATAACACCGTAAG
66 GCCTGAAGGTCTTAAAAATCATG-TCAGAAAGTCTTACAAAATCGACT-GGGACAACACCGTAAG
*
19008853 -TCA
129 TTAA
* *
19008856 AAATTAAAGAATCGATCAAGATAACA-TAGCAAATCAAAATTATGCCCGAATGTCTTAAAAATTA
1 AAATTAAAGAATCGATCAAGATAACACCA-CAAATCAAAATTATGCCCGAAGGTCTTAAAAATTA
* * * *
19008920 TGTCTGAAGGTCTTAAAAATCATGTCCGAAAGTTTTACAGAATCGACTGGGACAACACCGTAAGT
65 TGCCTGAAGGTCTTAAAAATCATGTCAGAAAGTCTTACAAAATCGACTGGGACAACACCGTAAGT
19008985 TAA
130 TAA
*
19008988 AAAATAAAGAATCGAT
1 AAATTAAAGAATCGAT
19009004 TGGAATAACA
Statistics
Matches: 125, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
130 4 0.03
131 103 0.82
132 18 0.14
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.25
Consensus pattern (132 bp):
AAATTAAAGAATCGATCAAGATAACACCACAAATCAAAATTATGCCCGAAGGTCTTAAAAATTAT
GCCTGAAGGTCTTAAAAATCATGTCAGAAAGTCTTACAAAATCGACTGGGACAACACCGTAAGTT
AA
Found at i:19008918 original size:22 final size:22
Alignment explanation
Indices: 19008891--19008949 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
19008881 ATAGCAAATC
* *
19008891 AAAATTATGCCCGAATGTCTTA
1 AAAATTATGTCCGAAGGTCTTA
*
19008913 AAAATTATGTCTGAAGGTCTTA
1 AAAATTATGTCCGAAGGTCTTA
*
19008935 AAAATCATGTCCGAA
1 AAAATTATGTCCGAA
19008950 AGTTTTACAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (22 bp):
AAAATTATGTCCGAAGGTCTTA
Found at i:19009115 original size:87 final size:88
Alignment explanation
Indices: 19008954--19009118 Score: 206
Period size: 87 Copynumber: 1.9 Consensus size: 88
19008944 TCCGAAAGTT
* ** * *
19008954 TTACAGAATCGACTGGGACAACACCGTAAGTTAAAAAATAAAGAATCGATTGGAATAACACCGTG
1 TTACAAAATCGACCAGGACAACACCGTAAGTTAAAAAATAAAGAATCAATTGGAATAACACCGCG
19009019 AATCAAAATTATGGCTAGAGGTC
66 AATCAAAATTATGGCTAGAGGTC
* * * * * ***
19009042 TTACAAAATCGACCAGGACAATACCGTAAG-TCAAAATTAAAGAATTAATTGGGATAACTTTGCG
1 TTACAAAATCGACCAGGACAACACCGTAAGTTAAAAAATAAAGAATCAATTGGAATAACACCGCG
19009106 AATCAAAATTATG
66 AATCAAAATTATG
19009119 CTTGAAGGTT
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
87 38 0.59
88 26 0.41
ACGTcount: A:0.43, C:0.15, G:0.18, T:0.24
Consensus pattern (88 bp):
TTACAAAATCGACCAGGACAACACCGTAAGTTAAAAAATAAAGAATCAATTGGAATAACACCGCG
AATCAAAATTATGGCTAGAGGTC
Found at i:19009195 original size:219 final size:217
Alignment explanation
Indices: 19008816--19009248 Score: 535
Period size: 219 Copynumber: 2.0 Consensus size: 217
19008806 AATCATGCTC
* * * *
19008816 AGAGGTCTTACAAAATCGATCGGGATAACACCGTAAGTCAAAATTAAAGAATCGATCAAGATAAC
1 AGAGGTCTTACAAAATCGACCAGGACAACACCGTAAGTCAAAATTAAAGAATCAATCAAGATAAC
* * *
19008881 ATAGCAAATCAAAATTATGCCCGAATGTCTTAAAAATTATGTCTGAAGGTCTTAAAAATCATGTC
66 ATAGCAAATCAAAATTATGCCCGAAGGTCTTAAAAATTATGTCTGAAGATCTTAAAAATCATATC
* * * *
19008946 CGAAAGTTTTACAGAATCGACTGGGACAACACCGTAAGTTAAAAAATAAAGAATCGATTGGAATA
131 CGAAAGTCTTACAAAATCAACTAGGACAACA-CGTAAGTTAAAAAATAAAGAATCGATTGG-ATA
**
19009011 ACACCGTGAATCAAAATTATGGCT
194 ACACCACGAATCAAAATTATGGCT
* * ***
19009035 AGAGGTCTTACAAAATCGACCAGGACAATACCGTAAGTCAAAATTAAAGAATTAATTGGGATAAC
1 AGAGGTCTTACAAAATCGACCAGGACAACACCGTAAGTCAAAATTAAAGAATCAATCAAGATAAC
* * * ** * * * *
19009100 TTTGCGAATCAAAATTATGCTTGAAGGTTTTAAAGATTATG-CTCGATGATCTTAGAAATCATAT
66 ATAGCAAATCAAAATTATGCCCGAAGGTCTTAAAAATTATGTCT-GAAGATCTTAAAAATCATAT
* * * *
19009164 TCGGAGGTCTTACAAAATCAACTAGGACAACACGTAAGTTGAAAAATAAAGAATCGATTGGATAA
130 CCGAAAGTCTTACAAAATCAACTAGGACAACACGTAAGTTAAAAAATAAAGAATCGATTGGATAA
* *
19009229 CATCACGAATCGAAATTATG
195 CACCACGAATCAAAATTATG
19009249 CCTGAAAGTC
Statistics
Matches: 180, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
217 20 0.11
218 30 0.17
219 130 0.72
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (217 bp):
AGAGGTCTTACAAAATCGACCAGGACAACACCGTAAGTCAAAATTAAAGAATCAATCAAGATAAC
ATAGCAAATCAAAATTATGCCCGAAGGTCTTAAAAATTATGTCTGAAGATCTTAAAAATCATATC
CGAAAGTCTTACAAAATCAACTAGGACAACACGTAAGTTAAAAAATAAAGAATCGATTGGATAAC
ACCACGAATCAAAATTATGGCT
Found at i:19009291 original size:131 final size:131
Alignment explanation
Indices: 19009036--19009270 Score: 278
Period size: 131 Copynumber: 1.8 Consensus size: 131
19009026 ATTATGGCTA
* * * * *
19009036 GAGGTCTTACAAAATCGACCAGGACAATACCGTAAGTCAAAATTAAAGAATTAATTGGGATAACT
1 GAGGTCTTACAAAATCAACCAGGACAACACCGTAAGTCAAAAATAAAGAATCAATTGGGATAACA
** * * * * * *
19009101 TTGCGAATCAAAATTATGCTTGAAGGTTTTAAAGATTATGCTCGATGATCTTAGAAATCATATTC
66 TCACGAATCAAAATTATGCCTGAAAGTCTTAAAGATCATGCTCGAAGATCTTACAAATCATATTC
19009166 G
131 G
* * *
19009167 GAGGTCTTACAAAATCAACTAGGACAACA-CGTAAGTTGAAAAATAAAGAATCGATT-GGATAAC
1 GAGGTCTTACAAAATCAACCAGGACAACACCGTAAG-TCAAAAATAAAGAATCAATTGGGATAAC
*
19009230 ATCACGAATCGAAATTATGCCTGAAAGTCTTAGAA-ATCATG
65 ATCACGAATCAAAATTATGCCTGAAAGTCTTA-AAGATCATG
19009271 TCTGAAGGTT
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
130 43 0.49
131 44 0.51
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (131 bp):
GAGGTCTTACAAAATCAACCAGGACAACACCGTAAGTCAAAAATAAAGAATCAATTGGGATAACA
TCACGAATCAAAATTATGCCTGAAAGTCTTAAAGATCATGCTCGAAGATCTTACAAATCATATTC
G
Found at i:19009424 original size:22 final size:22
Alignment explanation
Indices: 19009352--19009414 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
19009342 GCGAATCAAA
*
19009352 ATTATGCCTGGAGGCCTTAAAG
1 ATTATGCTTGGAGGCCTTAAAG
19009374 ATTATGCTTGGAGGCCTTAAAG
1 ATTATGCTTGGAGGCCTTAAAG
*
19009396 ATTATGCTTGGAGGTCTTA
1 ATTATGCTTGGAGGCCTTA
19009415 GAAATCATGC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (22 bp):
ATTATGCTTGGAGGCCTTAAAG
Found at i:19009506 original size:36 final size:36
Alignment explanation
Indices: 19009438--19009508 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
19009428 AAGGTCTTAC
* * *
19009438 AGAATCGATCGAGATAACATCGTAAGTTGAAATTAA
1 AGAATCGATCGAGATAACACCGGAAGTCGAAATTAA
*
19009474 AGAATCGATTGAGATAACACCGCGAA-TCGAAATTA
1 AGAATCGATCGAGATAACACCG-GAAGTCGAAATTA
19009509 TGCTCGGAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 28 0.93
37 2 0.07
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.23
Consensus pattern (36 bp):
AGAATCGATCGAGATAACACCGGAAGTCGAAATTAA
Found at i:19009521 original size:153 final size:153
Alignment explanation
Indices: 19009256--19009567 Score: 419
Period size: 153 Copynumber: 2.0 Consensus size: 153
19009246 ATGCCTGAAA
* ** * *
19009256 GTCTTAGAAATCATGTCTGAAGGTTTTACAGAATCAACCGGGATAACACCATAAGTAAAAATTAA
1 GTCTTAGAAATCATGCCCAAAGGTCTTACAGAATCAACCGAGATAACACCATAAGTAAAAATTAA
* * *
19009321 AGAATCGATCGAGATAATACTGCGAATCAAAATTATGCCTGGAGGCCTTAAAGATTATGCTTGGA
66 AGAATCGATCGAGATAACACCGCGAATCAAAATTATGCCTGGAGGCCTTAAAGATTATGCCTGGA
* * **
19009386 GGCCTTAAAGATTATGCTTGGAG
131 GGCCTTAAAAATCATGCTCAGAG
* * * * **
19009409 GTCTTAGAAATCATGCCCAAAGGTCTTACAGAATCGATCGAGATAACATCGTAAGTTGAAATTAA
1 GTCTTAGAAATCATGCCCAAAGGTCTTACAGAATCAACCGAGATAACACCATAAGTAAAAATTAA
* *
19009474 AGAATCGATTGAGATAACACCGCGAATCGAAATTATG-CTCGGAGGCCTTAAAGATTATGCCTGG
66 AGAATCGATCGAGATAACACCGCGAATCAAAATTATGCCT-GGAGGCCTTAAAGATTATGCCTGG
*
19009538 AGGTCTTAAAAATCATGCTCAGAG
130 AGGCCTTAAAAATCATGCTCAGAG
19009562 GTCTTA
1 GTCTTA
19009568 TAAAATCAAT
Statistics
Matches: 137, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
152 2 0.01
153 135 0.99
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (153 bp):
GTCTTAGAAATCATGCCCAAAGGTCTTACAGAATCAACCGAGATAACACCATAAGTAAAAATTAA
AGAATCGATCGAGATAACACCGCGAATCAAAATTATGCCTGGAGGCCTTAAAGATTATGCCTGGA
GGCCTTAAAAATCATGCTCAGAG
Found at i:19009533 original size:22 final size:22
Alignment explanation
Indices: 19009503--19009573 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
19009493 CCGCGAATCG
*
19009503 AAATTATGCTCGGAGGCCTTAA
1 AAATTATGCTCGGAGGTCTTAA
*
19009525 AGATTATGC-CTGGAGGTCTTAA
1 AAATTATGCTC-GGAGGTCTTAA
* *
19009547 AAATCATGCTCAGAGGTCTTATA
1 AAATTATGCTCGGAGGTCTTA-A
19009570 AAAT
1 AAAT
19009574 CAATCGGGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.02
22 34 0.83
23 6 0.15
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (22 bp):
AAATTATGCTCGGAGGTCTTAA
Found at i:19009795 original size:131 final size:131
Alignment explanation
Indices: 19009374--19009845 Score: 459
Period size: 131 Copynumber: 3.6 Consensus size: 131
19009364 GGCCTTAAAG
* * ****
19009374 ATTATGCTTGGAGGCCTTAAAGATTATGCTTGGAGGTCTTAGAAATCATGCCCA-AAGGTCTTAC
1 ATTATGCTCGGAGGCCTTAAAGATTATACCCAAAGGTCTTAGAAATCATG-CCAGAAGGTCTTAC
* * * ** * * *
19009438 AGAATCGATCGAGATAACA-TCGTAAGTTGAAATTAAAGAATCGATTGAGATAACACCGCGAATC
65 AAAATCGATCGGGACAACACTC-TAAGTCAAAAATAAAGAATCAATCGAGATAACACCGCGAATC
*
19009502 GAA
129 AAA
* *** * *
19009505 ATTATGCTCGGAGGCCTTAAAGATTATGCCTGGAGGTCTTAAAAATCATGCTCAG-AGGTCTTAT
1 ATTATGCTCGGAGGCCTTAAAGATTATACCCAAAGGTCTTAGAAATCATGC-CAGAAGGTCTTAC
* * * * * *
19009569 AAAATCAATCGGGACAATACAGC-AAGTCAAAAAATAAAGAATCAATCGAGATAAGATCGTGAAT
65 AAAATCGATCGGGACAACAC-TCTAAGTC-AAAAATAAAGAATCAATCGAGATAACACCGCGAAT
19009633 CAAA
128 CAAA
* * *
19009637 ATTATGCCCAGAGGTCTTAAAGATTATACCCAAAGGTCTTAGAAATCATGTCCAGAA-GTCTTAC
1 ATTATGCTCGGAGGCCTTAAAGATTATACCCAAAGGTCTTAGAAATCATG-CCAGAAGGTCTTAC
* * * *
19009701 AAAATCGATTGGGACAACACTCTAAGTCAAAAATAAAGAATTAATCGGGATAATACCGCGAATCA
65 AAAATCGATCGGGACAACACTCTAAGTCAAAAATAAAGAATCAATCGAGATAACACCGCGAATCA
19009766 AA
130 AA
* * * * * * * *
19009768 ATTATTCTTGGAGGTCTTAAAGATTATACCCAAAGATTTTAGTAATCATGCTAGAAGGTCTTATA
1 ATTATGCTCGGAGGCCTTAAAGATTATACCCAAAGGTCTTAGAAATCATGCCAGAAGGTCTTACA
* *
19009833 GAATCGATTGGGA
66 AAATCGATCGGGA
19009846 TAACGCCGCA
Statistics
Matches: 285, Mismatches: 47, Indels: 18
0.81 0.13 0.05
Matches are distributed among these distances:
130 6 0.02
131 172 0.60
132 104 0.36
133 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (131 bp):
ATTATGCTCGGAGGCCTTAAAGATTATACCCAAAGGTCTTAGAAATCATGCCAGAAGGTCTTACA
AAATCGATCGGGACAACACTCTAAGTCAAAAATAAAGAATCAATCGAGATAACACCGCGAATCAA
A
Found at i:19009884 original size:131 final size:131
Alignment explanation
Indices: 19009407--19009917 Score: 445
Period size: 131 Copynumber: 3.9 Consensus size: 131
19009397 TTATGCTTGG
* * * * * * * *
19009407 AGGTCTTAGAAATCATGCCCA-AAGGTCTTACAGAATCGATCGAGATAACATCGTAAGTTGAAAT
1 AGGTCTTAGAAATCATG-CTAGAAGGTCTTACAAAATCGATCGGGACAACACCGCAAGTTAAAAA
* * * * * * * *
19009471 TAAAGAATCGATTGAGATAACACCGCGAATCGAAATTATGCTCGGAGGCCTTAAAGATTATGCCT
65 TAAAGAATCAATCGAGATAACACCGCGAATCAAAATTATGCCCAGAGGTCTTAAAGATTATACCC
**
19009536 GG
130 AA
* * * * * *
19009538 AGGTCTTAAAAATCATGCTCAG-AGGTCTTATAAAATCAATCGGGACAATACAGCAAGTCAAAAA
1 AGGTCTTAGAAATCATGCT-AGAAGGTCTTACAAAATCGATCGGGACAACACCGCAAGT-TAAAA
* * *
19009602 ATAAAGAATCAATCGAGATAAGATCGTGAATCAAAATTATGCCCAGAGGTCTTAAAGATTATACC
64 ATAAAGAATCAATCGAGATAACACCGCGAATCAAAATTATGCCCAGAGGTCTTAAAGATTATACC
19009667 CAA
129 CAA
* * * *
19009670 AGGTCTTAGAAATCATGTCCAGAA-GTCTTACAAAATCGATTGGGACAACACTC-TAAGTCAAAA
1 AGGTCTTAGAAATCATG-CTAGAAGGTCTTACAAAATCGATCGGGACAACAC-CGCAAGTTAAAA
* * * * ***
19009733 ATAAAGAATTAATCGGGATAATACCGCGAATCAAAATTATTCTTGGAGGTCTTAAAGATTATACC
64 ATAAAGAATCAATCGAGATAACACCGCGAATCAAAATTATGCCCAGAGGTCTTAAAGATTATACC
19009798 CAA
129 CAA
* * * * * * * * * *
19009801 AGATTTTAGTAATCATGCTAGAAGGTCTTATAGAATCGATTGGGATAACGCCGCAAGTTGAAATT
1 AGGTCTTAGAAATCATGCTAGAAGGTCTTACAAAATCGATCGGGACAACACCGCAAGTTAAAAAT
* ** * ** * *
19009866 AAAAAATGGATTGAGATAACATTGCGAATCGAAATTATGCCTAGAGGTCTTA
66 AAAGAATCAATCGAGATAACACCGCGAATCAAAATTATGCCCAGAGGTCTTA
19009918 GAAATCATGA
Statistics
Matches: 303, Mismatches: 69, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
130 7 0.02
131 192 0.63
132 102 0.34
133 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.25
Consensus pattern (131 bp):
AGGTCTTAGAAATCATGCTAGAAGGTCTTACAAAATCGATCGGGACAACACCGCAAGTTAAAAAT
AAAGAATCAATCGAGATAACACCGCGAATCAAAATTATGCCCAGAGGTCTTAAAGATTATACCCA
A
Found at i:19010461 original size:23 final size:25
Alignment explanation
Indices: 19010431--19010489 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 25
19010421 GATGCTAGGA
* * *
19010431 TGCAAATGCAAAT-TTTTTTAC-GG
1 TGCAAATGCAAATATCTTATACAAG
19010454 TGCAAATGCAAATATCTTATACAAG
1 TGCAAATGCAAATATCTTATACAAG
19010479 TGCAAATGCAA
1 TGCAAATGCAA
19010490 GTGATGCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 13 0.42
24 6 0.19
25 12 0.39
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (25 bp):
TGCAAATGCAAATATCTTATACAAG
Found at i:19012068 original size:11 final size:12
Alignment explanation
Indices: 19012047--19012072 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
19012037 TAAAAATGTC
19012047 TTTTTGTTTTTT
1 TTTTTGTTTTTT
19012059 TTTTTGTTTTTT
1 TTTTTGTTTTTT
19012071 TT
1 TT
19012073 ATGCCCCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTTTTGTTTTTT
Found at i:19016906 original size:19 final size:21
Alignment explanation
Indices: 19016874--19016912 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
19016864 GAATTAAAGA
19016874 AAAATCTTTATTTT-TTTTTG
1 AAAATCTTTATTTTCTTTTTG
*
19016894 AAAA-CTTTTTTTTCTTTTT
1 AAAATCTTTATTTTCTTTTT
19016913 TTACTTGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.23, C:0.08, G:0.03, T:0.67
Consensus pattern (21 bp):
AAAATCTTTATTTTCTTTTTG
Found at i:19016912 original size:20 final size:20
Alignment explanation
Indices: 19016874--19016911 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
19016864 GAATTAAAGA
19016874 AAAATCTTTATTTTTTTTTG
1 AAAATCTTTATTTTTTTTTG
19016894 AAAA-CTTT-TTTTTCTTTT
1 AAAATCTTTATTTTT-TTTT
19016912 TTTACTTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (20 bp):
AAAATCTTTATTTTTTTTTG
Found at i:19018709 original size:22 final size:22
Alignment explanation
Indices: 19018684--19018725 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
19018674 AAGGTTTCAA
*
19018684 ATTTTGGGGTTTTG-GATTTTTT
1 ATTTTAGGG-TTTGAGATTTTTT
19018706 ATTTTAGGGTTTGAGATTTT
1 ATTTTAGGGTTTGAGATTTT
19018726 AGAGTTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.14, C:0.00, G:0.26, T:0.60
Consensus pattern (22 bp):
ATTTTAGGGTTTGAGATTTTTT
Found at i:19018768 original size:14 final size:14
Alignment explanation
Indices: 19018751--19018904 Score: 57
Period size: 14 Copynumber: 10.7 Consensus size: 14
19018741 GGGTTAAGGA
19018751 TTTAGGGTTTGA-T
1 TTTAGGGTTTGAGT
*
19018764 GTTTAGGGTTTTAGT
1 -TTTAGGGTTTGAGT
* *
19018779 TTTAGGGTTTTAAGGG
1 TTTAGGG-TTTGA-GT
**
19018795 TTTAGGGCCT-AGT
1 TTTAGGGTTTGAGT
** * *
19018808 TTTAAAGTTTTATT
1 TTTAGGGTTTGAGT
* *
19018822 TTTAGGGTTTAAGG
1 TTTAGGGTTTGAGT
19018836 TTT-GCGGTTGTGA-T
1 TTTAG-GGTT-TGAGT
* *
19018850 TTTAAGGTTTGAAGGG
1 TTTAGGGTTTG-A-GT
19018866 TTTAGGGTTTCGA-T
1 TTTAGGGTTT-GAGT
* *
19018880 CTTAAGGTTTGAGAT
1 TTTAGGGTTTGAG-T
19018895 TTTAGGGTTT
1 TTTAGGGTTT
19018905 AGGGTTTTGA
Statistics
Matches: 101, Mismatches: 26, Indels: 25
0.66 0.17 0.16
Matches are distributed among these distances:
13 12 0.12
14 53 0.52
15 17 0.17
16 18 0.18
17 1 0.01
ACGTcount: A:0.18, C:0.03, G:0.31, T:0.48
Consensus pattern (14 bp):
TTTAGGGTTTGAGT
Found at i:19018929 original size:28 final size:28
Alignment explanation
Indices: 19018886--19018953 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
19018876 CGATCTTAAG
*
19018886 GTTTGAGATTTTAGGGTTTAGGGTTTT-GA
1 GTTT-AGATTTTAGGG-TTAAGGTTTTAGA
* *
19018915 TTTTTGATTTTAGGGTTAAGGTTTTAGA
1 GTTTAGATTTTAGGGTTAAGGTTTTAGA
19018943 GTTTAGATTTT
1 GTTTAGATTTT
19018954 TTAATTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 9 0.27
28 21 0.64
29 3 0.09
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (28 bp):
GTTTAGATTTTAGGGTTAAGGTTTTAGA
Found at i:19019213 original size:3 final size:3
Alignment explanation
Indices: 19019207--19019248 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
19019197 ATAAAAAAAT
*
19019207 TTA TTA TT- CTA TTA TTA TTA TTGGA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT--A TTA TTA TTA TTA TTA TT
19019249 TTTTAAACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 1 0.03
3 30 0.88
5 3 0.09
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:19019226 original size:14 final size:14
Alignment explanation
Indices: 19019207--19019242 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
19019197 ATAAAAAAAT
*
19019207 TTATTATTCTATTA
1 TTATTATTCGATTA
*
19019221 TTATTATTGGATTA
1 TTATTATTCGATTA
19019235 TTATTATT
1 TTATTATT
19019243 ATTATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.64
Consensus pattern (14 bp):
TTATTATTCGATTA
Found at i:19022288 original size:60 final size:59
Alignment explanation
Indices: 19022221--19022423 Score: 329
Period size: 58 Copynumber: 3.5 Consensus size: 59
19022211 TGCTTTTGTA
* *
19022221 CAAGGAAAATTGATACTTTCAACTTTTTTTCGAAAATATTTTTTAGAAAAAACTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAG-AAAAACTTATTTT
*
19022281 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAG-AAAGCTTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTT
* *
19022339 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAGAA-TTATTTT
1 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTT
*
19022397 CAAGAAAAATTGATACTTTCAACTTTT
1 CAAGGAAAATTGATACTTTCAACTTTT
19022424 CTTCAAATTT
Statistics
Matches: 135, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
58 89 0.66
59 2 0.01
60 44 0.33
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.43
Consensus pattern (59 bp):
CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAACTTATTTT
Found at i:19023893 original size:21 final size:21
Alignment explanation
Indices: 19023863--19023902 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
19023853 TCCTTTTACT
*
19023863 TTTCTGGTTTGCTTCTTTCCC
1 TTTCTCGTTTGCTTCTTTCCC
19023884 TTTCTCGTTTGCTTCTTTC
1 TTTCTCGTTTGCTTCTTTC
19023903 TTTCTTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.12, T:0.60
Consensus pattern (21 bp):
TTTCTCGTTTGCTTCTTTCCC
Found at i:19024616 original size:43 final size:43
Alignment explanation
Indices: 19024547--19024777 Score: 238
Period size: 43 Copynumber: 5.4 Consensus size: 43
19024537 TTTCTAAACG
* * *
19024547 ACTTTCGAAAAATAAACAAAGCTCCTCTAATCAAAGGTTCAATA
1 ACTTT-GAAAAATAAATAAAGCTCCTCTAATCAGAGGTTCAACA
**
19024591 ACTTTGAAAAATAAATAAAATTCCTCTAATCAGAGGTTCAACA
1 ACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGTTCAACA
* * *
19024634 ACTTTGGAAAATAAATAAAGCTCATCTAATCAGAGGCTCAACA
1 ACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGTTCAACA
** * * *
19024677 ACTTTGAAAAA-AGAA-ATGGCTCTTCTAAGCAGAGGCTCAACA
1 ACTTTGAAAAATA-AATAAAGCTCCTCTAATCAGAGGTTCAACA
* *
19024719 ACTTTGAAAAAATAAAT--GGCTCCTCTAATCAGAGGTAACAA-A
1 ACTTTG-AAAAATAAATAAAGCTCCTCTAATCAGAGGT-TCAACA
*
19024761 ATTTTGAGAAAATAAAT
1 ACTTTGA-AAAATAAAT
19024778 TGCTCCTTTA
Statistics
Matches: 161, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 61 0.38
43 93 0.58
44 6 0.04
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.25
Consensus pattern (43 bp):
ACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGTTCAACA
Found at i:19024767 original size:42 final size:42
Alignment explanation
Indices: 19024567--19024794 Score: 214
Period size: 42 Copynumber: 5.4 Consensus size: 42
19024557 AATAAACAAA
* * * *
19024567 GCTCCTCTAATCAAAGGTTCAATAACTTTG-AAAAATAAATAAA
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAATAAAT--G
** *
19024610 ATTCCTCTAATCAGAGGTTCAACAACTTTGGAAAATAAATAAA--
1 GCTCCTCTAATCAGAGGCTCAACAACTTT-G-AAA-AAATAAATG
* *
19024653 GCTCATCTAATCAGAGGCTCAACAACTTTGAAAAAAGAAATG
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAATAAATG
* *
19024695 GCTCTTCTAAGCAGAGGCTCAACAACTTTGAAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAATAAATG
* * *
19024737 GCTCCTCTAATCAGAGG-T-AACAAAATTTTGAGAAAATAAATT
1 GCTCCTCTAATCAGAGGCTCAAC--AACTTTGAAAAAATAAATG
* *
19024779 GCTCCTTTAAACAGAG
1 GCTCCTCTAATCAGAG
19024795 CCACCATAAC
Statistics
Matches: 158, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
40 9 0.06
41 4 0.03
42 85 0.54
43 50 0.32
44 1 0.01
46 2 0.01
47 7 0.04
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.26
Consensus pattern (42 bp):
GCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAATAAATG
Found at i:19025444 original size:22 final size:23
Alignment explanation
Indices: 19025408--19025454 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
19025398 AACTTTAGGG
*
19025408 TTTCACACCTCAAAGATTCTCAT
1 TTTCAAACCTCAAAGATTCTCAT
19025431 TTTCAAACC-CAAAGATTCTCAT
1 TTTCAAACCTCAAAGATTCTCAT
19025453 TT
1 TT
19025455 GAGAACTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.36
Consensus pattern (23 bp):
TTTCAAACCTCAAAGATTCTCAT
Found at i:19025465 original size:22 final size:21
Alignment explanation
Indices: 19025416--19025474 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
19025406 GGTTTCACAC
19025416 CTCAAAGATTCTCATTTTCAAA
1 CTCAAAGATTCTCA-TTTCAAA
* *
19025438 CCCAAAGATTCTCATTTGAGAA
1 CTCAAAGATTCTCATTTCA-AA
*
19025460 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
19025475 CAAAGTATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 4 0.12
22 28 0.88
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTCAAA
Found at i:19025939 original size:62 final size:62
Alignment explanation
Indices: 19025855--19025988 Score: 159
Period size: 62 Copynumber: 2.2 Consensus size: 62
19025845 TCAGAATAAG
* * *
19025855 TTTCATCCACCATCACTGGGTCATTACTCATAGGTGTCTCAG-CATTAACCATTCC-AAACAAA
1 TTTCATCCACCATCACTAGGTCA-CACTCATAGGTGTCTCAGTC-CTAACCATTCCAAAACAAA
* *
19025917 TTTCAT-CATCCATCAGTAGGTCACACTCATAGGTTTCTCAGTCCTAACCATTCCAAAACAAA
1 TTTCATCCA-CCATCACTAGGTCACACTCATAGGTGTCTCAGTCCTAACCATTCCAAAACAAA
19025979 CTTT-ATCCAC
1 -TTTCATCCAC
19025989 TGATCCATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
61 28 0.45
62 29 0.47
63 5 0.08
ACGTcount: A:0.31, C:0.30, G:0.10, T:0.30
Consensus pattern (62 bp):
TTTCATCCACCATCACTAGGTCACACTCATAGGTGTCTCAGTCCTAACCATTCCAAAACAAA
Found at i:19026765 original size:20 final size:20
Alignment explanation
Indices: 19026742--19026798 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
19026732 CCATTTCCCT
19026742 TTTTTCTTTCTTTTTTCATC
1 TTTTTCTTTCTTTTTTCATC
*
19026762 TTTTATC-CTCTTTTTT--TC
1 TTTT-TCTTTCTTTTTTCATC
* *
19026780 TTTTT-TTTCATCTTTCATC
1 TTTTTCTTTCTTTTTTCATC
19026799 CATTGTTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 9
0.69 0.10 0.21
Matches are distributed among these distances:
17 7 0.24
18 6 0.21
19 2 0.07
20 12 0.41
21 2 0.07
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTTCTTTCTTTTTTCATC
Found at i:19026788 original size:30 final size:32
Alignment explanation
Indices: 19026741--19026799 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 32
19026731 TCCATTTCCC
*
19026741 TTTTTTCTTTCTTTTTTCATCTTTTATCCTCT
1 TTTTTTCTTTCTTTTTTCATCTTTCATCCTCT
19026773 TTTTTTC-TT-TTTTTTCATCTTTCATCC
1 TTTTTTCTTTCTTTTTTCATCTTTCATCC
19026800 ATTGTTGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 17 0.65
31 2 0.08
32 7 0.27
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.71
Consensus pattern (32 bp):
TTTTTTCTTTCTTTTTTCATCTTTCATCCTCT
Found at i:19030908 original size:117 final size:115
Alignment explanation
Indices: 19030777--19031105 Score: 464
Period size: 119 Copynumber: 2.8 Consensus size: 115
19030767 TGCTTTTGTG
* *
19030777 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTAG-AAACTTTAATTTCGAAGAA
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTAGAAAACTTTATTTTC-AAGAA
19030841 AATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAAACTTATTTT
65 AATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAG-AAAAA-TTATTTT
19030894 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAGC-TTATTTTCAAGG
1 TAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTAGAAAA-CTTTATTTTCAA-G
* * * * *
19030958 AAAATTGATACTTTTAACTTTTTCTTAAAAATATTTTTTTGAAGAATTATTTT
63 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAATTATTTT
* * * *
19031011 TAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTTAGAAAAATTTGTTTTCAAG
1 TAAGGAAAATTGATACTTTCAAC-TTTTCCTCAAAATA--TTTTTTAGAAAACTTTATTTTCAAG
19031076 AAAATTGATACTTTCAACTTTTCCTCAAAA
63 AAAATTGATACTTTCAACTTTTCCTCAAAA
19031106 TTTTTTATTT
Statistics
Matches: 190, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
117 66 0.35
118 54 0.28
119 69 0.36
120 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.43
Consensus pattern (115 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTAGAAAACTTTATTTTCAAGAAA
ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAATTATTTT
Found at i:19030925 original size:60 final size:59
Alignment explanation
Indices: 19030777--19031105 Score: 436
Period size: 60 Copynumber: 5.6 Consensus size: 59
19030767 TGCTTTTGTG
* *
19030777 TAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTAG--AAACTTTAATTTC
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAAC-TT-ATTTT
*
19030835 GAA-GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAAACTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAG-AAAAACTTATTTT
*
19030894 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAGCTTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAACTTATTTT
* * * * * *
19030953 CAAGGAAAATTGATACTTTTAACTTTTTCTTAAAAATATTTTTTTGAAGAA-TTATTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAACTTATTTT
* * * *
19031011 TAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTTAGAAAAATTTGTTTT
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTAGAAAAACTTATTTT
*
19031072 CAA-GAAAATTGATACTTTCAACTTTTCCTCAAAA
1 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAA
19031106 TTTTTTATTT
Statistics
Matches: 243, Mismatches: 20, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
57 26 0.11
58 59 0.24
59 62 0.26
60 84 0.35
61 12 0.05
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.43
Consensus pattern (59 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAACTTATTTT
Found at i:19031081 original size:177 final size:176
Alignment explanation
Indices: 19030782--19031105 Score: 467
Period size: 177 Copynumber: 1.8 Consensus size: 176
19030772 TTGTGTAAGA
* *
19030782 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTAGAAACTTTAATTTCGAAGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTAGAAACATTAATTTCGAAGAAAATTGA
*
19030847 TACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAAACTTATTTTTAAGGAAAATTGATACTT
66 TACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAAACTTATTTTCAAGGAAAATTGATACTT
19030912 TCAACTTTTCCTCAAAAATATTTTTTAGAAAAGCTTATTTTCAAGG
131 TCAACTTTTCCTCAAAAATATTTTTTAGAAAAGCTTATTTTCAAGG
* * * **
19030958 AAAATTGATACTTTTAACTTTTTCTTAAAAATATTTTTTTGAAGA-ATT-ATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAAC-TTTTCCTAAAAATATTTTTTAGAA-ACATTAATTTCGAA-GAAAAT
* * * *
19031021 TGATACTTTCAACTTTTTCTTAAAAATATTTTTTTTAG-AAAAATTTGTTTTCAA-GAAAATTGA
63 TGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTAGAAAAAACTTATTTTCAAGGAAAATTGA
19031084 TACTTTCAACTTTTCCTCAAAA
126 TACTTTCAACTTTTCCTCAAAA
19031106 TTTTTTATTT
Statistics
Matches: 131, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
176 23 0.18
177 86 0.66
178 14 0.11
179 8 0.06
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (176 bp):
AAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTAGAAACATTAATTTCGAAGAAAATTGA
TACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAAACTTATTTTCAAGGAAAATTGATACTT
TCAACTTTTCCTCAAAAATATTTTTTAGAAAAGCTTATTTTCAAGG
Found at i:19031106 original size:117 final size:117
Alignment explanation
Indices: 19030777--19031111 Score: 446
Period size: 117 Copynumber: 2.9 Consensus size: 117
19030767 TGCTTTTGTG
* * * * *
19030777 TAAGAAAAATTGATACTTTCAAC-TTTTCCTCAAAATATTTTTTAG-AAACTTTAATTTCGAAGA
1 TAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTAGAAAAATTTATTTTC-AAGA
19030840 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAAACTTATTTT
65 AAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTAGAAAAAACTTATTTT
* * **
19030894 TAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAGCTTATTTTCAAGGA
1 TAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTAGAAAAATTTATTTTCAA-GA
* * * * *
19030959 AAATTGATACTTTTAACTTTTTCTTAAAAATATTTTTTTG-AAGAA-TTATTTT
65 AAATTGATACTTTCAAC-TTTTCCTCAAAATATTTTTTAGAAAAAACTTATTTT
*
19031011 TAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTTAGAAAAATTTGTTTTCAAG
1 TAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATA--TTTTTTAGAAAAATTTATTTTCAAG
19031076 AAAATTGATACTTTCAACTTTTCCTCAAAAT-TTTTT
64 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTT
19031112 ATTTTTTTAT
Statistics
Matches: 191, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
116 5 0.03
117 76 0.40
118 42 0.22
119 62 0.32
120 6 0.03
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (117 bp):
TAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTAGAAAAATTTATTTTCAAGAA
AATTGATACTTTCAACTTTTCCTCAAAATATTTTTTAGAAAAAACTTATTTT
Found at i:19031134 original size:16 final size:16
Alignment explanation
Indices: 19031105--19031143 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
19031095 TTTCCTCAAA
*
19031105 ATTTTT-TATTTTTTT
1 ATTTTTATATATTTTT
19031120 ATTTTTATATATTTTT
1 ATTTTTATATATTTTT
*
19031136 AATTTTAT
1 ATTTTTAT
19031144 TCATGCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTTATATATTTTT
Found at i:19039297 original size:45 final size:46
Alignment explanation
Indices: 19039204--19039302 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 46
19039194 TTAAAAATAA
***
19039204 AAAAAAAAAGCTTAAATTGAAAACCCGTAAAGGGTGGTTTGAGTTT
1 AAAAAAAAAGCTTAAATTGAAAACCCGTAAAGGACAGTTTGAGTTT
* *
19039250 AAAAAAAAA-TTTCAAATTGAAAACCTGTAAAGGACAGTTTGAG-TT
1 AAAAAAAAAGCTT-AAATTGAAAACCCGTAAAGGACAGTTTGAGTTT
19039295 AAAAAAAA
1 AAAAAAAA
19039303 CAAAAAAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
45 12 0.26
46 35 0.74
ACGTcount: A:0.51, C:0.08, G:0.17, T:0.24
Consensus pattern (46 bp):
AAAAAAAAAGCTTAAATTGAAAACCCGTAAAGGACAGTTTGAGTTT
Found at i:19040407 original size:85 final size:85
Alignment explanation
Indices: 19040307--19040539 Score: 313
Period size: 85 Copynumber: 2.7 Consensus size: 85
19040297 TTTTCGACTT
*
19040307 AGTCCAAGTTATTCATTTCAAACTTTGGTTCAGTCTAGGTCATTTTATTTTAGATTTTGACTTCT
1 AGTCCAAGTTATTCATTTCAAACTTTGGTTCAGTCTAGGTCATTTTGTTTTAGATTTTGACTTCT
19040372 ATCAAATCCTTCTTTGGCTC
66 ATCAAATCCTTCTTTGGCTC
* * * *
19040392 AGTCCAAGTTATTCATTTCAAACTTTGGTTTAGTCCAAGTCATTTTGTTTTAGATTTTGACTTTT
1 AGTCCAAGTTATTCATTTCAAACTTTGGTTCAGTCTAGGTCATTTTGTTTTAGATTTTGACTTCT
* * * *
19040457 GTCATATCGTTCTTTGGCTT
66 ATCAAATCCTTCTTTGGCTC
* * ** * * * *
19040477 AATCTAAGTTATTTGTTTTAGACTTTAGTTCAGTCTAGGTCATTTTGTTTTGGATTTTGACTT
1 AGTCCAAGTTATTCATTTCAAACTTTGGTTCAGTCTAGGTCATTTTGTTTTAGATTTTGACTT
19040540 ATGTGACTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 128 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (85 bp):
AGTCCAAGTTATTCATTTCAAACTTTGGTTCAGTCTAGGTCATTTTGTTTTAGATTTTGACTTCT
ATCAAATCCTTCTTTGGCTC
Found at i:19040743 original size:113 final size:113
Alignment explanation
Indices: 19040543--19040819 Score: 391
Period size: 113 Copynumber: 2.5 Consensus size: 113
19040533 TTGACTTATG
*
19040543 TGACTTATGTCAGATCCTTCTTCGATTTAGTCTAAGCTATTCATTTCAGACTTAGGTTCTGTCTA
1 TGACTTATGTCAGATCCTTCTTCGATTTAGTCTAAGCTATTCATTTCAAACTTAGGTTCTGTCTA
*
19040608 GGTTATTTTGTTTTGGGATTTGACTTATGTCAGTCCTTCTTCGAATTT
66 GGTTATTTTGTTTTGGGATTTGACTTATGTCAGTCCTTCTTCAAATTT
* *
19040656 TGACTTATGTCAGATCCTTCTTTGGTTTAGTCTAAGCTATTCATTTCAAACTTAGGTTCTGTCTA
1 TGACTTATGTCAGATCCTTCTTCGATTTAGTCTAAGCTATTCATTTCAAACTTAGGTTCTGTCTA
* *
19040721 GGTTATTTTGTTTT-GGATTTTGACTTATGTCGGTCCTTTTTCAAA-TT
66 GGTTATTTTGTTTTGGGA-TTTGACTTATGTCAGTCCTTCTTCAAATTT
* * * * * **
19040768 AGTCTAAAT-TCA-ATCCTTCTTCAACTTAGTCTAAATTATTCATTTCAAACTT
1 TGACT-TATGTCAGATCCTTCTTCGATTTAGTCTAAGCTATTCATTTCAAACTT
19040820 TGATTCAATT
Statistics
Matches: 147, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
111 34 0.23
112 11 0.07
113 102 0.69
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (113 bp):
TGACTTATGTCAGATCCTTCTTCGATTTAGTCTAAGCTATTCATTTCAAACTTAGGTTCTGTCTA
GGTTATTTTGTTTTGGGATTTGACTTATGTCAGTCCTTCTTCAAATTT
Found at i:19040958 original size:85 final size:81
Alignment explanation
Indices: 19040809--19041066 Score: 257
Period size: 81 Copynumber: 3.1 Consensus size: 81
19040799 TAAATTATTC
* * * * * * * *
19040809 ATTTCAAACTTTGATTCAATTTAGATCATTTTATTTTAGATTTTAACTTATGTCAAATCCTTTTT
1 ATTTCAGACTTTGATTCAGTCTAGGTCATTTTGTTTTAGATTTTAACCTATGCCAAATCTTTTTT
*
19040874 CGGCTT-AGTCTAAGTCACTT
66 CGG-TTCAGTCCAAG----TT
* * * **
19040894 ATTTTAGACTTTGATTCAGTCCAGGTCATTTTGTTTTAGATTTTGACCTATGCCGGATCTTTTTT
1 ATTTCAGACTTTGATTCAGTCTAGGTCATTTTGTTTTAGATTTTAACCTATGCCAAATCTTTTTT
*
19040959 TGGTTCAGTCCAAGTT
66 CGGTTCAGTCCAAGTT
* * * *
19040975 ATTTCAGACTTCGATTTAGTCTAGGTCATTTTGTTTTGGATTTCAACCTATGCCAAATCTTTTTT
1 ATTTCAGACTTTGATTCAGTCTAGGTCATTTTGTTTTAGATTTTAACCTATGCCAAATCTTTTTT
***
19041040 TAATTCAGTCCAAGTT
66 CGGTTCAGTCCAAGTT
*
19041056 ATTTCAAACTT
1 ATTTCAGACTT
19041067 CGGCTCTATC
Statistics
Matches: 145, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
81 82 0.57
84 2 0.01
85 61 0.42
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.47
Consensus pattern (81 bp):
ATTTCAGACTTTGATTCAGTCTAGGTCATTTTGTTTTAGATTTTAACCTATGCCAAATCTTTTTT
CGGTTCAGTCCAAGTT
Found at i:19042327 original size:60 final size:59
Alignment explanation
Indices: 19042253--19043047 Score: 952
Period size: 60 Copynumber: 13.5 Consensus size: 59
19042243 AAACGTTTCT
* *
19042253 AGGAAAATTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTTAAAAAAAGTATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAA-TTTCAAAAAAGTATTTTTG
* *
19042313 CA-AAAAAGTTGAAAGTATTAA-TTTTCTTTGAAAATAAAAATTTCAAAAAAGATATTTTTG
1 -AGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAAAATTTCAAAAAAG-TATTTTTG
* * * * * *
19042373 AGAAAAAGTTGAAAGTGTCAGTATTACTTGAAAATAAAAATATC-AAAAAGCTA-TTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAG-TATTTTTG
*
19042431 AGGAAAAGTTGAAAGTATTAA-TTTTCTTTGAAAATAAAAATTTCAAAAAAGATATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAAAATTTCAAAAAAG-TATTTTTG
* * * * *
19042491 AGAAAAAGTTGAAAGTATCAACTTTCCTCGAAAATAAAAATTTCAAAAAAAGGTATTTTGG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTC-AAAAAA-GTATTTTTG
* **
19042552 AGGAAAAGTTGAAAATATCAA-TTTTCTTTG---A-AAAAATTTTGAAAAAGTATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAAAATTTCAAAAAAGTATTTTTG
* *
19042607 AGGAAAAGTTGAAACTATCAA-TTTTCTTGAAAATAAAAATTTCAAAAAAGCATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAGTATTTTTG
* * * *
19042665 AGGAAAAGTTGAAAATATTAATTTTTCTTGAAAATAAAAATTTCAAGAAAGCATTTTTGG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAGTATTTTT-G
* * * *
19042725 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTCAAAAAAGCATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAGTATTTTTG
* * * **
19042784 AAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAA-AAAATTTTTTAAAAAGTATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAGTATTTTTG
* *
19042842 AGAAAAAGTTAAAAGTATCAA-TTTTCTTGAAAATAAAAATTTCAAAAAAGGTA-TTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAA-GTATTTTTG
* * * *
19042900 AGGAAAAGTTGAAAATATTAATTTTTCTTGAAAATAAAAATTTCAAGAAAGCATTTTTGG
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAGTATTTTT-G
* * * ** * *
19042960 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTTGAAAAAGCATTTTTA
1 AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAGTATTTTTG
19043019 AGGAAAAGTTGAAAGTATCAATTTTTCTT
1 AGGAAAAGTTGAAAGTATCAATTTTTCTT
19043048 ATATAAAGGC
Statistics
Matches: 636, Mismatches: 76, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
54 3 0.00
55 33 0.05
56 5 0.01
57 23 0.04
58 153 0.24
59 159 0.25
60 217 0.34
61 42 0.07
62 1 0.00
ACGTcount: A:0.46, C:0.06, G:0.13, T:0.34
Consensus pattern (59 bp):
AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTCAAAAAAGTATTTTTG
Found at i:19042901 original size:235 final size:234
Alignment explanation
Indices: 19042253--19043043 Score: 1121
Period size: 235 Copynumber: 3.4 Consensus size: 234
19042243 AAACGTTTCT
* * * * * *
19042253 AGGAAAATTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTTAAAAAAAGTATTTTTGCAA-A
1 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAA-TTTCAAAAAAGCATTTTTG-AAGA
* *
19042317 AAAGTTGAAAGTATTAATTTTCTTTGAAAATAAAAATTTCAAAAAAGATATTTTTGAGAAAAAGT
64 AAAGTTGAAAGTATCAATTTTCTTTG-AAA-AAAAATTTTAAAAAAG-TATTTTTGAGAAAAAGT
* * * * * *
19042382 TGAAAGTGTCAGTATTACTTGAAAATAAAAATATC-AAAAAGCTATTTTGAGGAAAAGTTGAAAG
126 TGAAAGTATCAAT-TTTCTTGAAAATAAAAATTTCAAAAAAGGTATTTTGAGGAAAAGTTGAAAA
* *
19042446 TATTAA-TTTTCTTTGAAAATAAAAATTTCAAAAAAG-ATATTTTTG
190 TATTAATTTTTC-TTGAAAATAAAAATTTCAAGAAAGCAT-TTTTGG
* * * * * *
19042491 AGAAAAAGTTGAAAGTATCAACTTTCCTCGAAAATAAAAATTTCAAAAAAAGGTATTTTGGAGGA
1 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTC-AAAAAA-GCATTTTTGAAGA
* * *
19042556 AAAGTTGAAAATATCAATTTTCTTTG--AAAAAATTTTGAAAAAGTATTTTTGAGGAAAAGTTGA
64 AAAGTTGAAAGTATCAATTTTCTTTGAAAAAAAATTTTAAAAAAGTATTTTTGAGAAAAAGTTGA
* *
19042619 AACTATCAATTTTCTTGAAAATAAAAATTTCAAAAAA-GCATTTTTGAGGAAAAGTTGAAAATAT
129 AAGTATCAATTTTCTTGAAAATAAAAATTTCAAAAAAGGTA-TTTTGAGGAAAAGTTGAAAATAT
19042683 TAATTTTTCTTGAAAATAAAAATTTCAAGAAAGCATTTTTGG
193 TAATTTTTCTTGAAAATAAAAATTTCAAGAAAGCATTTTTGG
19042725 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTCAAAAAAGCATTTTTGAAGAAA
1 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTCAAAAAAGCATTTTTGAAGAAA
* * *
19042790 AGTTGAAAGTATCAATTTTCCTTGAAAAAAAATTTTTTAAAAAGTATTTTTGAGAAAAAGTTAAA
66 AGTTGAAAGTATCAATTTTCTTTGAAAAAAAA-TTTTAAAAAAGTATTTTTGAGAAAAAGTTGAA
19042855 AGTATCAATTTTCTTGAAAATAAAAATTTCAAAAAAGGTATTTTGAGGAAAAGTTGAAAATATTA
130 AGTATCAATTTTCTTGAAAATAAAAATTTCAAAAAAGGTATTTTGAGGAAAAGTTGAAAATATTA
19042920 ATTTTTCTTGAAAATAAAAATTTCAAGAAAGCATTTTTGG
195 ATTTTTCTTGAAAATAAAAATTTCAAGAAAGCATTTTTGG
**
19042960 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTTGAAAAAGCATTTTT-AAGGAA
1 AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTCAAAAAAGCATTTTTGAA-GAA
19043024 AAGTTGAAAGTATCAATTTT
65 AAGTTGAAAGTATCAATTTT
19043044 TCTTATATAA
Statistics
Matches: 503, Mismatches: 38, Indels: 27
0.89 0.07 0.05
Matches are distributed among these distances:
232 34 0.07
233 26 0.05
234 133 0.26
235 229 0.46
236 3 0.01
237 3 0.01
238 42 0.08
239 33 0.07
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.34
Consensus pattern (234 bp):
AGGAAAAGTTGAAAGAATCAACTTTCCTTGAAAATAAAAATTTCAAAAAAGCATTTTTGAAGAAA
AGTTGAAAGTATCAATTTTCTTTGAAAAAAAATTTTAAAAAAGTATTTTTGAGAAAAAGTTGAAA
GTATCAATTTTCTTGAAAATAAAAATTTCAAAAAAGGTATTTTGAGGAAAAGTTGAAAATATTAA
TTTTTCTTGAAAATAAAAATTTCAAGAAAGCATTTTTGG
Found at i:19044683 original size:19 final size:19
Alignment explanation
Indices: 19044661--19044698 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19044651 CACTTTTTGC
19044661 ATAAGTATAAAATTTTCAA
1 ATAAGTATAAAATTTTCAA
*
19044680 ATAAGTATAAATTTTTCAA
1 ATAAGTATAAAATTTTCAA
19044699 CAATTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.39
Consensus pattern (19 bp):
ATAAGTATAAAATTTTCAA
Found at i:19045293 original size:27 final size:28
Alignment explanation
Indices: 19045245--19045299 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
19045235 AGTTTTTTAC
*
19045245 TAAAAATCATTAAATAAAAAA-TAAAAA
1 TAAAAATCAATAAATAAAAAATTAAAAA
*
19045272 TAAAAAT-AATAAATTAATAAATTAAAAA
1 TAAAAATCAATAAA-TAAAAAATTAAAAA
19045300 GTCTTGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.21
27 13 0.54
28 6 0.25
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (28 bp):
TAAAAATCAATAAATAAAAAATTAAAAA
Found at i:19045297 original size:22 final size:19
Alignment explanation
Indices: 19045256--19045299 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
19045246 AAAAATCATT
19045256 AAATAAAAAATAAAAATAA
1 AAATAAAAAATAAAAATAA
*
19045275 AAATAATAAATTAATAAATTAA
1 AAATAA-AAAATAA-AAA-TAA
19045297 AAA
1 AAA
19045300 GTCTTGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 6 0.29
21 3 0.14
22 6 0.29
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (19 bp):
AAATAAAAAATAAAAATAA
Found at i:19047337 original size:56 final size:56
Alignment explanation
Indices: 19047273--19047488 Score: 186
Period size: 57 Copynumber: 3.9 Consensus size: 56
19047263 TGTAATCTAC
* * * *
19047273 CAGATCAATGCAAACAAATAAAAACATAAATC-TCATATTAGATTAAAATAATTTAA
1 CAGATCAATGCAAACAAATAAAAAAATAAA-CACCATATTAAATTAAAATAATATAA
* * *
19047329 CAGATCAATGTAAACAAATAAAAAAAATAAACACCATATTAAATTAAAATACTATGA
1 CAGATCAATGCAAACAAAT-AAAAAAATAAACACCATATTAAATTAAAATAATATAA
* * * * **** *
19047386 TAGATTAATGCAAACATAT-AAAAAACAAGGTGC-TATTAAATTAAAATAATCTAA
1 CAGATCAATGCAAACAAATAAAAAAATAAACACCATATTAAATTAAAATAATATAA
* ** * * * *
19047440 TAGATCAATATAAACAAACAAAAGAATAAAGAGCATATTAAATTAAAAT
1 CAGATCAATGCAAACAAATAAAAAAATAAACACCATATTAAATTAAAAT
19047489 TTTTTTATAA
Statistics
Matches: 128, Mismatches: 28, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
54 32 0.25
55 19 0.15
56 33 0.26
57 44 0.34
ACGTcount: A:0.57, C:0.11, G:0.07, T:0.25
Consensus pattern (56 bp):
CAGATCAATGCAAACAAATAAAAAAATAAACACCATATTAAATTAAAATAATATAA
Found at i:19047455 original size:54 final size:56
Alignment explanation
Indices: 19047306--19047488 Score: 154
Period size: 54 Copynumber: 3.3 Consensus size: 56
19047296 ACATAAATCT
* * * ** * * * * *
19047306 CATATTAGATTAAAATAATTTAACAGATCAATGTAAACAAATAAAAAAAATAAACAC
1 CATATTAAATTAAAATAATATAATAGATCAATACAAACAAA-CAAAAGAACAAAGAG
* * * * * * * *
19047363 CATATTAAATTAAAATACTATGATAGATTAATGCAAACATATAAAA-AACAAGGTG
1 CATATTAAATTAAAATAATATAATAGATCAATACAAACAAACAAAAGAACAAAGAG
* * *
19047418 C-TATTAAATTAAAATAATCTAATAGATCAATATAAACAAACAAAAGAATAAAGAG
1 CATATTAAATTAAAATAATATAATAGATCAATACAAACAAACAAAAGAACAAAGAG
19047473 CATATTAAATTAAAAT
1 CATATTAAATTAAAAT
19047489 TTTTTTATAA
Statistics
Matches: 99, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
54 36 0.36
55 12 0.12
56 18 0.18
57 33 0.33
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.26
Consensus pattern (56 bp):
CATATTAAATTAAAATAATATAATAGATCAATACAAACAAACAAAAGAACAAAGAG
Found at i:19049291 original size:32 final size:32
Alignment explanation
Indices: 19049216--19049292 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
19049206 ACCTTAGATT
*
19049216 ATATATGATAATTTATATATTTATATTATATA
1 ATATATGAAAATTTATATATTTATATTATATA
* * * *
19049248 AAATATTAAAATTTATATATTTATATTATTTT
1 ATATATGAAAATTTATATATTTATATTATATA
*
19049280 TTATATGAAAATT
1 ATATATGAAAATT
19049293 ATGTGTCGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (32 bp):
ATATATGAAAATTTATATATTTATATTATATA
Found at i:19050883 original size:84 final size:84
Alignment explanation
Indices: 19050724--19050887 Score: 195
Period size: 84 Copynumber: 2.0 Consensus size: 84
19050714 AATTTTGTCA
* * *** *
19050724 AATACGCTATTCTGATTTAATGCATGGAAACTTCATTAAGCACCAATATGTGTTGAGAACAAGAA
1 AATACGCTATTCTGATTTAATGCATCGAAACTTCATTAAGCACCAATAAGTGCCAAGAACAAAAA
*
19050789 ATCTCGTCAATTTTCTATC
66 ATCTCATCAATTTTCTATC
* * ** *
19050808 AATATGCTATTCTGCTTTAAT-CTATCGAAACTTCATTAAGTGCGAATAAGTGCCAAGAACAAAA
1 AATACGCTATTCTGATTTAATGC-ATCGAAACTTCATTAAGCACCAATAAGTGCCAAGAACAAAA
*
19050872 AATGTCATCAATTTTC
65 AATCTCATCAATTTTC
19050888 CATGTGAGGA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
83 1 0.02
84 65 0.98
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (84 bp):
AATACGCTATTCTGATTTAATGCATCGAAACTTCATTAAGCACCAATAAGTGCCAAGAACAAAAA
ATCTCATCAATTTTCTATC
Found at i:19055145 original size:15 final size:15
Alignment explanation
Indices: 19055121--19055165 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
19055111 TAAAATGATC
19055121 TTTT-AATATTTTAA
1 TTTTAAATATTTTAA
*
19055135 TTTTAAATATTTTGA
1 TTTTAAATATTTTAA
*
19055150 TTCTAAATATTATTAA
1 TTTTAAATATT-TTAA
19055166 AAATAAATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 4 0.15
15 19 0.73
16 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (15 bp):
TTTTAAATATTTTAA
Found at i:19055626 original size:25 final size:25
Alignment explanation
Indices: 19055597--19055660 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
19055587 AGAATGTTTT
*
19055597 AATATTTAAATAATAAATAAATTTC
1 AATATTTTAATAATAAATAAATTTC
* *
19055622 AATATTTTAATAATAAATAATTTTT
1 AATATTTTAATAATAAATAAATTTC
19055647 AATATTTTAATAAT
1 AATATTTTAATAAT
19055661 TATATTAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
AATATTTTAATAATAAATAAATTTC
Found at i:19064317 original size:24 final size:25
Alignment explanation
Indices: 19064289--19064365 Score: 97
Period size: 24 Copynumber: 3.2 Consensus size: 25
19064279 ATACATAAAT
*
19064289 TATC-ATGCAATAAATATAAAATCA
1 TATCAATGCAATAAATACAAAATCA
*
19064313 TATCAATGC-ATTAATACAAAATCA
1 TATCAATGCAATAAATACAAAATCA
* *
19064337 TA-CGATGCAATAAATACACAATCA
1 TATCAATGCAATAAATACAAAATCA
19064361 TATCA
1 TATCA
19064366 TATAATAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 5 0.11
24 34 0.77
25 5 0.11
ACGTcount: A:0.51, C:0.17, G:0.05, T:0.27
Consensus pattern (25 bp):
TATCAATGCAATAAATACAAAATCA
Found at i:19064372 original size:24 final size:24
Alignment explanation
Indices: 19064297--19064381 Score: 68
Period size: 24 Copynumber: 3.6 Consensus size: 24
19064287 ATTATCATGC
*
19064297 AATAAATATAAAATCATATCA-AT
1 AATAAATACAAAATCATATCATAT
* * **
19064320 GCATTAATACAAAATCATA-CGATGC
1 -AATAAATACAAAATCATATC-ATAT
*
19064345 AATAAATACACAATCATATCATAT
1 AATAAATACAAAATCATATCATAT
*
19064369 AAT-AATATAAAAT
1 AATAAATACAAAAT
19064382 ATTATGTAAA
Statistics
Matches: 46, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
23 9 0.20
24 36 0.78
25 1 0.02
ACGTcount: A:0.55, C:0.13, G:0.04, T:0.28
Consensus pattern (24 bp):
AATAAATACAAAATCATATCATAT
Found at i:19064383 original size:20 final size:20
Alignment explanation
Indices: 19064360--19064479 Score: 111
Period size: 20 Copynumber: 6.0 Consensus size: 20
19064350 ATACACAATC
*
19064360 ATATCATATAATAATATAAA
1 ATATCATACAATAATATAAA
* *
19064380 ATATTATGTA-AAT-ATATTAA
1 ATATCA--TACAATAATATAAA
* *
19064400 TTATCATACAATAATATATA
1 ATATCATACAATAATATAAA
19064420 ATATCATACAATAATATAAA
1 ATATCATACAATAATATAAA
*
19064440 ATATCATACAA-ATATATTAA
1 ATATCATACAATA-ATATAAA
* * *
19064460 TTACCATGCAATAATATAAA
1 ATATCATACAATAATATAAA
19064480 TAATCATGCA
Statistics
Matches: 81, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
18 2 0.02
19 4 0.05
20 69 0.85
21 4 0.05
22 2 0.02
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (20 bp):
ATATCATACAATAATATAAA
Found at i:19064426 original size:60 final size:59
Alignment explanation
Indices: 19064360--19064486 Score: 182
Period size: 60 Copynumber: 2.1 Consensus size: 59
19064350 ATACACAATC
* * ** *
19064360 ATATCATATAATAATATAAAATATTATGTAAATATATTAATTATCATACAATAATATATA
1 ATATCATACAATAATATAAAATATCATACAAATATATTAATTACCATACAATAATATA-A
*
19064420 ATATCATACAATAATATAAAATATCATACAAATATATTAATTACCATGCAATAATATAA
1 ATATCATACAATAATATAAAATATCATACAAATATATTAATTACCATACAATAATATAA
19064479 ATAATCAT
1 AT-ATCAT
19064487 GCACATAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 3 0.05
60 57 0.95
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.36
Consensus pattern (59 bp):
ATATCATACAATAATATAAAATATCATACAAATATATTAATTACCATACAATAATATAA
Found at i:19064432 original size:10 final size:10
Alignment explanation
Indices: 19064401--19064450 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
19064391 ATATATTAAT
19064401 TATCATACAA
1 TATCATACAA
*
19064411 TAAT-ATATAA
1 T-ATCATACAA
19064421 TATCATACAA
1 TATCATACAA
*
19064431 TAAT-ATAAAA
1 T-ATCATACAA
19064441 TATCATACAA
1 TATCATACAA
19064451 ATATATTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
9 4 0.12
10 24 0.75
11 4 0.12
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (10 bp):
TATCATACAA
Found at i:19064487 original size:20 final size:20
Alignment explanation
Indices: 19064402--19064572 Score: 106
Period size: 20 Copynumber: 8.6 Consensus size: 20
19064392 TATATTAATT
*
19064402 ATCATACAATAATATATAAT-
1 ATCATGCAATAATATA-AATA
*
19064422 ATCATACAATAATATAAA-A
1 ATCATGCAATAATATAAATA
* * *
19064441 TATCATACAA-ATATATTAATT
1 -ATCATGCAATA-ATATAAATA
*
19064462 ACCATGCAATAATATAAATA
1 ATCATGCAATAATATAAATA
*
19064482 ATCATGCACATAA-ATAATTA
1 ATCATGCA-ATAATATAAATA
* *
19064502 GTCATGCAAATAATA-ATAT-
1 ATCATGC-AATAATATAAATA
*
19064521 ATCATGCAATTAA-ATATATA
1 ATCATGCAA-TAATATAAATA
* *
19064541 ATCATGTAAATAA-ATATATA
1 ATCATG-CAATAATATAAATA
*
19064561 ATCATGTAATAA
1 ATCATGCAATAA
19064573 ATTCTAATAC
Statistics
Matches: 125, Mismatches: 14, Indels: 25
0.76 0.09 0.15
Matches are distributed among these distances:
18 3 0.02
19 21 0.17
20 92 0.74
21 9 0.07
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.33
Consensus pattern (20 bp):
ATCATGCAATAATATAAATA
Found at i:19064508 original size:40 final size:38
Alignment explanation
Indices: 19064393--19064574 Score: 120
Period size: 40 Copynumber: 4.6 Consensus size: 38
19064383 TTATGTAAAT
* * * * *
19064393 ATATTAATTATCATACAATAATATATAATATCATACAATA
1 ATATAAATAATCATGCAATAA-ATA-ATTATCATGCAATA
* * *
19064433 ATATAAA-ATATCATACAAATATATTAATTACCATGCAATA
1 ATATAAATA-ATCATGC-AATA-AATAATTATCATGCAATA
19064473 ATATAAATAATCATGCACATAAATAATTAGTCATGCAAATA
1 ATATAAATAATCATGCA-ATAAATAATTA-TCATGC-AATA
* * *
19064514 ATA-ATAT-ATCATGCAATTAAATATATAATCATGTAAATA
1 ATATAAATAATCATGCAA-TAAATA-ATTATCATG-CAATA
* *
19064553 A-ATATATAATCATGTAATAAAT
1 ATATAAATAATCATGCAATAAAT
19064575 TCTAATACTA
Statistics
Matches: 117, Mismatches: 13, Indels: 25
0.75 0.08 0.16
Matches are distributed among these distances:
38 2 0.02
39 41 0.35
40 59 0.50
41 14 0.12
42 1 0.01
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.34
Consensus pattern (38 bp):
ATATAAATAATCATGCAATAAATAATTATCATGCAATA
Found at i:19064512 original size:60 final size:58
Alignment explanation
Indices: 19064389--19064565 Score: 173
Period size: 60 Copynumber: 3.0 Consensus size: 58
19064379 AATATTATGT
* *
19064389 AAATATATTAATTATCATACAATAATATATAAT-ATCATACAATAATATAAAATATCATAC
1 AAATATATTAATTATCATGCAATAATATA-AATAATCATGCAATAA-AT-AAATATCATAC
* * *
19064449 AAATATATTAATTACCATGCAATAATATAAATAATCATGCACATAAATAATTAGTCATGC
1 AAATATATTAATTATCATGCAATAATATAAATAATCATGCA-ATAAATAAATA-TCATAC
* * *
19064509 AAATA-A-TAATATATCATGCAATTAA-ATATATAATCATGTAAATAAATATATAATCAT
1 AAATATATTAAT-TATCATGCAA-TAATATAAATAATCATG-CAATAAATAAAT-ATCAT
19064566 GTAATAAATT
Statistics
Matches: 100, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
58 4 0.04
59 41 0.41
60 51 0.51
61 4 0.04
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.34
Consensus pattern (58 bp):
AAATATATTAATTATCATGCAATAATATAAATAATCATGCAATAAATAAATATCATAC
Found at i:19064546 original size:39 final size:40
Alignment explanation
Indices: 19064464--19064574 Score: 124
Period size: 39 Copynumber: 2.8 Consensus size: 40
19064454 TATTAATTAC
* *
19064464 CATGC-AATAATATAAATAATCATGCACATAAATAATTAGT
1 CATGCAAATAATATATATAATCATGCA-ATAAATAATTAAT
19064504 CATGCAAATAATA-ATAT-ATCATGCAATTAAAT-ATATAAT
1 CATGCAAATAATATATATAATCATGCAA-TAAATAAT-TAAT
* *
19064543 CATGTAAATAA-ATATATAATCATGTAATAAAT
1 CATGCAAATAATATATATAATCATGCAATAAAT
19064575 TCTAATACTA
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
38 4 0.06
39 35 0.56
40 16 0.26
41 7 0.11
ACGTcount: A:0.51, C:0.10, G:0.06, T:0.32
Consensus pattern (40 bp):
CATGCAAATAATATATATAATCATGCAATAAATAATTAAT
Found at i:19064629 original size:19 final size:19
Alignment explanation
Indices: 19064607--19064645 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
19064597 AAAATTAAAG
*
19064607 AAGAAAACAATAAAACAAA
1 AAGAAAACAAAAAAACAAA
* *
19064626 AAGAAAGCAAAAAAATAAA
1 AAGAAAACAAAAAAACAAA
19064645 A
1 A
19064646 CCTGGAATAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.79, C:0.08, G:0.08, T:0.05
Consensus pattern (19 bp):
AAGAAAACAAAAAAACAAA
Found at i:19064637 original size:24 final size:22
Alignment explanation
Indices: 19064603--19064646 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
19064593 AAAAAAAATT
*
19064603 AAAGAAGAAAACAATAAAACAA
1 AAAGAAGAAAAAAATAAAACAA
19064625 AAAGAAAGCAAAAAAATAAAAC
1 AAAG-AAG-AAAAAAATAAAAC
19064647 CTGGAATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 3 0.16
24 12 0.63
ACGTcount: A:0.77, C:0.09, G:0.09, T:0.05
Consensus pattern (22 bp):
AAAGAAGAAAAAAATAAAACAA
Found at i:19064640 original size:27 final size:27
Alignment explanation
Indices: 19064588--19064640 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
19064578 AATACTATAA
* *
19064588 AATAAAAAAAAAATTAAAGAAGAAAAC
1 AATAAAAAAAAAATGAAAGAAAAAAAC
*
19064615 AATAAAACAAAAA-GAAAGCAAAAAAA
1 AATAAAAAAAAAATGAAAG-AAAAAAA
19064641 TAAAACCTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.79, C:0.06, G:0.08, T:0.08
Consensus pattern (27 bp):
AATAAAAAAAAAATGAAAGAAAAAAAC
Found at i:19066248 original size:24 final size:24
Alignment explanation
Indices: 19066201--19066245 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
19066191 AAAATTAAAA
* *
19066201 CAAAAATAAATTCAAATTCAAATT
1 CAAAAACAAATTCAAAATCAAATT
19066225 CAAAAACAAA-TCAAAATCAAA
1 CAAAAACAAATTCAAAATCAAA
19066246 ATTACAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.64, C:0.16, G:0.00, T:0.20
Consensus pattern (24 bp):
CAAAAACAAATTCAAAATCAAATT
Found at i:19066783 original size:53 final size:53
Alignment explanation
Indices: 19066639--19066783 Score: 166
Period size: 55 Copynumber: 2.7 Consensus size: 53
19066629 AACATAGTGC
* * * * *
19066639 TTGATT-AAAAAAAATTATAATCATTACGTTTATGAAAGTAGAAATGTGGTTT
1 TTGATTGAAAAAAAATTATAATCATTACATTTATGAAAATAAAAAAGTGCTTT
* *
19066691 TTGATTGAAAAAAAAATTATTTATCATTACATTTATGAAAATAAAAAAGTTCTTT
1 TTGATTG-AAAAAAAATTA-TAATCATTACATTTATGAAAATAAAAAAGTGCTTT
* ** *
19066746 TTGATTGAAAAAAATTTATAAAGATTACATTTTTGAAA
1 TTGATTGAAAAAAAATTATAATCATTACATTTATGAAA
19066784 GTAGAGGCGT
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 6 0.08
53 16 0.21
54 21 0.27
55 35 0.45
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (53 bp):
TTGATTGAAAAAAAATTATAATCATTACATTTATGAAAATAAAAAAGTGCTTT
Found at i:19066840 original size:54 final size:54
Alignment explanation
Indices: 19066749--19066867 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 54
19066739 GTTCTTTTTG
* * * **
19066749 ATTGAAAAAAAT-TTATAAAGATTACATTTTTGAAAGTAGAGGCGTAATCTTTA
1 ATTGAAAAAAATATTATAAAGACTACATATTTGAAAGTAAAAACGTAATCTTTA
* * *
19066802 ATTGAAAAAAATATTATAAAGACTACGTATTT-ATAAGTAAAAACGTAGTCTTTT
1 ATTGAAAAAAATATTATAAAGACTACATATTTGA-AAGTAAAAACGTAATCTTTA
19066856 ATT-AAAAAAATA
1 ATTGAAAAAAATA
19066868 AATTTTAGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 22 0.39
54 34 0.61
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.34
Consensus pattern (54 bp):
ATTGAAAAAAATATTATAAAGACTACATATTTGAAAGTAAAAACGTAATCTTTA
Found at i:19073531 original size:14 final size:14
Alignment explanation
Indices: 19073512--19073541 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
19073502 TAATTTTGTT
19073512 AATAAAGAATAAAA
1 AATAAAGAATAAAA
19073526 AATAAAGAATAAAA
1 AATAAAGAATAAAA
19073540 AA
1 AA
19073542 AATAAATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (14 bp):
AATAAAGAATAAAA
Found at i:19074542 original size:56 final size:57
Alignment explanation
Indices: 19074465--19074621 Score: 219
Period size: 58 Copynumber: 2.7 Consensus size: 57
19074455 AAGAGAAAAT
* * *
19074465 ATTTCTAAATTGACCCAAATGGT-GAAAAATTTAGAAATCCAAC-AAAAAAAGAGAGC
1 ATTTCTAAATAGACCCAAATGGTAG-AAAATTTAGAAATCAAACAAAAAAAAGAGAGA
*
19074521 ATTTCTAAATAGACCCAAATGGTAGAAAATTTAAAAATCAAACAAAAAAAAAGAGAGA
1 ATTTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATCAAAC-AAAAAAAAGAGAGA
* *
19074579 ATTTCTAAATAGGCCCAAATGGTAGAAAGTTTAGAAATTCAAA
1 ATTTCTAAATAGACCCAAATGGTAGAAAATTTAGAAA-TCAAA
19074622 AAGAGAAAAT
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 38 0.42
57 1 0.01
58 46 0.51
59 5 0.06
ACGTcount: A:0.52, C:0.12, G:0.14, T:0.22
Consensus pattern (57 bp):
ATTTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATCAAACAAAAAAAAGAGAGA
Done.