Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167894.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62779
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:1734 original size:26 final size:26
Alignment explanation
Indices: 1698--1750 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1688 CGTTGACTTG
1698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1724 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1750 G
1 G
1751 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5647 original size:897 final size:894
Alignment explanation
Indices: 3899--6617 Score: 3948
Period size: 896 Copynumber: 3.0 Consensus size: 894
3889 GAGTCGTCTT
* *
3899 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGA-TCGAGGGTCACGGTAGCAGG
1 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACT-GAGGGTTACGGAAGCAGG
* * * *
3963 ATCCGTAGCATGTAGGGGGGGACCCGACCGATCCCCAGCTTGCGCATCTTGCCCCTCTGGTCGGC
65 ATCGGTAGCACGTAAGGGGGGACCCGACCGATCCCCAGCTTGCGCATCTTGCCCCTCTGGCCGGC
* * * *
4028 TGAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCA
130 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
4093 TACGAAGTTCATTCACAGTGTAAGATCGAACCAGACTGAGGGTTGTGAGTGCACATGCTGGGCTT
194 TACGAAGTTCATTCCCAGTGTAAGATCAAACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTT
* * ** * * * * *
4158 GGGCATGTGCTAGTGCCGTATTTTTTTTCGCTTGGGGCACCATCGTTGGAGCATCATTGGAGAAC
259 GGGCATGTGCTGGTGCTGTATTTTTTTTCGCCCGAGGCACCATCGCTGGAGCATCGTCGAAGAAC
* * * * *
4223 CTGACCAGCAGCATTGGGGTTCTGACGATTGAGGGGTGGTGGG-GTGCACACTTGATGTGCGATG
324 CTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGTGGGGGGTGTGCACACATGATGTGCGATG
* *
4287 GGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACACCCC
389 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACACCCC
* *
4352 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
454 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGA
* * *
4417 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTGTTTAGCTAAATTTTTTTGTGCAT
519 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCAT
* * * *
4482 GCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAGTTTT
584 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCTGAAAAAATTTT
* * *
4547 AAAAAAATCCCGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGAT-GTCTTGCC
648 AAAAGAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG-TCGTCTTGCC
* *
4611 ATGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
712 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
4676 GCATAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACAGCTTGCGCA
777 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCA
* * ** *
4741 TCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCCTGCTCGTTTCACCGGATG
842 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * *
4794 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGATTGGACTGAGGGTTATGGAAACAGGA
1 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTACGGAAGCAGGA
* ** * *
4859 TCGGTAGCACGTAAAGGGGGACCCGGTCGATCCTC-GACTTGCGCATCCTGCCCCTCTGGCCGGC
66 TCGGTAGCACGTAAGGGGGGACCCGACCGATCCCCAG-CTTGCGCATCTTGCCCCTCTGGCCGGC
* * *
4923 TGAGTGCCCGCACGCTCATTTTGTGGGTTGCCTTAGCTATACGGAGTTCATTCCCAGTCTAAGCA
130 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGC-ATACGGAGTTCATTCCCAGTCTAAGCA
* *
4988 TGCGAAGTTCATTCCCAGTGTAAGATCAAACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTT
194 TACGAAGTTCATTCCCAGTGTAAGATCAAACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTT
* * *
5053 GGGCAAGTGCTGGTGCTGCATTTTTTTTCGCCCGAGCCACCATCGCTGGAGCATCGTCGAAGAAC
259 GGGCATGTGCTGGTGCTGTATTTTTTTTCGCCCGAGGCACCATCGCTGGAGCATCGTCGAAGAAC
* * * * *
5118 TTGATCGGCGGCATTGGGGTTCCGATGATTGGGGGGTGAGGGGGTGTGCGCACATGATGTGCGAT
324 CTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGTG-GGGGGTGTGCACACATGATGTGCGAT
* *
5183 GGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
388 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACACCC
* * *
5248 CCTTAAAGAGCATTTTAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCAGAAATGGGG
453 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGG
*
5313 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
518 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCA
*
5378 TGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTT
583 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAAAATTT
* * *
5443 TGAAAGAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
647 TAAAAGAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
5508 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
712 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
5573 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
777 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCA
* * * *
5638 TCTCGCCTCTCTGGCCGACGCAGTGCCCGCGCGCCCGCTCGTTTCGTCGGTTG
842 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * **
5691 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAGCAAACTGAAGGTTGCAGCAGTGGGA
1 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTACGGAAGCAGGA
* * * * *
5756 TCGATAGCACG-CAGGGGGGACCCGACCGATCCCCAGTTTACGCATCTTGCCCCTCTGGCCGACT
66 TCGGTAGCACGTAAGGGGGGACCCGACCGATCCCCAGCTTGCGCATCTTGCCCCTCTGGCCGGCT
* *
5820 GA-TCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCA
131 GAGT-GCCCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
5884 TACGAAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTC
194 TACGAAGTTCATTCCCAGTGTAAGATCAAACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTT
* * * * *
5949 GGGCATGTGCTGGTGCCT-TATTTTTTTTCACCCGAGGCACCATCACCGAAGCATCG-CCAGAGA
259 GGGCATGTGCTGGTG-CTGTATTTTTTTTCGCCCGAGGCACCATCGCTGGAGCATCGTCGA-AGA
* * * *
6012 ACCTGACCGACGGCATTGGGGTTCTGGCGATTGGGGGG-GCGGGTGGTGTGCTCACCTGATGTGC
322 ACCTGACCGGCGGCATTGGGGTTCTGACGATTGGGGGGTG-GGG-GGTGTGCACACATGATGTGC
6076 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACA
385 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACA
* * *
6141 CCTCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AAAT
450 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-AGAAAT
* * * *
6205 GGGGACACCTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTT
514 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
* *
6270 TGCATGCCAAAAGAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
579 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAAA
* * *
6335 ATTTTTAAAGAATCTCGAACCGTAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
643 ATTTTAAAAGAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
6400 TGCCATGAAACTTCGCATGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGC
708 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
6465 ATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
773 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
6530 AGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCC-CCCGCTTGTTTCGTCGGTTG
838 AGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
*
6586 GCTTAGCCATACGGAGTTCATTCCCAGTCTAA
1 GCTTAGGCATACGGAGTTCATTCCCAGTCTAA
6618 CATCAGGCCG
Statistics
Matches: 1631, Mismatches: 179, Indels: 28
0.89 0.10 0.02
Matches are distributed among these distances:
894 3 0.00
895 363 0.22
896 716 0.44
897 548 0.34
898 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTACGGAAGCAGGA
TCGGTAGCACGTAAGGGGGGACCCGACCGATCCCCAGCTTGCGCATCTTGCCCCTCTGGCCGGCT
GAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGAAGTTCATTCCCAGTGTAAGATCAAACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTTGG
GCATGTGCTGGTGCTGTATTTTTTTTCGCCCGAGGCACCATCGCTGGAGCATCGTCGAAGAACCT
GACCGGCGGCATTGGGGTTCTGACGATTGGGGGGTGGGGGGTGTGCACACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTGAAAAAATTTTAAA
AGAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCC
GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
Found at i:5893 original size:26 final size:26
Alignment explanation
Indices: 5857--5907 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5847 TGACTTAGGG
*
5857 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
5883 ATACGAAGTTCATTCCCAGTGTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
5908 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:11866 original size:26 final size:26
Alignment explanation
Indices: 11836--11888 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11826 GTTGACTTAG
11836 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
11862 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11888 G
1 G
11889 ATCGGACTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12842 original size:891 final size:893
Alignment explanation
Indices: 9120--12994 Score: 5442
Period size: 890 Copynumber: 4.4 Consensus size: 893
9110 ATCCCTGGCA
* * * *
9120 TGTGCATCCTGCCCCTCTAGCCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCAT
1 TGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
9185 GCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAG
66 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAG
* ** **
9250 GGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTTTTTTCACCCGGGGCA
131 GGTTGCGGGTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTT--GTCGGGGCA
* *** * * * * * *
9315 CCATCGTCGGAGCATCGTTGGAGAACCTAACCAACGGGAATGGGGTTCCGACGATTGGGGGGGCG
194 CCATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGGGC-
*
9380 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
258 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCC
* *
9445 CTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCA
323 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
9510 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
388 GTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCCTGTACACTTC
*
9575 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGACAAGGATCATGTCTACCAAGTTTG
453 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTG
* * * * * *
9639 GGGCCAAACTCTTTTTGAAAAAATTTAAAAAAAATCCTGAATTGTAAAAAGTTTTAAAAATCGTG
518 GGGCCAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAATCGTG
*
9704 AAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
582 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
*
9769 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACGCACCTAC
647 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * * *
9834 CACCTTATCGATCCATGGCTTGCACGTCCCAG-CTCTCTAGCCGACGTACTGCCCGCCCGCCTGC
712 CACCCTATCGATCCACGGCTTGCGCATCCC-GCCACTCTAGCCGACGTAGTGCCCGCCTGCCCGC
* *
9898 TCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCCTTCCCAGTCTAAGATCAGACCAAACCGAGG
776 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGG
* * ** * ** ** * * **
9963 GTTGTGGCAGTAGGATTGGCAGCACACAGGGGGGACTTGGCCGATCCCCAGTT
841 GTTGTGGTAGCAGGATCAGTAGCACGTAGGGGGGACCCGACCGATCCTCAACT
* * *
10016 TGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
1 TGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
10081 AC-GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCTGTGTAAAATCAGACTGGACCAA
66 ACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGA
* * * * * *
10145 CGGTTACGGGTGAACAAGTTGGGCTCGGGCATGTGCTGGTGCCGTA-TTTTTTTT-T-----CAC
130 GGGTTGCGGGTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGTCGGGGCAC
** * * * *** *
10203 C-T-GGAGCACCATCACCGGAAAACCTGATCGACGGCATTGGGGTTCCGGCCATTGGGGGGACGG
195 CATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGGGC-G
* *
10266 GGGGGTGTGCGCAC---A--T--GATGGGTGCTGG----T---CCTTATATTGACCCCCTATCCC
259 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCC
*
10317 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
324 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
10382 TAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCA
389 TAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCCTGTACACTTCG
* * * *
10447 AGTTTTTAGCAGACTTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
454 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGG
*
10512 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CC---TG-AAAAAGTTTCAAAAATCGTGA
519 GGCC-AAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACGTAAAAAGTTTCAAAAATCGTGA
*
10572 GAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
583 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
*
10637 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAGCTACC
648 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** ** * * * * *
10702 ATCCTATCGATCCACGTATTGCGCATCCCATCACTCTGGCC-AGCATGGTGCACGCAC-ACCCGC
713 ACCCTATCGATCCACGGCTTGCGCATCCCGCCACTCTAGCCGA-CGTAGTGCCCGC-CTGCCCGC
* * * * *
10765 TCGTTTCATCGGTTGGCTTAGGCATACCGAGTTCATTTCCAGTCTAAGATCGGACCAAATCGAGG
776 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGG
* * * * *
10830 GTTGCGGTAGCAAGATCGGTAGCATGTAGGGGGGACCCGACCGATCACT-GACT
841 GTTGTGGTAGCAGGATCAGTAGCACGTAGGGGGGACCCGACCGATC-CTCAACT
* * * * * *
10883 TATGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGTTCGTTTTGTGGGTTGATTTAGGCAT
1 TGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * ** *
10948 ACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGCAAGATTGGACCAGACTGAG
66 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAG
* * ** * *
11013 GGTTGCGGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGTCGCATTTTTTTTCGCTCGGGGCAC
131 GGTTGCGGGTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTG-TCGGGGCAC
* * *
11078 CATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGGCGG
195 CATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGGGCGG
* * *
11143 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCTCTATCGCT
260 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCT
*
11208 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
325 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
11273 AGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGA
390 AGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCCTGTACACTTCGA
* *
11338 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAAACAAGGATCATGTCTACCAA-TTTAGG
455 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGGG
* * *
11402 GCCAAACTCCTTTTAAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
520 GCCAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAA-CGTAAAAAGTTTCAAAAATCGTGAA
* *
11467 AAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
584 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * *
11532 TTACAAGCCATAAAAATGGCA-TGGCATTGCCGAAATATGAAGATGTACCTAAACCCACCTACCA
649 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
11596 CCCTATCGATCCACGGCTTGCGCATCCTGCCACTCTAGCCGACGTAGTGCCCGCCTGCCCACTCG
714 CCCTATCGATCCACGGCTTGCGCATCCCGCCACTCTAGCCGACGTAGTGCCCGCCTGCCCGCTCG
*
11661 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
779 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTT
* * **
11726 GTGGTAGCAGGATCAGTAG--CGCAGGGGGGGACCCGATCGATCCTCGGCT
844 GTGGTAGCAGGATCAGTAGCACGTA-GGGGGGACCCGACCGATCCTCAACT
* * * * *
11775 TTTGCATCTTGCCCCTCTGGCCAGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCAT
1 TGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
11840 ACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGACTGCACCGAG
66 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAG
* *
11905 GGTTGTGGCTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGTCGGGGCACC
131 GGTTGCGGGTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGTCGGGGCACC
* * * * * * *
11970 ATCCCCAGAGCATCGCCGGAGAACTTGATCGACGGCATTGAGGTTCCGTTGATTGGGGGGGCGTG
196 ATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGGGCGGG
*
12035 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTTGCCCTCTATCCCTC
261 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTC
12099 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
326 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
12164 GCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTATACTTTGAG
391 GCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCCTGTACACTTCGAG
* *
12229 TTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAAAACCAGGATCATGTCTACCAA-TTTGGGG
456 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGGGG
* *
12293 CCAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAAACGTAAAAAGTTTCAAAAATGGTGAAA
521 CCAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC-GAACGTAAAAAGTTTCAAAAATCGTGAAA
12358 AATAGAAAACGAGTCGTCTT-CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
585 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
*
12422 TACAAGCCATAAAAATGGCA-TGGCATTGTC-GAAATATGAAGATGTGCCTAAACCCACCTACCA
650 TACAAGCCATAAAAATGGCATTGGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
12485 CCCTATCGATCCACGGCTTGCGCATCCCGCCACTCTAACTGACGTAGTGCCCGCCTGCCCGCTCG
714 CCCTATCGATCCACGGCTTGCGCATCCCGCCACTCTAGCCGACGTAGTGCCCGCCTGCCCGCTCG
* *
12550 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
779 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTT
*
12615 GTGGTAGCAGGATCAGTAGCACGTGGAGGGGGACCCGACCGATCCTCAACT
844 GTGGTAGCAGGATCAGTAGCACGTAG-GGGGGACCCGACCGATCCTCAACT
* * *
12666 TGTGCATCCTACCCCTCTGGCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCAT
1 TGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
12731 ACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTTCTAGTGTAAGATCGGACTGGACCGAG
66 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAG
* * * *
12796 GGTTGTGGCTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCAGGGCACC
131 GGTTGCGGGTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGTCGGGGCACC
* * *
12861 ATCGCCGGAGCATCACCGAAGAACCTGATCGACGGCATTGGGGTTCCGGTGATTGGGGGGGCGTG
196 ATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGGGCGGG
* **
12926 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCACCCTCTATCCCTC
261 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTC
12991 ATCA
326 ATCA
12995 CGGGCATTCT
Statistics
Matches: 2651, Mismatches: 280, Indels: 100
0.87 0.09 0.03
Matches are distributed among these distances:
866 1 0.00
867 425 0.16
868 12 0.00
870 1 0.00
871 175 0.07
872 36 0.01
873 27 0.01
874 1 0.00
875 4 0.00
876 15 0.01
877 48 0.02
878 12 0.00
879 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 12 0.00
885 59 0.02
886 1 0.00
887 5 0.00
888 27 0.01
889 255 0.10
890 483 0.18
891 409 0.15
892 208 0.08
893 164 0.06
894 106 0.04
895 9 0.00
896 152 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
TGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAG
GGTTGCGGGTGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGTCGGGGCACC
ATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGGGCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCCTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTTGGGG
CCAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACGTAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGCCACTCTAGCCGACGTAGTGCCCGCCTGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGT
GGTAGCAGGATCAGTAGCACGTAGGGGGGACCCGACCGATCCTCAACT
Found at i:14794 original size:11 final size:10
Alignment explanation
Indices: 14770--14826 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
14760 ATGGGGGCAT
14770 AAAAAA-AAA
1 AAAAAAGAAA
* *
14779 TAAAAACAACA
1 AAAAAAGAA-A
14790 AAAAAAGAGAA
1 AAAAAAGA-AA
14801 AAAAAAGAAA
1 AAAAAAGAAA
*
14811 AAAAAAGAAG
1 AAAAAAGAAA
14821 AAAAAA
1 AAAAAA
14827 TTGGTTATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
9 5 0.12
10 19 0.46
11 16 0.39
12 1 0.02
ACGTcount: A:0.86, C:0.04, G:0.09, T:0.02
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:14805 original size:22 final size:22
Alignment explanation
Indices: 14780--14826 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
14770 AAAAAAAAAT
14780 AAAAACAACAAAAAAAG-AGAAA
1 AAAAACAA-AAAAAAAGAAGAAA
*
14802 AAAAAGAAAAAAAAAGAAGAAA
1 AAAAACAAAAAAAAAGAAGAAA
14824 AAA
1 AAA
14827 TTGGTTATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.85, C:0.04, G:0.11, T:0.00
Consensus pattern (22 bp):
AAAAACAAAAAAAAAGAAGAAA
Found at i:14819 original size:19 final size:19
Alignment explanation
Indices: 14770--14826 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
14760 ATGGGGGCAT
* *
14770 AAAAAAAAATAAAAACAAC
1 AAAAAAAAAGAAAAAAAAC
* *
14789 AAAAAAAGAGAAAAAAAAG
1 AAAAAAAAAGAAAAAAAAC
14808 AAAAAAAAAGAAGAAAAAA
1 AAAAAAAAAGAA-AAAAAA
14827 TTGGTTATGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 26 0.81
20 6 0.19
ACGTcount: A:0.86, C:0.04, G:0.09, T:0.02
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAAAAC
Found at i:16115 original size:33 final size:33
Alignment explanation
Indices: 16072--16415 Score: 364
Period size: 33 Copynumber: 10.5 Consensus size: 33
16062 ATAAAATAAA
*
16072 ATTTAAGCCCAGTTTATTTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
16105 TTTTAAGCCCAGTTTATCTGGCCATCAATGAAA
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
16138 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* * *
16171 ATTTAAGCCCAGTTTATCTGGCTATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
16203 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
16236 CTTTAAGCCCAGTTTATCCGGCTC-TCAATGAA-
1 ATTTAAGCCCAGTTTATCTGGC-CATTAATGAAG
* *
16268 ACTTTAAGTCCAGTTTATTTGGCCATTAATGAAG
1 A-TTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * * *
16302 CTTTAAGCCCAGTTCATCTGGCCATCAATGAGG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
16335 TTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATT--AATGAAG
*
16368 ATTTAAGCCCAGTTTAGCTGGCC-TTCAAT-AA-
1 ATTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
*
16399 ATTTAAGCCAAGTTTAT
1 ATTTAAGCCCAGTTTAT
16416 TTAGCCCCAA
Statistics
Matches: 259, Mismatches: 42, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
31 16 0.06
32 33 0.13
33 205 0.79
34 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (33 bp):
ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
Found at i:16176 original size:66 final size:66
Alignment explanation
Indices: 16069--16415 Score: 420
Period size: 66 Copynumber: 5.3 Consensus size: 66
16059 GGAATAAAAT
* *
16069 AAAATTTAAGCCCAGTTTATTTGGCCATTAATGAAGTTTTAAGCCCAGTTTATCTGGCCATCAAT
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
16134 G
66 G
* *
16135 AAAATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGATTTAAGCCCAGTTTATCTGGCTATCAA
1 AAAATTTAAGCCCAGTTTATCTGGCCAT-TAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAA
16199 TG
65 TG
* * * *
16201 -ATATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCCGGCTC-TCAA
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAA
16264 TG
65 TG
* * * * *
16266 AAACTTTAAGTCCAGTTTATTTGGCCATTAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
16331 G
66 G
*** * * * *
16332 AGGTTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCA
1 AAAATTTAAGCCCAGTTTATCTGGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATCA
16395 AT-
64 ATG
*
16397 -AAATTTAAGCCAAGTTTAT
1 AAAATTTAAGCCCAGTTTAT
16416 TTAGCCCCAA
Statistics
Matches: 241, Mismatches: 33, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
64 16 0.07
65 59 0.24
66 166 0.69
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (66 bp):
AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
G
Found at i:16307 original size:131 final size:130
Alignment explanation
Indices: 16072--16436 Score: 438
Period size: 131 Copynumber: 2.8 Consensus size: 130
16062 ATAAAATAAA
* * *
16072 ATTTAAGCCCAGTTTATTTGGCCATTAATGAAGTTTTAAGCCCAGTTTATCTGGCCATCAATGAA
1 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG-A
* * *
16137 AATTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAGTTTATCTGGCTATCAATGA
65 AATTTAAG-CCAGTTTATTTGGCCTCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAATGA
16202 -T
129 GT
* *
16203 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCCGGCTC-TCAATGA
1 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAATGA
* *
16267 AACTTTAAGTCCAGTTTATTTGGCCAT-TAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
65 AA-TTTAAG-CCAGTTTATTTGGCC-TCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAAT
16331 GAGGT
127 GA-GT
* * *
16336 -TTTAAACCTAGTTTATCTGG-C-TTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCAAT-
1 ATTTAAGCCTAGTTTATCTGGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG
* * * *
16397 AAATTTAAGCCAAGTTTATTTAGCCCCAAAAGAAGTTTTA
64 AAATTTAAGCC-AGTTTATTTGGCCTCAAATGAAGATTTA
16437 GAGTTTCAAA
Statistics
Matches: 205, Mismatches: 19, Indels: 21
0.84 0.08 0.09
Matches are distributed among these distances:
129 2 0.01
130 33 0.16
131 117 0.57
132 52 0.25
133 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (130 bp):
ATTTAAGCCTAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGAA
ATTTAAGCCAGTTTATTTGGCCTCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAATGAGT
Found at i:17236 original size:23 final size:23
Alignment explanation
Indices: 17188--17247 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
17178 ACCCGAGTCA
** *
17188 ATTCTGTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTCCAAGCACG
*
17211 ATTCTGTAAGACCTTCAAGCACG
1 ATTCTGTAAGACCTCCAAGCACG
*
17234 ATT-TTTAAGACCTC
1 ATTCTGTAAGACCTC
17248 TGGGCATAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
22 9 0.29
23 22 0.71
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (23 bp):
ATTCTGTAAGACCTCCAAGCACG
Found at i:17279 original size:132 final size:132
Alignment explanation
Indices: 17101--17467 Score: 447
Period size: 133 Copynumber: 2.8 Consensus size: 132
17091 AAGATTTTGA
* * * * * *
17101 GATTTGTAAGACCTCTAGGCATAATTTTGATTTG-GAATGTTGTCCCGATCGATTCTTTAT-TTC
1 GATTTTTAAGACCTCTGGGCATAATTTCGATTCGCG-ATGTTATCCCGATCGATTCCTTATCTT-
* * *
17164 TGACTTGCAATGTTA-CCCGAGTCAATTCTGTAAGACCTCCGGGCATGATTCTGTAAGACCTTCA
64 TGACTTACAATGTTATCCC-AGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACC-TCA
17228 AG-CAC
127 AGACAC
17233 GATTTTTAAGACCTCTGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCCTTATCTTTC
1 GATTTTTAAGACCTCTGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCCTTATCTTT-
* * * *
17298 GACTTACGATTTTATTCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCCAGA
65 GACTTACAATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCAAGA
* *
17363 TAT
130 CAC
* * * *
17366 GATTCTTAAGACCTCCGAGCGTAATTTCGATTCGCTG-TGTTATCCCGATCGATTCCTTATCTTT
1 GATTTTTAAGACCTCTGGGCATAATTTCGATTCGC-GATGTTATCCCGATCGATTCCTTATC-TT
* *
17430 TGACTTACTATGTTATCCCAGTCGATTTTGTAAGACCT
64 TGACTTACAATGTTATCCCAGTCGATTCTGTAAGACCT
17468 TAGGACATAA
Statistics
Matches: 205, Mismatches: 23, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
132 57 0.28
133 142 0.69
134 6 0.03
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (132 bp):
GATTTTTAAGACCTCTGGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCCTTATCTTTG
ACTTACAATGTTATCCCAGTCGATTCTGTAAGACCTCCGGGCATGATTCTATAAGACCTCAAGAC
AC
Found at i:17378 original size:22 final size:23
Alignment explanation
Indices: 17320--17381 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
17310 TATTCCAGTC
* * *
17320 GATTCTGTAAGACCTCCGGGCAT
1 GATTCTATAAGACCTCCAGACAT
*
17343 GATTCTATAAGACCTCCAGATAT
1 GATTCTATAAGACCTCCAGACAT
17366 GATTCT-TAAGACCTCC
1 GATTCTATAAGACCTCC
17382 GAGCGTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 10 0.29
23 25 0.71
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (23 bp):
GATTCTATAAGACCTCCAGACAT
Found at i:17585 original size:88 final size:88
Alignment explanation
Indices: 17366--17585 Score: 270
Period size: 87 Copynumber: 2.5 Consensus size: 88
17356 CTCCAGATAT
* *
17366 GATTCT-TAAGACCTCCGAGCGTAATTTCGATTCGC-TGTGTTATCCCGATCGATTCCTTATCTT
1 GATTCTGTAAGACCTCCGGGCATAATTTCGATTCGCGTGT-TTATCCCGATCGATTCCTTATCTT
*
17429 TTGACTTACTATGTTATCCCAGTC
65 TTGACTTACGATGTTATCCCAGTC
* ** *
17453 GATTTTGTAAGACCTTAGGACATAATTTCGATTCGCGATG-TTATCCCGATCGATT-CTTCATCT
1 GATTCTGTAAGACCTCCGGGCATAATTTCGATTCGCG-TGTTTATCCCGATCGATTCCTT-ATCT
*
17516 TTTGAC-TGCGATGTTATCCCAGTC
64 TTTGACTTACGATGTTATCCCAGTC
* * *
17540 TATTCTGTAAGACCTCCGGGCATAATTTCAATTCTCGTGTCTTATC
1 GATTCTGTAAGACCTCCGGGCATAATTTCGATTCGCGTGT-TTATC
17586 TTGATTGATT
Statistics
Matches: 112, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
86 2 0.02
87 54 0.48
88 54 0.48
90 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.39
Consensus pattern (88 bp):
GATTCTGTAAGACCTCCGGGCATAATTTCGATTCGCGTGTTTATCCCGATCGATTCCTTATCTTT
TGACTTACGATGTTATCCCAGTC
Found at i:17801 original size:15 final size:15
Alignment explanation
Indices: 17783--17823 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
17773 ATATTATAAG
17783 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
17798 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
17812 -AATACAAAAAAA
1 AAATACAAAAAAA
17824 TAGCAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:17810 original size:14 final size:14
Alignment explanation
Indices: 17783--17825 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
17773 ATATTATAAG
17783 AAATACAAAAAAAAT
1 AAATAC-AAAAAAAT
*
17798 AAATACCAAAAAAT
1 AAATACAAAAAAAT
17812 -AATACAAAAAAAT
1 AAATACAAAAAAAT
17825 A
1 A
17826 GCAAAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 12 0.48
14 7 0.28
15 6 0.24
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:19224 original size:17 final size:17
Alignment explanation
Indices: 19204--19270 Score: 75
Period size: 17 Copynumber: 4.0 Consensus size: 17
19194 CTAAGTTTTT
19204 AAAACCCCTAAAAATCC
1 AAAACCCCTAAAAATCC
*
19221 AAAATCCCCT-AAAATTC
1 AAAA-CCCCTAAAAATCC
* *
19238 AAAACCTCTTAAAATCC
1 AAAACCCCTAAAAATCC
*
19255 AAAA-TCCTAAAAATCC
1 AAAACCCCTAAAAATCC
19271 TAAAGTCAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
16 13 0.31
17 24 0.57
18 5 0.12
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAACCCCTAAAAATCC
Found at i:22179 original size:900 final size:897
Alignment explanation
Indices: 20182--22534 Score: 3451
Period size: 900 Copynumber: 2.6 Consensus size: 897
20172 CCGTTACGAC
* *
20182 AATGTGTGTTGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
1 AATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
20246 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
* * * * *
20311 TAAAAT-GAGACACTTTTTTTAAATGGTCACAAAATCATGTACACTTCGAGTCTTTAGCTGAATT
131 TGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCCTTTACACTTCGAGTTTTTAGCTGAATT
* * ** *
20375 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCTAAAAATTTTTTT
196 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCT
* **
20440 GAAAAAATTTAAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
260 GAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
* *
20505 TCGTCTTGCCATGAAACTTCACATGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
325 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
20570 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
390 AATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
20635 AGCTTTCGCATCCCGCCTCTCTGGCCGGCGTAATGCCCGCCCGTCGGCTCGTTTCGTCGGTTGGC
455 GGCTTGCGCATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGTCGG-TCGTTTCGTCGGTTGAC
*
20700 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAAGATT
519 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGCGGCAGCAAGATT
* ** * *
20765 GGTAGCATGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTAA
584 GGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTAA
* * * * *
20830 GCACTCCATACGCTCGTTTCGTGGGTAGACTTAGCCATACGGAGTTTATTCCCAGTCTAAGCATA
649 GCACCCCATA-GCTCGTTTCATGGGTAGACTTAGCCATACAGAGTTCATTCCCAGTCTAAACATA
* * * ** *
20895 CAGAATTCATTCCTAGTGTAAGATCAAATTGAACCGAGGCTTGTAGGTGCACATGCTGGGCTTGG
713 CAGAATTCATTCCCACTGTAACATCAAACCGAACCGAGGCTTGTAGGTGCACATGCTGGGCTCGG
** * *
20960 GCATGTGCTGGTGCCACATTGTTTTCGCCCGGGGTGCCATAGCCGGAGCATCGCCGGAGAACCTG
778 GCATGTGCTGGTGCCACATTGTTTTCGCCCGGGGCACCATAGCCGGAGCATCGCAGGAGAACCAG
**
21025 ACCGGCGGCATTGGAGGTTCCAACGATTTGGGGGGGCAGGGGGGTGTGCGCAAAT
843 ACCAACGGCATTGGAGGTTCCAACGATTTGGGGGGGCAGGGGGGTGTGCGCAAAT
*
21080 AATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1 AATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
21145 ACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
* * *
21210 TGAAA-GAGTGACAGTTTTTTCAAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTTTGCTGAA
131 TGAAATG-GAGACACTTTTTTCAAATGGTCACAAAATCCTT-TACACTTCGAGTTTTTAGCTGAA
21273 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTT
194 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAAATCCTT
*
21338 CTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAATCG
258 CTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
*
21403 AGTCATCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
323 AGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
21468 AAAATGGCATTGGCATGGAAGAAATATGAGGATGTGCCTAAACTCACCTACCACCCTATCGATCC
388 AAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
21533 ACGGCTTGCGCATCCCTCCTCTCTGGCCGACGTAGTGCCCGCTCGGTCGGTCGTTTCGTCGGTTG
453 ACGGCTTGCGCATCCCACCTCTCTGGCCGACGTAGTGCCCGC-CCGTCGGTCGTTTCGTCGGTTG
* * * * *
21598 ACTAAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGACTAAGGGTTGTGGCAGCAGGA
517 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGCGGCAGCAAGA
* *
21663 TTGGCAGCACATAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCAGCT
582 TTGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCT
* * *
21728 AAGCGCCCGCAT-GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAACA
647 AAGCACCC-CATAGCTCGTTTCATGGGTAGACTTAGCCATACAGAGTTCATTCCCAGTCTAAACA
* * * *
21792 TACAGAGTTCATTCCCACTGTAACATCAGACCGGACCGAGG-GT-TACGAGTGCACATGCTGGGC
711 TACAGAATTCATTCCCACTGTAACATCAAACCGAACCGAGGCTTGTA-G-GTGCACATGCTGGGC
*
21855 TCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACCA-ATGCCGGAGCATCGTCAGG-G
774 TCGGGCATGTGCTGGTGCCACATTGTTTTCGCCCGGGGCACCATA-GCCGGAGCATCG-CAGGAG
* * *** * ** * *
21918 AACCAGACCAACGGCATTGGGGGTTTCGGTGA-TTGGGTGGGTGGGGGGGTGTGTGCACAT
837 AACCAGACCAACGGCATTGGAGGTTCCAACGATTTGGGGGGGCAGGGGGGTGTGCGCAAAT
*
21978 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
1 AATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
22043 ACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGT-
66 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
* *
22107 TCGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCCTTTACACTTCGAGTTTTTAGCTGAAT
131 T-GAAATGGAGACACTTTTTTCAAATGGTCACAAAATCCTTTACACTTCGAGTTTTTAGCTGAAT
* *
22172 TTTTTTTTGCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTT
195 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAA-ATCCTT
* * * * *
22235 CTGAAAAAATGTTAAAAAAATCCCGAACCATAAAAGGTTTTGAAAATCATGAAAAATAGAAAACG
258 CTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
* * *
22300 AGT-AGTCTTGCCATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAGGCCAT
323 AGTCA-TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
22364 -AAAATGGCATTGGCATGGTAGAAATATGAAGATATGCCTAAACCCACCTACCACTCTAAT-GAT
387 AAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGAT
* * * * *
22427 CCAAGGCTTGCGCATCCCACCTCTCTGGCCGACGTAGTGCCCACCCGCCTGCTTGTTTCGTCGGT
451 CCACGGCTTGCGCATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGTC-GGTCGTTTCGTCGGT
*
22492 TGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCGGACC
515 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
22535 GGACCGAGGG
Statistics
Matches: 1315, Mismatches: 121, Indels: 40
0.89 0.08 0.03
Matches are distributed among these distances:
895 3 0.00
896 149 0.11
897 164 0.12
898 241 0.18
899 283 0.22
900 466 0.35
901 9 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (897 bp):
AATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
TGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCCTTTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTG
AAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGTCGGTCGTTTCGTCGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGCGGCAGCAAGATTGG
CAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTAAGC
ACCCCATAGCTCGTTTCATGGGTAGACTTAGCCATACAGAGTTCATTCCCAGTCTAAACATACAG
AATTCATTCCCACTGTAACATCAAACCGAACCGAGGCTTGTAGGTGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCACATTGTTTTCGCCCGGGGCACCATAGCCGGAGCATCGCAGGAGAACCAGACC
AACGGCATTGGAGGTTCCAACGATTTGGGGGGGCAGGGGGGTGTGCGCAAAT
Found at i:24147 original size:26 final size:26
Alignment explanation
Indices: 24111--24163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24101 GTTGACTTAG
*
24111 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
24137 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24163 G
1 G
24164 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25142 original size:896 final size:893
Alignment explanation
Indices: 23380--25285 Score: 2643
Period size: 896 Copynumber: 2.1 Consensus size: 893
23370 ACCTAATCGA
* * * *
23380 CAGCATTGGGGGTTCTGACGATTTGGGGGCAGGGGGGTGTGTGCACATGATGTACGATGGGTGCT
1 CAGCATTGGGGTTTCAG-CGA-TTGGGGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
** *
23445 GGTACTTGGCCCTTATATTGGCCCCCTATATCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
62 GGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
23510 GAGCAATTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTATGAAGTGGGGACACTTT
126 GAGCAATTGACATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTT
* * * * *
23575 TTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
191 TTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAACTGAATTGTTTTATGCATGCCAAC
23640 AAAAATACAAGGATCACGTCTAAAATGGTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAA
256 AAAAATACAAGGATCACGTCTAAAATGGTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAA
* ** * *
23705 GTCCCGAATCATAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTTATCTTGCCACGAAAC
321 ATCCCGAATCATAAAAAGTTTCAAAATTCATGAAAAATAGAAAACAAGTCATCTTGCCACGAAAC
* *
23770 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGGC
386 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGC
23835 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCC
451 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCC
* * ** * * *
23900 TCTTTCGTCGGTGTAGTGTCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATGCGGAGATC
516 TCTCTCGCCGACGTAGTGCCCGCCCACCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGATC
* *
23965 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGG
581 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCGGCAGCACACAGAGGGG
* ** * * * *
24030 GACCCGACCGATCCCCAGCTTATGCATCTTGCCCTTCTGGCCAGCTAAGCACCCGCACACTCATT
646 GACCCGACCAATCCCCAGCTTACACATCCTACCCCTCTAGCCAGCTAAGCACCCGCACACTCATT
* * * **
24095 TCATGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTG
711 TCATGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGCA
* * * * *
24160 TAAGATCAGATCAGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCA
776 TAAGATCAGATCAGACCGAGGGTTACAGGTGCACATGCTAGGCTCAGGCATATGCTAGTGCAGCA
** * * *
24225 TTATTTTTCCCCCGGGGCACCATCGCCGAAGCATCACCGAAGAACCTGACCAT
841 TTATTTTTCCCAAGGGGCACCATCACCAAAGCATCACCGAAGAACCTGACCAG
* *
24278 CAGCATTAGGGGTTTCAGCGATTGGGGGTGGGGGGTGTGCGCATATGATGTGCAATGGGTGCTGG
1 CAGCATT-GGGGTTTCAGCGATTGGGGG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
24343 TACTTGGCCCTTATATTGGCCCCTTATCCCTCATCACACCTCGAGAACTCACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
24408 GCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
128 GCAATTGACATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTT
* *
24473 TCAAATGGTCACAAAATCCTGTACACTTTAAGTTTTTAACTGAATTGTTTTGTGCATGCCAACAA
193 TCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAACTGAATTGTTTTATGCATGCCAACAA
* * * *
24538 AAATACAAGGATCACGTCTACGAA-GTTTGGGGCCAAAACTCCTTCTGAAAGAATTTTAAAAAAA
258 AAATACAAGGATCACGTCTA-AAATGGTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAA
* * * *
24602 TCTCGAATCGTAAAAAGTTTCCAAAA-TCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
322 TCCCGAATCATAAAAAGTTT-CAAAATTCATGAAAAATAGAAAACAAGTCATCTTGCCACGAAAC
24666 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGC
386 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGC
* *
24731 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCC-GC
451 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCTGC
* * * * * * *
24795 CTCTCTGGCCGACGTAGTGCCCGTCCGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGGT
515 CTCTCTCGCCGACGTAGTGCCCGCCCACCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGAT
* * *
24860 CATTCCCTA-TCTTAGATCAGATC-GACCCGAGGGTT-GGGTCAACAGGATCGGCAGCACGA-AG
580 CATTCCC-AGTCTAAGATCAGACCAGA-CCGAGGGTTACGG-CAACAGGATCGGCAGCAC-ACAG
** * * *
24921 AGGGGGACCCGATTAATCCTCAGCTTGCACATCCTACCCCTCTAGCCAGC-AGAGCACCCGCACG
641 AGGGGGACCCGACCAATCCCCAGCTTACACATCCTACCCCTCTAGCCAGCTA-AGCACCCGCACA
** *
24985 CTTGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTGCATTC
705 CTCATTTCATGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTGCATTC
* * **
25050 CCAGCATAAGATCAGATCGGACTGAGGGTTGTAGGTGCACATGCTAGGCTC-GGCCATATGCTAG
770 CCAGCATAAGATCAGATCAGACCGAGGGTTACAGGTGCACATGCTAGGCTCAGG-CATATGCTAG
* * *
25114 TGTCAG-ATT-TCTTTTCGCAAGGGGCACCATCACCAAAGCATCATCGAAGAACCTGACCGG
834 TG-CAGCATTAT-TTTTCCCAAGGGGCACCATCACCAAAGCATCACCGAAGAACCTGACCAG
* * *
25174 CAGCATTGGGGGTTCCAACGATT---GGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 CAGCATT-GGGGTTTCAGCGATTGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
25236 ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
65 ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
25286 CCTCCCTGTA
Statistics
Matches: 891, Mismatches: 104, Indels: 33
0.87 0.10 0.03
Matches are distributed among these distances:
891 27 0.03
892 56 0.06
893 2 0.00
895 12 0.01
896 755 0.85
897 21 0.02
898 10 0.01
899 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (893 bp):
CAGCATTGGGGTTTCAGCGATTGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
ATTGACATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCCTGTACACTTCAAGTTTTTAACTGAATTGTTTTATGCATGCCAACAAAAA
TACAAGGATCACGTCTAAAATGGTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCC
GAATCATAAAAAGTTTCAAAATTCATGAAAAATAGAAAACAAGTCATCTTGCCACGAAACTTCAC
ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCT
CGCCGACGTAGTGCCCGCCCACCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGATCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCGGCAGCACACAGAGGGGGACCC
GACCAATCCCCAGCTTACACATCCTACCCCTCTAGCCAGCTAAGCACCCGCACACTCATTTCATG
GCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGCATAAGA
TCAGATCAGACCGAGGGTTACAGGTGCACATGCTAGGCTCAGGCATATGCTAGTGCAGCATTATT
TTTCCCAAGGGGCACCATCACCAAAGCATCACCGAAGAACCTGACCAG
Found at i:26731 original size:26 final size:26
Alignment explanation
Indices: 26695--26747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26685 GTTGACTTAG
26695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
26721 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26747 G
1 G
26748 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27352 original size:896 final size:890
Alignment explanation
Indices: 25290--28285 Score: 4228
Period size: 896 Copynumber: 3.4 Consensus size: 890
25280 ACTCACCCTC
* * *
25290 CCTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACAT
1 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * *
25355 CTACCAAGCTTGGGGCCAAAATTCCTTCTAAAAAAATTTTTAAAAAATCCCAAACCGTAATAAGT
66 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGT
* * *
25420 TTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCCTAAGG
131 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* * * *
25485 GACCATTGTATGAATTTAGAAGCCAT-AAAATGGCATTGGCACT-GCAGAAATATGAATATGCGC
196 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGGTAGAAATATGAAGATGTGC
** *
25548 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTAGCGTAGTG
260 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCGA-CGTAGTG
* * * * * *
25613 CCTGCCTGCCCGGTCGTTTCGTTGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
324 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** ** * *
25678 GATCGGACCGAGGGTAATGGCAGTAGGATC-GATAGCACGTAGAGGGGGACCAAGCCGATCCTCG
389 GA-CCGAATGAGGGTTGTCGCAGTAGGATCAG-TAGCACGTAGAGGGGGACCTAGCCGATCC-CG
* * * * *
25742 GCTTGTGCATCCTACCCCTCTGGCTGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGG
451 ACTTGTGCATCCTGCCCCTCTGGC-GGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * * *
25807 CATACGGAGTTCATTCCCAGTCTAGGCATACAAAGTTCATTCCTAGTGCAAGATCAAACCGGACC
515 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGATCGGACC
* ** * ** **
25872 GAGGGTTGCGGGTGCACATGCTGGGCTCGACCATATGCTGGTGCCGGATTTCTTTTTGC-CCGGG
580 GAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTT-TTTTT-CACTAGG
*** * *
25936 GCACCATCGCTAAAGCATCGTCGGAGAACCTGACCGGTGGCATTACGGGTTCC-GACGATT----
643 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGGGTTCCAG-CGATTGGGG
* * * **
25996 ---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGGCCTTATATTGGCCCCTAT
706 GGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAACCCCTAT
* * *
26058 CCCTCATTAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
771 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
** *
26123 CAGTAGCCATTAAAGTGTCTGAAATAAGGACATTTTTTTCAAATGGTCACAAAAT
836 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
26178 CCTATACACTTCGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
1 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
26243 CTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTAAAAAAAAATCCTGAACCGTAAAAAG
66 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAAATCCCGAACCGTAAAAAG
26308 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
130 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* * *
26373 GGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGATAGAAATATGAAGATATGC
195 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGC
* * *
26438 CTGAACCCACCTACCACCCTATCGATCCACCGCTTGTGCATCCCGCCTCTCTGGTCGACGTAGTG
260 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG-CGACGTAGTG
*
26503 CCCGCCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT-TAAGATCA
324 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
26567 GACCGAATAGAGGGTTGTTGTAGTAGGATCAGTAGCACATAGAGGGGTACCTAGCCGATGCCCGA
389 GACCGAAT-GAGGGTTGTCGCAGTAGGATCAGTAGCACGTAGAGGGGGACCTAGCCGAT-CCCGA
* ** *
26632 CCTACGCATCCTGCCCCTCTGGACGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
452 CTTGTGCATCCTGCCCCTCTGG-CGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
**
26697 ATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGATCGGACCG
516 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGATCGGACCG
26762 AGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACTTAGGGC
581 AGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCAC-TAGGGC
* *
26827 ACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCAGCATTGGGGTTCCAGCGATTGGGGGGGC
645 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATTGGGGGGG-
26892 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTCAACCCCTATCC
709 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-AACCCCTATCC
26957 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
773 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
27022 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
838 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
27075 CTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATGACGT
1 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
27140 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAGTTTTAAAAAAATCCCGAACAGTAAAAAGT
66 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGT
27205 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
131 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
27270 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCC
196 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCC
*
27335 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGC
261 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC-GACGTAGTGC
* * * * ** *** *
27400 CCGCACGCTCGCTCGTTTCCTCAGTTGGCTTAGGCATATAGAGTTCATTTAGAGTCTAAGATTAG
325 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
27465 ACCGAACTGAGGGTTGCCACAGCAAGATCAGCAGCACGCAG-GGGGGACCTGGCCGATCCC-ATG
390 ACCGAA-TGAGGGTTGTCGCAGTAGGATCAGTAGCACGTAGAGGGGGACCTAGCCGATCCCGA--
*
27528 CTTGTGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
452 CTTGTGCATCCTGCCCCTCTGG-CGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* *
27593 ATACGGAGTTCATTCCC-GTTATAAGCATACAGAGATCATTCCCAGTGTAAGATCAGATCGGACC
516 ATACGGAGTTCATTCCCAG-TCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGATCGGACC
* * *
27657 AAGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATA-TTTTTTTCACCTAGGG
580 GAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCA-CTAGGG
** *
27721 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTAGCGATTGGGGGGT
644 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATTGGGGGG-
* * * *
27786 GGGCGAGGTGTGCGTACATGATCTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTAT
708 GGG-GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTA-ACCCCTAT
* * * *
27851 CCCTCATCGAACCTCAAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTTC
771 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
27916 TAGTAGCCATTAAAGTGTGTGAAATGGGCACACTTTTTTCAAATGGTCACAAAAT
836 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
27971 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGCATGCCAAAAAAAATACAAGGATCACG
1 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACG
* * * * * * * **
28035 TCTACCAAGTTTTGGGCGAAAACTCCTTTTGACAAAATGTTAAAAAGATCCTGAATTGTAAAAAG
65 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAG
* * * *
28100 TTTCAAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAG
130 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
28165 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGC
195 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGC
* * * *
28230 CTAAACCCACCTACCAACCTATCGTTCCATGGCTTGCGCATCCCGCCTCTTTGGCG
260 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCG
28286 GCAGTAGGAT
Statistics
Matches: 1895, Mismatches: 182, Indels: 55
0.89 0.09 0.03
Matches are distributed among these distances:
887 1 0.00
888 115 0.06
889 359 0.19
890 139 0.07
891 2 0.00
894 1 0.00
895 83 0.04
896 939 0.50
897 255 0.13
898 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCGACGTAGTGCC
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGAATGAGGGTTGTCGCAGTAGGATCAGTAGCACGTAGAGGGGGACCTAGCCGATCCCGACTTG
TGCATCCTGCCCCTCTGGCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGATCGGACCGAGGGT
TGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACTAGGGCACCATC
GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATTGGGGGGGGGGGGGT
GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAACCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
Found at i:30211 original size:26 final size:26
Alignment explanation
Indices: 30175--30225 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
30165 TTGACTTAGG
*
30175 CATACAGAGTTCATTCCGAGTCTAAT
1 CATACAGAGTTCATTCCCAGTCTAAT
*
30201 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
30226 GATTGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAT
Found at i:30319 original size:894 final size:892
Alignment explanation
Indices: 28348--30367 Score: 2804
Period size: 894 Copynumber: 2.3 Consensus size: 892
28338 ATCCTGCTCT
* * ** *
28348 TCTGGCCGGTTGAGCACCCATACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
1 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CC
**
28413 CA-TCTAAGCATACGGAGTTCATTGATAGTGTAAGATCGGACCA-GATCGAGGGTTGCGGGTGCA
65 CAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGA-CAGGATCGAGGGTTGCGGGTGCA
* *
28476 CATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCTCTCGGGGCACCATCGTCGGAG--
129 CATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTTGGGGCACCATC-TCGGAGCA
* * *
28539 A-ACC----A-TG-CCGACGGCATTGAGGTTCC-AGCGATTGGGGGCCCGGAGGGGTGTGTGCAC
193 ACACCGAGAACTGACCGGCGGCATTGAGGTTCCGA-CGATTGGGGG-GCGGAGGGGTGTGCGCAC
* *
28596 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAACCTCGA
256 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGA
* *
28661 GAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
321 GAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
28726 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
386 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* *
28791 GTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
451 GTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
28856 CTGAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTAAAAAATTATGAAAAATAGAAAACG
516 CTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTAAAAAATCATGAAAAATAGAAAACG
*
28921 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
581 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATA
* * ** *
28986 AAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTGATCCA
646 AAAATGGCATTGGCATGGCAAAAATATGAAGATGCACCTAAACCCACCTACCACCCTTCGATCCA
* * *
29051 CGGCTTACGCATCCCGCCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
711 CGGCTTACACATCCCGCCTATCTGGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
*
29116 CTTAGGCATACCGAGTTCATTCCTACTCTAAGATTAGATCAAACCGAGACTTACAGCAGCACGAT
776 CTTAGGCATACCGAGTTCATTCCTACTCTAACATTAGATCAAACCGAGACTTACAGCAGCACGAT
* * * * * *
29181 TGGTAGCACACAGGGGGGACCTGATCGATCCCTGGCTTGTGCATCCTGCCCC
841 CGATAGCACACAGGGGGGACCCGATCGATCCCTGACTTGCGCATCCTACCCC
* * * *
29233 TCTGGCCGACTGAGTGCCCGCAGGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
1 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
* *
29298 AGTCTAAGCATATGGAGTTCATTCCTACTGTAAGATCGGACAGGA-CTGAGGGTTGCGGGTGCAC
66 AGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGACAGGATC-GAGGGTTGCGGGTGCAC
* *
29362 ATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTCTTTTTTCGCCTGGGGCACCATCTCGGAGCAA
130 ATGCTGGGCTCAGGCATGTGCTGGTGCCGCATT-TTTTTTCGCTTGGGGCACCATCTCGGAGCAA
29427 CACCGAAGAACTTGACCGGCGGCATT-AGGGTTCCGACGATTGGGGGGCGG-GGGGTGTGCGCAC
194 CACCG-AGAAC-TGACCGGCGGCATTGA-GGTTCCGACGATTGGGGGGCGGAGGGGTGTGCGCAC
29490 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTTATCCCTCATCAAACCAT-
256 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCC-TATCCCTCATCAAACC-TC
* *
29553 GAGAACTCACATCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAG
319 GAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
29618 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAACATCCTGTACACTTCGAGTTTTTAGCTT
384 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
* * *
29683 AATTTTTTTGTGCACGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCC
449 AAGTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
29748 TTCTGAAAAAATTTTAAAAAAATCCTGAATCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
514 TTCTGAAAAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTAAAAAATCATGAAAAATAGAAAA
*
29813 CGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCA
579 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCA
29878 TAAAAATGGCATTGGCATGGCAAAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGAT
644 TAAAAATGGCATTGGCATGGCAAAAATATGAAGATGCACCTAAACCCACCTACCACCCT-TCGAT
** * * *
29943 CCACGGCTTGTACATCCCGTCTATCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTT-GATCGA
708 CCACGGCTTACACATCCCGCCTATCTGGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCG-TCGA
** * * * * * ** ** * * * *
30007 TTGGCTTAGGTGTACGGAGTTCATTCTTAGTCTAACATTGGATCAGAGGGAGGGTTGCGGTAGTA
772 TTGGCTTAGGCATACCGAGTTCATTCCTACTCTAACATTAGATCAAACCGAGACTTACAGCAGCA
* ** *
30072 GGATCGATAGCACGTAGGGGGGACCCGA-CTGATCCCTGACTTGCGTATCCTACCCC
837 CGATCGATAGCACACAGGGGGGACCCGATC-GATCCCTGACTTGCGCATCCTACCCC
* * * *
30128 TCTGGCCGGCTGAGCGCCCGGACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCG
1 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
* * * * * * *
30193 AGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTACGGGTGCAAA
66 AGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGACAGGATCGAGGGTTGCGGGTGCACA
* * * * * *
30258 TGCTGGGCTC-GAGCATGTGTTGGTGCCGTA-TTTTTTTCGCTTGAGGCACCGTCACCGGAGCAT
131 TGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTTTTCGCTTGGGGCACCATC-TCGGAGCAA
* * * *
30321 CGTCGGAGAACCTGACCGGCGGGATTGTGGTTCCGACGATTGGGGGG
194 C-ACCGAGAA-CTGACCGGCGGCATTGAGGTTCCGACGATTGGGGGG
30368 TGTTCCTTAA
Statistics
Matches: 997, Mismatches: 110, Indels: 47
0.86 0.10 0.04
Matches are distributed among these distances:
884 7 0.01
885 144 0.14
886 19 0.02
887 1 0.00
888 3 0.00
893 23 0.02
894 475 0.48
895 297 0.30
896 27 0.03
897 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCGGACAGGATCGAGGGTTGCGGGTGCACA
TGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTTGGGGCACCATCTCGGAGCAACA
CCGAGAACTGACCGGCGGCATTGAGGTTCCGACGATTGGGGGGCGGAGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAGTTTT
TTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
AAAATTTTAAAAAAATCCTGAACCATAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAAT
GGCATTGGCATGGCAAAAATATGAAGATGCACCTAAACCCACCTACCACCCTTCGATCCACGGCT
TACACATCCCGCCTATCTGGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
GCATACCGAGTTCATTCCTACTCTAACATTAGATCAAACCGAGACTTACAGCAGCACGATCGATA
GCACACAGGGGGGACCCGATCGATCCCTGACTTGCGCATCCTACCCC
Found at i:35749 original size:26 final size:26
Alignment explanation
Indices: 35713--35765 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
35703 CCAATCTGAT
35713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35765 C
1 C
35766 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36596 original size:26 final size:26
Alignment explanation
Indices: 36567--36619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36557 CCGATCCAAT
*
36567 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36593 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36619 C
1 C
36620 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:37281 original size:12 final size:12
Alignment explanation
Indices: 37264--37295 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
37254 TGAGGGATAG
37264 GGGGCCAATATA
1 GGGGCCAATATA
37276 GGGGCCAATATA
1 GGGGCCAATATA
*
37288 AGGGCCAA
1 GGGGCCAA
37296 GTACCAGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:37431 original size:178 final size:178
Alignment explanation
Indices: 37132--37461 Score: 570
Period size: 178 Copynumber: 1.9 Consensus size: 178
37122 AAACTCGAAG
*
37132 TGTACAGGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
1 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * ** *
37197 AGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTGCGGTTTGATGAGGGAT
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCCCGAGGTTTGATGAGGGAT
*
37262 AGGGGGCCAATATAGGGGCCAATATAAGGGCCAAGTACCAGTACCCAT
131 AGGGGGCCAATATAAGGGCCAATATAAGGGCCAAGTACCAGTACCCAT
* *
37310 TGTACAGGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGC
1 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
37375 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCCCGAGGTTTGATGAGGGAT
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCCCGAGGTTTGATGAGGGAT
*
37440 AGGGGGCCATTATAAGGGCCAA
131 AGGGGGCCAATATAAGGGCCAA
37462 GTACCAGCAC
Statistics
Matches: 142, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
178 142 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (178 bp):
TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAGTTCCCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAATATAAGGGCCAAGTACCAGTACCCAT
Found at i:37673 original size:26 final size:26
Alignment explanation
Indices: 37637--37688 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
37627 CATTCTGACA
*
37637 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
* *
37663 TTAGGCTGGGAAGGAACTCTGTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
37689 CTAAGCCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAGGAACTCCGTATGC
Found at i:38799 original size:902 final size:888
Alignment explanation
Indices: 32458--40203 Score: 7473
Period size: 865 Copynumber: 8.8 Consensus size: 888
32448 CATGACACCG
* * *
32458 TGGATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATA-TTTCTGTCGTGCCAATGCCATT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTC-GCCATGCCAATGCCATT
* *
32522 TTTATGG-TTGTAAATTTATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
32586 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGATTCGAGA-TTTTTTAAAATTTTTTC
130 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
*
32650 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGGCATGCACCAAA
195 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAA
* *
32714 CAATTCAGCTAAAAACGT-GAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
259 AAATTCAGCTAAAAAC-TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
32778 CATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGCGA
323 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
32843 GTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
388 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * *
32908 TCATGTGCGCACACCGCCCCGACCCCCTAATCGCTGGAACCCCAACGCCGCCAGTTAGGTTCTTT
453 TCATGTGTGCACACCCCCCCGCCCCCCCAATCG-TGGAACCCCAATGCCGTCGGTCAGGTTC--T
* * * ** * *
32973 GACGATGCTCCGGTGATGGTGCCCCGGGCAAAAAACAATATGGCACTAGCACATGCCCGAGCCCG
515 -CCG--G----AGTGATGGTGCCCC-GGCGAAAAA-AATGCGGCACCAGCACATGCCCGAGCCCA
33038 GCATGTGCAC-CTGCAA-CC-C--T-C-G---G-TC-----C---------ACTCCG-AT-CTTA
571 GCATGTGCACTC-GCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * **
33076 GACTAGG-AATGAACTCCGTATGCC-AAGTCAACCCACGAAATGAGCGTGCGGTTG-CTCAGCTG
635 GACT-GGCAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG--GACTCAGCCA
** * * * * * *
33138 GCCAGAGGGGCAGGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCTCAGCGTGCTACCGATCCTG
697 GCCAGAAAGGCAGGATGCGCAAGCCGGGAATCGCTCGGGTCCCCCTCAGCGTGCT-GCGATCCTA
** * * * ** * **
33203 CTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATAAACTCCACATGCCTAAGCCAACC
761 CTGCTGCAACCATCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*** * * * ** * ** **
33268 GGTGAAACGAGCGGGCGGGTAGGCGAGCATTACACCGGTCAGAGAGGCGGGATATGCAAGCTG
826 AACGAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
* *
33331 TGGATCGATAGGGTGGTATGTGGGTTTAGGTACATCTTCATA-TTTCTGCCATGCCAATGCCATT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTC-GCCATGCCAATGCCATT
*
33395 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCATGACGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
** * *
33460 CTCGTTTTCTATTTTTCATAATTTTTTAAACTTTTTACAGTTC-AGGATTTTTTTAAAATTTTTT
130 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTT
* ** *
33524 CAGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCATAAAA
194 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
33589 AAATTGAGCTAAAAACTCGAAGTGAACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
259 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
33654 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
324 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
33719 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCATAT
389 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
33784 CATGTGTGCACA--CCCCC-ACCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAAGTTCTCTG
454 CATGTGTGCACACCCCCCCGCCCCCCCAATCGT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * *
33846 ATGATGCTCCGACAATGGTGCCCCGGGCAAAAAAAAATGTGGCACTAGCTCATGCCTGAGCCCAG
518 --GA-G-T--G---ATGGTGCCCC-GGC-GAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
**
33911 CATGTGCAC-C-C-A----C-A---A--CC---C-T---C--GGTCTG-A-TCCG-AT-CTTAGA
572 CATGTGCACTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * **
33950 TTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCG-CTCAGCC-GAC
637 CTGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACG-G-GACTCAGCCAG-C
* * * * *
34013 CA-AAGGGGCAGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGTCGATCCTGC
699 CAGAA-AGGCAGGATGCGCAAGCCGGGAATCGCTCGGGTCCCCCTCAGCGTGCTG-CGATCCTAC
* ** * * * *
34077 TGCTGCAACCGTTGGTCTGGTTCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCA
762 TGCTGCAACCATCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA
* * *
34142 ACGAAACGAGCGGGCAGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCA
827 ACGAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
* * * * * * *
34204 TTGATCGATAGGGTGGTAGGTGGCTTTAGGGACATCTACGTA-TTCCTACCATGCCAATGCCATT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTC-GCCATGCCAATGCCATT
*
34268 TTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
**
34333 CTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
130 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
* * * *
34398 AGAAGGATTTTTGGCCCC--A------AGACGTAATCCTTGTATTTTTTTTGGCATGCATAAAAA
195 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
34455 AATTTAACTAAAAACTCGTAGTGTATAGGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCA
260 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
34520 GACACTTTAATGGCTACTAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
325 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
34585 TCTCAAGGTTTGATGAGGGACAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
390 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * ** *
34650 ATGTGCGCACACCCTCCCGGCCCCCTAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGA
455 ATGTGTGCACACCCCCCCGCCCCCCCAATC-GTGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-
* * * * *
34715 CGATGCTCCGGCGATGATGCCCCAGGCAAAAAAAAATGTGGCACCAGTACATGCCTGAGCCCAGC
518 -GA-G-T-----GATGGTGCCCC-GGC-GAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
34780 ATGTGCACCCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTTTGCTTAGAC
573 ATGTGCACTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * *
34845 TGGGAACGAACTCCGTATGGCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAG
638 TGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGG-ACTCAGCCAGCCAG
** * * * * * * * * * *
34910 AGGGGCAGAATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCAACATGCTACCGATCTTCCTGCC
702 AAAGGCAGGATGCGCAAGCCGGGAATCGCTCGGGTCCCCCTCAGCGTGCT-GCGATCCTACTGCT
* * * * * * *
34975 ACAACC--CAAGATCCGACCCGATCTTAGACTAGGAATGAACTCTGTATTCCTAAGCCAACCAAC
766 GCAACCATC-AG-TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC
* ** * ** * *
35038 GAAACAAGCGGGCGGGGGGGAGGGCACTACACCGGCTAGAGAGACGGGATGCGCAAGCCA
829 GAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
*
35098 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTACATA-TTTCTGCCATGCCAATGCCATT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTC-GCCATGCCAATGCCATT
* *
35162 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * ** * * *
35227 CTCATTTTCTATTTTTTACGATTTTCAAAATTTTTTACAGTTCGGGATTTTTTTAAAATTTTTTC
130 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
* * * * *
35292 -GAAAGGAGTTTCGGCCCCAAACTTGGAAGAAGTGATCCTTGTATTTTTGTTGGGATGCACACAA
195 AG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
35356 AAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
259 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
35421 AGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGGG
324 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
35486 TTCTCAAGGTTTGATGAGGGATGGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACAT
389 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** *** * * * *
35551 CATGTGCGCATAGCCCCCCGACCCCCCCAATCGCCAGAACTGTAATGTCGCCGATCAAGTTCTCT
454 CATGTGTGCACACCCCCCCG-CCCCCCCAATCG-TGGAACCCCAATGCCGTCGGTCAGGTTCTC-
* * * *
35616 GGCGATGCTCCGACGATGGTGGTCCGGGCGAAAAAAATGCGGCACCAGCACATG-CTGAAGCCCA
516 CG-GA-G-T-----GATGGT-GCCCCGGCGAAAAAAATGCGGCACCAGCACATGCCCG-AGCCCA
* * * * *
35680 GCATATGCAC-CGTAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
571 GCATGTGCACTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
35744 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAATACGAGCGTGCAGGCG-CTCAGCC-G
636 ACTGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAA-ACGAGCGTAC-GG-GACTCAGCCAG
** * *
35806 ACCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGCT-GGGT---CC-C--C---CT-CG------
698 -CCAGAAAGGCAGGATGCGCAAGCCGGGAATC-GCTCGGGTCCCCCTCAGCGTGCTGCGATCCTA
**
35854 --G-T-----C-T-A----G-TCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACC
761 CTGCTGCAACCATCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
35904 GACGAAACGA----GCGGGCAAGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCG
826 AACGAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
* *
35963 TGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACCATGCCAATGCCATT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTC-GCCATGCCAATGCCATT
* *
36027 TTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
36092 CTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCAAGATTTTTTAAAAATTTTTTC
130 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
* *
36157 AAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAA
195 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
36222 AATTCAGCTAAAAACTCGAAGTGTAAAGGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCA
260 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
36287 GACACTTTAATGGCTACTGGCAGAAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
325 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
36352 TCTCGAGGTTTGATGA-GGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
390 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *** * * * *
36415 ATGTGTGCAAAACCCCTTGGCCCCCCTAATCGTTGGAACCCTAATGCCGCCGGTCAGGTTCTTC-
455 ATGTGTGC-ACACCCCCCCGCCCCCCCAATCG-TGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
36479 GA-CGATGCTGGCTCGGGCGAAAAAAAATGCGAG-ACCAGCACATGCCCGAGCCCAGCATGTGCA
518 GAGTGATGGT-GCCCCGGCG-AAAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * * * * * *
36542 CCCGTAACCCTCGGTCC-GATCCAATCTTATACTGGGAATGAACTCCATATGCTTAGACTGGGAA
580 CTCGCAACCCTCGATCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAA
* * * * * * * **
36606 TGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCG-CTCAGTCGGCCTGAGGGG
644 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC-GG-GACTCAGCCAGCCAGAAAGG
* * *
36670 TAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCTGATCCTACTGCTGCAAC
707 CAGGATGCGCAAGCCGGGAATCGCTCGGGTCCCCCTCAGCGTGCTGC-GATCCTACTGCTGCAAC
* * * *
36735 CCTCAGACTGGTCCAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA
771 CATCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA
* * * *
36800 ACGGGCGGGC-GAGCGGGCACTACGTCGGCCAAAGATGCGGGATGCGCAAGCCG
836 GCGGGCGGGCAG-GCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
* *
36853 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCGCCATGCCAATGCCATTT
*
36918 TTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCATGTGAAGTTTCATGGCAAGACGAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
36983 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAAATTGTTTCA
131 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
* *
37048 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTT-GCATGCACAAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
37112 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAG
261 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
37177 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
37242 CTTGCGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAATATAAGGGCCAAGTACCAGTACC
391 CTCGAGGTTTGATGAGGGATA----G--------GGGGCCAATATAAGGGCCAAGTACCAGCACC
* * ** * * * * * * *** *
37307 CATTGTACAGGATTTTGTGCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACT
444 CATCG--CA-CATCATGTG------TG--CACA----CCCC---CCCGCCCCCCCAAT-CG---T
* *
37372 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGA-GTTC-CC-GAGGTTTGATG
487 -G--G--AACC--------C-C-AATGC-C------GTCG-GTCAGGTTCTCCGGA-G--TGATG
**** * *** ** ** * * * * * * *
37434 AG-GGATAGGGGGCCATTATAAGGGC-CAAGTACCA-GCACCCATTGCACATCATGTG--CGCAC
526 -GTGCCCCGGCGAAAAAAAT-GCGGCACCAGCA-CATGC-CCGA--GCCCAGCATGTGCACTCGC
* * *** * * ** * * **
37494 AACCCCCGAGCCCCCCCAATC---G--T-CG---GAAC-CCCAATGC-T-G-CCGGTC-AGGTTC
585 AACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG-CAATGAAC
* * * * * * *** * * *
37545 TCC-AACG-AT-GGTGC--CCCGGACGAAA-AAAAATACGGCAC-CAGCACATGCCCG--AGCCT
649 TCCGTATGCCTAAGT-CAACCC--ATGAAACGAGCGTACGGGACTCAGC-CA-GCCAGAAAGGC-
* * * * * * *** * **
37601 AGCATGTGCAA-CC-GTAA-CCCTC-GAT----C-CA---TTCTGAC-ATTAGACTG--GGAATG
708 AGGATGCGCAAGCCGGGAATCGCTCGGGTCCCCCTCAGCGTGCTG-CGATCCTACTGCTGCAACC
* * * * * * *
37651 A--ACTCCG-T---ATGCTTAGGCTGGGAAGGAACTCTGTATGCCTAAGCCAATCAACGAAACAA
772 ATCAGTCTGATCCAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA
* * * *
37710 GCGGACGGGCGGGCAGGCACTAAGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
836 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
* * **
37763 TGGATCGATAAGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTACCATGCCAATGCCATTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCGCCATGCCAATGCCATTT
* * * * * * *
37828 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCATGCGATGCTTCATGGTAGGACCAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
37893 TCGTTTTCTGTTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCA
131 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
* * *
37958 GAAGGAGTTTTGGCCCCAAACTTGGCA-ACCATGATCCTTGTATTTTTGTTGGCAGGCACAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
38022 AATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCACTTGAAAAAAGTGTCCCGATTTTA
260 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** *
38087 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTGAATACTCTTTAAGGGGGTGTGAGT
325 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
38152 TCTCGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCTCATC
390 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
38217 ATGTGTGTACACCCCCCCGGCCCCCCCAATCGCTGGAACCCCAACGCCGTCGGTTAGGTTCTCCG
455 ATGTGTGCACACCCCCCC-GCCCCCCCAATCG-TGGAACCCCAATGCCGTCGGTCAGGTTCTCC-
* * *
38282 GTGATGCTCCAGCAATGGTGCCCCAGGCGAAAAAAATTCGGCACGAGCACATGCCCGAGCCCAGT
517 G-GA-G-T---G--ATGGTGCCCC-GGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
*
38347 ATGTGCACTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTTGAC
573 ATGTGCACTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
38412 TGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGAGCTCAGCCAGCCAG
638 TGGCAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGA-CTCAGCCAGCCAG
* * ** * *
38477 AAAGGCAGGACGCACAAGCCGACAATCGGCT-GGGTCCCCCTCTA-TGTGCTGTCGATCCTTCTG
702 AAAGGCAGGATGCGCAAGCCGGGAATC-GCTCGGGTCCCCCTC-AGCGTGCTG-CGATCCTACTG
** * *
38540 CCACAACCATCGGTCTGATCCAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCAAC
764 CTGCAACCATCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC
*
38605 GAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
829 GAAACGAGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
38665 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCGCCATGCCAATGCCATTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCGCCATGCCAATGCCATTT
*
38730 TTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * * *
38795 TCGTTTTTTATTTTTAATGATTTTTGAAACATTTTATGGTTCGGGATTTTTTTAAAATTTTTTCA
131 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
*
38860 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATATTTT-TTGGCATGCAGAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAA
* *
38924 CATTCAGCTAAAAACTCGAAGTGTATAGGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
260 AATTCAGCTAAAAACTCGAAGTGTACAGGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
38989 AGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
324 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** ** *
39054 TTCTCAAGGACTGATGAGGGATAGGGGGTGAATATAAGGGCCATGTACCAGCACCCATCGCACAT
389 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * *
39119 CATGTGCACACACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATACCGTTGGTCAGGTTCTCC
454 CATGTGTGCACAC-CCCCCCGCCCCCCCAATCGT-GGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
39184 -G-GTGATGGTGCCCCGGGCAAAAACAAATGTGACACCAGCACATGCCTGAGCCCAGCA--TG--
517 GGAGTGATGGTGCCCC-GGCGAAAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
39243 -T-GC-ACCCTCG----A-TCCGATC-----C---------A------AT-CTTAGACTAGG-AA
580 CTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGCAA
* * * * *
39278 TGAACTCTGTATGCCTAAATGAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGCCA-AAGGGG
644 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGG-ACTCAGCCAGCCAGAA-AGG
* * * * * * * * *
39342 CAGGATGTGTAAGTCGGGGATCGATCAGGTCCCTCTCAGCGTGCTGCCGATCCTGCTACTGCAAC
707 CAGGATGCGCAAGCCGGGAATCGCTCGGGTCCCCCTCAGCGTGCTG-CGATCCTACTGCTGCAAC
* * * * *
39407 CTTCAGTTTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
771 CATCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGA
* * * *
39472 GCGGGCGGGCACGTGAGCACTACGTTGGCCAGAGAGGCGGGATGCGCAAGCCA
836 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
* * *
39525 TAGATCGATAGGGTGGTA-GTGAGTTTAGGGACATCTTCATA-TTTCTGCCATGCCAATGCCATT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTC-GCCATGCCAATGCCATT
* * *
39588 TTTATGGGTTGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
39653 CTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGATTC-ATGATTTTTTAAAAATTTTTT
130 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTT
*
39717 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGT-TTTCTTGTTGGCATGCACAAA
194 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAA
* * ** *
39781 AAAATTCAGCAAAAAACTCGAAGTGGACAGGATTTTGTGACCATTTGAAAAAACCGTCCCTATTT
258 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
39846 CAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
323 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
39911 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
388 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
39976 TCTTGTGCGTACA-CCCCCCG-TCCCCCAATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTTC
453 TCATGTGTGCACACCCCCCCGCCCCCCCAATCGT-GGAACCCCAATGCCGTCGGTCAGGTTCTCC
*
40039 -GA-TGATGGTGCCCCGGACGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCA
517 GGAGTGATGGTGCCCCGG-CG-AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * * * *
40102 CTCGTAGCCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAG
580 CTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAAT
* * *
40167 GAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCG
645 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
40204 GGGAGGCGGG
Statistics
Matches: 5789, Mismatches: 746, Indels: 661
0.80 0.10 0.09
Matches are distributed among these distances:
852 13 0.00
853 39 0.01
854 141 0.02
855 83 0.01
856 14 0.00
857 13 0.00
858 172 0.03
859 239 0.04
860 234 0.04
861 9 0.00
862 6 0.00
863 94 0.02
864 16 0.00
865 670 0.12
866 16 0.00
867 14 0.00
868 100 0.02
869 54 0.01
870 5 0.00
871 8 0.00
872 113 0.02
873 461 0.08
874 107 0.02
875 273 0.05
876 6 0.00
877 2 0.00
878 10 0.00
879 6 0.00
880 8 0.00
881 26 0.00
882 21 0.00
883 9 0.00
884 7 0.00
885 3 0.00
886 61 0.01
887 6 0.00
888 47 0.01
889 151 0.03
890 282 0.05
891 7 0.00
892 25 0.00
893 31 0.01
894 406 0.07
895 8 0.00
896 7 0.00
897 6 0.00
898 3 0.00
899 37 0.01
900 5 0.00
901 133 0.02
902 618 0.11
903 289 0.05
904 10 0.00
905 2 0.00
906 6 0.00
907 1 0.00
909 3 0.00
910 309 0.05
911 155 0.03
912 3 0.00
913 6 0.00
915 3 0.00
917 10 0.00
918 4 0.00
919 1 0.00
920 8 0.00
921 3 0.00
922 1 0.00
923 1 0.00
924 1 0.00
926 3 0.00
927 3 0.00
928 6 0.00
929 6 0.00
930 16 0.00
931 10 0.00
932 8 0.00
933 2 0.00
934 9 0.00
935 1 0.00
936 2 0.00
937 6 0.00
938 9 0.00
939 1 0.00
941 1 0.00
942 1 0.00
944 3 0.00
945 7 0.00
946 13 0.00
947 27 0.00
948 4 0.00
949 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCGCCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGTGCACACCCCCCCGCCCCCCCAATCGTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGAG
TGATGGTGCCCCGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGCA
ACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGACTCAGCCAGCCAGAAAGGCAGGATGCG
CAAGCCGGGAATCGCTCGGGTCCCCCTCAGCGTGCTGCGATCCTACTGCTGCAACCATCAGTCTG
ATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGC
AGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCA
Found at i:40163 original size:26 final size:26
Alignment explanation
Indices: 40127--40179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
40117 CCAGTCTGAT
*
40127 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
40153 CTTAGACTGGGAAGGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
40179 C
1 C
40180 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:40444 original size:730 final size:731
Alignment explanation
Indices: 39424--40769 Score: 2062
Period size: 730 Copynumber: 1.8 Consensus size: 731
39414 TTGATCCAAT
* * *
39424 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCACGTGAG
1 CTTAGACTGGGAAGGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCACGCGAG
* * * *
39489 CACTACGTTGGCCAGAGAGGCGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGTGAGTTTAGG
66 CACTACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATAGATCGATAAGGTGGTAGTGAGTTTAGG
* * *
39554 GACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAACGGTCCC
131 CACATCCTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCC
* *
39619 TTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCATTTTCTATTTTTCACAATTTTTGAAAC
196 TTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAAC
* *
39684 TTTTTGCGATTCATGATTTTTTAAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGA
261 TTTTTACGATTCAGGATTTTTTAAAAATTTTTTCAGAAAGG-GTTTTGGCCCCAAACTTGGTAG-
* * *
39748 C-CTGATCCTTGT-TTTCTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGGACAG
324 CTATGACCCTTGTATTT-TT-TTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGACAG
* * *
39811 GATTTTGTGACCATTTGAAAAAACCGTCCCTATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAACCGTCCCCATTTCAGACACGTTAATGGCTACTAGCAACAAAC
* * *
39876 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGG
452 CTGTAAAATCTCAAATACTCTTTAAAGGGGTGTGAGTTCTCAG-GGTTTGATGAGGGAAAGGGGG
* *
39940 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGTACA-CCCCCC-G-TCCCCC
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCTCCCAC
40002 AATCG-TCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGATGATGGTGCCCCGGACGAAAAAAAA
581 AATCGCT-GGAACCCCAATGCCGCCAGTCAGGTTCTTCGATGATGGTGCCCCGGACGAAAAAAAA
40066 TGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACTCGTAGCCCTCGATCCAGTCTGATCTTA
645 TGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACTCGTAGCCCTCGATCCAGTCTGATCTTA
40131 GACTGGGAATGAACTCCGTATG
710 GACTGGGAATGAACTCCGTATG
* ** *
40153 CTTAGACTGGGAAGGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGG-GAGGCGGGCGG
1 CTTAGACTGGGAAGGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCG-GGCACGCGA
* *
40217 GCACTACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTA
65 GCACTACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATAGATCGATAAGGTGGTA-GTGAGTTTA
* ** *
40282 GGCACATCCTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
129 GGCACATCCTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTC
* * **
40347 CCTTAAGCCTTCATGTGAAGCTTCATGGCAGGACGACTCATTTTCTGTTTTTCATGATTTTTGAA
194 CCTTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAA
* * *
40412 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAAGGGTTTTGGCCCCAAACTTGGTAG
259 ACTTTTTACGATTCAGGATTTTTTAAAAATTTTTTCAGAAAGGGTTTTGGCCCCAAACTTGGTAG
* *
40477 CTATGACCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
324 CTATGACCCTTGT-ATTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGACAGG
** *
40542 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGCAACAAACC
388 ATTTTGTGACCATTTGAAAAAACCGTCCCCATTTCAGACACGTTAATGGCTACTAGCAACAAACC
**
40607 TGTAAAATCTTGAATACTCTTTAAAGGGGTGTGAGTTCTCAGGGTTTGATGAGGGAAAGGGGGCC
453 TGTAAAATCTCAAATACTCTTTAAAGGGGTGTGAGTTCTCAGGGTTTGATGAGGGAAAGGGGGCC
* * *
40672 AATATAAGGGCCAAGTACCAGCATCCATCGCTCATCATGTGCGTACACCCCCCCGGCTCCCAGAA
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCTCCCACAA
* *
40737 TCGCTGGAACCTCAATGCCGCTAGTCAGGTTCT
583 TCGCTGGAACCCCAATGCCGCCAGTCAGGTTCT
40770 CTGGTGATGC
Statistics
Matches: 552, Mismatches: 54, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
728 1 0.00
729 106 0.19
730 392 0.71
731 13 0.02
732 4 0.01
733 35 0.06
734 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (731 bp):
CTTAGACTGGGAAGGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCACGCGAG
CACTACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATAGATCGATAAGGTGGTAGTGAGTTTAGG
CACATCCTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCC
TTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAAC
TTTTTACGATTCAGGATTTTTTAAAAATTTTTTCAGAAAGGGTTTTGGCCCCAAACTTGGTAGCT
ATGACCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGACAGGATT
TTGTGACCATTTGAAAAAACCGTCCCCATTTCAGACACGTTAATGGCTACTAGCAACAAACCTGT
AAAATCTCAAATACTCTTTAAAGGGGTGTGAGTTCTCAGGGTTTGATGAGGGAAAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCTCCCACAATCG
CTGGAACCCCAATGCCGCCAGTCAGGTTCTTCGATGATGGTGCCCCGGACGAAAAAAAATGCGGC
ACCAGCACATGCCCGAGCCTAGCATGTGCACTCGTAGCCCTCGATCCAGTCTGATCTTAGACTGG
GAATGAACTCCGTATG
Found at i:40908 original size:23 final size:25
Alignment explanation
Indices: 40866--40913 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
40856 TGGTCCGGAT
40866 CTTTAGACTGGGATGAACTC-CGTA
1 CTTTAGACTGGGATGAACTCTCGTA
40890 CTTT-GACTGGGAATG-ACTCTCGTA
1 CTTTAGACTGGG-ATGAACTCTCGTA
40914 TGCTATAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (25 bp):
CTTTAGACTGGGATGAACTCTCGTA
Found at i:40951 original size:730 final size:725
Alignment explanation
Indices: 39424--40940 Score: 1961
Period size: 730 Copynumber: 2.1 Consensus size: 725
39414 TTGATCCAAT
* * * * * *
39424 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-G-GGCGGGCACGTG
1 CTTAGACTGGGAAGGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGGAGGC-GG--CG-G
* * * *
39487 AGCACTACGTTGGCCAGAGAGGCGGGATGCGCAAGCCATAGATCGATAGGGTGGTAGTGAGTTTA
62 -GCACTACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATAGATCGATAAGGTGGTAGTGAGTTTA
* * *
39552 GGGACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGGTTGTAAATTCATACAACGGTC
126 GGCACATCCTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTC
* *
39617 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAGGACTCATTTTCTATTTTTCACAATTTTTGAA
191 CCTTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAA
* *
39682 ACTTTTTGCGATTCATGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
256 ACTTTTTACGATTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
39747 ACCTGATCCTTGTTTTCTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGGACAGG
321 ACATGACCCTTGTTTTCTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGACAGG
* * *
39812 ATTTTGTGACCATTTGAAAAAACCGTCCCTATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
386 ATTTTGTGACCATTTGAAAAAACCGTCCCCATTTCAGACACGTTAATGGCTACTAGCAACAAACC
* * *
39877 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
451 TGTAAAATCTCAAATACTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCC
* *
39942 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGTACACCCCCCGTCCCCCAATCG
516 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGTCCCACAATCG
40007 TCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGATGATGGTGCCCCGGACGAAAAAAAATGCGGC
581 TCGGAACCCCAATGCCGCCAGTCAGGTTCTTCGATGATGGTGCCCCGGACGAAAAAAAATGCGGC
* ** * * * *
40072 ACCAGCACATGCCCGAGCCTAGCATGTGCACTCGTAGCCCTCGATCCAGTCTGATCTTAGACTGG
646 ACCAGAACATGCCCGAGCCTAGCATGTGCACTCCAAACCCTCAATACAGTCGGATCTTAGACTGG
40137 GAATGAACTCCGTATG
711 GAATGAACTCCGTA-G
* * *
40153 CTTAGACTGGGAAGGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGGAGGCGGGCGGG
1 CTTAGACTGGGAAGGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGC--GGAGGC-GGCGGG
* *
40218 CACTACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAG
63 CACTACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATAGATCGATAAGGTGGTA-GTGAGTTTAG
* ** *
40283 GCACATCCTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
127 GCACATCCTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCC
* * **
40348 CTTAAGCCTTCATGTGAAGCTTCATGGCAGGACGACTCATTTTCTGTTTTTCATGATTTTTGAAA
192 CTTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAA
* * *
40413 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAAGG-GTTTTGGCCCCAAACTTGGTAG
257 CTTTTTACGATTCAGGATTTTTTAAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAG
* *
40477 -CTATGACCCTTGTAATTT-TT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
321 AC-ATGACCCTTGT--TTTCTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGAC
** *
40539 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGCAACAA
383 AGGATTTTGTGACCATTTGAAAAAACCGTCCCCATTTCAGACACGTTAATGGCTACTAGCAACAA
**
40604 ACCTGTAAAATCTTGAATACTCTTTAAAGGGGTGTGAGTTCTC-AGGGTTTGATGAGGGAAAGGG
448 ACCTGTAAAATCTCAAATACTCTTTAAAGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGAAAGGG
* *
40668 GGCCAATATAAGGGCCAAGTACCAGCATCCATCGCTCATCATGTGCGTACACCCCCCCGGCTCCC
512 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCC-G-TCCC
* * * * * * **
40733 AGAATCG-CTGGAACCTCAATGCCGCTAGTCAGGTTCTCTGGTGATGCTCCAGCGATGGCTTGG-
574 ACAATCGTC-GGAACCCCAATGCCGCCAGTCAGGTTCT-T--CGATGAT---G-G-TGCCCCGGA
* **
40796 CGAAAAAAAATGCGGCA-CAGAACATGCCCGAG-CTCAGTATGTGCAC-CCAAACCCTCAATATG
630 CGAAAAAAAATGCGGCACCAGAACATGCCCGAGCCT-AGCATGTGCACTCCAAACCCTCAATACA
40858 GTCCGGATCTTTAGACTGGG-ATGAACTCCGTA-
694 GT-CGGATC-TTAGACTGGGAATGAACTCCGTAG
* * *
40890 CTTTGACTGGGAATG-ACTCTCGTATG-CTATAG-TAACCCACGAAACAAGCGG
1 CTTAGACTGGGAAGGAACTCT-GTATGCCTA-AGCCAACCCACGAAACAAGCGG
40941 TCGCGGGCAC
Statistics
Matches: 690, Mismatches: 71, Indels: 49
0.85 0.09 0.06
Matches are distributed among these distances:
729 99 0.14
730 393 0.57
731 14 0.02
732 6 0.01
733 41 0.06
734 3 0.00
736 26 0.04
737 20 0.03
738 13 0.02
739 42 0.06
740 28 0.04
741 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (725 bp):
CTTAGACTGGGAAGGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGGAGGCGGCGGGCAC
TACGTCGCCCAAAGAGGCGGGATGCGCAAGCCATAGATCGATAAGGTGGTAGTGAGTTTAGGCAC
ATCCTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTA
AGCCTTCATGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTT
TTACGATTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ACCCTTGTTTTCTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGACAGGATTTT
GTGACCATTTGAAAAAACCGTCCCCATTTCAGACACGTTAATGGCTACTAGCAACAAACCTGTAA
AATCTCAAATACTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGTCCCACAATCGTCGGA
ACCCCAATGCCGCCAGTCAGGTTCTTCGATGATGGTGCCCCGGACGAAAAAAAATGCGGCACCAG
AACATGCCCGAGCCTAGCATGTGCACTCCAAACCCTCAATACAGTCGGATCTTAGACTGGGAATG
AACTCCGTAG
Found at i:42491 original size:691 final size:686
Alignment explanation
Indices: 41042--42492 Score: 1945
Period size: 691 Copynumber: 2.1 Consensus size: 686
41032 CCGTCGGTCT
41042 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGG
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGG
* * * * *
41107 CACTACACCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTGG
66 CACTACACCGGCCAGAAAGACGGGATGCACAAGCCGTAGATCAATAAGGTGGTAGGTGGGTTTAG
*
41172 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCC
* *
41237 CTTAAGCCTTAATGTGAATTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTCAAA
* * * *
41302 CTTTTTACGGTTCGAGATTTTTTTTAAAATTTTCCAGAAAGATTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGAGATTTTTTGTAAAATTTTCCAGAAAGAGTTTTGGCCCCAAACTTCGTACA
* * * *
41367 CATGATCCTTGTTTTTTTGTTGGCATGCACAAAAACATTTCGCTAAAAACTCAAAATGTACAAGA
326 CATGATCCTTGTTTTTTTGTTGGCACGCACAAAAAAATTTAGCTAAAAACTCAAAATATACAAGA
41432 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* **
41497 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGACTGATGAGGGATAGGGGGCCA
* ** *
41562 ATATAAGGGCCAAGTACCCGAACCCATCGCACATCATGTGCGTGCACCCCCCCAATCGCCGGAAC
521 ATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCAACCGCCGGAAC
41627 CCCAATGCCGTCGGTCAGGTTCTCCAGCGATAGTGCCCCGGGCAAAAAAAAATGCAGCACCAGCA
586 CCCAATGCCGTCGGTCAGGTTCTCCAGCGATAGTGCCCCGGGCAAAAAAAAATGCAGCACCAGCA
* *
41692 TATGACCGAGCCCAGCATCTGCACCCGCAACCCTTGATCC
651 CATGACCGAGCCCAGCA-CTG---CCGCAACCCTCGATCC
* * * *
41732 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAAGGGCGG
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGGGCGG
** * * * * * * *
41797 GCACTACGTCGTCTAGAAAGACGTGTTGCGCATGCCGTAGATCGATAAGGTGGTAGGTGGGTTTA
65 GCACTACACCGGCCAGAAAGACGGGATGCACAAGCCGTAGATCAATAAGGTGGTAGGTGGGTTTA
* ** **
41862 GGCACATCTTCATATTTTTGCTGTGCCAATGCTGTTTTTATGGCCTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTC
* * * * *
41927 CTTTACGCCTTCATGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATGA-TTTTCAA
195 CCTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTCAA
* *
41991 GACTTTTT-CTGGTTC-AGGA-TTTTTGTAAAATTTTTTCA-AAAGGAGTTTTGGCCCCAATCTT
260 -ACTTTTTAC-GGTTCGA-GATTTTTTGTAAAA-TTTTCCAGAAA-GAGTTTTGGCCCCAAACTT
* * * *
42052 CGTACACGTGATCCTTGTATTTTTT-TTGGCACGCATAAAAAAATTTAGCTAAAAACTCGAAGTA
320 CGTACACATGATCCTTGT-TTTTTTGTTGGCACGCACAAAAAAATTTAGCTAAAAACTCAAAATA
* *
42116 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
42181 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGACTGATGAGGGATAG
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGACTGATGAGGGATAG
** * *
42246 GGGGTGAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGCCC
514 GGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCG--CACA-------CCC
* * * *
42311 CCCCAACCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGGTGATGGTGCCCCGGGC-AAAAA
570 CCCCAACCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATAGTGCCCCGGGCAAAAAA
* *
42375 AAATG-TGACACCAGCACATG-CCTGAGCCCAGCA-TG-TGC-ACCCTCGATCC
635 AAATGCAG-CACCAGCACATGACC-GAGCCCAGCACTGCCGCAACCCTCGATCC
* * *** * **
42424 GATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAATGAACCCATGAAACGAGCGTTCGGG
1 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGG
42489 CACT
66 CACT
42493 CAGCCAGCCA
Statistics
Matches: 664, Mismatches: 79, Indels: 35
0.85 0.10 0.04
Matches are distributed among these distances:
690 75 0.11
691 428 0.64
692 64 0.10
693 4 0.01
697 2 0.00
698 3 0.00
699 31 0.05
700 57 0.09
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (686 bp):
GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGG
CACTACACCGGCCAGAAAGACGGGATGCACAAGCCGTAGATCAATAAGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCC
CTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTCAAA
CTTTTTACGGTTCGAGATTTTTTGTAAAATTTTCCAGAAAGAGTTTTGGCCCCAAACTTCGTACA
CATGATCCTTGTTTTTTTGTTGGCACGCACAAAAAAATTTAGCTAAAAACTCAAAATATACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGACTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCAACCGCCGGAAC
CCCAATGCCGTCGGTCAGGTTCTCCAGCGATAGTGCCCCGGGCAAAAAAAAATGCAGCACCAGCA
CATGACCGAGCCCAGCACTGCCGCAACCCTCGATCC
Found at i:43323 original size:26 final size:26
Alignment explanation
Indices: 43294--43346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
43284 CCGGTCTGAT
*
43294 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
43320 CTTAGACTGGGAAGGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
43346 C
1 C
43347 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:46496 original size:26 final size:26
Alignment explanation
Indices: 46467--46519 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
46457 CCGGTCTGAT
*
46467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
46493 CTTAGACTGGGAAGGAACTCTGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
46519 C
1 C
46520 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:48690 original size:11 final size:11
Alignment explanation
Indices: 48670--48701 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
48660 CGGTTAGGTT
*
48670 CTCCGACGATG
1 CTCCGGCGATG
48681 CTCCGGCGATG
1 CTCCGGCGATG
48692 CTCCGGCGAT
1 CTCCGGCGAT
48702 AGTGCCCCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.38, G:0.31, T:0.19
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:49334 original size:26 final size:26
Alignment explanation
Indices: 49305--49357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
49295 CTGGTCCGAT
49305 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
49331 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
49357 C
1 C
49358 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:52264 original size:878 final size:883
Alignment explanation
Indices: 48710--54326 Score: 6872
Period size: 878 Copynumber: 6.3 Consensus size: 883
48700 ATAGTGCCCC
* **
48710 GGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* **
48775 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCAAAAT
66 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * *
48840 TTTT-GAACTTTTTTACAGTTTCG-GATTTTTTAAAAAATTTTTCAGAAGGAGTTTTGGCCCCAA
131 TTTTAAAAC-TTTTTAC-GGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
** * *
48903 ACTTGGTAGAAATGATCCTTGTATCTTTT-TTGGTATGCAAAAAACAATTCAGCTAAAAACTCGA
194 ACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGA
* * * *
48967 AATGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTGAATGGCTACTG
258 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
49032 ACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAT-ATTTCTCAAGGTTTGATGAGG
323 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGATGAGG
** ** * *
49096 GATACCGGGCCAATATAAGGGCCAAGTACCAGCATGCATCGCATATCATGTGCACACACCCCCC-
387 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA
** * ** * * **
49160 GGCCTCCCCAATCACCGGAACCCCAAAGCCATCGATCAAG-TTCTCCGGTGATGCTCTTGCGATG
452 GGCC-CCCCAATCGTCGGAACCCCAATGCCGCCGGTC-AGTTTCTCCGATGATGCTCCGGCGATG
* * * *
49224 GTGCCCCGGGTGAAAAAAAATGTGGCACCAGCACATACCCGAGCCCAGCATGTGCACCCGCAACC
515 GTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACC
*
49289 CTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGT
580 CTCA-TC--GT--G---TT---CT--G---G-A-TCCG-ATGCTTAGACTGGGAATGAACTCCGT
* * ** * ** *
49354 ATGCCCAAGTCAACCCACGAAACGAGCGTGTAGGCACTCAGCCAACCAGAGGGGCAGGATGAGCA
626 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * **
49419 AGCCAGGGATCGGTCAGGTCCCCCTCTA-TGTGCTGTTGATCCTGCTGCCATAACCCTCGGTCTG
691 AGCCTGGGATCGGTCGGGTCCCCCTC-AGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTG
* * * *
49483 GTTCGATCTTAGACTGGGAATGAAGTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGC-AGG
755 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA-G
* *
49547 CGGGCTGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
819 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
49612 GGATTTAGGCACATCTTCATATTTCTGCCATGGCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
49677 ATTGGTCCCTTCAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAATGAT
66 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
49742 TTTTGAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
131 TTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
* *
49807 TTGGTAGACGTGAACCTTGTATATTTT-TTGGCATGCACAAAA-ACATTCAGCTAAAAACTTGAA
196 TTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAACA-ATTCAGCTAAAAACTCGAA
49870 GTGTACAGGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
259 GTGTACAGGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
49935 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAAGTTTGATGAGGG
323 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
50000 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCA-
388 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG
* * * * *
50064 CCCCCCCAATCGTCGGAACCCCAAT---G-CGTTCAG----T-C-A-GGTTCTCCGACGATGGTG
453 GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGTTTCTCCGATGATGCTCCGGCGATGGTG
* * * *
50118 CCCC-CGC-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATATGCACCCGCAACCCTC
518 CCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTC
**
50181 AATCCAGTCTGATCTTTGACTGCTAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATG
583 -AT-C-G--TG----TT--CTG-----G-A--TCCGATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
50246 CCTAACTCAATCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGGATGTGCAAGT
629 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
** * * * * * * *
50311 CAAGGATCGATCGGGTTCCCCTCAGTGTGCTGTCGATCCTACTACTGCAACCTTTGGTCTGGTCC
694 CTGGGATCGGTCGGGTCCCCCTCAGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCC
*
50376 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GA-CGGGC
759 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGC
* * * * * *
50437 GGGCACTATGCTGGCTAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGT
824 GGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
50497 GGGTTTAGGTACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
50562 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGAT
66 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
50627 TTTTAAAACTTTTTACGATTC-AGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGG-CCCAAA
131 TTTTAAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * *
50690 CTTGGCAGACGTGATCCTTGTATTTTTGTTGGTATGCAAAAAACAATTCAGCTAAAAACTCGAAG
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAG
50755 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
260 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
50820 AGCAAACCTGTAAAATCTCAAACGCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
325 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
50885 AGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCGCA-CCCCCTGGC
390 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGG-
* * *
50949 CCCCCCAATCATCGGAACCCCAATGCTGCCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGC
454 CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGTTTCTCCGATGATGCTCCGGCGATGGTGC
* * * **
51014 CCAGGGTGAAAAAAAA--CGGCACGAGCACATGCCCAAGCCCAGCATGTGCACCTACAA-CC-C-
519 CCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCA
* * * *
51074 TCG-G-TC-CGATCCGAT-CTTAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCATGAAAT
584 TCGTGTTCTGGATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
* * * * * *
51135 GAGCGTGCGGGCGCTCAGCCGGCCAGAGTGGTATGATACGCAAGAC-GAGGATCGATCGGGTCCC
649 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCTG-GGATCGGTCGGGTCCC
** * *** * *
51199 CCTCAGTGTGCTGTCGATCCTGCTGTTGCAACCATCGGTCCAATCTGATCTTAGACTGCGAATGA
713 CCTCAGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * * * * * * * * *
51264 ACTTCGTATGCCTAAGCCAATCGATGAAATGATCGGGCGGGAGGGCGGCCACTATGCCAGCCAGA
778 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGA
* * * *
51329 GAGGCAGGTTACGTAAGCCGTGGATCGATAGGGTGGTAGGT
843 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
51370 GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
51435 AATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGTCGACTCGTTTTCTATTTTTCATGAT
66 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
51500 TTTCAAAACTTTTTACGATTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
131 TTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
** * *
51565 TTTATAGACGTGATCATTGTATTTTTATTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
196 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
* *
51630 GTACAGGATTTTGTGTCCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
261 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
51695 GCAAACCTGTAAAATCTCAAATGTTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
326 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
51760 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCACACACCCCCCCAGGC
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGGC
* * * * * * *
51825 CCCCCAATCGCCAGAACCCCAATGCCGTCGGTTAGTTTCTCCGTTGATGCTCTGGCAATGGTGCC
455 CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGTTTCTCCGATGATGCTCCGGCGATGGTGCC
* * *
51890 CCGGGCGAAAAAAAAATGCGGCACCAGCACATGCCTAAGCCCAGCATATACACCCGC-ACCC-C-
520 CCGGGCG-AAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCA
** *
51952 TCG-G-TCTGG-TCCGAT-CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAAT
584 TCGTGTTCTGGATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
* * * *
52013 GGGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCTGGGATCGG-CTTGGTCCC
649 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCTGGGATCGGTC-GGGTCCC
* * * ** *
52077 CCTCAGTGTGCTGTCGATCCTGCTACCACAACCTTCGGTCCAGTCCGATCTTAGACTGCGAATGA
713 CCTCAGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * * * * *
52142 AGTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGATCGGGCGGGCACTACGCCGTCTAGA
778 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGA
*
52207 GAGGCGGGATGCGCAAGCCCTGGATCGATAGGGTGGTAGGT
843 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
52248 GGGTTTAGGTACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
1 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
52313 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGAT
66 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
52378 TTTTGAAACTTTTTATGGTTCGAAATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
131 TTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
** * *
52443 TTGGTAGACAAGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAATCTAAGT
196 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
*
52508 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCA
261 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
52573 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTCAGTGAGTGAT
326 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGAT
* *
52637 AGGGGGCCAATATAAGGGCCAAGTACCAAG-ACCCACCG-AGCATCATGTGCGCACA-CCCCCTG
390 AGGGGGCCAATATAAGGGCCAAGTACC-AGCACCCATCGCA-CATCATGTGCGCACACCCCCCAG
* * ** * * *
52699 GCCCCCCAATCGTCGGAACTCCAATGCCACCAATCAGTTTCTCCGGTGATACTCCGACGATGGTG
453 GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGTTTCTCCGATGATGCTCCGGCGATGGTG
* * *
52764 CCACGGGCGAAAAAAAATACAGCACCAGCACATGCCCAAG-CCAGCATGTGCACCCGCAACCCTC
518 CCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTC
52828 GATCCGATTCGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
583 -AT-CG--T-G---TT---CT-GG-----A-TCCG-ATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
52893 CCTAAGTTAACCCACGAAACGAGCGCGTGGGCACTCAGTCGGCCAGAGGGGAAGGATGCGCAAG-
629 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * *
52957 CTGGGGATCGGTCGGGTCACCCTCAGTGTGCTATCAATCCTGCTGTCC-CAACCCTCGGTCTGGT
694 CT-GGGATCGGTCGGGTCCCCCTCAGTGTGCTGTCGATCCTGCTG-CCGCAACCCTCGGTCTGGT
* * * * * *
53021 CTGATCTTAGACTGGGAAAGAACTCCGTATGCCTAGGCCAACCGACGAAACAAGTGGGCGGGCGG
757 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGG
* * * *
53086 GCGGGCACTGCACCGGCTAGAGACGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
822 GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
53148 GGGTTTAGGCACATTTTCATATTTCTGCGATGCCAA-CCCTATTTTTAT-G---G---ATTCATA
1 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC-ATTTTTATGGCTTGTAAATTCATA
*
53205 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCATGA
65 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** * *
53270 TTTCCAAAACTTTTTAAGGTTCGAGATTTTTTTCAAACTTTTTT-AGAAGGAGTTTTGGCCCCAA
130 TTTTTAAAACTTTTTACGGTTCGAGATTTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * * *
53334 ACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGC-CTAAAAAAAATCAGCTAAAAATTCGA
194 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAACAATTCAGCTAAAAACTCGA
* **
53398 AGTGTACAGAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTTTG
258 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
53463 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGG
323 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
53528 ACAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG
388 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG
* * * * ** *
53593 CCCCCCCAATCTTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGACAATGCTCCGGTGATGGTG
453 GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGTTTCTCCGATGATGCTCCGGCGATGGTG
* * * * ** * * *
53658 GCTCGGGTGAAAATAAATATGGCACCAGCACATGCTCAAGCCCAGCATGTGCACCTGTAACCCTC
518 CCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAA-CC-C
* * * * *
53723 GGTCTGATCCAATCTTAGTCTGGGAATGATCGCCATATGCTTAGATTGGTAATGAACTCCGTATG
581 --TC--AT-C-GT-GT--TCT--G---GAT--CC-GATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
53788 CCTAAGTGAACCCACGAAATGAGAGTGCGGGTGCAT-AGCCGGCCAGAGGGGTAGGATGCGCAGG
629 CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC-TCAGCCGGCCAGAGGGGCAGGATGCGCAAG
** * * * * * * *
53852 CCTGGGATCGACCGGGTCCCCCTCAGCGTTCT-ACTAATCCTACTGCTGCAACCCTCAGTCTGGT
693 CCTGGGATCGGTCGGGTCCCCCTCAGTGTGCTGTC-GATCCTGCTGCCGCAACCCTCGGTCTGGT
* * * *
53916 CTGATCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
757 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGG
* * *
53981 GCGGGCACTATGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
822 GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
54043 GGGTTTAGGCACATCTTCATGTTTTTGCCACGCCAATGCCATTTTTTTTGGCTTCTAAATTCATA
1 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATA
* *
54108 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
65 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * *
54173 TTTTTGAAACTTTTTACGGTTTGAGA-TTTTTTGAAATTTTTTCAGAAGGAGTTTTGGCCCGAAA
130 TTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * *
54237 CTTGGTACACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACACGAAG
195 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAG
54302 TGTACAGGATTTTGTGACCATTTGA
260 TGTACAGGATTTTGTGACCATTTGA
54327 TGAGGGATAA
Statistics
Matches: 4121, Mismatches: 474, Indels: 240
0.85 0.10 0.05
Matches are distributed among these distances:
869 180 0.04
870 4 0.00
871 1 0.00
872 2 0.00
873 231 0.06
874 254 0.06
875 93 0.02
876 82 0.02
877 6 0.00
878 693 0.17
879 7 0.00
881 1 0.00
882 5 0.00
883 173 0.04
884 92 0.02
885 233 0.06
886 1 0.00
887 5 0.00
888 7 0.00
889 245 0.06
890 10 0.00
891 21 0.01
892 4 0.00
893 345 0.08
894 110 0.03
895 347 0.08
896 18 0.00
897 12 0.00
898 9 0.00
899 12 0.00
900 282 0.07
901 17 0.00
902 357 0.09
903 262 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (883 bp):
GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
TTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCC
CCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGTTTCTCCGATGATGCTCCGGCGATGGTGCCC
CGGGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCATC
GTGTTCTGGATCCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCTGGGATCGGTCGGGTCCCCCT
CAGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAG
GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
Found at i:52870 original size:26 final size:26
Alignment explanation
Indices: 52841--52893 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
52831 CCGATTCGAT
52841 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
52867 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
52893 C
1 C
52894 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:54569 original size:26 final size:26
Alignment explanation
Indices: 54540--54592 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
54530 CCGATCCGAT
*
54540 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
54566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
54592 C
1 C
54593 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:55468 original size:26 final size:26
Alignment explanation
Indices: 55424--55473 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
55414 CTGGTCTGAT
55424 CTTAGACTGGAAATAAACTCCGTACG
1 CTTAGACTGGAAATAAACTCCGTACG
* *
55450 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGAAATAAACTCCGTA
55474 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTACG
Found at i:57192 original size:26 final size:26
Alignment explanation
Indices: 57161--57211 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
57151 CGGTCCGATC
* * *
57161 TTAGACTGGGAATGATCTCCGTATGG
1 TTAGACTAGGAATGAACTCCATATGG
*
57187 TTAGACTATGAATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
57212 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGG
Found at i:58085 original size:26 final size:26
Alignment explanation
Indices: 58049--58098 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
58039 CTGATCTGAT
*
58049 CTTAGATTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
58075 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
58099 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:59859 original size:26 final size:26
Alignment explanation
Indices: 59823--59875 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
59813 CCGGTCCGAT
59823 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
59849 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
59875 C
1 C
59876 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:60072 original size:889 final size:888
Alignment explanation
Indices: 54454--62262 Score: 8930
Period size: 889 Copynumber: 8.9 Consensus size: 888
54444 GATGCTTCGA
* * * ** * *
54454 CGATGGTGGCTCAGGCAAAAAAAAATGTGGCACCAGCACATGCCCGTGCCCAGCATGTGCACCCG
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
* * * *
54519 TAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
66 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * * *
54584 TCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGTGCTCAGCCAACTAGAGGGACAGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGAT
* * * ** * * * * *
54649 GAGTAAGCC---GA------GGATCAACAT--GC-TG-TA--GATCCTACTTCCACAACCCTC-G
196 GCGCAAGCCGGAGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATCCTGCTACTACAACCATCAG
*
54698 ATCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
261 -TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * **
54763 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGTAGGATGCGCAAGCCGTGGATCGATAGGGTGGT
325 CAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
54828 AGGTGGGTTT-GGCACATCTTCATATTTTTACCATGCCAATGCTATTTTTATGGCTTATAAATTC
390 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
54892 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACTCAG-TTTCTATTTTTA
455 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTC
* ** * * * *
54956 ATGATTTTTGAAACATTTTACGGTTCAAGATTTTTTAAAAAATTTTTCAAAAGGAGTTTTAGCCC
519 ATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
** * *
55021 CAAACTTTATAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTC
584 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
55086 GAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
649 GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
55151 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* * *
55216 GGATAGGGGGCCAATATGAGGGCCAAGTACC-GACACCCATCACACATCTTGTGCGCACACCCC-
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCT
* * * *
55279 CCCGCCCCCCAATCGTC-GAACCCCAATGCTGTCGACCAGGTTCTCCGATGATGCTTCGG
843 CCCG---CCCAATCATCGGAACCCCAATGC---CG-CC-GG---T-C-A-GGTTCTCCGG
* * * * * * * * *
55338 CGATGGTGGCTCAGGCAAAAAAAAATGCAGTACCAGCACATGACCAAGCCCAGCATGTGCACCCG
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
* * * * *
55403 CAACCCTC-AGTCTGGTCTGATCTTAGACTGGAAATAAACTCCGTACGCTTAGACTGGGAATGAA
66 CAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
55467 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCTAAAGGGGCAGGA
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGA
* * * * * * * * *
55532 TGTGCAAGTC-GATGATCAGCCGGGTCCCCCTCTA-AGTGCTATTGATCCTGCTACCACAGCCCT
195 TGCGCAAGCCGGA-GATCGGTCGGGTCCCCCTC-AGCGTGCTACTGATCCTGCTACTACAACCAT
* ** * * *
55595 CGGTCTGGTTTGATCTTAGGCGGGGAATGAACTCCGTATGCCTAGGCCAACCGACGAAACGAGCG
258 CAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * *
55660 GAC-GAACGGGCAGGCACTACG-CTGGCCAGAGAGGCGGGATGCGGAAGCCGTGCATCGATAAGG
323 GGCAG-GCGGGCGGGCACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
* *
55723 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTTTGGCTTGTAA
386 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
*
55788 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCTAGACGA--C----TC-A-TT
451 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
55845 TTC-T-ATTTTT----C-----ACGATTTGGGATATTTTTAAAATTTTTTCAGAAGGAGTTTTGG
516 TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
** * * * * *
55899 AACCAAACTTGCTAGACGTGATCCTTATATTTTTTTTTGCATGCACAAAAACATTCAGCTAAAAA
581 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
55964 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGT
646 CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
56029 TACAGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGATTTGAT
711 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * * **
56094 GAGGGATAGGGGGCCAATATAAGGGCCAAGTTCTAGCTCCCATCGCACATCATGCACGCACACCC
776 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--C
* * ** * * *
56159 CCCGGCCACCCCCAATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCTGG
839 CCC-TCC-CGCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * *
56211 CGATGGT-GCCCTGGGCGAAAAGAAATACGGCACCGGCACATGCCTGAGCCCAGTATGTGGACCC
1 CGATGGTGGCCC-GGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
** * *
56275 GTAA-CC-C--T-C-G---G----T---CT----A-G---TCC-AAT-CTTAGATTGGGAATGAA
65 ACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
56314 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGTGCAAGA
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGA
* * * * * *
56379 TGCGCAAGTCGGGGATCGATCGAGTCCCCCTCAGCGTGCTACGGATACTGCTA-TCACAACCATC
195 TGCGCAAGCCGGAGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATCCTGCTACT-ACAACCATC
* * ** * * *
56443 TGTCTGATATGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGG
259 AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
56508 GCGGGTGGGCGGGCACTACGTCGGACAAAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGG
324 GCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * * **
56573 CAGGTGGGTTTGGGTACATCTTCATATTTCTACTGTGCCAATGCCATTTTTATGGCTTGTAAATT
389 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
56638 CACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
454 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * ** * * *
56703 ACGATTTTCGAAACTTTTTACGGTTC-AAATTTTTTTAAAATTTTTTCAAAATGAGTTTTGGCCT
519 ATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
56767 CAAATTTGGTAGATGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTT
584 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
56831 GAAGTGTACAGGATTTTGTAACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
649 GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * *
56896 TGGCAGCAAACTTGAAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAATGTTTGATGGG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* * * * *
56961 GGAAAAGGGGCTAATATAAGGGCCAAGTGCCAACACCCATCGCACATCATGTGCGCACACCCCTC
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC
** * * **
57026 CCGCCCCCCAATCGCCGGAACCCCAATGTCGCCGGTCAGGTTATTTGG
844 CCG---CCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * ** *
57074 CGTTGGTGGCCCGGACGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCGA-GTGCACCC
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGC-ATGTGCACCC
** * * * **
57138 ACAACTGTCGGTCCGGTCCGATCTTAGACTGGGAATGATCTCCGTATGGTTAGACTATGAATGAA
65 ACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
57203 CTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTC-GACCAGAGGGGCAGG
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCAGG
** * * *
57267 ATGCGCAAGCCAGG-GATCGGTCGGGTCCCCCTTTGTGTGCTAC-CA--AT-CT--TAC--CC-T
194 ATGCGCAAGCC-GGAGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATCCTGCTACTACAACCAT
* * *
57322 C-GTTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGT
258 CAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
** * *
57386 GGGCAGGCGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGTATCGATAGGCT
322 GGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
57451 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATTCCATTTTTATGGCTTGTAAA
387 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
*
57516 TTCATACAATGGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
452 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
57581 TTAGGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTCTGGC
517 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
*
57646 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
582 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
57711 TTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCT
647 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
** * *
57776 ACTAACAGCAAACCTGTAAAATCTCAAATGCTCAAATGCTCTCTAAGGGGGTGTCAATTCTCAAG
712 ACTGGCAGCAAACCTGTAAAATCTCAAATG--C---T-CT-T-TAAGGGGGTGTGAGTTCTCAAG
57841 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
769 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
57906 CACACCCCTCGGCCCCCCAATCATCGAAACCCCAATGCTGCCGGCCAAGTTCTCCGG
834 CACACCCCTC--CCGCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * *
57963 CGATGGTGGTCCGGGCGAAAAAAAATACGGTACAAGCACATGACCGAGCCCAGCATGTGCACCCA
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
* * * * *
58028 CAACCCTC-AGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAA
66 CAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * * *
58092 CTCCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGGGGTAGGA
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGA
* * * *
58157 T-CTGCAAGTC-GATGATCAGTCGGGTCCCCCTCTA-CGTGCT-GTCGATCCTGCTACTGCAACC
195 TGC-GCAAGCCGGA-GATCGGTCGGGTCCCCCTC-AGCGTGCTACT-GATCCTGCTACTACAACC
* * ** * * * * *
58218 CTCAGTTTGGTTTGATCTTAGGCTGGGAATGAACTTCGTACGCCT-AGCCCAATCGACGAAATGA
256 ATCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGA
* * * * *
58282 GTGGGC-GAGCCGACAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTAGATCGATAG
320 GCGGGCAG-GCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
*
58346 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATACCAATGCCATTTTTATGGCTTGT
384 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
* * *
58411 AAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCATTTTCTAT
449 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
58476 TTTTCATGATTTTTGAAACTTTTTACGGTTC-AGATTTTTTTTAAATTTTTTCAGAAGGAGTTTT
514 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* *
58540 GGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAA
579 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
58604 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
644 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
58669 GCTACTGGCAGCAAACTTG-AAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
709 GCTACTGGCAGCAAACCTGTAAAA-TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * *
58733 GATGAGGGAAAGGGGGCTAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
773 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
58798 CACCC-CGCCCCCTCAATCATCGGAACCCCAATACCGCCGGTCAGGTTCTCCGA
838 C-CCCTC-CCGCC-CAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * * *
58851 CGA-GGTGCCCCGGG-G-GAAAAAATGCGACACCAGCACATGCCTGAGCCTAGCATGTGCACCCA
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
* * ** **
58913 CAACACTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTTCACTGGGAATGAAC
66 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
58978 TCCATATGCCTAAGTCAACCCATGAAACAAGCGTGC-GACGCTCAGCCAGCCAGAGGGGCAGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGAT
* * * * * * *
59042 GAGCAAGCCGAAGATCGATCGGGTCCCCTTCAGCGTGC-AATCGATCTTGCTACCACAA-CACTC
196 GCGCAAGCCGGAGATCGGTCGGGTCCCCCTCAGCGTGCTACT-GATCCTGCTACTACAACCA-TC
* * * * * *
59105 GGTCCGGTCTGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGG
259 AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * *
59170 GCAGGCGGGCGGGCACTACGTCAGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGCGG
324 GCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* **
59235 TAGGTGAGTTTAGGCATGTCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
389 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
59300 CTTGCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
454 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * ** *
59365 ATGATTTTTGAAACATTTTACGGCTCGGGGA-TTTTTAAAAATTTTTTCATTAGGATTTTTGGCC
519 ATGATTTTTGAAACTTTTTACGGTTC-GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * * *
59429 CCAAACTTGGTAGACATGATCCTTGTATTTATGTTGGCATTCATAAAAAAATTCAGCTAAAAACT
583 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
59494 CGAAGTGTACAGGATTTTGTAACCTTTTGAAAAAA-TATCCCTATTTCAGACACTTTAATGGCTA
648 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
59558 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGA
713 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* * *
59623 GGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCCCACATCATGTGCGTACACCTGC
778 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--C
** * *
59688 CTACCCGCCCAATCGCCGGAACCCCAATGCCACCGGTCAGGTTATCCGG
841 CT-CCCGCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * * * * *
59737 CGATGGTGGCCTGGGCGAAAAAAAATACGACACTAGGACATGCCCGAGCCCAGCATGTACACTCG
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
*
59802 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
66 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* *
59867 TCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GACGCTCAGCCAGCCAGAGGGGCAGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGAT
* * * * * *
59931 GTGCTAGCCGGAGATCGGTTGCGTCCCCCTCAGCGTGCTACTAATCCTGCTACTGCAACCAT-AG
196 GCGCAAGCCGGAGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATCCTGCTACTACAACCATCAG
* * * * * * *
59995 ATCTGGTCCAATCTTAGAATGGGAATGAACTCTGTATACCTAAGCCAACCGACAAAACGAGAGAG
261 -TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * **
60060 CAGGCGGGCGGGCACTACGCCGGCTAGAGAGGCTGGATGCACAAGTTGTGGATCGATAGGGTGGT
325 CAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
60125 AGGTGGGTTTAGGGACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
390 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
60190 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
455 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
60255 TGATTTTTGAAACTTTTTAAGGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCC
520 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * * * * * * * *
60320 AATCTTGATAGACATGATTCTTGTTTTTTTATTGGCGTGCACAAAAAAATTCAGCTACAAACTTG
585 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
60385 AACTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTT--TGGCTACT
650 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
60448 GGCAGCAAACTTGTAAAATCTCAAATGC-CTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
715 GGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* * *
60512 GGATAGGAGGCCAATATGAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCTC
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC
* * * *
60577 GGCCCCCCAATCATCGAAACCCCAATGCCGCTGGTCAGGTTCTTCGG
844 --CCGCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
*
60624 TGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
*
60689 CGA-CC-C--T-CGGTCCGATC-----C---------A------AT-CTTAGACTGGGAATGAAC
66 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
60728 TTCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCAGGCGCTCAGCCGGTCAGAGGGGCAGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGAT
* ** * * * * * *
60793 GTGCAAGTAGGGGATCGGTCGGGTCCCCATCTGCGTGCT-GTCGATCCTGCTGCTACAACCCTCA
196 GCGCAAGCCGGAGATCGGTCGGGTCCCCCTCAGCGTGCTACT-GATCCTGCTACTACAACCATCA
* * *
60857 GTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGG
260 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * * *
60922 CGGGCTGGCAGGCACTACGTCAGCCAGAGAGGCGGGATGTGCAAGTCATGGATCGATAGGGTGGT
325 CAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
60987 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
390 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
61052 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG-CGACTTGTTTTTTATTTTTCA
455 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
61116 TGATTTTCT-AAACTTTTTACGGTTCGGGATTTTTTTCAAATTTTTTCAGAAGGAGGTTTGGCCC
520 TGATTTT-TGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
*
61180 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACACAAAAATTCAGCTAAAAACTC
584 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
61245 GAAGTTTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCCAC
649 GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
61310 TGGTAGCAAACCTGTAAAATTTCAAAT-C-C-TTAA--GGG-GTG-GTT-TCAA-----GAT-AG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
61361 GGAT---GGGCCACTATAA-GG-CAAGTACCA--A-CCATCG-ACATCAT-TGCGCACA--CC-C
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC
* * * * *
61413 CCGCCCCATCGTCAGAA-CCCAA-GCTG-CAGTCAGGTTCTCCGG
844 CCGCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
61455 CGA-GGTGGCCCGGGTG-AAAAAAAT--GGCACAAGCACATTCCCGAGCCCAGCATGTTGCACCC
1 CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG-TGCACCC
* * *
61516 AGTCAA-ACTCGATCCGGTTCGAGCTTAGACT-GGAATGAACTTCCGTA-GCTTAGACTGGGAAT
65 A--CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGAAT
* * * * *
61578 G-ACTCCGTAT-CCTAAGTC-ACCCATGAAA--A--ATGTGAGC-CTCAGCCA--CAAAGGGGCA
127 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCA
** * *
61633 -GATGCCGCAAG-TTGAGGATC-GT-GGAGT-CCCTTCTAGC-TGCT--T-ATCCTGCTACTCGC
192 GGATG-CGCAAGCCGGA-GATCGGTCGG-GTCCCCCTC-AGCGTGCTACTGATCCTGCTACT-AC
* * * *
61689 AATCC-TCAGTCCGAT-C-ATCTTAGACTGGGAATGAACT-CGTATGCCTAAGACAACTGACGAA
252 AA-CCATCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
61750 AC-A--GGTCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC-CGAAGCCGTGGATCG
316 ACGAGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGC-AAGCCGTGGATCG
*
61811 ATAGGGTGGTAGGTGTGTTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCCATTTTTATG
380 ATAGGGTGGTAGGTG-GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG-CCATTTTTATG
* *
61876 GCTTGTAAATTCTTACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCCATGGCAAGACGACTCGT
443 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT-CATGGCAAGACGACTCGT
* *
61941 TTTCCTATTTTTCACGATTTTTGAAACTTTTTATACCGGTTCGAGA-TTTTTTAAAATTTTTT--
507 TTT-CTATTTTTCATGATTTTTGAAAC-TTTT-TA-CGGTTCGGGATTTTTTTAAAATTTTTTCA
* * * *
62003 TAAGGAGTTCTAGCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
568 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
62068 ATTCAGCTAAAAACTTC-AAGTGTACAGGATTTTGTGACCATTTGAAAAAATTGTCCCCCATTTC
633 ATTCAGCTAAAAAC-TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTC
* *
62132 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATC-CAAATGCCTCCTTAAGGGGGTGTGA
696 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGA
* *
62196 GTTCCTCAACGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCATGTACGAGCACCCATCGCA
760 GTT-CTCAA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
62260 CAT
823 CAT
62263 GCTCGAGCCC
Statistics
Matches: 5941, Mismatches: 758, Indels: 472
0.83 0.11 0.07
Matches are distributed among these distances:
827 27 0.00
828 8 0.00
829 8 0.00
830 15 0.00
831 16 0.00
832 3 0.00
833 7 0.00
834 83 0.01
835 36 0.01
836 57 0.01
837 34 0.01
838 32 0.01
839 152 0.03
840 68 0.01
841 27 0.00
842 22 0.00
843 15 0.00
844 26 0.00
845 5 0.00
846 20 0.00
847 339 0.06
848 4 0.00
849 15 0.00
850 3 0.00
851 9 0.00
852 8 0.00
853 11 0.00
854 17 0.00
855 12 0.00
856 9 0.00
857 10 0.00
858 14 0.00
859 2 0.00
860 13 0.00
861 240 0.04
862 297 0.05
863 124 0.02
864 206 0.03
865 58 0.01
866 5 0.00
867 2 0.00
868 2 0.00
869 2 0.00
871 1 0.00
872 6 0.00
873 56 0.01
874 1 0.00
875 1 0.00
876 2 0.00
877 1 0.00
879 5 0.00
880 255 0.04
881 325 0.05
882 129 0.02
883 19 0.00
884 506 0.09
885 335 0.06
886 119 0.02
887 132 0.02
888 263 0.04
889 894 0.15
890 122 0.02
891 2 0.00
892 7 0.00
893 9 0.00
894 3 0.00
895 6 0.00
896 116 0.02
897 71 0.01
898 256 0.04
899 140 0.02
900 96 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CGATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGAT
GCGCAAGCCGGAGATCGGTCGGGTCCCCCTCAGCGTGCTACTGATCCTGCTACTACAACCATCAG
TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
AGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCC
GCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
Found at i:61571 original size:25 final size:24
Alignment explanation
Indices: 61537--61586 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 24
61527 ATCCGGTTCG
61537 AGCTTAGACT-GGAATGAACTTCCGT
1 AGCTTAGACTGGGAATG-AC-TCCGT
61562 AGCTTAGACTGGGAATGACTCCGT
1 AGCTTAGACTGGGAATGACTCCGT
61586 A
1 A
61587 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 6 0.25
25 12 0.50
26 6 0.25
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (24 bp):
AGCTTAGACTGGGAATGACTCCGT
Done.