genome.fa.s7.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167832.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85611

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1538--1582	23	2.0	23	91	4	74	51	4	4	40	1.42
1767--1893	26	4.9	26	70	0	83	18	19	25	36	1.95
2026--2055	3	10.0	3	100	0	60	66	0	0	33	0.92
2057--2083	3	9.0	3	100	0	54	33	0	0	66	0.92
2088--2137	22	2.3	22	86	6	66	2	18	4	76	1.04
2651--2697	19	2.5	19	96	0	85	31	10	10	46	1.73
2976--3019	19	2.3	19	88	0	61	13	4	4	77	1.08
3155--3212	21	2.8	20	79	10	55	60	6	3	29	1.39
14471--14834	117	3.1	117	78	5	355	22	24	15	38	1.92
14530--14915	114	3.4	113	80	5	384	21	24	16	37	1.93
15450--15484	17	2.1	17	89	5	54	5	11	2	80	1.00
15443--15484	16	2.5	18	81	14	54	7	9	2	80	0.97
17280--17319	3	13.3	3	100	0	80	35	0	32	32	1.58
21777--21840	15	4.3	15	74	18	55	39	3	7	50	1.47
22547--22595	23	2.1	23	85	7	64	44	2	2	51	1.24
25043--25086	4	10.8	4	81	13	54	75	0	2	22	0.92
25045--25087	17	2.6	17	88	3	61	74	0	2	23	0.93
27278--27331	27	2.0	26	82	3	63	51	1	12	33	1.51
29270--29302	2	16.5	2	100	0	66	51	0	0	48	1.00
29362--29622	128	2.0	129	98	0	506	35	11	22	29	1.90
38129--38172	21	2.1	21	82	0	52	40	25	4	29	1.75
40769--40981	63	3.4	61	73	14	182	37	12	10	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40685--41305	125	4.9	124	75	9	540	36	13	9	39	1.78
40719--41294	64	9.1	61	67	14	190	38	13	9	39	1.77
43381--43422	21	2.0	22	85	4	59	40	21	21	16	1.91
45118--45190	35	2.1	35	92	0	119	34	19	10	35	1.87
45766--45929	61	2.7	60	80	7	170	34	16	12	35	1.87
45847--46021	63	2.8	63	83	4	185	32	18	12	37	1.87
45874--46090	63	3.5	63	81	5	228	31	14	12	40	1.84
50727--50796	27	2.6	27	90	4	106	37	12	4	45	1.62
54731--54781	20	2.5	20	87	6	68	49	7	5	37	1.56
54842--54881	19	2.1	19	95	0	71	67	0	2	30	1.04
54861--55017	9	16.4	9	67	19	61	56	5	2	36	1.35
54913--54945	17	2.0	16	94	5	57	60	0	3	36	1.12
54984--55039	18	2.9	18	80	15	58	51	7	1	39	1.40
55036--55064	10	3.0	10	95	5	51	68	0	0	31	0.89
55097--55144	24	2.0	24	83	0	60	62	0	2	35	1.07
55403--55437	17	2.1	17	88	0	52	62	5	2	28	1.32
55700--55769	19	3.6	19	74	14	54	34	0	12	52	1.40
55709--55760	19	2.7	19	84	3	59	30	0	11	57	1.34
55776--55830	10	5.6	10	80	6	60	41	1	5	50	1.36
55776--55825	20	2.5	20	90	3	73	44	2	6	48	1.39
55940--55973	11	3.2	11	87	4	52	23	2	8	64	1.36
58192--58263	28	2.6	29	82	10	80	59	0	4	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58329--58378	14	3.6	14	78	13	50	52	0	0	48	1.00
58335--58378	14	3.3	13	78	15	54	52	0	0	47	1.00
58418--58459	21	2.0	21	85	0	57	33	2	0	64	1.07
58694--58747	28	1.9	28	92	0	90	51	1	1	44	1.22
60186--60264	40	2.0	39	95	2	140	44	2	11	41	1.54
62279--62324	16	2.8	16	80	3	56	47	2	0	50	1.13
62562--62607	22	2.1	22	84	8	58	47	10	0	41	1.38
63747--63778	15	2.1	15	100	0	64	40	18	12	28	1.87
63746--63785	15	2.9	14	86	13	57	42	17	12	27	1.85
63775--64086	41	7.5	41	83	8	182	53	11	5	29	1.60
63869--64100	41	5.5	44	80	12	190	55	10	4	28	1.54
63774--64086	89	3.7	88	82	7	325	53	11	6	29	1.61
63873--64085	82	2.6	82	88	2	306	56	10	4	28	1.54
63825--64086	120	2.1	130	85	7	364	54	11	5	29	1.58
64114--64217	20	5.3	20	78	9	97	51	11	5	30	1.61
64865--64907	20	2.2	20	87	8	61	74	4	0	20	1.00
65190--65388	43	4.6	43	75	12	183	38	15	13	32	1.86
65190--65388	88	2.3	85	81	7	231	38	15	13	32	1.86
65559--65583	13	1.9	13	100	0	50	40	12	24	24	1.88
67190--67235	14	3.3	14	82	14	51	2	10	2	84	0.79
67203--67235	12	2.6	13	90	4	50	3	9	0	87	0.63
69673--69721	24	2.0	24	85	14	66	38	12	12	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69963--70010	22	2.2	21	85	10	62	58	16	2	22	1.49
69970--70284	41	7.7	41	82	5	309	54	12	3	28	1.55
70326--70430	20	5.3	20	77	7	81	53	8	5	32	1.55
70407--70469	32	1.9	33	87	3	92	53	6	6	33	1.51
70442--70479	20	2.0	18	90	10	58	47	10	7	34	1.67
70417--70493	32	2.5	31	80	4	75	51	10	7	29	1.64
74325--74481	10	16.0	10	72	10	101	38	3	4	52	1.40
74325--74447	19	6.3	19	81	7	122	34	3	4	57	1.34
76529--76588	15	4.1	15	76	20	54	56	0	1	41	1.09
76542--76572	12	2.6	12	89	0	53	61	0	0	38	0.96
76533--76589	29	2.0	29	86	6	82	59	0	1	38	1.08
76652--76716	12	5.3	12	73	10	60	49	0	1	49	1.10
80089--80156	34	2.0	34	85	0	91	48	10	2	38	1.52

Tables:   1

The End!