Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167896.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62003
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
File 1 of 2
Found at i:555 original size:16 final size:16
Alignment explanation
Indices: 531--577 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
521 CCTTAATAAT
*
531 TTAAAAAATTATTTAG
1 TTAATAAATTATTTAG
547 TTAATAAATTATTTAG
1 TTAATAAATTATTTAG
563 -TAATTAAATTATTTA
1 TTAA-TAAATTATTTA
578 AAATTATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 3 0.10
16 26 0.90
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (16 bp):
TTAATAAATTATTTAG
Found at i:582 original size:15 final size:16
Alignment explanation
Indices: 536--583 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
526 ATAATTTAAA
*
536 AAATTATTTAGTTAA-T
1 AAATTATTTAG-AAATT
*
552 AAATTATTTAGTAATT
1 AAATTATTTAGAAATT
568 AAATTATTTA-AAATT
1 AAATTATTTAGAAATT
583 A
1 A
584 TATAATTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (16 bp):
AAATTATTTAGAAATT
Found at i:597 original size:10 final size:10
Alignment explanation
Indices: 569--631 Score: 51
Period size: 10 Copynumber: 6.6 Consensus size: 10
559 TTAGTAATTA
*
569 AATTATTTAA
1 AATTATTTAT
579 AATTA--TAT
1 AATTATTTAT
587 AATTATTTAT
1 AATTATTTAT
* *
597 ACTTATTAAT
1 AATTATTTAT
* *
607 TA-TAATTAT
1 AATTATTTAT
*
616 AATTATTAAT
1 AATTATTTAT
626 AATTAT
1 AATTAT
632 AACTCTAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
8 7 0.17
9 6 0.15
10 27 0.68
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (10 bp):
AATTATTTAT
Found at i:621 original size:19 final size:17
Alignment explanation
Indices: 553--625 Score: 78
Period size: 18 Copynumber: 4.2 Consensus size: 17
543 TTAGTTAATA
553 AATTATTTAGTAATTA--
1 AATTATTTA-TAATTATT
*
569 AATTATTTAAAATTATAT
1 AATTATTTATAATTAT-T
*
587 AATTATTTATACTTATT
1 AATTATTTATAATTATT
604 AATTATAATTATAATTATT
1 AATTAT--TTATAATTATT
623 AAT
1 AAT
626 AATTATAACT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
15 5 0.10
16 9 0.19
17 7 0.15
18 14 0.29
19 13 0.27
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (17 bp):
AATTATTTATAATTATT
Found at i:627 original size:16 final size:16
Alignment explanation
Indices: 553--633 Score: 55
Period size: 16 Copynumber: 5.1 Consensus size: 16
543 TTAGTTAATA
*
553 AATTATTTAGTAATTA-
1 AATTA-TTAATAATTAT
569 AATTATTTAA-AATTATAT
1 AATTA-TTAATAA-T-TAT
* *
587 AATTATTTATACTTAT
1 AATTATTAATAATTAT
*
603 --TAATT-ATAATTAT
1 AATTATTAATAATTAT
616 AATTATTAATAATTAT
1 AATTATTAATAATTAT
632 AA
1 AA
634 CTCTAAAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
13 7 0.13
14 4 0.08
15 6 0.12
16 23 0.44
17 6 0.12
18 6 0.12
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (16 bp):
AATTATTAATAATTAT
Found at i:705 original size:35 final size:34
Alignment explanation
Indices: 664--743 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 34
654 TAAAGCTTAT
* * *
664 ATTATATTATAATTTAATTAT-TATTAATATTATAG
1 ATTATATT-TAACTAAATTATGTATTAAT-TTATAA
*
699 GTTATATGTTAACTAAATTATGTATTAATTTATAA
1 ATTATAT-TTAACTAAATTATGTATTAATTTATAA
734 ATTATATTTA
1 ATTATATTTA
744 TATATAAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
34 3 0.08
35 27 0.71
36 8 0.21
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (34 bp):
ATTATATTTAACTAAATTATGTATTAATTTATAA
Found at i:1167 original size:13 final size:13
Alignment explanation
Indices: 1149--1192 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
1139 CTAATCAGTA
1149 TATTAATATAAAT
1 TATTAATATAAAT
*
1162 TATTAATATATAT
1 TATTAATATAAAT
*
1175 TATGGAATATGAAAT
1 TAT-TAATAT-AAAT
1190 TAT
1 TAT
1193 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TATTAATATAAAT
Found at i:1261 original size:31 final size:31
Alignment explanation
Indices: 1226--1284 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
1216 AGATAAAATA
1226 TAATAGTT-ATATTTTATT-AATATTAAATAAT
1 TAATA-TTAATATTTTATTAAATA-TAAATAAT
1257 TAATATTAATATTTTATTAAATATAAAT
1 TAATATTAATATTTTATTAAATATAAAT
1285 TATTTAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 2 0.08
31 20 0.77
32 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (31 bp):
TAATATTAATATTTTATTAAATATAAATAAT
Found at i:3409 original size:25 final size:25
Alignment explanation
Indices: 3381--3428 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
3371 ACTTAAAATA
* *
3381 AATAGTATAATTAATTATTTATAAT
1 AATAATATAATTAAATATTTATAAT
*
3406 AATAATTTAATTAAATATTTATA
1 AATAATATAATTAAATATTTATA
3429 TTTTAATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (25 bp):
AATAATATAATTAAATATTTATAAT
Found at i:3498 original size:23 final size:23
Alignment explanation
Indices: 3443--3499 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
3433 AATTAATTAA
*
3443 TATTAATA-TT-ATTTAATAGAT
1 TATTAATATTTAATCTAATAGAT
* *
3464 TATTAGTATTTAATCTAATTGAT
1 TATTAATATTTAATCTAATAGAT
*
3487 TATTAATTTTTAA
1 TATTAATATTTAA
3500 ATATATATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 7 0.24
22 2 0.07
23 20 0.69
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (23 bp):
TATTAATATTTAATCTAATAGAT
Found at i:3509 original size:41 final size:42
Alignment explanation
Indices: 3430--3511 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
3420 ATATTTATAT
*
3430 TTTAATTAATTAATATTAATATTATTTAATAGATTATTAGTA
1 TTTAATTAATTAATATTAATATTATTAAATAGATTATTAGTA
* *
3472 TTTAATCTAATTGATTATTAAT-TT-TTAAATATA-TATTAGT
1 TTTAAT-TAATT-AATATTAATATTATTAAATAGATTATTAGT
3512 TGACAATATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
41 7 0.20
42 13 0.37
43 7 0.20
44 8 0.23
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.54
Consensus pattern (42 bp):
TTTAATTAATTAATATTAATATTATTAAATAGATTATTAGTA
Found at i:3538 original size:29 final size:26
Alignment explanation
Indices: 3497--3558 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 26
3487 TATTAATTTT
3497 TAAATAT-A-TATTAGTTGACAATATTTA
1 TAAATATAATTATTA-TTGACAA-A-TTA
* *
3524 TTAATATAATTATTATTTACAAATTA
1 TAAATATAATTATTATTGACAAATTA
3550 TAAATATAA
1 TAAATATAA
3559 GAAATAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 11 0.37
27 7 0.23
28 7 0.23
29 5 0.17
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (26 bp):
TAAATATAATTATTATTGACAAATTA
Found at i:3768 original size:21 final size:20
Alignment explanation
Indices: 3700--3771 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
3690 CTTGTTTAGT
*
3700 ATTAATTATATAATTAAATTAA
1 ATTATTTATATAATTAAA-T-A
*
3722 ATTAATTTATAATGATTAAA-A
1 ATT-ATTTAT-ATAATTAAATA
*
3743 TTTATCTTATATAATTAAATA
1 ATTAT-TTATATAATTAAATA
*
3764 CTTATTTA
1 ATTATTTA
3772 ATTTAATAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 13 0.32
21 12 0.29
22 3 0.07
23 5 0.12
24 8 0.20
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (20 bp):
ATTATTTATATAATTAAATA
Found at i:3876 original size:17 final size:16
Alignment explanation
Indices: 3829--3891 Score: 74
Period size: 17 Copynumber: 3.8 Consensus size: 16
3819 AATTATTTAT
3829 TTTAATTATAAT-ATA
1 TTTAATTATAATAATA
3844 TTTATATTATAAATAAGTA
1 TTTA-ATTAT-AATAA-TA
*
3863 TTTAATTATGATAAATA
1 TTTAATTATAAT-AATA
3880 TTTAATTATAAT
1 TTTAATTATAAT
3892 TAAATTAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
15 4 0.10
16 5 0.12
17 18 0.44
18 8 0.20
19 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
TTTAATTATAATAATA
Found at i:3966 original size:33 final size:30
Alignment explanation
Indices: 3916--3986 Score: 72
Period size: 33 Copynumber: 2.3 Consensus size: 30
3906 ATTGGTTCAA
* *
3916 ATAA-ATTATCTATTTATATAAGTATTAATAT
1 ATAATATTATCTACTTATAAAAGTA-TAAT-T
* *
3947 ATTAATATTATTTACTTATAAAATTATAATT
1 A-TAATATTATCTACTTATAAAAGTATAATT
3978 ATAATATTA
1 ATAATATTA
3987 ATAATTTGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
30 8 0.24
31 3 0.09
32 7 0.21
33 16 0.47
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (30 bp):
ATAATATTATCTACTTATAAAAGTATAATT
Found at i:4010 original size:30 final size:28
Alignment explanation
Indices: 3972--4072 Score: 80
Period size: 30 Copynumber: 3.3 Consensus size: 28
3962 TTATAAAATT
3972 ATAA-TTATAATATTAATAATTTGTTAATA
1 ATAATTTATAATATTAATAATTT-TTAA-A
*
4001 ATAATTTATAATACTATTAATATATATTATAAAA
1 ATAATTTAT-A-A-TATTAATA-AT-TT-TTAAA
4035 ATAATATTATAATA-TAATAATTATATTAAA
1 ATAAT-TTATAATATTAATAATT-T-TTAAA
4065 ATAATTTA
1 ATAATTTA
4073 AAACTTATAA
Statistics
Matches: 61, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
29 8 0.13
30 17 0.28
31 6 0.10
32 3 0.05
33 9 0.15
34 9 0.15
35 9 0.15
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (28 bp):
ATAATTTATAATATTAATAATTTTTAAA
Found at i:4050 original size:19 final size:19
Alignment explanation
Indices: 4018--4067 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
4008 ATAATACTAT
*
4018 TAATA-TATATTATAAAAA
1 TAATATTATAATATAAAAA
*
4036 TAATATTATAATATAATAA
1 TAATATTATAATATAAAAA
* *
4055 TTATATTAAAATA
1 TAATATTATAATA
4068 ATTTAAAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 5 0.19
19 22 0.81
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAATATTATAATATAAAAA
Found at i:4057 original size:14 final size:14
Alignment explanation
Indices: 3962--4070 Score: 54
Period size: 14 Copynumber: 8.1 Consensus size: 14
3952 TATTATTTAC
* *
3962 TTATAAAATTATAA
1 TTATAATATAATAA
3976 TTATAATATTAATAA
1 TTATAATA-TAATAA
*
3991 TT-T-GT-TAATAA
1 TTATAATATAATAA
* *
4002 TAAT-TTATAAT-A
1 TTATAATATAATAA
*
4014 CTATTAATAT-AT-A
1 TTA-TAATATAATAA
*
4027 TTATAAAAATAAT-A
1 TTAT-AATATAATAA
4041 TTATAATATAATAA
1 TTATAATATAATAA
* *
4055 TTATATTAAAATAA
1 TTATAATATAATAA
4069 TT
1 TT
4071 TAAAACTTAT
Statistics
Matches: 74, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
11 7 0.09
12 5 0.07
13 22 0.30
14 33 0.45
15 7 0.09
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (14 bp):
TTATAATATAATAA
Found at i:4413 original size:21 final size:22
Alignment explanation
Indices: 4362--4414 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
4352 ATAATATTTT
4362 TAATTAA-ATT-TGTTTAATAA
1 TAATTAATATTATGTTTAATAA
*
4382 TGA-TAATTATTATG-TTAATAA
1 TAATTAA-TATTATGTTTAATAA
4403 TAATTAATATTA
1 TAATTAATATTA
4415 ATATAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 3 0.11
20 2 0.07
21 17 0.63
22 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (22 bp):
TAATTAATATTATGTTTAATAA
Found at i:4426 original size:13 final size:15
Alignment explanation
Indices: 4384--4429 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
4374 TTTAATAATG
* *
4384 ATAATTATTATGTTA
1 ATAATAATTATATTA
4399 ATAATAATTAATATTA
1 ATAATAATT-ATATTA
4415 AT-ATAATT-TATTA
1 ATAATAATTATATTA
4428 AT
1 AT
4430 TTTAAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATAATAATTATATTA
Found at i:4559 original size:14 final size:14
Alignment explanation
Indices: 4519--4599 Score: 51
Period size: 14 Copynumber: 5.5 Consensus size: 14
4509 CAAAGATGAT
*
4519 TAATAATATTAATTA
1 TAATTATATTAA-TA
*
4534 TAATAATAATTAA-A
1 TAATTAT-ATTAATA
4548 TAAATTATATTAATA
1 T-AATTATATTAATA
4563 TAATTATTTATTGAATA
1 TAATTA--TATT-AATA
*
4580 T-ATTATAATTTATA
1 TAATTAT-ATTAATA
4594 T-ATTAT
1 TAATTAT
4600 TTTATTATCT
Statistics
Matches: 57, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
14 22 0.39
15 17 0.30
16 13 0.23
17 5 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (14 bp):
TAATTATATTAATA
Found at i:4585 original size:30 final size:30
Alignment explanation
Indices: 4524--4606 Score: 80
Period size: 30 Copynumber: 2.7 Consensus size: 30
4514 ATGATTAATA
* *
4524 ATATTAATTATAA-TAATAATTAAATAAATT
1 ATATTAA-TATAATTATTTATTAAATAAATT
* *
4554 ATATTAATATAATTATTTATTGAATATATT
1 ATATTAATATAATTATTTATTAAATAAATT
*
4584 ATAATTTATAT-ATTATTTTATTA
1 AT-ATTAATATAATTA-TTTATTA
4607 TCTAATTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 5 0.11
30 26 0.59
31 13 0.30
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (30 bp):
ATATTAATATAATTATTTATTAAATAAATT
Found at i:4848 original size:16 final size:17
Alignment explanation
Indices: 4823--4870 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
4813 ATCATATATA
*
4823 ATATATTATT-ATTATT
1 ATATAATATTAATTATT
*
4839 ATATAATATTAATAATT
1 ATATAATATTAATTATT
4856 ATATAA-ATTAATTAT
1 ATATAATATTAATTAT
4871 ATTATTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 17 0.61
17 11 0.39
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATAATATTAATTATT
Found at i:4880 original size:16 final size:16
Alignment explanation
Indices: 4824--4880 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 16
4814 TCATATATAA
4824 TATATTATT-ATT-AT
1 TATATTATTAATTAAT
4838 TATATAATATTAA-TAAT
1 TATAT--TATTAATTAAT
4855 TATA-TA--AATTAAT
1 TATATTATTAATTAAT
4868 TATATTATTAATT
1 TATATTATTAATT
4881 TAAAATATAC
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
12 2 0.06
13 8 0.23
14 9 0.26
16 9 0.26
17 7 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATTATTAATTAAT
Found at i:4895 original size:40 final size:41
Alignment explanation
Indices: 4829--4909 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 41
4819 TATAATATAT
* *
4829 TATTATTATTATATAATATTAATAATTATATAAATTAATTA
1 TATTATTATTATAAAATATTAATAATTAAATAAATTAATTA
* *
4870 TATTATTAATT-TAAAATA-TACTAATTAAATAACTTAATTA
1 TATTATT-ATTATAAAATATTAATAATTAAATAAATTAATTA
4910 ATTGGTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 19 0.54
41 13 0.37
42 3 0.09
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (41 bp):
TATTATTATTATAAAATATTAATAATTAAATAAATTAATTA
Found at i:5376 original size:22 final size:22
Alignment explanation
Indices: 5335--5376 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
5325 TTAATTAGAT
*
5335 TTAATAATTAATAATTAAATTA
1 TTAATAATTAATAATGAAATTA
5357 TTAATAATATAAT-ATGAAAT
1 TTAATAAT-TAATAATGAAAT
5377 AATCTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
TTAATAATTAATAATGAAATTA
Found at i:5652 original size:15 final size:15
Alignment explanation
Indices: 5628--5679 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
5618 AATGTCATAA
*
5628 TATATAAAATAATTT
1 TATATTAAATAATTT
*
5643 TATATTAAATAAATT
1 TATATTAAATAATTT
* * *
5658 TATTTTATATATTTT
1 TATATTAAATAATTT
5673 TA-ATTAA
1 TATATTAA
5680 TTATTATAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 3 0.10
15 26 0.90
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTAAATAATTT
Found at i:5696 original size:14 final size:14
Alignment explanation
Indices: 5673--5722 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
5663 TATATATTTT
5673 TAAT-TAATTATTA
1 TAATATAATTATTA
*
5686 TAA-ATATATTATAA
1 TAATATA-ATTATTA
*
5700 TAATATAATTATTT
1 TAATATAATTATTA
5714 TATATATAA
1 TA-ATATAA
5723 ATAATTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.17
14 16 0.53
15 9 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATAATTATTA
Found at i:5727 original size:19 final size:19
Alignment explanation
Indices: 5627--5728 Score: 62
Period size: 19 Copynumber: 5.7 Consensus size: 19
5617 TAATGTCATA
*
5627 ATATAT-AA-AATAATTTT
1 ATATATAAATAATTATTTT
5644 ATAT-TAAATAAATTTATTTT
1 ATATATAAAT-AA-TTATTTT
*** *
5664 ATATATTTTTAATTA-ATT
1 ATATATAAATAATTATTTT
5682 AT-TATAAAT-A-TA--TT
1 ATATATAAATAATTATTTT
5696 ATA-ATAATATAATTATTTT
1 ATATATAA-ATAATTATTTT
5715 ATATATAAATAATT
1 ATATATAAATAATT
5729 TATATTGTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 22
0.68 0.08 0.23
Matches are distributed among these distances:
14 8 0.12
15 4 0.06
16 3 0.05
17 12 0.18
18 4 0.06
19 16 0.25
20 16 0.25
21 2 0.03
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATATATAAATAATTATTTT
Found at i:5967 original size:23 final size:23
Alignment explanation
Indices: 5941--5987 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
5931 AATTTATTAA
5941 TTTTTATTTAA-TTAATAAATAT
1 TTTTTATTTAATTTAATAAATAT
* *
5963 TTTTTATTTAATTTAGTAATTAT
1 TTTTTATTTAATTTAATAAATAT
5986 TT
1 TT
5988 ATTTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTTTATTTAATTTAATAAATAT
Found at i:6664 original size:42 final size:43
Alignment explanation
Indices: 6563--6670 Score: 191
Period size: 43 Copynumber: 2.5 Consensus size: 43
6553 TATTAACTAA
* *
6563 TAAATTAGTATTATTTTATTATCAATAATTTAATGATATTATT
1 TAAATTAGTATTATTTTATTATAAATAATTCAATGATATTATT
6606 TAAATTAGTATTATTTTATTATAAATAATTCAATGATATTA-T
1 TAAATTAGTATTATTTTATTATAAATAATTCAATGATATTATT
6648 TAAATTAGTATTATTTTATTATA
1 TAAATTAGTATTATTTTATTATA
6671 TTTATTATTA
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
42 24 0.38
43 39 0.62
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (43 bp):
TAAATTAGTATTATTTTATTATAAATAATTCAATGATATTATT
Found at i:7432 original size:18 final size:18
Alignment explanation
Indices: 7409--7464 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
7399 ATTAAATAAA
7409 TATTTA-AATAATAACTAT
1 TATTTATAATAATAA-TAT
7427 TATTTATAA-ATATAATAT
1 TATTTATAATA-ATAATAT
7445 TAATTTATAATAATAA-AT
1 T-ATTTATAATAATAATAT
7463 TA
1 TA
7465 CTAATAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.03
18 14 0.41
19 18 0.53
20 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTTATAATAATAATAT
Found at i:7450 original size:19 final size:20
Alignment explanation
Indices: 7413--7460 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
7403 AATAAATATT
7413 TAAATAATAACTATTATTTA
1 TAAATAATAACTATTATTTA
7433 TAAAT-ATAA-TATTAATTTA
1 TAAATAATAACTATT-ATTTA
7452 T-AATAATAA
1 TAAATAATAA
7461 ATTACTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 7 0.27
19 14 0.54
20 5 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAATAATAACTATTATTTA
Found at i:7477 original size:19 final size:19
Alignment explanation
Indices: 7455--7498 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7445 TAATTTATAA
7455 TAATAAAT-TACTAATAAAT
1 TAATAAATATACT-ATAAAT
**
7474 TAATATTTATACTATAAAT
1 TAATAAATATACTATAAAT
7493 TAATAA
1 TAATAA
7499 CAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TAATAAATATACTATAAAT
Found at i:8306 original size:24 final size:25
Alignment explanation
Indices: 8272--8321 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
8262 AAATTATGAC
* *
8272 AATTTATAATTA-ATATTTATTATA
1 AATTTAAAATTAGATATTTATAATA
*
8296 AATTTAAAATTAGTTATTTATAATA
1 AATTTAAAATTAGATATTTATAATA
8321 A
1 A
8322 TTATATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
AATTTAAAATTAGATATTTATAATA
Found at i:8373 original size:17 final size:17
Alignment explanation
Indices: 8325--8374 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
8315 ATAATAATTA
*
8325 TATTAAACTTAATTAAT
1 TATTAAACATAATTAAT
* *
8342 AATT-AACA-ATCTTAAT
1 TATTAAACATA-ATTAAT
8358 TATTAAACATAATTAAT
1 TATTAAACATAATTAAT
8375 AAATAGTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 6
0.69 0.14 0.17
Matches are distributed among these distances:
15 1 0.04
16 11 0.44
17 12 0.48
18 1 0.04
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (17 bp):
TATTAAACATAATTAAT
Found at i:8505 original size:27 final size:27
Alignment explanation
Indices: 8453--8505 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
8443 CAAATAAGTT
* *
8453 TATAATTTAATTTAATAATTATTTTAA
1 TATAAGTTAATTTAATAATTAGTTTAA
*
8480 TATAAGTTAATTTTTATAATT-GTTTA
1 TATAAGTTAA-TTTAATAATTAGTTTA
8506 TAAAACTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (27 bp):
TATAAGTTAATTTAATAATTAGTTTAA
Found at i:9140 original size:19 final size:18
Alignment explanation
Indices: 9104--9150 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
9094 ATGTATATTT
*
9104 ATAATAATTTAATTACTA
1 ATAATAATTTAATGACTA
9122 ATAATAATATTAATGACTA
1 ATAATAAT-TTAATGACTA
*
9141 GTAATAATTT
1 ATAATAATTT
9151 TTATAATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (18 bp):
ATAATAATTTAATGACTA
Found at i:10630 original size:19 final size:19
Alignment explanation
Indices: 10588--10647 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
10578 TATTATTCTA
* * *
10588 TTATATAAGCAAACTATAAA
1 TTATATAAAC-AATTATAAT
10608 TTATATAAACAATTATAAT
1 TTATATAAACAATTATAAT
* * *
10627 TTATCTAAATAATTAAAAT
1 TTATATAAACAATTATAAT
10646 TT
1 TT
10648 TAAATTATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 25 0.74
20 9 0.26
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (19 bp):
TTATATAAACAATTATAAT
Found at i:10834 original size:19 final size:19
Alignment explanation
Indices: 10793--10835 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
10783 ATATTTATTT
*
10793 TAATTAATAATTAAATATT
1 TAATTAATAATTAAATATA
*
10812 TAATTAATAATATAATTA-A
1 TAATTAATAAT-TAAATATA
10831 TAATT
1 TAATT
10836 GTTACTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATTAATAATTAAATATA
Found at i:10875 original size:27 final size:26
Alignment explanation
Indices: 10821--10890 Score: 63
Period size: 27 Copynumber: 2.5 Consensus size: 26
10811 TTAATTAATA
*
10821 ATATAATTAATAATTGTTACTATTTT
1 ATATAATTAATAATTGTTACTATATT
10847 ATATAAATT-ATAATTAGTTA-TAATATT
1 ATAT-AATTAATAATT-GTTACT-ATATT
10874 ATAATACATATAATAAT
1 AT-ATA-AT-TAATAAT
10891 AATAGTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
26 11 0.31
27 15 0.42
28 4 0.11
29 1 0.03
30 5 0.14
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (26 bp):
ATATAATTAATAATTGTTACTATATT
Found at i:10885 original size:17 final size:18
Alignment explanation
Indices: 10847--10888 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
10837 TTACTATTTT
*
10847 ATATAA-ATTATAATTAG
1 ATATAATATTATAATTAC
*
10864 TTATAATATTATAA-TAC
1 ATATAATATTATAATTAC
10881 ATATAATA
1 ATATAATA
10889 ATAATAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATAATATTATAATTAC
Found at i:10891 original size:20 final size:19
Alignment explanation
Indices: 10866--10956 Score: 77
Period size: 20 Copynumber: 4.9 Consensus size: 19
10856 ATAATTAGTT
10866 ATAATATTA-TAATACATATA
1 ATAATATTAGTAATA-AT-TA
*
10886 ATAATAATAGTATATAATTA
1 ATAATATTAGTA-ATAATTA
10906 AGTAATATTAGTAATAATTA
1 A-TAATATTAGTAATAATTA
* *
10926 AT--TATAAGTACTAA-TA
1 ATAATATTAGTAATAATTA
10942 AT-A-ATTAGTAATAAT
1 ATAATATTAGTAATAAT
10957 CTTAAACTGT
Statistics
Matches: 60, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
16 13 0.22
17 10 0.17
19 1 0.02
20 19 0.32
21 14 0.23
22 3 0.05
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (19 bp):
ATAATATTAGTAATAATTA
Found at i:11512 original size:181 final size:179
Alignment explanation
Indices: 11228--12164 Score: 753
Period size: 181 Copynumber: 5.2 Consensus size: 179
11218 ATGGTAATAG
*
11228 ATTTATTTATTAAATC-T--CTTATTAATTTTTGA-AATATTAATAAATTAATATTATTTTATTT
1 ATTTATTT-TTAAATCTTCACTTATTAA-TTTTCATAATATTAATAAATTAATATTATTTTATTT
** * * * * * * *
11289 TGAACAAACTTATATGAACAAAAACATTTGTTTTACGACAAAACAAAAGGTCATAATGATTTGAA
64 CAAATAAGCTTAAATGAAGAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAA
* * **
11354 ATAGATAATTATTCATATAGCCTTAACTATTTGAATTTG-TTCGGTAAACAA
129 ATAGATAATTATTCAAATAGCCATAACTATTTGAA-TTGATTCAATAAACAA
* * * * *
11405 ATTTAGTTTTTAAATCTATCAGTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTT
1 ATTTA-TTTTTAAATCT-TCACTTATTAATTTTCATAATATTAATAAATTAATATTATTTTATTT
* * * *
11470 CAAATAAGCTTAAATGAAGATAAATAATTGTATTATGACAAAACAAAAGGTCCAT--TG----GA
64 CAAATAAGCTTAAATGAAGAAAAACAATTATTTTATGACAAAACAAAAGGT-CATAATGATTTGA
* * * *
11529 AATATATAATTATTCAAATAGTCATAACTATTTGAACTGATTCAATAAACAG
128 AATAGATAATTATTCAAATAGCCATAACTATTTGAATTGATTCAATAAACAA
* *
11581 ATTTATTTTTTAAATCTCCTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATT
1 ATTTA-TTTTTAAATCTTC-ACTTATTAA-TTTTCATAATATTAATAAATTAATATTATTTTATT
* * ** * * *
11645 AT-GAATAGGCTTGTATGATGAAAAAAAATTATTTTATGACAAAACAAAAGTTCATAATGATTTG
63 -TCAAATAAGCTTAAATGAAGAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTG
* * * * *
11709 AAATAGATAATTATTTAAATTGCCATAATTATTTGAATTGATTCCATAAACTA
127 AAATAGATAATTATTCAAATAGCCATAACTATTTGAATTGATTCAATAAACAA
* * * *
11762 ATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTT
1 ATTTAT-TTTTAAATCT-TCACTTATTAATTTTCATAATATTAATAAATTAATATTATTTTATTT
* *** * * * * *
11827 CAAATAAGCTTTTAA-GAACTGAAACAATTATTTTATGATAAAATATAAGGTCATAACGATTTTA
64 CAAATAAGC-TTAAATGAAGAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGA
** * * * * * *
11891 AATAGATAATTATTCAAATAGTTAAAAATATTTGAACTTG-TTTAGTAAATAG
128 AATAGATAATTATTCAAATAGCCATAACTATTTGAA-TTGATTCAATAAACAA
* * * * *
11943 ATTT-TTTTCTAATTTCTT-ACTTAATAATTTT-TTGAATGTTAATAAATTAGTATTATTTTATT
1 ATTTATTTT-TAA-ATCTTCACTTATTAATTTTCAT-AATATTAATAAATTAATATTATTTTATT
* * ** **** * * * * *
12005 TCGAATAAGCATGTATGACTTGAAGCAATTATTTTATGACTAAATAAAAGGTTAAAATGATTTGA
63 TCAAATAAGCTTAAATGAAGAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGA
* * ** * *
12070 AATAGATAATTGTTCTAATAGTCTTTAACTATTTGAACTGATTCAATAAACAC
128 AATAGATAATTATTCAAATAG-CCATAACTATTTGAATTGATTCAATAAACAA
* *
12123 ATTTATTTTTTAAATCCTT-ATTTATTAATGTTT-AGAATATTA
1 ATTTA-TTTTTAAAT-CTTCACTTATTAAT-TTTCATAATATTA
12165 TTAATTTAGC
Statistics
Matches: 606, Mismatches: 121, Indels: 62
0.77 0.15 0.08
Matches are distributed among these distances:
175 6 0.01
176 133 0.22
177 20 0.03
178 6 0.01
179 109 0.18
180 42 0.07
181 274 0.45
182 16 0.03
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.43
Consensus pattern (179 bp):
ATTTATTTTTAAATCTTCACTTATTAATTTTCATAATATTAATAAATTAATATTATTTTATTTCA
AATAAGCTTAAATGAAGAAAAACAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAAT
AGATAATTATTCAAATAGCCATAACTATTTGAATTGATTCAATAAACAA
Found at i:11724 original size:17 final size:18
Alignment explanation
Indices: 11697--11745 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
11687 AACAAAAGTT
*
11697 CATAATGATTTGAAATAG
1 CATAATTATTTGAAATAG
*
11715 -ATAATTATTT-AAATTG
1 CATAATTATTTGAAATAG
11731 CCATAATTATTTGAA
1 -CATAATTATTTGAA
11746 TTGATTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 5 0.19
17 9 0.35
18 10 0.38
19 2 0.08
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (18 bp):
CATAATTATTTGAAATAG
Found at i:12599 original size:158 final size:159
Alignment explanation
Indices: 12292--12606 Score: 512
Period size: 158 Copynumber: 2.0 Consensus size: 159
12282 TGTTTCTGCT
12292 CATACAAGCTTATTTTAAAATAAAATAATTAATTTAATTAATATTCCAAAATTTAATAAGTAAAA
1 CATACAAGCTTATTTTAAAATAAAATAATTAATTTAATTAATATTCCAAAATTTAATAAGTAAAA
* * * *
12357 ATTTAAAAAATAAATTTGTTTTTTGAATATGTTCGAATAATTCTGACTATTTGAACAATTATTTA
66 ATTT-AAAAATAAATATGTTTTTTGAACATGTTCAAATAATTCTGACTATTTGAACAATTATCTA
12422 TTTCAAATAGTTATGACCTTTTTGTTTTGTC
130 TTTCAAATAGTTATGACC-TTTTGTTTTGTC
* *
12453 CATACAAGCTTA-TTTCAAATAAAATAATTAAATTT-ATTAATGTTCCAAAATTTAATAAGTAAA
1 CATACAAGCTTATTTTAAAATAAAATAATT-AATTTAATTAATATTCCAAAATTTAATAAGTAAA
12516 AATTT-AAAATAAATATGTTTTTTGAACATGTTCAAATAGA-TCTGACTATTTGAACAATTATCT
65 AATTTAAAAATAAATATGTTTTTTGAACATGTTCAAATA-ATTCTGACTATTTGAACAATTATCT
12579 ATTTCAAATAGTTATGACCTTTTGTTTT
129 ATTTCAAATAGTTATGACCTTTTGTTTT
12607 ATGATGAACC
Statistics
Matches: 146, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
157 9 0.06
158 71 0.49
159 1 0.01
160 48 0.33
161 17 0.12
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.43
Consensus pattern (159 bp):
CATACAAGCTTATTTTAAAATAAAATAATTAATTTAATTAATATTCCAAAATTTAATAAGTAAAA
ATTTAAAAATAAATATGTTTTTTGAACATGTTCAAATAATTCTGACTATTTGAACAATTATCTAT
TTCAAATAGTTATGACCTTTTGTTTTGTC
Found at i:12815 original size:26 final size:25
Alignment explanation
Indices: 12786--12836 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
12776 TTATTCAATT
12786 TTTAATAT-TATCATATATATAATTAA
1 TTTAATATATAT-ATATA-ATAATTAA
*
12812 TTTAATATATATTTATAATAATTAA
1 TTTAATATATATATATAATAATTAA
12837 CTATATTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 12 0.52
27 3 0.13
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTAATATATATATATAATAATTAA
Found at i:13897 original size:181 final size:178
Alignment explanation
Indices: 13416--13981 Score: 626
Period size: 180 Copynumber: 3.2 Consensus size: 178
13406 TTAATTTAGT
* * * * * *
13416 ACGATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACT-AGTAT-GGTAAATAGAT
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGA-T-TCGGTAAA-AAAT
* * *
13479 TTATTTATTAAA---TCT-CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTTG
63 TTATTTTTTAAATCTTCTACTTATTAATTTTTCAAATATTAATAAATTAATATTATTTTA-TTTA
* * * * ** *
13540 AACAAACTTATATGAACAAAAACATTTGTTTTACAACAAAACAAAAGGTCATA
127 AATAAACTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAA-GTTATA
* * * * * *
13593 ACGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATTGGTTCGGTAAAAAATTTA
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGGTAAAAAATTTA
* * * *
13658 TTTTTTAAATCTATC-AATTATTAA-ATTTCATAATATTACTAGATTAATATTATTTTATTTCAA
66 TTTTTTAAATCT-TCTACTTATTAATTTTTCA-AATATTAATAAATTAATATTATTTTATTT-AA
* *
13721 ATAAACTTGTATGAAGATAAATAATTGTTTTATGACAAAACAAAATGTTATA
128 ATAAACTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAA-GTTATA
* * *
13773 ACGATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAAATTT
1 ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGGTAAA-AAATTT
* *
13838 ATTTTTTAAATCTTCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTATTAA
65 ATTTTTTAAATCTTCTACTTATTAATTTTTCAAATATTAATAAATTAATATTATTTTATT-TAAA
** *
13903 TAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATA
129 TAAACTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAGTT-ATA
* *
13954 ATGATTTGAAATAGATAATTGTTTAAAT
1 ACGATTTGAAATAGATAATTGTTCAAAT
13982 GGAATTATTA
Statistics
Matches: 322, Mismatches: 53, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
176 15 0.05
177 44 0.14
179 7 0.02
180 130 0.40
181 120 0.37
182 6 0.02
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (178 bp):
ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGGTAAAAAATTTA
TTTTTTAAATCTTCTACTTATTAATTTTTCAAATATTAATAAATTAATATTATTTTATTTAAATA
AACTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAGTTATA
Found at i:14072 original size:27 final size:28
Alignment explanation
Indices: 14020--14075 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
14010 ACTCTAATAA
*
14020 AATAGTATTAATTATATTATAAATAAATT
1 AATAGTAATAATTATATTAT-AATAAATT
14049 AATAGTTAATAATT-TATTAT-ATAAATT
1 AATAG-TAATAATTATATTATAATAAATT
14076 TATAAATCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 7 0.28
29 11 0.44
30 7 0.28
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (28 bp):
AATAGTAATAATTATATTATAATAAATT
Found at i:14273 original size:28 final size:28
Alignment explanation
Indices: 14242--14302 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
14232 TTATTATATA
14242 ATATAAAA-TA-TATTATATATTCAATAAT
1 ATATAAAATTATTATTATATA-T-AATAAT
**
14270 ATATTTAATTATTATTATATATAATAAT
1 ATATAAAATTATTATTATATATAATAAT
14298 -TATAA
1 ATATAA
14303 TCATTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
27 3 0.11
28 12 0.44
29 3 0.11
30 9 0.33
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
ATATAAAATTATTATTATATATAATAAT
Found at i:14351 original size:16 final size:17
Alignment explanation
Indices: 14319--14352 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14309 ATTTTATTAA
14319 TTATAAGTAATACTATT
1 TTATAAGTAATACTATT
*
14336 TTATAA-TAATATTATT
1 TTATAAGTAATACTATT
14352 T
1 T
14353 GAATAATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TTATAAGTAATACTATT
Found at i:14411 original size:16 final size:17
Alignment explanation
Indices: 14369--14421 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 17
14359 TATCTTATAC
*
14369 ATTATATTTAATAATATA
1 ATTATAGTTAATAAT-TA
14387 A--ATAGTTAATAATTA
1 ATTATAGTTAATAATTA
14402 ATTATA-TTAATAATT-
1 ATTATAGTTAATAATTA
14417 ATTAT
1 ATTAT
14422 TATCTATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 8 0.25
16 20 0.62
17 3 0.09
18 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
ATTATAGTTAATAATTA
Found at i:14596 original size:21 final size:22
Alignment explanation
Indices: 14572--14614 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14562 AATTAAATAA
14572 TAAA-AATT-AAATATTTTAATT
1 TAAATAATTAAAAT-TTTTAATT
*
14593 TAAATATTTAAAATTTTTAATT
1 TAAATAATTAAAATTTTTAATT
14615 ATTAACATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 11 0.58
23 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TAAATAATTAAAATTTTTAATT
Found at i:14868 original size:180 final size:182
Alignment explanation
Indices: 14610--14999 Score: 475
Period size: 181 Copynumber: 2.2 Consensus size: 182
14600 TTAAAATTTT
* * *
14610 TAAT-TATTAACA-TTCAAAAAATTAATAAGCAAAAGATATGAAAAAATAAATCTGTTTACTGAT
1 TAATCTATTAATATTTC-AAAAATTAATAAGCAAAAGATATAAAAAAATAAATCTGTTTACTGAA
* * * *
14673 CAAGTTCAAATAGTTATTACTATTTAAACAATTATTTATTTAAAATCGTTATGACC-TTTATTTT
65 CAAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGACCTTTTATTTT
* *
14737 GACAAAAAACAATTGTTTTAGTTCATAAAAGC-TTATCCAAAATAAAATAATAC
130 GACAAAAAACAAATGTTTTAGTCCATAAAA-CTTTATCCAAAATAAAATAATAC
* * * * * * *
14790 TAATTTCTTAATATTTCAAAAATTAATAAGCAAGAG-TTTAAAAAAATTAATTTGTTTATTGAAC
1 TAATCTATTAATATTTCAAAAATTAATAAGCAAAAGATATAAAAAAATAAATCTGTTTACTGAAC
*
14854 AAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTG
66 AAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGACCTTTTATTTTG
* * * * * *** *
14919 TCATAAAACAAATGTTTTTGTCCATATAACTTTGTTTGAAATAAATTAATAC
131 ACAAAAAACAAATGTTTTAGTCCATAAAACTTTATCCAAAATAAAATAATAC
* *
14971 TAGTCTATTAATATTTTAAAAATTAATAA
1 TAATCTATTAATATTTCAAAAATTAATAA
15000 TAGATCTAAA
Statistics
Matches: 177, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
180 78 0.44
181 96 0.54
182 3 0.02
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.39
Consensus pattern (182 bp):
TAATCTATTAATATTTCAAAAATTAATAAGCAAAAGATATAAAAAAATAAATCTGTTTACTGAAC
AAATTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGACCTTTTATTTTG
ACAAAAAACAAATGTTTTAGTCCATAAAACTTTATCCAAAATAAAATAATAC
Found at i:15097 original size:18 final size:18
Alignment explanation
Indices: 15049--15097 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
15039 AATAAAAATC
15049 AATAATTAA-AATATTTA
1 AATAATTAATAATATTTA
15066 AATTAA--AATCAATATTTA
1 AA-TAATTAAT-AATATTTA
*
15084 GATAATTAATAATA
1 AATAATTAATAATA
15098 AATTATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
16 2 0.08
17 5 0.19
18 16 0.62
19 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
AATAATTAATAATATTTA
Found at i:15099 original size:27 final size:28
Alignment explanation
Indices: 15032--15099 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
15022 TTAGATATCT
15032 ATTAATTAATAAAAATCAATAATTAAAATA
1 ATTAA-TAAT-AAAATCAATAATTAAAATA
* * * *
15062 TTTAA-ATTAAAATCAAT-ATTTAGATA
1 ATTAATAATAAAATCAATAATTAAAATA
15088 ATTAATAATAAA
1 ATTAATAATAAA
15100 TTATAAGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 11 0.35
27 14 0.45
28 2 0.06
30 4 0.13
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (28 bp):
ATTAATAATAAAATCAATAATTAAAATA
Found at i:15100 original size:26 final size:27
Alignment explanation
Indices: 15034--15100 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
15024 AGATATCTAT
15034 TAATTAATAA-AAATCAATAATTAAAA
1 TAATTAATAATAAATCAATAATTAAAA
* * * *
15060 TATTTAA-ATTAAAATCAAT-ATTTAGA
1 TAATTAATAAT-AAATCAATAATTAAAA
15086 TAATTAATAATAAAT
1 TAATTAATAATAAAT
15101 TATAAGTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
25 1 0.03
26 21 0.66
27 10 0.31
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.37
Consensus pattern (27 bp):
TAATTAATAATAAATCAATAATTAAAA
Found at i:15119 original size:23 final size:25
Alignment explanation
Indices: 15090--15141 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 25
15080 TTTAGATAAT
15090 TAATAATAAATT-ATAAG-TATTTA
1 TAATAATAAATTAATAAGATATTTA
* *
15113 TAATAATAATTTAATTAGATATTTA
1 TAATAATAAATTAATAAGATATTTA
15138 TAAT
1 TAAT
15142 TTAATTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 11 0.44
24 4 0.16
25 10 0.40
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (25 bp):
TAATAATAAATTAATAAGATATTTA
Found at i:16345 original size:15 final size:17
Alignment explanation
Indices: 16307--16353 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
16297 TATTATCAAA
*
16307 TAATAATATTAAT-TAT
1 TAATATTATTAATATAT
16323 TAATATTATTAATAT-T
1 TAATATTATTAATATAT
*
16339 TAA-ATTAATAATATA
1 TAATATTATTAATATA
16354 ATTTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 10 0.37
16 16 0.59
17 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATTATTAATATAT
Found at i:16451 original size:25 final size:24
Alignment explanation
Indices: 16405--16451 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
16395 AAATTACTAT
**
16405 ATAATATAAAAATATTTGTAACAA
1 ATAATATAAAAATATTAATAACAA
*
16429 ATAATATAATTAATATTAATAAC
1 ATAATATAA-AAATATTAATAAC
16452 TATTATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 9 0.47
25 10 0.53
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATATAAAAATATTAATAACAA
Found at i:16608 original size:26 final size:27
Alignment explanation
Indices: 16561--16614 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
16551 GTCATGTGAA
16561 ATATTTATATTAATAGAGATAA-TAAT
1 ATATTTATATTAATAGAGATAATTAAT
*
16587 ATATTTATATTAATATTA-ATAATTAAT
1 ATATTTATATTAATA-GAGATAATTAAT
16614 A
1 A
16615 AAAAAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (27 bp):
ATATTTATATTAATAGAGATAATTAAT
Found at i:16679 original size:14 final size:15
Alignment explanation
Indices: 16641--16681 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
16631 TTTAACAATT
16641 TAATATA-TTTAATA
1 TAATATATTTTAATA
* *
16655 TTATATTTTTTAATA
1 TAATATATTTTAATA
16670 TAATA-ATTTTAA
1 TAATATATTTTAA
16682 ATGATCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATATATTTTAATA
Found at i:16848 original size:13 final size:14
Alignment explanation
Indices: 16807--16854 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
16797 ATTATTATGC
16807 TATTAT-TTAATTA
1 TATTATATTAATTA
* *
16820 TCTTA-ATTAATAA
1 TATTATATTAATTA
16833 TATTATATT-ATTA
1 TATTATATTAATTA
16846 TATTATATT
1 TATTATATT
16855 TTTTATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 26 0.90
14 3 0.10
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (14 bp):
TATTATATTAATTA
Found at i:16959 original size:17 final size:17
Alignment explanation
Indices: 16893--16963 Score: 56
Period size: 17 Copynumber: 4.1 Consensus size: 17
16883 TAATTAGCAA
16893 ATAACTATATATAATTATT
1 ATAACTAT-TATAA-TATT
* * * *
16912 TTATA-TATAATAGTATA
1 ATA-ACTATTATAATATT
*
16929 ATAACT-TGATAATATT
1 ATAACTATTATAATATT
16945 ATAACTATTATAATATT
1 ATAACTATTATAATATT
16962 AT
1 AT
16964 TATAAATATC
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
16 14 0.35
17 17 0.43
18 3 0.08
19 5 0.12
20 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (17 bp):
ATAACTATTATAATATT
Found at i:16992 original size:21 final size:22
Alignment explanation
Indices: 16952--16993 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
16942 ATTATAACTA
16952 TTATAATATTATTATAAATATC
1 TTATAATATTATTATAAATATC
16974 TTATAA-ATT-TTAGTAAATAT
1 TTATAATATTATTA-TAAATAT
16994 TATTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 10 0.53
22 6 0.32
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
TTATAATATTATTATAAATATC
Found at i:17101 original size:21 final size:18
Alignment explanation
Indices: 17065--17099 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17055 TATGAATAGA
17065 ATAATATAATATATTATG
1 ATAATATAATATATTATG
17083 ATAATAATAAT-TATTAT
1 ATAAT-ATAATATATTAT
17100 TAATTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
ATAATATAATATATTATG
Found at i:17113 original size:17 final size:17
Alignment explanation
Indices: 17066--17135 Score: 56
Period size: 17 Copynumber: 4.1 Consensus size: 17
17056 ATGAATAGAA
*
17066 TAATATAATATATTATGA-
1 TAAT-TAATAT-TTATTAT
*
17084 TAA-TAATAATTATTAT
1 TAATTAATATTTATTAT
*
17100 TAATTAATATTTATAAT
1 TAATTAATATTTATTAT
*
17117 TAATTTATAATTTA-TAT
1 TAATTAAT-ATTTATTAT
17134 TA
1 TA
17136 TAAATTATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
15 5 0.12
16 8 0.19
17 22 0.51
18 8 0.19
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (17 bp):
TAATTAATATTTATTAT
Found at i:17157 original size:42 final size:41
Alignment explanation
Indices: 17100--17203 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 41
17090 TAATTATTAT
* * *
17100 TAATTAATATTTATAATTAAT-TTATAATTTATATTATAA-A
1 TAATTAAAATATATAATTAATATTATAATTTAT-TAATAATA
* *
17140 TTATTAAATATAATATAA-TAATATTATGATTTATTAATAATA
1 TAATTAAA-AT-ATATAATTAATATTATAATTTATTAATAATA
*
17182 TAATTAAAATATTTAATTAATA
1 TAATTAAAATATATAATTAATA
17204 ATTAGTTATA
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
40 11 0.21
41 18 0.35
42 23 0.44
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (41 bp):
TAATTAAAATATATAATTAATATTATAATTTATTAATAATA
Found at i:17165 original size:30 final size:30
Alignment explanation
Indices: 17130--17194 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
17120 TTTATAATTT
17130 ATATTATAAATTATT-A-AATATAATATAATA
1 ATATTATAAATTATTAATAATATAAT-TAA-A
* *
17160 ATATTATGATTTATTAATAATATAATTAAA
1 ATATTATAAATTATTAATAATATAATTAAA
17190 ATATT
1 ATATT
17195 TAATTAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 19 0.61
31 4 0.13
32 8 0.26
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (30 bp):
ATATTATAAATTATTAATAATATAATTAAA
Found at i:17222 original size:16 final size:17
Alignment explanation
Indices: 17180--17226 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
17170 TTATTAATAA
17180 TATAATTAA-AA-TA-T
1 TATAATTAATAATTAGT
17194 T-TAATTAATAATTAGT
1 TATAATTAATAATTAGT
17210 TATAATT-ATAATTAGT
1 TATAATTAATAATTAGT
17226 T
1 T
17227 TTATGATAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.24
14 3 0.10
15 2 0.07
16 12 0.41
17 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (17 bp):
TATAATTAATAATTAGT
Found at i:17329 original size:28 final size:27
Alignment explanation
Indices: 17295--17348 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
17285 TTATAAAATA
17295 TTATAATAAACAATTAGAATACTATAAG
1 TTATAATAAACAATTAGAA-ACTATAAG
** *
17323 TTATAATAATTATTTAGAAACTATAA
1 TTATAATAAACAATTAGAAACTATAA
17349 ATAGCTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.37
Consensus pattern (27 bp):
TTATAATAAACAATTAGAAACTATAAG
Found at i:17426 original size:15 final size:15
Alignment explanation
Indices: 17408--17445 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
17398 TTACTATTTA
*
17408 TATATTTATTATAAT
1 TATATTAATTATAAT
*
17423 TATAATAATTATAAT
1 TATATTAATTATAAT
17438 TATATTAA
1 TATATTAA
17446 GGTATTAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATTAATTATAAT
Found at i:17568 original size:28 final size:29
Alignment explanation
Indices: 17536--17598 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 29
17526 AAAAAATGAC
17536 TATAATAATA-ATTACTATTTGA-ATAAT-T
1 TATAATAATATATTA-TATTT-ATATAATAT
*
17564 TATAA-ATTATATTATATTTATATAATAT
1 TATAATAATATATTATATTTATATAATAT
17592 TATAATA
1 TATAATA
17599 GTTGATTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 1 0.03
27 13 0.43
28 15 0.50
29 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (29 bp):
TATAATAATATATTATATTTATATAATAT
Found at i:18451 original size:22 final size:22
Alignment explanation
Indices: 18417--18467 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
18407 TAATTTTTGG
** *
18417 AATATTATTTTAAAATATTAAT
1 AATATTAAATTAAAATACTAAT
* *
18439 AATATTAAATTAATATACTATT
1 AATATTAAATTAAAATACTAAT
18461 AATATTA
1 AATATTA
18468 CTAATTAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
AATATTAAATTAAAATACTAAT
Found at i:18476 original size:13 final size:13
Alignment explanation
Indices: 18438--18480 Score: 58
Period size: 11 Copynumber: 3.6 Consensus size: 13
18428 AAAATATTAA
18438 TAATATTA--AAT
1 TAATATTACTAAT
18449 TAATA-TACT-AT
1 TAATATTACTAAT
18460 TAATATTACTAAT
1 TAATATTACTAAT
18473 TAATATTA
1 TAATATTA
18481 AGTCTTGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 2 0.07
11 12 0.43
12 4 0.14
13 10 0.36
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (13 bp):
TAATATTACTAAT
Found at i:19164 original size:16 final size:17
Alignment explanation
Indices: 19145--19191 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
19135 TTATTCATAA
19145 AACTAATTA-TAATTAT
1 AACTAATTATTAATTAT
19161 AACTAATTATTAATTA-
1 AACTAATTATTAATTAT
19177 AA-T-ATT-TTAATTAT
1 AACTAATTATTAATTAT
19191 A
1 A
19192 TTATTAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.24
14 4 0.14
15 1 0.03
16 11 0.38
17 6 0.21
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
AACTAATTATTAATTAT
Found at i:19237 original size:29 final size:30
Alignment explanation
Indices: 19177--19307 Score: 82
Period size: 29 Copynumber: 4.5 Consensus size: 30
19167 TTATTAATTA
*
19177 AATATTTTAATTATATTATTAATAAATCAT
1 AATATATTAATTATATTATTAATAAATCAT
* *
19207 AATATATTATATTATA-T-TTAATAATTTAT
1 AATATATTA-ATTATATTATTAATAAATCAT
*
19236 AATATA--AATTATA-AATTAAT---T-AT
1 AATATATTAATTATATTATTAATAAATCAT
* * *
19259 AAAATATTAATTAATAATAATTAATTATTATCAT
1 AATATATTAATT-AT-ATTATTAA-TA-AATCAT
19293 AATATATTATATTAT
1 AATATATTA-ATTAT
19308 TCTAGTCATA
Statistics
Matches: 81, Mismatches: 6, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
23 7 0.09
24 1 0.01
25 4 0.05
26 8 0.10
27 7 0.09
28 6 0.07
29 17 0.21
30 9 0.11
31 6 0.07
33 1 0.01
34 12 0.15
35 3 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.49
Consensus pattern (30 bp):
AATATATTAATTATATTATTAATAAATCAT
Found at i:19242 original size:12 final size:13
Alignment explanation
Indices: 19228--19284 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 13
19218 TTATATTTAA
19228 TAATTTATAATA-
1 TAATTTATAATAT
*
19240 TAAATTATAA-AT
1 TAATTTATAATAT
*
19252 TAATTATAAAATAT
1 TAATT-TATAATAT
*
19266 TAATTAATAATAAT
1 TAATTTATAAT-AT
19280 TAATT
1 TAATT
19285 ATTATCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
11 1 0.03
12 13 0.36
13 8 0.22
14 14 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATTTATAATAT
Found at i:19261 original size:18 final size:18
Alignment explanation
Indices: 19238--19278 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
19228 TAATTTATAA
*
19238 TATAAATTATAAATTAAT
1 TATAAAATATAAATTAAT
*
19256 TATAAAATATTAATTAAT
1 TATAAAATATAAATTAAT
*
19274 AATAA
1 TATAA
19279 TTAATTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TATAAAATATAAATTAAT
Found at i:19526 original size:11 final size:11
Alignment explanation
Indices: 19505--19541 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
19495 TGTATATTTG
19505 TATTA-TTAAA
1 TATTATTTAAA
19515 TATTATTTAAA
1 TATTATTTAAA
*
19526 TATTATATAAA
1 TATTATTTAAA
19537 TATTA
1 TATTA
19542 GTAATAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TATTATTTAAA
Found at i:19583 original size:16 final size:16
Alignment explanation
Indices: 19558--19658 Score: 57
Period size: 16 Copynumber: 6.2 Consensus size: 16
19548 ATTGTTGTTA
*
19558 AATTAAATAAGTATTT
1 AATTATATAAGTATTT
*
19574 AATTATATAA--ATAT
1 AATTATATAAGTATTT
* *
19588 AATTAT-TAATTTAATT
1 AATTATATAA-GTATTT
* *
19604 AATTA-ATAATTAATT
1 AATTATATAAGTATTT
19619 AATTATATAAGATAAATTTT
1 AATTATATAAG-T--A-TTT
* *
19639 AATTATATAAATATTA
1 AATTATATAAGTATTT
19655 AATT
1 AATT
19659 GTATTTAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
13 3 0.04
14 9 0.13
15 11 0.16
16 29 0.43
17 2 0.03
19 2 0.03
20 12 0.18
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
AATTATATAAGTATTT
Found at i:19586 original size:20 final size:19
Alignment explanation
Indices: 19561--19651 Score: 67
Period size: 20 Copynumber: 4.3 Consensus size: 19
19551 GTTGTTAAAT
*
19561 TAAATAAGTATTTAATTATA
1 TAAATAAAT-TTTAATTATA
19581 TAAATATAATTATTAATT-TAA
1 TAAATA-AATT-TTAATTAT-A
*
19602 TTAATTAATAATTAATTAATTATA
1 -TAAAT-A-AATT--TTAATTATA
19626 TAAGATAAATTTTAATTATA
1 TAA-ATAAATTTTAATTATA
19646 TAAATA
1 TAAATA
19652 TTAAATTGTA
Statistics
Matches: 60, Mismatches: 3, Indels: 17
0.75 0.04 0.21
Matches are distributed among these distances:
19 3 0.05
20 20 0.33
21 9 0.15
22 8 0.13
23 10 0.17
24 9 0.15
25 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
TAAATAAATTTTAATTATA
Found at i:19607 original size:4 final size:4
Alignment explanation
Indices: 19558--19623 Score: 55
Period size: 4 Copynumber: 16.2 Consensus size: 4
19548 ATTGTTGTTA
* * * *
19558 AATT AAAT AAGT ATTT AATT ATATA AATAT AATT -ATT AATTT AATT AATT
1 AATT AATT AATT AATT AATT A-ATT AAT-T AATT AATT AA-TT AATT AATT
19608 AA-T AATT AATT AATT A
1 AATT AATT AATT AATT A
19624 TATAAGATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
3 6 0.12
4 34 0.68
5 10 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:19761 original size:53 final size:56
Alignment explanation
Indices: 19660--19781 Score: 132
Period size: 53 Copynumber: 2.3 Consensus size: 56
19650 TATTAAATTG
* **
19660 TATTTA-AATTAATATTTATATAATTTAAATAATTACCGTGGATCTATTA-T-TAA
1 TATTTATAATTAATATTTATATAATTTAAATAATTACCATAAATCTATTAGTATAA
* *
19713 TATTTATAATT-ATATTTATATAATATT-AATAATTAACTATAAAT-TATTAGTATAT
1 TATTTATAATTAATATTTATATAAT-TTAAATAATT-ACCATAAATCTATTAGTATAA
19768 TATTTATAA-TAATA
1 TATTTATAATTAATA
19782 AATAATAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
53 31 0.53
54 13 0.22
55 14 0.24
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (56 bp):
TATTTATAATTAATATTTATATAATTTAAATAATTACCATAAATCTATTAGTATAA
Found at i:20682 original size:182 final size:182
Alignment explanation
Indices: 20375--20816 Score: 707
Period size: 182 Copynumber: 2.5 Consensus size: 182
20365 AGTCATGTCC
*
20375 ATTTGAAATAAAATAATATTAATTTATTAATATTCCAAAAATGAATAAGTACGTGATTTAAAAAA
1 ATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATGAATAAGTACGTGATTTAAAAAA
*
20440 TGAATCTGTTTACCGAATCAGTTCAAATAGTTATAGCCATTTCAACAATTATCTATTTCAAATTG
66 TGAATCTGTTTACCAAATCAGTTCAAATAGTTATAGCCATTTCAACAATTATCTATTTCAAATTG
*
20505 TTGTTACCTTTTGTTTGGTCATATAACAATTGTTTTTTTATCATACAAGCT-T
131 TTATTACCTTTTGTTTGGTCATATAACAATTGTTTTTTTATCATACAAG-TAT
* *
20557 ATTTGAAATAAAATAATACTAATTTGTTAATATTCCAAAAATGAATAAGTACGTGATTTAAAAAG
1 ATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATGAATAAGTACGTGATTTAAAAAA
* * *
20622 TGAATCTGTTTACCAAATTAGTTCAAATAGTTATGGCCATTTCAACAATTATTTATTTCAAATTG
66 TGAATCTGTTTACCAAATCAGTTCAAATAGTTATAGCCATTTCAACAATTATCTATTTCAAATTG
*
20687 TTATTACCTTTTGTTTGGTCATATAACAATTGTTTTTTTATTATACAAGTAT
131 TTATTACCTTTTGTTTGGTCATATAACAATTGTTTTTTTATCATACAAGTAT
* *
20739 ATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAACT-AATAA--A--AGATTTAAAAA
1 ATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAA-TGAATAAGTACGTGATTTAAAAA
* *
20799 ATAAATTTGTTTACCAAA
65 ATGAATCTGTTTACCAAA
20817 CTGGTTTATT
Statistics
Matches: 243, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
178 25 0.10
180 1 0.00
181 1 0.00
182 215 0.88
183 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (182 bp):
ATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATGAATAAGTACGTGATTTAAAAAA
TGAATCTGTTTACCAAATCAGTTCAAATAGTTATAGCCATTTCAACAATTATCTATTTCAAATTG
TTATTACCTTTTGTTTGGTCATATAACAATTGTTTTTTTATCATACAAGTAT
Found at i:20914 original size:15 final size:16
Alignment explanation
Indices: 20859--20922 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 16
20849 TTAATATAAT
20859 TAATTAATTATATTAAA
1 TAATTAA-TATATTAAA
* *
20876 TGATACAAT-TGATATAAA
1 TAAT-TAATAT-AT-TAAA
20894 TAATTAA-ATATTAAA
1 TAATTAATATATTAAA
*
20909 TTATTAATATATTA
1 TAATTAATATATTA
20923 TTTGAATACA
Statistics
Matches: 37, Mismatches: 5, Indels: 11
0.70 0.09 0.21
Matches are distributed among these distances:
15 10 0.27
16 9 0.24
17 9 0.24
18 9 0.24
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (16 bp):
TAATTAATATATTAAA
Found at i:20942 original size:19 final size:20
Alignment explanation
Indices: 20917--20964 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
20907 AATTATTAAT
20917 ATATTATTTGAATAC-ATATA
1 ATATTATTT-AATACAATATA
*
20937 AT-TTATATTATTACAATATA
1 ATATTAT-TTAATACAATATA
20957 ATATTATT
1 ATATTATT
20965 GTAAATTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 8 0.33
20 12 0.50
21 4 0.17
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (20 bp):
ATATTATTTAATACAATATA
Found at i:21476 original size:18 final size:18
Alignment explanation
Indices: 21435--21476 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
21425 TAATAATTCA
21435 ATATTAATTAAAAAATTT
1 ATATTAATTAAAAAATTT
* *
21453 AAATTAATTATAAGAA-TT
1 ATATTAATTA-AAAAATTT
21471 ATATTA
1 ATATTA
21477 GGTTATAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATTAATTAAAAAATTT
Found at i:21544 original size:27 final size:29
Alignment explanation
Indices: 21514--21632 Score: 74
Period size: 27 Copynumber: 4.2 Consensus size: 29
21504 ATTAATAGAT
21514 ATATTATAAATA-AT-TATAATATTATTA
1 ATATTATAAATAGATATATAATATTATTA
*
21541 ATATAATATAATAG-TAT-T-ATATT-TATA
1 ATATTATA-AATAGATATATAATATTAT-TA
* * * * *
21568 TTAATATAAATAGATATCATTATATAATCA
1 ATATTATAAATAGATAT-ATAATATTATTA
*
21598 ATATATATAAATA-ATAATATAA-ATTGTTA
1 ATAT-TATAAATAGAT-ATATAATATTATTA
21627 ATATTA
1 ATATTA
21633 ATTATTTCTA
Statistics
Matches: 69, Mismatches: 12, Indels: 21
0.68 0.12 0.21
Matches are distributed among these distances:
26 6 0.09
27 22 0.32
28 8 0.12
29 10 0.14
30 12 0.17
31 11 0.16
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.45
Consensus pattern (29 bp):
ATATTATAAATAGATATATAATATTATTA
Found at i:21552 original size:19 final size:19
Alignment explanation
Indices: 21501--21559 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
21491 ATATTAAAAT
*
21501 TTAAT-TAATAGATATATTA
1 TTAATATAATATA-ATATTA
21520 -TAA-ATAATTATAATATTA
1 TTAATATAA-TATAATATTA
*
21538 TTAATATAATATAATAGTA
1 TTAATATAATATAATATTA
21557 TTA
1 TTA
21560 TATTTATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
18 12 0.35
19 18 0.53
20 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TTAATATAATATAATATTA
Found at i:21570 original size:30 final size:30
Alignment explanation
Indices: 21536--21592 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
21526 ATTATAATAT
21536 TATTAATATAATATA-ATAGT-ATTATATTTA
1 TATTAATATAA-ATAGATA-TCATTATATTTA
21566 TATTAATATAAATAGATATCATTATAT
1 TATTAATATAAATAGATATCATTATAT
21593 AATCAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (30 bp):
TATTAATATAAATAGATATCATTATATTTA
Found at i:21721 original size:15 final size:14
Alignment explanation
Indices: 21698--21731 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
21688 AATTAATATA
21698 TATTATATTATAAT
1 TATTATATTATAAT
*
21712 TATTATTATTTTAAT
1 TATTA-TATTATAAT
21727 TATTA
1 TATTA
21732 ATCTATTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTATATTATAAT
Found at i:21882 original size:17 final size:17
Alignment explanation
Indices: 21862--21936 Score: 82
Period size: 17 Copynumber: 4.3 Consensus size: 17
21852 ATATAAGTCC
21862 TATATTAGTAATATTA-T
1 TATATTA-TAATATTAGT
*
21879 TATACTTATATATATTATT
1 TATA-TTATA-ATATTAGT
*
21898 TATATTATAATATAAGT
1 TATATTATAATATTAGT
21915 TATATTAATAA-ATTAGT
1 TATATT-ATAATATTAGT
21932 TATAT
1 TATAT
21937 CATATTAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
17 28 0.55
18 18 0.35
19 5 0.10
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (17 bp):
TATATTATAATATTAGT
Found at i:21917 original size:21 final size:19
Alignment explanation
Indices: 21872--21910 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
21862 TATATTAGTA
21872 ATATTA-TTATACTTATAT
1 ATATTATTTATACTTATAT
21890 ATATTATTTATA-TTATA-
1 ATATTATTTATACTTATAT
21907 ATAT
1 ATAT
21911 AAGTTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
ATATTATTTATACTTATAT
Found at i:22275 original size:13 final size:13
Alignment explanation
Indices: 22257--22301 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
22247 TTTATTTTAA
22257 TAATTATAAAAAT
1 TAATTATAAAAAT
22270 TAATTAGTAAATAAT
1 TAATTA-TAAA-AAT
* *
22285 TAAATCTAAAAAT
1 TAATTATAAAAAT
22298 TAAT
1 TAAT
22302 CAAAATTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 12 0.44
14 8 0.30
15 7 0.26
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (13 bp):
TAATTATAAAAAT
Found at i:22530 original size:21 final size:22
Alignment explanation
Indices: 22505--22550 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
22495 TTCTTAGTCA
*
22505 TAAATCTGATTTTATTT-ATTT
1 TAAATATGATTTTATTTAATTT
*
22526 TAAATATTATTTTATTTAATTT
1 TAAATATGATTTTATTTAATTT
22548 TAA
1 TAA
22551 TAATCAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TAAATATGATTTTATTTAATTT
Found at i:24248 original size:54 final size:53
Alignment explanation
Indices: 24148--24249 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 53
24138 AAATTATTAA
* *
24148 ATTATTATTTTATCAAATAAAATTAATTAGTAATATTTAACTAATAAACTACT
1 ATTATTATATTATCAAATAAAATTAATTAGTAATATTTAAATAATAAACTACT
* *
24201 ATTATTATATTATCATAATATAATTAAAATTA-T-TTATTTAAATAATAAA
1 ATTATTATATTATCA-AATAAAATT--AATTAGTAATATTTAAATAATAAA
24250 TTTAAAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
53 14 0.33
54 22 0.52
55 1 0.02
56 5 0.12
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (53 bp):
ATTATTATATTATCAAATAAAATTAATTAGTAATATTTAAATAATAAACTACT
Found at i:25185 original size:179 final size:178
Alignment explanation
Indices: 24883--25351 Score: 543
Period size: 179 Copynumber: 2.6 Consensus size: 178
24873 GATCAAGTTG
* * *
24883 AAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGA-CATTTTGTTTTGTTATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCA-TTTGTTTTGTTATA
* * * * *
24947 AAACAATTGGTTCTATTCATGCAAGCGTATTTTGAATAAAATAATATAAATTTATTAATATTCCA
65 AAACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATATAAATTAATTAATATTCC-
* * * * *
25012 AAAATTAATAAGTATAA-TTTTAGAAAATAAAGCTATTTCTAAAC-A-CATTC
129 AAAATTAATAAGTAAAAGATTTAAAAAATAAA--T-TTGCTAAACGAGAATTC
* *
25062 AAATAGTTATTACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTTATAA
* ** * * *
25127 ACCAATTGTTTCTGCTCAAACAAGCTTATTTGGATTAAAATAACTCT-AATTAATTAATATTCCA
66 AACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAA-TATAAATTAATTAATATTCCA
* *
25191 AAATTAATAAGTAAAAGATTTAAAAAATAAATTTGCTTACCGAGTGAATTC
130 AAATTAATAAGTAAAAGATTTAAAAAATAAATTTGCTAAACGA--GAATTC
* * * * ** **
25242 AAATAGTTAAGATTGTTTGAACAATTATTTATTTCAAATGGTTATGACTTTTTGTTTTGTTATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTTATAA
*
25307 AACAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATA
66 AACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATA
25352 CTAATATATT
Statistics
Matches: 243, Mismatches: 40, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
176 6 0.02
177 2 0.01
178 16 0.07
179 119 0.49
180 100 0.41
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40
Consensus pattern (178 bp):
AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTTATAA
AACAATTGTTTCTATTCATACAAGCTTATTTGGAATAAAATAATATAAATTAATTAATATTCCAA
AATTAATAAGTAAAAGATTTAAAAAATAAATTTGCTAAACGAGAATTC
Found at i:26147 original size:85 final size:81
Alignment explanation
Indices: 26021--26180 Score: 180
Period size: 85 Copynumber: 1.9 Consensus size: 81
26011 ATAAATAATT
* * ** *
26021 ATATTTATTAATTTTCAAAATATTTAACAATATTTTAATAATTATTATTAAATATATTTTTAC-A
1 ATATATATTAATTTT-AAAATATTAAACAATATTTTAATAATTAAAATTAAATACATTTTTACTA
26085 AGTTATATTTAATACTATA
65 A-TTA-ATTTAATACTATA
* *
26104 ATATATATTAATTTT-AAATATTAAATCTAATTTATTTATATAATTAAAATTAATTACATTTTTA
1 ATATATATTAATTTTAAAATATTAAA-C-AATAT-TTTA-ATAATTAAAATTAAATACATTTTTA
26168 CTAATTAATTTAA
62 CTAATTAATTTAA
26181 AATTTAAAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
81 9 0.14
82 1 0.02
83 18 0.28
84 10 0.15
85 25 0.38
86 2 0.03
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (81 bp):
ATATATATTAATTTTAAAATATTAAACAATATTTTAATAATTAAAATTAAATACATTTTTACTAA
TTAATTTAATACTATA
Found at i:26241 original size:22 final size:24
Alignment explanation
Indices: 26199--26255 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
26189 ATAATTGCTA
26199 TAATTA-AATA-ATTAATCTAATT
1 TAATTATAATATATTAATCTAATT
26221 TAATTATAATATA-TAAT-TAATT
1 TAATTATAATATATTAATCTAATT
* *
26243 AAAATATAATATA
1 TAATTATAATATA
26256 AATATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 22 0.71
23 8 0.26
24 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
TAATTATAATATATTAATCTAATT
Found at i:26601 original size:13 final size:13
Alignment explanation
Indices: 26583--26630 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
26573 ATCCAAAATA
26583 AAAATAATTAATT
1 AAAATAATTAATT
*
26596 AAAATAATTATTT
1 AAAATAATTAATT
*
26609 AATAATTATT-ATT
1 AA-AATAATTAATT
26622 AAATATAAT
1 AAA-ATAAT
26631 AAACAATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 1 0.03
13 22 0.76
14 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAATAATTAATT
Found at i:27044 original size:171 final size:173
Alignment explanation
Indices: 26771--27423 Score: 525
Period size: 181 Copynumber: 3.7 Consensus size: 173
26761 CTGGTTTAGC
* * * * *
26771 AAACAAATTTATTTTTTAAATCTATTAG-TTATTAATTTTCAAAATATTATTACATTAGTATTAT
1 AAACAAATTTATTTTTTAAATCTCTTAGCTTATTAATTTTTAAAATATTAATAAATTAATATTAT
* * * * * * *
26835 TTTATTTCAAATAAACTTGTCTGAATAGAAATAATTGTTTTATGAAAGAACAAAAAGTTATAAGA
66 TTTATTACGAATAAGCTTGTATGAACAAAAACAATTGTTTTATGAAA-AACAAAAAGTTATAAGA
*
26900 -AATTGAAA-TACAAATAGTCATAACTATTTGAATTGATTCGAT
130 TAATAGAAATTACAAATAGTCATAACTATTTGAATTGATTCGAT
* * *
26942 AAACAAATTTATTTTTTAAATCTCCT-GCTTATTAATTTTTGAAATATTAATAAATTAATAGTAT
1 AAACAAATTTATTTTTTAAATCTCTTAGCTTATTAATTTTTAAAATATTAATAAATTAATATTAT
* *
27006 TTTATTACGAATAAGCTAGTAT-AACGAAAAACAATTGTTTTATGTCAAAAC-AAAAGTTCATAA
66 TTTATTACGAATAAGCTTGTATGAAC-AAAAACAATTGTTTTATG-AAAAACAAAAAGTT-ATAA
* * * * *
27069 TGATTTAGAATAGATAAATGTTCAAATAGCCATAATTATTTTAACTGATTCGAT
128 -GA--T--AATAG--AAAT-TACAAATAGTCATAACTATTTGAATTGATTCGAT
** * * * * * *
27123 AAACTGATTTATGTTTTAAATAT-TTAACTTATCAATTTTTAAAATATTAATAAAGTAACATTAT
1 AAACAAATTTATTTTTTAAATCTCTTAGCTTATTAATTTTTAAAATATTAATAAATTAATATTAT
* * * * * * * * *
27187 TTTATTTA-GGACAAGCTTTTATGATCTAAAACAATTGTTTTATGATAAAATAAAAGGTCATAGT
66 TTTA-TTACGAATAAGCTTGTATGAACAAAAACAATTGTTTTATGA-AAAACAAAAAGTTATA-A
*
27251 GATTTTAGATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTTGAT
128 GA---TA-ATAGA-AATTA--CAAATAGTCATAACTATTTGAA-TTGATTCGAT
* ** * *
27304 AAACAAATTTATTGTTTTAAATTTCTT-GCTTATTAATTTTTTGAATGTTAATAAATTAGTATTA
1 AAACAAATTTATT-TTTTAAATCTCTTAGCTTATTAATTTTTAAAATATTAATAAATTAATATTA
** * *** * *
27368 TTTTATTTTGAATAAGCATGTATGAATTTAAACAATTATTTTATGACTAAACAAAA
65 TTTTATTACGAATAAGCTTGTATGAACAAAAACAATTGTTTTATGA-AAAACAAAA
27424 GTTGACTATA
Statistics
Matches: 378, Mismatches: 75, Indels: 47
0.76 0.15 0.09
Matches are distributed among these distances:
170 10 0.03
171 94 0.25
172 4 0.01
177 4 0.01
179 5 0.01
180 5 0.01
181 160 0.42
182 94 0.25
183 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (173 bp):
AAACAAATTTATTTTTTAAATCTCTTAGCTTATTAATTTTTAAAATATTAATAAATTAATATTAT
TTTATTACGAATAAGCTTGTATGAACAAAAACAATTGTTTTATGAAAAACAAAAAGTTATAAGAT
AATAGAAATTACAAATAGTCATAACTATTTGAATTGATTCGAT
Found at i:27403 original size:182 final size:182
Alignment explanation
Indices: 26910--27424 Score: 561
Period size: 181 Copynumber: 2.8 Consensus size: 182
26900 AATTGAAATA
* *
26910 CAAATAGTCATAACTATTTGAA-TTGATTCGATAAACAAATTTATT-TTTTAAATCTCCTGCTTA
1 CAAATAGTCATAACTATTTGAACTTGATTCGATAAACAAATTTATTGTTTTAAATTTCTTGCTTA
* **
26973 TTAA-TTTTTGAAATATTAATAAATTAATAGTATTTTA-TTACGAATAAGCTAGTAT-AACGAAA
66 TTAATTTTTTG-AATATTAATAAATTAATATTATTTTATTTA-GAATAAGCT-GTATGAA-TTAA
* *
27035 AACAATTGTTTTATG-TCAAAACAAAAGTTCATAATGATTTAGAATAGATAAATGTT
127 AACAATTGTTTTATGAT-AAAACAAAAGGTCATAATGATTTAGAATAGATAAATATT
* * * ** **
27091 CAAATAGCCATAATTATTTTAAC-TGATTCGATAAACTGATTTA-TGTTTTAAATATT-TAACTT
1 CAAATAGTCATAACTATTTGAACTTGATTCGATAAACAAATTTATTGTTTTAAAT-TTCTTGCTT
* ** * * * * *
27153 ATCAATTTTTAAAATATTAATAAAGTAACATTATTTTATTTAGGACAAGCTTTTATG-ATCTAAA
65 ATTAATTTTTTGAATATTAATAAATTAATATTATTTTATTTAGAATAAGC-TGTATGAAT-TAAA
* * *
27217 ACAATTGTTTTATGATAAAATAAAAGGTCATAGTGATTTTAG-ATAGATAATTATT
128 ACAATTGTTTTATGATAAAACAAAAGGTCATAATGA-TTTAGAATAGATAAATATT
*
27272 CAAATAGTCATAACTATTTGAACTTG-TTTGATAAACAAATTTATTGTTTTAAATTTCTTGCTTA
1 CAAATAGTCATAACTATTTGAACTTGATTCGATAAACAAATTTATTGTTTTAAATTTCTTGCTTA
* * * *
27336 TTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTTGAATAAGCATGTATGAATTTAAAC
66 TTAATTTTTTGAATATTAATAAATTAATATTATTTTATTTAGAATAAGC-TGTATGAATTAAAAC
*
27401 AATTATTTTATGACT-AAACAAAAG
130 AATTGTTTTATGA-TAAAACAAAAG
27425 TTGACTATAG
Statistics
Matches: 271, Mismatches: 48, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
180 1 0.00
181 166 0.61
182 101 0.37
183 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (182 bp):
CAAATAGTCATAACTATTTGAACTTGATTCGATAAACAAATTTATTGTTTTAAATTTCTTGCTTA
TTAATTTTTTGAATATTAATAAATTAATATTATTTTATTTAGAATAAGCTGTATGAATTAAAACA
ATTGTTTTATGATAAAACAAAAGGTCATAATGATTTAGAATAGATAAATATT
Found at i:27857 original size:14 final size:13
Alignment explanation
Indices: 27836--27878 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
27826 GAGTAATTCA
27836 AATATTATATATT
1 AATATTATATATT
*
27849 AATTATTATAAATAT
1 AA-TATTATATAT-T
27864 AATATTATAATATT
1 AATATTAT-ATATT
27878 A
1 A
27879 GTTACTACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 2 0.08
14 17 0.68
15 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
AATATTATATATT
Found at i:27874 original size:23 final size:22
Alignment explanation
Indices: 27835--27878 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
27825 AGAGTAATTC
*
27835 AAATATTATATATTAATTATTAT
1 AAATATAATATATTAA-TATTAT
27858 AAATATAATAT-TATAATATTA
1 AAATATAATATAT-TAATATTA
27879 GTTACTACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATATAATATATTAATATTAT
Found at i:27995 original size:20 final size:21
Alignment explanation
Indices: 27972--28022 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
27962 CAAATATTTC
27972 AATAATTATTAAAT-TA-TTA
1 AATAATTATTAAATATAGTTA
* *
27991 TAATAAATAAT-AATATAGTTA
1 -AATAATTATTAAATATAGTTA
28012 AATAATTATTA
1 AATAATTATTA
28023 TTAATGATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
19 3 0.12
20 18 0.75
21 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AATAATTATTAAATATAGTTA
Found at i:28537 original size:26 final size:26
Alignment explanation
Indices: 28508--28557 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
28498 TAATAGTATA
28508 TATAACATACTAAT-TT-ATTAGATAAT
1 TATAAC-TA-TAATATTAATTAGATAAT
28534 TATAACTATAATATTAATTAGATA
1 TATAACTATAATATTAATTAGATA
28558 TTAATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.18
25 4 0.18
26 14 0.64
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (26 bp):
TATAACTATAATATTAATTAGATAAT
Found at i:29010 original size:176 final size:174
Alignment explanation
Indices: 28704--29276 Score: 544
Period size: 176 Copynumber: 3.3 Consensus size: 174
28694 AATTATATAA
* * * *
28704 TAATGATTTGAAATAGATAATTATTCTGATAGTCTTAAATATTTGAACTAGTTTGGCTAACAT--
1 TAATGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGAA-TTGTTTGG-TAA-ATAG
* * * * * *
28767 ATTTATTTTTTAAATCTTTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTAATCTGAA
63 ATTTATTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAA-TAGTATTATTTTATTTTGAA
* *
28832 TAAGCCTGTATGAAAGAAAACAATTGTTGTATGACAAAATAAAGATCAT
127 TAAACCTGTATGAAAGAAAACAATTGTTTTATGACAAAA-AAAGATCAT
* * *
28881 T-ATGATTTGAGAA-AGATAATTGTTCAAATAGTCATAACTATTTGAATTGGTTTAGTAAATAGA
1 TAATGATTTGA-AATAGATAATTATTCTAATAGTCATAACTATTTGAATT-GTTTGGTAAATAGA
* * **
28944 TTTAGTTTTTAAATCTCTTATTAATTTTTCAAATATTAATAAATCAAAATTATTTTATTTTGAAT
64 TTTATTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAAT-AGTATTATTTTATTTTGAAT
**
29009 AATTCTGTATGAACAG-AAACAATTGTTTTATG----AAAAA-A-CAT
128 AAACCTGTATGAA-AGAAAACAATTGTTTTATGACAAAAAAAGATCAT
** * * * *
29050 TAACAATTTGAAATAGATAATTATTCTAATGGACATGACTATTTGAACTTGTTTGGTAAACAGAT
1 TAATGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGAA-TTGTTTGGTAAATAGAT
*
29115 TTATTTTTTAAATCTCCTACCTATTAATTTGTAAAATATTAATAAAGTAGTATTATTTTATTTTG
65 TTATTTTTTAAATCT-CT---TATTAATTTTTAAAATATTAATAAA-TAGTATTATTTTATTTTG
* * *
29180 AATAAACTTGTAT-AAATAAAAACAATTGTTTTAAGACAAAACAAAAGATCA-
125 AATAAACCTGTATGAAA-GAAAACAATTGTTTTATGAC-AAA-AAAAGATCAT
* * * * * *
29231 TAACT-ATTAGAAATAAAAAATTATTCAAACAGTTATAACTATTTGA
1 TAA-TGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGA
29277 GCTTACTTGG
Statistics
Matches: 323, Mismatches: 48, Indels: 46
0.77 0.12 0.11
Matches are distributed among these distances:
169 6 0.02
170 63 0.20
171 7 0.02
172 3 0.01
173 2 0.01
174 65 0.20
175 6 0.02
176 123 0.38
177 5 0.02
179 1 0.00
180 4 0.01
181 36 0.11
182 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (174 bp):
TAATGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGAATTGTTTGGTAAATAGATT
TATTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAATAGTATTATTTTATTTTGAATAAA
CCTGTATGAAAGAAAACAATTGTTTTATGACAAAAAAAGATCAT
Found at i:29513 original size:22 final size:22
Alignment explanation
Indices: 29466--29543 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 22
29456 CTATTTTTAT
* *
29466 TTAATTTAATT-TAATTTATAAAA
1 TTAA-TTAATTATTATTTA-AATA
29489 TTAATTAATTATTATTTAAATA
1 TTAATTAATTATTATTTAAATA
* *
29511 TTAATTTATTTTTA-TTAAATA
1 TTAATTAATTATTATTTAAATA
*
29532 --ATTTAATTATTA
1 TTAATTAATTATTA
29544 ATATTAATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 9 0.19
21 7 0.15
22 21 0.45
23 10 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTAATTATTATTTAAATA
Found at i:29538 original size:41 final size:38
Alignment explanation
Indices: 29437--29566 Score: 108
Period size: 38 Copynumber: 3.3 Consensus size: 38
29427 ATATAAATAT
* *
29437 TTTAA-TTATATATATTAATCT-ATTTTTATTTAATTTAA
1 TTTAATTTATA-AAATTAAT-TAATTATTATTTAATTTAA
29475 TTTAATTTATAAAATTAATTAATTATTATTTAAATATTAA
1 TTTAATTTATAAAATTAATTAATTATTATTT-AAT-TTAA
* *
29515 TTTATTTTTATTAAA-TAATTTAATTATTAATATTAA-TTAA
1 TTTA-ATTTATAAAATTAA-TTAATTATT-AT-TTAATTTAA
29555 -TTAATATTATAA
1 TTTAAT-TTATAA
29567 TTATTATTAT
Statistics
Matches: 77, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
37 1 0.01
38 22 0.29
39 16 0.21
40 15 0.19
41 17 0.22
42 4 0.05
43 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (38 bp):
TTTAATTTATAAAATTAATTAATTATTATTTAATTTAA
Found at i:29548 original size:22 final size:21
Alignment explanation
Indices: 29490--29563 Score: 75
Period size: 22 Copynumber: 3.6 Consensus size: 21
29480 TTTATAAAAT
29490 TAATTAATTATT-AT-TTAAA
1 TAATTAATTATTAATATTAAA
**
29509 T-ATTAATTTATTTTTATTAAA
1 TAATTAA-TTATTAATATTAAA
*
29530 TAATTTAATTATTAATATTAAT
1 TAA-TTAATTATTAATATTAAA
29552 TAATTAA-TATTA
1 TAATTAATTATTA
29564 TAATTATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
18 5 0.11
19 6 0.13
20 6 0.13
21 10 0.22
22 15 0.33
23 4 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATTAATTATTAATATTAAA
Found at i:29550 original size:58 final size:61
Alignment explanation
Indices: 29441--29572 Score: 173
Period size: 58 Copynumber: 2.2 Consensus size: 61
29431 AAATATTTTA
* * *
29441 ATTATATATATTAATCTATTTTTATTTAATTTAATTTAATTTATAAAATTAATTAATTATT
1 ATTATAAATATTAATCTATTTTTATTTAATATAATTTAATTTATAAAATTAATTAATTAAT
* *
29502 ATT-TAAATATTAATTTATTTTTA-TTAA-ATAATTTAA-TTATTAATATTAATTAATTAAT
1 ATTATAAATATTAATCTATTTTTATTTAATATAATTTAATTTA-TAAAATTAATTAATTAAT
*
29560 ATTATAATTATTA
1 ATTATAAATATTA
29573 TTATTATATA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
57 3 0.05
58 27 0.43
59 12 0.19
60 18 0.29
61 3 0.05
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (61 bp):
ATTATAAATATTAATCTATTTTTATTTAATATAATTTAATTTATAAAATTAATTAATTAAT
Found at i:31100 original size:21 final size:18
Alignment explanation
Indices: 31064--31117 Score: 56
Period size: 20 Copynumber: 2.9 Consensus size: 18
31054 GAATTATTAA
31064 ATTA-ATATTAATATTTC
1 ATTATATATTAATATTTC
*
31081 ATTATTATATATAATAATTTT
1 ATTA-TATAT-TAAT-ATTTC
*
31102 ATTATATATTCATATT
1 ATTATATATTAATATT
31118 AAATTAATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 4 0.13
18 3 0.10
19 7 0.23
20 9 0.29
21 8 0.26
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTATATATTAATATTTC
Found at i:32983 original size:17 final size:17
Alignment explanation
Indices: 32963--33014 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 17
32953 ATTAATTTAT
32963 TTATATTATTTAGAATA
1 TTATATTATTTAGAATA
32980 TTAT-TTATTT---A-A
1 TTATATTATTTAGAATA
*
32992 TTATATAATTTAGAATAA
1 TTATATTATTTAGAAT-A
33010 TTATA
1 TTATA
33015 CATAAATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 11
0.70 0.03 0.28
Matches are distributed among these distances:
12 5 0.18
13 6 0.21
16 7 0.25
17 4 0.14
18 6 0.21
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
TTATATTATTTAGAATA
Found at i:32989 original size:29 final size:30
Alignment explanation
Indices: 32952--33013 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
32942 ATTATGATTA
* *
32952 TATTAATTTATTTATATTATTTAGAAT-AT
1 TATTAATTTAATTATATAATTTAGAATAAT
*
32981 TATTTATTTAATTATATAATTTAGAATAAT
1 TATTAATTTAATTATATAATTTAGAATAAT
33011 TAT
1 TAT
33014 ACATAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.56
Consensus pattern (30 bp):
TATTAATTTAATTATATAATTTAGAATAAT
Found at i:32994 original size:12 final size:13
Alignment explanation
Indices: 32949--32995 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
32939 TTTATTATGA
32949 TTATATTAATTTAT
1 TTATATT-ATTTAT
32963 TTATATTATTTA-
1 TTATATTATTTAT
**
32975 GAATATTATTTAT
1 TTATATTATTTAT
32988 TTA-ATTAT
1 TTATATTAT
32996 ATAATTTAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 15 0.54
13 6 0.21
14 7 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTATATTATTTAT
Found at i:33022 original size:29 final size:29
Alignment explanation
Indices: 32963--33023 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
32953 ATTAATTTAT
* ** *
32963 TTATATTATTTAGAATATTATTTATTTAA
1 TTATATAATTTAGAATATTATACATTAAA
32992 TTATATAATTTAGAATAATTATACA-TAAA
1 TTATATAATTTAGAAT-ATTATACATTAAA
33021 TTA
1 TTA
33024 AATTTTTACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (29 bp):
TTATATAATTTAGAATATTATACATTAAA
Found at i:33579 original size:15 final size:16
Alignment explanation
Indices: 33556--33595 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
33546 TATATTTTTG
33556 TTAATTTAATTTAATA-
1 TTAA-TTAATTTAATAT
33572 TTAATTAA-TTAATAT
1 TTAATTAATTTAATAT
33587 TTAATTAAT
1 TTAATTAAT
33596 AAACAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 12 0.55
16 4 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTAATTAATTTAATAT
Found at i:33951 original size:20 final size:19
Alignment explanation
Indices: 33911--33953 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
33901 ATTATTTATT
*
33911 TATTAATAATTATAGTTAA
1 TATTAATAATTATAGTAAA
33930 TATTAAATAATTATTA-TAAA
1 TATT-AATAATTA-TAGTAAA
33950 TATT
1 TATT
33954 TTATTAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
TATTAATAATTATAGTAAA
Found at i:34056 original size:19 final size:19
Alignment explanation
Indices: 34019--34076 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
34009 ATAAAATGTT
*
34019 TTATATAATTACTAGTATA
1 TTATATAATTAATAGTATA
* *
34038 TTATTTAATTAATATTATAA
1 TTATATAATTAATAGTAT-A
34058 TTACTAATAATATAATAGT
1 TTA-T-ATAAT-TAATAGT
34077 TTAAAAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 15 0.50
20 4 0.13
21 1 0.03
22 4 0.13
23 6 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (19 bp):
TTATATAATTAATAGTATA
Done.