genome.fa.s72.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167897.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61898

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63--121	22	2.7	22	80	12	68	47	0	0	52	1.00
328--371	19	2.3	19	84	0	52	45	0	2	52	1.13
340--439	10	10.0	10	68	22	50	50	2	1	47	1.19
348--392	14	3.3	14	80	20	51	46	0	0	53	1.00
550--613	20	3.2	20	77	2	65	51	1	1	45	1.20
1005--1090	23	3.6	24	79	16	90	51	0	1	47	1.08
1204--1238	13	2.6	13	90	4	52	48	0	0	51	1.00
1305--1387	26	3.2	25	75	20	73	51	3	1	43	1.26
1389--1474	36	2.4	35	78	5	82	50	3	2	44	1.32
2060--3462	499	2.8	494	86	4	1886	30	10	16	42	1.82
3136--3810	348	1.9	347	84	5	907	29	9	18	42	1.82
3611--4766	472	2.5	471	85	6	1520	32	9	16	40	1.82
5405--5463	14	4.4	14	72	18	54	45	0	1	52	1.10
5376--5451	37	2.2	33	82	15	84	44	0	1	53	1.08
5498--5538	15	2.9	15	85	7	50	58	0	0	41	0.98
5639--5680	8	5.5	8	77	11	52	52	0	0	47	1.00
6528--6558	16	2.0	15	93	6	53	41	0	0	58	0.98
6670--6738	14	4.7	15	81	10	81	44	1	1	52	1.19
6820--6861	21	2.0	21	90	0	66	52	0	0	47	1.00
6848--6902	18	2.9	19	74	15	51	52	0	5	41	1.24
7524--7570	17	2.7	18	81	15	55	38	0	0	61	0.96
7558--7606	14	3.3	15	83	8	57	36	2	2	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7525--7613	15	6.7	13	80	13	60	38	1	1	59	1.12
8308--8638	181	1.8	181	83	3	443	41	8	9	40	1.69
8744--8906	88	1.9	88	87	5	240	39	5	7	47	1.55
9302--9355	14	4.2	13	73	17	51	57	0	3	38	1.17
9300--9364	18	3.3	20	72	25	59	56	0	6	36	1.24
9431--9471	19	2.1	19	86	9	55	51	0	0	48	1.00
9552--9605	24	2.3	24	81	9	58	48	1	0	50	1.11
10183--10207	13	1.9	13	100	0	50	44	0	8	48	1.32
10175--10214	12	3.2	12	86	6	53	40	0	7	52	1.30
10244--10333	27	3.6	27	77	14	77	48	1	2	47	1.21
10313--10355	20	2.2	20	83	8	52	51	0	2	46	1.13
10375--10434	31	2.0	30	84	15	79	58	1	0	40	1.08
11031--11076	15	2.9	16	78	12	51	43	0	2	54	1.12
11228--11270	18	2.6	16	81	7	50	60	0	0	39	0.97
11886--11946	27	2.2	29	80	11	74	49	0	0	50	1.00
12017--12076	19	3.4	16	79	20	59	50	1	1	46	1.21
12018--12087	36	1.9	36	83	11	90	47	1	2	48	1.25
12280--12324	14	3.1	14	81	9	54	57	2	0	40	1.11
12441--12524	42	2.0	42	81	9	100	50	1	3	45	1.27
12460--12514	25	2.2	24	84	9	67	52	1	3	41	1.29
12903--12958	25	2.2	25	78	9	60	50	3	3	42	1.37
13248--13294	16	3.1	15	79	17	53	44	0	4	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13542--13569	14	2.0	14	100	0	56	42	14	7	35	1.73
13761--13868	22	5.2	21	70	23	68	47	1	0	50	1.18
13824--13879	15	3.7	15	77	15	53	48	1	0	50	1.11
13834--13880	18	2.6	19	76	6	53	44	2	0	53	1.12
14410--14442	7	4.6	7	92	7	57	45	0	0	54	0.99
14410--14459	14	3.5	15	83	8	68	46	0	0	54	1.00
14523--14585	27	2.3	27	83	5	74	44	3	3	49	1.34
14631--14692	23	2.7	23	89	0	97	46	0	0	53	1.00
14633--14705	23	3.2	23	86	5	96	46	0	0	53	1.00
14945--14981	13	2.9	13	84	15	51	48	0	0	51	1.00
14946--15038	30	3.1	31	77	14	90	48	2	1	48	1.20
14938--14991	18	3.1	18	76	15	60	46	0	0	53	1.00
15097--15133	14	2.6	14	91	4	56	59	2	0	37	1.12
15166--15216	20	2.5	20	80	0	57	50	0	1	47	1.12
15619--15695	25	3.0	25	83	11	86	51	0	0	48	1.00
15631--15718	21	4.0	21	75	17	72	50	0	1	48	1.08
15629--15715	17	5.6	17	70	24	59	51	0	1	47	1.08
15832--15866	13	2.6	13	90	4	52	48	0	0	51	1.00
15937--16019	26	3.2	25	75	20	73	51	3	1	43	1.26
16033--16110	36	2.2	35	81	2	84	50	2	2	44	1.29
16173--16218	16	2.7	16	86	10	56	56	6	0	36	1.25
16699--18095	498	2.8	494	86	3	1890	31	9	16	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18259--20875	472	5.5	472	83	5	3028	31	10	16	40	1.83
21230--21297	25	2.5	27	77	18	70	50	1	4	44	1.31
21289--21351	30	2.1	29	82	8	74	46	0	3	50	1.17
21710--21734	13	1.9	13	100	0	50	64	0	4	32	1.12
22623--22661	14	2.8	14	84	7	53	58	0	2	38	1.12
22678--22755	20	4.0	20	69	18	56	47	0	0	52	1.00
22678--22774	13	7.7	13	68	25	50	48	0	0	51	1.00
22837--22902	14	5.0	14	71	17	52	48	1	0	50	1.10
22846--22899	24	2.3	24	81	9	58	48	1	0	50	1.11
23367--23391	13	1.9	13	100	0	50	56	8	0	36	1.29
23464--23488	13	1.9	13	100	0	50	44	0	8	48	1.32
23456--23495	12	3.2	12	86	6	53	40	0	7	52	1.30
23549--23615	27	2.5	27	80	7	73	55	0	2	41	1.15
23657--23716	31	2.0	30	84	15	79	58	1	0	40	1.08
24214--24249	17	2.1	17	89	0	54	50	0	0	50	1.00
24340--24405	15	4.6	14	70	12	53	46	1	1	50	1.20
26972--36536	476	20.0	477	74	11	6657	39	17	11	31	1.85
26972--59013	951	33.0	951	68	15	11262	39	17	11	30	1.86
34676--36536	472	3.9	474	80	6	2072	39	17	11	31	1.86
38007--54079	477	33.3	476	73	13	9667	39	18	12	30	1.87
38007--59013	943	21.8	952	72	13	13618	39	18	12	30	1.87
44536--46425	478	3.9	476	84	6	2247	38	18	12	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45401--46345	499	1.9	501	85	2	1299	39	17	11	30	1.86
49648--54079	474	9.2	476	83	6	5221	39	18	12	30	1.87
52671--52718	23	2.1	23	88	0	69	45	14	10	29	1.78
56011--59013	473	6.4	472	79	6	3074	39	18	12	30	1.87
59129--61840	475	5.7	469	79	10	2584	38	18	11	31	1.87

Tables:   1

The End!