Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167899.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60230
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Found at i:547 original size:17 final size:16
Alignment explanation
Indices: 527--580 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
517 TTTTTAGGAC
*
527 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
544 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
561 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
578 TTT
1 TTT
581 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:1978 original size:13 final size:13
Alignment explanation
Indices: 1960--1992 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
1950 ATTTTTTTGC
1960 TATTTTTTGTA-T
1 TATTTTTTGTATT
*
1972 TATTTTTGGTATT
1 TATTTTTTGTATT
1985 TATTTTTT
1 TATTTTTT
1993 TTTGTATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (13 bp):
TATTTTTTGTATT
Found at i:3103 original size:26 final size:25
Alignment explanation
Indices: 3074--3125 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
3064 CCAGTCCGAT
3074 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACT-CGTATG
*
3100 CTTAGACTGGGAATGAACTCGTATG
1 CTTACACTGGGAATGAACTCGTATG
3125 C
1 C
3126 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTACACTGGGAATGAACTCGTATG
Found at i:3976 original size:24 final size:26
Alignment explanation
Indices: 3944--3994 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
3934 TCCGTCCGAT
3944 CTTACACT-GGAATGAACTC-GTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
3968 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
3994 C
1 C
3995 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 11 0.46
26 6 0.25
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:4854 original size:26 final size:26
Alignment explanation
Indices: 4825--4874 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4815 CCGGACCGAT
* *
4825 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
4851 CTTAGACTAGGAATGAACTCCGTA
1 CTTACACTAGGAATGAACTCCGTA
4875 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:5800 original size:26 final size:26
Alignment explanation
Indices: 5722--5793 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
5712 TCGATCTGAT
* *
5722 CTTACACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5748 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5774 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
5794 TATATGCGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6657 original size:26 final size:26
Alignment explanation
Indices: 6628--6680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6618 CTGGTCCGAT
6628 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
6654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
6680 C
1 C
6681 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:7457 original size:880 final size:883
Alignment explanation
Indices: 2050--9145 Score: 9931
Period size: 880 Copynumber: 8.0 Consensus size: 883
2040 GATGTCAACA
** *
2050 CACATCATGTGCGCACA-CCCCCGCCCCCTTCAATCGTC-GAACCCCCAATGCCACCGGTCAGGT
1 CACATCATGTGCGCACACCCCCCGCCCCC--CAATCACCGGAA-CCCCAATGCCGCCGGTCAGGT
* **
2113 TCTCCGACGATGCTCCGACATGGTG-CCCGGGCAAAAAAAATATGGCACCAGCACATGCCCGAGC
63 TCT-C--CGA-GCT-CG--ATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGC
2177 CCAGCATGTGCTACCCGC--CCTC-GTCC-GTCCGATCTTACACTACACTGGGAATGAACTCCGT
121 CCAGCATGTGC-ACCCGCAACCTCGGTCCGGTCCGATC-T----TACACTGGGAATGAACTCCGT
2238 ATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTC
180 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
2301 ACCGGCCAGAGGGGCAGGATGCACAAGC-GGGATCGATCGGGTCCCCTCT-CCTGCTACCGATCC
245 ACCGGCCAGAGGGGCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCCTGCGTGCTATCGATCC
* * *
2364 TGCTG-CACAACCCTC-GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
310 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
2427 -CGACAAAACGAGC--GCGGGC-GGCACTACG-CGGCCAGAGAGGC-GGATGCGCAAGCCGTGGA
375 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
2486 TCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
440 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
2550 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
505 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
2615 TTTCTATTTTT-ACGATTTTTGAAACTTTTTACGGTTCGAG-TTTTTTTAAAA-TTTTTCAGAAG
570 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
2677 GAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGT-TTTTT-TTGGCATGCACAAAAAAATTC
635 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
2739 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
700 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
2804 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCA
765 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
2868 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
830 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
2922 CACATCATGTGCG--CACCCCCCGCCCCCCAAT--CCGGAA-CCCAATGCCG-CGGTCAGGTTCT
1 CACATCATGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
2981 CCGGCGATGCTGGATGGTGCCCCGGGCAAAAAAAAT--GGCACCAGCACATGCCTCGAGCCCAGC
66 -C--CGA-GCTCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCC-CGAGCCCAGC
* * * *
3044 ATGTCCACCCACAACC-CTGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
126 ATGTGCACCCGCAACCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
*
3108 GGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGC-GCCAGAG
191 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACCGGCCAGAG
* * * * *
3170 GGGCAGGAT--GCAAGCCGGGATCGACCGGGTCCCCCCTGCGTGCTGTCGAT-CTGCTACTGCAA
256 GGGCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAA
* *
3232 CCCTCAGT-CAGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
321 CCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
*
3295 AGCGGGCGGGCGGGCACTATGCC-GCCAGAGA--CGGGAT--GCAAG-CGTGGATCGATATGGTA
386 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA--G--
3354 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
447 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
3419 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
512 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
3484 TTTT--CGATTTTTTGAAACTTTTTAC-GTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTT
577 TTTTCACGA-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
*
3546 TGGCCCCAAACTTGGTAGACATGATCCTTGT-TTTTT-TTGGCATGCAC-AAAAAATTCAGCTAA
641 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
3608 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
706 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
3673 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
771 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
3738 GATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
836 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
**
3785 CACATCATGTGCGCACACCCCCCGCCCCCCAAT--CCGGAA-CCCAATGCCATCGGTCAGGTTCT
1 CACATCATGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
3847 CCGGTGATGCTCCGCGATGGTG-CCC--GCAAAAAAAATACGCAGCACCAGCACATGCCCGAGCC
66 CC---GA-GCT---CGATGGTGCCCCGGGCGAAAAAAAT--GCGGCACCAGCACATGCCCGAGCC
* *
3909 CAGCATGTGCACCCGTAACCCTAGGTCC-GTCCGATCTTACACT-GGAATGAACT-CGTATGCTT
122 CAGCATGTGCACCCGCAA-CCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTT
* * *
3971 AGACTGGGAATGAACTCTGTATGCCTAAGTCAA-CCACGAAACGAGCG-G-GTGCGCTCAGCGG-
186 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACCGGC
* *
4032 CAGAGGGGCAGGAT--GCAAGCCGGGATCG--CCGGTCCCCCCTGCGTG-T-TGCGATCCTGCTG
251 CAGAGGGGCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCCTGCGTGCTAT-CGATCCTGCTG
* * * *
4091 --TCAA-CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
315 CCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
4153 GAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
380 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
4217 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
445 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
4282 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
510 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
4347 ATTTTTTACAATTTTTGAAACTTTTTACAGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTT
575 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTT
4412 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
640 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
4477 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAA
705 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
4541 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
770 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
4606 CGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
835 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** * *
4655 CGCATCATGTGCCCACACCCCCCCCCGCCCCACCAATTGCCAGAACCCCAATGCCGCCGGTTAGG
1 CACATCATGTGCGCACA---CCCCCCGCCCC-CCAATCACCGGAACCCCAATGCCGCCGGTCAGG
* * ** * *
4720 TTCTCCGGCGATCCTCCGGCGATGGTGCCTCGGGTAAAAAAAATCGTGGCACCAGCACAT-CCTT
62 TTCT-C--CGA-GCT----CGATGGTGCCCCGGGCGAAAAAAAT-GCGGCACCAGCACATGCC-C
* * * * * *
4784 GAGCCCAGTATGGGCATCCGCAGCCCTCGGTCCGGACCGATCTTACATTGGGAATGAACTCCGTA
117 GAGCCCAGCATGTGCACCCGCA-ACCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTA
* * * * *
4849 TGCTTAGACTAGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACGACCGTGCGGGCACTCA
181 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
4914 GCTGGCCAGAGTGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCTCTCTGTGTGCTATCGAT
246 -CCGGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGATCGGGTCCC-CCCTGCGTGCTATCGAT
* * * * * * * * *
4979 CCTACTGCCACATCCCTCAGTCGGGTTCAATCTTAGATTGGGAATGAACTCCATATGACTAAGCC
308 CCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
5044 AACCGACGAAACGAGCGGGTGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCATG
373 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
5109 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
438 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
5174 ATGGCTTGTAAATTCATAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
503 ATGGCTTGTAAATTCAT-ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
*
5239 CGTTTTCTATTTTTCACTGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCA
567 CGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
5303 GAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
631 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
5367 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
696 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
5432 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
761 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
5497 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
826 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
5555 CACATCATGTGCACACACCCCCTCCCGCCCCCTAATCACCGGAACCCCAATGCCGCCAGTTAGGT
1 CACATCATGTGCGCACA--CCC-CCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGT
* * * * ** *
5620 TCTCCGACGATGCTCCGACGATGATGCCCCGAGCGAAAAAAATACGACACCAGCAGTTG-CGGAG
63 TCT-C--CGA-GCT----CGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAG
5684 CCCAGCATGTGCACCCGCAACCCTTGATTCGATCTGATCTTACACTGGGAATGAACTCCGCATGC
120 CCCAGCATGTGCACCCGCAA-CC-----TCG----G----T-C-C---G---G---TCCG-AT-C
* * ** *
5749 TTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATATGCGTAAGTCAACCCA
158 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
5814 CAAAACGAGTGTGCGAGAGCTCAGCCGGCCAGAGGGGTATGATGCACAAGCTGGGGATCGACCGG
223 CGAAACGAGCGTGCGGGCGCTCA-CCGGCCAGAGGGGCAGGATGCGCAAGC-GGGGATCGATCGG
** * * *
5879 GT-CCCCCTATGTCCTATCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGGACTGGG
286 GTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTA-GACTGGG
* *
5943 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACAACGTC-GCCAG
350 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
*
6007 AGAGG-GGGATGCGCATGCC-TGGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
415 AGAGGCGGGATGCGCAAGCCGTGG-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
6070 TTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGATG
479 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
6134 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAGATTTTTGAAAACTTTTTACGGTT
544 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTG-AAACTTTTTACGGTT
* *
6199 CGGGATTTTTTAAAAATTTTTTCAG-AGGA-TTTTGG-CCCAAACATTGGT-GACGTGATCCTTG
607 CGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTG
6260 TATTTTT-TTGGCATGCAC-AAAAAATTCAGCTAAAAA-TCGAAGTGTACAGGA-TTTGTGACCA
671 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
6321 TTTGAAAAAAGTGTCCCC-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
736 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
6385 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-C
801 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
6449 -AGTACCAGCACCCATCG
866 AAGTACCAGCACCCATCG
*
6466 CACATCATGTGCGCAC-CCCCCCACGCCCCCAATC-CGTCGGAACCCCAATGCCGCCGGTCAGGT
1 CACATCATGTGCGCACACCCCCCGC-CCCCCAATCAC--CGGAACCCCAATGCCGCCGGTCAGGT
** **
6529 TCTCCGATGCTCCGACGATGGTGCCCCCAGCGAAAAAAATATGGCACCAGCA-ATGCCCGAGCCC
63 TCTCCGA-GCT----CGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
6593 AGTCATGTGCACACACAACCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
123 AG-CATGTGCACCCGCAACCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * *
6658 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACGGCC
187 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACCGGCC
* *
6723 AGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCCTGCATGCTATCGATCCTGCTAC
252 AGAGGGGCAGGATGCGCAAG-CGGGGATCGATCGGGTCCCCCCTGCGTGCTATCGATCCTGCTGC
* * ** * *
6788 CGTAACTCTCAGTCCAATCCGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCCAACCGACG
316 CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* ** * * *
6853 GAACGAGCAAGCGGGCGGGCACTACGCCGGCCAAAGAGTCGGGATGCGCAAGCCGTAGATCGATA
381 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
*
6918 GGGTGGTAGGTGGGTTTAGGCAC-TCTCCATATTTCT-CCATGCCAATGCCA-TTTTATGGCTTG
446 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
*
6980 TAAATTCATACAATGCGT-CCTTAAGCCTTCATGTGAAAGTTTCATGGCAAGACGACTCGTCTTC
511 TAAATTCATACAATG-GTCCCTTAAGCCTTCATGTG-AAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
7044 TATTTTTCATGATTTTTGAAACTTTTTACGATTTGAGATTTTTTTAAAATTTTTTTAGAAAGAGT
574 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGT
* * * * *
7109 TTTGGCCCCACACTTGGTAGATGTGATACTTTTATTTTTGTTGGCATGCACAAAAAAATTTAGCT
639 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
7174 AAAAACTCAAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTA
704 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
7239 ATGGCTACTGACAGCAAACCTATAAGATCTTAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGT
769 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
7304 TTGATGAGGGATAGAGGGCCAATATATGGGCCAAGTACCAGCACCCATCG
834 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * ** * *
7354 CATATCATATGCGCACACCCTCCGCCCCCCAAGCACCGGAACCCCAATGATGCCGATTTAGGTTC
1 CACATCATGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCG-GTCAGGTTC
* * * * *
7419 TCCG-G-T-GATGGTGCCCTGGGCGAAAAAAATGCGGCACCAGCACATTCTCAAGCCTAGCATGT
65 TCCGAGCTCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
7481 GCACCCTCAACCCTTGGTCCGGTCCGATCTTACACT-GGAATGAAGTCCGTATGCTTAGA-TTGG
130 GCACCCGCAA-CCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
7544 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTCAGCCAGCCAGAGGG
194 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-CCGGCCAGAGGG
* * * * **
7609 GCAGGATGCACAAGCCGGGATCGGTCGGGT-CCCCCTACGTGCTGCCGATCCTGCTGCCGCAACC
258 GCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACC
* *
7673 CTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
323 CTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
7738 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
388 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
7803 AGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
453 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
7868 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
518 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
7933 CGA-TTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCCCC
583 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
7995 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
648 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
8060 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
713 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * **
8125 GGCAGCAAACCTGTAAAATCTCAAATGCCCTTTATGGGGGTGTGAGTTTTTAAGGTTTGATGAGG
778 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
8190 GATAGGGGGCCAATATAAGAGCCATGTACCAGCACCCATTG
843 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** * *
8231 CACATCATGTGTGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGCCGCTAAGGTTCT
1 CACATCATGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
8296 CCGA--T-GATGGTGCCCCGGGTGAAAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCATGTG
66 CCGAGCTCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * * * * *
8358 CACCCGTGACCCTTGGTCCGATCTGATTTTACATTGGGAATGAACTCCATATGTTTAGACTGGGA
131 CACCCG-CAACCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
8423 ATGAACTCCGTATGCCTAAGTCAACCCACGAAGCGAGCGTGCGGGCGTCTAACCGGCCAGAGGGG
195 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-CTCACCGGCCAGAGGGG
* * * * ** * * *
8488 CAGGATGCGTAAGTCGAGGATCGATCGGGTCCCCCACTACATGCTGCCGATCCTACTGCTGCAAT
259 CAGGATGCGCAAG-CGGGGATCGATCGGGTCCCCC-CTGCGTGCTATCGATCCTGCTGCCGCAAC
* * * *
8553 CCTCGGTCCGGTTCGATCTTAG-CTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAA
322 CCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* ** * *
8617 ACGAACGGGCGGGCACTACACCTGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
387 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
8682 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
452 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
8747 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
517 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
**
8812 ACGATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
582 ACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
*
8876 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
646 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
8941 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
711 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
9006 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
776 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
9071 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
841 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
9114 CACATCATGTGCGCACA-CCCCC-CCCCCCAATC
1 CACATCATGTGCGCACACCCCCCGCCCCCCAATC
9146 GTCGAACCTT
Statistics
Matches: 5649, Mismatches: 393, Indels: 355
0.88 0.06 0.06
Matches are distributed among these distances:
856 5 0.00
857 75 0.01
858 51 0.01
859 90 0.02
860 10 0.00
861 50 0.01
862 187 0.03
863 237 0.04
864 149 0.03
865 211 0.04
866 61 0.01
867 107 0.02
868 56 0.01
869 185 0.03
870 133 0.02
871 15 0.00
872 13 0.00
873 11 0.00
874 5 0.00
876 94 0.02
877 327 0.06
878 290 0.05
879 282 0.05
880 614 0.11
881 242 0.04
882 42 0.01
883 323 0.06
884 26 0.00
885 30 0.01
886 110 0.02
887 20 0.00
888 64 0.01
889 7 0.00
890 5 0.00
891 8 0.00
892 1 0.00
893 8 0.00
894 7 0.00
895 11 0.00
896 1 0.00
897 24 0.00
898 70 0.01
899 291 0.05
900 256 0.05
901 28 0.00
902 3 0.00
905 2 0.00
906 56 0.01
907 18 0.00
908 12 0.00
909 27 0.00
910 1 0.00
911 33 0.01
912 2 0.00
913 109 0.02
914 28 0.00
915 16 0.00
916 18 0.00
917 11 0.00
918 105 0.02
919 53 0.01
920 90 0.02
921 58 0.01
922 64 0.01
923 111 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
CACATCATGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCT
CCGAGCTCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CACCCGCAACCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCACCGGCCAGAGGGGCA
GGATGCGCAAGCGGGGATCGATCGGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTC
AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
Found at i:9280 original size:26 final size:26
Alignment explanation
Indices: 9244--9301 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
9234 CAAGCCCAGT
9244 GTATACTTAGACTGGGAATGAACACC
1 GTATACTTAGACTGGGAATGAACACC
* *
9270 GTATGCTTAGACTGGGAATGAACTCC
1 GTATACTTAGACTGGGAATGAACACC
9296 GTATAC
1 GTATAC
9302 CATTTTACGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (26 bp):
GTATACTTAGACTGGGAATGAACACC
Found at i:10603 original size:26 final size:26
Alignment explanation
Indices: 10567--10624 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
10557 CAAGCCCAGT
*
10567 GTATACTTAGACTGGGAATGAACACC
1 GTATGCTTAGACTGGGAATGAACACC
*
10593 GTATGCTTAGACTGGGAATGAACTCC
1 GTATGCTTAGACTGGGAATGAACACC
10619 GTATGC
1 GTATGC
10625 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GTATGCTTAGACTGGGAATGAACACC
Found at i:12265 original size:11 final size:12
Alignment explanation
Indices: 12249--12282 Score: 61
Period size: 11 Copynumber: 2.9 Consensus size: 12
12239 CGGTCAAGTT
12249 CTCCGACGATG-
1 CTCCGACGATGC
12260 CTCCGACGATGC
1 CTCCGACGATGC
12272 CTCCGACGATG
1 CTCCGACGATG
12283 GTGCCCCGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.18, C:0.38, G:0.26, T:0.18
Consensus pattern (12 bp):
CTCCGACGATGC
Found at i:12400 original size:26 final size:26
Alignment explanation
Indices: 12364--12416 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12354 CCGGTCCGAT
12364 CTTACACTGGGAATGAACACAGTATG
1 CTTACACTGGGAATGAACACAGTATG
* * *
12390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACACAGTATG
12416 C
1 C
12417 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACAGTATG
Found at i:13286 original size:26 final size:26
Alignment explanation
Indices: 13257--13306 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13247 CTGATCCGAT
13257 CTTACACTGGGAATGAACTCCGTACG
1 CTTACACTGGGAATGAACTCCGTACG
*
13283 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
13307 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTACG
Found at i:14178 original size:25 final size:26
Alignment explanation
Indices: 14150--14201 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14140 CTGGTCCGAT
14150 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
14175 CTTAGATTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14201 C
1 C
14202 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15324 original size:898 final size:895
Alignment explanation
Indices: 9397--22385 Score: 16380
Period size: 899 Copynumber: 14.6 Consensus size: 895
9387 TGGCATGCAC
*
9397 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*** * *
9462 CTCTTTAAAAAGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCTAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * * *
9527 ACCAGCAGCCATTGTACATCATTTGCACACACCCCCTGCC-CCCCCAATCGTCAGAACCCCAATG
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCC--CCGCCCCCAATCGCCGGAACCCCAATG
* * * * * ** *
9591 CCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCTGGGC--AAAAAAAATACGGTAA
194 CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACAC
* * * * *
9654 CAGCA-ATGCCCAAGCCCAGCATGTGCA-CCAC-ACCCT-GGTTCTGGTTCGATCTTAAACTGGG
259 CAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGG-TCTGATCCGATCTTACACTGGG
*
9715 AATGAACTCCATATGCCTTAGA-TGGG-ATGAATCTCCGTATGCGCTAAAGTCAACCCAACGAAA
323 AATGAACTCCGTATG-CTTAGACTGGGAATGAA-CTCCGTATGC-CT-AAGTCAACCC-ACGAAA
* * * * *
9778 CGAGCATGCGGGCGCTCAGCTGGCTAGAGGGGCAGGATGC-GAAGCCGGGGATTCGGTCGATGTG
383 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGA-TCGGTCG-GGT-
* * ** * * ** ** ** * *
9842 CCCTCTTGTGTGCTTCTGATCCTATTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAAT
445 CCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAAT
* * *
9907 GAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGAGGGCA-TCACGTCCGGCCAGA
510 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT-AC--CTGGCCAGA
9971 GA-GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
572 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
10035 CTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
637 CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
** * ***
10100 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCAAA
702 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG
* * * * *
10165 ATTTTTTAAAAATTTTTCCAAAAGGAGTTTTGGGCCCAAACTTGGTAGACATGATCCTTGTATTT
767 ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
10230 TTGTTGGCATGCA-AAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTAGTGACCATTTG
832 TTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* *
10294 AAAAAAGTGTCCCCATTTCAAACACTTTAATGG-TACTGGTAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
10358 CTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
10422 ACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC-ACCCTAATCGTCGGAACCCTAATACT
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGCC
* * * * * * * * *
10484 GTCGCTCAGGTTCTCTGGCGATGCTCTGGCGATGGTGCCCCGAGCG-TAAAAAAATACGACACCA
196 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACCA
* *
10548 G----TG--C-ATGCCCA--A---G---CC-C-A------GTGT-AT---A-CTTAGACTGGGAA
261 GCACATGCCCGA-GCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAA
* * *
10585 TGAACACCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT
325 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
10650 GCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAG-CAGGGATCGATCGGGGT-CCCCCTGC
390 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTC-GGGTCCCCCCTAC
* * **
10713 ATGCTGCCGAT-CTGCTGCC-CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
454 GTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * *
10776 AT-CCTAAGCCAACTGACGAAACGAGGGGGCGGAC-GGCACTACGC-GGCCAGAGAGGC-GGATG
519 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-CTGGCCAGAGAGGCGGGATG
* *
10837 CGCAAGCCGTGG-TGGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTATCCATGCC
583 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCC
10900 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
647 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * *
10965 GCAAGACGACTCATTTTCTATTTTTCAACGAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
712 GCAAGACGACTCGTTTTCTATTTTTC-ACG-ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
*
11030 AAAATTTTTTCAGAAAGGAGTTTT-GCCCCCAACTTGGTAGATCGTGAT-CTTGTATTTTT-TTG
775 AAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTGTTG
11092 GCATG--CAAAAAAATTCAGCTAAAAACTC-AAGGTGTACAGGATTTTGTGACCATTTG
838 GCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAGGATTTTGTGACCATTTG
* * *
11148 AAAAAAGTGTCCCTATTTCAAACACTTTAATGG-TACTGGCAGCAAGCCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
11212 CTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGG-CAATATAAGGGCCAAG
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAG
* * * * *
11275 TACCAGCACCCATCACACATTATGTG-GCAAACCCCCCAC-CCCCGAAATCGCCCGAACCCCAAT
130 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGCCCC-CAATCGCCGGAACCCCAAT
* * ** * * *
11338 GCCGCCGGTCAGGTTTTTCGGTGATGCTCCCG-TGATGGTGCCCCAGGCGAAAAAAAAATGCGCC
193 GCCGCCGGTCAGGTTCTCCGACGATGCT-CCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGAC
* * * * *
11402 ACTACCGCATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACATTGG
257 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGG
* * * * *
11467 GAAAGAACTCCGTATGCTTAGACTGGGAATGAATTTCGCATGCCTAAGTCAACCCACAAAACGAG
322 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
11532 CGTGTGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCACAAGCTGAGAATCGGTCGGGTCCCCCCT
387 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCT
* * * * * ** *
11597 GCGTGCTACCAATCCTGCTGCCGCAATCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCC
452 ACGTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* *
11662 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
517 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACCT-GGCCAGAGAGGCGGGA
*
11727 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
581 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
*
11792 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTCAT
646 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* *
11857 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTA
711 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTA
* *
11922 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCA
776 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
11987 TGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTTGTGACCATTTG
841 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA-TTTTGTGACCATTTG
12042 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
12106 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
12170 ACGCAGCACCCATCGCACATCATGTGCGCACACCCCCGCC-CCCCCAATCGCCGGAAACCCCAAT
131 AC-CAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGCCCCCAATCGCCGG-AACCCCAAT
* *
12234 GCCACCGGTCAAGTTCTCCGACGATGCTCCGACGATGCCTCCGACGATGGTGCCCCGGGC-AAAA
193 GCCGCCGGTC-A-------G--G-TTCTCCGACGATG-CTCCGACGATGGTGCCCCGGGCGAAAA
* * * * * *
12298 AAAAAAGCAACACCAGCACATGCCCGAACCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCCGA
246 AAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGA
* *
12363 TCTTACACTGGGAATGAACACAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
311 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * **
12428 GATC-AAACTAGCGTGCGGGCGTTCAGCCGACCAAAGGGGCAGGATGCGCAAGCAGAGGATCGAC
376 CA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGT
* * * * ** *
12492 CGGG-CCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTT-GATCCATTTTGATCTTAGACT
440 CGGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTTAG-TCCGGTCTGATCTTAGACT
* * *
12555 GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGCCACTAGGCC-AG
504 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA--CCTGG
*
12619 ACAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCA
567 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
12683 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
632 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
12748 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
697 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* *
12813 TCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
762 TCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
12878 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
827 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
12943 TTTG
892 TTTG
12947 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
13012 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * **
13076 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCCCAATCGTCGGAACCCTAACACC
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGCC
* * *
13141 GCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCA
196 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACCA
*** * *
13206 GCACATGGTTGAGCCCAGAATGTGCACCCACAACCCTCGGTCTGATCCGATCTTACACTGGGAAT
261 GCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAAT
* * * * *
13271 GAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGACCGTT
326 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* ** * * * * *
13336 CGGGCGCTTAGTTGGCTAGTGGGGCAGGATGCACAAGCCGGGGATCAG-CAGGGTCCCCCTTGCG
391 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTC-GGGTCCCCCCTACG
** * * * * * * * *
13400 TGCTGTTGATCCTGCTAG-TACAACCCTCAATCTGATCTGATCTAAGATTGGGAATGAACTCCAT
455 TGCTGCCGATCCTGCT-GCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
13464 ATGCCTAAGCCAAACGACGAAACGAGCGGACGGGCGGCCACTAGGCC-GGCCAGAGAGACGGGAT
519 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA--CCTGGCCAGAGAGGCGGGAT
* * *
13528 GCGCAAGTCGTGGATCGATAAGGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
582 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
13593 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
647 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
13658 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTACGGTTCGGGATTTTTTTAA
712 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAA
*
13722 AATTTTTTCAGAA-GAGTTTTGGCCCC-AACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCAT
777 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
13785 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
842 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
13839 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
13904 CTCTTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
66 CTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
13969 TACCAGCACCCATTGCACATCATGTGCGCACACCCCCGC-CCCCCAATCGCCGGAACCCCAATGC
130 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGC
* * * *
14033 CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAAATACGGCACC
195 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACC
*
14098 AGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACT-GGAA
260 AGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAA
* * *
14162 TGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGT
325 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** *
14227 GTGGGCG-TCAAACCGGCCAGAGGGGCAGGA-GCGCAAGCCGAGGATCGACCGGGTCTCACCCTA
390 GCGGGCGCTC-AGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTC-CCCCCTA
* * * * ** *
14290 CATGCTGGCAATCCTGCTGCCACAACCCTAAGTTTGGTCTGATCTTAGACTGGGAATGAACTTCG
453 CGTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
** * * * *
14355 TATGCCTATCCCAATCCGTA--AAACGAGCGGGCGGGCGGACACTACGTCGACCAGAGAGGCAGG
518 TATGCCTAAGCCAA-CCG-ACGAAACGAGCGGGCGGGCGGGCACTACCT-GGCCAGAGAGGCGGG
* *
14418 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATG
580 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* * *
14483 CCAATGCCATTTTTATGGCTCGTAAATTGATACAATGGTCCCTTAAGCCTTCATGCGAAGTTTCA
645 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * **
14548 TGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCAAGATTTTTTT
710 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
* ** *
14613 AAAATTTTTTCAGAACGAGTTTTTTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGG
775 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * * *
14678 ATGCAAAAAAAAAAATCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTA
840 ATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* *
14735 AAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
14800 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * ** *
14865 ACCAGCACCCATTGCACATTATGTGCGTACACCCCCCCGCCTCCCAATCATCGGAACCCCAACGC
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCC-CCCAATCGCCGGAACCCCAATGC
* * * *
14930 CACCAAGT-AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGCGAAAAAAATATGCGACAC
195 CGCC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACAC
* * *
14994 CAGCACATGCCCGAGCCTAGCATGTGCACCCGTAACCATCGGTCTGATCCGATCTTACACTGGGA
259 CAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGA
** * *
15059 ATGAACTATGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCGAA-CCACGAAACGAGC
324 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGC
* * * * ** * *
15123 GTGCGGGTGCCCAACCGACCAGAGGGGCAGGATGCACAAGTAGGGGATTGGTCGGGTCCCCCCTG
388 GTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTA
* * * * **
15188 TGTGCTGCCAATCCTACTACCACAACCCTTAGTTTGGTCT-AGTCTTAGACTGGGAATGAACTCC
453 CGTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGA-TCTTAGACTGGGAATGAACTCC
* * * * * * * *
15252 GTATGCCGAAGCCAACCAACGAAACGAGTGAGCGGACGGGTACTACACTGACCAGAGAGGTGGGA
517 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-CTGGCCAGAGAGGCGGGA
*
15317 TGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
581 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
15382 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
646 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* * * ***
15447 GGCAAGACAACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAAATTTTTTTA
711 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTA
* * *
15512 AAATTTTTCCAAAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTA-TTTT-TTGGCA
776 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
15575 TGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAGGATTTTGTGATCGTTTG
841 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* *
15630 AAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
15695 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
15760 ACCAGCACCCATCGCACATTATGTGCGTAAACCCCCCCCCCGTCCCCCAATCGCCCGAACCCTAA
131 ACCAGCACCCATCGCACATCATGTGCG--CA-CACCCCCCCG-CCCCCAATCGCCGGAACCCCAA
* * * ** * * *
15825 TGCCACCGGTCAGGTTCTCCGACGATGCTCCCG-TGATGGTGCCTCAAGCG-AAAAAATATGTGC
192 TGCCGCCGGTCAGGTTCTCCGACGATGCT-CCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGA
** * * ** * *
15888 CACCAGCACATGCTTGAGCCCAGCATGTGCACTCACAACCCTCAATCCGATCCGATCTTACACTA
256 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTG
* *
15953 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGA
321 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
16018 TCGTGCAGGCGCTCGGTCGGGCAGAGGGGCAGGATGCACAAGCTGGGGATTGGTCGGGTCCCCCC
386 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCC
** * ** * *
16083 CTACGTGCTATCAATCCTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGAATGGGAATGAACT
450 CTACGTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * * * *
16148 CCGTATGCCTAAGCTAACCAACGAAACGAACGGGCTGGCAGGCACTACGTCGGCCAGAGAGGCGG
515 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACCT-GGCCAGAGAGGCGG
* * * * **
16213 GATACGGAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATATTTTGCTG
579 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCCA
16278 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
643 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
16343 CATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTCTTACGGTTCGAGATTTTT
708 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * * *
16408 TAAAAATTTTTTTAGAAGGATTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTGTTG
773 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
16473 GCATGTAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTT-TG------TG
838 GCATG-CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
*
16524 --AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * ** *
16587 CTCATTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAACAGCCTAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * ** * *
16652 ACTAGCACCCATCACACATCTTGTGCGCATAACCCCCCATCCCCCAATCGTCGGAACCTCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCCGCCCCCAATCGCCGGAACCCCAATGC
** * *
16717 CATCGGTCAGGTTCT-C--C-A------G-CGATGGTGGCCTGGGCG--AAAAAAATGC-AGCAC
195 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGA-CAC
* ** * * * * *
16768 CAGCGCATGCTTGAGCCCAGCATGTGCACTCGTAACCCTCGGTCCGGTCTGATCTTACACTGGGA
259 CAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGA
* * *
16833 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACAAAACGAGCG
324 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
16898 TGCGGGCGCTCAACCGGCCAGAGGGGCTGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCCTAC
389 TGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTAC
* * ** ** * * * *
16963 ATGCTGCCGATCTTGCTGCTTCAACCCTCGGTCCAGTCTGATCATACATTGGGAATGAACTCCGT
454 GTGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
17028 ATGCCGAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCATTACGCCGGCCAGAGAGGCGGGATG
519 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-CTGGCCAGAGAGGCGGGATG
17093 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGCCATGCCA
583 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
*
17157 ATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
648 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
* * * * *
17222 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCAGGATTTTTTTTAA
713 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * * *
17287 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTTGACATGATACTTGTATTTTTGGTGGCATG
778 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * *
17352 CACAAAACAATTCACCGAAAAACTCAAAGTGTACTGGATTTTGTGACCATTTG
843 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
17405 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
17470 CTCTTTAAGGGGGTGTGAGTTCTCCAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
17535 ACCAGAACCCATCGCACATCATG-G-GCACA----CAC-CCTCC--TTGCC---CCCCCAATGCG
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGCC
* * * * *
17588 GTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGGCG-AAAAGAAATACGACACCA
196 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACCA
* * * * *
17652 GCACATGCTCGAAAACCCAGCATGTGCACCCGTAACCCTCGGTCTGACCCGATCTTACATTGGGA
261 GCACATGCCCG--AGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGA
** * * * *
17717 ATGAACTCTATATGCTTAGATTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCG
324 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * *
17782 TGCGGGTGCACGGTCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCCCTG
389 TGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCCCTA
* * ** * * * * *
17847 CGTGTTGTCGATCCTGCTGTTATAACCC-TCGATCCGGTTTAATCTTAGACTAGGAATGAACTCC
453 CGTGCTGCCGATCCTGCTGCCACAACCCTTAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * * *
17911 GTATGCCTAAGCCAACCGATGAAACGAGCCGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGGGA
517 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACCT-GGCCAGAGAGGCGGGA
* *
17976 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGC
581 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
* *
18041 TAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCAT
646 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* * * * *
18106 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTCAGGATTTTTTAA
711 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-T
*
18171 AAAATTTTTT-AGACGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
775 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
18235 ATGCACAAAGAAATTCAGCTAAAAACTTGAAGTGTATAGGATTTTGTGACCATTTG
840 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* *
18291 AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
18356 CTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATTAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
18421 ACCAGCACCCATCGCACATCATGTGTGCACAACACCCCCCGCACCCCCAATTGCCAGAACCCCAA
131 ACCAGCACCCATCGCACATCATGTGCGCAC-AC-CCCCCCG--CCCCCAATCGCCGGAACCCCAA
* * * ** * * *
18486 TGCCGTCGATCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGGGTG-AAAAAAAATGTGGC
192 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGAC
* * * * * * * *
18550 ACCGGCAGATGCTCGAGCCTAGCATGTGCACCCACAACCC-CTGCTCTGGTTCGATCTTACACTG
257 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTC-GGTCTGATCCGATCTTACACTG
* *
18614 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAAGA
321 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* **
18679 GAGTGCGGGCGCTCAGCCGGCCAG-GGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCC
386 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCC
* * *** * * * ** *
18743 CTACGTGCTACCGATCCTACTGCCGTGACCC-TCGATTCGATCCAATCTTAGACTAGGAATGAAC
450 CTACGTGCTGCCGATCCTGCTGCCACAACCCTTAG-TCCGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
18807 TCCGTATGCCTAAGCCAACCGACGAAATGAGCCGACGGGCAGGCACAACGTCGGCCAGAGAGGCG
514 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACCT-GGCCAGAGAGGCG
* * * *
18872 GGATGCGCAGGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTG-CA
578 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
18936 GTGCCATTGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
643 -TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * * *
19001 TCACGGCAAGACGACTCGTTTTCTATTTTTCACGACTTTCGAAACTTTTTACGATTTGGGATTTT
707 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * * *
19066 TTTAAAATTCTTTT-AGAAGGGGTTTAGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTCT
772 TTTAAAATT-TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * ** *
19130 TGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGTAGTGTACAATATTTTGTGACCATTTC
836 TGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* *
19191 AAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * **
19256 CTCTTTAAGGGGGTATGAGTTCTCAAGGTTAAATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* ** *
19321 ACCAGCACCCATCGCACATCATGTGTGCACAACACCCCCCGCACCCCCAATTTCCAGAACCCCAA
131 ACCAGCACCCATCGCACATCATGTGCGCAC-AC-CCCCCCG--CCCCCAATCGCCGGAACCCCAA
* * * ** * * *
19386 TGCCGTCGATCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGGGTG--AAAAAAATGTGGC
192 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGAC
* * * * *
19449 ACCGGCACATGCCCGAGCCCAGCATGTGCAGCCGTAACCCTCGGTC-CAGTCCAATCTTACACTG
257 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA-TCCGATCTTACACTG
*
19513 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
321 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
19578 GCGTGCGGCCGCTCAGCCGGCCAGAGGGGCTGGATGCATAA-CTCGGGGATCGGCCGAGTCCACC
386 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC-CGGGGATCGGTCGGGTCCCCC
* * * * * ** * * *
19642 CTACAT-TTTCTCAATCCTACTGCTGCAACCC-TCGATCTGGTCGGATCTTAGACTGGGAATGAA
450 CTACGTGCTGC-CGATCCTGCTGCCACAACCCTTAG-TCCGGTCTGATCTTAGACTGGGAATGAA
* * * * * *
19705 CTTCGTATGCCTAAGCCAACCGACGAAACGAGCCGACGGGTGGGCACAACGTCGGCCAGAGAGGC
513 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACCT-GGCCAGAGAGGC
* * * *
19770 GAGATGCACAAGCCGTGGATCGATAGGGTGGTA-CTGGGTTTAGGCACATCTTCATATTTTTGCC
577 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
*
19834 ATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
642 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * * *
19899 TCACGGCAAGACGACTCGTTTTCTATTTTTCACGACTTTCGAAACTTTTTACGATTTGGGATTTT
707 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * * * * *
19964 TTTAAAATTTATTCAGAAGGATTTTTGGGCCCAAAATTGGTAGACATGATACTTGTATTTTT-TC
772 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-
20028 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
836 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
*
20088 AAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
20153 CTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
20217 ACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGCCCCCCAATCGCCGGAACCCCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCAATCGCCGGAACCCCAATGC
* * ** * * * * *
20281 TGTCGGTCAGGTTCTCCGGTGATGCTTCGGCAATGGTGCCCCGAGCGAAAAAAAAATGCGGCACC
195 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACC
*
20346 AGCACATGCCCGAGCCCAGTATGTGCACCCGCAA-CCT---TC--A----A---T---C------
260 AGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAA
* * ** *
20389 TG-A-TCCG-AT-CTTACATTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCGT
325 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** * * * * * * *
20450 ACGGGCGCTCAACCTGCCATAGTCGTAGGATGCGCAAGCTGAGGATCGGCCGAGTCCCCCCTACC
390 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACG
* * * * ** ** *
20515 TGCTACCGATCTTGCTGCCACAATCCTTGGTTTGGTCCAATCTTAGACTGGGAATGAAGTCCGTA
455 TGCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
20580 TGCCTAAGCCAACCAATGAAACGATCGGGTGGGCGGGCACTACACCGACCAGAGAGGCAGGATGC
520 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-CTGGCCAGAGAGGCGGGATGC
* * *
20645 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACCATTCCAA
584 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
* *
20710 TGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTCATGCC
649 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * *
20775 AAGACGACTCGCTTTT-TATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGAATTTTTTAAA
714 AAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAA
* * *
20839 ATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATG
778 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * * * *
20904 CATAAAAAAATTTAGCTACAAACTCGAAGTGTACAAGATTTTATGACCATTTC
843 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* * *
20957 AAAAAAGTGTTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * *
21022 CTGTTTAAGGGGGTGTGAGTTCTTGAGTTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
**
21087 ACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGTCCCCCAATCGTTGGAACCCCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCAATCGCCGGAACCCCAATGC
* * * * *
21150 CGCCGATCAGGTTCT----C--TG----G-CGATGGTGTCCCGGGTG-AAAAAAAATTCGGCACC
195 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACC
* * * ** * * * * * * *
21203 AGCATATGCCTGAGCCTAGGTTGTGCACTCGCAACCCTCGATC-CAGTCTGATCTTACCCTAGAA
260 AGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA-TCCGATCTTACACTGGGA
* *
21267 AAGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AACTGAGC
324 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GAGC
* * * * * *
21331 GTGCGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATTGTGTCCCTCTCT
388 GTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCC-CCCT
* * * *
21396 GCGTGCTGCCGATCCTGCTG-CAGCAACCCTCAAGT-CGATCTGATTTTAGACTGGGAATGAACT
452 ACGTGCTGCCGATCCTGCTGCCA-CAACCCT-TAGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * ** * * *
21459 CCGTATGCCTAAGCCAATCGATGGAACGAGCGGGCGGGCGGGCACTACGCCAGCCAAAAAGGTGG
515 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-CTGGCCAGAGAGGCGG
*
21524 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCAT
579 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
*
21589 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCATGTGAAGTTTC
644 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
*
21654 ATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
709 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
21719 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
774 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * *
21784 CATGCACAAAACAATTCAGCTAAAAAATCGAAGTGTACGGGATTTTGTGAGCATTTG
839 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
*
21841 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATG
1 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
21906 CTATTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
66 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * * *
21971 ACCAGCACCCATCGCCCATCATGTGCGCACACCCACCTGCCCCCAATCACTGGAACCCTAATGCC
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGCC
* *
22036 ACCGGTCAGGTTCTCCGACGATGCTCCGACGGTGGTGCCCCGGGC-AAAAAAAAATGCGACACCA
196 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACCA
* * * * *
22100 GCACATGCCCGAGCCCAGCATGTGCAGCTGCAACCTTCGGTC-CAGTCCAATCTTACACTGGGAA
261 GCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA-TCCGATCTTACACTGGGAA
22164 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
325 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * *
22229 ACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCATAA-CTCGTGGATCGGTCGGGT-ACCCCTAC
390 GCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC-CGGGGATCGGTCGGGTCCCCCCTAC
* * * ** ** * *
22292 GTTCTGTCGATCCTACTGCTGCAACCCTT-GATCTAGTCGGATCTTAGACTGGGAATGAACTCTG
454 GTGCTGCCGATCCTGCTGCCACAACCCTTAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCG
*
22356 TATGCCTAAGCCAACCGATGAAACGAGCGG
518 TATGCCTAAGCCAACCGACGAAACGAGCGG
22386 TCTGATCCAA
Statistics
Matches: 10642, Mismatches: 1187, Indels: 529
0.86 0.10 0.04
Matches are distributed among these distances:
853 6 0.00
854 203 0.02
855 131 0.01
856 41 0.00
857 162 0.02
858 53 0.00
859 29 0.00
860 41 0.00
861 7 0.00
862 16 0.00
863 2 0.00
864 13 0.00
865 47 0.00
866 14 0.00
867 9 0.00
868 254 0.02
869 376 0.04
870 110 0.01
871 2 0.00
872 5 0.00
873 38 0.00
874 195 0.02
875 6 0.00
876 167 0.02
877 175 0.02
878 13 0.00
879 3 0.00
880 7 0.00
881 26 0.00
882 28 0.00
883 232 0.02
884 688 0.06
885 311 0.03
886 407 0.04
887 24 0.00
888 46 0.00
889 69 0.01
890 33 0.00
891 165 0.02
892 775 0.07
893 563 0.05
894 496 0.05
895 612 0.06
896 462 0.04
897 472 0.04
898 862 0.08
899 885 0.08
900 428 0.04
901 11 0.00
902 107 0.01
903 1 0.00
904 18 0.00
905 336 0.03
906 254 0.02
907 188 0.02
908 18 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCAATCGCCGGAACCCCAATGCC
GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGACACCA
GCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACGT
GCTGCCGATCCTGCTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACCTGGCCAGAGAGGCGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATT
TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
Found at i:15973 original size:26 final size:26
Alignment explanation
Indices: 15944--15996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15934 CCGATCCGAT
*
15944 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGCATG
* *
15970 CTTAGACTGGGAATGAACTCCGCATG
1 CTTACACTAGGAATGAACTCCGCATG
15996 C
1 C
15997 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGCATG
Found at i:16857 original size:26 final size:26
Alignment explanation
Indices: 16821--16872 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16811 CCGGTCTGAT
16821 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
16847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
16873 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:17744 original size:26 final size:26
Alignment explanation
Indices: 17705--17757 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17695 CTGACCCGAT
*
17705 CTTACATTGGGAATGAACTCTATATG
1 CTTACATTGAGAATGAACTCTATATG
* *
17731 CTTAGATTGAGAATGAACTCTGTATG
1 CTTACATTGAGAATGAACTCTATATG
17757 C
1 C
17758 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (26 bp):
CTTACATTGAGAATGAACTCTATATG
Found at i:18641 original size:26 final size:26
Alignment explanation
Indices: 18605--18657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18595 CTGGTTCGAT
18605 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
18631 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18657 C
1 C
18658 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19540 original size:26 final size:26
Alignment explanation
Indices: 19504--19556 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19494 CCAGTCCAAT
19504 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
19530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19556 C
1 C
19557 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22187 original size:26 final size:26
Alignment explanation
Indices: 22151--22203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22141 CCAGTCCAAT
22151 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
22177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
22203 C
1 C
22204 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22426 original size:26 final size:26
Alignment explanation
Indices: 22397--22449 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22387 CTGATCCAAT
*
22397 CTTACATTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
22423 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
22449 C
1 C
22450 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:29953 original size:26 final size:26
Alignment explanation
Indices: 29924--29976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29914 TTGGTCCGAT
29924 CTTACACTAGCAATGAACTCCGTATG
1 CTTACACTAGCAATGAACTCCGTATG
* * *
29950 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGCAATGAACTCCGTATG
29976 C
1 C
29977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGCAATGAACTCCGTATG
Found at i:30861 original size:26 final size:26
Alignment explanation
Indices: 30825--30877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
30815 CTGGTCCAAT
30825 CTTACACTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
* *
30851 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
30877 C
1 C
30878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGTATG
Found at i:32062 original size:897 final size:896
Alignment explanation
Indices: 29212--32482 Score: 4387
Period size: 901 Copynumber: 3.6 Consensus size: 896
29202 ATCCAATTTG
* *
29212 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-TGGACGGGCGGGC
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGC
* *
29276 ACTACGCCGACCAGAGAGACGGGA-GATGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
65 ACTACGCCGGCCAGAGAGACGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * ** **
29340 GTACATCTTCACATTTTTGCTGTGAAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
129 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
29405 CTTAAGCCTTTATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAA
194 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * **
29470 CTTTTTATGGTTCGGGATTTTTTAAAAAATTTTTCAGAAGGAATTTTTACCCCAAACTTGGTAGA
259 CTTTTTACGGTTCAGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
29535 -AGTGATCCTTGTATTTTTGTTGGCATGCATAAAAATATTTAGCTAAAAA-CTTGAAGTGTACAG
324 CA-TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGCTAAAAACCTCGAAGTGTACAG
* *
29598 GATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
29663 CTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
453 CTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGC
* * * *
29728 CAATAGAAGGGCGAAGTACCACCACCCATCGCACATCATGTGCACACA-CCCCCCGCCCCCCAAT
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAAT
* * * * **
29792 CGCCGGAA-CCCAGTGCCGCTGGTCAGGTTCTCCAATGATGCTCTGGCGATGGTGCCTCGGGTGA
583 CGCCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGGGCAA
* * * * *
29856 AAACAAATGTGGCACCAGCACATGCCTGAGCCCATCATGTGCACTCGTAACCCTCGGTTTGGTCC
647 AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGTAACCCTCGGTCTGGTCC
*
29921 GATCTTACACTAGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
712 GATCTTACACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * ** *
29986 CCTACGAAACGAGCATACGGGCGCTCATTCGACCAGAAGGGCAGGATGCGTAAGTTGAGGG-TC-
777 CCCACGAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTG-GGGATCG
* * * *
30049 GACTGGGTCCCCCCTGCATGCTG-TCGATCCTGCTACCACAACCCTTGGTCTAGT-TCA
841 GAC-GGGTCCCCCCTACATGCTGCT-GATCCTGCTACCATAACCCTCGGTCTGGTCT-A
* * * *
30106 ATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAAGCAGGCGGGTGGGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
* * * ** *
30171 CTACGCCGGCTAAAGAGGCGGGATAAGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
30236 ACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * **
30301 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGAGTCGTTTTTTATTTTTCATGATTTTCAAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * * *
30366 TTTTACGATTCGGGATTTTTTAAAAAACTTTTTT--GAAGAAGTTTTGGCCCCAAACATGGTAAA
261 TTTTACGGTTCAGGATTTTTT-AAAAA-TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
30429 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAA-CTCGAAGTGTACAGG
324 CATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGCTAAAAACCTCGAAGTGTACAGG
* * * *
30493 ATTTTGTGACCATATGAAAAAAGTGTCCCCATTTTAGACACATTAATGGCTACTGGCAACAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* ** * *
30558 TACAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGAGCC
454 TGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCC
* * *
30623 AATATAAGGGGCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCCCGCCGCCCCCA
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCC-CCGCCCCC-
* * * * *
30688 CAATCGTCGGAACCCCAATGTCAC-CGATCAGGTTCACCGATGATACTCCGGCGATGGTG-CCCA
579 CAATCGCCGGAACCCCAATG-C-CGCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCG
* * * * * *
30751 GGCAAAAAAAAAATGCAGAACCAGCACATGCCCGAGCCTAGCATGTGCACTCATAACCCTTGATC
642 GGC-AAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGTAACCCTCGGTC
* * *
30816 TGGTCCAATCTTACACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
706 TGGTCCGATCTTACACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * ** *
30881 AGTCAACCCATGAAATAAGCATACGGGCGCTCAGCCAGCTGGAGGGGCAGGATGCACAAGCCGGG
771 AGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGG
* * * * * * * * *
30946 GATCGGTCGGGTTCCCCCTACGTGCTGCCGATCCTACTACCATGACCTTCAGTCTGATCTA
836 GATCGGACGGGTCCCCCCTACATGCTGCTGATCCTGCTACCATAACCCTCGGTCTGGTCTA
* * *
31007 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAAGAAACGAGCTGGCGGGCGGCCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
* * *
31072 CTATGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
**
31137 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGAACCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
31202 TAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
31267 TTTTACAGTTCAAGATTTTCTT-AAAATTTTTTCAAAAGGAGTTTTGGTCCCAAACTTGGTAGAC
261 TTTTACGGTTCAGGATTTT-TTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
31331 GTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTTAGCTAAAAA-TTCGAAGTGTATAGG
325 ATGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAAATTTAGCTAAAAACCTCGAAGTGTACAGG
* *
31395 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTCAGACACTTTAATGGCTACTGGTAGCAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
31460 TGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTAAGGTTTGATGGGGGATAGGGGGCC
454 TGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCC
* *
31524 AATATAAGGGCCAAAG-ACCAACACCCATCACACATCATGTGCGCACACCCCCCTCGCCCCCCAA
519 AATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGCCCCCCAA
* * * * *
31588 TCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGGTGGTGCCCCGGGCA
582 TCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGGGCA
* *
31653 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC-CTGTAACCCCCGGTCCGGT
646 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTC-GTAACCCTCGGTCTGGT
* * * * *
31717 CCGATCTTACACTGGCAATGAACTCCATATGTTTAGACTGGGAATGAACTTCGTATGCCTAAATG
710 CCGATCTTACACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
31782 AACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGTGGGGCAGGATGCACAAGCTGGGGATC
775 AACCCACGAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATC
* * *
31847 GGACGAGTCCCCCCTACATGCTGCTGATCCTGCTGCCATAACCCTCGGTCTGGTCTG
840 GGACGGGTCCCCCCTACATGCTGCTGATCCTGCTACCATAACCCTCGGTCTGGTCTA
*
31904 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
*
31969 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
32034 ACACCTTCATATTTCTACCATCCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
32099 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTTTT-ATGATTTTTGAAAC
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGATTTTTGAAAC
* * ** * *
32163 TTTTTACGGTTCAGGATTTTTTTAAAA-TCTTTCAAGACAGGAGTTTCAGACCCAAACCTGGT-G
260 TTTTTACGGTTCAGGATTTTTTAAAAATTTTTTCAA-A-AGGAGTTTTGGCCCCAAACTTGGTAG
*
32226 ACATGATCCTTGTAATTTTT-TTCGCATGCCACAAAAAAAA-TTAGCTAAAAACCTCGAAGTGTA
323 ACATGATCCTTGT-ATTTTTGTTGGCATG-CA-AAAAAAAATTTAGCTAAAAACCTCGAAGTGT-
* *
32289 ACAAGATTTTGTTGACCATTTGAAAAAAGTTTCCCCCATTTCAGACACTTTAATGGCTACTGGCA
384 ACAGGATTTTG-TGACCATTTGAAAAAAGTGT-CCCCATTTCAGACACTTTAATGGCTACTGGCA
*
32354 GCAAACCTGGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCTCAAAGGTTTGATGAGGG
447 GCAAACCT-GCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CT-TAAGGTTTGATGAGGG
32419 ATAGGGGGCCAATATAAGCGGCCAAGTACCAGCACCCATCGCACATGCATGTGCGCACACCCCC
509 ATAGGGGGCCAATATAAG-GGCCAAGTACCAGCACCCATCGCACAT-CATGTGCGCACACCCCC
32483 GCCCCCTAAC
Statistics
Matches: 2077, Mismatches: 253, Indels: 81
0.86 0.10 0.03
Matches are distributed among these distances:
894 487 0.23
895 9 0.00
896 16 0.01
897 551 0.27
898 71 0.03
899 23 0.01
900 41 0.02
901 647 0.31
902 144 0.07
903 13 0.01
904 2 0.00
905 35 0.02
906 21 0.01
907 17 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (896 bp):
ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTCAGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACA
TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGCTAAAAACCTCGAAGTGTACAGGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
CAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGC
CGGAACCCCAATGCCGCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGGGCAAAAAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGTAACCCTCGGTCTGGTCCGATC
TTACACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGGACGG
GTCCCCCCTACATGCTGCTGATCCTGCTACCATAACCCTCGGTCTGGTCTA
Found at i:33827 original size:26 final size:26
Alignment explanation
Indices: 33788--33840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33778 CTGGTCTGAT
*
33788 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
*
33814 CTTAGACTGAGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
33840 C
1 C
33841 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:34724 original size:26 final size:26
Alignment explanation
Indices: 34688--34740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34678 CCAGTTTGAT
*
34688 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACCCCGTATG
*
34714 CTTAGACTGGGAATGAACCCCGTATG
1 CTTACACTGGGAATGAACCCCGTATG
34740 C
1 C
34741 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACCCCGTATG
Found at i:34836 original size:899 final size:898
Alignment explanation
Indices: 32831--34843 Score: 2615
Period size: 899 Copynumber: 2.2 Consensus size: 898
32821 GCCATCATCT
*
32831 CATGCCTGAGCCCAGCAATGTGCACCCGTAACCCTCGTCCAGTCTGATCCTTACCCTGGGAAATG
1 CATGCCTGAGCCCAGC-ATGTGCACCCGTAACCCTCGTCCAGTCTGAT-CTTACACTGGG-AATG
* ** * *
32896 AACTCCATACTGCTTAGACTTGCCAATGAACTTCGTACTGCCTAAGTCAAACC-CAAACTGAAGC
63 AACTCCGTA-TGCTTAGAC-TGAGAATGAACTCCGTA-TGCCTAAGTCAACCCACAAAC-G-AGC
* * * * * *
32960 ATCACGGGCGCTTAGCTGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCC
123 GT-GCGGGCGCTCAGC-GGCCAGAGGGGTAGGATGCACAAGCCGGGGATCG-GCGGGTCCCCCCT
* * * ** * *
33025 TGCATGCTGTCGATCCTGCTGCTGTAACCCTCAATCCGGTATGATTATAGATTGGGAATGAACTC
185 TGCGTGCTGCCAATCCTGCTGCTACAAACCTCAATCCGGTATAATTATAGATTGGGAATGAACTC
* *
33090 CTATACCTAAGCCAATCGACGAAACGAGCGGGCGGACGGGCAACTAAACGCCGACTAAAGAGGCG
250 CTATACCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCAACT-AACGCCGACTAAAGAGGCG
* *
33155 GGATGCGCAAGCCGGTGGATCAATAGGGTGGTAGGGTGGGTTTTAGGCACATCTTCTATTTCTAC
314 GGATGCGCAAGCCGATGGACCAATAGGGTGGTAGGGTGGGTTTTAGGCACATCTTCTATTTCTAC
* * **
33220 CATGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAGTGGTCCCTTACAGCCTTCATGTGAAG
379 CATGCCAATACCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTACAGCCTTCATGTGAAG
* * *
33285 TTTCATGGCAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTACGGTTTGGGATTT
444 TTTCATGGCAGACGACTCGTTTTCTATTTTCCACGATTTTAGAAACTTTTTACGGTTTAGGATAT
* *
33350 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCATAGTTGGTAGACATGATCCTTGTATTTTTGT
509 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
* *
33415 TGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
574 TGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
** *
33480 AGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTCAAATGATCTT
639 AGCATCCCCATTTCAAACACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTCAAATGATCTT
* * *
33545 TTAGGAGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGTGGGCCAACATAAGAGCCAAATGCCAG
704 TAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGAGCCAAATGCCAG
* * * *
33610 CACCCATCACACATCATGGGCGCACACCCCCCCCGCCCCCTCAATCGCTGGAACCTCAATGTCGC
769 CAACCATCACACATCATGGGCGCACACCCCCCACGCCCCCTCAATCGCTGGAACCCCAATGCCGC
* * * *
33675 CGGACAGGTTCTCCGACGATGCTCTGATGATAGTGCCCCGAGCTAAAAAAAATACGACACCAGCA
834 CGGACAGGTTCTCCGACGATGCTCCGACGATAGTGCCCCGAGCAAAAAAAAATACAACACCAGCA
** * **
33740 CATG-CTCGAGCCCAGCATGTGCACCCACAACCTTCAGTCTGGTCTGATCTTACACTGGGAATGA
1 CATGCCT-GAGCCCAGCATGTGCACCCGTAACCCTC-GTCCAGTCTGATCTTACACTGGGAATGA
*
33804 ACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCA
64 ACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAACGAGCGTGCG
* * * * **
33869 GACACTCAGCCCGGCCAGAGGGGTA-GATG-ACCAAGCCGGAGATCAGCTGGGTCCCCCCTTATG
128 GGCGCTCAG--CGGCCAGAGGGGTAGGATGCA-CAAGCCGGGGATCGGC-GGGTCCCCCCTTGCG
*** * *
33932 TGCTGCCAATCCTGCTG-TCACAAACCTTGGTCCGGTCTAATCTTATA-CTT-GGAATGAACTCC
189 TGCTGCCAATCCTGCTGCT-ACAAACCTCAATCCGGTATAA--TTATAGATTGGGAATGAACTCC
* * * * * * *
33994 GTATGCCTAAGCCAACCGACGAAACGAGCGGATGGGCGGGC-ACT-ACGTCG-GTCAGAGAGGTG
251 -TATACCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCAACTAACGCCGACT-AAAGAGGCG
* *
34056 GGATGCGCAAGCC-ATGGACCGATAGGGTGGTA-GGTGGG-TTTAGGCACATCTTCCTATTTCTG
314 GGATGCGCAAGCCGATGGACCAATAGGGTGGTAGGGTGGGTTTTAGGCACATCTT-CTATTTCTA
34118 CCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTA-AGCCTTCATGTGAA
378 CCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTACAGCCTTCATGTGAA
* * *
34182 GTTTCATGGCAAGACGACTCGTTTTTTATTTTCCATGATTTTTGAAACTTTTTACGGTTTAGGAT
443 GTTTCATGGC-AGACGACTCGTTTTCTATTTTCCACGATTTTAGAAACTTTTTACGGTTTAGGAT
* * **
34247 ATTTTTAGAATTTTTTCAGAAGGA-TTTTTGCCTCCAAACTTGGTAGATGTGATCCTTGTATTTT
507 ATTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC-CCAAACTTGGTAGACATGATCCTTGTATTTT
34311 TGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
571 TGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
* * *
34376 AAAAGCATCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
636 AAAAGCATCCCCATTTCAAACACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTCAAATGAT
* * * *
34441 CTTTAAGGGGGTGTGAGTTCTCAAGGTTTGTTGAGGGATAGGGGGCCAATATAATG-GCCAAGTG
701 CTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAA-GAGCCAAATG
* * *
34505 CCAGTAACCATCACACATCATGTGTGCACACCCTCCCTAC-CCCCCT-AATCG-TCGGAACCCCA
765 CCAGCAACCATCACACATCATGGGCGCACACCC-CCC-ACGCCCCCTCAATCGCT-GGAACCCCA
* ** * * *
34567 ATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCAA
827 ATGCCGCCGGACAGGTTCTCCGACGATGCTCCGACGATAGTGCCCCGAGC-AAAAAAAAATACAA
34632 CACCAGCA
891 CACCAGCA
*
34640 CATGCCTGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCAGTTTGATCTTACACTGGGAATGAA
1 CATGCCTGAGCCCAGCATGTGCACCCGTAACCCTC-GTCCAGTCTGATCTTACACTGGGAATGAA
* *
34705 CTCCGTATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
65 CTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAACGAGCGTGCGG
* * ** * *
34770 GTGCTCAGTCGGCCAGAGGGATAGGATGCACAAGCCGGGGATCGGCCAGTTCCCTCTTGCGTGCT
129 GCGCTCAG-CGGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGCGGGTCCCCCCTTGCGTGCT
*
34835 GCCTATCCT
193 GCCAATCCT
34844 ACTACCTCAA
Statistics
Matches: 958, Mismatches: 122, Indels: 58
0.84 0.11 0.05
Matches are distributed among these distances:
898 46 0.05
899 453 0.47
900 185 0.19
901 29 0.03
902 2 0.00
903 77 0.08
904 68 0.07
905 22 0.02
906 13 0.01
907 12 0.01
908 28 0.03
909 23 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (898 bp):
CATGCCTGAGCCCAGCATGTGCACCCGTAACCCTCGTCCAGTCTGATCTTACACTGGGAATGAAC
TCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAACGAGCGTGCGGGC
GCTCAGCGGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGCGGGTCCCCCCTTGCGTGCTGCC
AATCCTGCTGCTACAAACCTCAATCCGGTATAATTATAGATTGGGAATGAACTCCTATACCTAAG
CCAACCGACGAAACGAGCGGACGGACGGGCAACTAACGCCGACTAAAGAGGCGGGATGCGCAAGC
CGATGGACCAATAGGGTGGTAGGGTGGGTTTTAGGCACATCTTCTATTTCTACCATGCCAATACC
ATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTACAGCCTTCATGTGAAGTTTCATGGCAGA
CGACTCGTTTTCTATTTTCCACGATTTTAGAAACTTTTTACGGTTTAGGATATTTTTAAAATTTT
TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGCATCCCCATT
TCAAACACTTTAATAGCTACTGGCAACAAACCTGTAAAATCTCAAATGATCTTTAAGGAGGTGTG
AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGAGCCAAATGCCAGCAACCATCACAC
ATCATGGGCGCACACCCCCCACGCCCCCTCAATCGCTGGAACCCCAATGCCGCCGGACAGGTTCT
CCGACGATGCTCCGACGATAGTGCCCCGAGCAAAAAAAAATACAACACCAGCA
Found at i:37150 original size:886 final size:881
Alignment explanation
Indices: 34970--37472 Score: 3380
Period size: 878 Copynumber: 2.8 Consensus size: 881
34960 CAATGCAAAT
* *
34970 TTACACTGGGAATGAACTACATATGCTTAGACTGGGAATGAACTCCGTATTGCCTAAGTCAACCC
1 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA-TGCCTAAGTCAACCC
* * * * * **
35035 ACAAACCGAGCGTACGGGCGCTCAGCCAGCCAGAAGGGCAGGATGCTCAAGCC-GAGGATCGGCT
65 A-AAAACGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAG-GGATCATC-
* * * * * *
35099 GGGTCCCCCCCTGCGTGCTGTCGATCTTGCTGCTGTAACCCCCGGTCTAGTCTGATCTTAGACTA
127 GGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCAGTCCAGTCTGATCTTAGACTG
* * * * *
35164 GGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGAGCGGGTGGGCAGGCACTATG-CAGGC
192 GGAATGAACTTCATATGTCTAAGCCAACCGATGAAACGAGCGGG-CGGC--GCACTACGCCA-GC
* *
35228 CA-AAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCA
253 CAGAA-AGGCAGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
35292 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
317 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * ** *
35357 ATGTGAAGTTTCATAGCAAGACGACTCCTTTTCTATTCTTCATGATTTTTGAAACTTTTTACGGT
382 ATGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGTT
*** * * * * *
35422 TCAAAATTTTTTTAAATTTTTTTTAGAAGGAGTTATGGCCCAAAACTTGGTGGACGTGATCCTTG
447 TGGGAATTTTTTTAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
*
35487 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT-TGACCT
511 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* *
35551 TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCA
576 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-CAACCTGTAAAATCTCA
* * *
35616 AATGCTCCTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCC
640 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* **
35681 AAGTACCAGCACCCATCGCACATCATGTGTGCACACCGCCCCCCCCGCCGCCCCCCCGAATCGTT
705 AAGTACCAGCACCCATCGCACATCATGTGTGCACA------CCCCCGCCGCACCCCCGAATCGCC
* * *
35746 GGAACACCAATGCCACCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGGTGAAAAA
764 GGAACACCAATGCCACCAGTCAGGTTCTCCAACGATGCTCCGACGAGGGTGCCCCGGGTGAAAAA
*
35811 AATTATGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCACAACCCTCGG
829 AATTACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCACAACCCTCGG
*
35864 -T---C------TG-A-TCCG-AT-CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* *
35915 CAAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCAGGGATCGATCGG
66 -AAAACGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATC-ATCGG
* ** * *
35980 GT-CCCCCCTGCGTTCTACCGATCCTGCAACCGTAACCCTCAGTCCAGTCTGATCTTAGACTGGG
129 GTCCCCCCCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCAGTCCAGTCTGATCTTAGACTGGG
* * *
36044 AATGAACTTCGTATGTCTAAGCCAACCAATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
194 AATGAACTTCATATGTCTAAGCCAACCGATGAAACGAGCGGGC-GGC--GCACTACGCCAGCCAG
* * * *
36109 AGAGGC-GTGATGCGCAAGCCT-TGGATCCATAGGTTGGTAGGTGGGCTTAGGCACATCTTCATA
256 AAAGGCAG-GATGCGCAAG-CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
36172 TTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCAT
319 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
** * * *
36237 GTGAAGTTTCATTTCAAGACAACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACGATTT
384 GTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACG-TTT
* * * *
36302 GGGATTTTTTTTAAATTTTTTCATATGGAGTTTTGGCCCCAAACTTGTTAGACATGATCCTTGTA
448 GGGAATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
* * *
36367 TTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTC-AAGTGTTCTA-GTTTTTGTGACCAT
513 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-AGGATTTTGTGACCAT
* *
36429 TTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAACTTG-AAAATCTC-AA
577 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCTGTAAAATCTCAAA
*
36492 TGCTCTTTAAGGGGGTGTGAGTTCTTGAGG-TTGAGGAGGGATAGGGGGCCAATATAAGGGCCAA
642 TGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
36556 CTACCAGCACCCATCGCACATCATGTGTGCACA-CCCC-TCGCACCCCC-AATTGCCGGAACCCC
707 GTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGCCGCACCCCCGAATCGCCGGAACACC
** * * *
36618 AATGCTGCCAGTCAGGTTTTCCAACGATGCTCCGATGAGGGTGCCCCGGGTGAAAAACAA-TGCG
772 AATGCCACCAGTCAGGTTCTCCAACGATGCTCCGACGAGGGTGCCCCGGGTGAAAAA-AATTACG
*
36682 GCACTAGCACATGCTCGAGCCCAGCATGTGCACCCACAACCCTCAGTCCAATCTG
836 GCACCAGCACATGCTCGAGCCCAGCATGTGCACCCACAACCCTC-G--------G
*
36737 ATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ---TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
36802 CCATGAAACGAGTGTAC-AGCGCTCAGCCGGCCAGAGGGGCAGGATGGGCAAGCCAGGGATCAAT
63 CCA-AAAACGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATC-AT
* *
36866 CGGGTCCCCCCCTGCATGCTGTCGATCCTGCTACTGTAACCCTCAATCCAGTCTGATCTTAGACT
126 CGGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCAGTCCAGTCTGATCTTAGACT
*
36931 GGGAATGAAATTCATATGTCTAAGCCAACCGATGAAACGAGCGGGCGGC-CACTACGCCAGCCAG
191 GGGAATGAACTTCATATGTCTAAGCCAACCGATGAAACGAGCGGGCGGCGCACTACGCCAGCCAG
*
36995 AAAGGCAGGATGCGCATGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
256 AAAGGCAGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
37060 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
321 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * *
37125 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTATGGTTTGG
386 GAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTA-CGTTTGG
* * * *
37190 GAATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTACACATGGTCCTTGTATT
450 GAATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
**
37255 TTTTTTGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
515 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG
* * *
37320 AAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
580 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATG
*
37385 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGT
644 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
37450 ACCAGCACCCATCACACATCATG
709 ACCAGCACCCATCGCACATCATG
37473 CTGCTGTAAC
Statistics
Matches: 1414, Mismatches: 147, Indels: 98
0.85 0.09 0.06
Matches are distributed among these distances:
864 106 0.07
865 11 0.01
866 4 0.00
873 65 0.05
874 30 0.02
875 8 0.01
876 17 0.01
877 75 0.05
878 327 0.23
879 86 0.06
880 26 0.02
881 2 0.00
882 2 0.00
883 1 0.00
884 2 0.00
885 2 0.00
886 258 0.18
887 26 0.02
888 67 0.05
889 58 0.04
890 153 0.11
891 32 0.02
892 55 0.04
893 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (881 bp):
TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
AAAACGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCATCGGGT
CCCCCCCTGCGTGCTGTCGATCCTGCTACTGTAACCCTCAGTCCAGTCTGATCTTAGACTGGGAA
TGAACTTCATATGTCTAAGCCAACCGATGAAACGAGCGGGCGGCGCACTACGCCAGCCAGAAAGG
CAGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
TTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGTTTGGGAATTT
TTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGTGCACACCCCCGCCGCACCCCCGAATCGCCGGAACACCAATGCCACC
AGTCAGGTTCTCCAACGATGCTCCGACGAGGGTGCCCCGGGTGAAAAAAATTACGGCACCAGCAC
ATGCTCGAGCCCAGCATGTGCACCCACAACCCTCGG
Found at i:38231 original size:26 final size:26
Alignment explanation
Indices: 38202--38254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
38192 CTGGTCCCAT
38202 CTTACACTGGGAATGAACTACGTATG
1 CTTACACTGGGAATGAACTACGTATG
* *
38228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTACGTATG
38254 C
1 C
38255 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTACGTATG
Found at i:39135 original size:26 final size:26
Alignment explanation
Indices: 39099--39151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
39089 CTGGTCCCAT
39099 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
39125 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
39151 C
1 C
39152 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:39771 original size:12 final size:13
Alignment explanation
Indices: 39754--39785 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
39744 TGAGGGATAG
39754 GGGGCCAATAT-A
1 GGGGCCAATATCA
39766 GGGGCCAATATCA
1 GGGGCCAATATCA
39779 -GGGCCAA
1 GGGGCCAA
39786 GTACCAGCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 18 0.95
13 1 0.05
ACGTcount: A:0.31, C:0.22, G:0.34, T:0.12
Consensus pattern (13 bp):
GGGGCCAATATCA
Found at i:41101 original size:900 final size:895
Alignment explanation
Indices: 39193--41599 Score: 3207
Period size: 900 Copynumber: 2.7 Consensus size: 895
39183 GCTCAACCGG
* * * * * * *
39193 CCCCTCTACATGCTACCAATCCTGCTGCCACAACCCTTGATCCT-TTTTGATCTTAGACTCGGAA
1 CCCCTCTGCATGATACCCATCCTGCTGCCACAACCCTCGAT-CTGATCTGATCTTAGACTGGGAA
* * * *
39257 TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGCACTACGCCGACCATAG
65 TGAACTCCGTATGCCTAAGCCAACCGAAGAAATGAGCGGGCGGGCGGGCACTACGCCGACCAGAG
* * *
39322 AGGCTGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCCTCATA-TTC
130 AGGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* **
39386 TTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTTGCTTAAGCCTTCATGTG
195 -TGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
* * * * * * *
39451 AAGTATCATGGCAAGAAGACTCATTTTTTATTTTTCACAATTTTT-AAAACTTTTCATGGTTCGA
259 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTT-ACGGTTCGA
* *
39515 GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACTCCAAACTTGGTAGACATGATCCTTGTATT
323 GA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-T
* *
39580 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
386 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTT
* *
39645 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAAT
451 GAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
39710 GCTCTTT-AAGGGGATGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAA
516 GCTCTTTAAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-A-AT--------A
* * *
39774 TATCAGGGCCAAGTACCAGCTCCCATCGCACATCATGTGCTCACACCCCCCGACCCCCAATCGCC
570 TA--AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAAACCCCCCGACCCCCAATCGCC
* * * ** *
39839 GGAACCCTCAATTCCACCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGGCCCAGGCAAAAA
633 GAAACCCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTGGCCCAGGCAAAAA
* * * * ** *
39904 AAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCTACAACCCTCAATTTGATATGATC
698 AAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCAATCCGATACGATC
* * ***
39969 TTACATTGGGAATGAAATTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCA
763 TTACACTAGGAATGAAATTCGTATGCTTAGACTCAAAATGAACTCCATATGCCTAAGTCAACCCA
*
40034 CGAAACGAGCGTGCGACCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGG
828 CGAAACGAGCGTGAGACCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGG
40099 GTC
893 GTC
* * * * * * * *
40102 CCCCTCTGCATGCTACCCATCCTGGTACTATAACCCTCGGTCCGATCTGATCTTAAACTGGGAAT
1 CCCCTCTGCATGATACCCATCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAAT
* * * * *
40167 GAACTCTGTATGCTTAAGCCAACCGAAAAAATGAGCGGGCGGGTGGGCACTACTCCGACCAGAGA
66 GAACTCCGTATGCCTAAGCCAACCGAAGAAATGAGCGGGCGGGCGGGCACTACGCCGACCAGAGA
* * * *
40232 GACGGGATGCGCAAACCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCT
131 GGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
40297 ACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAA
196 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * * *
40362 GTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGATTCCAGAT
261 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGAT
* * *
40427 TTTATTAAAATTTTTTCGGAAGCAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTT
326 TTT-TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* * * * *
40492 GTTGGCATGCATAAAAACATTCAGCTAAAATCTCGAAGTGTACTGGATTTTGTGACCATTTGAAA
390 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAA
* *
40557 AAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
455 AAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
40622 TTTAAAGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
520 TTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
40687 AGCACCCA-CTGCACATCATGTCCGCACAAACCCCCCTGCCCCCCCAA-CGTCGAAACCCCCAAT
585 AGCACCCATC-GCACATCATGT--GCACAAACCCCCC-G-ACCCCCAATCGCCGAAACCCCCAAT
** * * * *
40750 GCTGCCGGTTAGGTTCTCCGACGATGGTCTAACGATGGTGTG-TCAGGCAAAAAAAAATACGACA
645 GCCACCGGTCAGGTTCTCCGACGATGCTCCAACGATGGTG-GCCCAGGC-AAAAAAAATACGACA
* ** * * *
40814 CCAGCACATGCCTGAGCCCAGCATGTGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTAGG
708 CCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCAATCCGATACGATCTTACACTAGG
* ** * * * *
40879 AATGAACTTCGTATGCTTAGACTCAAAATGAACTCTGTATTCCTAAGTTAACCCATGAAACGAGT
773 AATGAAATTCGTATGCTTAGACTCAAAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGC
**** * * *
40944 GTGAGGGTGCTCAGCCGGCCAGAGGTGG-AGGATGCGCAAGCCGGGGATTGGTCGGGTC
838 GTGAGACCACTCAGCCGACCAGAGG-GGCAGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * * *
41002 CCCTTCTGCATGATATCGATTCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAAT
1 CCCCTCTGCATGATACCCATCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAAT
* * * *
41067 GAACTCCATATGCCTCAGCCAACCGACGAAATGAGCGGACGGGCGGGCACTACGCCGACCAGAGA
66 GAACTCCGTATGCCTAAGCCAACCGAAGAAATGAGCGGGCGGGCGGGCACTACGCCGACCAGAGA
* *
41132 GGCAGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
131 GGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
41197 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
196 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * *
41262 GTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
261 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGAT
* * *
41327 TTTTTAAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAAATTGGTAGACATGATGCTAGTATTTTT
326 TTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* *
41391 GTTGGCATGCACAAAAAAATTCACCTAAAAAATCAAAGTGTACAGGATTTTGTGACCATTTGAAA
390 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAA
* * * * *
41456 AAAGTGT-CCCATTTAAGATACTTTAGTGGCTATTGACAACAAACCTGTAAAATCTCAAATGCTC
455 AAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
41520 TTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGG-CAAGTACC
520 TTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
41584 AGCACCCATCGCACAT
585 AGCACCCATCGCACAT
41600 TCTCGTAACG
Statistics
Matches: 1312, Mismatches: 171, Indels: 42
0.86 0.11 0.03
Matches are distributed among these distances:
895 1 0.00
896 31 0.02
897 22 0.02
898 118 0.09
899 146 0.11
900 488 0.37
901 2 0.00
906 2 0.00
907 1 0.00
908 167 0.13
909 323 0.25
910 11 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (895 bp):
CCCCTCTGCATGATACCCATCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGAAGAAATGAGCGGGCGGGCGGGCACTACGCCGACCAGAGA
GGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGAT
TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCACAAACCCCCCGACCCCCAATCGCCGAAACCCCCAATGCCACC
GGTCAGGTTCTCCGACGATGCTCCAACGATGGTGGCCCAGGCAAAAAAAATACGACACCAGCACA
TGCCCGAGCCCAGCATGTGCACCCACAACCCTCAATCCGATACGATCTTACACTAGGAATGAAAT
TCGTATGCTTAGACTCAAAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGAGACC
ACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTC
Found at i:42570 original size:16 final size:16
Alignment explanation
Indices: 42544--42609 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
42534 TCACACTTGT
42544 CTTTAGGATTTTTAGGA
1 CTTT-GGATTTTTAGGA
* *
42561 CTTTGGATTTTAAGAGG
1 CTTTGGATTTTTAG-GA
* * *
42578 TTTTGAATTTTTGGGGA
1 CTTTGGATTTTT-AGGA
*
42595 TTTTGGATTTTTAGG
1 CTTTGGATTTTTAGG
42610 GGTTTTAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
16 11 0.29
17 26 0.68
18 1 0.03
ACGTcount: A:0.20, C:0.03, G:0.27, T:0.50
Consensus pattern (16 bp):
CTTTGGATTTTTAGGA
Found at i:42582 original size:17 final size:16
Alignment explanation
Indices: 42562--42615 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
42552 TTTTTAGGAC
*
42562 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
* *
42579 TTTGAATTTTTGGGGAT
1 TTTGGATTTTAGGGG-T
42596 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
42613 TTT
1 TTT
42616 AAAAACTTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
16 3 0.10
17 19 0.63
18 8 0.27
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.54
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:44010 original size:14 final size:13
Alignment explanation
Indices: 43991--44032 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
43981 TTTTTTTTGC
43991 TATTTTTTTGTAT
1 TATTTTTTTGTAT
*
44004 TATTTTTTGGTATT
1 TATTTTTTTGTA-T
44018 TATTTTTTTTGTAT
1 TA-TTTTTTTGTAT
44032 T
1 T
44033 TCGTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 11 0.44
14 5 0.20
15 9 0.36
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (13 bp):
TATTTTTTTGTAT
Found at i:44033 original size:15 final size:14
Alignment explanation
Indices: 43991--44033 Score: 61
Period size: 15 Copynumber: 3.1 Consensus size: 14
43981 TTTTTTTTGC
43991 TATTTTTTTGTA-T
1 TATTTTTTTGTATT
*
44004 TATTTTTTGGTATT
1 TATTTTTTTGTATT
44018 TATTTTTTTTGTATT
1 TA-TTTTTTTGTATT
44033 T
1 T
44034 CGTATAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 11 0.42
14 3 0.12
15 12 0.46
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (14 bp):
TATTTTTTTGTATT
Found at i:44393 original size:86 final size:87
Alignment explanation
Indices: 44218--44437 Score: 309
Period size: 86 Copynumber: 2.6 Consensus size: 87
44208 AAAAAAAATA
* * * *
44218 AATCGATCGAGATAACA-CACGAATCAAAATTATGCCCGGAGGTCTTACAGAATAGACTGGGATA
1 AATCGATCGGGATAACACCGCGAATCAAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGATA
*
44282 ACATCGCAGTCAAAAGATAAAG
66 ACATCGAAGTCAAAAGATAAAG
* * *
44304 AATCGATCGGGATAACACCGCGAATCGAAATTATGTCCGAAGGTCTTACAAAATCGACTGGGATA
1 AATCGATCGGGATAACACCGCGAATCAAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGATA
*
44369 ACATC-AAGTCAAAAGATAAGG
66 ACATCGAAGTCAAAAGATAAAG
* * * *
44390 AATCGATCGGGATAACACCGTGAATCAAAATTACGCTCGGAGGTCTTA
1 AATCGATCGGGATAACACCGCGAATCAAAATTATGCCCGAAGGTCTTA
44438 AGAATCATAC
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
86 72 0.61
87 46 0.39
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (87 bp):
AATCGATCGGGATAACACCGCGAATCAAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGATA
ACATCGAAGTCAAAAGATAAAG
Found at i:44456 original size:22 final size:23
Alignment explanation
Indices: 44428--44489 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
44418 AATTACGCTC
44428 GGAGGTCTTA-AGAATCATACCT
1 GGAGGTCTTACAGAATCATACCT
* *
44450 GGAGGTCTTATAGAATCATGCCT
1 GGAGGTCTTACAGAATCATACCT
*
44473 AGAGGTCTTACAGAATC
1 GGAGGTCTTACAGAATC
44490 GACTGGAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 10 0.28
23 26 0.72
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (23 bp):
GGAGGTCTTACAGAATCATACCT
Found at i:44490 original size:131 final size:132
Alignment explanation
Indices: 44344--44701 Score: 431
Period size: 131 Copynumber: 2.7 Consensus size: 132
44334 TTATGTCCGA
*
44344 AGGTCTTACAAAATCGACTGGGATAACATCAAGTCAAAAGATAAGGAATCGATCGGGATAACACC
1 AGGTCTTACAGAATCGACTGGGATAACATCAAGTCAAAAGATAAGGAATCGATCGGGATAACACC
* * * * *
44409 GTGAATCAAAATTACGCTCGGAGGTCTTAAG-AATCATACCT-GGAGGTCTTATAGAATCATGCC
66 GCGAATCAAAATTATGCCCGGAGGTCTTAAGAAATCAT-CCTCGAAGGTCTTACAGAATCATGCC
44472 TAG
130 TAG
* * *
44475 AGGTCTTACAGAATCGACTGGAATAAAATCGTAAGTCGAAAGATAAGGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACTGGGATAACATC--AAGTCAAAAGATAAGGAATCGATCGGGATAACA
** *
44540 CCGCGAATTGAAATTATGCCCGGA-GTCTT-AGAAATCATGCTCGAAGGTCTTACAGAATCATGC
64 CCGCGAATCAAAATTATGCCCGGAGGTCTTAAGAAATCATCCTCGAAGGTCTTACAGAATCATGC
*
44603 CTGG
129 CTAG
* * * ** * *
44607 AGGTCTTACAGAATTGACTCGGG-TAACATCACAAGTTAGAA-ATAAAAAATCGATCGGGACATC
1 AGGTCTTACAGAATCGACT-GGGATAACAT--CAAGTCAAAAGATAAGGAATCGATCGGGATAAC
*
44670 ACCGCAAATCAAAATTATGCCCGGAGGTCTTA
63 ACCGCGAATCAAAATTATGCCCGGAGGTCTTA
44702 CAAATCTCAA
Statistics
Matches: 192, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
131 71 0.37
132 67 0.35
133 53 0.28
134 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (132 bp):
AGGTCTTACAGAATCGACTGGGATAACATCAAGTCAAAAGATAAGGAATCGATCGGGATAACACC
GCGAATCAAAATTATGCCCGGAGGTCTTAAGAAATCATCCTCGAAGGTCTTACAGAATCATGCCT
AG
Found at i:44579 original size:21 final size:22
Alignment explanation
Indices: 44549--44614 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
44539 ACCGCGAATT
*
44549 GAAATTATGCCCGGA-GTCTTA
1 GAAATCATGCCCGGAGGTCTTA
* *
44570 GAAATCATGCTCGAAGGTCTTA
1 GAAATCATGCCCGGAGGTCTTA
* *
44592 CAGAATCATGCCTGGAGGTCTTA
1 GA-AATCATGCCCGGAGGTCTTA
44615 CAGAATTGAC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 12 0.33
22 7 0.19
23 17 0.47
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (22 bp):
GAAATCATGCCCGGAGGTCTTA
Found at i:44600 original size:23 final size:23
Alignment explanation
Indices: 44564--44620 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
44554 TATGCCCGGA
*
44564 GTCTTAGA-AATCATG-CTCGAAG
1 GTCTTACAGAATCATGCCT-GAAG
*
44586 GTCTTACAGAATCATGCCTGGAG
1 GTCTTACAGAATCATGCCTGAAG
44609 GTCTTACAGAAT
1 GTCTTACAGAAT
44621 TGACTCGGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 7 0.23
23 22 0.71
24 2 0.06
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (23 bp):
GTCTTACAGAATCATGCCTGAAG
Found at i:44707 original size:132 final size:132
Alignment explanation
Indices: 44344--44707 Score: 384
Period size: 132 Copynumber: 2.8 Consensus size: 132
44334 TTATGTCCGA
* * * **
44344 AGGTCTTACAAAATCGACTGGGATAACAT--CAAGTCA-AAAGATAAGGAATCGATCGGGATAAC
1 AGGTCTTACAGAATCGACTGGAATAAAATCACAAGT-AGAAAGATAAAAAATCGATCGGGATAAC
* * * * *
44406 ACCGTGAATCAAAATTACGCTCGGAGGTCTTAAGAATCATACCTGGAGGTCTTATAGAATCATGC
65 ACCGCGAATCAAAATTATGCCCGGAGGTCTTAA-AATCATACCTGAAGGTCTTACAGAATCATGC
44471 CTAG
129 CTAG
** * **
44475 AGGTCTTACAGAATCGACTGGAATAAAATCGTAAGTCGAAAGATAAGGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACTGGAATAAAATCACAAGTAGAAAGATAAAAAATCGATCGGGATAACA
** *
44540 CCGCGAATTGAAATTATGCCCGGA-GTCTTAGAAATCAT-GCTCGAAGGTCTTACAGAATCATGC
66 CCGCGAATCAAAATTATGCCCGGAGGTCTTA-AAATCATACCT-GAAGGTCTTACAGAATCATGC
*
44603 CTGG
129 CTAG
* * * * *
44607 AGGTCTTACAGAATTGACTCGG-GTAACATCACAAGTTAG-AA-ATAAAAAATCGATCGGGACAT
1 AGGTCTTACAGAATCGACT-GGAATAAAATCACAAG-TAGAAAGATAAAAAATCGATCGGGATAA
*
44669 CACCGCAAATCAAAATTATGCCCGGAGGTCTTACAAATC
64 CACCGCGAATCAAAATTATGCCCGGAGGTCTTA-AAATC
44708 TCAAAATCTT
Statistics
Matches: 197, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
131 68 0.35
132 74 0.38
133 55 0.28
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.23
Consensus pattern (132 bp):
AGGTCTTACAGAATCGACTGGAATAAAATCACAAGTAGAAAGATAAAAAATCGATCGGGATAACA
CCGCGAATCAAAATTATGCCCGGAGGTCTTAAAATCATACCTGAAGGTCTTACAGAATCATGCCT
AG
Found at i:45505 original size:33 final size:33
Alignment explanation
Indices: 45409--45685 Score: 280
Period size: 33 Copynumber: 8.5 Consensus size: 33
45399 TTGGGGCTAA
* *
45409 ATAAACTTGGCTTAAA--TTTATTGAA-GGCCAG
1 ATAAACTGGGCTTAAAGCTTCATT-AATGGCCAG
* * *
45440 CTAAACT-GGCTTAAATCTTCATT--TGAAACCAG
1 ATAAACTGGGCTTAAAGCTTCATTAATG--GCCAG
* * * * *
45472 ATAAACTAGGTTTAAAACCTCATTGATGGCCAG
1 ATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
* *
45505 ATGAATTGGGCTTAAAGCTTCATTAATGGCCAG
1 ATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
* *
45538 ATAAATTGGGCTTAAAGTTTCATTAA-GAGCCAG
1 ATAAACTGGGCTTAAAGCTTCATTAATG-GCCAG
45571 ATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
1 ATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
* ** * *
45604 ATAAACTAGGCTTAAATTTTCATTGATGGCTAG
1 ATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
* *
45637 ATAAACTAGGCTTAAAACTTCATTAATGGCCAG
1 ATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
45670 ATAAACTGGGCTTAAA
1 ATAAACTGGGCTTAAA
45686 TTTTATTTTA
Statistics
Matches: 207, Mismatches: 29, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
30 9 0.04
31 6 0.03
32 16 0.08
33 173 0.84
34 1 0.00
35 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (33 bp):
ATAAACTGGGCTTAAAGCTTCATTAATGGCCAG
Found at i:45686 original size:66 final size:66
Alignment explanation
Indices: 45409--45689 Score: 322
Period size: 66 Copynumber: 4.3 Consensus size: 66
45399 TTGGGGCTAA
* * * *
45409 ATAAACTTGGCTTAAA-TTT-ATTGAAGGCCAGCTAAACT-GGCTTAAATCTTCATT--TGAAAC
1 ATAAACTAGGCTTAAATTTTCATTGAAGGCCAGATAAACTGGGCTTAAAGCTTCATTAATG--GC
45469 CAG
64 CAG
* *** * * *
45472 ATAAACTAGGTTTAAAACCTCATTGATGGCCAGATGAATTGGGCTTAAAGCTTCATTAATGGCCA
1 ATAAACTAGGCTTAAATTTTCATTGAAGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
45537 G
66 G
* * *
45538 ATAAATTGGGCTTAAAGTTTCATT-AAGAGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
1 ATAAACTAGGCTTAAATTTTCATTGAAG-GCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
45602 AG
65 AG
* * * *
45604 ATAAACTAGGCTTAAATTTTCATTGATGGCTAGATAAACTAGGCTTAAAACTTCATTAATGGCCA
1 ATAAACTAGGCTTAAATTTTCATTGAAGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
45669 G
66 G
*
45670 ATAAACTGGGCTTAAATTTT
1 ATAAACTAGGCTTAAATTTT
45690 ATTTTATTTT
Statistics
Matches: 184, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
63 14 0.08
64 1 0.01
65 17 0.09
66 148 0.80
67 2 0.01
68 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (66 bp):
ATAAACTAGGCTTAAATTTTCATTGAAGGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
G
Found at i:45695 original size:5 final size:5
Alignment explanation
Indices: 45685--45714 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
45675 CTGGGCTTAA
45685 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
45715 TAGAATTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:47808 original size:26 final size:26
Alignment explanation
Indices: 47757--47809 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
47747 CCAGTCCAAT
*
47757 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
47783 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
47809 C
1 C
47810 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:50412 original size:26 final size:26
Alignment explanation
Indices: 50372--50424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
50362 CCGGTTAGAT
50372 CTTACACTGGCAATGAACTCCATATG
1 CTTACACTGGCAATGAACTCCATATG
* * *
50398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGCAATGAACTCCATATG
50424 C
1 C
50425 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGGCAATGAACTCCATATG
Found at i:51498 original size:23 final size:23
Alignment explanation
Indices: 51468--51519 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
51458 CCATTTGAAA
51468 AAACTTTAATGGCTACTGGCATC
1 AAACTTTAATGGCTACTGGCATC
51491 AAACTTTAATGGCTACTGGCATC
1 AAACTTTAATGGCTACTGGCATC
51514 AAACTT
1 AAACTT
51520 GTAAAATCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (23 bp):
AAACTTTAATGGCTACTGGCATC
Found at i:53384 original size:894 final size:893
Alignment explanation
Indices: 51180--53651 Score: 2939
Period size: 894 Copynumber: 2.7 Consensus size: 893
51170 TGATGCTTTG
* *
51180 AGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGC-CTATAAATTCATACAATGG
1 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTC-GTAAATTCATACAATGG
* * *
51244 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATTTTTA
65 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
* * *
51309 AAACTTTTTATGGTTTGAGACTTGTTTAAAATTTTTTCAGAAGGAGTTTTGTTTTTTTGGCCCCA
130 AAACTTTTTACGGTTTGGGA-TTTTTTAAAATTTTTTCAGAAGGA-----G---TTTTGGCCCCA
* * * * * *
51374 AACATGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAGAAACTCAA
186 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAA
* * ** * ** * *
51439 AGTGTACAGGATTTTGTGACCATTTGAAAAAACTTTAATGGCTACTGGCATCAAACTTTAATGGC
251 AGTGTACAGGA-TTTGTGACCATTTGAAAAAA--GT-GTCCCCA-TTTCA-AAAACCTTAATGGC
* * * *
51504 TACTGGCATCAAACTTGTAAAATCTCAAATGCTTTTTACGGGGGTGTGAGTTCTCGAGGTTTGAT
310 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
51569 GAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCAACCATC-ATAAATCGTGTGCGCACACC
375 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGA-ACATCATGTGCGTACACC
* * **
51633 CCCTACCCCCTGAATCGCCGGAACCCCAATGCCGC-CATTC-GGTTC-CTGGTGGATCGCTCCTG
439 CCCT-CCCCCTCAATCGCCGGAACCCCAATGCCGCGC--TCAGGTTCTC-CGACGAT-GCTCC-G
*
51695 TA-ATGTGTGGCCCCGAGC-AAAACAAAATACGGCAAC-A-CACATAGCCTGAGCCCAGCATGTG
498 -AGATG-GT-GCCCCGAGCGAAAA-AAAATACGGC-ACTAGCACAT-GCCCGAGCCCAGCATGTG
** ** *
51756 CACCCACAA-CCTTGGTCCCAATCCGATCTTACACCTGGGAATGAACTCTTGTAACGCTTAGACT
557 CACCCGTAACCCTTGGT-CCGGTCCGATCTTACA-CTGGGAATGAACTC-TGT-ATGCTTAGACT
** *
51820 GGG-ATGAACTCCGTATGCCTAAGTCAACCCATTAAAATGAGCGTGCGACGCTCAACCGACCAAA
618 GGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGACGCTCAACCGACCAAA
* * * *
51884 AGGGCAGAATGCGTAAGCCAGGGAATCGAACTGGGTCCCCTACGTGCTGCGATCCTGCTTGCCAT
682 AGGGCAGAATACGCAAGCCAGGGAATCGAACCGGGTCCCCTACGTGCTGCGATCCTACTTGCCAT
* * * *
51949 AAACCCTCAGTCCGGTCTGAATCTTATGACTGGGAATGAAACTCCATATGCATAGCCAACTGACG
747 AAACCCTCAATCCGGTCCGAATCTTATGACTAGGAATGAAACTCCATATGCATAGCCAACCGACG
* ** * *
52014 AAACGAGCGGGTGGGTTGGCACTACGCGGCCAAGAGGGGCGGGATGCGCAAGCTGTGATCGATAG
812 AAACGAGCGGGCGGGCGGGCACTACGCGGCCAAGAGAGGCGGGATGCGCAAGCCGTGATCGATAG
52079 GAGTGGTAGGTGGGTTT
877 GAGTGGTAGGTGGGTTT
* * * *
52096 TGGCACATCTTCCATA-TTCTACCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGG
1 AGGCACATCTT-CATATTTCTGCCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGG
* *
52160 T-CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCT
65 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
* * * *
52224 AAACTTTTTACGGTTCAGGAATTTTTTAAAATTTTTTCAGAAGGAGCTTTGGCCCCAAAGTTGGT
130 AAACTTTTTACGGTT-TGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
52289 AGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAATATTTAGCT-AAAACTCAAACTGGATC
194 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTA-C
** *
52353 --GATAGGGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAGACCTTAATGGCTACTGGCAGCAA
258 AGGAT-TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACCTTAATGGCTACTGGCAGCAA
* * *
52416 ACCTGGAAAATCTCAAATCCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
322 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
52481 GCTAATATAAGGGCCAAGTACCAGCACCCAACGAACATCATGTGCATACACCCCCTCCCCCTCAA
387 GCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGTACACCCCCTCCCCCTCAA
*
52546 TCACCGGAACCCCAATGCCGTCGCTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGCG
452 TCGCCGGAACCCCAATGCCG-CGCTCAGGTTCTCCGACGATGCTCCGA-GATGGTGCCCCGAGCG
* * ** **
52611 AAAAAAAATCCGACACTAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCAGTTTGGTC
515 AAAAAAAATACGGCACTAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCGGTC
* * * *
52676 TGATCTTACACTAGGAATGAACTCTGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
580 CGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * ** ** * *
52741 ACCCACGAAACGAGCGTGTGGGCGTTCAGCTGGCCAACCGGGCAGGTTACGCAAGCC-GGGGATT
645 ACCCACGAAACGAGCGTG-CGACGCTCAACCGACCAAAAGGGCAGAATACGCAAGCCAGGGAATC
* * * * *
52805 G-ACCGGGTCCCCCCTTCGTGTTGTTGATCCTAC-TGCCGT-AACCCTCAATCTGGTCCG-ATCT
709 GAACCGGGT--CCCCTACGTGCTG-CGATCCTACTTGCCATAAACCCTCAATCCGGTCCGAATCT
* * * *
52866 TA-GACTAGGAATG-AACTTCGTATGCCTAAGCCAACCGATGAAACGATG-GGGCGGGCGGGCAC
771 TATGACTAGGAATGAAACTCCATATGCAT-AGCCAACCGACGAAACGA-GCGGGCGGGCGGGCAC
* * *
52928 TACGTCGGCC-AGAGAGGCGGGATGCGCAAGCCGTGGATTGATA-GTGTGGTTGGTGGGTTT
834 TACG-CGGCCAAGAGAGGCGGGATGCGCAAGCCGT-GATCGATAGGAGTGGTAGGTGGGTTT
*
52988 AGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTATGGCTCGTAAATTCATACAATGGT
1 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGT
* * *
53053 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTGTTTTTCACGATTTTCAA
66 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
*
53118 AACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCTAACTTGGTA
131 AACTTTTTACGGTTTGGGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
53183 GACGTTATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
195 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAG
* *
53248 GATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACC
260 GATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACCTTAATGGCTACTGGCAGCAAACC
*
53313 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
53378 AATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGTACACCCCCCCGCCCCCCCAAT
390 AATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGTACA--CCCCCTCCCCCTCAAT
* * * * * *
53443 TGCCGGAACCTCAATGCCGCTGGTCAGGTTCTCCGACGTTGCTTCGGTGATGGTGCCCC-AGCCG
453 CGCCGGAACCCCAATGCCGC-GCTCAGGTTCTCCGACGATGC-TCCGAGATGGTGCCCCGAG-CG
** * *
53507 AAAAAAAATGTGGCA-TCAGCACATGCGCGAGCCCAGCATGTGCAGCCGTAACCCTTGGTCCGGT
515 AAAAAAAATACGGCACT-AGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCGGT
**
53571 CCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
579 CCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
*
53636 AACCCACGGAACGAGC
644 AACCCACGAAACGAGC
53652 ATACGGGTGC
Statistics
Matches: 1339, Mismatches: 180, Indels: 94
0.83 0.11 0.06
Matches are distributed among these distances:
891 15 0.01
892 142 0.11
893 175 0.13
894 216 0.16
895 79 0.06
896 211 0.16
897 57 0.04
898 17 0.01
899 37 0.03
900 137 0.10
901 6 0.00
902 3 0.00
903 1 0.00
904 1 0.00
905 19 0.01
906 12 0.01
907 56 0.04
910 1 0.00
915 95 0.07
916 55 0.04
917 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (893 bp):
AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
AACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
ATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACCTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGTACACCCCCTCCCCCTCAATCGC
CGGAACCCCAATGCCGCGCTCAGGTTCTCCGACGATGCTCCGAGATGGTGCCCCGAGCGAAAAAA
AATACGGCACTAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCGGTCCGATCT
TACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGACGCTCAACCGACCAAAAGGGCAGAATACGCAAGCCAGGGAATCGAACCGG
GTCCCCTACGTGCTGCGATCCTACTTGCCATAAACCCTCAATCCGGTCCGAATCTTATGACTAGG
AATGAAACTCCATATGCATAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCGGCCAAG
AGAGGCGGGATGCGCAAGCCGTGATCGATAGGAGTGGTAGGTGGGTTT
Found at i:53612 original size:26 final size:26
Alignment explanation
Indices: 53576--53628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
53566 CCGGTCCGAT
53576 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
53602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
53628 C
1 C
53629 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:53682 original size:896 final size:893
Alignment explanation
Indices: 51180--53747 Score: 3010
Period size: 896 Copynumber: 2.8 Consensus size: 893
51170 TGATGCTTTG
* *
51180 AGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGC-CTATAAATTCATACAATGG
1 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTC-GTAAATTCATACAATGG
* * *
51244 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACAATTTTTA
65 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
* * *
51309 AAACTTTTTATGGTTTGAGACTTGTTTAAAATTTTTTCAGAAGGAGTTTTGTTTTTTTGGCCCCA
130 AAACTTTTTACGGTTTGGGA-TTTTTTAAAATTTTTTCAGAAGGA-----G---TTTTGGCCCCA
* * * * * *
51374 AACATGGTAGGCATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAGAAACTCAA
186 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAA
* * ** * ** * *
51439 AGTGTACAGGATTTTGTGACCATTTGAAAAAACTTTAATGGCTACTGGCATCAAACTTTAATGGC
251 AGTGTACAGGA-TTTGTGACCATTTGAAAAAA--GT-GTCCCCA-TTTCA-AAAACCTTAATGGC
* * * *
51504 TACTGGCATCAAACTTGTAAAATCTCAAATGCTTTTTACGGGGGTGTGAGTTCTCGAGGTTTGAT
310 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * *
51569 GAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCAACCATC-ATAAATCGTGTGCGCACACC
375 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGA-ACATCATGTGCGTACACC
* * *** * ** * *
51633 CCCTACCCCCTGAATCGCCGGAACCCCAATGCCGCCATTC-GGTTC-CTGGTGGATCGCTCCTGT
439 CCCCACCCCCTCAATCGCCGGAACCCCAATGCCGCTGCTCAGGTTCTC-CGACG-TTGCTCCGGT
*
51696 AATGTGTGGCCCCGAGC-AAAACAAAATACGGCAACA-CACATAGCCTGAGCCCAGCATGTGCAC
502 GATG-GT-GCCCCGAGCGAAAA-AAAATACGGC-ACAGCACAT-GCC-GAGCCCAGCATGTGCAC
** ** *
51759 CCACAA-CCTTGGTCCCAATCCGATCTTACACCTGGGAATGAACTCTTGTAACGCTTAGACTGGG
561 CCGTAACCCTTGGT-CCGGTCCGATCTTACA-CTGGGAATGAACTC-TGT-ATGCTTAGACTGGG
** * * * * *
51823 -ATGAACTCCGTATGCCTAAGTCAACCCATTAAAATGAGCGTGC-GACGCTCAACCGACCAAAAG
622 AATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCTGGCC-AAAG
* * * *
51886 GGCAGAATGCGTAAGCCAGGGAATCGAACTGGGT--CCCCTACGTGCTG-CGATCCTGCTTGCCA
685 GGCAGGATGCGCAAGCC-GGGGATCG-ACCGGGTCCCCCCTACGTGCTGTCGATCCTGC-TGCCA
* * * *
51948 TAAACCCTCAGTCCGGTCTGAATCTTATGACTGGGAATGAAACTCCATATGCATAGCCAACTGAC
747 T-AACCCTCAATCCGGTCCGAATCTTATGACTAGGAATGAAACTCCATATGCATAGCCAACCGAC
* ** * *
52013 GAAACGAGCGGGTGGGTTGGCACTACGCGGCCAAGAGGGGCGGGATGCGCAAGCTGTGATCGATA
811 GAAACGAGCGGGCGGGCGGGCACTACGCGGCCAAGAGAGGCGGGATGCGCAAGCCGTGATCGATA
52078 GGAGTGGTAGGTGGGTTT
876 GGAGTGGTAGGTGGGTTT
* * * *
52096 TGGCACATCTTCCATA-TTCTACCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGG
1 AGGCACATCTT-CATATTTCTGCCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGG
* *
52160 T-CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCT
65 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
* * * *
52224 AAACTTTTTACGGTTCAGGAATTTTTTAAAATTTTTTCAGAAGGAGCTTTGGCCCCAAAGTTGGT
130 AAACTTTTTACGGTT-TGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
52289 AGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAATATTTAGCT-AAAACTCAAACTGGATC
194 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTA-C
** *
52353 --GATAGGGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAGACCTTAATGGCTACTGGCAGCAA
258 AGGAT-TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACCTTAATGGCTACTGGCAGCAA
* * *
52416 ACCTGGAAAATCTCAAATCCACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
322 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
52481 GCTAATATAAGGGCCAAGTACCAGCACCCAACGAACATCATGTGCATACA-CCCCCTCCCCCTCA
387 GCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGTACACCCCCCACCCCCTCA
* * **
52545 ATCACCGGAACCCCAATGCCG-TCGCTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAG
452 ATCGCCGGAACCCCAATGCCGCT-GCTCAGGTTCTCCGACGTTGCTCCGGTGATGGTGCCCCGAG
* * ** **
52609 CGAAAAAAAATCCGACACTAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCAGTTTGG
516 CGAAAAAAAATACGGCAC-AGCACATG-CCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCGG
* * * *
52674 TCTGATCTTACACTAGGAATGAACTCTGTATGCCTAGACTGGGAATGAACTCTGTATGCCTAAGT
579 TCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
52739 CAACCCACGAAACGAGCGTGTGGGCGTTCAGCTGGCCAACCGGGCAGGTTACGCAAGCCGGGGAT
644 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAA-AGGGCAGGATGCGCAAGCCGGGGAT
* * * * * * *
52804 TGACCGGGTCCCCCCTTCGTGTTGTTGATCCTACTGCCGTAACCCTCAATCTGGTCCG-ATCTTA
708 CGACCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCTCAATCCGGTCCGAATCTTA
* * * *
52868 -GACTAGGAATG-AACTTCGTATGCCTAAGCCAACCGATGAAACGATG-GGGCGGGCGGGCACTA
773 TGACTAGGAATGAAACTCCATATGCAT-AGCCAACCGACGAAACGA-GCGGGCGGGCGGGCACTA
* * *
52930 CGTCGGCC-AGAGAGGCGGGATGCGCAAGCCGTGGATTGATA-GTGTGGTTGGTGGGTTT
836 CG-CGGCCAAGAGAGGCGGGATGCGCAAGCCGT-GATCGATAGGAGTGGTAGGTGGGTTT
*
52988 AGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTATGGCTCGTAAATTCATACAATGGT
1 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGT
* * *
53053 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTGTTTTTCACGATTTTCAA
66 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
*
53118 AACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCTAACTTGGTA
131 AACTTTTTACGGTTTGGGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
53183 GACGTTATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
195 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAG
* *
53248 GATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACC
260 GATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACCTTAATGGCTACTGGCAGCAAACC
*
53313 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
53378 AATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGTACACCCCCCCGCCCCCCCAAT
390 AATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGTACA-CCCCCCACCCCCTCAAT
* * * *
53443 TGCCGGAACCTCAATGCCGCTGGTCAGGTTCTCCGACGTTGCTTCGGTGATGGTGCCCC-AGCCG
454 CGCCGGAACCCCAATGCCGCTGCTCAGGTTCTCCGACGTTGCTCCGGTGATGGTGCCCCGAG-CG
** *
53507 AAAAAAAATGTGGCATCAGCACATGCGCGAGCCCAGCATGTGCAGCCGTAACCCTTGGTCCGGTC
518 AAAAAAAATACGGCA-CAGCACATGC-CGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCGGTC
**
53572 CGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
581 CGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
53637 ACCCACGGAACGAGCATACGGGTGCTCAGCTGGCTAGAGGGGCAGGATGCGCAAGCCGAGGATCG
646 ACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCA-AAGGGCAGGATGCGCAAGCCGGGGATCG
* * * *
53702 GCCGGGCCCCCCCCTGCATGCTGTCGATCCTGCTGCCATAACCCTC
710 ACCGGG-TCCCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCTC
53748 GGTTCGCATC
Statistics
Matches: 1406, Mismatches: 208, Indels: 95
0.82 0.12 0.06
Matches are distributed among these distances:
891 15 0.01
892 142 0.10
893 175 0.12
894 218 0.16
895 76 0.05
896 255 0.18
897 86 0.06
898 18 0.01
899 41 0.03
900 128 0.09
901 5 0.00
902 3 0.00
903 1 0.00
904 1 0.00
905 19 0.01
906 12 0.01
907 56 0.04
910 1 0.00
915 95 0.07
916 55 0.04
917 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (893 bp):
AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
AACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
ATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACCTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGTACACCCCCCACCCCCTCAATCG
CCGGAACCCCAATGCCGCTGCTCAGGTTCTCCGACGTTGCTCCGGTGATGGTGCCCCGAGCGAAA
AAAAATACGGCACAGCACATGCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCGGTCCGATC
TTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGCAGGATGCGCAAGCCGGGGATCGACCGGG
TCCCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCTCAATCCGGTCCGAATCTTATGACTAGG
AATGAAACTCCATATGCATAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCGGCCAAG
AGAGGCGGGATGCGCAAGCCGTGATCGATAGGAGTGGTAGGTGGGTTT
Found at i:54399 original size:26 final size:26
Alignment explanation
Indices: 54370--54422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
54360 CCGGTCCGAT
*
54370 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
*
54396 CTTAGACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
54422 C
1 C
54423 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:56896 original size:26 final size:26
Alignment explanation
Indices: 56858--56910 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
56848 CTGGTCTGAA
* *
56858 CTTACACTGGGAATGATCTCCGTATG
1 CTTACACTCGGAATGAACTCCGTATG
*
56884 CTTAGACTCGGAATGAACTCCGTATG
1 CTTACACTCGGAATGAACTCCGTATG
56910 C
1 C
56911 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTCGGAATGAACTCCGTATG
Done.