Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167902.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59728
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Found at i:200 original size:25 final size:22
Alignment explanation
Indices: 154--202 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
144 TCATAGACCA
*
154 GAACTCCGTATCAGACTGGAAT
1 GAACTCCGTATCAGACTAGAAT
176 GAACTCCGTATGCTTAGACTAGAAT
1 GAACTCCGTAT-C--AGACTAGAAT
201 GA
1 GA
203 CCCTGAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 11 0.48
23 1 0.04
25 11 0.48
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (22 bp):
GAACTCCGTATCAGACTAGAAT
Found at i:1030 original size:26 final size:26
Alignment explanation
Indices: 994--1046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
984 CTGGTCCGAT
994 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
1020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
1046 C
1 C
1047 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:4564 original size:25 final size:26
Alignment explanation
Indices: 4530--4581 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4520 GTCGGTCGAT
4530 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
4555 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4581 C
1 C
4582 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:5452 original size:26 final size:26
Alignment explanation
Indices: 5423--5475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5413 CCAAACCGAT
5423 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
5449 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
5475 C
1 C
5476 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:6150 original size:26 final size:26
Alignment explanation
Indices: 6114--6166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6104 CCAGTCCGAT
*
6114 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
6140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
6166 C
1 C
6167 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:6861 original size:26 final size:26
Alignment explanation
Indices: 6832--6910 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
6822 CCGATCCGAT
*
6832 CTTACACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6884 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6910 C
1 C
6911 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:8694 original size:26 final size:26
Alignment explanation
Indices: 8643--8695 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8633 CCGGTCCGAT
* *
8643 CTTACACTGGGAATGAACTTCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
8669 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
8695 C
1 C
8696 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:10010 original size:898 final size:890
Alignment explanation
Indices: 6325--10513 Score: 4960
Period size: 898 Copynumber: 4.7 Consensus size: 890
6315 TTCGTATGCC
* * **
6325 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCAAAACT
* * * * * * * *
6390 TTTTAAGATTCGAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCACTAAACTTGGTAGGCT
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
6455 TGAT-CTTGTATTTTTGTTGGCATGCATAAAAAAAATCAGCTAAAAACTCAAAGTGTACAGGATT
131 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGATT
* * * * *
6519 TTGTGACCATTTGAAAAATGTGCCCCCAATTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGT
196 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGT
* * *
6584 AAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
261 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAAT
* * * * * *
6649 ATAAGGGCCAAGTACCAGTACCCATCGTACATCATGTGCACACACCCCCCCGCCCCCCAATTGCC
326 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCA-CTCCCC-CCCCCCAATCGTC
** *
6714 GGAACCCCAATGCCATCGGTTAGGTTCT-C--TG--G-T----GATGGTGCCCCGGGCGAAAAAA
387 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCCCCGGGCGAAAAAA
** * * * * **
6769 AATATGGCACCAGCACATGCCCGAGCCTAGGATGTGCACCCGTAACCCTTGGTCCGATCCGATCT
452 AATGCGACACCAGCACATGCCCAAGCCAAGCATGTGCACCCACAACCC----T-CG----G----
* *
6834 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
504 T-C-C---G---G---TCCG-AT-CTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATG
* * *
6899 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCAG
556 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * ** * * **
6964 GATGCGCAAGTCAAGGATTGGCCGA-GTCCCCTCCTACGTGCTATCGATCCTGCTACTGCAACCG
621 GATGCACAAGCCGGGGATCGGCC-ATGTCCCC-CCTACGTGCTACCGATCCTGCTACCACAACCG
* * ** * *
7028 TCGGTCTGATCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGACGAAATGAGC
684 TCAGTCTGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * **
7093 GGACGGGCAGGCACTACGA-TAGTTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
748 GGGCGGGCGGGCACTAC-ACTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
**
7157 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTGCGGCTTGTAAATTC
812 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
7222 ATACAATGGTCCTT
877 ATACAATGGTCCCT
* **
7236 TAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTTGAAACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCAAAACT
* * * *** *
7301 TTTTATGGTTCGGGATTTTTTTAAAATTTTTTTAGAACGAGTTTTGGTAACAAACCTGGTAGACG
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
7366 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTTAAAAA-TCGAAGTGTACAGGAT
131 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG-TTAAAAACTCGAAGTGTACAGGAT
* *
7430 TTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTG
195 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTG
* * * *
7494 TAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATA-GGACACCA
260 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGA-GCCA
* * *
7558 ATATAAGGGCCAAGTACCAGCACCTATCGCACATCATG-GTGCACACCCCCCCCCCAATCGTCGG
324 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACTCCCCCCCCCCAATCGTCGG
*
7622 AACCCCAATGCCGCCGGTCAGGTTCTACGATGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAAA
389 AACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCCCCGGGCGAAAAAAA
* ** * * *
7686 ATGCGGCACCAGCACATGCCTGAGCCCAGCACGTGCACCCACAACCCTCGGTCTGGTCCGATCTT
453 ATGCGACACCAGCACATGCCCAAGCCAAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTT
* * * * * *
7751 ACCCTGGGAATTAACTTCGTATGCTTAGACTAGGTATTAACTCTGTATGCCTAAGTCCACCCACG
518 ACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* ** * * * * * **
7816 AAACAAGCGTGCGGGCATTCAGTCGGCCAGA-GGGCAAGGATGCGCAA-CTGGGGAGCGGTCGGG
583 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCACAAGCCGGGGATCGGCCATG
*** ** * * *
7879 TCCCTTTTGTGTGCT-CTCGATTCTGCTACCGCAATCC-TCAGTCTGGTCCGATCTTAAACCTGG
647 TCCCCCCTACGTGCTAC-CGATCCTGCTACCACAA-CCGTCAGTCTGGTCCGATCTTAGA-CTGG
* * * * *
7942 AATGAACTTCGTACGCCTAAACCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
709 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACTGGCCAG
* * *
8007 AGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATT
774 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
8072 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
839 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
8124 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTGTTTTTTTCACGATTTTCAAAACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCAAAACT
* * * *
8189 TTTTACGGTTTGAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACG
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * ** * * *
8254 T-ATCCTTGTTTTTTTTTTTGGTGTGCACAAAAAAATTCAGGTAAGAACTCCAAGTGTACAGGAT
131 TGATCCTTG-TATTTTTATTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGAT
* *
8318 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACA-CTGTAATGGCTACTGGTAGCAAACCT
195 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCT-TAATGGCTACTGGCAGCAAACCT
* * ** * *
8382 GTAAAATCTCAAATGCTCTTTAAGGGCGAGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCA
259 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCA
* * * *
8447 ATATAAGGGCCAAGTACCATCACCGATCGCACAACATGTGCACACAACCCCCTTCTCCCCCCCGC
324 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGC-A-------CT---CCCC-C
* *
8512 GCCCCCAATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCC---G--G-T----GATTGTGCC
375 -CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCC
* * * * * * * *
8567 CTGGGCGAAAAAAAATGTGGCACCAGCACATGCTCGAGGCTAGCATGTCCACCCACAACCCTCGG
439 CCGGGCGAAAAAAAATGCGACACCAGCACATGCCCAAGCCAAGCATGTGCACCCACAACCCTCGG
*
8632 TCCGGTCCGATCTTACACTGGGAATGAACTTCATATGCTTAGACTAGGAATGAACTCCGTATGCC
504 TCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCC
* * * * * * *
8697 TAAGTCAACCCATGAAACAAGCGAGCGGGCGCTCAGCTGGCCAAAAGGGCAGGATGCACAATCCG
569 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCG
* * ** * * * * ** *
8762 GGGATCAGCC-TGGTCCCCCCCTACGTGCTGCTAATCTTGCTGCTACAACCTTTGGT-TCGGTCA
634 GGGATCGGCCAT-GT-CCCCCCTACGTGCTACCGATCCTGCTACCACAACCGTCAGTCT-GGTCC
* ** * *
8825 GATCTTAGACTAGGGATGAACTCCGTATGCCTAAGGGAACTGACGAAACGAGCGGGCGGGTGGGC
696 GATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * *
8890 ACTAC-GTCGGCCAGAGAGGCGAGATGTC-CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
760 ACTACACT-GGCCAGAGAGACGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
8953 GGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
823 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
9018 CCT
888 CCT
* * * *
9021 TAAGCCTTCAT-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTATCGAAACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCAAAACT
* * **
9085 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCATAAGGATTTTTGGCCCCAAACTTGGTAGATT
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
9150 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGATT
131 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGATT
9215 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGT
196 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGT
9280 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGAGCCAAT
261 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAAT
*
9344 ATAAGGGCCAAGTACTAGCACCCAT-GACACATCATGTGCGCTAACCCCTCCCTGCCCCCCCAAT
326 ATAAGGGCCAAGTACCAGCACCCATCG-CACATCATGTGCGC--A---CTCCC--CCCCCCCAAT
* * * * * *
9408 GGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCAGCAATGGTGCCCCAGGCGA
383 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCC-GCGATGGTGCCCCGGGCGA
* * ***
9473 AAAAAAATACGACACCAACACATGCCCAAGCCAAGCATGTGCACTTGCAACCCTCGGTCCGGTCC
447 AAAAAAATGCGACACCAGCACATGCCCAAGCCAAGCATGTGCACCCACAACCCTCGGTCCGGTCC
* * * *
9538 GATCTTACGCTGGGAATGAACTTCGTACGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
512 GATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
*
9603 CTCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG
577 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG
* * *
9668 CCATGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAAACC-TCAGTCAGCTCCGATCTTAGAC
642 CCATGTCCCCCCTACGTGCTACCGATCCTGCTACCAC-AACCGTCAGTCTGGTCCGATCTTAGAC
* * *
9732 TGGAAATGAACTCCGTATGCCTAAGCCATCCAACGAAACGAGCGGGCGGGGGGGCACTACACTGG
706 TGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACTGG
* *
9797 CTAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
770 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
9862 TATTTCTGCGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
835 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
9918 TAAGCCTTCATTTGAAGTTTCATGGCAAGATGACTCATTTTCTGTTTTTCACGATTTTCAAAACT
1 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCAAAACT
* * * **
9983 TTTTACGGTTTGGGATTTTTCTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATA
66 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
10048 TGATCCTTTTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTAAAGGATT
131 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGATT
* * *
10113 TTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGT
196 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGT
* *
10178 AAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
261 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAAT
* * * * *
10243 ATAAGGGCCAAGTACCAGTACCCATCGCACATCATTTGCGCA--CACCCACCCAAATCGTCGGAA
326 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACTCCCCCCCCCCAATCGTCGGAA
* * * * ***
10306 CCTCGATGCCGTCGGTCAGGTTCTCCGATGATGCTTCGACGATGGTGCTTTGGGCGAAAAAAAAT
391 CCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCG-CGATGGTGCCCCGGGCGAAAAAAAAT
* * * ** * *
10371 GC-AGCACCAGCACATGCCCAAGCCCAA-CATGTGCAACCGCAACCCTCGATCCATTTCAATCTT
455 GCGA-CACCAGCACATGCCCAAG-CCAAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTT
* * * *
10434 ACACTGGTAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
518 ACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
*
10499 AAACGAGCGGGCGGG
583 AAACGAGCGTGCGGG
10514 TGGGCACTAC
Statistics
Matches: 2842, Mismatches: 355, Indels: 183
0.84 0.11 0.05
Matches are distributed among these distances:
887 53 0.02
888 367 0.13
889 165 0.06
890 284 0.10
891 6 0.00
892 8 0.00
893 4 0.00
894 17 0.01
895 196 0.07
896 288 0.10
897 440 0.15
898 477 0.17
899 46 0.02
900 3 0.00
902 2 0.00
903 5 0.00
904 1 0.00
905 40 0.01
906 36 0.01
907 7 0.00
908 2 0.00
909 2 0.00
910 3 0.00
911 271 0.10
912 52 0.02
913 6 0.00
916 45 0.02
917 16 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCAAAACT
TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACTCCCCCCCCCCAATCGTCGGAA
CCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGCGATGGTGCCCCGGGCGAAAAAAAATG
CGACACCAGCACATGCCCAAGCCAAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACA
CTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCATGTCCC
CCCTACGTGCTACCGATCCTGCTACCACAACCGTCAGTCTGGTCCGATCTTAGACTGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACTGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
Found at i:12071 original size:26 final size:26
Alignment explanation
Indices: 12042--12094 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12032 CCGGTTCGAT
12042 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
12068 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
12094 C
1 C
12095 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:12479 original size:897 final size:893
Alignment explanation
Indices: 10457--14523 Score: 5401
Period size: 871 Copynumber: 4.6 Consensus size: 893
10447 ACTCCGTATG
* **
10457 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCACT
* * * * *
10522 ACG-CTGGCCAGAGA-GCGGCATGCGCAAGTCGT-GATCGATAGCGGTGGTAGGTGGGTTTAGGC
65 ACGTC-GACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAG-GGTGGTAGGTGAGTTTAGGC
* * *
10584 ACATCTTCATATTTTCTACCATGCCGATGCC-GTTTTATGGCTTGTAAATTCATACAATGGTCCC
128 ACATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * **
10648 TTAAGCCTTCATGTGAAGTTTCATAGAAAGAAAACTCGTTTTCTATTTTTCACGATTTTTGAAAC
192 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
10713 TTTTTACGGTTC--GAGTTTTTTTAAAACTTTTTCAGAAGGACTTTTGGCCCCAAACTTGGTAGA
257 TTTTTACGGTTCAGGA-TTTTTTAAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
10776 TGTGATCGTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGA
321 CGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* *
10841 TTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
386 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
10906 GTAAAATCTCAATTGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCA
451 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
10971 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGCCCCCC-CAA
516 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGCCCCCCTCAA
** * * * * * *
11035 TCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGGGTG
580 TCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTG-CCCTGGCG
** ** * *
11100 AAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGTAACCC-C--T---G--
644 AAAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCA-CCGCAACCCTCGGTCCGGTT
*
11157 G----T-C-C--GG--T---CT--G-ATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
708 GATCTTACACTGGGAATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * **
11206 CCACGAAACGAGCGCACGGGCGCTCAGCCGGCCTGAGGGGCAGGATGTGCAAGCCGGGGATCGAC
773 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGAC
* * * * ***
11271 C-GGTCCCCCCCTACGTGCTGTCAAT-TTGGCTACTACAACCCTTGATCTGGTATGAT
838 CGGGT-CCCCCCTACGTGCTGTCGATCTT-GCTACCACAACCCTCGATCCGGTCCAAT
** * * *
11327 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGGGCAGGCACT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCACT
* * *
11392 ACGTCGACCAGAGAGGCGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCAGTTTAGGCAC
65 ACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCAC
* *
11457 ATCTTCATATTTCTGCCATGCTAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTA
130 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
11522 AGCCTTCATGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
11587 TTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGA-TTTTAGGCCCCAAACTTTGTAGACAT
260 TTACGGTTCAGGATTTTTTAAAAACTTTTTCAGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGT
11651 GATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
324 GATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* **
11716 TGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAACAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
11781 AAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
11846 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGCCCCCCTCAATCG
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGCCCCCCTCAATCG
* * * **
11911 -CTGGAACCCCAATGCCGTCAGTTAGATTCTCCGGCGATGCTCTGGTGATGGTGCCCTGAGCGAA
583 TC-GGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCTG-GCGAA
* ** *
11975 AAAAAATGTGGCACCAGCACATGCCCGAGCCTAGGGTGTGCACTCACAACCCTCGGTCCGGTTCG
646 AAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCAC-CGCAACCCTCGGTCCGGTT-G
12040 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
709 ATCTTACACTGGGAATGAACTCCGTAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *
12105 CCACGAAACAAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGAC
773 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGAC
* * *
12170 CGGGTCCCCCCTACGTGCTG-CTGATCTTGCTACCACAGCCCTCAATCCAGTCCAAT
838 CGGGTCCCCCCTACGTGCTGTC-GATCTTGCTACCACAACCCTCGATCCGGTCCAAT
* *
12226 CTTAGACT-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGAGTGGGCAGGCACTA
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCACTA
* * * * *
12290 CGTCGGCTAGAGAGGCGGGATGCACAAGCCGCGTATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACA
* **
12355 TCTTCATATTTCTACCATGCCAATGCCATTTTTATATCTTGTAAATTCATACAATGGTCCCTTAA
131 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
12420 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTT
196 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * *
12485 TTCGGTTCAAGATTTTTTTAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
261 TACGGTTCAGGATTTTTTAAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
12550 TCTTTGTATTTTTATTGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAGGATTTTG
326 TCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
12615 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
391 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
12680 ATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATA
456 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
12744 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCGCCTCCCCAATTGT
521 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCC-CC-CCTCAATCGT
* * * *
12809 CGGAACCCCATTGTCGCCAGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCTGGC-AAAA
584 CGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTG-CCCTGGCGAAAA
* *
12873 AAAATGTGGCACCAGCACATGCCTGGGCCTAGCATGTGCACCCGTAACCCTCGGTCCGGTATGAT
648 AAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCA-CCGCAACCCTCGGTCCGGT-TGAT
*
12938 CATACACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
711 CTTACACTGGGAATGAACTCCGTA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * **
13003 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGGCAGGATGCGCAAGCCGGGGATCGATTG
775 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCG
* * * * *** * *
13068 GGTCCCCCCTATGTGCTGTCGATCCTACTGCTGTAACCCTCGGTCTGGTCCAAT
840 GGTCCCCCCTACGTGCTGTCGATCTTGCTACCACAACCCTCGATCCGGTCCAAT
* *
13122 CTTAGACTGGCAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GAGCAC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAG-GCAC
* * *
13186 TACGTCGGCCAGAGAGGCGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGCGAGTTTAGGCA
64 TACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCA
*
13251 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTT
129 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
13316 AAGCCTTCATGTTAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTGGAAACTT
194 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
** * *
13381 TTTACGGTTTGGGATTTTTTAAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
259 TTTACGGTTCAGGATTTTTTAAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
13446 GATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGTAGTGTACAGGATTT
324 GATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* *
13511 TGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTGCTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
13575 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCATTA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
13640 TAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCTCAATCTT
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCTCAATCGT
* * * * * * *
13705 CGGAACCCAAATGCTGCCGGTCAGGTTCTCCGGCGATGCT-TCAACGATGGTACCCCGGGTGAAA
584 CGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCT-GACGATGGT-GCCCTGGCGAAA
* * *
13769 AAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCTCCTGCAACCCTCGGT-C---TGA-
647 AAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCACC-GCAACCCTCGGTCCGGTTGAT
*
13829 -TT----T--G-AT---CT---TA-C----ACTGGGAATGAACTCCGTATGCCTAAGTCATCCCA
711 CTTACACTGGGAATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * ***
13875 CGAAATGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTTGG
776 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGG
* * * * * **
13940 GTCCCCCCTGA-GTGCTGGCGATCTTGCTATCGCAACCCTTGGTCCGGTCTGAT
841 GTCCCCCCT-ACGTGCTGTCGATCTTGCTACCACAACCCTCGATCCGGTCCAAT
* * * * * * * *
13993 CTTAGACTGGGAATGAATTGCGTATACCTAAGCCAACTGACAAAAGGAGCGAACGGGCGGGCACT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCACT
* * *
14058 ACGTCGACTAGAGAGGCGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
65 ACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCAC
* **
14123 ATCTTCATATTTTTGCCATGCCAATGCCATTTTTATTACTTGTAAATTCATACAATGGTCCCTTA
130 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * **
14188 AGCCTTCATGTGACGTTTCATTGCAAGACGACTCATTTTCTATTTTTCACGATTTTCCAAACTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* *
14253 TTACGGTTCAGGATTTTTTAAAAACTTTTTCAG-AGGAAGTTTTGGTCCCACACTTGGTAGACGT
260 TTACGGTTCAGGATTTTTTAAAAACTTTTTCAGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGT
* * * * * *
14317 GGTCCTTGTATTTTTGTTGGCATGTACAAAAAAATTTAGCTAAAAACTCGAGGTGTACAGGGTTT
324 GATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* * *
14382 TCTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * **
14447 AAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGGTA-GGGGATAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
14511 TAAGGGCCAAGTA
519 TAAGGGCCAAGTA
14524 TGTAAACCCG
Statistics
Matches: 2840, Mismatches: 294, Indels: 125
0.87 0.09 0.04
Matches are distributed among these distances:
870 88 0.03
871 661 0.23
872 388 0.14
873 95 0.03
874 1 0.00
875 1 0.00
876 1 0.00
877 2 0.00
879 1 0.00
880 2 0.00
882 1 0.00
883 2 0.00
884 1 0.00
886 2 0.00
887 1 0.00
888 1 0.00
890 3 0.00
892 4 0.00
895 5 0.00
896 374 0.13
897 603 0.21
898 459 0.16
899 139 0.05
900 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCACTA
CGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACA
TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCAGGATTTTTTAAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCTCAATCGTCG
GAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCTGGCGAAAAAAA
ATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCACCGCAACCCTCGGTCCGGTTGATCTTAC
ACTGGGAATGAACTCCGTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCC
CCCTACGTGCTGTCGATCTTGCTACCACAACCCTCGATCCGGTCCAAT
Found at i:13476 original size:898 final size:894
Alignment explanation
Indices: 11168--14523 Score: 4627
Period size: 897 Copynumber: 3.8 Consensus size: 894
11158 TCCGGTCTGA
* **
11168 TCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCACGGGCGCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
11233 CCGGCCTGAGGGGCAGGATGTGCAAGCCGGGGATCGA-CCGGTCCCCCCCTACGTGCTGTCAAT-
66 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGT-CCCCCCTACGTGCTGTCGATC
* * *** **
11296 TTGGCTACTACAACCCTTGATCTGGTATGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCC
130 TT-GCTACTACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
11361 AACTGATGAAACGAGCGGGCGGGCAGGCACTACGTCGACCAGAGAGGCGGCATGCGCAAGCCGTG
194 AACCGACGAAACGAGCGAGCGGGCAGGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTG
*
11426 GATCGATAGGGTGGTAGGTC-AGTTTAGGCACATCTTCATATTTCTGCCATGCTAATGCCATTTT
259 GATCGATAGGGTGGTAGG-CGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* *
11490 TATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGCGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * *
11555 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAG
388 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAACTTTTTCAG
* *
11620 AAGGA-TTTTAGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAA
453 AAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAA
*
11684 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
** *
11749 ACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
11814 CTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
647 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
11879 TGTGCGCACACCCCCCTCGCCCCCCTCAATCG-CTGGAACCCCAATGCCGTCAGTTAGATTCTCC
712 TGTGCGCACACCCCCC-CGCCCCCCTCAATTGTC-GGAACCCCAATG-CGCCAGTCAGGTTCTCC
* ** *
11943 GGCGATGCTCTGGTGATGGTG-CCCTGAGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCT
774 GGCGATGCTCCGACGATGGTGCCCCTG-GC-AAAAAAAATGTGGCACCAGCACATGCCTGAGCCT
** * *
12007 AGGGTGTGCACTCACAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTAT
837 AGCATGTGCACCCGCAACCCTCGGTCCGGTT-GATC-TACACTGGGAATGAACTCCGTAT
* * *
12067 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
12132 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCCTACGTGCTG-CTGATC
66 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTGTC-GATC
* * * *
12196 TTGCTACCACAGCCCTCAATCCAGTCCAATCTTAGACT--GAATGAACTCCGTATGCCTAAGCCA
130 TTGCTACTACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
12259 ACCGACGAAACGGGCGAGTGGGCAGGCACTACGTCGGCTAGAGAGGCGGGATGCACAAGCCGCGT
195 ACCGACGAAACGAGCGAGCGGGCAGGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGG
* * *
12324 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
260 ATCGATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
**
12389 TATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * *
12454 TTTTTTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCAAGATTTTTTTAAAACTTTTTCAGAA
390 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAACTTTTTCAGAA
* * *
12519 GGAGTTTTGGCCCCAAACTTGGTAGATGTGATCTTTGTATTTTTATTGGCATCCACAAAAAAATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
*
12584 CAGCTAAAAACTCGAAGTGTAAAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
12649 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTC
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
12713 AAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
650 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
12778 GCGCACACCCCCCCCCCGCCTCCCCAATTGTCGGAACCCCATTGTCGCCAGTCAGGTTCTCCAGC
715 GCGCACACCCCCCCGCC-CC-CCTCAATTGTCGGAACCCCAATG-CGCCAGTCAGGTTCTCCGGC
*
12843 GATGCTCCGACGATGGTGCCCCTGGCAAAAAAAATGTGGCACCAGCACATGCCTGGGCCTAGCAT
777 GATGCTCCGACGATGGTGCCCCTGGCAAAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCAT
*
12908 GTGCACCCGTAACCCTCGGTCCGGTATGATCATACACTGGGAATGAACTCCGTAT
842 GTGCACCCGCAACCCTCGGTCCGGT-TGATC-TACACTGGGAATGAACTCCGTAT
*
12963 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
13028 CCGGCCAAAAGGGCAGGATGCGCAAGCCGGGGATCGATTGGGTCCCCCCTATGTGCTGTCGATCC
66 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTGTCGATCT
* * ** * * * *
13093 TACTGCTGTAACCCTCGGTCTGGTCCAATCTTAGACTGGCAATGAACTCCGTACGCCTAAGCCAA
131 TGCTACTACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
13158 CCGACGAAACGAGCGGGCGGGC-GAGCACTACGTCGGCCAGAGAGGCGGGATGCACAAGTCGTGG
196 CCGACGAAACGAGCGAGCGGGCAG-GCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGG
13222 ATCGATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
260 ATCGATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* * *
13287 TGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTTG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* ** * *
13352 TTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTTTAGAA
390 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAACTTTTTCAGAA
* *
13417 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
*
13482 CAGCTAAAAACTCGTAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACA
520 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
13546 CTTTAAAGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-
585 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
13610 AGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGCCCAAGTACCAGCACCCATCGCACATCATG
650 A-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
13675 TGCGCACACCCCCCAGCCCCCCTCAATCT-TCGGAACCCAAATGCTGCCGGTCAGGTTCTCCGGC
714 TGCGCACACCCCCCCGCCCCCCTCAAT-TGTCGGAACCCCAATGC-GCCAGTCAGGTTCTCCGGC
* * * * * * *
13739 GATGCTTCAACGATGGTACCCCGGGTGAAAAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCA
777 GATGCTCCGACGATGGTGCCCCTGG-CAAAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCA
* *
13804 TGTGCTCCTGCAACCCTCGGT-C---TGAT-T----T--G-AT---CT---TA-
841 TGTGCACCCGCAACCCTCGGTCCGGTTGATCTACACTGGGAATGAACTCCGTAT
* * *
13839 -C----ACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGAGCATGCGGGCGCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
13899 CCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTTGGGTCCCCCCTGA-GTGCTGGCGATC
66 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCT-ACGTGCTGTCGATC
* * * ** * * *
13963 TTGCTA-TCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAATTGCGTATACCTAAGCC
130 TTGCTACT-ACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
14027 AACTGACAAAAGGAGCGAACGGGCGGGCACTACGTCGACTAGAGAGGCGGGATGCACAAGCTGTG
194 AACCGACGAAACGAGCGAGCGGGCAGGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTG
* * *
14092 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTT
259 GATCGATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
** * *
14157 ATTACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGACGTTTCATTGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* **
14222 ATTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTCAGGATTTTTTAAAAACTTTTTCAG-
389 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAACTTTTTCAGA
* * * * *
14286 AGGAAGTTTTGGTCCCACACTTGGTAGACGTGGTCCTTGTATTTTTGTTGGCATGTACAAAAAAA
454 AGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAA
* * * * *
14351 TTTAGCTAAAAACTCGAGGTGTACAGGGTTTTCTGACCATTTGAAAAAAGTCTCCCCATTTCAGA
518 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14416 CACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * **
14481 TCGAGGCTTGATGAGGGGTA-GGGGATAATATAAGGGCCAAGTA
648 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
14524 TGTAAACCCG
Statistics
Matches: 2202, Mismatches: 230, Indels: 78
0.88 0.09 0.03
Matches are distributed among these distances:
870 4 0.00
871 503 0.23
872 99 0.04
875 1 0.00
877 2 0.00
880 2 0.00
883 2 0.00
884 1 0.00
886 1 0.00
890 1 0.00
892 4 0.00
895 4 0.00
896 376 0.17
897 602 0.27
898 457 0.21
899 137 0.06
900 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTGTCGATCT
TGCTACTACAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGGCAGGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGA
TCGATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAACTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGCCCCCCTCAATTGTCGGAACCCCAATGCGCCAGTCAGGTTCTCCGGCGATG
CTCCGACGATGGTGCCCCTGGCAAAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGC
ACCCGCAACCCTCGGTCCGGTTGATCTACACTGGGAATGAACTCCGTAT
Found at i:15485 original size:26 final size:26
Alignment explanation
Indices: 15456--15508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15446 CCGGTCCGAT
15456 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
15482 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15508 C
1 C
15509 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:17237 original size:24 final size:26
Alignment explanation
Indices: 17216--17268 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17206 CCGTTCCGTT
*
17216 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
17242 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
17268 C
1 C
17269 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19055 original size:26 final size:26
Alignment explanation
Indices: 19004--19056 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18994 TTGGTTCGAC
*
19004 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTACATATG
* * *
19030 CTTAGACTGGGAATGAACTACGTATG
1 CTTACACTAGGAATGAACTACATATG
19056 C
1 C
19057 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTACATATG
Found at i:20321 original size:893 final size:881
Alignment explanation
Indices: 14551--21028 Score: 7206
Period size: 894 Copynumber: 7.3 Consensus size: 881
14541 CATTCCGGTT
** *
14551 CGATCTTACACTAAGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCA
1 CGATCTTACACTGGGAATGAACTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * * * *
14616 ACCCACGAAACGCA-CGTGCGCGCTTTCAGCCGGCCAGAGCGGTAGGATGCACAAGCTGGGGATC
65 ACCCACGAAACG-AGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGC-CGGGAT-
* * * * *
14680 GGTCGGGTCCCCCCTATGTGCTGCCAATCCTAATGCGA-CAACCCTC-AGTCCGGTCTTATCTTA
127 GGTCCGGT-CCCCCTA--TGCTGTCGAT-CT--TGCTATCAACCCTCGA-TCCGGTCTGATCTTA
* * * *
14743 GACTAGGAATGAACTTCGTATGCCTAAGCCGACCGACGAAACGAGCGGGCGAACGGGCGGGCACT
185 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-GG-G--CGGGCGGGCACT
** * * * *
14808 ACACCAGCCAGAGAGGCGGGATGCGCAAGTCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCAC
246 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
14873 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTA
311 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
14938 AGCCTTCATGTGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTTGAAAGTTT
376 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * *
15003 CTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAATGTGTTTTGG-CCCAAACTTGGTAGATGTG
441 TTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * *
15067 ATCCTTGTATGTTTTTTGGCATGCACAAGAAACTTCAGCTAAAAAGTCGAAGTGTAGAGGATTTT
506 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
15132 GAGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
571 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
15197 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCATTAT
636 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * *
15262 AAGGGCCAAGTACCAGCACCAATCGCACATCATTTGTGCAAACCCCACCTGGCCCCCAATTGTCG
701 AAGGGCCAAGTACCAGCACCCATCGCACATCA-GTGCGCACACCCC-CC-CGCCCCCAATT-ACG
* * * * * * *
15327 GAACCCCATTGTCGTCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAAGTGAAAAAA
762 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCC-GGCG-AAAAA
* * * * *
15392 AAATGCGACACCAGCACATGCCCGAGCCCAGCCTGTGCACTCATAACCCTCGGTCCGGTC
825 AAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACTC--AACCCTCGGT-TGGTC
*
15452 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
1 CGATCTTACACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15517 ACCTACGAAACGAGCGTGCGGGCGCTCAG-TCGACCAGAGGGGAAAGATGCGGAAGCCGGGGATC
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGCC-GGGAT-
* * * * ** * * *
15581 GAT-GGGTCCCAACCTGTG-TGCTACGAATCTGCGCCGT-AACCTTAG-T-CGATCTGATCATTA
127 GGTCCGGTCCC--CCTATGCTG-T-CG-ATCT-TGCTATCAACCCTCGATCCGGTCTGATC-TTA
* * * * *
15641 GACTGGGAATGAGCTCCGTATG-CTAAG-CAACCGAGGAAATGAGCGGGC-GTC-GGCACTAACG
185 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACT-ACG
** *
15702 T-GGCCAGAGAGGCGGGATGTACAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATC
249 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
15766 TTCATATTT-TGGCCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAAAGGTCCCCTATG
314 TTCATATTTCT-GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * * *
15830 CCTTCATGTGAAGTTTCAAGGTAAGTCAACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT
378 CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** * * *
15895 ACGGTTCATGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTACACATGAT
443 ATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
15960 CCTTGTATTTTTTTTGGCATTCACAAAAAAATTCAGGTAAAAACTCGAAGTGTATAGGATTTTGT
508 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* *
16025 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCTGCAAACCTGTAAAA
573 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
16090 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGAATAGGGGGCCAATATAA
638 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
16155 GGGCCAAATACCAGCACCCATTGCACATCATGTGCGCACACCCCACCCGCCCCCCAATTGCCGAA
703 GGGCCAAGTACCAGCACCCATCGCACATCA-GTGCGCACACCCC-CCCG-CCCCCAATT-ACGGA
* * * *
16220 ACCCCAATGCCGCCTGTCAGGTTTTCCGACGATGCTCCGATGATGGTGCCCCAGGCG-AAAAAAA
764 ACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCC-GGCGAAAAAAAA
** * **
16284 TGTGGCAACAGCACATGC-CTGAGCCCAGTGTGTGCACTCGTAA-CC-C------T-
828 TACGGCACCAGCACATGCTC-GAGCCCAGCATGTGCACTC--AACCCTCGGTTGGTC
* * *
16331 CGA---T-C-C---G-AT---C-CG-AT-CTTACACTGGGAATGAACTCCATATGCCTAACTCAA
1 CGATCTTACACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * * * * *
16381 CCCATGGAACGAGCGTACAGGTGCTCAGCTGGCTAGAGGGACAGGATGCACAAGTCGAGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCG-GGATGGT
* * * * * * ** *
16446 CCGGGTCTCCCCCTGTGTGCTGTTGATCCTACTGTCGCAACCCTCAATCCGGTCCAAGCTTAGAC
130 CC-GG--TCCCCC--TATGCTGTCGATCTTGCTAT--CAACCCTCGATCCGGTCTGATCTTAGAC
* * * * * * * *
16511 TGGGAATAAACTCCGTATGCCTAAGCCAACTAATGAAACGAGCGGACGGGTGGGCACTATGCCTG
188 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGTCGG
*
16576 CCAGAGAAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
253 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
16641 TATTTTTGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGTCTTC
318 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
16706 ATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTCTACGGT
383 ATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGT
* * *
16771 TCAGGATTTTTTTAAAA-TTTTTCAGATGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTG
448 TCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
16835 TATTTTTTTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGATGTGTACAGGATTTTGTGACCA
513 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* * * *
16900 TTTGAAAAAGGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAAGCTCA
578 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
16965 AATGCTCTTTAAGGGGGTTTGACTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCC
643 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * * **
17030 AAGTACTAGCACCCAACGCGCATCTTGTGCGCACA-CCCCCCGCCCTCCCCATTCGCTGGAACAT
708 AAGTACCAGCACCCATCGCACATC-AGTGCGCACACCCCCCCG-CC-CCCAATT-AC-GGAACCC
* * * * * ***
17094 CAATGCCACCGGTCAAGTTCTCCGACGATGCTTCGATGATGGTGCCCCAGGCGAAAAAAAATGTA
768 CAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCC-GGCGAAAAAAAATACG
* * * *
17159 GCACCAGCACATACTCGAGCCCAGCATGTTCACCTGCAACCCTCGGTCCGTTC
832 GCACCAGCACATGCTCGAGCCCAGCATGTGCA-CT-CAACCCTCGGT-TGGTC
* * *
17212 CGTTCTTACATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
1 CGATCTTACACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
17277 ACTCACGAAACGAGCATGCGGACACTCAGCCGGCCAGAGGGGAAAGGATGCGCAAGCCGGGGATC
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGG-CAGGATGCGCAAGCC-GGGAT-
* * * **
17342 GG-CTGGGTCCCCCCTACGTGCTG-CCATTCCTGCTACTGCAA-CCTCGATTTGGTCTGATCTTA
127 GGTC-CGGT-CCCCCTA--TGCTGTCGA-TCTTGCTA-T-CAACCCTCGATCCGGTCTGATCTTA
* * *
17404 GACTGAGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGC
185 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGT
* ** * ** * *
17469 CAGCCAGAGAGATGGGATGTGCAA-AAGTGGTTCGATAGGGTGGTAGGTCGGTTTAGGCACATCT
250 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * * *
17533 TCATATTTCTACCCTACCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCA
315 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
17598 TTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCAC-ATTTTTTGAAACTTTTT-
380 TTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTTTGAAACTTTTTA
* * * * * *
17661 TCGGTTCGAGATTTTTTGAAAATTTTTTTAGAAGGCGTTTTGGCCCCAAACATGGAAGACGTGAT
444 T-GGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
17726 CGTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTAGAAGTGTACAGGATTTTGT
508 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* *
17791 GACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAA
573 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
17856 CCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAA
638 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * * *
17921 GGGCAAAGTACTAGCACCCGTCACACATCATGTGCGTACACCCCCCCCCCCCCCCAATCGT-CGG
703 GGGCCAAGTACCAGCACCCATCGCACATCA-GTGCG--CACACCCCCCCGCCCCCAAT--TACGG
* * *
17985 AACCCCAATGTCGCCGGTCCA-ATTCTCCGACAATGCTCCGACGATGGTGCACCGGGCG-AAAAA
763 AACCCCAATGCCGCCGGT-CAGGTTCTCCGACAATGCTCCGACGATGGTGC-CCCGGCGAAAAAA
* * * * *
18048 AATGCGGCACCAGCACATGCTCAAGCCCAGCATGTGCACCTGTAACCTTCAGTTCGGTC
826 AATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCA-CT-CAACCCTCGGTT-GGTC
* * * **
18107 TGATCTT-CAATTGGGAATGAACTTCGTATGCTTAGACTGTGAATGAACTCTATATGCCTAAGTC
1 CGATCTTAC-ACTGGGAATGAAC-TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
18171 AACCCACGAAACAAGCGTGCGGGTGCTCAG-TCGGCCATAGGGGTAGGAT-CGTAAGCCGAAGAT
64 AACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGCCG-GGAT
* * * * * * *
18234 CGATCGGGTCCCCCTTACGTGCTGCCAATAC-TACTACCGCAACCCTCGGTCCGGTCTGATCTTA
127 -GGTCCGGTCCCCC-TA--TGCTGTCGAT-CTTGCTA--TCAACCCTCGATCCGGTCTGATCTTA
* **
18298 GACTAGGAATGAACTCCGTATGCCTAAGCCAA-TAGACGAAA-GAAAGGGCGGGCGGGCACTACG
185 GACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGGCGGGCGGGCACTACG
* *
18361 TCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATC
249 TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
18426 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
314 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * * * *
18491 CTTCATGTGAACTTTCATCGCAAGACAACTCCTTTTCTATTATTCATGATTCTTGAAACCTTTTA
379 CTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * **
18556 AGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGGGTTTTCACCCCAAACTTGGTAGACGTGATC
444 TGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
18621 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTATAGGATTTTGTG
509 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
*
18686 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
574 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
18751 CTCAAATGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
639 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * **
18816 GGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCCAC-CCCCCAATCATCAAAAC
704 GGCCAAGTACCAGCACCCATCGCACATCA-GTGCGCACACCCCCC-CGCCCCCAATTA-CGGAAC
* ** ** *
18880 CCCAATGCCGCTGGTCAGGTTCTCCGGTAATGCTCCGGTGATGGTGCCCCGGGCGAAAAAAGATA
766 CCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCCC-GGCGAAAAAAAATA
* * * * *
18945 TGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGAAACCCTCGGTTTGGTT
830 CGGCACCAGCACATGCTCGAGCCCAGCATGTGCACTC--AACCCTCGG-TTGGTC
* * * *
19000 CGACCTTACACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCA
1 CGATCTTACACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
19065 AACCACGAAACAAGCATGCGGGCGCTCAGCTGACCAGAGGGGCAGGATGCGTAAGTCGGGGATTG
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAG-CCGGGA-TG
* * * * * *
19130 GT-CGGATCCCCCTGCAT-CTTGTTGATCTTGCTGCTGTAACCCTAGGTCCGATCTGATCTTAGA
128 GTCCGG-TCCCCCT--ATGC-TGTCGATCTTGCT-AT-CAACCCTCGATCCGGTCTGATCTTAGA
* * * *
19193 TTGGGAATGAACTCCCTACGCCTAAGCCAACTGACGAAACGAGCGGGCGAGCGGGCACTACGTCG
187 CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGTCG
* * *
19258 GCCAGAGAGACGGGATGCGTAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
252 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
19323 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTT
317 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
19388 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGG
382 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGG
* * ** * *
19453 TTTGGGATTTTTTAAAAAAATTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGGTCCTT
447 TTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
19518 GTATTTTTCTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAAC
512 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG-AC
* * * *
19583 CATTTGAAAAAAGATGGTCCCCATTTCCAGACACTTTAATAGCTACTGACAGCAACCCTATAAAA
576 CATTTGAAAAAAG-T-GTCCCCATTT-CAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAA
*
19648 ATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGGATA-GTGGCCATATA
637 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GGATAGGGGGCCA-ATA
* * * * *
19711 TAAGGGCCAAGTGCGCCAGCATCCATTCGCCACATCA-TGCGTC-CACACCCCTGCCCTC-ATTA
700 TAAGGGCCAAGT--ACCAGCACCCA-TCG-CACATCAGTGCG-CACACCCCCCCGCCCCCAATTA
* * * * *
19773 CGAAACCCCAATGCCGTCGATGAGGTTCTCCGACAATGCTTCCGACGATGGTGCCCCAGCGAACA
760 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGC-TCCGACGATGGTGCCCCGGCGAA-A
* *
19838 AAAAATACGGGCACCAGCACATGCCCGAGCCCA-CATGTGCTCTCACACCCTCTGGTTGGTC
823 AAAAATAC-GGCACCAGCACATGCTCGAGCCCAGCATGTGCACTCA-ACCCTC-GGTTGGTC
19899 GCGATCTTTACACTGGGAATGAACTC-TAATGCTTAGACTGGGAAATGAACTCCGTATGCCTAAG
1 -CGATC-TTACACTGGGAATGAACTCGT-ATGCTTAGACTGGG-AATGAACTCCGTATGCCTAAG
* *
19963 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCAGGATGCACAAGCCAGGGA
62 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCC-GGGA
* *
20027 TGGTCCGGTCCCCCTATGCTGTCGAT-TTGCTATAAAACCTCGATCCGGTCTGATCTTAGA-TAG
126 TGGTCCGGTCCCCCTATGCTGTCGATCTTGCTATCAACCCTCGATCCGGTCTGATCTTAGACT-G
* * * * * *
20090 GGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGACCGGGCGAGC-GGCACTACGTCGGCC
190 GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCC
* * *
20154 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCTCATCTTAATA
255 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
20219 TTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
320 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
20284 GTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTATGGTTC
385 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTC
* *
20349 GGGATTTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGG-AGGACGTGATCCTTGT
450 GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTGT
* *
20413 ATTTTTATTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
514 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
*
20478 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAA
579 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
20543 ATTCTCTTTAAGGGGGTGTGAGTTCTTGAGCTTTGATGAGAGATAGGGGGCCAATATAAGGGCCA
644 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** *
20608 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCTGCCCCCCCAATCGCTGGAAGCC
709 AGTACCAGCACCCATCGCACATCA-GTGCGCACACCCCCC-C-G--CCCCCAATTAC-GGAACCC
* * * * * *
20673 CAATGTCGTCGGTCAGGTTCTCCGACAATGCTCTGACAATGGTGGCCCGGGCGAAAAAAAATGCG
768 CAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGT-GCCCCGGCGAAAAAAAATACG
* * ** * * * * ** *
20738 ACACTAGTTCATGGTCGAGCCCAACATGTGCACCCACAACCCTCAGTCCAGTT
832 GCACCAGCACATGCTCGAGCCCAGCATGTGCA--CTCAACCCTCGGT-TGGTC
* * *
20791 TGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGCAATGAACTCCGTATGCCTAAGTCA
1 CGATCTTACACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
20856 ACCCACGAAACGAGCCTGCGGGCGCTTAGCTAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCG
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAG-CCGGGAT-G
* * * ** *
20921 AT-CGAGTCCCCCCTGTG-TGCTACCGATCCTGCTGCCGTAACCCTC-AGTCCAGTCTGATCTTA
128 GTCCG-GT-CCCCCTATGCTG-T--CGATCTTGCTATC--AACCCTCGA-TCCGGTCTGATCTTA
* * *
20983 GACTGAGAATGAATTCCGTATGCCTAAGCCAAATGACGAAACGAGC
185 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC
21029 CTAGGGCAAA
Statistics
Matches: 4753, Mismatches: 637, Indels: 377
0.82 0.11 0.07
Matches are distributed among these distances:
862 1 0.00
863 79 0.02
864 10 0.00
865 3 0.00
866 14 0.00
867 27 0.01
868 18 0.00
869 26 0.01
870 308 0.06
871 234 0.05
872 6 0.00
873 2 0.00
874 1 0.00
875 1 0.00
876 1 0.00
879 3 0.00
880 2 0.00
881 2 0.00
884 8 0.00
885 5 0.00
886 20 0.00
887 1 0.00
888 38 0.01
889 110 0.02
890 321 0.07
891 384 0.08
892 147 0.03
893 607 0.13
894 882 0.19
895 338 0.07
896 409 0.09
897 123 0.03
898 174 0.04
899 119 0.03
900 91 0.02
901 227 0.05
902 5 0.00
903 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
CGATCTTACACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGATGGTC
CGGTCCCCCTATGCTGTCGATCTTGCTATCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATT
TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCAGTGCGCACACCCCCCCGCCCCCAATTACGGAACCCCAATGCCGCCGGT
CAGGTTCTCCGACAATGCTCCGACGATGGTGCCCCGGCGAAAAAAAATACGGCACCAGCACATGC
TCGAGCCCAGCATGTGCACTCAACCCTCGGTTGGTC
Found at i:21318 original size:312 final size:312
Alignment explanation
Indices: 20747--21340 Score: 874
Period size: 312 Copynumber: 1.9 Consensus size: 312
20737 GACACTAGTT
* *
20747 CATGGTCGAGCCCAACATGTGCACCCACAACCCTCAGTCCAGTTTGATCTTACACTGGGAATGAA
1 CATGCTCGAGCCCAACATGTGCACCCACAACCCTCAGTCCAGTCTGATCTTACACTGGGAATGAA
* *
20812 CTCCGTATGCTTAGATTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGG
66 CTCCGTATGCTTAGATAGGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCCTGCGG
*
20877 GCGCTTAGCTAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGAGTCCCCCCTGTGTGCT
131 GCGCTTAGCTAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGAGTCCCCCCTGCGTGCT
* * *
20942 ACCGATCCTGCTGCCGTAACCCTCAGTCCAGTCTGATCTTAGACTGAGAATGAATTCCGTATGCC
196 ACCGATCCTGCTGCCATAACCCTCAGTCCAGTATGATCTTAGACTGAGAATGAACTCCGTATGCC
21007 TAAGCCAAAT-GACGAAACGAGCCTAGGGCAAAAAGAAAATGGGGCACCAGCA
261 TAAGCC-AATCGACGAAACGAGCCTAGGGCAAAAAGAAAATGGGGCACCAGCA
* * * *
21059 CATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCAGT-CTGATCTGATCTTACGCTGGGAATGA
1 CATGCTCGAGCCCAACATGTGCACCCACAACCCTCAGTCCAG-TCTGATCTTACACTGGGAATGA
* * * *
21123 ACTTCGTATGCTTAGACTAGG-AATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC
65 ACTCCGTATGCTTAGA-TAGGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCCTGC
* * * * * *
21187 GGGTGCTTAG-TCGGCCATAGGGGTAGGATGTGCAAGTCGGGGATCGATCGGGTCCCCCCTGCGT
129 GGGCGCTTAGCT-AGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGAGTCCCCCCTGCGT
* * * *
21251 GCTGCCGATCCTGCTGCCATAACCCTC-GATCCGGTATGATCTTAGACTGGGAATGAACTCTGTA
193 GCTACCGATCCTGCTGCCATAACCCTCAG-TCCAGTATGATCTTAGACTGAGAATGAACTCCGTA
21315 TGCCTAAGCCAATCGACGAAACGAGC
257 TGCCTAAGCCAATCGACGAAACGAGC
21341 GGGCGGGCGG
Statistics
Matches: 251, Mismatches: 26, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
311 7 0.03
312 241 0.96
313 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (312 bp):
CATGCTCGAGCCCAACATGTGCACCCACAACCCTCAGTCCAGTCTGATCTTACACTGGGAATGAA
CTCCGTATGCTTAGATAGGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCCTGCGG
GCGCTTAGCTAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGAGTCCCCCCTGCGTGCT
ACCGATCCTGCTGCCATAACCCTCAGTCCAGTATGATCTTAGACTGAGAATGAACTCCGTATGCC
TAAGCCAATCGACGAAACGAGCCTAGGGCAAAAAGAAAATGGGGCACCAGCA
Found at i:22032 original size:26 final size:26
Alignment explanation
Indices: 22003--22055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21993 CTGGTCCGAT
*
22003 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
22029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
22055 C
1 C
22056 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22487 original size:26 final size:26
Alignment explanation
Indices: 22427--22490 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
22417 TTTTCTATTT
*
22427 TTCATGATTTTTGAAACTTTTTACGG
1 TTCAGGATTTTTGAAACTTTTTACGG
*
22453 -TCCGAGATTTTTGAAACTTTTTACGG
1 TTCAG-GATTTTTGAAACTTTTTACGG
22479 TTCAGGATTTTT
1 TTCAGGATTTTT
22491 TTAAAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 2 0.06
26 28 0.85
27 3 0.09
ACGTcount: A:0.22, C:0.12, G:0.17, T:0.48
Consensus pattern (26 bp):
TTCAGGATTTTTGAAACTTTTTACGG
Found at i:22953 original size:26 final size:26
Alignment explanation
Indices: 22924--22976 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22914 CTGGTTCGAT
* *
22924 CTTACACCGGGAATGAACTCTGTATG
1 CTTACACCGGGAATGAACACCGTATG
* *
22950 CTTAGACTGGGAATGAACACCGTATG
1 CTTACACCGGGAATGAACACCGTATG
22976 C
1 C
22977 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACCGGGAATGAACACCGTATG
Found at i:27218 original size:895 final size:892
Alignment explanation
Indices: 25061--35473 Score: 13610
Period size: 886 Copynumber: 11.8 Consensus size: 892
25051 CGATCTCAAT
* * *
25061 CTTACACTGGG-ATAGAACTGCCGTA-GCCCT-AGTCAACCCACGAAATGAGCGT-CGGGCACTC
1 CTTAGACTGGGAAT-GAACT-CCGTATG-CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * * ** *
25122 AGCCAGCCAAAGGGGTAAGATGCGCAAGCCAGGGATCGGTCGGGT-CCCCCTACATGTTATCGAT
63 AGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAAT
* * ** * * * * * *
25186 CCTTCTGCCGTAACCCTCAGTCTAGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTACGCT
128 CCTGCTGTCACAACCCTCGGTCT-GGTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
25251 AACCGACAAAATGAGCGGGCGGGCGGCCATTACGCCGGCCAGAGAGGCGGGATGCGTAAGCTGTG
192 AACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * **
25316 GATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTACCGCGCCAATGCCATTTTT
257 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
*
25381 ATGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * *
25446 GTTTTCTATTTTTCACAATTTTTGAAACTTTTTACAGTTTGGGATTATTTTAAAATTTTTTCAGA
387 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGA
25511 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
25576 TTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
25641 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * **
25706 CGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGTGCATCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * **
25771 TGCACACACCCCCCTCGCACCCCTAATCGTCGAAACCCCAATACCGTCAGTCAGGTTCTCCGGTG
712 TGCGCACA-CCCCC-CGC-CCCC-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * * *
25836 ATGCTCCGACGATGGTGCCCCGGGAGAAAAAAAATGTC-GCACTAGCACATG-CTCGAGCCTAGC
773 ATGCTCCGATGATGGTGCCCCGGCA-AAAAAAAATG-CGGCACCAGCACCTGCCT-GAGCCCAGC
*
25899 ATGTGCAACTGCAAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
835 ATGTGCACCTGC-AACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* ***
25958 TTTAGACTGGGAATGAACTTTTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
26023 CGGCCAAAGAGGCAGGATGCACAAGCCGGGGATCGG-CTGGGTCCCCCCCTGCATGTTGCCGATC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTC-GGGT-CCCCCCTGCGTGCTGCCAATC
* * * * *
26087 TTGCTATCATAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCCA
129 CTGCTGTCACAACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
26152 ACCGACGAAACGAGCGGGCGGGTGGGCACTACACCGGCTAGAGAGGCGGGATGTGTAAACCGTGG
193 ACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
26217 ATCAATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTGCCATGCCAATGCCATTTTTA
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
** *
26282 TCTCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * **
26347 TTTTCTTTTTTTCACGA-TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTTTGAA
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* * *
26411 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCATAAAACAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * *
26476 CAGCTCAAAACTCGAAGTGTACAAGATTTTTTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
26541 CTTTAATGGCTAC-GGCAGCAAACCTGTAAAATCTCAAACGCACTTTAAGAGGGTGTGAGTTCTT
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
26605 GAGGTTTGAATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGAACCCCATCGCACATCAT
648 GAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACATCAT
** * * *
26669 GTGCGCACACCCCTTGCCCCCATATCGTCGGAACACCAATGCCGTCGGTCAGGTTCTCCGATGAC
711 GTGCGCACACCCCCCGCCCCCA-ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * *
26734 GCTCCGATGATGGTGCCCCTGGCAAAAAAAAAAATGCGGCAGCAGCACCTTCCTGAG-CCAGAAT
775 GCTCCGATGATGGTGCCCC-GGC--AAAAAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCAT
* * *
26798 GTGCACCTACAACCCTCGGTCTGGTCTGATTTTACACTGGGAATGAACTCCATATG
837 GTGCACCTGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* * *
26854 GTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
26919 TGAG-CAGAGGGGCAGGATGCGCAAGCTGGGGATCAGTCAGGTCCCCCCTGTGTGCTACCAATCC
66 CG-GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAATCC
** * * * *
26983 TGCTGTCACAACCCTCTATCCGGTCTATTCTTAGACTAGGAATTAACTCCATATGCCTAAGCCAA
130 TGCTGTCACAACCCTCGGTCTGGTCTA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
27048 CCGACGAAATGAGCGGGCGAGCGGGCACTACACCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGA
194 CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * * * *
27113 TCGATAGGGTGGTAGATGGGTTTACGAACATATTCATATTTCTACCATGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * *
27178 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGCAGTTTCATGGCAAGACAATTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
27243 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAAATTTTTTGAAAAG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* *
27308 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * ** *
27373 AGCTAAAAACTCAAAGTGCACAGGATTTTGTGACCAATTGAAAAAAGTGTCCTTATTTTAGACAC
519 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
27438 TTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
27503 AGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCACATATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * *
27568 CGCACACCACCCGCCCGCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCT
714 CGCACACCCCCCGCCC-CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * * *
27633 TCGATGATGGTGCGCCGAGCAAAACAAAATGCGGCACCAGCACATGCTTGAGTCCAGCATGTGCA
778 CCGATGATGGTGCCCCG-GCAAAAAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGTGCA
* *
27698 CCTGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
842 CCTGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* *
27749 CTTAGACTGGGAATGAACTCCGTATGCCT-AGTCAAACCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
27813 CGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGTTGGGTCACCCCCTGTGTGCCACCAATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTC-CCCCCTGCGTGCTGCCAATCC
* * * * *
27878 TGCTGCCACAACCTTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTGTCACAACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
27943 CCCG-TGAAACGAGCGGACGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGTAAACCGTGG
194 -CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
28007 ATCAATAGGGTAGTAGGTGGGTTTCA-GCACATCTTCATATTTTTGCCATGCCAATGCCATTTTT
258 ATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
28071 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG-TTCGTGGCAGGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
28135 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
387 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGA
*
28200 AGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
28264 TCAGCT-AAAACTCGAAGTGTACAGGTTTTTGTGACCATCTTG-AAAAAGTGTCCCCATTTCAAA
517 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT-TTGAAAAAAGTGTCCCCATTTCAGA
* *
28327 CACTTTAATGGCTACTGG-AGC-AACCTGTCAAATCTCAAATTCTCTTTAAGGGGGTGGTGAGTT
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTT
*
28390 CT-GAAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTAGCAGCAACCCATTCGCACA
645 CTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCA-TCGCACA
* * * *
28453 TCATGTGCGCA-A--CACC-CCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGC
707 TCATGTGCGCACACCCCCCGCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * * *
28514 GATGCTCCAACGATGGTGCCTCGGGCGAAAAAAAATGCGGCACCAGCACATG-CTCGAGCCTAGC
772 GATGCTCCGATGATGGTGCC-CCGGCAAAAAAAAATGCGGCACCAGCACCTGCCT-GAGCCCAGC
** *** *
28578 ATGTGCACCTGCAACACC-CAATCCAAT-TCGATCTTACATTGGGAATGAACTCCGTATG
835 ATGTGCACCTGCAAC-CCTCGGTCTGGTCT-GATCTTACACTGGGAATGAACTCCGTATG
* * * * *
28636 CTTAGACTGGGAATGAACTTCGTATGTCTAAGT-AATCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
28700 CGACCAGAGGGGCAGGATGTGCAAGCTGGGGATCGGTTGGGTCCCCCCTGCATGCTGCCAATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAATCCT
* * * * *
28765 GCTGCCATAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGTCACAACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** * *
28830 CGACGAAACGAGCGGACGGGCGAGCAATACGCTTGCCAGAGAGACGGGATGCGCAAGCCGTAGAT
195 CGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
28895 CGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
*
28960 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT-----G--GACTTGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
29018 TTCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGTA-ATGTTTTAAAAAATTTTTCAGAAG
390 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-AGATTTTTTTAAAATTTTTTCAGAAG
* **
29082 AAGTTTTGGGTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * * *
29147 AG-TTAAAACTCGAAGTGCACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCTATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * * * *
29211 TTTTATGACTGCGGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
29276 AGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCACACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * * **
29341 CGCACACCCCCTGCCCCCCAATCACCGGAACCACAATGCCGTCGGTCAGGTTCTCTGGTGATGCT
714 CGCACACCCCCCG-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * * * * *
29406 CCAACGATGGTGCCCTGAGC-GAAAAAAATGCGGCACCAGCACTTGCCCGAGTCCAGCATGTGGA
778 CCGATGATGGTGCCCCG-GCAAAAAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGTGCA
* * * *
29470 -CTCGTAACCCTTGGTCCGGTCTGATCTTACATTGGGAATGAACTCCGTATG
842 CCT-GCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* * *
29521 CTTAGACTGGGAATGAACTCCGTATGGCT-AGTCAAACCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
29585 CGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGGTTGGGTCACCCCCTGCGTGCCACCAGTCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTC-CCCCCTGCGTGCTGCCAATCC
** * * * * *
29650 TGCTACCGCAACCCTCGATCTAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTGTCACAACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
29715 CCCG-TGAAATGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCCAGCCGTGG
194 -CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * * *
29779 ATCGATAGGGTAGTAGGTGGGTTTTGACACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* * * *
29844 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTCGTAGGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
29909 TTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTATTCAGAT
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* *
29974 GGAGTTTT-GCCCCTAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
453 GGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
30038 TCAACTAAAAACTCGAAGTGTACAGGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
30103 ATTTTAATTGCTACTGGCAGGAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
30168 TGAGGTTTGATAAGGGATAGGGTGCCAATATAAGGGCCAAGTAGCAACACCCATCGCACATCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
30233 TGCGCACACCCCCCCGACCCTCAATTGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAACGAT
712 TGCGCACA-CCCCCCG-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-
* ** * * *
30298 GCTCCGGTAATGGTGCTCCGGTGATGGTGCCCCGGGTGAAAAAAAATACGGCACCAACACTTG-C
771 ----C-G--A---TGCTCCGATGATGGTGCCCC-GGCAAAAAAAAATGCGGCACCAGCACCTGCC
* * ** * *
30362 TCGAGGCCAGCATGTGCACTTGCAACCCTCAAT-TCGATCCGATCTTACACTGGGAATGAACTCC
825 T-GAGCCCAGCATGTGCACCTGCAACCCTCGGTCT-GGTCTGATCTTACACTGGGAATGAACTCC
30426 GTATG
888 GTATG
* * * *
30431 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACTGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * ** *
30496 CGACCAGAGGGAAAGGATGCACAATCCGAGGATCAATCGAGTCCCCCCT--G-G--G----T-CT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAATCCT
* * **
30551 G--G---------T---TC--G---ATCTCAGATTGGGAATGAACTTTGTATGCCTAAGCCAACC
131 GCTGTCACAACCCTCGGTCTGGTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
30597 GACGAAATGAGTGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATC
196 GACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
*
30662 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGG
261 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
*
30727 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTT
326 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
30792 TCTATTTTTCACGAATTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAAAAGGA
391 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
* * *
30857 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAG
456 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
30922 CTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCACTATTTCAGACACTT
521 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
30987 TAATGG-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
586 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
31051 GTTTGATGATGGATTAGGGGG-CAATATAAGGGGCCAAGTACCAGCA-CCATCGCACATCATGTG
651 GTTTGATGAGGGA-TAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
31114 CGCACCACCACCCTCGCCTACCAATCG-CTGGAAACCCCAATGCCGTCGGTCAGG---T------
714 CGCA-CACC-CCC-CGCC-CCCAATCGTC-GG-AACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * *
31169 -T-CTCCG-TGATGGTGCCTCGAGTGAAAAAAAAATACGGCACCAAGCACACTGCCCGAGCCCAG
773 ATGCTCCGATGATGGTGCCCCG-G-CAAAAAAAAATGCGGCACC-AGCAC-CTGCCTGAGCCCAG
* * * * **
31231 CATGTGCACCCCGTAA-CCTCGGTCCGGTCTGA-CTTACACTAGGAATGAACTAAGTATG
834 CATGTGCA-CCTGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* ** * * * *
31289 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAATGCATGAAAGGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
31354 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCATGCCTGCATGCTGCCAATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCC-CCCCTGCGTGCTGCCAATCC
** * * * * ** *
31419 TGCTGTTGCAACCATCAGTCTGATCCAATCTTAGACTGGGAATGAACTTTGAATGCCTAAGCCAA
130 TGCTGTCACAACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** ** * * * *
31484 CCGACGAAATGAGTAGGCCAGCAGGCACTATGCCGACCAGAGAGACGGGATGCGCAAG-CGATGG
194 CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG-TGG
* *
31548 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* * * * *
31613 TGGCTTGTAAATTCAAACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATAGCAGGACGACTCA
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
*
31678 TTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGA-TTTTTTAAAACTTTTTTCAG
388 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAA-TTTTTTCAG
* *
31741 AAGGAGTTTTGGCCCCACACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
31806 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
31871 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
31936 TTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
32000 GTGCGCACACCCCCCGCCCCCAATCGTCGGAACCCCAATGCCGT--GTCAGGTTCT-CGACGATG
711 GTGCGCACACCCCCCGCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
** * * *
32062 CT-CGGCGATGGTG-CCGGGCAAAAAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGC
776 CTCCGATGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGTGC
* *
32124 A-C--CAACCCTCGGTCCGGTCCGATCTTACACT-GGAATGAACTCC-TATG
841 ACCTGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* *
32171 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
32235 CGGCCAGAGGTGCAGGATGCGTAAGCCAGGGATCGATCGGGT-CCCCCTGCTTGCTGCCGATCTT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAATCCT
** * * *
32299 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAAC
131 GCTGTCACAACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** *
32364 CGATTAAATGAACGGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGGCGGGATGCGCAAGCCGT
195 CGACGAAATG-A---GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
*
32429 GGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
256 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* * *
32494 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCATCTTGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * *
32559 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTTGGGATTTTTTTAAAATTTTTTCAG
386 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAG
* * * *
32624 AAGGAGTTTTGGTCCCACACTTGGTAGACATGATCCTTGTCTTTTTGTTGGCATGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
32689 TTCAGCTAAAAACTCAAAGTGTACAGGAGTTTGTGATCATTTGAAAAAAATGTCCCCATTTTAGA
516 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
32754 CACTTTAATGGCTACTGGCAGCAAACTTTGTAAAAATCTCAAATGCTCTATAAGGGGGTGTGAGT
581 CACTTTAATGGCTACTGGCAGCAAAC-CTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
32819 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-C-GCACCCATCGCACATC
644 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
32882 ATGTGCGCACACCCCCC-CCCCCAATCGT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
709 ATGTGCGCACACCCCCCGCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* *
32945 TGCTCCG-TGATGGTGCCCCGG--AAAAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGT
774 TGCTCCGATGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGT
*
33006 GCACCTGCAACCCTCGGTC--GTCCGATCTTACACTGGGAATGAACTCCGTATG
839 GCACCTGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
33058 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
33122 CGGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGATC-GGT-CCCCTTGCGTGCT---AATCCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAATCCT
* * * *
33181 G-TGT-GCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGTCACAACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
33244 CGACGAAACGAGC-GGC-GGCGGGCACTACGCC-G--AGAGAGGC-GGATGCGCAAGCCGTGGAT
195 CGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
33303 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT-TGCCATGCCAATGCCATTTTTATG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
33366 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
33431 TT-TATTTTTCAC-ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT-AGAAGG
390 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
*
33493 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
33558 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
33623 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
33687 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*
33752 GCACACCCCCCCCCCCCAATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCC
715 GCACACCCCCCGCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* * * *
33816 GGTGATGGTGCCCCAGGC-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
780 GATGATGGTGCCCC-GGCAAAAAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGTGCACC
33880 --CAACCCTCGGTCT-G---G----T---CT--G-AT---CT---TA--
844 TGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
*
33905 C----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGG-GCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
33965 CGGCCAGAGGGGCAGGATGCACAAGCC-GGGATCGGTCGGGTCCCCCTCTGC-TGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCC-CTGCGTGCTGCCAATCC
* *
34028 TGC--T-AGCAACCCTC-GTCCGGTCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGTCA-CAACCCTCGGTCTGGTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
34088 CCGACGAAATGA----GC-GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
194 CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
34148 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
34213 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* *
34278 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAA-TTTTTCAGAAG
389 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* * *
34341 GAGTTTTGGACCCAAACTT-GTAGACATGATCCTTATA-TTTTGTTGGCATGCACAAAAAAAATT
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATT
*
34404 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAAACA
518 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
34468 CTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-AGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
** * *
34532 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACACATTGCACATCATGT
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
34597 G-TCACACCCCCCACCCCCCAATCGCCGGAACACCAATGCCGTCGGTTAGGTTCTCCGACGATGC
713 GCGCACACCCCCC-GCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * * * * **
34661 TCC-AGCGATGGTGCGCCGGGCGAGAAAAAATGCGGCACCAGTACAAG-CTCGAGCCCAGCATGT
777 TCCGA-TGATGGTGC-CCCGGCAAAAAAAAATGCGGCACCAGCACCTGCCT-GAGCCCAGCATGT
** ** ** * *
34724 GCACCCACAACCCTTAGTCTAAT-TCGATCTTACACTGGGAATGAACTTCATATG
839 GCACCTGCAACCCTCGGTCTGGTCT-GATCTTACACTGGGAATGAACTCCGTATG
* * *
34778 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * **
34843 CGGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTTGCATG-TGCTGAT-CT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAATCCT
*
34905 AC-G---CAACCCTC-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGTCACAACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
34965 CGACGAAACGAGCGGACGGGCGGGCACTACGCC-GCCAGAGAGGC-GGATGCGCAAGCCGTGGAT
195 CGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
35028 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
35093 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
35158 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
390 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
35223 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
35288 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
35352 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
35417 GGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACAT
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
35474 TGTCGTAACG
Statistics
Matches: 8451, Mismatches: 797, Indels: 551
0.86 0.08 0.06
Matches are distributed among these distances:
842 17 0.00
843 89 0.01
844 6 0.00
845 54 0.01
846 79 0.01
847 182 0.02
848 229 0.03
849 85 0.01
850 26 0.00
851 11 0.00
852 2 0.00
855 4 0.00
856 13 0.00
857 22 0.00
858 122 0.01
859 31 0.00
860 5 0.00
861 1 0.00
862 60 0.01
863 21 0.00
864 38 0.00
865 190 0.02
866 68 0.01
867 23 0.00
868 119 0.01
869 23 0.00
870 55 0.01
871 11 0.00
873 2 0.00
874 29 0.00
875 13 0.00
876 43 0.01
877 59 0.01
878 52 0.01
879 368 0.04
880 585 0.07
881 218 0.03
882 328 0.04
883 490 0.06
884 117 0.01
885 300 0.04
886 611 0.07
887 335 0.04
888 52 0.01
889 437 0.05
890 114 0.01
891 55 0.01
892 90 0.01
893 170 0.02
894 364 0.04
895 608 0.07
896 466 0.06
897 141 0.02
898 154 0.02
899 211 0.02
900 257 0.03
901 1 0.00
904 1 0.00
906 1 0.00
907 1 0.00
908 1 0.00
909 18 0.00
910 110 0.01
911 63 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCCAATCCT
GCTGTCACAACCCTCGGTCTGGTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
ATGATGGTGCCCCGGCAAAAAAAAATGCGGCACCAGCACCTGCCTGAGCCCAGCATGTGCACCTG
CAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATG
Found at i:27752 original size:26 final size:26
Alignment explanation
Indices: 27723--27775 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27713 CTGGTCCGAT
27723 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
27749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
27775 C
1 C
27776 CTAGTCAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:29524 original size:26 final size:26
Alignment explanation
Indices: 29495--29546 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
29485 CCGGTCTGAT
*
29495 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
29521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
29547 GCTAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:30316 original size:14 final size:14
Alignment explanation
Indices: 30297--30332 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
30287 TCTCCAACGA
30297 TGCTCCGGTAATGG
1 TGCTCCGGTAATGG
*
30311 TGCTCCGGTGATGG
1 TGCTCCGGTAATGG
*
30325 TGCCCCGG
1 TGCTCCGG
30333 GTGAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.08, C:0.28, G:0.39, T:0.25
Consensus pattern (14 bp):
TGCTCCGGTAATGG
Found at i:30434 original size:26 final size:26
Alignment explanation
Indices: 30405--30457 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30395 TCGATCCGAT
30405 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
30431 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
30457 C
1 C
30458 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31301 original size:26 final size:26
Alignment explanation
Indices: 31263--31315 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31253 TCCGGTCTGA
31263 CTTACACTAGGAATGAACTAAGTATG
1 CTTACACTAGGAATGAACTAAGTATG
* * *
31289 CTTAGACTGGGAATGAACTCAGTATG
1 CTTACACTAGGAATGAACTAAGTATG
31315 C
1 C
31316 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTAAGTATG
Found at i:32179 original size:24 final size:26
Alignment explanation
Indices: 32147--32197 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
32137 CCGGTCCGAT
32147 CTTACACT-GGAATGAACTCC-TATG
1 CTTACACTGGGAATGAACTCCGTATG
*
32171 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
32197 C
1 C
32198 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 12 0.50
26 5 0.21
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:33061 original size:26 final size:26
Alignment explanation
Indices: 33032--33084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33022 GTCGTCCGAT
33032 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
33058 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
33084 C
1 C
33085 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:34803 original size:26 final size:26
Alignment explanation
Indices: 34752--34804 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34742 CTAATTCGAT
*
34752 CTTACACTGGGAATGAACTTCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
34778 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
34804 C
1 C
34805 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:36457 original size:17 final size:16
Alignment explanation
Indices: 36437--36490 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
36427 TTTTTAGGAC
*
36437 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
36454 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
36471 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
36488 TTT
1 TTT
36491 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:37869 original size:14 final size:13
Alignment explanation
Indices: 37850--37890 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
37840 TTTTTTTTGC
37850 TATTTTTTTGTAT
1 TATTTTTTTGTAT
*
37863 TATTTTTTGGTATT
1 TATTTTTTTGTA-T
*
37877 TATTTTTTTTTAT
1 TATTTTTTTGTAT
37890 T
1 T
37891 TCGTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (13 bp):
TATTTTTTTGTAT
Found at i:37891 original size:14 final size:14
Alignment explanation
Indices: 37850--37891 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
37840 TTTTTTTTGC
37850 TATTTTTTTGTA-T
1 TATTTTTTTGTATT
*
37863 TATTTTTTGGTATT
1 TATTTTTTTGTATT
*
37877 TATTTTTTTTTATT
1 TATTTTTTTGTATT
37891 T
1 T
37892 CGTATAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (14 bp):
TATTTTTTTGTATT
Found at i:38225 original size:87 final size:88
Alignment explanation
Indices: 38078--38301 Score: 333
Period size: 88 Copynumber: 2.5 Consensus size: 88
38068 AAAAATAATA
* * * *
38078 AATCGATCGAGATAACACACGCGAATCAAAATTATGCCCGGAGGTCTTACAGAATAGACTGGGAT
1 AATCGATCGGGATAACAC-CGCGAATCGAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGAT
*
38143 AACATCG-CAGTCAAAAGATAAAG
65 AACATCGTAAGTCAAAAGATAAAG
* *
38166 AATCGATCGGGATAACACCGCGAATCGAAATTATGTCCGAAGGTCTTACAAAATCGACTGGGATA
1 AATCGATCGGGATAACACCGCGAATCGAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGATA
*
38231 ACATCGTAAGTCAAAAGATAAGG
66 ACATCGTAAGTCAAAAGATAAAG
* * *
38254 AATCGATCGGGATAACACCGCGAATCGAAATTACGCTCGGAGGTCTTA
1 AATCGATCGGGATAACACCGCGAATCGAAATTATGCCCGAAGGTCTTA
38302 AGAATCATAC
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 48 0.39
88 75 0.61
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (88 bp):
AATCGATCGGGATAACACCGCGAATCGAAATTATGCCCGAAGGTCTTACAAAATAGACTGGGATA
ACATCGTAAGTCAAAAGATAAAG
Found at i:38320 original size:22 final size:23
Alignment explanation
Indices: 38291--38353 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
38281 AAATTACGCT
38291 CGGAGGTCTTA-AGAATCATACC
1 CGGAGGTCTTACAGAATCATACC
* * *
38313 TGGAGGTCTTATAGAATCATGCC
1 CGGAGGTCTTACAGAATCATACC
38336 CGGAGGTCTTACAGAATC
1 CGGAGGTCTTACAGAATC
38354 GACTGGAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 10 0.28
23 26 0.72
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (23 bp):
CGGAGGTCTTACAGAATCATACC
Found at i:38442 original size:22 final size:22
Alignment explanation
Indices: 38411--38477 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
38401 ACACCGAATC
*
38411 GAAATTATGCCCGGAGGTCTTA
1 GAAATCATGCCCGGAGGTCTTA
* *
38433 GAAATCATGCTCGAAGGTCTTA
1 GAAATCATGCCCGGAGGTCTTA
*
38455 CAGAATCATGCCCGGAGGTCTTA
1 GA-AATCATGCCCGGAGGTCTTA
38478 CAGAATTGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
22 20 0.53
23 18 0.47
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (22 bp):
GAAATCATGCCCGGAGGTCTTA
Found at i:38465 original size:23 final size:23
Alignment explanation
Indices: 38417--38483 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
38407 AATCGAAATT
* *
38417 ATGCCCGGAGGTCTTAGA-AATC
1 ATGCCCGAAGGTCTTACAGAATC
*
38439 ATGCTCGAAGGTCTTACAGAATC
1 ATGCCCGAAGGTCTTACAGAATC
*
38462 ATGCCCGGAGGTCTTACAGAAT
1 ATGCCCGAAGGTCTTACAGAAT
38484 TGACTCGGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 15 0.38
23 24 0.62
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (23 bp):
ATGCCCGAAGGTCTTACAGAATC
Found at i:38477 original size:131 final size:128
Alignment explanation
Indices: 38206--38570 Score: 455
Period size: 131 Copynumber: 2.8 Consensus size: 128
38196 TTATGTCCGA
*
38206 AGGTCTTACAAAATCGACTGGGATAACATCGTAAGTCAAAAGATAAGGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTC-AAAGATAAGGAATCGATCGGGATAACA
* * * *
38271 CCGCGAATCGAAATTACGCTCGGAGGTCTTAAGAATCATACCTGGAGGTCTTATAGAATCATGCC
64 -C-CGAATCGAAATTATGCCCGGAGGTCTTAA-AATCATACCTGAAGGTCTTACAGAATCATGCC
38336 CGG
126 CGG
*
38339 AGGTCTTACAGAATCGACTGGAATAAAATCGTAAGTCGAAAGATAAGGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACTGG-ATAACATCGTAAGTC-AAAGATAAGGAATCGATCGGGATAACA
*
38404 CCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCAT-GCTCGAAGGTCTTACAGAATCATGCCC
64 CCGAATCGAAATTATGCCCGGAGGTCTTA-AAATCATACCT-GAAGGTCTTACAGAATCATGCCC
38468 GG
127 GG
* * * ** *
38470 AGGTCTTACAGAATTGACTCGGGTAACATCGCAAGTCAGAA-ATAAAAAATCGATCGGGACAACA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTCA-AAGATAAGGAATCGATCGGGATAACA
**
38534 CCGTAAATCGAAATTATGCCTAGAGGTCTTACAAATC
64 CCG--AATCGAAATTATGCCCGGAGGTCTTA-AAATC
38571 TCAAAATCTT
Statistics
Matches: 207, Mismatches: 18, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
130 26 0.13
131 87 0.42
132 35 0.17
133 59 0.29
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (128 bp):
AGGTCTTACAGAATCGACTGGATAACATCGTAAGTCAAAGATAAGGAATCGATCGGGATAACACC
GAATCGAAATTATGCCCGGAGGTCTTAAAATCATACCTGAAGGTCTTACAGAATCATGCCCGG
Found at i:39302 original size:33 final size:33
Alignment explanation
Indices: 39233--39510 Score: 313
Period size: 33 Copynumber: 8.5 Consensus size: 33
39223 TTGGGGCTAA
*
39233 ATAAACTTGGCTTAAAT-TT-ATTGAAGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAAGGCCAG
*
39264 CTAAACTGGGCTTAAATCTTCATTTGAA-GCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGGCCAG
* * * * *
39297 ATAAACTAGGTTTAAAACCTCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAAGGCCAG
* *
39330 ATGAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA-GGCCAG
39363 ATAAACTGGGCTTAAAGT-TTCATTG-AGAGCCAG
1 ATAAACTGGGCTTAAA-TCTTCATTGAAG-GCCAG
*
39396 ATAAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA-GGCCAG
* * *
39429 ATAAACTAGGCTTAAAT-ATCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAAGGCCAG
*
39461 ATAAACTGGGCTTAAAACTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA-GGCCAG
39494 ATAAACTGGGCTTAAAT
1 ATAAACTGGGCTTAAAT
39511 TTTATTTTAT
Statistics
Matches: 207, Mismatches: 26, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
31 15 0.07
32 35 0.17
33 151 0.73
34 6 0.03
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (33 bp):
ATAAACTGGGCTTAAATCTTCATTGAAGGCCAG
Found at i:39519 original size:5 final size:5
Alignment explanation
Indices: 39509--39538 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
39499 CTGGGCTTAA
39509 ATTTT ATTTT ATTTT ATTTT ATTTT -TTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
39539 GAATTTGGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:40796 original size:15 final size:15
Alignment explanation
Indices: 40776--40807 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
40766 TCATAACCAA
40776 TTTTTTCTTCTTTTTT
1 TTTTTTC-TCTTTTTT
40792 TTTTTTCTCTTTTTT
1 TTTTTTCTCTTTTTT
40807 T
1 T
40808 GTTGTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTCTCTTTTTT
Found at i:47266 original size:17 final size:16
Alignment explanation
Indices: 47246--47299 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
47236 TTTTTAGGAC
*
47246 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
47263 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
47280 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
47297 TTT
1 TTT
47300 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:48677 original size:11 final size:10
Alignment explanation
Indices: 48656--48693 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
48646 ATTATTTTTC
48656 TTTTTTT-TA
1 TTTTTTTGTA
48665 TTTTTTTGCTA
1 TTTTTTTG-TA
48676 TTTTTTTGTA
1 TTTTTTTGTA
48686 TTATTTTT
1 TT-TTTTT
48694 TGGTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 7 0.27
10 4 0.15
11 15 0.58
ACGTcount: A:0.11, C:0.03, G:0.05, T:0.82
Consensus pattern (10 bp):
TTTTTTTGTA
Found at i:48693 original size:14 final size:13
Alignment explanation
Indices: 48662--48715 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
48652 TTTCTTTTTT
48662 TTATTTTTTTG--
1 TTATTTTTTTGTA
*
48673 CTATTTTTTTGTA
1 TTATTTTTTTGTA
*
48686 TTATTTTTTGGTA
1 TTATTTTTTTGTA
48699 TTTATTTTTTTTGTA
1 -TTA-TTTTTTTGTA
48714 TT
1 TT
48716 TCGTATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 10 0.29
13 11 0.31
14 5 0.14
15 9 0.26
ACGTcount: A:0.13, C:0.02, G:0.09, T:0.76
Consensus pattern (13 bp):
TTATTTTTTTGTA
Found at i:48707 original size:15 final size:14
Alignment explanation
Indices: 48674--48716 Score: 61
Period size: 15 Copynumber: 3.1 Consensus size: 14
48664 ATTTTTTTGC
48674 TATTTTTTTGTA-T
1 TATTTTTTTGTATT
*
48687 TATTTTTTGGTATT
1 TATTTTTTTGTATT
48701 TATTTTTTTTGTATT
1 TA-TTTTTTTGTATT
48716 T
1 T
48717 CGTATAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 11 0.42
14 3 0.12
15 12 0.46
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (14 bp):
TATTTTTTTGTATT
Found at i:48954 original size:26 final size:26
Alignment explanation
Indices: 48925--48977 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
48915 CCAGTCCGAT
48925 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
48951 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
48977 C
1 C
48978 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:50732 original size:26 final size:26
Alignment explanation
Indices: 50693--50745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
50683 CCAATCTGAT
*
50693 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
* *
50719 CTTAGACTGAGAATGAACTCTGTATG
1 CTTACACTGAGAATGAACTCCGTATG
50745 C
1 C
50746 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:51372 original size:892 final size:890
Alignment explanation
Indices: 48764--52477 Score: 5182
Period size: 884 Copynumber: 4.2 Consensus size: 890
48754 GATGTCAACA
* *
48764 CACATCATGT--GCACACCCCCGCCCCTTCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
1 CACATCATGTGCGCACACCCCCGCCCC-CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
48827 CCGACGATGC-TCGACGATGGTGCCC--GGC-AAAAAAAAATGTGGCACCAGCACATGCCCGAGC
65 CCGACGATGCTTCGGCGATGGTTCCCTGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGC
* *
48888 CCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCT
130 CTAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCT
* * * * *
48953 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCAG-ACGGGCACTCAACC
195 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCAGGCGCTCAGCC
* * ** **
49017 TGCCAGAGGGGC-AGATGCACAAGTC-GGGATCGGTCGGGTCCCCCCTGTGTGCTGCCGATCCTG
259 AGCCAGAGGGGCAAGATGCACAAGCCAGGGATCGACCGGGTCCCCCCTACGTGCTGCCGATCCTG
* * * * *
49080 CTACCACAACCCTCGATCTTATCGATCTTAGACTAGGAAAGAACTCCGTATGCCTAAGCCAAACG
324 CTACCACAACCCTCG-TCGT-CCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
49145 ACGAAACGAGCGACGAGGCGGGCACTACACGCCGGCCAGAGAGGC-GGATGCAAAGTCGTGGATC
387 ACGAAACGAGCGGCG-GGCGGGCACT--ACGCCGGCCAGAGAGGCGGGATGCAAAGCCGTGGATC
*
49209 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGG
449 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
49274 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
514 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
49339 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAA-TTTTTCAGAAGGA
579 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
49402 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
644 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
49467 CTAAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
709 CT-AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
49532 TTAATGGCTACT-GCAGCAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-
773 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AG
49594 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
837 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
49648 CACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
1 CACATCATGTGCGCACA--CCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * *
49713 TCCGGCGATGCTCCGGTGATGGTGCCCCGGGTG--AAAAAAATGTGGCACCAGCACATGCCCGAG
64 TCCGACGATGCTTCGGCGATGGTTCCCTGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAG
* * * *
49776 CCCAGCATGTGCACCC-CAACCCTC-GT-CTGATCCGATCTT-CA-T-GGTATGAACTCCGAATG
129 CCTAGCATGTGCACCCACAACCCTCGGTCCAG-TCCGATCTTACACTGGGAATGAACTCCGTATG
*
49835 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGCGCTCAG
193 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-AGGCGCTCAG
* * ** * *
49900 CCGGCCAGAGGGG-TAGCATGCACAAGCCAGGGATCGACCGGGTCCCCCCTTTGTGCTACTGATC
257 CCAGCCAGAGGGGCAAG-ATGCACAAGCCAGGGATCGACCGGGTCCCCCCTACGTGCTGCCGATC
*
49964 CTGCTA-C-C-A-CC-C-T-GT---ATGCTTAGACTGGGAATGAACAT-CGTATGCCTAAGCCAA
321 CTGCTACCACAACCCTCGTCGTCCAAT-CTTAGACTAGGAATGAAC-TCCGTATGCCTAAGCCAA
* * *** ** * * *
50018 CCGACGAAACGAGTGGGCTGGCCAACACTACGCCGATCATAGAGGCGGGATGCGCAAGCCATGGA
384 CCGACGAAACGAG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC-AAAGCCGTGGA
* * * *
50083 TCAATAGGGTGGTATGTGGTTTTAGTCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
447 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
50148 GGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTC-T
512 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
50212 TCTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAAATTTTTT-AGA
577 T-TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAAATTTTTTCAGA
50276 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
640 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
50341 TCAGCTAAAAACTCGAAGTGTACA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
705 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
50405 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
770 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
50470 AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCGGCACCCATTG
835 AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
50526 CACATCATGTGCGCACACCCCCTGCCCCCTAATCGTCGAAACCCCAATGCCACCGGTTAGCTTCT
1 CACATCATGTGCGCACACCCCC-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** *
50591 CCGATGATGCTTCGGCAATGGTTCCCTGGGCGAAAAAAAAATACGGCACCAGCACATGCCTGAGC
65 CCGACGATGCTTCGGCGATGGTTCCCTGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGC
** * *
50656 CTAGCATGTGCACCCACAACCCTCAATCCAATCTGATCTTACACTGGGAATGAACTCCGTATGCT
130 CTAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCT
* * * *
50721 TAGACTGAGAATGAACTCTGTATGCCGAAGTCAACCCACGAAGCGAGCGTGCAGGCGCTCAGCCA
195 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCA
* * *
50786 ACCAGAGGGGCAAGATGCGCAAGCCAGGGATCGACCGGGTCCCCGCCTACGTGCTGCCGATCCTC
260 GCCAGAGGGGCAAGATGCACAAGCCAGGGATCGACCGGGTCCCC-CCTACGTGCTGCCGATCCTG
* *
50851 CTATCACAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
324 CTACCACAACCCTC-G-TC-GTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
*
50916 GACGAAAC-AG-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
386 GACGAAACGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGC-AAAGCCGTGGATCG
50979 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
450 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
51044 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
515 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
51109 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAG
580 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
51173 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGC
645 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
51237 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
710 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
51302 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
775 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGG
51367 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
840 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
51418 CACATCATGTGCGCACA----C-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTC
1 CACATCATGTGCGCACACCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * ** *
51478 CGACGATGCTCCGACGATGG-TAACTCGGGCG--AAAAAAATGTGGCACCAGCACTTGCCCGAGC
66 CGACGATGCTTCGGCGATGGTTCCCT-GGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGC
* * * *
51540 CTAGCATGTGCACCCACAACCCTCGGTCTAGTCCGATGTTACTCTGGGAATGAACTCCGTACGCT
130 CTAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCT
* * * *
51605 TAGACTGGGAATGAACTCCATATGCCTAAGTCGACCCACGAAACGAGCGTGCAGGTGCTAAGCCA
195 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCA
* * * * **
51670 GCCAGAGCGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACGTGCTGCCGATCCTGC
260 GCCAGAGGGGCAAGATGCACAAGCCAGGGATCGACCGGGTCCCCCCTACGTGCTGCCGATCCTGC
* * * * *
51735 TGCCGCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAGGCCAACTG
325 TACCACAACCCTC-GTC-G-TCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
51800 ACGAAATGAGTGGACGGGCAGGCATTACACCGGCCAGAAAGGCGGGATGCAAATGCCGTGGATCG
387 ACGAAACGAGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCAAA-GCCGTGGATCG
* * * *
51865 ATAAGGTGGTAGGTGGGTTGAGG--------CATA--TCT----T---TAT---A-TTTCA--GC
450 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
* * *
51907 TTGTAAATTCATACAATGGTCCCTTATGCCTCCATGTGAAGTTTCATGGCAAGACGACTTGTTTT
515 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
51972 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAG
580 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
*
52037 TTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAG
645 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAG
* * * * *
52102 CTAAAAACTCGTAGGGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAGACACTT
709 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
52167 TAATGGCCACTGGCAGCAAACTTGTAAAATCTCGAAA-GCTCTTTAAGGGGGTGTGAGTTCTAGA
774 TAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTAGA
* *
52231 GGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTG
838 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
52284 CACATCATGTGCGCACTCCCCCTGCCCCCCAATCGCCGGAACCCCAATGTCGTCGGTCAGCTCCT
1 CACATCATGTGCGCACACCCCC-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * *
52349 CCGATGATGCTTCGGCAATGGTTCCCTGGGCGAAAAAAAAATACGACACCAGCACATGCCTGAGC
65 CCGACGATGCTTCGGCGATGGTTCCCTGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGC
* * * *
52414 CTAGCATGTGCACCAACAACCCTCGATCCAGTCTGATCTTACACTAGGAATGAACTCCGTATGC
130 CTAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGC
52478 CTAAGCCAAC
Statistics
Matches: 2551, Mismatches: 206, Indels: 156
0.88 0.07 0.05
Matches are distributed among these distances:
863 101 0.04
864 58 0.02
865 4 0.00
866 213 0.08
867 3 0.00
869 2 0.00
870 1 0.00
872 58 0.02
873 3 0.00
874 96 0.04
875 10 0.00
876 283 0.11
877 97 0.04
878 190 0.07
879 48 0.02
880 9 0.00
881 9 0.00
882 7 0.00
883 132 0.05
884 340 0.13
885 32 0.01
886 142 0.06
887 92 0.04
888 33 0.01
889 47 0.02
890 2 0.00
891 58 0.02
892 224 0.09
893 204 0.08
894 4 0.00
895 3 0.00
896 44 0.02
897 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
CACATCATGTGCGCACACCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
CGACGATGCTTCGGCGATGGTTCCCTGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGCC
TAGCATGTGCACCCACAACCCTCGGTCCAGTCCGATCTTACACTGGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAG
CCAGAGGGGCAAGATGCACAAGCCAGGGATCGACCGGGTCCCCCCTACGTGCTGCCGATCCTGCT
ACCACAACCCTCGTCGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCAAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
Found at i:54940 original size:26 final size:26
Alignment explanation
Indices: 54911--54963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
54901 CCAGTCCGAT
54911 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
54937 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
54963 C
1 C
54964 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:57579 original size:26 final size:26
Alignment explanation
Indices: 57543--57595 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
57533 CTGGTCTGAT
* *
57543 CTTACACTGGGATTGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
57569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
57595 C
1 C
57596 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:59294 original size:24 final size:25
Alignment explanation
Indices: 59262--59311 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
59252 CCGGTTTGAT
*
59262 CTTACACT-GGAATGAACTCGTATG
1 CTTACACTGGGAATAAACTCGTATG
*
59286 CTTAGACTGGGAATAAACTCGTATG
1 CTTACACTGGGAATAAACTCGTATG
59311 C
1 C
59312 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
CTTACACTGGGAATAAACTCGTATG
Done.