Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 121 of 121
Found at i:21086027 original size:116 final size:116
Alignment explanation
Indices: 21085837--21086114 Score: 330
Period size: 116 Copynumber: 2.4 Consensus size: 116
21085827 TGGTTAAATG
* * * * **
21085837 AGCTTTTGGAATTTAAAGTTTGTTGCCTTTGGTTA-AAGGAG-CTTTTGAATTTAAAGTTTGTTG
1 AGCTTTTTGAATTTAAAGTTTGTTACCTCTGATTAGAA-GAGCCTTTTGAATTTAAAGTCCGTTG
* **
21085900 CCTTTGGTTAAAGGAGC-TTTCGGATTTAAAGTTGGTTACCTCTAGTGAGAGA
65 CCTTTGGTTAAAGGAGCATTT-GAATTTAAAGTTCATTACCTCTAGTGAGAGA
* * *
21085952 AGCTTTTTTAATTTAAAGTTTGTTACCTCTGATGAGATGAGCCTTTTGAATTTAAAGTCCGTTGC
1 AGCTTTTTGAATTTAAAGTTTGTTACCTCTGATTAGAAGAGCCTTTTGAATTTAAAGTCCGTTGC
** * *
21086017 CTTTGGTTAAAGGAGCATTTGAATTTAAAGTTCATTGTCTCTGGTTAGAGA
66 CTTTGGTTAAAGGAGCATTTGAATTTAAAGTTCATTACCTCTAGTGAGAGA
* *
21086068 AGCCTTTTGAATTTAAAGTTT-TATAGCCTCTGTTTAGAAGAGCCTTT
1 AGCTTTTTGAATTTAAAGTTTGT-TA-CCTCTGATTAGAAGAGCCTTT
21086115 CAAATTTTCT
Statistics
Matches: 137, Mismatches: 21, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
115 33 0.24
116 83 0.61
117 21 0.15
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (116 bp):
AGCTTTTTGAATTTAAAGTTTGTTACCTCTGATTAGAAGAGCCTTTTGAATTTAAAGTCCGTTGC
CTTTGGTTAAAGGAGCATTTGAATTTAAAGTTCATTACCTCTAGTGAGAGA
Found at i:21086121 original size:40 final size:39
Alignment explanation
Indices: 21086038--21086121 Score: 89
Period size: 40 Copynumber: 2.1 Consensus size: 39
21086028 GGAGCATTTG
* * **
21086038 AATTTAAAGTTCATTGTCTCTGGTTAGAGAAGCCTTTTG
1 AATTTAAAGTTCATAGCCTCTGGTTAGAGAAGCCTTTCA
* *
21086077 AATTTAAAGTTTTATAGCCTCTGTTTAGA-AGAGCCTTTCA
1 AATTTAAAG-TTCATAGCCTCTGGTTAGAGA-AGCCTTTCA
21086117 AATTT
1 AATTT
21086122 TCTTTCAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
39 10 0.27
40 27 0.73
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.42
Consensus pattern (39 bp):
AATTTAAAGTTCATAGCCTCTGGTTAGAGAAGCCTTTCA
Found at i:21087149 original size:12 final size:12
Alignment explanation
Indices: 21087132--21087185 Score: 63
Period size: 12 Copynumber: 4.4 Consensus size: 12
21087122 GTTTCGTAGG
*
21087132 TTTTTCCTTTTC
1 TTTTTCCTTTTA
*
21087144 TTTTTCTTTTTA
1 TTTTTCCTTTTA
*
21087156 TTTTTCGTTTTGA
1 TTTTTCCTTTT-A
*
21087169 TTTTTACTTTTA
1 TTTTTCCTTTTA
21087181 TTTTT
1 TTTTT
21087186 TATGTTGATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
12 26 0.72
13 10 0.28
ACGTcount: A:0.07, C:0.11, G:0.04, T:0.78
Consensus pattern (12 bp):
TTTTTCCTTTTA
Found at i:21087193 original size:25 final size:24
Alignment explanation
Indices: 21087151--21087213 Score: 81
Period size: 25 Copynumber: 2.6 Consensus size: 24
21087141 TTCTTTTTCT
** *
21087151 TTTTATTTTTCGTTTTGATTTTTA
1 TTTTATTTTTTATGTTGATTTTTA
21087175 CTTTTATTTTTTATGTTGATTTTTA
1 -TTTTATTTTTTATGTTGATTTTTA
*
21087200 TGTTATTTTTTATG
1 TTTTATTTTTTATG
21087214 ATGCTATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 13 0.38
25 21 0.62
ACGTcount: A:0.14, C:0.03, G:0.10, T:0.73
Consensus pattern (24 bp):
TTTTATTTTTTATGTTGATTTTTA
Found at i:21087210 original size:12 final size:12
Alignment explanation
Indices: 21087178--21087213 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
21087168 ATTTTTACTT
21087178 TTATTTTTTATG
1 TTATTTTTTATG
21087190 TTGA-TTTTTATG
1 TT-ATTTTTTATG
21087202 TTATTTTTTATG
1 TTATTTTTTATG
21087214 ATGCTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.05
12 20 0.91
13 1 0.05
ACGTcount: A:0.17, C:0.00, G:0.11, T:0.72
Consensus pattern (12 bp):
TTATTTTTTATG
Found at i:21088547 original size:34 final size:34
Alignment explanation
Indices: 21088508--21088618 Score: 102
Period size: 34 Copynumber: 3.3 Consensus size: 34
21088498 CTTTAGATTC
* *
21088508 GCAAGAACTTCAAATTTGTAAGAGCTTCAAGTTCT
1 GCAAGAA-TTTAAATTTGTAAGAACTTCAAGTTCT
** *
21088543 -CAAGAATTTTAGGTTCGTAAGAACTTCAAGTT-T
1 GCAAGAA-TTTAAATTTGTAAGAACTTCAAGTTCT
* *
21088576 GCAAGAATTTAAAGTTTATAAGAATTTCAAGTTC-
1 GCAAGAATTTAAA-TTTGTAAGAACTTCAAGTTCT
*
21088610 GAAAGAATT
1 GCAAGAATT
21088619 CAACTTCATC
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
33 5 0.08
34 56 0.92
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (34 bp):
GCAAGAATTTAAATTTGTAAGAACTTCAAGTTCT
Found at i:21088581 original size:17 final size:17
Alignment explanation
Indices: 21088508--21088621 Score: 70
Period size: 17 Copynumber: 6.8 Consensus size: 17
21088498 CTTTAGATTC
*
21088508 GCAAGAACTTCAAATTT
1 GCAAGAACTTCAAGTTT
* *
21088525 GTAAGAGCTTCAAGTTCT
1 GCAAGAACTTCAAGTT-T
* * * *
21088543 -CAAGAATTTTAGGTTC
1 GCAAGAACTTCAAGTTT
*
21088559 GTAAGAACTTCAAGTTT
1 GCAAGAACTTCAAGTTT
* *
21088576 GCAAGAATTTAAAGTTT
1 GCAAGAACTTCAAGTTT
** * *
21088593 ATAAGAATTTCAAGTTC
1 GCAAGAACTTCAAGTTT
*
21088610 GAAAGAA-TTCAA
1 GCAAGAACTTCAA
21088622 CTTCATCATT
Statistics
Matches: 72, Mismatches: 23, Indels: 5
0.72 0.23 0.05
Matches are distributed among these distances:
16 5 0.07
17 66 0.92
18 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (17 bp):
GCAAGAACTTCAAGTTT
Found at i:21088591 original size:51 final size:51
Alignment explanation
Indices: 21088484--21088621 Score: 127
Period size: 51 Copynumber: 2.7 Consensus size: 51
21088474 GCAAGGAACT
* * * * * * *
21088484 AAGTTTCACAATAACTTTAGATTCGCAAGAACTTCAAATTTGTAAGAGCTTC
1 AAGTTT-ACAAGAATTTTAGGTTCGAAAGAACTTCAAATTTGCAAGAACTTA
* * *
21088536 AAGTTCT-CAAGAATTTTAGGTTCGTAAGAACTTCAAGTTTGCAAGAATTTA
1 AAGTT-TACAAGAATTTTAGGTTCGAAAGAACTTCAAATTTGCAAGAACTTA
* * *
21088587 AAGTTTATAAGAATTTCAAGTTCGAAAGAA-TTCAA
1 AAGTTTACAAGAATTTTAGGTTCGAAAGAACTTCAA
21088622 CTTCATCATT
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
50 6 0.08
51 59 0.83
52 5 0.07
53 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (51 bp):
AAGTTTACAAGAATTTTAGGTTCGAAAGAACTTCAAATTTGCAAGAACTTA
Found at i:21092855 original size:24 final size:22
Alignment explanation
Indices: 21092812--21092872 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
21092802 AAATATATTT
*
21092812 AAAAAAT-AATAAATAATTAATC
1 AAAAAATAAATAAA-AATTAAAC
21092834 AAATAAATAAATAAAAAGTTAAAC
1 AAA-AAATAAATAAAAA-TTAAAC
*
21092858 AAACAA-AAATAAAAA
1 AAAAAATAAATAAAAA
21092873 AATACTACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 12 0.35
23 8 0.24
24 14 0.41
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.20
Consensus pattern (22 bp):
AAAAAATAAATAAAAATTAAAC
Found at i:21093588 original size:26 final size:26
Alignment explanation
Indices: 21093554--21093608 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
21093544 ATTCCTATGA
21093554 AACAAATATAACT-CAAAAACATAGAC
1 AACAAATATAA-TGCAAAAACATAGAC
21093580 AACAAATATAATGCAAAAACATAGAC
1 AACAAATATAATGCAAAAACATAGAC
21093606 AAC
1 AAC
21093609 CATTGAGTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.62, C:0.18, G:0.05, T:0.15
Consensus pattern (26 bp):
AACAAATATAATGCAAAAACATAGAC
Found at i:21093771 original size:43 final size:43
Alignment explanation
Indices: 21093702--21093947 Score: 212
Period size: 43 Copynumber: 5.7 Consensus size: 43
21093692 ACAAATTAAA
21093702 CTCCTCTATATAGAGGC-AAACAAATTTAAATTAAGAAATTGG
1 CTCCTCTATATAGAGGCTAAACAAATTTAAATTAAGAAATTGG
* * *
21093744 CTCCTCTATATAGAGGCTAAATAAATTTAAACTAGGAAATTGG
1 CTCCTCTATATAGAGGCTAAACAAATTTAAATTAAGAAATTGG
** * * ** * *
21093787 CTTATCTAT-TCAGAGGCAAAACAATTTTAAAACAGGAAATGGG
1 CTCCTCTATAT-AGAGGCTAAACAAATTTAAATTAAGAAATTGG
* *
21093830 CTCCTCAATATAGAGGCTAAACAACTTTAAAATTAAGAAA-TGAG
1 CTCCTCTATATAGAGGCTAAACAAATTT-AAATTAAGAAATTG-G
* * * * * *
21093874 CTCTTTTATACAGAGACTAAACAACTTTAAATTAAGAAA-CGG
1 CTCCTCTATATAGAGGCTAAACAAATTTAAATTAAGAAATTGG
* * * * *
21093916 ATTCCTCTATACAAAGGTTAAACAACTTTAAA
1 -CTCCTCTATATAGAGGCTAAACAAATTTAAA
21093948 AACTTTAAAT
Statistics
Matches: 166, Mismatches: 32, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
42 19 0.11
43 114 0.69
44 33 0.20
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (43 bp):
CTCCTCTATATAGAGGCTAAACAAATTTAAATTAAGAAATTGG
Found at i:21093939 original size:130 final size:128
Alignment explanation
Indices: 21093702--21093948 Score: 282
Period size: 130 Copynumber: 1.9 Consensus size: 128
21093692 ACAAATTAAA
* * * *
21093702 CTCCTCTATATAGAGGCAAACAAATTTAAATTAAGAAATTGGCTCCTCTATATAGAGGCTAAATA
1 CTCCTCAATATAGAGGCAAACAAATTTAAATTAAGAAATTGGCTCCTCTATACAGAGACTAAACA
* * * * * *
21093767 AATTTAAACTAGGAAATTGGCTTATCTATTCAGAGGCAAAACAATTTTAAAACAGGAAATGGG
66 AATTTAAACTAAGAAATCGGATTATCTATACAAAGGCAAAACAACTTTAAAACAGGAAATGGG
* * *
21093830 CTCCTCAATATAGAGGCTAAACAACTTTAAAATTAAGAAA-TGAGCTCTTTTATACAGAGACTAA
1 CTCCTCAATATAGAGGC-AAACAAATTT-AAATTAAGAAATTG-GCTCCTCTATACAGAGACTAA
* * * **
21093894 ACAACTTTAAATTAAGAAA-CGGATTCCTCTATACAAAGGTTAAACAACTTTAAAA
63 ACAAATTTAAACTAAGAAATCGGATT-ATCTATACAAAGGCAAAACAACTTTAAAA
21093949 ACTTTAAATA
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
128 16 0.16
129 15 0.15
130 66 0.68
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (128 bp):
CTCCTCAATATAGAGGCAAACAAATTTAAATTAAGAAATTGGCTCCTCTATACAGAGACTAAACA
AATTTAAACTAAGAAATCGGATTATCTATACAAAGGCAAAACAACTTTAAAACAGGAAATGGG
Found at i:21094247 original size:34 final size:34
Alignment explanation
Indices: 21094209--21094303 Score: 84
Period size: 34 Copynumber: 2.8 Consensus size: 34
21094199 GTTTGTAAAT
*
21094209 GATTCAAAATTC-TCAAAGGTTCCAGATTCACAAA
1 GATTCAAAATTCGT-AAAGATTCCAGATTCACAAA
** * *
21094243 GATTCAAGTTTCGTAGAGATTCCAGATTTACAAA
1 GATTCAAAATTCGTAAAGATTCCAGATTCACAAA
** * *
21094277 GATTTCAAGTTTCATAGAGATTCCAGA
1 GA-TTCAAAATTCGTAAAGATTCCAGA
21094304 GTCGTAAAGG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
34 29 0.55
35 24 0.45
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.31
Consensus pattern (34 bp):
GATTCAAAATTCGTAAAGATTCCAGATTCACAAA
Found at i:21094295 original size:35 final size:34
Alignment explanation
Indices: 21094228--21094303 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 34
21094218 TTCTCAAAGG
*
21094228 TTCCAGATTCACAAAGATTCAAGTTTCGTAGAGA
1 TTCCAGATTCACAAAGATTCAAGTTTCATAGAGA
*
21094262 TTCCAGATTTACAAAGATTTCAAGTTTCATAGAGA
1 TTCCAGATTCACAAAGA-TTCAAGTTTCATAGAGA
21094297 TTCCAGA
1 TTCCAGA
21094304 GTCGTAAAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 16 0.41
35 23 0.59
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (34 bp):
TTCCAGATTCACAAAGATTCAAGTTTCATAGAGA
Found at i:21094318 original size:35 final size:35
Alignment explanation
Indices: 21094228--21094331 Score: 115
Period size: 35 Copynumber: 3.1 Consensus size: 35
21094218 TTCTCAAAGG
* *
21094228 TTCCAGATTCACAAAGA-TTCAAGTTTCGTAGAGA
1 TTCCAGAGTCACAAAGATTTCAAGTTTCATAGAGA
* *
21094262 TTCCAGATTTACAAAGATTTCAAGTTTCATAGAGA
1 TTCCAGAGTCACAAAGATTTCAAGTTTCATAGAGA
** * *
21094297 TTCCAGAGTCGTAAAGGTTTC-AGATTCATA-AGA
1 TTCCAGAGTCACAAAGATTTCAAGTTTCATAGAGA
21094330 TT
1 TT
21094332 TTTTCAAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
33 5 0.08
34 24 0.39
35 32 0.52
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (35 bp):
TTCCAGAGTCACAAAGATTTCAAGTTTCATAGAGA
Found at i:21094961 original size:15 final size:15
Alignment explanation
Indices: 21094924--21094971 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
21094914 AAAATTTTCT
21094924 AGAGAGAAA-AAGAG
1 AGAGAGAAAGAAGAG
*
21094938 AGAAAAGAAAGAAGAG
1 AG-AGAGAAAGAAGAG
*
21094954 AGAGAGAAAGAAGGG
1 AGAGAGAAAGAAGAG
21094969 AGA
1 AGA
21094972 AATCTGAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
14 2 0.07
15 20 0.69
16 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (15 bp):
AGAGAGAAAGAAGAG
Found at i:21095245 original size:13 final size:13
Alignment explanation
Indices: 21095229--21095253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21095219 TCTTTTTGGT
21095229 ATTTTTTTAATTA
1 ATTTTTTTAATTA
21095242 ATTTTTTTAATT
1 ATTTTTTTAATT
21095254 TTTTTCTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTTTTAATTA
Found at i:21095536 original size:9 final size:8
Alignment explanation
Indices: 21095499--21095534 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
21095489 TTCAAACCAA
21095499 AAAAAT-T
1 AAAAATAT
21095506 AAAAATAT
1 AAAAATAT
*
21095514 AAAAACAT
1 AAAAATAT
21095522 AAAAATAT
1 AAAAATAT
21095530 AAAAA
1 AAAAA
21095535 ATTTTGGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (8 bp):
AAAAATAT
Found at i:21104188 original size:15 final size:15
Alignment explanation
Indices: 21104168--21104200 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
21104158 CAGAAGTAGA
21104168 GATCCCATCCTTGAG
1 GATCCCATCCTTGAG
*
21104183 GATCCCATCTTTGAG
1 GATCCCATCCTTGAG
21104198 GAT
1 GAT
21104201 TCTAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.30
Consensus pattern (15 bp):
GATCCCATCCTTGAG
Found at i:21105648 original size:43 final size:42
Alignment explanation
Indices: 21105572--21105660 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 42
21105562 GAGTGTCAAA
21105572 GAGCAATTTATTTTTTCAAAGTTCTGTTGCCTCTATTTAGAG
1 GAGCAATTTATTTTTTCAAAGTTCTGTTGCCTCTATTTAGAG
21105614 GAGCAATTTATTTTTCTCAAAG-TC-GTTGAGCCTCTATTTAGAG
1 GAGCAATTTATTTTT-TCAAAGTTCTGTT--GCCTCTATTTAGAG
21105657 GAGC
1 GAGC
21105661 TTTGTTTACT
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
41 3 0.07
42 17 0.39
43 24 0.55
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (42 bp):
GAGCAATTTATTTTTTCAAAGTTCTGTTGCCTCTATTTAGAG
Found at i:21106872 original size:8 final size:9
Alignment explanation
Indices: 21106851--21106892 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
21106841 TTTTCAAACC
21106851 AAAAAATAT
1 AAAAAATAT
21106860 AAAAAATAT
1 AAAAAATAT
*
21106869 AAAAAACAT
1 AAAAAATAT
21106878 -AAAAATAT
1 AAAAAATAT
21106886 AAAAAAT
1 AAAAAAT
21106893 TTTAGAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAAATAT
Found at i:21106881 original size:17 final size:18
Alignment explanation
Indices: 21106851--21106891 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
21106841 TTTTCAAACC
*
21106851 AAAAAATATAAAAAATAT
1 AAAAAACATAAAAAATAT
21106869 AAAAAACAT-AAAAATAT
1 AAAAAACATAAAAAATAT
21106886 AAAAAA
1 AAAAAA
21106892 TTTTAGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAAACATAAAAAATAT
Found at i:21107317 original size:56 final size:57
Alignment explanation
Indices: 21107257--21107365 Score: 134
Period size: 56 Copynumber: 1.9 Consensus size: 57
21107247 AAAAAGAAGA
* * *
21107257 ATTTCTACA-TAGGCCCAAATTGTGGAAA-ATTTAGAAAT-TTTTGAAAAAAAAAATAT
1 ATTTCTA-ATTAGGCCCAAATGGT-GAAATAATTAGAAATATTTTCAAAAAAAAAATAT
* *
21107313 ATTTCTAATTTGGCCCAAATGGTGAAATAATTAGAAATATTTTCAACAAAAAA
1 ATTTCTAATTAGGCCCAAATGGTGAAATAATTAGAAATATTTTCAAAAAAAAA
21107366 TAAATTAACA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
55 5 0.11
56 28 0.62
57 12 0.27
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (57 bp):
ATTTCTAATTAGGCCCAAATGGTGAAATAATTAGAAATATTTTCAAAAAAAAAATAT
Done.