Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 14 of 121
Found at i:2334832 original size:18 final size:18
Alignment explanation
Indices: 2334809--2334853 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
2334799 GGTATGCATC
2334809 CATTATACCCTGGTATAT
1 CATTATACCCTGGTATAT
**
2334827 CATTATATATTCTGGTATAT
1 CA-T-TATACCCTGGTATAT
2334847 CATTATA
1 CATTATA
2334854 TATTCTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 6 0.26
19 2 0.09
20 15 0.65
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (18 bp):
CATTATACCCTGGTATAT
Found at i:2334841 original size:20 final size:20
Alignment explanation
Indices: 2334818--2334859 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
2334808 CCATTATACC
2334818 CTGGTATATCATTATATATT
1 CTGGTATATCATTATATATT
2334838 CTGGTATATCATTATATATT
1 CTGGTATATCATTATATATT
2334858 CT
1 CT
2334860 TGAGATTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.50
Consensus pattern (20 bp):
CTGGTATATCATTATATATT
Found at i:2337125 original size:47 final size:46
Alignment explanation
Indices: 2337073--2337167 Score: 113
Period size: 47 Copynumber: 2.0 Consensus size: 46
2337063 TTCTCCCCCA
*
2337073 AAAAAAGAACAAGTAATGAGA-GTGCTT-CTCTAAAAAATAAGAGAAATT
1 AAAAAA-AACAAGTAATG-GATGTGCTTCCT-TAAAAAAT-AGAAAAATT
* *
2337121 AAAAAAAATAAGTAATGGATGTGTTTCCTTAAAAAATAGAAAAATT
1 AAAAAAAACAAGTAATGGATGTGCTTCCTTAAAAAATAGAAAAATT
2337167 A
1 A
2337168 TTAAAAAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
46 11 0.26
47 23 0.55
48 8 0.19
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.24
Consensus pattern (46 bp):
AAAAAAAACAAGTAATGGATGTGCTTCCTTAAAAAATAGAAAAATT
Found at i:2337173 original size:49 final size:48
Alignment explanation
Indices: 2337118--2337309 Score: 185
Period size: 49 Copynumber: 3.9 Consensus size: 48
2337108 AATAAGAGAA
*
2337118 ATTAAAAAAAATAAGTAATGGATGTGTTTCCTTAAAAAATAGAAAAATT
1 ATTAAAAAAAATAGGTAATGGA-GTGTTTCCTTAAAAAATAGAAAAATT
* *
2337167 ATTAAAAAGAATAGGTAA-GGAAGTATTTTCC-TAAAAAATTAGAAGAAA-T
1 ATTAAAAAAAATAGGTAATGG-AGT-GTTTCCTTAAAAAA-TAGAA-AAATT
* * **
2337216 ATTAAAAGAAATAGGCAAAT-GAGTGTTTCCTTAAAAAATAGGGAAATT
1 ATTAAAAAAAATAGG-TAATGGAGTGTTTCCTTAAAAAATAGAAAAATT
* * * * *
2337264 ATTATAAGAATTAGGTAAAGGAGTGTTTCCCTAAAAAATAAGAAAA
1 ATTAAAAAAAATAGGTAATGGAGTGTTTCCTTAAAAAAT-AGAAAA
2337310 GTAGTAATAA
Statistics
Matches: 117, Mismatches: 16, Indels: 20
0.76 0.10 0.13
Matches are distributed among these distances:
47 5 0.04
48 51 0.44
49 55 0.47
50 6 0.05
ACGTcount: A:0.51, C:0.05, G:0.16, T:0.28
Consensus pattern (48 bp):
ATTAAAAAAAATAGGTAATGGAGTGTTTCCTTAAAAAATAGAAAAATT
Found at i:2337202 original size:48 final size:45
Alignment explanation
Indices: 2337092--2337309 Score: 172
Period size: 48 Copynumber: 4.5 Consensus size: 45
2337082 CAAGTAATGA
* * * *
2337092 GAGTGCTTCTCTAAAAAATAAGAGAAATTA--AAAAAAATAAGTAATG
1 GAGTGTTTC-CTAAAAAAT-AGAAAAATTATTAAAAGAATAGGTAA-G
2337138 GATGTGTTTCCTTAAAAAATAGAAAAATTATTAAAAAGAATAGGTAAG
1 GA-GTGTTTCC-TAAAAAATAGAAAAATTATT-AAAAGAATAGGTAAG
* * *
2337186 GAAGTATTTTCCTAAAAAATTAGAAGAAA-TATTAAAAGAAATAGGCAAAT
1 G-AGT-GTTTCCTAAAAAA-TAGAA-AAATTATTAAAAG-AATAGG-TAAG
** *
2337236 GAGTGTTTCCTTAAAAAATAGGGAAATTATTATAAGAATTAGGTAAAG
1 GAGTGTTTCC-TAAAAAATAGAAAAATTATTAAAAGAA-TAGGT-AAG
2337284 GAGTGTTTCCCTAAAAAATAAGAAAA
1 GAGTGTTT-CCTAAAAAAT-AGAAAA
2337310 GTAGTAATAA
Statistics
Matches: 140, Mismatches: 15, Indels: 31
0.75 0.08 0.17
Matches are distributed among these distances:
46 12 0.09
47 19 0.14
48 54 0.39
49 49 0.35
50 6 0.04
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.27
Consensus pattern (45 bp):
GAGTGTTTCCTAAAAAATAGAAAAATTATTAAAAGAATAGGTAAG
Found at i:2337386 original size:37 final size:36
Alignment explanation
Indices: 2337284--2337421 Score: 120
Period size: 37 Copynumber: 3.8 Consensus size: 36
2337274 TTAGGTAAAG
* ** * *
2337284 GAGTGTTTCCCT-AAAAAATAAGAAAAGTAGTAATAA
1 GAGTGTTTCCCTAAAAAAATAAGAGAACAAATAAT-T
* *
2337320 AAGTGTTTTCCTTAAGAAAAATAAGAGAACAAATAATGT
1 GAGTG-TTTCCCTAA-AAAAATAAGAGAACAAATAAT-T
*
2337359 GAGTGTTTCCCTAAAAAAAT-AGAAGAACAAGTAATT
1 GAGTGTTTCCCTAAAAAAATAAG-AGAACAAATAATT
*
2337395 G-GTGTTTCCCTTAAGAAAATAAGAGAA
1 GAGTGTTTCCC-TAAAAAAATAAGAGAA
2337422 TAAGTAATGA
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
35 9 0.11
36 20 0.24
37 25 0.30
38 9 0.11
39 21 0.25
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.26
Consensus pattern (36 bp):
GAGTGTTTCCCTAAAAAAATAAGAGAACAAATAATT
Found at i:2337427 original size:36 final size:38
Alignment explanation
Indices: 2337284--2337430 Score: 144
Period size: 36 Copynumber: 4.0 Consensus size: 38
2337274 TTAGGTAAAG
* ** **
2337284 GAGTGTTTCCC-TAA-AAAATAAGAAAAGTAGTAATAA
1 GAGTGTTTCCCTTAAGAAAATAAGAGAACAAGTAATGT
* * *
2337320 AAGTGTTTTCCTTAAGAAAAATAAGAGAACAAATAATGT
1 GAGTGTTTCCCTTAAG-AAAATAAGAGAACAAGTAATGT
*
2337359 GAGTGTTTCCC-TAAAAAAAT-AGAAGAACAAGTAAT-T
1 GAGTGTTTCCCTTAAGAAAATAAG-AGAACAAGTAATGT
*
2337395 G-GTGTTTCCCTTAAGAAAATAAGAGAATAAGTAATG
1 GAGTGTTTCCCTTAAGAAAATAAGAGAACAAGTAATG
2337431 AACGTTTGTC
Statistics
Matches: 90, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
35 9 0.10
36 32 0.36
37 21 0.23
38 3 0.03
39 25 0.28
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.27
Consensus pattern (38 bp):
GAGTGTTTCCCTTAAGAAAATAAGAGAACAAGTAATGT
Found at i:2337447 original size:73 final size:74
Alignment explanation
Indices: 2337322--2337467 Score: 183
Period size: 73 Copynumber: 2.0 Consensus size: 74
2337312 AGTAATAAAA
* * *
2337322 GTGTTTTCCTTAAGAAAAATAAGAGAACAAATAATGTGAGTGTTTCCCTAAAAAAATAGA-AGAA
1 GTGTTTCCCTTAAGAAAAATAAGAGAACAAATAATGTAAGTGTTTCCATAAAAAAAT-GATAGAA
2337386 CAAGTAATTG
65 CAAGTAATTG
* *
2337396 GTGTTTCCCTTAAG-AAAATAAGAGAATAAGTAATG-AACGT-TTGTCCATAAAAAAATGATAGA
1 GTGTTTCCCTTAAGAAAAATAAGAGAACAAATAATGTAA-GTGTT-TCCATAAAAAAATGATAGA
*
2337458 ATAAGTAATT
64 ACAAGTAATT
2337468 AATATGTTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
72 5 0.08
73 45 0.71
74 13 0.21
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.28
Consensus pattern (74 bp):
GTGTTTCCCTTAAGAAAAATAAGAGAACAAATAATGTAAGTGTTTCCATAAAAAAATGATAGAAC
AAGTAATTG
Found at i:2337484 original size:37 final size:37
Alignment explanation
Indices: 2337362--2337521 Score: 100
Period size: 35 Copynumber: 4.4 Consensus size: 37
2337352 ATAATGTGAG
* * *
2337362 TGTTTCCCTAAAAAAATAGA-AGAACAAGTAATT--GG
1 TGTTTTCCTAAAAAAAT-GATAGAATAAGTAATTAAGA
* * * * *
2337397 TGTTTCCCTTAAGAAAATAAGAGAATAAGTAATGAACG-
1 TGTTTTCC-TAAAAAAATGATAGAATAAGTAATTAA-GA
* *
2337435 T-TTGTCCATAAAAAAATGATAGAATAAGTAATTAATA
1 TGTTTTCC-TAAAAAAATGATAGAATAAGTAATTAAGA
* * * *
2337472 TGTTTTCCTAAAAATA-G-TATAATAAGCAATGAAGA
1 TGTTTTCCTAAAAAAATGATAGAATAAGTAATTAAGA
*
2337507 TATTTTCCTAAAAAA
1 TGTTTTCCTAAAAAA
2337522 TAGGAGAACA
Statistics
Matches: 98, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
35 36 0.37
36 20 0.20
37 35 0.36
38 6 0.06
39 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (37 bp):
TGTTTTCCTAAAAAAATGATAGAATAAGTAATTAAGA
Found at i:2337659 original size:37 final size:37
Alignment explanation
Indices: 2337607--2337694 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
2337597 AGTAAAAATG
** *
2337607 AATATTTTCCT-AAAAAATAGTAAAACAAGTAATGGA
1 AATATTTTCCTAAAAAAATAAAAAAACAAGTAATGAA
* *
2337643 AATATTTTCCTAAAAAAATAAAAAAATAAGTCATGAA
1 AATATTTTCCTAAAAAAATAAAAAAACAAGTAATGAA
2337680 AATACTTTT-CTAAAA
1 AATA-TTTTCCTAAAA
2337695 GAATTGGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
36 11 0.24
37 30 0.67
38 4 0.09
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.30
Consensus pattern (37 bp):
AATATTTTCCTAAAAAAATAAAAAAACAAGTAATGAA
Found at i:2338878 original size:14 final size:16
Alignment explanation
Indices: 2338843--2338879 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2338833 ACTTCTTAAC
*
2338843 ATATAAAAACTATGTG
1 ATATAATAACTATGTG
2338859 ATATAATAA-TATGT-
1 ATATAATAACTATGTG
2338873 ATATAAT
1 ATATAAT
2338880 GTAGTACTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 5 0.25
16 8 0.40
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (16 bp):
ATATAATAACTATGTG
Found at i:2368941 original size:2 final size:2
Alignment explanation
Indices: 2368934--2368958 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2368924 ATTATTTCAA
2368934 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2368959 AAGATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2370547 original size:47 final size:47
Alignment explanation
Indices: 2370493--2370588 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
2370483 GACTGGAAGT
*
2370493 AAGATCTCTTTTATCCTTTCCCAAAATTTAGATGCACAGTATTTACC
1 AAGATCTCTTTTATCCTTTCCCAAAACTTAGATGCACAGTATTTACC
*
2370540 AAGATCTCTTTTATCCTTTTCCAAAACTTAGATGCACAGTATTTACC
1 AAGATCTCTTTTATCCTTTCCCAAAACTTAGATGCACAGTATTTACC
2370587 AA
1 AA
2370589 CAGATACCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (47 bp):
AAGATCTCTTTTATCCTTTCCCAAAACTTAGATGCACAGTATTTACC
Found at i:2372764 original size:21 final size:21
Alignment explanation
Indices: 2372733--2372793 Score: 97
Period size: 21 Copynumber: 2.9 Consensus size: 21
2372723 TTTAGTCTTT
2372733 TATATTAAATAAGATATATTA
1 TATATTAAATAAGATATATTA
*
2372754 TAT-TATAAATAAGATATATTT
1 TATAT-TAAATAAGATATATTA
2372775 TATATTAAATAAGATATAT
1 TATATTAAATAAGATATAT
2372794 AATTAAATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
20 1 0.03
21 35 0.95
22 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
TATATTAAATAAGATATATTA
Found at i:2375697 original size:30 final size:28
Alignment explanation
Indices: 2375663--2375767 Score: 84
Period size: 30 Copynumber: 3.5 Consensus size: 28
2375653 AAAGATTGAT
*
2375663 ATTAAAAGTTTATTTAAGTTTAAATTAAAA
1 ATTAAAA-TTTATTT-AGTATAAATTAAAA
*
2375693 ATTAAGAATTTATTTGGATATAAATTAAAA
1 ATTAA-AATTTATTTAG-TATAAATTAAAA
* * **
2375723 GTTAAATATTTATCTGAGTGCAAATTAAAA
1 ATTAAA-ATTTAT-TTAGTATAAATTAAAA
*
2375753 ATTAATGATTTATTT
1 ATTAA-AATTTATTT
2375768 GATTGCAACA
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
29 3 0.05
30 53 0.88
31 4 0.07
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.43
Consensus pattern (28 bp):
ATTAAAATTTATTTAGTATAAATTAAAA
Found at i:2375775 original size:30 final size:30
Alignment explanation
Indices: 2375684--2375775 Score: 93
Period size: 30 Copynumber: 3.1 Consensus size: 30
2375674 ATTTAAGTTT
2375684 AAATTAAAAATTAA-GAATTTATTTGGATAT--
1 AAATTAAAAATTAATG-ATTTATTT-GAT-TGC
* * *
2375714 AAATTAAAAGTTAAAT-ATTTATCTGAGTGC
1 AAATTAAAAATT-AATGATTTATTTGATTGC
2375744 AAATTAAAAATTAATGATTTATTTGATTGC
1 AAATTAAAAATTAATGATTTATTTGATTGC
2375774 AA
1 AA
2375776 CAAAAATATA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
28 1 0.02
29 5 0.10
30 43 0.84
31 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (30 bp):
AAATTAAAAATTAATGATTTATTTGATTGC
Found at i:2376227 original size:2 final size:2
Alignment explanation
Indices: 2376220--2376251 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2376210 GCCAATCCCC
2376220 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2376252 GCATGGCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2385396 original size:2 final size:2
Alignment explanation
Indices: 2385384--2385417 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
2385374 ACCATTTGAG
*
2385384 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2385418 TAAAGTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:2385944 original size:14 final size:14
Alignment explanation
Indices: 2385927--2385953 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2385917 AAAATGAATT
2385927 AAAAAAAGTAAAAA
1 AAAAAAAGTAAAAA
2385941 AAAAAAAGTAAAA
1 AAAAAAAGTAAAA
2385954 TACATAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.07
Consensus pattern (14 bp):
AAAAAAAGTAAAAA
Found at i:2387337 original size:2 final size:2
Alignment explanation
Indices: 2387330--2387384 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
2387320 TAGTAATGAT
2387330 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
2387372 GA GA GA GA G- GA GA
1 GA GA GA GA GA GA GA
2387385 CCTTGACTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:2388587 original size:98 final size:98
Alignment explanation
Indices: 2388478--2388673 Score: 392
Period size: 98 Copynumber: 2.0 Consensus size: 98
2388468 TCTTTAAATT
2388478 TAAAGAGGTATAAGTAGATTTTAACTTAGAATAAATCAATTATATTTATAGTTGTAAATCCATGA
1 TAAAGAGGTATAAGTAGATTTTAACTTAGAATAAATCAATTATATTTATAGTTGTAAATCCATGA
2388543 CAGTATATTAATAAATTAAAGATAATTTAATAA
66 CAGTATATTAATAAATTAAAGATAATTTAATAA
2388576 TAAAGAGGTATAAGTAGATTTTAACTTAGAATAAATCAATTATATTTATAGTTGTAAATCCATGA
1 TAAAGAGGTATAAGTAGATTTTAACTTAGAATAAATCAATTATATTTATAGTTGTAAATCCATGA
2388641 CAGTATATTAATAAATTAAAGATAATTTAATAA
66 CAGTATATTAATAAATTAAAGATAATTTAATAA
2388674 AAAAAGTGAT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (98 bp):
TAAAGAGGTATAAGTAGATTTTAACTTAGAATAAATCAATTATATTTATAGTTGTAAATCCATGA
CAGTATATTAATAAATTAAAGATAATTTAATAA
Found at i:2388728 original size:55 final size:56
Alignment explanation
Indices: 2388646--2388764 Score: 190
Period size: 57 Copynumber: 2.2 Consensus size: 56
2388636 CATGACAGTA
*
2388646 TATTAAT-AAATTAAAGATAATTTAAT-AAAAA-AAGTGATAATTTAGTAGTTAGT
1 TATTAATAAAATTAAAGATAATTTAATAAAAAATAAGTGATAATTTAGTAGTTACT
*
2388699 TATTAATAATAATTAAAGATAGTTTAATAAAAAATAAGTGATAATTTAGTAGTTACT
1 TATTAATAA-AATTAAAGATAATTTAATAAAAAATAAGTGATAATTTAGTAGTTACT
2388756 TATTAATAA
1 TATTAATAA
2388765 CTTGATAAGT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
53 7 0.12
54 1 0.02
55 17 0.28
56 5 0.08
57 30 0.50
ACGTcount: A:0.50, C:0.01, G:0.10, T:0.39
Consensus pattern (56 bp):
TATTAATAAAATTAAAGATAATTTAATAAAAAATAAGTGATAATTTAGTAGTTACT
Found at i:2388910 original size:21 final size:21
Alignment explanation
Indices: 2388850--2388910 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 21
2388840 AATTGATAGT
* *
2388850 AGTAAAT-AATATAATTTAGT
1 AGTAAATCAATATAACTTAGA
* *
2388870 AGTTAATCATTGGA-AACTTAGA
1 AGTAAATCAAT--ATAACTTAGA
2388892 AGTAAATCAATATAACTTA
1 AGTAAATCAATATAACTTA
2388911 TTAATAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 7 0.23
21 8 0.26
22 15 0.48
23 1 0.03
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (21 bp):
AGTAAATCAATATAACTTAGA
Found at i:2388992 original size:43 final size:43
Alignment explanation
Indices: 2388883--2389005 Score: 110
Period size: 43 Copynumber: 2.9 Consensus size: 43
2388873 TAATCATTGG
* * *
2388883 AAACTTAGA-AGTAAATCAAT--ATAACTTATTAATAAATAATTA
1 AAACTTA-ATAGTAAATC-ATGGATAATTTAATAATAAATAATGA
* *
2388925 ATACTTAATAGTAAATTATGGATAATTTAAT-ATAAATAAGTGA
1 AAACTTAATAGTAAATCATGGATAATTTAATAATAAATAA-TGA
* * * *
2388968 AAACTTGATAGTGAATCATTGATAATTTAGTAATAAAT
1 AAACTTAATAGTAAATCATGGATAATTTAATAATAAAT
2389006 CAGTAAGAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
41 3 0.05
42 21 0.32
43 35 0.54
44 6 0.09
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.36
Consensus pattern (43 bp):
AAACTTAATAGTAAATCATGGATAATTTAATAATAAATAATGA
Found at i:2389077 original size:11 final size:10
Alignment explanation
Indices: 2389055--2389093 Score: 51
Period size: 11 Copynumber: 3.6 Consensus size: 10
2389045 TAAATCGATG
2389055 ATAACATAATA
1 ATAA-ATAATA
2389066 ATAAATACATA
1 ATAAATA-ATA
2389077 ATAATATAATA
1 ATAA-ATAATA
2389088 ATAAAT
1 ATAAAT
2389094 TATTGATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 5 0.19
11 18 0.69
12 3 0.12
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAAATAATA
Found at i:2389077 original size:14 final size:15
Alignment explanation
Indices: 2389058--2389091 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
2389048 ATCGATGATA
2389058 ACATAATAATA-AAT
1 ACATAATAATATAAT
2389072 ACATAATAATATAAT
1 ACATAATAATATAAT
2389087 A-ATAA
1 ACATAA
2389092 ATTATTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
ACATAATAATATAAT
Found at i:2389151 original size:22 final size:22
Alignment explanation
Indices: 2389055--2389145 Score: 76
Period size: 22 Copynumber: 4.1 Consensus size: 22
2389045 TAAATCGATG
* *
2389055 ATAACATAATAATAAA-TACATA
1 ATAACATAGTAGTAAATTAC-TA
* * * * *
2389077 ATAATATAATAATAAATTATTG
1 ATAACATAGTAGTAAATTACTA
** *
2389099 ATAATTTAGTAGTAAATTATTA
1 ATAACATAGTAGTAAATTACTA
2389121 ATAACATAGTAGTAAATTACTA
1 ATAACATAGTAGTAAATTACTA
2389143 ATA
1 ATA
2389146 GTATAGCAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 56 0.97
23 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAACATAGTAGTAAATTACTA
Found at i:2389204 original size:33 final size:33
Alignment explanation
Indices: 2389155--2389250 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 33
2389145 AGTATAGCAG
* *
2389155 TTTACTAATAACTTAGTTATAAATCAATGATAA
1 TTTAATAATAAATTAGTTATAAATCAATGATAA
*
2389188 TTTAATAATAAATTAG-T-T-AATCATTGATAA
1 TTTAATAATAAATTAGTTATAAATCAATGATAA
* * * *
2389218 TTTTATAGTAAATTA-TTGATAAATTAATAATAA
1 TTTAATAATAAATTAGTT-ATAAATCAATGATAA
2389251 ATCAATTATA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
30 25 0.49
31 1 0.02
32 2 0.04
33 23 0.45
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (33 bp):
TTTAATAATAAATTAGTTATAAATCAATGATAA
Found at i:2389251 original size:22 final size:22
Alignment explanation
Indices: 2389210--2389276 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
2389200 TTAGTTAATC
* * *
2389210 ATTGATAATTTTATAGTAAATT
1 ATTGATAAATTAATAATAAATT
*
2389232 ATTGATAAATTAATAATAAATCA
1 ATTGATAAATTAATAATAAAT-T
* *
2389255 ATT-ATAACTTCATAATAAATT
1 ATTGATAAATTAATAATAAATT
2389276 A
1 A
2389277 CCAATAACTT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 1 0.03
22 33 0.89
23 3 0.08
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (22 bp):
ATTGATAAATTAATAATAAATT
Found at i:2389283 original size:22 final size:22
Alignment explanation
Indices: 2389244--2389320 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
2389234 TGATAAATTA
***
2389244 ATAATAAATCAATTATAACTTC
1 ATAATAAATCACCAATAACTTC
* *
2389266 ATAATAAATTACCAATAACTTT
1 ATAATAAATCACCAATAACTTC
* * *
2389288 ATGATAAATCACCAATAATTTG
1 ATAATAAATCACCAATAACTTC
*
2389310 ATAGTAAATCA
1 ATAATAAATCA
2389321 TTTAAATCAA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (22 bp):
ATAATAAATCACCAATAACTTC
Found at i:2389676 original size:22 final size:22
Alignment explanation
Indices: 2389635--2389690 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
2389625 TAAAGATATG
*
2389635 TTAATAA-AAATAAGTAATAAT
1 TTAATAATAAATTAGTAATAAT
* *
2389656 TTAATAGTAAATTAGTGATAAT
1 TTAATAATAAATTAGTAATAAT
2389678 TTAATAATAAATT
1 TTAATAATAAATT
2389691 GATTTTGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 6 0.20
22 24 0.80
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (22 bp):
TTAATAATAAATTAGTAATAAT
Found at i:2389754 original size:22 final size:22
Alignment explanation
Indices: 2389726--2389772 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
2389716 GATAAATTTG
2389726 GTAGTAAATC-ATAAATAACTTA
1 GTAGTAAATCAAT-AATAACTTA
*
2389748 GTAGTAAATCAATAATAATTTA
1 GTAGTAAATCAATAATAACTTA
2389770 GTA
1 GTA
2389773 AATTATTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (22 bp):
GTAGTAAATCAATAATAACTTA
Found at i:2389782 original size:12 final size:12
Alignment explanation
Indices: 2389765--2389790 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2389755 ATCAATAATA
2389765 ATTTAGTAAATT
1 ATTTAGTAAATT
2389777 ATTTAGTAAATT
1 ATTTAGTAAATT
2389789 AT
1 AT
2389791 CGAAAACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATTTAGTAAATT
Found at i:2389805 original size:22 final size:21
Alignment explanation
Indices: 2389780--2389879 Score: 76
Period size: 22 Copynumber: 4.6 Consensus size: 21
2389770 GTAAATTATT
*
2389780 TAGTAAATTATCGAAAACTTAA
1 TAGTAAATCAT-GAAAACTTAA
* * *
2389802 TAGTTAATCAGTGATAATTTAA
1 TAGTAAATCA-TGAAAACTTAA
*
2389824 TAGTAAATCATGTACAACTTAA
1 TAGTAAATCATG-AAAACTTAA
* **
2389846 TA-TAAATCAGTGATAACTCGA
1 TAGTAAATCA-TGAAAACTTAA
*
2389867 TAGTTAATCATGA
1 TAGTAAATCATGA
2389880 GATAATTTGG
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
21 20 0.32
22 42 0.67
23 1 0.02
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (21 bp):
TAGTAAATCATGAAAACTTAA
Found at i:2389863 original size:21 final size:22
Alignment explanation
Indices: 2389795--2389863 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 22
2389785 AATTATCGAA
*
2389795 AACTTAATAGTTAATCAGTGAT
1 AACTTAATAGTAAATCAGTGAT
* *
2389817 AATTTAATAGTAAATCA-TGTAC
1 AACTTAATAGTAAATCAGTG-AT
2389839 AACTTAATA-TAAATCAGTGAT
1 AACTTAATAGTAAATCAGTGAT
2389860 AACT
1 AACT
2389864 CGATAGTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 14 0.35
22 26 0.65
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (22 bp):
AACTTAATAGTAAATCAGTGAT
Found at i:2389870 original size:43 final size:44
Alignment explanation
Indices: 2389795--2389878 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
2389785 AATTATCGAA
* * *
2389795 AACTTAATAGTTAATCAGTGATAATTTAATAGTAAATCATGTAC
1 AACTTAATAGTAAATCAGTGATAACTCAATAGTAAATCATGTAC
* *
2389839 AACTTAATA-TAAATCAGTGATAACTCGATAGTTAATCATG
1 AACTTAATAGTAAATCAGTGATAACTCAATAGTAAATCATG
2389879 AGATAATTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 26 0.74
44 9 0.26
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.35
Consensus pattern (44 bp):
AACTTAATAGTAAATCAGTGATAACTCAATAGTAAATCATGTAC
Found at i:2389957 original size:22 final size:22
Alignment explanation
Indices: 2389934--2390052 Score: 96
Period size: 22 Copynumber: 5.4 Consensus size: 22
2389924 GAAAATTAAG
* *
2389934 TAGTAAATCAATGATAATATAG
1 TAGTAAATCATTGATAATATAA
* *
2389956 TAATAAATGCA-TAATAAATATAA
1 TAGTAAAT-CATTGAT-AATATAA
* * *
2389979 TATTAAATTATTGATAATTTAA
1 TAGTAAATCATTGATAATATAA
* * *
2390001 TAGTAAATTATTGATAATTTAG
1 TAGTAAATCATTGATAATATAA
* * *
2390023 TAGCAAACCATTAATAATATAA
1 TAGTAAATCATTGATAATATAA
2390045 TAGTAAAT
1 TAGTAAAT
2390053 TACAAATAAC
Statistics
Matches: 77, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
22 59 0.77
23 18 0.23
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.37
Consensus pattern (22 bp):
TAGTAAATCATTGATAATATAA
Found at i:2390017 original size:67 final size:67
Alignment explanation
Indices: 2389929--2390089 Score: 157
Period size: 66 Copynumber: 2.4 Consensus size: 67
2389919 TAACTGAAAA
* * *
2389929 TTAAGTAGTAAATCAATGATAATATAGTAATAAATGCA-TAATAAATATAATATTAAATTATTGA
1 TTAAGTAGTAAATCAATGATAATATAGTAACAAA-CCATTAAT-AATATAATAGTAAATTATTGA
2389993 TAAT
64 TAAT
* * * * ***
2389997 TTAA-TAGTAAATTATTGATAATTTAGTAGCAAACCATTAATAATATAATAGTAAATTACAAATA
1 TTAAGTAGTAAATCAATGATAATATAGTAACAAACCATTAATAATATAATAGTAAATTATTGATA
*
2390061 AC
66 AT
* * *
2390063 TTAATTA-CAAATCAATGATAATTTAGT
1 TTAAGTAGTAAATCAATGATAATATAGT
2390090 TATTAATCAG
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
66 43 0.56
67 30 0.39
68 4 0.05
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.37
Consensus pattern (67 bp):
TTAAGTAGTAAATCAATGATAATATAGTAACAAACCATTAATAATATAATAGTAAATTATTGATA
AT
Found at i:2390259 original size:22 final size:21
Alignment explanation
Indices: 2390234--2390320 Score: 68
Period size: 22 Copynumber: 4.0 Consensus size: 21
2390224 AGTAGGAAAC
2390234 TATTAAAAACTTAATGATAAAT
1 TATTAAAAACTTAAT-ATAAAT
* *
2390256 TATTCATAACTTAATAGTAAAT
1 TATTAAAAACTTAATA-TAAAT
* ** *
2390278 TAATACTAATTTAATAATAAAT
1 TATTAAAAACTTAAT-ATAAAT
*
2390300 TATTGAAAACTT-ATAGTAAAT
1 TATTAAAAACTTAATA-TAAAT
2390321 AACTGATAAC
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
20 1 0.02
21 8 0.16
22 41 0.80
23 1 0.02
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.39
Consensus pattern (21 bp):
TATTAAAAACTTAATATAAAT
Found at i:2390280 original size:11 final size:11
Alignment explanation
Indices: 2390244--2390301 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
2390234 TATTAAAAAC
*
2390244 TTAATGATAAA
1 TTAATAATAAA
* * *
2390255 TTATTCATAAC
1 TTAATAATAAA
*
2390266 TTAATAGTAAA
1 TTAATAATAAA
* *
2390277 TTAATACTAAT
1 TTAATAATAAA
2390288 TTAATAATAAA
1 TTAATAATAAA
2390299 TTA
1 TTA
2390302 TTGAAAACTT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.41
Consensus pattern (11 bp):
TTAATAATAAA
Found at i:2391053 original size:21 final size:21
Alignment explanation
Indices: 2390908--2391103 Score: 75
Period size: 21 Copynumber: 9.4 Consensus size: 21
2390898 CCAAATTATA
* * *
2390908 TATATGAAAGGTTATCAAAGT
1 TATATCAAAAGTTATCAAAAT
* * *
2390929 TACATCAAGATGTTATTAAAAT
1 TATATCAA-AAGTTATCAAAAT
*
2390951 TTTATCAAATA-TTATCAAAAT
1 TATATCAAA-AGTTATCAAAAT
* *
2390972 TATAT-TAATGATTA-CTAAAAT
1 TATATCAAAAG-TTATC-AAAAT
* *
2390993 TATAT-AATAAGTTA-CCAAAC
1 TATATCAA-AAGTTATCAAAAT
** * *
2391013 TA-ATTGAAGGTTACCAAAAT
1 TATATCAAAAGTTATCAAAAT
2391033 TATATCGAAAA-TTATCAAAAT
1 TATATC-AAAAGTTATCAAAAT
* * *
2391054 TTTATCAAAAGTTTTCAAACT
1 TATATCAAAAGTTATCAAAAT
* * * *
2391075 TCTAACAAAGGTTACCAAAA-
1 TATATCAAAAGTTATCAAAAT
*
2391095 CATATCAAA
1 TATATCAAA
2391104 GGTGGTTAAA
Statistics
Matches: 128, Mismatches: 36, Indels: 23
0.68 0.19 0.12
Matches are distributed among these distances:
19 7 0.05
20 25 0.20
21 76 0.59
22 20 0.16
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (21 bp):
TATATCAAAAGTTATCAAAAT
Found at i:2393877 original size:26 final size:25
Alignment explanation
Indices: 2393821--2393877 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
2393811 TTTTTACCTA
*
2393821 GAAATTTTATAGAAATTTACCATTT
1 GAAATTTTATAGAAATTTACCATTG
* *
2393846 GAAATTTT-TATAAATTTCATCATTG
1 GAAATTTTATAGAAATTT-ACCATTG
2393871 GATAATT
1 GA-AATT
2393878 AATATTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 8 0.30
25 15 0.56
26 4 0.15
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.46
Consensus pattern (25 bp):
GAAATTTTATAGAAATTTACCATTG
Found at i:2393946 original size:4 final size:4
Alignment explanation
Indices: 2393937--2393985 Score: 53
Period size: 4 Copynumber: 11.8 Consensus size: 4
2393927 ATACTAAGAA
* * *
2393937 AAAT AAAT AAAC ACAT AAAAT AAAT AAAT ATAT AAAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAA
2393986 AAAACCAAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
4 31 0.84
5 6 0.16
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:2393974 original size:13 final size:13
Alignment explanation
Indices: 2393937--2393986 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
2393927 ATACTAAGAA
*
2393937 AAATAAAT-AAAC
1 AAATAAATAAAAT
*
2393949 ACATAAA-ATAAAT
1 AAATAAATA-AAAT
*
2393962 AAATATATAAAAT
1 AAATAAATAAAAT
2393975 AAATAAATAAAA
1 AAATAAATAAAA
2393987 AAACCAAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
12 6 0.20
13 23 0.77
14 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:2393982 original size:17 final size:17
Alignment explanation
Indices: 2393936--2393983 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
2393926 AATACTAAGA
*
2393936 AAAATAAATAAACACAT
1 AAAATAAATAAATACAT
*
2393953 AAAATAAATAAATATAT
1 AAAATAAATAAATACAT
2393970 AAAATAAATAAATA
1 AAAATAAATAAATA
2393984 AAAAAACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAATAAATAAATACAT
Found at i:2394435 original size:13 final size:13
Alignment explanation
Indices: 2394417--2394451 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
2394407 GGAATTCTCC
*
2394417 AAAAAATTCCCCA
1 AAAAAATTCACCA
*
2394430 AAAAAAATCACCA
1 AAAAAATTCACCA
2394443 AAAAAATTC
1 AAAAAATTC
2394452 TAAAAAATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.63, C:0.23, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAAATTCACCA
Found at i:2394456 original size:10 final size:10
Alignment explanation
Indices: 2394443--2394477 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
2394433 AAAATCACCA
2394443 AAAAAATTCT
1 AAAAAATTCT
2394453 AAAAAATTCTT
1 AAAAAATTC-T
*
2394464 AAAAAACTCT
1 AAAAAATTCT
2394474 AAAA
1 AAAA
2394478 TTGCTTTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAAAATTCT
Found at i:2395088 original size:42 final size:41
Alignment explanation
Indices: 2394992--2395282 Score: 341
Period size: 41 Copynumber: 7.0 Consensus size: 41
2394982 AAACAAAGCA
* * *
2394992 CCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCT
* ***
2395033 CCTCTAAACAGAGGTATTGCGACTTTGAAAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTG-AAAAATAAATTGCT
* * ** *
2395075 CTTTTAAGTAGAGGCACCACGACTTTGGAAAAATAAATTACT
1 CCTCTAAACAGAGGCACCACGACTTT-GAAAAATAAATTGCT
* *
2395117 CCTCTAAACAGAGGCACCATGACTTTGGAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCT
* *
2395158 CCTCTAAACAAAGGAACCACGACTTTGAAAAATAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCT
* * *
2395199 CCTCTAAACAGAGGCACCACAACTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCT
* * *
2395240 CTTCTAAACAGAGGCAACCACAACTTTTG-AAAATAAAATGCT
1 CCTCTAAACAGAGGC-ACCACGAC-TTTGAAAAATAAATTGCT
2395282 C
1 C
2395283 ATTGACAATC
Statistics
Matches: 212, Mismatches: 34, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
41 121 0.57
42 86 0.41
43 5 0.02
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCT
Found at i:2395210 original size:82 final size:82
Alignment explanation
Indices: 2394994--2395282 Score: 346
Period size: 83 Copynumber: 3.5 Consensus size: 82
2394984 ACAAAGCACC
** * * * ***
2394994 TCTAAACAGAGGCTCAACAACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGTATTGCGACTTT
1 TCTAAACAGAGGAACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
*
2395059 GAAAAAATAAATTGCTCT
66 G-GAAAATAAATTGCTCT
* ** * * *
2395077 TTTAAGTAGAGGCACCACGACTTTGGAAAAATAAATTACTCCTCTAAACAGAGGCACCATGACTT
1 TCTAAACAGAGGAACCACGACTTT-GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTT
*
2395142 TGGAAAATAAATTGCTCC
65 TGGAAAATAAATTGCTCT
* *
2395160 TCTAAACAAAGGAACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTT
1 TCTAAACAGAGGAACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
*
2395225 GGAAAGTAAATTGCTCT
66 GGAAAATAAATTGCTCT
* *
2395242 TCTAAACAGAGGCAACCACAACTTTTG-AAAATAAAATGCTC
1 TCTAAACAGAGG-AACCACGAC-TTTGAAAAATAAATTGCTC
2395283 ATTGACAATC
Statistics
Matches: 176, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
82 64 0.36
83 72 0.41
84 40 0.23
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (82 bp):
TCTAAACAGAGGAACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
GGAAAATAAATTGCTCT
Found at i:2395552 original size:33 final size:33
Alignment explanation
Indices: 2395501--2395568 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
2395491 AACATCCCTA
* ** * *
2395501 CACTAGACCTTTTCAAATGCAGTGTATGCTATG
1 CACTAGACATTTAAAAATGCAATGCATGCTATG
2395534 CACTAGACATTTAAAAATGCAATGCATGCTATG
1 CACTAGACATTTAAAAATGCAATGCATGCTATG
2395567 CA
1 CA
2395569 AATACTGGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (33 bp):
CACTAGACATTTAAAAATGCAATGCATGCTATG
Found at i:2405333 original size:23 final size:23
Alignment explanation
Indices: 2405290--2405354 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
2405280 ATATATATTT
** *
2405290 TTTATCTATTAATATTT-TTATTA
1 TTTATCTATTTCT-TTTATTATCA
2405313 TTTATCTACTTT-TTTTATTATCA
1 TTTATCTA-TTTCTTTTATTATCA
2405336 TTTATCTATTTCTTTTATT
1 TTTATCTATTTCTTTTATT
2405355 TATCTAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
22 6 0.16
23 29 0.78
24 2 0.05
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTATCTATTTCTTTTATTATCA
Found at i:2405614 original size:17 final size:17
Alignment explanation
Indices: 2405592--2405626 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2405582 AGAAGAAGAC
2405592 ACACAGAAAAAAAACAG
1 ACACAGAAAAAAAACAG
* *
2405609 ACACAGAGAAGAAACAG
1 ACACAGAAAAAAAACAG
2405626 A
1 A
2405627 AGCTAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.17, G:0.17, T:0.00
Consensus pattern (17 bp):
ACACAGAAAAAAAACAG
Found at i:2405781 original size:52 final size:53
Alignment explanation
Indices: 2405719--2405845 Score: 206
Period size: 52 Copynumber: 2.4 Consensus size: 53
2405709 TTAGGTGTTT
2405719 TTTTTCATTTTATTTATTTATTTATTATTATATTAGGATTGTTTAATA-TTTTA
1 TTTTT-ATTTTATTTATTTATTTATTATTATATTAGGATTGTTTAATATTTTTA
*
2405772 TTTTTATTTTTATTTATTT-GTTATTATTATATTAGGATTGTTTAATATTTTTA
1 TTTTTA-TTTTATTTATTTATTTATTATTATATTAGGATTGTTTAATATTTTTA
2405825 TTTTTATTTT-TTTATTTATTT
1 TTTTTATTTTATTTATTTATTT
2405846 TATTTTCTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
51 7 0.10
52 34 0.49
53 28 0.41
ACGTcount: A:0.24, C:0.01, G:0.06, T:0.70
Consensus pattern (53 bp):
TTTTTATTTTATTTATTTATTTATTATTATATTAGGATTGTTTAATATTTTTA
Found at i:2405844 original size:18 final size:18
Alignment explanation
Indices: 2405821--2405856 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
2405811 GTTTAATATT
2405821 TTTATTTTTATTTT-TTTA
1 TTTA-TTTTATTTTCTTTA
2405839 TTTATTTTATTTTCTTTA
1 TTTATTTTATTTTCTTTA
2405857 AATAAAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTATTTTATTTTCTTTA
Found at i:2406020 original size:58 final size:56
Alignment explanation
Indices: 2405917--2406432 Score: 308
Period size: 52 Copynumber: 9.5 Consensus size: 56
2405907 AGTTTTGAGA
*
2405917 AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAGTTTCCAAAAAATATTTTTAGGG
1 AAAAGTTGAAAGTATCAATTTTTCT-GAAATT-AAAGTTTTCAAAAAATATTTTT-GGG
* *
2405976 AAAAGTTAAAAGTATCAATTTTTCTAGAAATTAAAGTTTTCAAAAAATAGTTTTGCGG
1 AAAAGTTGAAAGTATCAATTTTTCT-GAAATTAAAGTTTTCAAAAAATATTTTTG-GG
* * * * ** *
2406034 AAAAGTTGAAAGTATGAATTTTCCTTAAAAATAAA-TTTTCAAAAAAGGTTTTT-TG
1 AAAAGTTGAAAGTATCAATTTTTC-TGAAATTAAAGTTTTCAAAAAATATTTTTGGG
* *
2406089 -AATG-T-AAAGTATCAATTTTCCTG-AATTAAAAGTTTT---AAAATCATTTTTGGG
1 AAAAGTTGAAAGTATCAATTTTTCTGAAATT-AAAGTTTTCAAAAAAT-ATTTTTGGG
* * * * * *
2406140 GAAAGTTGAAAGTATCAA--TTTCT-TAACT-AA-TTTTTAAAAGATTTTTTTGAGG
1 AAAAGTTGAAAGTATCAATTTTTCTGAAATTAAAGTTTTCAAAAAATATTTTTG-GG
*
2406192 AAAAGTTGAAAGATATCAA-TTTTCTCG-AATTAAAGTTTTCACAAAATA-TTTTGAGG
1 AAAAGTTGAAAG-TATCAATTTTTCT-GAAATTAAAGTTTTCAAAAAATATTTTTG-GG
* * * ** **
2406248 --AAGTTG-AAGTATTCAATTTTTTTTAAAGATAAA---TTCAAAGGGAT-TTTTAAGG
1 AAAAGTTGAAAGTA-TCAATTTTTCTGAAA-TTAAAGTTTTCAAA-AAATATTTTTGGG
* * * *
2406300 -AAAGTTGAAAGTATCAA-TTTTCTTGAAAAT-AAGCTTTCCACAAAAAATATTTAT--C
1 AAAAGTTGAAAGTATCAATTTTTC-TGAAATTAAAG-TTT--TCAAAAAATATTTTTGGG
* * *
2406355 AAAAATTGAAA-TATCAATTTTTTCTGAAATTAAAG-TTTC-CAAAATATTTTGGGG
1 AAAAGTTGAAAGTATCAA-TTTTTCTGAAATTAAAGTTTTCAAAAAATATTTTTGGG
*
2406409 AAAAGTT--AAGTATCAAATTTTCTG
1 AAAAGTTGAAAGTATCAATTTTTCTG
2406433 CACAAAAGGA
Statistics
Matches: 358, Mismatches: 56, Indels: 93
0.71 0.11 0.18
Matches are distributed among these distances:
49 8 0.02
50 10 0.03
51 13 0.04
52 79 0.22
53 41 0.11
54 42 0.12
55 17 0.05
56 27 0.08
57 40 0.11
58 50 0.14
59 31 0.09
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (56 bp):
AAAAGTTGAAAGTATCAATTTTTCTGAAATTAAAGTTTTCAAAAAATATTTTTGGG
Found at i:2406252 original size:106 final size:107
Alignment explanation
Indices: 2405901--2406266 Score: 272
Period size: 106 Copynumber: 3.3 Consensus size: 107
2405891 AATTTTCAGA
* * * * * * *
2405901 AAAAAAAGTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAGTTTCCAAAAAAT
1 AAAAATAGTTTTGAG-GAAAGTTGAAAGTATCAA-TTTCCT-TAAAAT-AAA-TTTTCAAAAAAG
* * *
2405966 ATTTTTAGGGAAAAGTTAAAAGTATCAATTTTTCTAGAAATTAAAGTTTTC
61 GTTTTT-TGGAAAAGTT-AAAGTATCAA-TTTTCTCG-AATTAAAGTTTTC
* *
2406017 AAAAAATAGTTTTGCGGAAAAGTTGAAAGTATGAATTTTCCTTAAAAATAAATTTTCAAAAAAGG
1 -AAAAATAGTTTTGAGG-AAAGTTGAAAGTATCAA-TTTCCTT-AAAATAAATTTTCAAAAAAGG
*
2406082 TTTTTT-G-AATG-TAAAGTATCAATTTTC-CTGAATTAAAAGTTTT-
62 TTTTTTGGAAAAGTTAAAGTATCAATTTTCTC-GAATT-AAAGTTTTC
* * * * * *
2406125 -AAAATCATTTTTGGGGAAAGTTGAAAGTATCAATTT-CTT-AACT-AATTTTTAAAAGA-TTTT
1 AAAAAT-AGTTTTGAGGAAAGTTGAAAGTATCAATTTCCTTAAAATAAATTTTCAAAAAAGGTTT
2406185 TTTGAGGAAAAGTTGAAAGATATCAATTTTCTCGAATTAAAGTTTTC
65 TTT--GGAAAAGTT-AAAG-TATCAATTTTCTCGAATTAAAGTTTTC
2406232 ACAAAATA-TTTTGAGG-AAGTTG-AAGTATTCAATTT
1 A-AAAATAGTTTTGAGGAAAGTTGAAAGTA-TCAATTT
2406267 TTTTTAAAGA
Statistics
Matches: 210, Mismatches: 22, Indels: 45
0.76 0.08 0.16
Matches are distributed among these distances:
100 6 0.03
101 11 0.05
102 3 0.01
103 1 0.00
104 6 0.03
105 9 0.04
106 46 0.22
107 31 0.15
108 6 0.03
109 19 0.09
110 10 0.05
111 1 0.00
112 3 0.01
113 1 0.00
115 15 0.07
116 3 0.01
117 39 0.19
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (107 bp):
AAAAATAGTTTTGAGGAAAGTTGAAAGTATCAATTTCCTTAAAATAAATTTTCAAAAAAGGTTTT
TTGGAAAAGTTAAAGTATCAATTTTCTCGAATTAAAGTTTTC
Found at i:2406376 original size:107 final size:108
Alignment explanation
Indices: 2406183--2406377 Score: 238
Period size: 106 Copynumber: 1.8 Consensus size: 108
2406173 TTAAAAGATT
* * * * *
2406183 TTTTTGAGGAAAAGTTGAAAGATATCAATTTTCTCGAATTAAAGTTTTCACAAAATATTTTGAGG
1 TTTTTAAGGAAAAGTTGAAAGATATCAATTTTCTCGAAATAAAGTTTCCACAAAATATTTTCAGA
* *
2406248 AAGTTGAAGTATTCAATTTTTTTTAAAGATAAATTCAAAGGGA
66 AAATTGAAATATTCAATTTTTTTTAAAGATAAATTCAAAGGGA
*
2406291 TTTTTAAGG-AAAGTTGAAAG-TATCAATTTTCTTGAAA-ATAAGCTTTCCACAAAAAATATTTA
1 TTTTTAAGGAAAAGTTGAAAGATATCAATTTTCTCGAAATA-AAG-TTTCCAC--AAAATATTT-
2406353 TCA-AAAATTGAAATA-TCAATTTTTT
61 TCAGAAAATTGAAATATTCAATTTTTT
2406378 CTGAAATTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
105 1 0.01
106 18 0.24
107 17 0.23
108 18 0.24
109 18 0.24
110 2 0.03
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (108 bp):
TTTTTAAGGAAAAGTTGAAAGATATCAATTTTCTCGAAATAAAGTTTCCACAAAATATTTTCAGA
AAATTGAAATATTCAATTTTTTTTAAAGATAAATTCAAAGGGA
Found at i:2411979 original size:41 final size:40
Alignment explanation
Indices: 2411922--2412060 Score: 199
Period size: 41 Copynumber: 3.4 Consensus size: 40
2411912 GTTAAAGAGT
*
2411922 AATTTATTTTCCAAAGTTTCGT-TGCCTCTGTTTAGAGGAGC
1 AATTTACTTTCCAAAG--TCGTGTGCCTCTGTTTAGAGGAGC
2411963 AATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 AATTTACTTTCCAAAGTCGT-GTGCCTCTGTTTAGAGGAGC
*
2412004 AATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 AATTTAC-TTTCCAAAGTCGT-GTGCCTCTGTTTAGAGGAGC
*
2412046 AATTTACTTTTCAAA
1 AATTTACTTTCCAAA
2412061 AGAGCAATTT
Statistics
Matches: 91, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
39 4 0.04
41 47 0.52
42 40 0.44
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38
Consensus pattern (40 bp):
AATTTACTTTCCAAAGTCGTGTGCCTCTGTTTAGAGGAGC
Found at i:2412034 original size:42 final size:42
Alignment explanation
Indices: 2411944--2412062 Score: 222
Period size: 42 Copynumber: 2.9 Consensus size: 42
2411934 AAAGTTTCGT
*
2411944 TGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
2411985 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
2412027 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG
2412063 AGCAATTTAC
Statistics
Matches: 76, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
41 26 0.34
42 50 0.66
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (42 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGG
Found at i:2412067 original size:20 final size:20
Alignment explanation
Indices: 2412042--2412080 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
2412032 CTGTTTAGAG
2412042 GAGCAATTTACTTTTCAAAA
1 GAGCAATTTACTTTTCAAAA
2412062 GAGCAATTTACTTTTCAAA
1 GAGCAATTTACTTTTCAAA
2412081 GTCATGGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.36
Consensus pattern (20 bp):
GAGCAATTTACTTTTCAAAA
Found at i:2412097 original size:61 final size:62
Alignment explanation
Indices: 2412000--2412123 Score: 223
Period size: 61 Copynumber: 2.0 Consensus size: 62
2411990 CTGTTTAGAG
*
2412000 GAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAA
1 GAGCAATTTACTTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAA
*
2412062 GAGCAATTTACTTTTC-AAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAA
1 GAGCAATTTACTTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAA
2412123 G
1 G
2412124 TCATGGAGCC
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 44 0.73
62 16 0.27
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.36
Consensus pattern (62 bp):
GAGCAATTTACTTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAA
Found at i:2412119 original size:41 final size:42
Alignment explanation
Indices: 2412062--2412148 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
2412052 CTTTTCAAAA
* *
2412062 GAGCAATTTACTTTTC-AAAGTCATGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAAGTCATGGAGCCTCTGATTAGAG
*
2412103 GAGCAATTTATTTTTCAAAAGTCATGGAGCCTCTGATTAGAG
1 GAGCAATTTACTTTTCAAAAGTCATGGAGCCTCTGATTAGAG
2412145 GAGC
1 GAGC
2412149 TTTGTTTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 15 0.36
42 27 0.64
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (42 bp):
GAGCAATTTACTTTTCAAAAGTCATGGAGCCTCTGATTAGAG
Found at i:2412143 original size:103 final size:103
Alignment explanation
Indices: 2411959--2412148 Score: 326
Period size: 103 Copynumber: 1.8 Consensus size: 103
2411949 CTGTTTAGAG
* *
2411959 GAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCG
1 GAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCA
* *
2412024 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAA
66 TGGAGCCTCTGATTAGAGGAGCAATTTACTTTTCAAAA
* *
2412062 GAGCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAGTCA
1 GAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCA
2412127 TGGAGCCTCTGATTAGAGGAGC
66 TGGAGCCTCTGATTAGAGGAGC
2412149 TTTGTTTATG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 81 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (103 bp):
GAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCA
TGGAGCCTCTGATTAGAGGAGCAATTTACTTTTCAAAA
Found at i:2412486 original size:19 final size:19
Alignment explanation
Indices: 2412437--2412506 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 19
2412427 AATGGACTTT
*
2412437 TATTTTTATTTTC-ATTATA
1 TATTTTTATTATCTATTA-A
*
2412456 TATATATT-TTATCTATTAA
1 TAT-TTTTATTATCTATTAA
*
2412475 TATTTTTATTATTTATCT-A
1 TATTTTTATTATCTAT-TAA
*
2412494 TTTTTTTATTATC
1 TATTTTTATTATC
2412507 ATTTATCTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
18 3 0.07
19 30 0.73
20 8 0.20
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTTTTATTATCTATTAA
Found at i:2412487 original size:15 final size:16
Alignment explanation
Indices: 2412443--2412505 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
2412433 CTTTTATTTT
*
2412443 TATTTTCATTA-TATA
1 TATTTTTATTATTATA
2412458 TATATTTTATCTATTA-A
1 TAT-TTTTAT-TATTATA
*
2412475 TATTTTTATTATTTATC
1 TATTTTTATTA-TTATA
2412492 TATTTTT-TTATTAT
1 TATTTTTATTATTAT
2412506 CATTTATCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
15 9 0.22
16 17 0.41
17 13 0.32
18 2 0.05
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTTTATTATTATA
Found at i:2412536 original size:26 final size:22
Alignment explanation
Indices: 2412463--2412527 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
2412453 ATATATATAT
* *
2412463 TTTATCTATTAATATTT-TTATTA
1 TTTATCTATT--TTTTTATTATCA
2412486 TTTATCTATTTTTTTATTATCA
1 TTTATCTATTTTTTTATTATCA
2412508 TTTATCTATTTCTTTTATTA
1 TTTATCTATTT-TTTTATTA
2412528 ATCTAATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.11
22 16 0.42
23 18 0.47
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTATCTATTTTTTTATTATCA
Found at i:2412966 original size:12 final size:12
Alignment explanation
Indices: 2412946--2413063 Score: 64
Period size: 12 Copynumber: 9.8 Consensus size: 12
2412936 TGTTTAATAT
2412946 TTTTATTTTTTA
1 TTTTATTTTTTA
*
2412958 TTTT-GTTTTTA
1 TTTTATTTTTTA
*
2412969 TTTTATTATTTA
1 TTTTATTTTTTA
*
2412981 -TTTATTTATTA
1 TTTTATTTTTTA
* ** *
2412992 TTATATTAGGATTG
1 TTTTATT--TTTTA
*
2413006 TTTAATATTTTT-
1 TTTTAT-TTTTTA
*
2413018 TTTAATTTTTTA
1 TTTTATTTTTTA
*
2413030 TTTTCGTTTTTTA
1 TTTT-ATTTTTTA
*
2413043 TTTTTTATTTTTA
1 TTTTAT-TTTTTA
2413056 -TTTATTTT
1 TTTTATTTT
2413064 ATTTTCTTTA
Statistics
Matches: 82, Mismatches: 16, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
11 27 0.33
12 28 0.34
13 19 0.23
14 7 0.09
15 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.75
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:2413004 original size:68 final size:71
Alignment explanation
Indices: 2412896--2413065 Score: 241
Period size: 68 Copynumber: 2.5 Consensus size: 71
2412886 AAGTTTTTTT
2412896 TTTTTTCA-TTTTTATTTATTTA-TTATTATTATATTAGGATTGTTTAATA-TTTTT-ATTTTTT
1 TTTTTT-ATTTTTTATTTATTTATTTATTATTATATTAGGATTGTTTAATATTTTTTAATTTTTT
2412957 ATTTT-G
65 ATTTTCG
2412963 -TTTTTATTTTATTATTTATTTATTTATTATTATATTAGGATTGTTTAATATTTTTTTTAATTTT
1 TTTTTTATTTT-TTATTTATTTATTTATTATTATATTAGGATTGTTTAATA--TTTTTTAATTTT
2413027 TTATTTTCG
63 TTATTTTCG
2413036 TTTTTTATTTTTTA-TT-TTTATTTATT-TTAT
1 TTTTTTATTTTTTATTTATTTATTTATTATTAT
2413066 TTTCTTTAAA
Statistics
Matches: 94, Mismatches: 0, Indels: 15
0.86 0.00 0.14
Matches are distributed among these distances:
65 1 0.01
66 8 0.09
67 11 0.12
68 27 0.29
70 4 0.04
71 15 0.16
72 14 0.15
73 4 0.04
74 10 0.11
ACGTcount: A:0.22, C:0.01, G:0.05, T:0.72
Consensus pattern (71 bp):
TTTTTTATTTTTTATTTATTTATTTATTATTATATTAGGATTGTTTAATATTTTTTAATTTTTTA
TTTTCG
Found at i:2413039 original size:20 final size:20
Alignment explanation
Indices: 2413016--2413053 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2413006 TTTAATATTT
2413016 TTTTTAATTTTTTATTTTCG
1 TTTTTAATTTTTTATTTTCG
*
2413036 TTTTTTATTTTTTATTTT
1 TTTTTAATTTTTTATTTT
2413054 TATTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTTAATTTTTTATTTTCG
Found at i:2413117 original size:20 final size:19
Alignment explanation
Indices: 2413081--2413125 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 19
2413071 TTAAATAAAG
2413081 TTAAAAAAAATATTTTTCC
1 TTAAAAAAAATATTTTTCC
*
2413100 TTAAAAATAA-ATTTTT--
1 TTAAAAAAAATATTTTTCC
2413116 TTAAAAAAAA
1 TTAAAAAAAA
2413126 AGTTTTGAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.38
18 6 0.25
19 9 0.38
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAAAAAAAATATTTTTCC
Found at i:2413131 original size:16 final size:17
Alignment explanation
Indices: 2413081--2413131 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
2413071 TTAAATAAAG
2413081 TTAAAAAAAATATTTTTCC
1 TTAAAAAAAA-ATTTTT-C
*
2413100 TTAAAAATAAATTTTT-
1 TTAAAAAAAAATTTTTC
2413116 TTAAAAAAAAAGTTTT
1 TTAAAAAAAAA-TTTT
2413132 GAGGAAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 10 0.34
17 4 0.14
18 6 0.21
19 9 0.31
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAAAAAAAAATTTTTC
Found at i:2413302 original size:57 final size:58
Alignment explanation
Indices: 2413114--2413507 Score: 417
Period size: 57 Copynumber: 6.8 Consensus size: 58
2413104 AAATAAATTT
* * * * * * ** *
2413114 TTTTAAAAAAAAAGTTTTGAGGAAAAGTCGAAAGTATCAATTTTTCTTAAAAATAAA-
1 TTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
* *
2413171 TTTTCAAAAAAGGTTTTTTTTGAGGAAAAGTT-AAAGTATCAATTTTCCTCGAAATTAAAG
1 TTTTCAAAAAA---TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
*
2413231 TTTTCAAAAAATATTTTCGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
1 TTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
* *
2413289 TTTTC-AAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATT-AAG
1 TTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
* * ** *
2413345 CTTTCCACAAAAAAATATTTTTAGGGGAAAAGTTGAAAGTATCAATGTTCCTTAAAAAT-AAG
1 -TTT--TC-AAAAAATATTTTT-GGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
* * * * *
2413407 TTTTC-AAAAATGAATTTTTGAGAAAAAATTGAAAGTATCAATTTTTCTCGAAATCAAAG
1 TTTTCAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
*
2413466 -TTTCAAAAAATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 TTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
2413508 TCTTGCAAAA
Statistics
Matches: 288, Mismatches: 34, Indels: 31
0.82 0.10 0.09
Matches are distributed among these distances:
56 29 0.10
57 80 0.28
58 64 0.22
59 40 0.14
60 25 0.09
61 15 0.05
62 35 0.12
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (58 bp):
TTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
Found at i:2413387 original size:177 final size:172
Alignment explanation
Indices: 2413134--2413517 Score: 475
Period size: 177 Copynumber: 2.2 Consensus size: 172
2413124 AAAGTTTTGA
* * * ** * *
2413134 GGAAAAGTCGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAGGTTTTTTTTGAGGAAA
1 GGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAATTTCCAAAAAAAATATTTTTAGAGGAAA
* * * * * *
2413199 AGTTAAAGTATCAATTTTCCTCGAAATTAAAGTTTTCAAAAA-ATATTTTCGGGGAAAAGTTGAA
66 AGTTAAAGTATCAATGTTCCTCAAAAAT-AAGTTTTCAAAAATA-ATTTTCGAGAAAAAATTGAA
* *
2413263 AGTATCAATTTTCCTCGAAATTAAAGTTTTC-AAAAATATTTTTG
129 AGTATCAATTTTCCTCGAAATCAAAG-TTTCAAAAAATATTTTAG
* * * *
2413307 GAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAGCTTTCCACAAAAAAATATTTTTAGGGG
1 G-GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAA-ATTTCCA-AAAAAAATATTTTTAGAGG
* *
2413372 AAAAGTTGAAAGTATCAATGTTCCTTAAAAATAAGTTTTCAAAAATGAATTTTTGAGAAAAAATT
63 AAAAGTT-AAAGTATCAATGTTCCTCAAAAATAAGTTTTCAAAAAT-AATTTTCGAGAAAAAATT
*
2413437 GAAAGTATCAATTTTTCTCGAAATCAAAGTTTCAAAAAATATTTTAG
126 GAAAGTATCAATTTTCCTCGAAATCAAAGTTTCAAAAAATATTTTAG
2413484 GGAAAAGTTGAAAGTATCAATTTTTCTTGCAAAA
1 GGAAAAGTTGAAAGTATCAATTTTTCTTG-AAAA
2413518 AAACAGTCAT
Statistics
Matches: 179, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
173 1 0.01
174 31 0.17
175 5 0.03
176 65 0.36
177 76 0.42
178 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (172 bp):
GGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAATTTCCAAAAAAAATATTTTTAGAGGAAA
AGTTAAAGTATCAATGTTCCTCAAAAATAAGTTTTCAAAAATAATTTTCGAGAAAAAATTGAAAG
TATCAATTTTCCTCGAAATCAAAGTTTCAAAAAATATTTTAG
Found at i:2415418 original size:50 final size:51
Alignment explanation
Indices: 2415332--2415436 Score: 140
Period size: 50 Copynumber: 2.1 Consensus size: 51
2415322 AATGATGCAA
* * * *
2415332 ATGATAATGTTAAAGCATGATCATGAAAAATAATGCATCGAATGAAATAAT
1 ATGATAATGTTAAAACATGAGCATGAAAAATAATGCATAGAATAAAATAAT
* * *
2415383 ATGATAATGTTAAAACATGAGGATG-AAAATGATGCATAGAATAAAATGAT
1 ATGATAATGTTAAAACATGAGCATGAAAAATAATGCATAGAATAAAATAAT
2415433 ATGA
1 ATGA
2415437 AAGATGCATA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
50 25 0.53
51 22 0.47
ACGTcount: A:0.50, C:0.06, G:0.18, T:0.27
Consensus pattern (51 bp):
ATGATAATGTTAAAACATGAGCATGAAAAATAATGCATAGAATAAAATAAT
Found at i:2415432 original size:45 final size:49
Alignment explanation
Indices: 2415330--2415433 Score: 117
Period size: 51 Copynumber: 2.2 Consensus size: 49
2415320 AGAATGATGC
* *
2415330 AAATGATAATGTTAAAGCATGATCATGAAAAATAATGCATCGAATGAAATA
1 AAATGATAATGTTAAAACATGAGCATGAAAAATAATGCAT--AATGAAATA
* * *
2415381 ATATGATAATGTTAAAACATGAGGATG-AAAATGATGCAT-A-G-AATA
1 AAATGATAATGTTAAAACATGAGCATGAAAAATAATGCATAATGAAATA
2415426 AAATGATA
1 AAATGATA
2415434 TGAAAGATGC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
45 11 0.23
46 1 0.02
47 1 0.02
50 11 0.23
51 23 0.49
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.26
Consensus pattern (49 bp):
AAATGATAATGTTAAAACATGAGCATGAAAAATAATGCATAATGAAATA
Found at i:2420540 original size:6 final size:6
Alignment explanation
Indices: 2420529--2420562 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
2420519 AAAAGAGAAT
*
2420529 AAATTA AAATTA AAATCAA AAATTA AAATTA AAA
1 AAATTA AAATTA AAAT-TA AAATTA AAATTA AAA
2420563 AATTTGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (6 bp):
AAATTA
Found at i:2420552 original size:13 final size:13
Alignment explanation
Indices: 2420534--2420563 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2420524 AGAATAAATT
2420534 AAAATTAAAATCA
1 AAAATTAAAATCA
*
2420547 AAAATTAAAATTA
1 AAAATTAAAATCA
2420560 AAAA
1 AAAA
2420564 ATTTGTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATTAAAATCA
Found at i:2423360 original size:235 final size:232
Alignment explanation
Indices: 2422846--2425056 Score: 1058
Period size: 235 Copynumber: 9.5 Consensus size: 232
2422836 AAAGTAATGG
* * * * * *
2422846 AAAGTAAAAATAACCAAAAGAAGATATTATTGTAA-AGTAAATAATTAT-ATTA-ATATCGTAAA
1 AAAGTAAGAATAATCATAAGAATATATTATTATAACA-TAAATAATTATGATGACATA---TAAA
* * * *
2422908 ATTTTAATTGATCACTTTTCTTCTGTATATATATAAGAAAAATAGCTAAAAATTAAAAAACAAAT
62 ATTTTAATTAATTA-TTTT-TT-TGTAAATATATAAG-AAAATAGCTAAAAATTAAAAAATAAAT
* * * * *
2422973 TGATAATGTAAACAAGT--AAGAAATC-TAAAATTAGTATAAATT-ATTGTAAAATGGGTAAGAA
123 TGGTAATGTAAACAAGTGAAAAAAAACATAAAATTAGTATAATTTGA-TGTAAAATGGGTAAAAA
* * * * * *
2423034 GTATAGTAATACACTTAAAAAGAGTTATGACAATTTTAACTATAGTGA
187 GTTTCGTAATACA-TTAAAAAAAGTTATGACAATTCTAAATATAAT-A
** * *
2423082 AAAGTAAGAATAATTGTAAAAATATATTATTATAACTTAAATAATTATGATGACACTATAAAATT
1 AAAGTAAGAATAATCATAAGAATATATTATTATAACATAAATAATTATGATGACA-TATAAAATT
** * *
2423147 TTAATTAATTATTATTTTTGTGTATATA-AAGAAAATAGCTACAAATTAAAAAATAAATTGGCAA
65 TTAATTAATTATT-TTTTTGTAAATATATAAGAAAATAGCTAAAAATTAAAAAATAAATTGGTAA
* * ** ** *
2423211 TGCAAACAAGTGAAAAAAAACATAAAATTAATACCATTTGATGTAAAATAAGTACAAAGTTTCGT
129 TGTAAACAAGTGAAAAAAAACATAAAATTAGTATAATTTGATGTAAAATGGGTAAAAAGTTTCGT
* * * *
2423276 AACACATTAGGAAATAGTTATGATAATTCTAAATATAATA
194 AATACATTA-AAAAAAGTTATGACAATTCTAAATATAATA
* * * * *
2423316 AAAGATAAGAACAATCATAAGAAGATATTATTGTAACATAAATAATTATGTTTGCCATATAAAAT
1 AAAG-TAAGAATAATCATAAGAATATATTATTATAACATAAATAATTATG-ATGACATATAAAAT
* * * *
2423381 TTTAACTAATTATTATTTTT-TAAATATATAGGAAAA-ATGACTAAAAATTGAAAAA-AAATAGG
64 TTTAATTAATTATT-TTTTTGTAAATATATAAGAAAATA-G-CTAAAAATTAAAAAATAAATTGG
* * * *
2423443 TAATATAAGA-AAGTG-AGAAAAATATAAAATTAGTATAA-TTAATGTAAAATGGGTAAAAAAGT
126 TAATGTAA-ACAAGTGAAAAAAAACATAAAATTAGTATAATTTGATGTAAAATGGGT-AAAAAGT
* * * * *
2423505 ATCGTAATACACTAAGAAAAAATTATAACAATTCTAAATATAATT
189 TTCGTAATACATTAA-AAAAAGTTATGACAATTCTAAATATAATA
* * * * * *
2423550 AAAGTAAGAATAATCATAA-AAAAT-TTATTGTAAAATAAATAATTAAGTTGTC-TACGTAAAAT
1 AAAGTAAGAATAATCATAAGAATATATTATTATAACATAAATAATTATGATGACATA--TAAAAT
* * *
2423612 TTTAATTAATT-CTTTTTTGTAGATATAT-A-AAAATAGCTAAAAATTAAAAAAATATATTGGTA
64 TTTAATTAATTATTTTTTTGTAAATATATAAGAAAATAGCTAAAAATT-AAAAAATAAATTGGTA
* * * * **
2423674 ACT-TTAACAAGT-AAGAAAAACATAAAATTAGTATAATTTGATATAAATTGGGTATGAA-TTGT
128 A-TGTAAACAAGTGAAAAAAAACATAAAATTAGTATAATTTGATGTAAAATGGGTAAAAAGTT-T
** * * * * *
2423736 CGTAATATGTTAAAAGAGAGTTATGACTATTCCAAACATAATGG
191 CGTAATACATTAAAA-AAAGTTATGACAATTCTAAATATAAT-A
* * * * * *
2423780 AAATTAAGAACAA-CTATAATAATATATTATTAAAACATAAATAATTAT-ATTAGCAATGTAAAA
1 AAAGTAAGAATAATC-ATAAGAATATATTATTATAACATAAATAATTATGATGA-C-ATATAAAA
* * * * *
2423843 TTTTAATTAATTATTGTTTTGGAAATATCTAAGAAAAATAGCTAGAAATTTAAAAAATAAGTTGG
63 TTTTAATTAATTATTTTTTTGTAAATATATAAG-AAAATAGCTA-AAAATTAAAAAATAAATTGG
* * * * ** * * * * * *
2423908 T-A-G-CAATAAGTGAGAACAAATGTAAAATTAATATTATTTGACGTAACATGAGTAAAAAATGT
126 TAATGTAAACAAGTGAAAAAAAACATAAAATTAGTATAATTTGATGTAAAATGGGTAAAAAGT-T
*
2423970 T-GTAACACATTAAAAAAAGTTATGACAATTCTAAATATAATAA
190 TCGTAATACATTAAAAAAAGTTATGACAATTCTAAATATAAT-A
* * * * * *
2424013 AAAGTAAAAATAA-CTACAAGAATATATTATCATAA-AGTAAATAATTATGTTGATAATGTAAAA
1 AAAGTAAGAATAATC-ATAAGAATATATTATTATAACA-TAAATAATTATGATGA-CATATAAAA
* * ** * *
2424076 TTTTAATTAAATACTATTCCTGTAAATATATAAGAAAATAGCTAAAAATTAAAAAAGAAATTGAT
63 TTTTAATTAATTA-TTTTTTTGTAAATATATAAGAAAATAGCTAAAAATTAAAAAATAAATTGGT
** * * ** * * * **
2424141 AACATAAACAAAAT-AGAAGTAATAT-AACTGTAGTATCATTTGGA-GTAAAATGAATAATAAA-
127 AATGTAAAC-AAGTGAAAAAAAACATAAAAT-TAGTATAATTT-GATGTAAAATGGGTAA-AAAG
** * * *
2424202 TGTT-GTAATAC-TCCAAAAAAGCTATAACAATTTTAAATATTATAATGA
188 T-TTCGTAATACATTAAAAAAAGTTATGACAATTCT-AA-A-TATAAT-A
* ** * * ** * * * * *
2424250 AAAGTAA-AAGCAATTGTAAAAAATATATTATTGTAATGTAAACAATTATAACGATAATATAAAG
1 AAAGTAAGAA-TAATCAT-AAGAATATATTATTATAACATAAATAATTATGATGA-CATATAAAA
* * * * * *
2424314 TTTTAATTAATTATTGTTATTG--AATATATATAGGAAATAGTTAAAAATTAACACATAAATTGA
63 TTTTAATTAATTATT-TTTTTGTAAATATATA-AGAAAATAGCTAAAAATTAAAAAATAAATTGG
** * * * * * * ** ** *** * *
2424377 TAACCTTAATAGGTGAGAAGAAATATAAAATTAAAACCATTTGGCATAAAATGGGTAATAAGTGT
126 TAATGTAAACAAGTGAAAAAAAACATAAAATTAGTATAATTTGATGTAAAATGGGTAAAAAGTTT
* * * * * *
2424442 CATTATACATTAAGAAAGAGATATGATAATTCTAAATGTAATGA
191 CGTAATACATTAA-AAAAAGTTATGACAATTCTAAATATAAT-A
* * * * * * * *
2424486 AAAATAAGAACAAAT-GTAAGAAGATATTATTGTAACGTAAATATTTAAG-TAGACAATATAAAA
1 AAAGTAAGAA-TAATCATAAGAATATATTATTATAACATAAATAATTATGAT-GAC-ATATAAAA
* * * * * *
2424549 TTTTAATTAATTATTATTTTTATAAATATATAAGAAAAATAACTAATAATTACAAAACAAATAGG
63 TTTTAATTAATTATT-TTTTTGTAAATATATAAG-AAAATAGCTAAAAATTAAAAAATAAATTGG
** * * * *
2424614 TAACATAAACAAGT-AAGAAAAGACATAAAATTTGTATTATTTGATGTAAAATTGGTAAGAAAG-
126 TAATGTAAACAAGTGAA-AAAAAACATAAAATTAGTATAATTTGATGTAAAATGGGTAA-AAAGT
* * * **
2424677 --AGT--T--A-T--AACAA-TTCT-A-AA--C-GCA-AT-ATA
189 TTCGTAATACATTAAAAAAAGTTATGACAATTCTAAATATAATA
** * * * * * *
2424704 GGAG-AATAATAAACATAAGAAAATATTATTATAATATAAATAATTAAGTAGAT-A-ATGTAAAC
1 AAAGTAAGAATAATCATAAGAATATATTATTATAACATAAATAATT-A-T-GATGACATATAAAA
** * *
2424766 TTTTAATCGATTATTTCTTTTATAAATATATAAGAAAATAGCTAAAAA-TAAAAACAAACAATTA
63 TTTTAATTAATTATTT-TTTTGTAAATATATAAGAAAATAGCTAAAAATTAAAAA-ATA-AATT-
* * * * * *
2424830 GGTAATGAAAACAAGTGAGAAAAATC-TAAAATTTGTATAATTTG-TGATAAAATGAGTAAGAAG
124 GGTAATGTAAACAAGTGAAAAAAAACATAAAATTAGTATAATTTGATG-TAAAATGGGTAAAAAG
* * * * ** * *
2424893 AATT-GTGACACACTATAAAAGTGTTATAACAATTCTAAATGTAATAA
188 -TTTCGTAATACATTA-AAAAAAGTTATGACAATTCTAAATATAAT-A
* ** * * * * * ** * *
2424940 AAAGTAAGAACAATTGTAAAAAGATATCACTGTAATGTAAATTAA--AT-A-GGCAATGTAAAAT
1 AAAGTAAGAATAATCATAAGAATATATTATTATAACATAAA-TAATTATGATGAC-ATATAAAAT
* *
2425001 TTTAATT-ATTCATTGTTTTTGTAAATGTATAAACAAAATAGCTAAAAATTAAAAAA
64 TTTAATTAATT-ATT-TTTTTGTAAATATAT-AAGAAAATAGCTAAAAATTAAAAAA
2425057 AACAAAGAAA
Statistics
Matches: 1504, Mismatches: 350, Indels: 243
0.72 0.17 0.12
Matches are distributed among these distances:
215 5 0.00
216 22 0.01
217 95 0.06
218 21 0.01
219 6 0.00
220 2 0.00
221 2 0.00
222 1 0.00
223 1 0.00
224 3 0.00
225 1 0.00
226 2 0.00
227 14 0.01
228 17 0.01
229 80 0.05
230 45 0.03
231 43 0.03
232 99 0.07
233 145 0.10
234 206 0.14
235 271 0.18
236 151 0.10
237 191 0.13
238 65 0.04
239 16 0.01
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (232 bp):
AAAGTAAGAATAATCATAAGAATATATTATTATAACATAAATAATTATGATGACATATAAAATTT
TAATTAATTATTTTTTTGTAAATATATAAGAAAATAGCTAAAAATTAAAAAATAAATTGGTAATG
TAAACAAGTGAAAAAAAACATAAAATTAGTATAATTTGATGTAAAATGGGTAAAAAGTTTCGTAA
TACATTAAAAAAAGTTATGACAATTCTAAATATAATA
Found at i:2423761 original size:463 final size:464
Alignment explanation
Indices: 2422936--2424131 Score: 1185
Period size: 463 Copynumber: 2.6 Consensus size: 464
2422926 TCTTCTGTAT
* * *
2422936 ATATATAAGAAAAATAGCTAAAAATTAAAAAACAAATTGATAATGTAAACAAGT-A-AGAAATCT
1 ATATATAAGAAAAATAGCTAAAAATTAAAAAA-AAATTGGTAATGTAAA-AAGTGAGAAAAATAT
* * *
2422999 AAAATTAGTATAAATTATTGTAAAATGGGT-AAGAAGTATAGTAATACACTTAAAAAGAGTTATG
64 AAAATTAGTAT-AATTAATGTAAAATGGGTAAAAAAGTAT-GTAATACAC-TAAAAAAAGTTATG
* * * * * **
2423063 ACAATTTTAACTATAGTGAAAAGTAAGAATAATTGTAAAAATATATTATTATAACTTAAATAATT
126 ACAATTCTAAATATAATAAAAAGTAAGAATAA-TCTAAAAATATATTATTATAAAATAAATAATT
* * * * * *
2423128 ATGATGACACTATAAAATTTTAATTAATTATTATTTTTGT-GTATATAAAGAAAATAGCTACAAA
190 ATGTTGTCAC-GTAAAATTTTAATTAATT-CTATTTTTGTAG-ATATATAGAAAATAGCTAAAAA
* *
2423192 TT-AAAAAATAAATTGGCAATGCAAACAAGTGAAAAAAAACATAAAATTAATACCATTTGATGTA
252 TTAAAAAAATAAATTGGCAATGCAAACAAGTGAAAAAAAACATAAAATTAATACAATTTGATATA
* * * *
2423256 AAATAAGTACAAAGTTTCGTAACACATTAGGAAATAGTTATGA-TAATTCTAAATATAAT-AAAA
317 AAATAAGTACAAAGTTTCGTAACACATTAGAAAAGAGTTATGACT-ATTCCAAACATAATGAAAA
** * * *
2423319 GATAAGAACAA-TCATAAGAAGATATTATTGTAACATAAATAATTATGTTTGCCATATAAAATTT
381 -ATAAGAACAACT-ATAAGAAGATATTATTAAAACATAAATAATTATATTAGCAATATAAAATTT
**
2423383 TAACTAATTATTATTTTTTAA
444 TAACTAATTATTATTTTGGAA
* * * *
2423404 ATATATAGGAAAAAT-GACTAAAAATTGAAAAAAAATAGGTAATATAAGAAAGTGAGAAAAATAT
1 ATATATAAGAAAAATAG-CTAAAAATTAAAAAAAAATTGGTAATGTAA-AAAGTGAGAAAAATAT
* *
2423468 AAAATTAGTATAATTAATGTAAAATGGGTAAAAAAGTATCGTAATACACTAAGAAAAAATTATAA
64 AAAATTAGTATAATTAATGTAAAATGGGTAAAAAAGTAT-GTAATACACTAA-AAAAAGTTATGA
* *
2423533 CAATTCTAAATATAAT-TAAAGTAAGAATAATCATAAAAA-AT-TTATTGTAAAATAAATAATTA
127 CAATTCTAAATATAATAAAAAGTAAGAATAATC-TAAAAATATATTATTATAAAATAAATAATTA
*
2423595 AGTTGTCTACGTAAAATTTTAATTAATTCT-TTTTTGTAGATATATA-AAAATAGCTAAAAATTA
191 TGTTGTC-ACGTAAAATTTTAATTAATTCTATTTTTGTAGATATATAGAAAATAGCTAAAAATTA
* * ** * * *
2423658 AAAAAATATATTGGTAACT-TTAACAAGT-AAGAAAAACATAAAATTAGTATAATTTGATATAAA
255 AAAAAATAAATTGGCAA-TGCAAACAAGTGAAAAAAAACATAAAATTAATACAATTTGATATAAA
* ** ** * ** * *
2423721 TTGGGTATGAA-TTGTCGTAATATGTTA-AAAGAGAGTTATGACTATTCCAAACATAATGGAAAT
319 ATAAGTACAAAGTT-TCGTAACACATTAGAAA-AGAGTTATGACTATTCCAAACATAATGAAAAA
* * *
2423784 TAAGAACAACTATAATAATATATTATTAAAACATAAATAATTATATTAGCAATGTAAAATTTTAA
382 TAAGAACAACTATAAGAAGATATTATTAAAACATAAATAATTATATTAGCAATATAAAATTTTAA
* *
2423849 TTAATTATTGTTTTGGAA
447 CTAATTATTATTTTGGAA
* * * * * *
2423867 ATATCTAAGAAAAATAGCTAGAAATTTAAAAAATAAGTTGGT-A-GCAATAAGTGAGAACAAATG
1 ATATATAAGAAAAATAGCTA-AAAATTAAAAAA-AAATTGGTAATGTAAAAAGTGAGAA-AAATA
* * * * * * * *
2423930 TAAAATTAATATTATTTGACGTAACATGAGTAAAAAATGT-TGTAACACATTAAAAAAAGTTATG
63 TAAAATTAGTA-TAATTAATGTAAAATGGGTAAAAAA-GTATGTAATACACTAAAAAAAGTTATG
* * *
2423994 ACAATTCTAAATATAATAAAAAGTAAAAATAA-CTACAAGAATATATTATCATAAAGTAAATAAT
126 ACAATTCTAAATATAATAAAAAGTAAGAATAATCTA-AA-AATATATTATTATAAAATAAATAAT
* * * ** *
2424058 TATGTTGATAATGTAAAATTTTAATTAAATACTATTCCTGTAAATATATAAGAAAATAGCTAAAA
189 TATGTTG-TCACGTAAAATTTTAATT-AATTCTATTTTTGTAGATATAT-AGAAAATAGCTAAAA
2424123 ATTAAAAAA
251 ATTAAAAAA
2424132 GAAATTGATA
Statistics
Matches: 601, Mismatches: 95, Indels: 63
0.79 0.13 0.08
Matches are distributed among these distances:
461 2 0.00
462 42 0.07
463 207 0.34
464 75 0.12
465 48 0.08
466 45 0.07
467 34 0.06
468 70 0.12
469 78 0.13
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (464 bp):
ATATATAAGAAAAATAGCTAAAAATTAAAAAAAAATTGGTAATGTAAAAAGTGAGAAAAATATAA
AATTAGTATAATTAATGTAAAATGGGTAAAAAAGTATGTAATACACTAAAAAAAGTTATGACAAT
TCTAAATATAATAAAAAGTAAGAATAATCTAAAAATATATTATTATAAAATAAATAATTATGTTG
TCACGTAAAATTTTAATTAATTCTATTTTTGTAGATATATAGAAAATAGCTAAAAATTAAAAAAA
TAAATTGGCAATGCAAACAAGTGAAAAAAAACATAAAATTAATACAATTTGATATAAAATAAGTA
CAAAGTTTCGTAACACATTAGAAAAGAGTTATGACTATTCCAAACATAATGAAAAATAAGAACAA
CTATAAGAAGATATTATTAAAACATAAATAATTATATTAGCAATATAAAATTTTAACTAATTATT
ATTTTGGAA
Found at i:2423816 original size:25 final size:24
Alignment explanation
Indices: 2423782--2423831 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 24
2423772 CATAATGGAA
2423782 ATTAAGAACAACTATAATAA-TATATT
1 ATTAAGAAC-A-TA-AATAATTATATT
2423808 ATTAA-AACATAAATAATTATATT
1 ATTAAGAACATAAATAATTATATT
2423831 A
1 A
2423832 GCAATGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 5 0.22
23 9 0.39
24 1 0.04
25 3 0.13
26 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (24 bp):
ATTAAGAACATAAATAATTATATT
Found at i:2426141 original size:18 final size:17
Alignment explanation
Indices: 2426096--2426133 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
2426086 GTTGGTAGGA
2426096 TTTTATGAAAACTATTT
1 TTTTATGAAAACTATTT
2426113 TTTTATGAAAACTATTT
1 TTTTATGAAAACTATTT
2426130 TTTT
1 TTTT
2426134 TCATAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTTATGAAAACTATTT
Found at i:2426190 original size:52 final size:51
Alignment explanation
Indices: 2426113--2426224 Score: 163
Period size: 52 Copynumber: 2.2 Consensus size: 51
2426103 AAAACTATTT
**
2426113 TTTTATGAAAACTATTTTTTTTCATAAAAATTAGGTTATGAAATTT-ATCAAA
1 TTTTAT-AAAACTATTTTTTTTCATAAAAATTACATTATGAAATTTGA-CAAA
2426165 TTTTATAAAACTATTTTTATTTCATAAAAATTACATTATGAAATTTGACAAA
1 TTTTATAAAACTATTTTT-TTTCATAAAAATTACATTATGAAATTTGACAAA
*
2426217 TTTCATAA
1 TTTTATAA
2426225 CCTAATTTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
51 12 0.22
52 42 0.76
53 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (51 bp):
TTTTATAAAACTATTTTTTTTCATAAAAATTACATTATGAAATTTGACAAA
Found at i:2430725 original size:17 final size:16
Alignment explanation
Indices: 2430705--2430737 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
2430695 AGCAAACAAA
2430705 AAAAAAAAGAATGAAAT
1 AAAAAAAAGAA-GAAAT
2430722 AAAAAAAAGAAGAAAT
1 AAAAAAAAGAAGAAAT
2430738 TGATGTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (16 bp):
AAAAAAAAGAAGAAAT
Found at i:2431052 original size:12 final size:13
Alignment explanation
Indices: 2431035--2431067 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
2431025 AAGCAAAAAA
2431035 AAAAAAAGT-AAG
1 AAAAAAAGTGAAG
*
2431047 AAAAAAAATGAAG
1 AAAAAAAGTGAAG
2431060 AAAAAAAG
1 AAAAAAAG
2431068 ATTTAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (13 bp):
AAAAAAAGTGAAG
Found at i:2432302 original size:45 final size:45
Alignment explanation
Indices: 2432253--2432356 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
2432243 AACGAGAACA
* * * * *
2432253 TTTGAAATTTTGGATGTGAATCTTTAAAGTTTTTAAATGTGAATC
1 TTTGAAATTTTGGATGTAAATCTCTAAAATTTTCAAATGAGAATC
* * *
2432298 TTTGATATTTCGGGTGTAAATCTCTAAAATTTTCAAATGAGAATC
1 TTTGAAATTTTGGATGTAAATCTCTAAAATTTTCAAATGAGAATC
*
2432343 TTTG-AATTATGGAT
1 TTTGAAATTTTGGAT
2432357 ATAAGACCTT
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
44 6 0.13
45 41 0.87
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (45 bp):
TTTGAAATTTTGGATGTAAATCTCTAAAATTTTCAAATGAGAATC
Found at i:2432575 original size:18 final size:17
Alignment explanation
Indices: 2432552--2432610 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
2432542 GCGAACCTAA
2432552 AATTCTTACAAAATTTTG
1 AATTCTTAC-AAATTTTG
**
2432570 AATTCTTACAAA-GCTG
1 AATTCTTACAAATTTTG
2432586 AAATTCTTACAAATATTTG
1 -AATTCTTACAAAT-TTTG
2432605 AATTCT
1 AATTCT
2432611 AACGAATCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 2 0.06
17 15 0.44
18 15 0.44
19 2 0.06
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.41
Consensus pattern (17 bp):
AATTCTTACAAATTTTG
Found at i:2432629 original size:35 final size:35
Alignment explanation
Indices: 2432543--2432629 Score: 104
Period size: 35 Copynumber: 2.5 Consensus size: 35
2432533 GAAATTCTTG
*
2432543 CGAACCTAAAATTCTTACAAAATTTTGAATTCTTA
1 CGAACCTAAAATTCTTACAAAATTTTGAATTCTAA
* * *
2432578 CAAAGCTGAAATTCTTAC-AAATATTTGAATTCTAA
1 CGAACCTAAAATTCTTACAAAAT-TTTGAATTCTAA
* *
2432613 CGAATCTAAAAGTCTTA
1 CGAACCTAAAATTCTTA
2432630 AATCTTTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 4 0.09
35 39 0.91
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.34
Consensus pattern (35 bp):
CGAACCTAAAATTCTTACAAAATTTTGAATTCTAA
Found at i:2432854 original size:71 final size:69
Alignment explanation
Indices: 2432605--2432871 Score: 207
Period size: 71 Copynumber: 3.8 Consensus size: 69
2432595 CAAATATTTG
* * * * * *
2432605 AATTCTAACGAATCTAAAAGTC-T-TAAATCTTTAAAGTCTTGTGAATTTTTAAAATTATTGCAA
1 AATTCTTACGAATCTAAAAGTCTTGTAAATCTTTGAAGTCTTGCGAATCTTT-GAATTATTAC-A
*
2432668 AATTGA
64 AACTGA
* ** * * * * *
2432674 ATTTCTTGTGAATCTGAAAGACTTGTAAATCTTTCAAGTCTTGCTAATCTTTGAATTCTTACAAA
1 AATTCTTACGAATCTAAAAGTCTTGTAAATCTTTGAAGTCTTGCGAATCTTTGAATTATTACAAA
*
2432739 CCTAA
66 -CTGA
* * * * *
2432744 AATTCTTACAAATTTGAAGGTCTTGCAAAAT-TTTGAAGTCTTGCGAATCTTTGACATTATTACG
1 AATTCTTACGAATCTAAAAGTCTTG-TAAATCTTTGAAGTCTTGCGAATCTTTGA-ATTATTAC-
2432808 AAACTGA
63 AAACTGA
* * * * * * *
2432815 AATTCTTATGAATCTAAAAGTCTTTTGAATTTTTGAAGTCTTACAAATCTTTAAATT
1 AATTCTTACGAATCTAAAAGTCTTGTAAATCTTTGAAGTCTTGCGAATCTTTGAATT
2432872 CTTGTGAACC
Statistics
Matches: 153, Mismatches: 38, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
69 19 0.12
70 55 0.36
71 76 0.50
72 3 0.02
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (69 bp):
AATTCTTACGAATCTAAAAGTCTTGTAAATCTTTGAAGTCTTGCGAATCTTTGAATTATTACAAA
CTGA
Found at i:2432993 original size:69 final size:69
Alignment explanation
Indices: 2432920--2433048 Score: 195
Period size: 69 Copynumber: 1.9 Consensus size: 69
2432910 CAAATCTTTG
* * *
2432920 AATTCTTGTGAACCTGAAATTCTTGCGAATCTGAAAGTCTTGCAAATCTTTGAATTCTTGTAAAC
1 AATTCTTGTGAACCTAAAATTCTTGCGAATCTAAAAGTCTTGCAAATCTTTAAATTCTTGTAAAC
2432985 CTAA
66 CTAA
* * * *
2432989 AATTCTTGTGAATCTAAAATTCTTGTGAATCTAAAAGTTTTGCGAATCTTTAAATTCTTG
1 AATTCTTGTGAACCTAAAATTCTTGCGAATCTAAAAGTCTTGCAAATCTTTAAATTCTTG
2433049 CAAAAGTGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (69 bp):
AATTCTTGTGAACCTAAAATTCTTGCGAATCTAAAAGTCTTGCAAATCTTTAAATTCTTGTAAAC
CTAA
Found at i:2433002 original size:52 final size:52
Alignment explanation
Indices: 2432850--2433013 Score: 220
Period size: 52 Copynumber: 3.2 Consensus size: 52
2432840 TGAATTTTTG
* * * * * *
2432850 AAGTCTTACAAATCTTTAAATTCTTGTGAACCTGAATTTTTTGTAAATTTGA
1 AAGTCTTGCAAATCTTTGAATTCTTGTGAACCTGAAATTCTTGTGAATCTGA
* *
2432902 AAGTTTTGCAAATCTTTGAATTCTTGTGAACCTGAAATTCTTGCGAATCTGA
1 AAGTCTTGCAAATCTTTGAATTCTTGTGAACCTGAAATTCTTGTGAATCTGA
* * *
2432954 AAGTCTTGCAAATCTTTGAATTCTTGTAAACCTAAAATTCTTGTGAATCTAA
1 AAGTCTTGCAAATCTTTGAATTCTTGTGAACCTGAAATTCTTGTGAATCTGA
*
2433006 AATTCTTG
1 AAGTCTTG
2433014 TGAATCTAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 98 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (52 bp):
AAGTCTTGCAAATCTTTGAATTCTTGTGAACCTGAAATTCTTGTGAATCTGA
Found at i:2433018 original size:17 final size:17
Alignment explanation
Indices: 2432920--2433048 Score: 107
Period size: 17 Copynumber: 7.5 Consensus size: 17
2432910 CAAATCTTTG
* *
2432920 AATTCTTGTGAACCTGA
1 AATTCTTGTGAATCTAA
* *
2432937 AATTCTTGCGAATCTGA
1 AATTCTTGTGAATCTAA
* ** **
2432954 AAGTCTTGCAAATCTTTG
1 AATTCTTGTGAATC-TAA
* *
2432972 AATTCTTGTAAACCTAA
1 AATTCTTGTGAATCTAA
2432989 AATTCTTGTGAATCTAA
1 AATTCTTGTGAATCTAA
2433006 AATTCTTGTGAATCTAA
1 AATTCTTGTGAATCTAA
* *
2433023 AAGTT-TTGCGAATCTTTA
1 AA-TTCTTGTGAATC-TAA
2433041 AATTCTTG
1 AATTCTTG
2433049 CAAAAGTGAA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
17 72 0.77
18 21 0.23
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (17 bp):
AATTCTTGTGAATCTAA
Found at i:2433061 original size:69 final size:69
Alignment explanation
Indices: 2432920--2433064 Score: 191
Period size: 69 Copynumber: 2.1 Consensus size: 69
2432910 CAAATCTTTG
* * * * *
2432920 AATTCTTGTGAACCTGAAATTCTTGCGAATCTGAAAGTCTTGCAAATCTTTGAATTCTTGTAAAC
1 AATTCTTGTGAACCTAAAATTCTTGCGAATCTAAAAGTCTTGCAAATCTTTAAATTCTTGCAAAA
2432985 CTAA
66 CTAA
* * * *
2432989 AATTCTTGTGAATCTAAAATTCTTGTGAATCTAAAAGTTTTGCGAATCTTTAAATTCTTGCAAAA
1 AATTCTTGTGAACCTAAAATTCTTGCGAATCTAAAAGTCTTGCAAATCTTTAAATTCTTGCAAAA
* *
2433054 GTGA
66 CTAA
2433058 AATTCTT
1 AATTCTT
2433065 ACGAATTTGG
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (69 bp):
AATTCTTGTGAACCTAAAATTCTTGCGAATCTAAAAGTCTTGCAAATCTTTAAATTCTTGCAAAA
CTAA
Found at i:2433147 original size:53 final size:53
Alignment explanation
Indices: 2433078--2433178 Score: 127
Period size: 53 Copynumber: 1.9 Consensus size: 53
2433068 AATTTGGAAT
** *
2433078 CTCTGCGATTCTTGAAA-CATTTATGAATC-TCAAAATCTTTGC-AATTTTAAAAC
1 CTCTGCGAAACTTGAAATC-TTTATGAA-CAT-AAAATCTTTACGAATTTTAAAAC
2433131 CTCTGCGAAACTTGAAATCTTTATGAACATAAAATCTTTACGAATTTT
1 CTCTGCGAAACTTGAAATCTTTATGAACATAAAATCTTTACGAATTTT
2433179 TAATCTTTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
52 11 0.26
53 30 0.71
54 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.38
Consensus pattern (53 bp):
CTCTGCGAAACTTGAAATCTTTATGAACATAAAATCTTTACGAATTTTAAAAC
Found at i:2433235 original size:18 final size:17
Alignment explanation
Indices: 2433163--2433255 Score: 87
Period size: 17 Copynumber: 5.4 Consensus size: 17
2433153 ATGAACATAA
*
2433163 AATCTTTACGAATTTTT
1 AATCTTTACGAATTTTG
*
2433180 AATCTTTACAAATTTTG
1 AATCTTTACGAATTTTG
* ** *
2433197 AAGTTTTTGTGAATCTTG
1 AA-TCTTTACGAATTTTG
*
2433215 AATCTTTGCGAATTTTGG
1 AATCTTTACGAATTTT-G
* *
2433233 AATCATTATGAATTTTG
1 AATCTTTACGAATTTTG
2433250 AATCTT
1 AATCTT
2433256 GGAATCTTTC
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
17 34 0.57
18 26 0.43
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (17 bp):
AATCTTTACGAATTTTG
Found at i:2433598 original size:18 final size:18
Alignment explanation
Indices: 2433575--2433657 Score: 96
Period size: 18 Copynumber: 4.7 Consensus size: 18
2433565 AATGCCCAAA
*
2433575 AATTTTAATTTTAATTTT
1 AATTTTAGTTTTAATTTT
* *
2433593 AATTTTGGTTTTAGTTTT
1 AATTTTAGTTTTAATTTT
*
2433611 AATTTTGGTTTTAA-TTT
1 AATTTTAGTTTTAATTTT
*
2433628 GATTTTAGTTTTAATTTT
1 AATTTTAGTTTTAATTTT
* *
2433646 GATTTTGGTTTT
1 AATTTTAGTTTT
2433658 TAACTTTAGG
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
17 15 0.26
18 42 0.74
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (18 bp):
AATTTTAGTTTTAATTTT
Found at i:2433652 original size:6 final size:6
Alignment explanation
Indices: 2433575--2433651 Score: 75
Period size: 6 Copynumber: 13.0 Consensus size: 6
2433565 AATGCCCAAA
** * **
2433575 AATTTT AATTTT AATTTT AATTTT GGTTTT AGTTTT AATTTT GGTTTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT
* * *
2433623 AA-TTT GATTTT AGTTTT AATTTT GATTTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT
2433652 GGTTTTTAAC
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
5 4 0.07
6 53 0.93
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.66
Consensus pattern (6 bp):
AATTTT
Found at i:2434028 original size:2 final size:2
Alignment explanation
Indices: 2434021--2434047 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2434011 CGATTGGTTT
2434021 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2434048 TCTAGGTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2439304 original size:2 final size:2
Alignment explanation
Indices: 2439299--2439326 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2439289 ATATATATAT
2439299 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
2439327 CATACTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2439627 original size:2 final size:2
Alignment explanation
Indices: 2439615--2439646 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
2439605 GTTGTAGATC
*
2439615 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2439647 TTTACATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:2440646 original size:25 final size:26
Alignment explanation
Indices: 2440593--2440646 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
2440583 TATTAATAAC
* *
2440593 ATTTTTAACTAATATATGGGTTGGCT
1 ATTTTTAACTAATATATGAGTAGGCT
* *
2440619 ATTTTTAATTATTATATGAGTAGG-T
1 ATTTTTAACTAATATATGAGTAGGCT
2440644 ATT
1 ATT
2440647 ATAGCATGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.50
Consensus pattern (26 bp):
ATTTTTAACTAATATATGAGTAGGCT
Found at i:2464935 original size:2 final size:2
Alignment explanation
Indices: 2464928--2464976 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
2464918 TGACCTCCTC
2464928 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2464970 TA TA TA T
1 TA TA TA T
2464977 TCATACATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2465579 original size:5 final size:5
Alignment explanation
Indices: 2465571--2465599 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
2465561 TGCTGATAAA
2465571 TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTAT
2465600 CATTCAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:2467315 original size:12 final size:12
Alignment explanation
Indices: 2467298--2467322 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2467288 TATATGCTAA
2467298 TTGTAAATGAAG
1 TTGTAAATGAAG
2467310 TTGTAAATGAAG
1 TTGTAAATGAAG
2467322 T
1 T
2467323 ATGAATATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (12 bp):
TTGTAAATGAAG
Found at i:2474698 original size:26 final size:28
Alignment explanation
Indices: 2474651--2474702 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
2474641 TCCAAAACTT
*
2474651 TTCATAACTTGAACCAACAAGTTCATAG
1 TTCATAACTTGAACCAAAAAGTTCATAG
2474679 TTCATAA-TT-AACCAAAAAGTTCAT
1 TTCATAACTTGAACCAAAAAGTTCAT
2474703 TTTTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.61
27 2 0.09
28 7 0.30
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (28 bp):
TTCATAACTTGAACCAAAAAGTTCATAG
Found at i:2475293 original size:16 final size:17
Alignment explanation
Indices: 2475272--2475312 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
2475262 AATTATAACT
2475272 TAAAATGA-CTGAAATC
1 TAAAATGATCTGAAATC
* *
2475288 TAAAATAATCTGATATC
1 TAAAATGATCTGAAATC
2475305 -AAAATGAT
1 TAAAATGAT
2475313 AAGATCCACA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.29
Consensus pattern (17 bp):
TAAAATGATCTGAAATC
Found at i:2475831 original size:3 final size:3
Alignment explanation
Indices: 2475823--2475860 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
2475813 TTGAGTTCTT
2475823 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
2475861 TGTCAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:2480835 original size:2 final size:2
Alignment explanation
Indices: 2480830--2480860 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
2480820 TGTGTGTGTG
*
2480830 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2480861 TAAATGGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2481151 original size:13 final size:13
Alignment explanation
Indices: 2481133--2481166 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
2481123 TTTTAAATTT
2481133 TATATAATTAACA
1 TATATAATTAACA
*
2481146 TATATAAATAACA
1 TATATAATTAACA
2481159 TATA-AATT
1 TATATAATT
2481167 GTGAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TATATAATTAACA
Found at i:2481418 original size:2 final size:2
Alignment explanation
Indices: 2481413--2481451 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
2481403 TATATATCCA
2481413 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
2481452 ATATATATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:2481456 original size:2 final size:2
Alignment explanation
Indices: 2481451--2481481 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2481441 TCTCTCTCTC
2481451 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2481482 TAAGTATGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2483845 original size:18 final size:20
Alignment explanation
Indices: 2483816--2483858 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
2483806 GTTTACAAGC
2483816 TTAATCAAATTTTAA-TATT
1 TTAATCAAATTTTAATTATT
2483835 TTAAT-AAATTTTAATTATT
1 TTAATCAAATTTTAATTATT
2483854 TTAAT
1 TTAAT
2483859 TAATAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAATCAAATTTTAATTATT
Found at i:2491584 original size:19 final size:19
Alignment explanation
Indices: 2491562--2491598 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2491552 CAATTCAAAA
*
2491562 TTAATTTAATAATTTTAAT
1 TTAATATAATAATTTTAAT
*
2491581 TTAATATAATATTTTTAA
1 TTAATATAATAATTTTAA
2491599 AATATTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAATATAATAATTTTAAT
Found at i:2491597 original size:14 final size:14
Alignment explanation
Indices: 2491580--2491621 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
2491570 ATAATTTTAA
*
2491580 TTTAATATAATATT
1 TTTAAAATAATATT
*
2491594 TTTAAAATATTATT
1 TTTAAAATAATATT
2491608 TTTAAAATAATATT
1 TTTAAAATAATATT
2491622 ATATTTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTAAAATAATATT
Found at i:2491597 original size:28 final size:28
Alignment explanation
Indices: 2491566--2491621 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
2491556 TCAAAATTAA
* *
2491566 TTTAATAATTTTA-ATTTAATATAATATT
1 TTTAA-AATATTATATTTAAAATAATATT
*
2491594 TTTAAAATATTATTTTTAAAATAATATT
1 TTTAAAATATTATATTTAAAATAATATT
2491622 ATATTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (28 bp):
TTTAAAATATTATATTTAAAATAATATT
Found at i:2493995 original size:20 final size:22
Alignment explanation
Indices: 2493945--2494006 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 22
2493935 AACTTAATAA
2493945 AAATAATATATTTATATATAATTC
1 AAATAATA-ATTTATATATAA-TC
*
2493969 AGA-AATAATTTATAT-TAA-C
1 AAATAATAATTTATATATAATC
*
2493988 AAATAATATTTTATATATA
1 AAATAATAATTTATATATA
2494007 TTATATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 3 0.09
20 11 0.33
21 5 0.15
22 8 0.24
23 4 0.12
24 2 0.06
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (22 bp):
AAATAATAATTTATATATAATC
Found at i:2496841 original size:23 final size:22
Alignment explanation
Indices: 2496769--2496847 Score: 56
Period size: 23 Copynumber: 3.6 Consensus size: 22
2496759 AATGATTTGG
*
2496769 ATTTAAA-A-AAATAATAATAATA
1 ATTTAAATATAAA-AATAATTA-A
* *
2496791 ATTTAAGTATAAAAATATTTAA
1 ATTTAAATATAAAAATAATTAA
* *
2496813 A-ATAAATATATAAATCAATTAA
1 ATTTAAATATAAAAAT-AATTAA
*
2496835 ATTTAAATTTAAA
1 ATTTAAATATAAA
2496848 TTTAAATAAC
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
21 11 0.26
22 14 0.33
23 15 0.35
24 3 0.07
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (22 bp):
ATTTAAATATAAAAATAATTAA
Found at i:2497463 original size:27 final size:27
Alignment explanation
Indices: 2497375--2497464 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 27
2497365 GATTTACCTG
*
2497375 GTACGTATTTTTTTTCATGTGTATGTAT
1 GTACGTA-TTTTGTTCATGTGTATGTAT
* *
2497403 GCGTATACATATTTTGTTCATGTTTTACT-T-T
1 --G--TACGTATTTTGTTCATG-TGTA-TGTAT
2497434 GTACGTATTTTGTTCATGTGTATGTAT
1 GTACGTATTTTGTTCATGTGTATGTAT
2497461 GTAC
1 GTAC
2497465 TTTTAATCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
25 1 0.02
26 4 0.08
27 21 0.43
29 1 0.02
30 1 0.02
31 11 0.22
32 9 0.18
33 1 0.02
ACGTcount: A:0.19, C:0.10, G:0.18, T:0.53
Consensus pattern (27 bp):
GTACGTATTTTGTTCATGTGTATGTAT
Found at i:2503782 original size:28 final size:27
Alignment explanation
Indices: 2503751--2503812 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
2503741 TGAATATATA
2503751 TATATATTTGT-ATTAAATAAATTTAAAT
1 TATATATTTGTAATTAAA-AAA-TTAAAT
* *
2503779 TATAATGTTTTTAATTAAAAAATTAAAT
1 TAT-ATATTTGTAATTAAAAAATTAAAT
2503807 TA-ATAT
1 TATATAT
2503813 CTATTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 3 0.10
28 11 0.38
29 9 0.31
30 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (27 bp):
TATATATTTGTAATTAAAAAATTAAAT
Found at i:2503819 original size:28 final size:30
Alignment explanation
Indices: 2503762--2503819 Score: 68
Period size: 28 Copynumber: 2.0 Consensus size: 30
2503752 ATATATTTGT
* *
2503762 ATTAAATAAATTTAAATTATAATGTTTTTA
1 ATTAAATAAATTTAAATTATAATCTATTTA
2503792 ATTAAA-AAA-TTAAATTA-ATATCTATTTA
1 ATTAAATAAATTTAAATTATA-ATCTATTTA
2503820 TTTATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 1 0.04
28 15 0.60
29 3 0.12
30 6 0.24
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (30 bp):
ATTAAATAAATTTAAATTATAATCTATTTA
Found at i:2509059 original size:257 final size:257
Alignment explanation
Indices: 2508603--2509122 Score: 862
Period size: 257 Copynumber: 2.0 Consensus size: 257
2508593 GAAAAAAGGC
*
2508603 TTTGGAAAGCTATTTCTTTAAATTTTTGAATTTCATCAATCTGTTTGACTAGAAATTTAGCTAAT
1 TTTGGAAAGCTATTTCTTTAAATTTTTGAATTTCATCAATCTGTTTAACTAGAAATTTAGCTAAT
* * *
2508668 TTGGTCATCTCTTTTCGGAAACTAGATTTATTTTCTGAGAGATGGGATATCCAAATATGGTTTAG
66 TCGATCATCTCTTTTCGAAAACTAGATTTATTTTCTGAGAGATGGGATATCCAAATATGGTTTAG
* * * * * *
2508733 TAGATTATAGACTCGTGGTTCAAGTCCGAGGTTATACAAATCTTTTATATTTGATTTGATTTTTG
131 TAAATCATAAACTCATGGTTCAAGTCCGAGGTTATAAAAATCTTTTATATCTGATTTGATTTTTG
* * * *
2508798 TTTCTCTCGGCAATTGTTCTGCAGAAGAAACTATTTCAGAATAA-CTCATAGAAGTTCATTTG
196 TTTCTCTCAGCAATTATTCTACAGAAGAAACTATTTCAAAATAACCT-ATAGAAGTTCATTTG
* *
2508860 TTTGGAAAGCTGTTTCTTTAAATTTTTGAATTTCATCAATTTGTTTAACTAGAAATTTAGCTAAT
1 TTTGGAAAGCTATTTCTTTAAATTTTTGAATTTCATCAATCTGTTTAACTAGAAATTTAGCTAAT
*
2508925 TCGATCATCTTTTTTCGAAAACTAGATTTATTTTCTGAGAGATGGGATATCCAAATATGGTTTAG
66 TCGATCATCTCTTTTCGAAAACTAGATTTATTTTCTGAGAGATGGGATATCCAAATATGGTTTAG
2508990 TAAATCATAAACTCATGGTTCAAGTCCGAGGTTATAAAAATCTTTTATATCTGATTTGATTTTTG
131 TAAATCATAAACTCATGGTTCAAGTCCGAGGTTATAAAAATCTTTTATATCTGATTTGATTTTTG
*
2509055 TTTCTCTCAGCAATTATTCTACAGAAGAAACTATTTCAAAATAACCTATAGGAGTTCATTTG
196 TTTCTCTCAGCAATTATTCTACAGAAGAAACTATTTCAAAATAACCTATAGAAGTTCATTTG
2509117 TTTGGA
1 TTTGGA
2509123 TCTTGAACAA
Statistics
Matches: 244, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
257 242 0.99
258 2 0.01
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.42
Consensus pattern (257 bp):
TTTGGAAAGCTATTTCTTTAAATTTTTGAATTTCATCAATCTGTTTAACTAGAAATTTAGCTAAT
TCGATCATCTCTTTTCGAAAACTAGATTTATTTTCTGAGAGATGGGATATCCAAATATGGTTTAG
TAAATCATAAACTCATGGTTCAAGTCCGAGGTTATAAAAATCTTTTATATCTGATTTGATTTTTG
TTTCTCTCAGCAATTATTCTACAGAAGAAACTATTTCAAAATAACCTATAGAAGTTCATTTG
Done.