Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 15 of 121
Found at i:2514157 original size:6 final size:6
Alignment explanation
Indices: 2514136--2514170 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
2514126 AATTATATAA
2514136 TATATAT TAT-TT TATATT TATATT TATATT TATAT
1 TATAT-T TATATT TATATT TATATT TATATT TATAT
2514171 ATTAGGTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 4 0.15
6 20 0.74
7 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TATATT
Found at i:2514239 original size:35 final size:34
Alignment explanation
Indices: 2514186--2514255 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 34
2514176 GTAATTTATA
*
2514186 TCATATAAAAATAAATATATATAATATTATAAAT
1 TCATATAAAAATAAATATATATAATATTACAAAT
*
2514220 TCATATAAAATATATATATATATAATATTACAAAT
1 TCATATAAAA-ATAAATATATATAATATTACAAAT
2514255 T
1 T
2514256 ATGTTAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 10 0.30
35 23 0.70
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (34 bp):
TCATATAAAAATAAATATATATAATATTACAAAT
Found at i:2514672 original size:29 final size:28
Alignment explanation
Indices: 2514629--2514687 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
2514619 AATTAAAGTG
*
2514629 AAATGTTAAATATGATATTTAAATTTTA
1 AAATGTTAAATATGATATTTAAATTATA
*
2514657 AAATTTTATAATATGATATTTAAATTATA
1 AAATGTTA-AATATGATATTTAAATTATA
2514686 AA
1 AA
2514688 TTTATTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (28 bp):
AAATGTTAAATATGATATTTAAATTATA
Found at i:2514786 original size:29 final size:30
Alignment explanation
Indices: 2514747--2514817 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
2514737 AATTAACTGA
* *
2514747 TTTATAATTTAAGTATCACATTATATATTT
1 TTTATAATTTAACTATCACATTAAATATTT
*
2514777 TTTA-AATTTAACTATTACATTAAATATTT
1 TTTATAATTTAACTATCACATTAAATATTT
*
2514806 ATTATAATTTAA
1 TTTATAATTTAA
2514818 AGATTATGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 25 0.69
30 11 0.31
ACGTcount: A:0.41, C:0.06, G:0.01, T:0.52
Consensus pattern (30 bp):
TTTATAATTTAACTATCACATTAAATATTT
Found at i:2524800 original size:86 final size:86
Alignment explanation
Indices: 2524692--2524864 Score: 301
Period size: 86 Copynumber: 2.0 Consensus size: 86
2524682 ACAATAGTAG
* * *
2524692 TATAGGACATCTTTGTAAAGTATTTACCCACTAGAATCTGAACTACAGCTTACAAATTATTAGGA
1 TATAGGACATCTTAGTAAAGTATTTACCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
*
2524757 TAGAGCTTAAACAAGTATCTA
66 TAGAACTTAAACAAGTATCTA
*
2524778 TATAGGACATCTTAGTAAAGTATTTAGCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
1 TATAGGACATCTTAGTAAAGTATTTACCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
2524843 TAGAACTTAAACAAGTATCTA
66 TAGAACTTAAACAAGTATCTA
2524864 T
1 T
2524865 CTGAGTGAGA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (86 bp):
TATAGGACATCTTAGTAAAGTATTTACCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
TAGAACTTAAACAAGTATCTA
Found at i:2533183 original size:13 final size:15
Alignment explanation
Indices: 2533158--2533191 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
2533148 TTGTTTTGTA
2533158 AAAAATAACTTTTT-
1 AAAAATAACTTTTTG
2533172 AAAAATAA-TTTTTG
1 AAAAATAACTTTTTG
2533186 AAAAAT
1 AAAAAT
2533192 TTTATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (15 bp):
AAAAATAACTTTTTG
Found at i:2533362 original size:26 final size:25
Alignment explanation
Indices: 2533311--2533378 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 25
2533301 TATTAATATA
*
2533311 ATTATTAAAATATTAAAAATTATTT
1 ATTATTAAAATATTAAAAACTATTT
2533336 ATTATTAAAATACATT-AAAACTATTT
1 ATTATTAAAAT--ATTAAAAACTATTT
2533362 ATTATTAAAATTATTAA
1 ATTATTAAAA-TATTAA
2533379 TATTAAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
25 14 0.37
26 20 0.53
27 4 0.11
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTATTAAAATATTAAAAACTATTT
Found at i:2533384 original size:15 final size:16
Alignment explanation
Indices: 2533349--2533427 Score: 54
Period size: 16 Copynumber: 4.8 Consensus size: 16
2533339 ATTAAAATAC
*
2533349 ATTAAAACTATTTATT
1 ATTAAAACTATTTAAT
*
2533365 ATTAAAATTA-TTAAT
1 ATTAAAACTATTTAAT
* *
2533380 ATTAAAAAATAATTATAT
1 ATT-AAAACTATTTA-AT
*
2533398 TTTAATAACAATATTTAAT
1 ATTAA-AAC--TATTTAAT
2533417 ATTAAAA-TATT
1 ATTAAAACTATT
2533428 ATATTAATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
15 11 0.22
16 15 0.30
17 5 0.10
18 8 0.16
19 6 0.12
20 5 0.10
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTAAAACTATTTAAT
Found at i:2533521 original size:18 final size:17
Alignment explanation
Indices: 2533496--2533573 Score: 92
Period size: 18 Copynumber: 4.6 Consensus size: 17
2533486 ATATATTATA
2533496 ATATTATTTATTAATAAT
1 ATATTATTTATTAAT-AT
*
2533514 ACATTATTTATT-A-AT
1 ATATTATTTATTAATAT
2533529 ATATTA--TATTAATAGT
1 ATATTATTTATTAATA-T
2533545 ATATTATTTATTAATAT
1 ATATTATTTATTAATAT
2533562 AATATTATTTAT
1 -ATATTATTTAT
2533574 AAGTAAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
13 4 0.08
14 1 0.02
15 8 0.15
16 7 0.13
17 2 0.04
18 30 0.58
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (17 bp):
ATATTATTTATTAATAT
Found at i:2533539 original size:31 final size:30
Alignment explanation
Indices: 2533494--2533562 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 30
2533484 TAATATATTA
2533494 TAATATTATTTATTAATAATACATTATTTAT
1 TAATA-TATTTATTAATAATACATTATTTAT
* *
2533525 TAATATATTATATTAATAGTATATTATTTAT
1 TAATATATT-TATTAATAATACATTATTTAT
2533556 TAATATA
1 TAATATA
2533563 ATATTATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (30 bp):
TAATATATTTATTAATAATACATTATTTAT
Found at i:2540389 original size:18 final size:18
Alignment explanation
Indices: 2540366--2540423 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
2540356 TCATATAAAA
2540366 ATAAATATATATAATATT
1 ATAAATATATATAATATT
*
2540384 ATAAAT-TCATATAA-A-A
1 ATAAATAT-ATATAATATT
*
2540400 ATATATATATATAATATT
1 ATAAATATATATAATATT
*
2540418 ACAAAT
1 ATAAAT
2540424 TATGTTAAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
16 11 0.35
17 4 0.13
18 16 0.52
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAAATATATATAATATT
Found at i:2540399 original size:34 final size:34
Alignment explanation
Indices: 2540356--2540424 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
2540346 TATATTTATA
*
2540356 TCATATAAAAATAAATATATATAATATTATAAAT
1 TCATATAAAAATAAATATATATAATATTACAAAT
*
2540390 TCATATAAAAATATATATATATAATATTACAAAT
1 TCATATAAAAATAAATATATATAATATTACAAAT
2540424 T
1 T
2540425 ATGTTAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (34 bp):
TCATATAAAAATAAATATATATAATATTACAAAT
Found at i:2540841 original size:29 final size:28
Alignment explanation
Indices: 2540798--2540856 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
2540788 AATTAAAGTG
*
2540798 AAATGTTAAATATGATATTTAAATTTTA
1 AAATGTTAAATATGATATTTAAATTATA
*
2540826 AAATTTTATAATATGATATTTAAATTATA
1 AAATGTTA-AATATGATATTTAAATTATA
2540855 AA
1 AA
2540857 TTTATTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (28 bp):
AAATGTTAAATATGATATTTAAATTATA
Found at i:2540955 original size:29 final size:30
Alignment explanation
Indices: 2540916--2540987 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
2540906 AGTTAATTGA
* *
2540916 TTTATAATTTAAGTATCACATTATATATTT
1 TTTATAATTTAACTATCACATTAAATATTT
*
2540946 TTTA-AATTTAACTATTACATTAAATATTT
1 TTTATAATTTAACTATCACATTAAATATTT
2540975 TATTATAATTTAA
1 T-TTATAATTTAA
2540988 AGATTATGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.62
30 7 0.19
31 7 0.19
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.53
Consensus pattern (30 bp):
TTTATAATTTAACTATCACATTAAATATTT
Found at i:2551000 original size:86 final size:86
Alignment explanation
Indices: 2550892--2551064 Score: 310
Period size: 86 Copynumber: 2.0 Consensus size: 86
2550882 ACAATAGTAG
* * *
2550892 TATAGGACATCTTTGTAAAGTATTTACCCACTAGAATCTGAACTACAGCTTACAAATTATTAGGA
1 TATAGGACATCTTAGTAAAGTATTTACCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
2550957 TAGAGCTTAAACAAGTATCTA
66 TAGAGCTTAAACAAGTATCTA
*
2550978 TATAGGACATCTTAGTAAAGTATTTAGCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
1 TATAGGACATCTTAGTAAAGTATTTACCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
2551043 TAGAGCTTAAACAAGTATCTA
66 TAGAGCTTAAACAAGTATCTA
2551064 T
1 T
2551065 CTGAGTGAGA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (86 bp):
TATAGGACATCTTAGTAAAGTATTTACCCACTAGAATCCGAACTACAGCATACAAATTATTAGGA
TAGAGCTTAAACAAGTATCTA
Found at i:2557418 original size:31 final size:31
Alignment explanation
Indices: 2557357--2557420 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
2557347 TTAAAAATTT
* *
2557357 TTAATGTAATATTTAAATTATAAGTTATTAA
1 TTAATATAATATTTAAATTATAAGTGATTAA
* *
2557388 TTAATATAATATTT-ATTTTTAATGTGATTAA
1 TTAATATAATATTTAAATTATAA-GTGATTAA
2557419 TT
1 TT
2557421 TTAAATGATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 6 0.21
31 22 0.79
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (31 bp):
TTAATATAATATTTAAATTATAAGTGATTAA
Found at i:2557517 original size:29 final size:29
Alignment explanation
Indices: 2557480--2557538 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
2557470 ACTTATCAAA
* *
2557480 TTTATAATTTAATTAACATATTAAAAATT
1 TTTAAAATTTAAATAACATATTAAAAATT
** *
2557509 TTTAAAATTTAAATATTATATTAAACATT
1 TTTAAAATTTAAATAACATATTAAAAATT
2557538 T
1 T
2557539 CACTATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TTTAAAATTTAAATAACATATTAAAAATT
Found at i:2558567 original size:52 final size:51
Alignment explanation
Indices: 2558415--2558571 Score: 206
Period size: 52 Copynumber: 3.0 Consensus size: 51
2558405 TATAACCATA
* * * **
2558415 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTATAAGT
1 CAAACTTGCCTATTAAGAATCCCT-TTCTCTTAGAATTCTTCTCTTGCAAGT
*
2558467 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTT-CTCTTAGAATTCTTCTCTTGCAAGT
* * *
2558519 CAAACTTACCTATTAAGAATCCTCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-CTTTCTCTTAGAATTCTTCTCTTGCAAGT
2558571 C
1 C
2558572 TTCTTGTCCA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 1 0.01
52 88 0.95
53 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.09, T:0.39
Consensus pattern (51 bp):
CAAACTTGCCTATTAAGAATCCCTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:2558857 original size:23 final size:22
Alignment explanation
Indices: 2558826--2558892 Score: 62
Period size: 25 Copynumber: 2.8 Consensus size: 22
2558816 AAGCTTACTT
2558826 TTTCTCATATCTCAAACCAAGCTC
1 TTTC-CATATCTCAAACCAA-CTC
*
2558850 TTTCCATATCTCGAACTGTCAACTC
1 TTTCCATATCTCAAAC---CAACTC
* *
2558875 TTCCCATGTCTCAAACCA
1 TTTCCATATCTCAAACCA
2558893 TCGGCTCTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
22 2 0.06
23 11 0.31
24 4 0.11
25 16 0.44
26 3 0.08
ACGTcount: A:0.27, C:0.34, G:0.06, T:0.33
Consensus pattern (22 bp):
TTTCCATATCTCAAACCAACTC
Found at i:2558943 original size:24 final size:25
Alignment explanation
Indices: 2558896--2558949 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
2558886 CAAACCATCG
*
2558896 GCTCTTCTCACATCTTGAATCTTCA
1 GCTCTTCTCACATCTTGAAACTTCA
*
2558921 -CTCTTCTCACGT-TTCGAAACTTCA
1 GCTCTTCTCACATCTT-GAAACTTCA
2558945 GCTCT
1 GCTCT
2558950 GATACCACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 2 0.08
24 19 0.76
25 4 0.16
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.39
Consensus pattern (25 bp):
GCTCTTCTCACATCTTGAAACTTCA
Found at i:2558981 original size:31 final size:30
Alignment explanation
Indices: 2558943--2559027 Score: 98
Period size: 31 Copynumber: 2.8 Consensus size: 30
2558933 TTCGAAACTT
* *
2558943 CAGCTCTGATACCACTTGTTGGGGATCACCA
1 CAGCTCTGATACCATTTGTTGGGAAT-ACCA
* ** *
2558974 CAGCTCTGATACCATTTGTCGAAAAATATCA
1 CAGCTCTGATACCATTTGTTG-GGAATACCA
2559005 CAGCTCTGATACCATTTGTTGGG
1 CAGCTCTGATACCATTTGTTGGG
2559028 CTAAAAGCCT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
31 42 0.95
32 2 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (30 bp):
CAGCTCTGATACCATTTGTTGGGAATACCA
Found at i:2572395 original size:2 final size:2
Alignment explanation
Indices: 2572390--2572445 Score: 69
Period size: 2 Copynumber: 28.5 Consensus size: 2
2572380 TATTTTGAAG
* * * *
2572390 TA TA TA TA TA TA TC TA TA AA TA TA -A AA TA TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2572431 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
2572446 TGTAATAGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:2582138 original size:18 final size:17
Alignment explanation
Indices: 2582106--2582160 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
2582096 TTAAATATTT
2582106 AATTTAAATAATTTTTA
1 AATTTAAATAATTTTTA
*
2582123 AATTTAATTGAATTTTTA
1 AATTTAAAT-AATTTTTA
* *
2582141 TATTTTAATATATATTTTA
1 AATTTAAATA-AT-TTTTA
2582160 A
1 A
2582161 TTATTTTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
17 9 0.30
18 16 0.53
19 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
AATTTAAATAATTTTTA
Found at i:2582147 original size:19 final size:18
Alignment explanation
Indices: 2582108--2582173 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
2582098 AAATATTTAA
* *
2582108 TTTAAATAATTTTTA-AA
1 TTTAATTAATTTTTATAT
2582125 TTTAATTGAATTTTTATAT
1 TTTAATT-AATTTTTATAT
*
2582144 TTTAATATATATTTTAATTAT
1 TTTAAT-TA-ATTTTTA-TAT
2582165 TTTAATTAA
1 TTTAATTAA
2582174 AAATTATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 6 0.15
18 8 0.20
19 9 0.22
20 9 0.22
21 9 0.22
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTAATTAATTTTTATAT
Found at i:2583609 original size:10 final size:10
Alignment explanation
Indices: 2583593--2583647 Score: 83
Period size: 10 Copynumber: 5.5 Consensus size: 10
2583583 TGAAGGATAA
2583593 TCTCTCCCTC
1 TCTCTCCCTC
*
2583603 CCTCTCCCTC
1 TCTCTCCCTC
*
2583613 TCTCTCTCTC
1 TCTCTCCCTC
*
2583623 TCTCTCTCTC
1 TCTCTCCCTC
2583633 TCTCTCCCTC
1 TCTCTCCCTC
2583643 TCTCT
1 TCTCT
2583648 AATCATGCGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 41 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (10 bp):
TCTCTCCCTC
Found at i:2583611 original size:6 final size:6
Alignment explanation
Indices: 2583593--2583647 Score: 74
Period size: 6 Copynumber: 9.2 Consensus size: 6
2583583 TGAAGGATAA
* * * *
2583593 TCTCTC CCTCCC TCTCCC TCTCTC TCTCTC TCTCTC TCTCTC TCTCCC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
2583641 TCTCTC T
1 TCTCTC T
2583648 AATCATGCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (6 bp):
TCTCTC
Found at i:2583617 original size:4 final size:4
Alignment explanation
Indices: 2583593--2583647 Score: 74
Period size: 4 Copynumber: 13.8 Consensus size: 4
2583583 TGAAGGATAA
* * * *
2583593 TCTC TCCC TCCC TCTC CCTC TCTC TCTC TCTC TCTC TCTC TCTC TCCC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
2583641 TCTC TCT
1 TCTC TCT
2583648 AATCATGCGT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (4 bp):
TCTC
Found at i:2588158 original size:257 final size:259
Alignment explanation
Indices: 2587679--2588195 Score: 810
Period size: 257 Copynumber: 2.0 Consensus size: 259
2587669 GATTCAACCC
*
2587679 TCCTTATGATTTGATATTTTTTCCCCTAAATTTTCACCAGAATATGTTATGTGTTCCACATCTTC
1 TCCTTATGATTTGATATTTTTTCCCCTAAATTTTCACCACAATATGTTATGTGTTCCACATCTTC
*
2587744 AGGTAGCTTTTTCTTTCCCTCTTTTTGGGTTTTTTTTTTTTTGTTGGTTTGGGTGTTTGATAGCT
66 AGGTAACTTTTTCTTTCCCTCTTTTTGGG---TTTTTTTTTTGTT-GTTTGGGTGTTTGATAGCT
* * *
2587809 GAGAAAATGCTGGAAAAGGAAGGAAATTTGGGTAAAGTTTGGGTTTTTTGCTTCTTTTTTTATTG
127 GAGAAAATGCTGAAAAAGGAAGGAAATTTGGGTAAAGTTTGGGTTTTTTGCTTCTTTTTTCACTG
*
2587874 TTTTGTTATTTGGGGTTTTTAAGCTAACTCTTCTTTGTTTGGTGAGAGGAGAGTAAACTAGAAGT
192 TTTTGTTATTTGGGGTTTTTAAGCTAACTCTTCTTTGTTTGGTGAGAGAAGAGTAAACTAGAAGT
2587939 TTG
257 TTG
** *
2587942 TCCTTATGATTTGATATCTTTTTCCCCTAAATTTTCACCACTGTATGTTATGTGTTCCACTTCTT
1 TCCTTATGATTTGATAT-TTTTTCCCCTAAATTTTCACCACAATATGTTATGTGTTCCACATCTT
*
2588007 CAGGTAACTTTTTCTTTCCCTCTTTTTGGG-TTTTTTTTT-TT-TTTGGGTGTTTGGTAGCTGAG
65 CAGGTAACTTTTTCTTTCCCTCTTTTTGGGTTTTTTTTTTGTTGTTTGGGTGTTTGATAGCTGAG
* *
2588069 AAAATGCTGAAAAAGGAAGGAAATTTGGGTGAAGTTTGGGTTTTTTATGCTTC-TTTTTCCCT-T
130 AAAATGCTGAAAAAGGAAGGAAATTTGGGTAAAGTTTGGG-TTTTT-TGCTTCTTTTTTCACTGT
* *
2588132 TTTGTTTTTTGGGGTTTTTGAGCTAACTCTTCTTTGTTTGGTGAGAGAAGAGTAAACTAGAAGT
193 TTTGTTATTTGGGGTTTTTAAGCTAACTCTTCTTTGTTTGGTGAGAGAAGAGTAAACTAGAAGT
2588196 GTGAGCTTAG
Statistics
Matches: 237, Mismatches: 14, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
257 120 0.51
258 11 0.05
259 8 0.03
260 9 0.04
263 17 0.07
264 72 0.30
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.47
Consensus pattern (259 bp):
TCCTTATGATTTGATATTTTTTCCCCTAAATTTTCACCACAATATGTTATGTGTTCCACATCTTC
AGGTAACTTTTTCTTTCCCTCTTTTTGGGTTTTTTTTTTGTTGTTTGGGTGTTTGATAGCTGAGA
AAATGCTGAAAAAGGAAGGAAATTTGGGTAAAGTTTGGGTTTTTTGCTTCTTTTTTCACTGTTTT
GTTATTTGGGGTTTTTAAGCTAACTCTTCTTTGTTTGGTGAGAGAAGAGTAAACTAGAAGTTTG
Found at i:2600440 original size:16 final size:16
Alignment explanation
Indices: 2600412--2600462 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
2600402 TATTACTTTT
*
2600412 TTATTTTAT-TTTATA
1 TTATATTATATTTATA
2600427 TTATATTATATTTATA
1 TTATATTATATTTATA
*
2600443 TTATATCATTATATTATA
1 TTATATTA-TAT-TTATA
2600461 TT
1 TT
2600463 TTAAATTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 8 0.26
16 13 0.42
17 3 0.10
18 7 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATATTATATTTATA
Found at i:2600441 original size:11 final size:11
Alignment explanation
Indices: 2600412--2600463 Score: 63
Period size: 10 Copynumber: 4.7 Consensus size: 11
2600402 TATTACTTTT
*
2600412 TTAT-TTTATT
1 TTATATTTATA
2600422 TTATA-TTATA
1 TTATATTTATA
2600432 TTATATTTATA
1 TTATATTTATA
2600443 TTATATCATTATA
1 TTATAT--TTATA
2600456 TTATATTT
1 TTATATTT
2600464 TAAATTATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
10 13 0.35
11 13 0.35
13 11 0.30
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATATTTATA
Found at i:2600456 original size:13 final size:12
Alignment explanation
Indices: 2600413--2600476 Score: 67
Period size: 12 Copynumber: 5.2 Consensus size: 12
2600403 ATTACTTTTT
* *
2600413 TATTTTATTTTA
1 TATTATATTATA
2600425 TATTATATTATA
1 TATTATATTATA
2600437 T-TTATATTATA
1 TATTATATTATA
2600448 TCATTATATTATA
1 T-ATTATATTATA
* *
2600461 TTTTAAATTATCA
1 TATTATATTAT-A
2600474 TAT
1 TAT
2600477 CTAAATAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
11 11 0.25
12 19 0.43
13 14 0.32
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTATATTATA
Found at i:2600458 original size:24 final size:22
Alignment explanation
Indices: 2600413--2600465 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 22
2600403 ATTACTTTTT
*
2600413 TATTTTATTTTATATTATATTA
1 TATTTTATTATATATTATATTA
2600435 TATTTATATTATATCATTATATTA
1 TATTT-TATTATAT-ATTATATTA
2600459 TATTTTA
1 TATTTTA
2600466 AATTATCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 5 0.18
23 9 0.32
24 14 0.50
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTTTATTATATATTATATTA
Found at i:2606962 original size:30 final size:30
Alignment explanation
Indices: 2606928--2606989 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
2606918 CTACTATATT
*
2606928 ATAATATATCTAGGAAACAATGAAGTAAGC
1 ATAATATATCTAGGAAACAATGAAATAAGC
2606958 ATAATATATCTAGGAAACAATGAAATAAGC
1 ATAATATATCTAGGAAACAATGAAATAAGC
2606988 AT
1 AT
2606990 TGTGCTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.24
Consensus pattern (30 bp):
ATAATATATCTAGGAAACAATGAAATAAGC
Found at i:2611654 original size:28 final size:28
Alignment explanation
Indices: 2611622--2611680 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
2611612 TGCACTGAAC
*
2611622 ATTTTATTGATGCAAGTTTATTTTCTTG
1 ATTTTATTGATGCAAGTTCATTTTCTTG
2611650 ATTTTATTGATGCAAGTTCATTTTCTTG
1 ATTTTATTGATGCAAGTTCATTTTCTTG
2611678 ATT
1 ATT
2611681 ATCTTTTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.22, C:0.08, G:0.14, T:0.56
Consensus pattern (28 bp):
ATTTTATTGATGCAAGTTCATTTTCTTG
Found at i:2615908 original size:2 final size:2
Alignment explanation
Indices: 2615895--2615931 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
2615885 CACTTGTCCA
*
2615895 TC TC TA TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
2615932 TCGGTGCCGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.03, C:0.46, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:2624625 original size:1 final size:1
Alignment explanation
Indices: 2624593--2624617 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
2624583 ATGTTGGTGG
2624593 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
2624618 CTATTTTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:2625800 original size:29 final size:28
Alignment explanation
Indices: 2625741--2625817 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
2625731 TTTTGAATTA
**
2625741 TTTTATT-TTTTAAAATAAATTTTTATAT
1 TTTTATTATTTT-AAATAAATTCATATAT
* *
2625769 TTTTATTATTTTCAAATAAGTTCATATTT
1 TTTTATTATTTT-AAATAAATTCATATAT
*
2625798 TTTTATAATATTTAAATAAA
1 TTTTATTAT-TTTAAATAAA
2625818 AAATAGATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
28 7 0.17
29 30 0.75
30 3 0.08
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (28 bp):
TTTTATTATTTTAAATAAATTCATATAT
Found at i:2625873 original size:30 final size:30
Alignment explanation
Indices: 2625839--2625934 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
2625829 TGTTAAAGAC
2625839 TTATTTAAGTTCAAATTAAAGATTAAAAAT
1 TTATTTAAGTTCAAATTAAAGATTAAAAAT
* * * *
2625869 TTA-TTATGATATC-AATTAAAGTTTATAAGT
1 TTATTTAAG-T-TCAAATTAAAGATTAAAAAT
* * * *
2625899 TTATTTGAGTGCAAATTAAA-AATAAAAAA
1 TTATTTAAGTTCAAATTAAAGATTAAAAAT
2625928 TTATTTA
1 TTATTTA
2625935 GATGCAATAA
Statistics
Matches: 49, Mismatches: 13, Indels: 9
0.69 0.18 0.13
Matches are distributed among these distances:
29 15 0.31
30 29 0.59
31 5 0.10
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (30 bp):
TTATTTAAGTTCAAATTAAAGATTAAAAAT
Found at i:2625940 original size:29 final size:28
Alignment explanation
Indices: 2625899--2625957 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
2625889 GTTTATAAGT
2625899 TTATTTGAGTGCAAATTAAAAATA-AAAAA
1 TTATTTGAGTGC-AA-TAAAAATATAAAAA
*
2625928 TTATTT-AGATGCAATAAAAGTATAAAAA
1 TTATTTGAG-TGCAATAAAAATATAAAAA
2625956 TT
1 TT
2625958 TATATAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 7 0.26
28 11 0.41
29 9 0.33
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34
Consensus pattern (28 bp):
TTATTTGAGTGCAATAAAAATATAAAAA
Found at i:2634111 original size:28 final size:26
Alignment explanation
Indices: 2634091--2634140 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2634081 TAATATATTT
2634091 TATTT-TAAAAAAATATATTAATATA
1 TATTTATAAAAAAATATATTAATATA
*
2634116 TATTTATAAAAAAATATATAAATAT
1 TATTTATAAAAAAATATATTAATAT
2634141 GCAAGATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TATTTATAAAAAAATATATTAATATA
Found at i:2634114 original size:26 final size:27
Alignment explanation
Indices: 2634085--2634140 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
2634075 TTAAATTAAT
* *
2634085 ATATTTTATTT-TAAAAAAATATATTA
1 ATATTATATTTATAAAAAAATATATAA
2634111 ATA-TATATTTATAAAAAAATATATAA
1 ATATTATATTTATAAAAAAATATATAA
2634137 ATAT
1 ATAT
2634141 GCAAGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
ATATTATATTTATAAAAAAATATATAA
Found at i:2634132 original size:24 final size:24
Alignment explanation
Indices: 2634094--2634140 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
2634084 TATATTTTAT
2634094 TTTAAAAAAATATAT-TAATATATA
1 TTTAAAAAAATATATATAA-ATATA
2634118 TTTATAAAAAA-ATATATAAATAT
1 TTTA-AAAAAATATATATAAATAT
2634141 GCAAGATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TTTAAAAAAATATATATAAATATA
Found at i:2637958 original size:30 final size:30
Alignment explanation
Indices: 2637924--2637982 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
2637914 ATTAGTTTAA
**
2637924 ATTAATATAT-TTTATTTTAAAAATATATAT
1 ATTAATATATATTTA-TAAAAAAATATATAT
2637954 ATTAATATATATTTATAAAAAAATATATA
1 ATTAATATATATTTATAAAAAAATATATA
2637983 AATATGCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
ATTAATATATATTTATAAAAAAATATATAT
Found at i:2637979 original size:26 final size:27
Alignment explanation
Indices: 2637936--2637987 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
2637926 TAATATATTT
*
2637936 TATTTTAAAAATATATATATTAATATA
1 TATTTTAAAAATATATATATAAATATA
2637963 TATTTATAAAAA-A-ATATATAAATAT
1 TATTT-TAAAAATATATATATAAATAT
2637988 GCAAGATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 11 0.48
27 6 0.26
28 6 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
TATTTTAAAAATATATATATAAATATA
Found at i:2641778 original size:2 final size:2
Alignment explanation
Indices: 2641771--2641797 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2641761 ATCATGGTAA
2641771 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
2641798 AACCTGCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2643319 original size:24 final size:24
Alignment explanation
Indices: 2643287--2643333 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
2643277 TTTTTTTAAA
* *
2643287 AATTATATTTTTAATTATTAATATT
1 AATTATATTTATAATCA-TAATATT
2643312 AATT-TATTTATAATCATAATAT
1 AATTATATTTATAATCATAATAT
2643334 GATATGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
AATTATATTTATAATCATAATATT
Found at i:2643487 original size:15 final size:15
Alignment explanation
Indices: 2643467--2643502 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
2643457 TACCAAGTTT
*
2643467 GATAAAACAAACATC
1 GATAAAACAAACATA
2643482 GATAAAACAAACATA
1 GATAAAACAAACATA
2643497 GATAAA
1 GATAAA
2643503 GAGTTACATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.14, G:0.08, T:0.14
Consensus pattern (15 bp):
GATAAAACAAACATA
Found at i:2648260 original size:21 final size:19
Alignment explanation
Indices: 2648224--2648262 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
2648214 ATTCGTAGTA
*
2648224 TCACATATATGTATTTGAT
1 TCACATATATGAATTTGAT
2648243 TCACATAAGTATGAATTTGA
1 TCACAT-A-TATGAATTTGA
2648263 AATAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 10 0.59
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (19 bp):
TCACATATATGAATTTGAT
Found at i:2649540 original size:174 final size:174
Alignment explanation
Indices: 2649206--2649541 Score: 374
Period size: 174 Copynumber: 1.9 Consensus size: 174
2649196 TATAACTACC
* * * *
2649206 AGTATATAATATATTTATACTGACGAATATTTATATACCGTTAGAAAAAGTTTACCTATATCGAC
1 AGTATATAACATATTTATACTGACGAATAATTATATACCATCAGAAAAAGTTTACCTATATCGAC
* * * * * * *
2649271 AGATTTACAAAGTGTTGGTATAGGCACTGTCTATACTGACAATAACAAAAATCCGTTAGTATAGG
66 AGATTTACAAAGTGTTGGTAAAGACACTGTATATACTGACAATAACAAAAAACCATTAGTAAAGC
* * * *
2649336 TTCTTTTTACTTATATAAGTTGATCGTCAGTATAGAAAAGTGTT
131 CTCTTTTTACTGATACAAGTTGACCGTCAGTATAGAAAAGTGTT
* * * * *
2649380 AGTATATAGCATATTTATACTGATGGATAATTGTATACCATCAGAAAAAGTTTATCTATATCGAC
1 AGTATATAACATATTTATACTGACGAATAATTATATACCATCAGAAAAAGTTTACCTATATCGAC
* * **
2649445 -GATTATATAAAGTGTTGGTAAAGATA-TGGTATATTA-TGACAATATTAAAAAACCATTAGTAA
66 AGATT-TACAAAGTGTTGGTAAAGACACT-GTATA-TACTGACAATAACAAAAAACCATTAGT-A
* *
2649507 AAGCCTC-TTTTACTGATGCAATTTGACCGTCAGTA
127 AAGCCTCTTTTTACTGATACAAGTTGACCGTCAGTA
2649542 CAATCAAGCA
Statistics
Matches: 132, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
173 5 0.04
174 120 0.91
175 7 0.05
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (174 bp):
AGTATATAACATATTTATACTGACGAATAATTATATACCATCAGAAAAAGTTTACCTATATCGAC
AGATTTACAAAGTGTTGGTAAAGACACTGTATATACTGACAATAACAAAAAACCATTAGTAAAGC
CTCTTTTTACTGATACAAGTTGACCGTCAGTATAGAAAAGTGTT
Found at i:2659284 original size:14 final size:14
Alignment explanation
Indices: 2659265--2659291 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2659255 AATATATTAG
2659265 ATTTTAATATTAAT
1 ATTTTAATATTAAT
2659279 ATTTTAATATTAA
1 ATTTTAATATTAA
2659292 AAATTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTTTAATATTAAT
Found at i:2663273 original size:149 final size:150
Alignment explanation
Indices: 2663081--2663376 Score: 404
Period size: 149 Copynumber: 2.0 Consensus size: 150
2663071 ATATTAATAT
* *
2663081 TAAAAAACTAAAAGTTTCAATAAATTTTAACAAATATTGATTTTAAAGAACATAAATAGAAAAAA
1 TAAAAAACTAAAAGTTTCAATAAATTTTAACAAATAATGATTTTAAAAAACATAAATAGAAAAAA
* *
2663146 ATTAAAA-GTCAGAAATCCAT-AAAAAA-TTAAGCAA-TCAAAAGTCTATTGTAATAAAAAATTA
66 A-TAAAATGTCAAAAATCCATAAAAAAAGTTAAGCAACT-AAAAGTCTATTGTAATAAAAAATCA
*
2663207 TAAATTACAAGAAAATCATTAA
129 TAAATCACAAGAAAATCATTAA
*
2663229 TAAAAAACATTAAAAGTTTTAATAAA-TTTAACAAATAATGATTTTAAAAAACATAAATAGAAAA
1 TAAAAAAC--TAAAAGTTTCAATAAATTTTAACAAATAATGATTTTAAAAAACATAAATAGAAAA
* * * * *
2663293 AAATAAAATGTCAAAAATTCATAAAAAAAAGTTAGGCAACTAAAAGTTTATTGTGATGAAAAATC
64 AAATAAAATGTCAAAAATCCAT-AAAAAAAGTTAAGCAACTAAAAGTCTATTGTAATAAAAAATC
*
2663358 ATAAATCCCAAGAAAATCA
128 ATAAATCACAAGAAAATCA
2663377 ATGGTCAAAG
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
148 13 0.10
149 50 0.39
150 15 0.12
151 6 0.05
152 44 0.34
153 1 0.01
ACGTcount: A:0.57, C:0.08, G:0.07, T:0.27
Consensus pattern (150 bp):
TAAAAAACTAAAAGTTTCAATAAATTTTAACAAATAATGATTTTAAAAAACATAAATAGAAAAAA
ATAAAATGTCAAAAATCCATAAAAAAAGTTAAGCAACTAAAAGTCTATTGTAATAAAAAATCATA
AATCACAAGAAAATCATTAA
Found at i:2668667 original size:25 final size:22
Alignment explanation
Indices: 2668630--2668693 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 22
2668620 AGAGGGATAA
*
2668630 AATTTATATAAAATTTTTAAAGT
1 AATTTATAAAAAATTTTTAAA-T
2668653 GAAGTTTATAAAAAAGTTTTTAAAT
1 -AA-TTTATAAAAAA-TTTTTAAAT
2668678 AATTTAATAAAAAATT
1 AATTT-ATAAAAAATT
2668694 CAAATTGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
23 5 0.14
24 12 0.33
25 11 0.31
26 8 0.22
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (22 bp):
AATTTATAAAAAATTTTTAAAT
Found at i:2670889 original size:58 final size:59
Alignment explanation
Indices: 2670826--2670987 Score: 163
Period size: 58 Copynumber: 2.7 Consensus size: 59
2670816 TGCTTTTGTA
*
2670826 AAAGGAAAATTAATACTTTCAATTTTTTCTCAAAAATATTTTTCTTGTTAAACTTT-TTT
1 AAAGGAAAATTGATACTTTCAATTTTTTCTCAAAAATATTTTTCTTGTTAAA-TTTATTT
* * * * *
2670885 -AAGGAAAATTGGTAC-TTCTAATTTTTCCTC-AAAATGTTCTTTTTTTTTAAATTTAATTT
1 AAAGGAAAATTGATACTTTC-AATTTTTTCTCAAAAATATT-TTTCTTGTTAAATTT-ATTT
* *
2670944 CAAAGAAAAATTGATACTTTCAACTTTTTC-CTAAAAATATTTTT
1 -AAAGGAAAATTGATACTTTCAATTTTTTCTC-AAAAATATTTTT
2670988 AAAATTTTTT
Statistics
Matches: 83, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
57 13 0.16
58 33 0.40
59 3 0.04
60 1 0.01
61 23 0.28
62 10 0.12
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (59 bp):
AAAGGAAAATTGATACTTTCAATTTTTTCTCAAAAATATTTTTCTTGTTAAATTTATTT
Found at i:2671354 original size:73 final size:73
Alignment explanation
Indices: 2671118--2671338 Score: 272
Period size: 73 Copynumber: 3.0 Consensus size: 73
2671108 TTTAACACTT
** * * *
2671118 TTTTATTTTTAAGGGAAATTGATACTTTCAA-TTCTCTCCC-AAAAT-GCTTTTGAAAAATTTTT
1 TTTTATTTTTAAGAAAAATTGATACTTTCAACTT-TTTCCCAAAAATATCTTTTG-AAAACTTTT
2671180 ATTTTAGAAA
64 ATTTTAGAAA
*
2671190 TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATCTTTTGAAAACTTTTAT
1 TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCCCAAAAATATCTTTTGAAAACTTTTAT
2671255 TTTAGAAA
66 TTTAGAAA
* * * * *
2671263 TTTTATTTTTTAGAAAAATTGTTACTTTCAA-TTTTTCCCTAAAAATATTTTTTTG-AGAGTTTT
1 TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCCC-AAAAATA-TCTTTTGAAAACTTTT
2671326 ATTTTAGAAA
64 ATTTTAGAAA
2671336 TTT
1 TTT
2671339 CATTAAAAAG
Statistics
Matches: 132, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
72 40 0.30
73 80 0.61
74 12 0.09
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.50
Consensus pattern (73 bp):
TTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCCCAAAAATATCTTTTGAAAACTTTTAT
TTTAGAAA
Found at i:2671367 original size:23 final size:23
Alignment explanation
Indices: 2671340--2671384 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
2671330 TAGAAATTTC
*
2671340 ATTAAAAAGAAAAATAAATTAAA
1 ATTAAAAAGAAAAAAAAATTAAA
**
2671363 ATTAAAATTAAAAAAAAATTAA
1 ATTAAAAAGAAAAAAAAATTAA
2671385 GAATACCTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (23 bp):
ATTAAAAAGAAAAAAAAATTAAA
Found at i:2671368 original size:11 final size:12
Alignment explanation
Indices: 2671349--2671389 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
2671339 CATTAAAAAG
2671349 AAAAAT-AAATT
1 AAAAATAAAATT
*
2671360 AAAATTAAAATT
1 AAAAATAAAATT
2671372 AAAAA-AAAATT
1 AAAAATAAAATT
*
2671383 AAGAATA
1 AAAAATA
2671390 CCTAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:2671429 original size:17 final size:16
Alignment explanation
Indices: 2671409--2671453 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
2671399 TCTAATTTAG
2671409 AAATAATAATAATAATA
1 AAATAATAATAA-AATA
2671426 AAAT-A-AATAAAATA
1 AAATAATAATAAAATA
2671440 AAATAATTAATAAA
1 AAATAA-TAATAAA
2671454 TGAAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 8 0.32
15 6 0.24
16 1 0.04
17 10 0.40
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATAATAATAAAATA
Found at i:2671430 original size:14 final size:14
Alignment explanation
Indices: 2671413--2671452 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
2671403 ATTTAGAAAT
2671413 AATAATAATAATAA
1 AATAATAATAATAA
2671427 AATAAATAA-AATAA
1 AAT-AATAATAATAA
2671441 AATAATTAATAA
1 AATAA-TAATAA
2671453 ATGAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.09
14 14 0.61
15 7 0.30
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AATAATAATAATAA
Found at i:2671475 original size:26 final size:26
Alignment explanation
Indices: 2671409--2671469 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
2671399 TCTAATTTAG
*
2671409 AAATAATAATAA-TAATAAAATAAATA
1 AAATAA-AATAATTAATAAAATAAAGA
2671435 AAATAAAATAATTAAT-AAATGAAAGA
1 AAATAAAATAATTAATAAAAT-AAAGA
2671461 AAA-AAAATA
1 AAATAAAATA
2671470 CCTTAACGCG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
25 15 0.47
26 17 0.53
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (26 bp):
AAATAAAATAATTAATAAAATAAAGA
Found at i:2672245 original size:8 final size:7
Alignment explanation
Indices: 2672234--2672346 Score: 72
Period size: 7 Copynumber: 15.6 Consensus size: 7
2672224 AAAAAATATT
2672234 AATAGATA
1 AATA-ATA
*
2672242 AATAAGA
1 AATAATA
2672249 AATAAATA
1 AAT-AATA
*
2672257 AATATATT
1 AATA-ATA
2672265 AATAGATA
1 AATA-ATA
2672273 AATAATA
1 AATAATA
*
2672280 AAAAATA
1 AATAATA
*
2672287 TTAACAGATA
1 --AATA-ATA
2672297 AATAATA
1 AATAATA
*
2672304 AAAAATA
1 AATAATA
*
2672311 TATTAAT-
1 -AATAATA
2672318 AATAATA
1 AATAATA
2672325 AATAA-A
1 AATAATA
2672331 AATAA-A
1 AATAATA
2672337 AATAA-A
1 AATAATA
2672343 AATA
1 AATA
2672347 CTAATGAGCT
Statistics
Matches: 86, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
6 22 0.26
7 29 0.34
8 29 0.34
9 3 0.03
10 3 0.03
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.27
Consensus pattern (7 bp):
AATAATA
Found at i:2672265 original size:31 final size:29
Alignment explanation
Indices: 2672215--2672338 Score: 120
Period size: 31 Copynumber: 4.4 Consensus size: 29
2672205 AAAGTAAAAA
*
2672215 AAAAGATAAAAAAAATATTAATAGATAAAT
1 AAAA-ATAAAAAATATATTAATAGATAAAT
2672245 AAGAAATAAATAAATATATTAATAGATAAAT
1 AA-AAATAAA-AAATATATTAATAGATAAAT
*
2672276 ---AAT-AAAAA-ATATTAACAGATAAAT
1 AAAAATAAAAAATATATTAATAGATAAAT
*
2672300 ---AATAAAAAATATATTAATAATAATAAAT
1 AAAAATAAAAAATATATTAAT-A-GATAAAT
2672328 AAAAATAAAAA
1 AAAAATAAAAA
2672339 TAAAAATACT
Statistics
Matches: 81, Mismatches: 4, Indels: 17
0.79 0.04 0.17
Matches are distributed among these distances:
24 18 0.22
25 8 0.10
26 9 0.11
27 4 0.05
28 6 0.07
30 7 0.09
31 29 0.36
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.26
Consensus pattern (29 bp):
AAAAATAAAAAATATATTAATAGATAAAT
Found at i:2672287 original size:24 final size:25
Alignment explanation
Indices: 2672248--2672334 Score: 110
Period size: 24 Copynumber: 3.6 Consensus size: 25
2672238 GATAAATAAG
*
2672248 AAATAA-ATAAATATATTAATAGAT
1 AAATAATAAAAATATATTAATAGAT
*
2672272 AAATAATAAAAA-ATATTAACAGAT
1 AAATAATAAAAATATATTAATAGAT
2672296 AAATAATAAAAAATATATTAATA-AT
1 AAATAAT-AAAAATATATTAATAGAT
2672321 -AATAAATAAAAATA
1 AAAT-AATAAAAATA
2672335 AAAATAAAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
24 34 0.61
25 14 0.25
26 8 0.14
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.29
Consensus pattern (25 bp):
AAATAATAAAAATATATTAATAGAT
Found at i:2672335 original size:55 final size:55
Alignment explanation
Indices: 2672220--2672338 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 55
2672210 AAAAAAAAAG
* * *
2672220 ATAA-AAAAAATATTAATAGATAAATAAGAAATAAATAAATATATTAATAGATAA
1 ATAATAAAAAATATTAACAGATAAATAAGAAATAAATAAATATAATAATAAATAA
* *
2672274 ATAATAAAAAATATTAACAGATAAATAATAAA-AAATATATTAATAATAATAAATAA
1 ATAATAAAAAATATTAACAGATAAATAAGAAATAAATA-AAT-ATAATAATAAATAA
2672330 A-AATAAAAA
1 ATAATAAAAA
2672339 TAAAAATACT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
54 9 0.16
55 35 0.61
56 13 0.23
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (55 bp):
ATAATAAAAAATATTAACAGATAAATAAGAAATAAATAAATATAATAATAAATAA
Found at i:2672346 original size:28 final size:28
Alignment explanation
Indices: 2672190--2672351 Score: 70
Period size: 28 Copynumber: 5.7 Consensus size: 28
2672180 TCGAAAATTG
*
2672190 ATAAAAAAAAAAGATAAAGTAA-AAA-AAAA
1 ATAAAAATAAAA-AT-AA-TAATAAATAAAA
*
2672219 GATAAAAA-AAATATTAATAGATAAATAAGAA
1 -ATAAAAATAAA-AATAATA-ATAAATAA-AA
* * *
2672250 AT--AAATAAATATATTAATAGATAAATA
1 ATAAAAATAAAAATAATAATAAATAAA-A
* * *
2672277 AT-AAAA-AATATTAACAGATAAATAATAA
1 ATAAAAATAAAAATAATA-ATAAATAA-AA
* **
2672305 A-AAATATATTAATAATAATAAATAAAA
1 ATAAAAATAAAAATAATAATAAATAAAA
*
2672332 ATAAAAATAAAAATACTAAT
1 ATAAAAATAAAAATAATAAT
2672352 GAGCTTACCC
Statistics
Matches: 100, Mismatches: 19, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
26 1 0.01
27 20 0.20
28 47 0.47
29 18 0.18
30 12 0.12
31 2 0.02
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (28 bp):
ATAAAAATAAAAATAATAATAAATAAAA
Found at i:2672624 original size:44 final size:44
Alignment explanation
Indices: 2672560--2672768 Score: 260
Period size: 44 Copynumber: 4.8 Consensus size: 44
2672550 GATTTTGAGT
* * *
2672560 AAAATAAACAAAGCTCCTCTAATCAAAGGCTCACCGACTTTGAA
1 AAAATAAACAAAGCTTCTCTAAGCAGAGGCTCACCGACTTTGAA
* *
2672604 AAAATAAATAAAGCTTCTCTAAGCAGAGGCTCACCGACTTTGAC
1 AAAATAAACAAAGCTTCTCTAAGCAGAGGCTCACCGACTTTGAA
* * *
2672648 AAAATAAACAAAGCTCCTCTAAGCAGAGGCTTAGCGACTTTGAA
1 AAAATAAACAAAGCTTCTCTAAGCAGAGGCTCACCGACTTTGAA
* * * *
2672692 AAAATAAATAAAAC-TCTTCTAAGCAGAGGCTCAACAACTTTTG-A
1 AAAATAAACAAAGCTTC-TCTAAGCAGAGGCTCACCGAC-TTTGAA
**
2672736 AAAATAAACAAAGCTTCTCTAAATAGAGGCTCA
1 AAAATAAACAAAGCTTCTCTAAGCAGAGGCTCA
2672769 ATGACTTTTG
Statistics
Matches: 142, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
43 1 0.01
44 135 0.95
45 6 0.04
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.22
Consensus pattern (44 bp):
AAAATAAACAAAGCTTCTCTAAGCAGAGGCTCACCGACTTTGAA
Found at i:2672678 original size:88 final size:88
Alignment explanation
Indices: 2672560--2672768 Score: 296
Period size: 88 Copynumber: 2.4 Consensus size: 88
2672550 GATTTTGAGT
* * *
2672560 AAAATAAACAAAGCTCCTCTAATCAAAGGCTCACCGACTTTGAAAAAATAAATAAAGCT-TCTCT
1 AAAATAAACAAAGCTCCTCTAAACAGAGGCTCACCGACTTTGAAAAAATAAATAAAACTCT-TCT
* *
2672624 AAGCAGAGGCTCACCGAC-TTTGA
65 AAGCAGAGGCTCAACAACTTTTGA
* * *
2672647 CAAAATAAACAAAGCTCCTCTAAGCAGAGGCTTAGCGACTTTGAAAAAATAAATAAAACTCTTCT
1 -AAAATAAACAAAGCTCCTCTAAACAGAGGCTCACCGACTTTGAAAAAATAAATAAAACTCTTCT
2672712 AAGCAGAGGCTCAACAACTTTTGA
65 AAGCAGAGGCTCAACAACTTTTGA
* *
2672736 AAAATAAACAAAGCTTCTCTAAATAGAGGCTCA
1 AAAATAAACAAAGCTCCTCTAAACAGAGGCTCA
2672769 ATGACTTTTG
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
88 102 0.94
89 6 0.06
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.22
Consensus pattern (88 bp):
AAAATAAACAAAGCTCCTCTAAACAGAGGCTCACCGACTTTGAAAAAATAAATAAAACTCTTCTA
AGCAGAGGCTCAACAACTTTTGA
Found at i:2672881 original size:88 final size:86
Alignment explanation
Indices: 2672720--2672881 Score: 209
Period size: 87 Copynumber: 1.9 Consensus size: 86
2672710 CTAAGCAGAG
* * * * * *
2672720 GCTCAACAACTTTTGAAAAATAAACAAAGCTTCTCTAAATAGAGGCTCAATGACTTTTGGAAAGT
1 GCTCAACAACTTTTAAAAAATAAACAAAGCTCCTCTAAACAAAGGCACAATAACTTTTGGAAAGT
2672785 AAATTGCTCCTTTCAACATAA
66 AAATTGCTCCTTTCAACATAA
* * *
2672806 GCTCCACAACTTTTAAAGAAATAAACAAAGCTCCTCTAAGCAAAGGCAACCATAACTTTCT-GAA
1 GCTCAACAACTTTTAAA-AAATAAACAAAGCTCCTCTAAACAAAGGC-ACAATAACTTT-TGGAA
2672870 AGTAAATTGCTC
63 AGTAAATTGCTC
2672882 TTGTAAGAAG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 15 0.23
87 25 0.39
88 23 0.36
89 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (86 bp):
GCTCAACAACTTTTAAAAAATAAACAAAGCTCCTCTAAACAAAGGCACAATAACTTTTGGAAAGT
AAATTGCTCCTTTCAACATAA
Found at i:2673982 original size:16 final size:16
Alignment explanation
Indices: 2673961--2673991 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
2673951 ATTTTTTCAA
2673961 ATTTTTTTTATTTTTT
1 ATTTTTTTTATTTTTT
2673977 ATTTTTTTTATTTTT
1 ATTTTTTTTATTTTT
2673992 CAAGCATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (16 bp):
ATTTTTTTTATTTTTT
Found at i:2679338 original size:18 final size:17
Alignment explanation
Indices: 2679301--2679344 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
2679291 TAAGTCTGTA
* *
2679301 TTTTTTTTTCTTTTCTT
1 TTTTTTTTTCTCTTCAT
2679318 TTTTCTTTTTCTCTTCAT
1 TTTT-TTTTTCTCTTCAT
2679336 TTTATTTTT
1 TTT-TTTTT
2679345 ATTTTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 4 0.17
18 18 0.78
19 1 0.04
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTTTCTCTTCAT
Found at i:2679344 original size:6 final size:6
Alignment explanation
Indices: 2679335--2679396 Score: 56
Period size: 6 Copynumber: 10.2 Consensus size: 6
2679325 TTTCTCTTCA
*
2679335 TTTTAT TTTTAT TTTT-T TAATATAT TTTTAT TTTT-T ATTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT T--TTTAT TTTTAT TTTTAT -TTTTAT TTTTAT
* *
2679384 CTTTAT TATTAT T
1 TTTTAT TTTTAT T
2679397 ATTTTATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
5 3 0.07
6 38 0.83
7 3 0.07
8 2 0.04
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:2679362 original size:19 final size:19
Alignment explanation
Indices: 2679338--2679383 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
2679328 CTCTTCATTT
2679338 TATTTTTATTTTTTTAATA
1 TATTTTTATTTTTTTAATA
* *
2679357 TATTTTTA-TTTTTTATTT
1 TATTTTTATTTTTTTAATA
2679375 TATTTTTAT
1 TATTTTTAT
2679384 CTTTATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (19 bp):
TATTTTTATTTTTTTAATA
Found at i:2679395 original size:18 final size:17
Alignment explanation
Indices: 2679318--2679396 Score: 61
Period size: 17 Copynumber: 4.4 Consensus size: 17
2679308 TTCTTTTCTT
* * *
2679318 TTTTCTTTTTCTCTTCA
1 TTTTATTTTTATCTTTA
*
2679335 TTTTATTTTTAT-TTTT
1 TTTTATTTTTATCTTTA
*
2679351 TTAATATATTTTTATTTTTTA
1 TT--T-TATTTTTA-TCTTTA
2679372 TTTTATTTTTATCTTTA
1 TTTTATTTTTATCTTTA
2679389 TTATTATT
1 TT-TTATT
2679397 ATTTTATATA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 4 0.08
17 17 0.34
18 14 0.28
19 9 0.18
20 1 0.02
21 5 0.10
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATCTTTA
Found at i:2679572 original size:21 final size:21
Alignment explanation
Indices: 2679515--2679592 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 21
2679505 CTTTTTTTTC
*
2679515 CTGTTAATATTTATGTAA-TTAT
1 CTGTTAAT-TTT-TTTAATTTAT
2679537 CTGTT-ATTTAATTTTAATTTAT
1 CTGTTAATTT--TTTTAATTTAT
*
2679559 CTGTTAATTTTTTTGATTTAT
1 CTGTTAATTTTTTTAATTTAT
*
2679580 CTGATTTATTTTT
1 CTG-TTAATTTTT
2679593 GTTTGATTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
20 2 0.04
21 19 0.40
22 23 0.48
23 4 0.08
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.63
Consensus pattern (21 bp):
CTGTTAATTTTTTTAATTTAT
Found at i:2680446 original size:14 final size:14
Alignment explanation
Indices: 2680409--2680460 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
2680399 CGCGTCAAGT
*
2680409 TTTTTTTTTATTTA
1 TTTTTATTTATTTA
*
2680423 --TTTGTTTATTTA
1 TTTTTATTTATTTA
2680435 TTTTTATTTATTT-
1 TTTTTATTTATTTA
2680448 TTTTCTATTTATT
1 TTTT-TATTTATT
2680461 AGATTATGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 11 0.33
13 4 0.12
14 18 0.55
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTTTATTTATTTA
Found at i:2680450 original size:12 final size:12
Alignment explanation
Indices: 2680411--2680451 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
2680401 CGTCAAGTTT
2680411 TTTTTTTATTTA
1 TTTTTTTATTTA
*
2680423 TTTGTTTATTTA
1 TTTTTTTATTTA
2680435 --TTTTTATTTA
1 TTTTTTTATTTA
2680445 TTTTTTT
1 TTTTTTT
2680452 CTATTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 9 0.36
12 16 0.64
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (12 bp):
TTTTTTTATTTA
Found at i:2680649 original size:59 final size:57
Alignment explanation
Indices: 2680582--2681095 Score: 645
Period size: 59 Copynumber: 8.7 Consensus size: 57
2680572 ATAAAAATCA
* *
2680582 AAAAAAATATTTTTGGGCAAAAGTTGAAAGTATCATTTTTCCTTGAAAATCAAAGTTTC
1 AAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTC
* * *
2680641 AAAAAAATATTTTTGGGGAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
* * *
2680699 AAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTTC
1 ---AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAG-TTTC
*
2680762 TAAAAAAAAATATTTTTCGGGAAAAGTT-AGAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 ---AAAAAAATATTTTT-GGGAAAAGTTGA-AAGTATCAATTTTCCTTAAAAATAAAGTTTC
* ** *
2680823 AAGAAAACGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTC
* *
2680882 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
* *
2680940 AAAAAAATATTTTTGGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
*
2680998 -AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTC
1 AAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTC
* *
2681056 CAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTT
2681096 TCCTGCACAA
Statistics
Matches: 407, Mismatches: 31, Indels: 34
0.86 0.07 0.07
Matches are distributed among these distances:
57 50 0.12
58 116 0.29
59 129 0.32
60 6 0.01
61 49 0.12
62 7 0.02
63 49 0.12
64 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (57 bp):
AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC
Found at i:2687076 original size:73 final size:73
Alignment explanation
Indices: 2686960--2687152 Score: 205
Period size: 73 Copynumber: 2.6 Consensus size: 73
2686950 TTTGAACATT
* * * * * *
2686960 TTTTATTTTCAAAGGAAATTGATACTTTCAA-TTCTCCCCCAAAAT-GCTTTTGAAAAATTTTTT
1 TTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTCCCAAAAATAGCTTTTG-AAAA-CTTTT
2687023 ATTTTCA-AAA
64 ATTTT-AGAAA
* ** *
2687033 TTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGGAAACTTTTAT
1 TTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTCCCAAAAATAGCTTTTGAAAACTTTTAT
2687098 TTTAGAAA
66 TTTAGAAA
* * *
2687106 ATTTATTTTT-TAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATA
1 TTTTATTTTTAAAG-AAAATTGATACTTTCAACTTTTTCCCAAAAATA
2687153 TTTTTTTTGA
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
72 3 0.03
73 81 0.79
74 13 0.13
75 5 0.05
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (73 bp):
TTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTCCCAAAAATAGCTTTTGAAAACTTTTAT
TTTAGAAA
Found at i:2687116 original size:16 final size:16
Alignment explanation
Indices: 2687078--2687122 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
2687068 TTCTCAAAAA
* *
2687078 TATTTTTTGGAAACTT
1 TATTTTTTAGAAAATT
*
2687094 T-TATTTTAGAAAATT
1 TATTTTTTAGAAAATT
2687109 TATTTTTTAGAAAA
1 TATTTTTTAGAAAA
2687123 ATTGATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (16 bp):
TATTTTTTAGAAAATT
Found at i:2687181 original size:73 final size:73
Alignment explanation
Indices: 2687019--2687181 Score: 224
Period size: 73 Copynumber: 2.2 Consensus size: 73
2687009 TTGAAAAATT
2687019 TTTTATTTTCA-AAATTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTT
1 TTTTATTTT-AGAAATTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTT
2687083 TTTGGAAAC
65 TTTGGAAAC
* *
2687092 TTTTATTTTAGAAAATTTATTTTT-TAGAAAAATTGATACTTTCAACTTTTTC-CTAAAAATATT
1 TTTTATTTTAGAAATTTTATTTTTAAAG-AAAATTGATACTTTCAACTTTTTCTC-AAAAATA-T
* * *
2687155 TTTTTTGAGAG
63 TTTTTGGAAAC
2687166 TTTTATTTTAGAAATT
1 TTTTATTTTAGAAATT
2687182 GCATTAAAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
72 4 0.05
73 52 0.65
74 24 0.30
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (73 bp):
TTTTATTTTAGAAATTTTATTTTTAAAGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTT
TTGGAAAC
Found at i:2687219 original size:6 final size:6
Alignment explanation
Indices: 2687210--2687236 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
2687200 AAATAAAACA
2687210 AAATTT AAATTT AAATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAA
2687237 AAATTTAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:2688027 original size:14 final size:14
Alignment explanation
Indices: 2688010--2688044 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
2688000 AGATAAAGTC
2688010 AAAAAAAAAAAGAT
1 AAAAAAAAAAAGAT
* *
2688024 AAAAAATAATAGAT
1 AAAAAAAAAAAGAT
2688038 AAAAAAA
1 AAAAAAA
2688045 TATTAATAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (14 bp):
AAAAAAAAAAAGAT
Found at i:2688045 original size:15 final size:15
Alignment explanation
Indices: 2688010--2688046 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
2688000 AGATAAAGTC
2688010 AAAAAAA-AAAAGAT
1 AAAAAAATAAAAGAT
*
2688024 -AAAAAATAATAGAT
1 AAAAAAATAAAAGAT
2688038 AAAAAAATA
1 AAAAAAATA
2688047 TTAATAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 6 0.30
14 6 0.30
15 8 0.40
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (15 bp):
AAAAAAATAAAAGAT
Found at i:2688080 original size:30 final size:30
Alignment explanation
Indices: 2688044--2688100 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
2688034 AGATAAAAAA
* *
2688044 ATATTAATAGATAAATAAGAAATATATAAT
1 ATATTAATAGATAAATAAAAAAAATATAAT
2688074 ATATTAATAGATAAATAAAAAAAATAT
1 ATATTAATAGATAAATAAAAAAAATAT
2688101 TAACAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (30 bp):
ATATTAATAGATAAATAAAAAAAATATAAT
Found at i:2688131 original size:19 final size:20
Alignment explanation
Indices: 2688076--2688153 Score: 72
Period size: 19 Copynumber: 3.9 Consensus size: 20
2688066 TATATAATAT
2688076 ATTAATAGATAAATAAAAAAAA
1 ATTAATAGATAAAT--AAAAAA
* *
2688098 TATTAACAGAAAAATAAAAAA
1 -ATTAATAGATAAATAAAAAA
*
2688119 ATTAATA-ATAAATAATAATA
1 ATTAATAGATAAATAA-AAAA
2688139 A-TAATA-ATAAATAAA
1 ATTAATAGATAAATAAA
2688154 TACAAATACA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
18 1 0.02
19 20 0.41
20 10 0.20
21 6 0.12
23 12 0.24
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.26
Consensus pattern (20 bp):
ATTAATAGATAAATAAAAAA
Found at i:2688155 original size:23 final size:22
Alignment explanation
Indices: 2688029--2688153 Score: 73
Period size: 22 Copynumber: 5.5 Consensus size: 22
2688019 AAGATAAAAA
* *
2688029 ATAATAGATAAAAA-AATATTA
1 ATAATAAATAAAAATAATAATA
2688050 ATAGATAAATAAGAAATATATAATA
1 ATA-ATAAATAA-AAATA-ATAATA
*
2688075 TATTAATAGATAAATAA-AA-AA-A
1 -A-TAATAAATAAA-AATAATAATA
* * *
2688097 ATATTAACAGAAAAATAA-AAAA
1 ATAATAA-ATAAAAATAATAATA
2688119 ATTAAT-AATAAATAATAATAATA
1 A-TAATAAATAAA-AATAATAATA
2688142 ATAATAAATAAA
1 ATAATAAATAAA
2688154 TACAAATACA
Statistics
Matches: 81, Mismatches: 9, Indels: 26
0.70 0.08 0.22
Matches are distributed among these distances:
20 6 0.07
21 16 0.20
22 20 0.25
23 18 0.22
24 2 0.02
25 7 0.09
26 10 0.12
27 2 0.02
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (22 bp):
ATAATAAATAAAAATAATAATA
Found at i:2688161 original size:23 final size:22
Alignment explanation
Indices: 2688028--2688161 Score: 73
Period size: 23 Copynumber: 5.9 Consensus size: 22
2688018 AAAGATAAAA
* *
2688028 AATAATAGATAAA-AAAATATT
1 AATAATAAATAAATAAAATAAT
2688049 AATAGATAAATAAGA-AATATATAAT
1 AATA-ATAAATAA-ATAA-A-ATAAT
* *
2688074 ATATTAATAGATAAATAAAAAAAAT
1 A-A-TAATAAATAAAT-AAAATAAT
* *
2688099 ATTAACAGAA-AAATAAAA-AA-
1 AATAATA-AATAAATAAAATAAT
*
2688119 ATTAAT-AATAAATAATAATAAT
1 AATAATAAATAAATAA-AATAAT
2688141 AATAATAAATAAATACAAATA
1 AATAATAAATAAATA-AAATA
2688162 CAAATGAACT
Statistics
Matches: 89, Mismatches: 9, Indels: 28
0.71 0.07 0.22
Matches are distributed among these distances:
18 2 0.02
19 6 0.07
20 7 0.08
21 8 0.09
22 16 0.18
23 23 0.26
24 3 0.03
25 11 0.12
26 9 0.10
27 4 0.04
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (22 bp):
AATAATAAATAAATAAAATAAT
Found at i:2691122 original size:16 final size:16
Alignment explanation
Indices: 2691098--2691130 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2691088 AGAAATGATT
2691098 AAATAAAAATTAAAAA
1 AAATAAAAATTAAAAA
*
2691114 AAATTAAAATTAAAAA
1 AAATAAAAATTAAAAA
2691130 A
1 A
2691131 TTTTGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AAATAAAAATTAAAAA
Found at i:2695244 original size:26 final size:27
Alignment explanation
Indices: 2695208--2695269 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 27
2695198 TTAATTCGTG
2695208 AATAT-TAAACGAACATATTTAT-AAA
1 AATATATAAACGAACATATTTATGAAA
* * *
2695233 AATATATAAACGAATATTTTTATGAAT
1 AATATATAAACGAACATATTTATGAAA
*
2695260 AATAAATAAA
1 AATATATAAA
2695270 TCATAACCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 5 0.16
26 15 0.48
27 11 0.35
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (27 bp):
AATATATAAACGAACATATTTATGAAA
Found at i:2695260 original size:24 final size:26
Alignment explanation
Indices: 2695206--2695265 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 26
2695196 AATTAATTCG
2695206 TGAATAT-TAAACGAACATATTTATA
1 TGAATATATAAACGAACATATTTATA
** *
2695231 AAAATATATAAACG-A-ATATTTTTA
1 TGAATATATAAACGAACATATTTATA
2695255 TGAATA-ATAAA
1 TGAATATATAAA
2695266 TAAATCATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
23 5 0.17
24 12 0.41
25 6 0.21
26 6 0.21
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (26 bp):
TGAATATATAAACGAACATATTTATA
Found at i:2695294 original size:14 final size:15
Alignment explanation
Indices: 2695263--2695310 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
2695253 TATGAATAAT
*
2695263 AAATAAATCATAACC
1 AAATAAATCATAAAC
*
2695278 AAATAAAT-TTAAAC
1 AAATAAATCATAAAC
*
2695292 AAA-AAATCCTAAAC
1 AAATAAATCATAAAC
2695306 AAATA
1 AAATA
2695311 TAAATGAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 4 0.14
14 15 0.54
15 9 0.32
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATAAATCATAAAC
Found at i:2695454 original size:11 final size:11
Alignment explanation
Indices: 2695438--2695462 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2695428 AACGAATAAG
2695438 TTTTAAACAAA
1 TTTTAAACAAA
2695449 TTTTAAACAAA
1 TTTTAAACAAA
2695460 TTT
1 TTT
2695463 ATTTATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (11 bp):
TTTTAAACAAA
Found at i:2702942 original size:117 final size:115
Alignment explanation
Indices: 2702804--2703034 Score: 374
Period size: 117 Copynumber: 2.0 Consensus size: 115
2702794 ATTCTTGTGT
*
2702804 ATACACCGATTAAAGAATTAATTAATCATTTATTCATGTTGATTTCGAGCCATCATAA-ACATAT
1 ATACACCGAATAAAGAATTAATTAATCATTTATTCATGTTGATTTCGAGCCATCATAACACATAT
*
2702868 ATGATAGAAGCACTTGAGAAATTTTCTTTTCTAAGGCAAGATCATTGTTATGC
66 ATGATAGAAGCACTTGAGAAA-TTT-TTTTCTAAGCCAAGATCATT-TTATGC
* * *
2702921 ATACACCTAATAAAGAATTAATTAATCATTTATTCATGTTGATTTTGAGCCATCATAAGCATATA
1 ATACACCGAATAAAGAATTAATTAATCATTTATTCATGTTGATTTCGAGCCATCATAA-CACATA
2702986 TATGATAGAAGCACTTGAGAAATTTTTTTCTAAGCCAAGATCATTTTAT
65 TATGATAGAAGCACTTGAGAAATTTTTTTCTAAGCCAAGATCATTTTAT
2703035 TAAAGAGATA
Statistics
Matches: 107, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
116 4 0.04
117 74 0.69
118 3 0.03
119 26 0.24
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (115 bp):
ATACACCGAATAAAGAATTAATTAATCATTTATTCATGTTGATTTCGAGCCATCATAACACATAT
ATGATAGAAGCACTTGAGAAATTTTTTTCTAAGCCAAGATCATTTTATGC
Found at i:2704589 original size:31 final size:31
Alignment explanation
Indices: 2704551--2704614 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
2704541 ATATATGTGA
2704551 AAGTTTAAGATATAAAAAGGATGTGAATATC
1 AAGTTTAAGATATAAAAAGGATGTGAATATC
2704582 AAGTTTAAGATATAAAAAGGATGTGAATATC
1 AAGTTTAAGATATAAAAAGGATGTGAATATC
2704613 AA
1 AA
2704615 CCTCAACACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.50, C:0.03, G:0.19, T:0.28
Consensus pattern (31 bp):
AAGTTTAAGATATAAAAAGGATGTGAATATC
Found at i:2713552 original size:93 final size:94
Alignment explanation
Indices: 2713392--2713569 Score: 340
Period size: 93 Copynumber: 1.9 Consensus size: 94
2713382 AAATTACAAG
2713392 TTAAATATTAAAAATATATTAGATTAAGAAAAATTGATCATAATGGCGAGTAAAAGTATAAATGA
1 TTAAATATTAAAAATATATTAGATTAAGAAAAATTGATCATAATGGCGAGTAAAAGTATAAATGA
2713457 TATATATTACTTACATGCTAAATTATTGA
66 TATATATTACTTACATGCTAAATTATTGA
2713486 TTAAATATTAAAAATATATTAGATTAAG-AAAATTGATCATAATGGCGAGTAAAAGTATAAATGA
1 TTAAATATTAAAAATATATTAGATTAAGAAAAATTGATCATAATGGCGAGTAAAAGTATAAATGA
*
2713550 TATATATTACTTATATGCTA
66 TATATATTACTTACATGCTA
2713570 TTTAGGTATG
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
93 55 0.66
94 28 0.34
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (94 bp):
TTAAATATTAAAAATATATTAGATTAAGAAAAATTGATCATAATGGCGAGTAAAAGTATAAATGA
TATATATTACTTACATGCTAAATTATTGA
Found at i:2719406 original size:16 final size:16
Alignment explanation
Indices: 2719370--2719415 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
2719360 AATTTAAAAG
2719370 ATTTTTA-TATATTTA
1 ATTTTTATTATATTTA
*
2719385 AATTTTATTAT-TTTA
1 ATTTTTATTATATTTA
*
2719400 TATTTTTTTTATATTT
1 -ATTTTTATTATATTT
2719416 TATTATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 12 0.48
17 3 0.12
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTTTTATTATATTTA
Found at i:2721134 original size:50 final size:49
Alignment explanation
Indices: 2721080--2721212 Score: 140
Period size: 49 Copynumber: 2.7 Consensus size: 49
2721070 CATGAAAAAA
* *
2721080 TTTTAAAAATATTTGCAAAAATTTTACTTCAAAAATTTTTTATTTTTAAC
1 TTTTAAAAATATTTACAAAAATCTTAC-TCAAAAATTTTTTATTTTTAAC
* ** * * *
2721130 TTTTAAAAATGTTTATGAACATCTTACTCAAAAATTTTTTATTTTTTAT
1 TTTTAAAAATATTTACAAAAATCTTACTCAAAAATTTTTTATTTTTAAC
* ** * *
2721179 TTTTAAAAATGTTTATGAACATCTTACTCGAAAA
1 TTTTAAAAATATTTACAAAAATCTTACTCAAAAA
2721213 CGTAAATCAA
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 53 0.72
50 21 0.28
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (49 bp):
TTTTAAAAATATTTACAAAAATCTTACTCAAAAATTTTTTATTTTTAAC
Found at i:2721183 original size:49 final size:49
Alignment explanation
Indices: 2721103--2721212 Score: 184
Period size: 49 Copynumber: 2.2 Consensus size: 49
2721093 TGCAAAAATT
2721103 TTACTTCAAAAATTTTTTATTTTTAACTTTTAAAAATGTTTATGAACATC
1 TTAC-TCAAAAATTTTTTATTTTTAACTTTTAAAAATGTTTATGAACATC
* *
2721153 TTACTCAAAAATTTTTTATTTTTTATTTTTAAAAATGTTTATGAACATC
1 TTACTCAAAAATTTTTTATTTTTAACTTTTAAAAATGTTTATGAACATC
*
2721202 TTACTCGAAAA
1 TTACTCAAAAA
2721213 CGTAAATCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
49 53 0.93
50 4 0.07
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (49 bp):
TTACTCAAAAATTTTTTATTTTTAACTTTTAAAAATGTTTATGAACATC
Found at i:2721416 original size:15 final size:16
Alignment explanation
Indices: 2721386--2721421 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 16
2721376 TCAAATTATA
2721386 TATTTTTATTAATTTTT
1 TATTTTTA-TAATTTTT
2721403 TATTTTTA-AATTTTT
1 TATTTTTATAATTTTT
2721418 TATT
1 TATT
2721422 AAATAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.58
17 8 0.42
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTTTTATAATTTTT
Found at i:2722824 original size:7 final size:7
Alignment explanation
Indices: 2722814--2722851 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
2722804 CCTCTTTTTT
2722814 TTTTTCA
1 TTTTTCA
2722821 TTTTTCA
1 TTTTTCA
2722828 TTTTTCA
1 TTTTTCA
2722835 TTTTTCA
1 TTTTTCA
*
2722842 TATTTCA
1 TTTTTCA
2722849 TTT
1 TTT
2722852 ATGATTTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTTCA
Found at i:2722858 original size:21 final size:21
Alignment explanation
Indices: 2722814--2722859 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
2722804 CCTCTTTTTT
* *
2722814 TTTTTCATTTTTCATTTTTCA
1 TTTTTCATATTTCATTTATCA
*
2722835 TTTTTCATATTTCATTTATGA
1 TTTTTCATATTTCATTTATCA
2722856 TTTT
1 TTTT
2722860 GCATGGCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.11, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTCATATTTCATTTATCA
Found at i:2731889 original size:105 final size:105
Alignment explanation
Indices: 2731706--2731911 Score: 344
Period size: 105 Copynumber: 2.0 Consensus size: 105
2731696 ATATTTACTA
*
2731706 AGATTTTAGAGATTTAAATGCTGGAAAATTAAAAAAAAAATGATGGATTAATCATGAAGTCTAAT
1 AGATTTTAGAGATTTAAATGCTGGAAAATTAAAAAAAAAATGATGGATTAATCATGAAGCCTAAT
2731771 AATTTAAGATGAAATATGCCTTTTTTCGAAGCTTGCATTTG
66 AATTTAAGATGAAATATGCCTTTTTT-GAAGCTTGCATTTG
* * *
2731812 AGATTTTAGTAGATTTTAATGCTGGAAAA-T-AAAACAAAATGATGGATTAATCATGAAGCCTAG
1 AGATTTTAG-AGATTTAAATGCTGGAAAATTAAAAAAAAAATGATGGATTAATCATGAAGCCTAA
2731875 TAATTTAAGATGAAATATGCCTTTTTTGAAGCTTGCA
65 TAATTTAAGATGAAATATGCCTTTTTTGAAGCTTGCA
2731912 ATTGCTTCTT
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
104 10 0.11
105 57 0.60
106 10 0.11
107 18 0.19
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.34
Consensus pattern (105 bp):
AGATTTTAGAGATTTAAATGCTGGAAAATTAAAAAAAAAATGATGGATTAATCATGAAGCCTAAT
AATTTAAGATGAAATATGCCTTTTTTGAAGCTTGCATTTG
Found at i:2746531 original size:18 final size:18
Alignment explanation
Indices: 2746496--2746533 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
2746486 TCAAATCGAA
*
2746496 TTTATATTTTTATTAATT
1 TTTATATTTTTATAAATT
2746514 TTTATATATTTTA-AAATT
1 TTTATAT-TTTTATAAATT
2746532 TT
1 TT
2746534 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATATTTTTATAAATT
Found at i:2756467 original size:34 final size:33
Alignment explanation
Indices: 2756429--2756493 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
2756419 AAATTTTTTA
*
2756429 AATTTGATCTAAATTTAAATTTATTTTTTTAATT
1 AATTTAAT-TAAATTTAAATTTATTTTTTTAATT
* *
2756463 AATTTAATTTAATTTGAATTTATTTTTTTAA
1 AATTTAATTAAATTTAAATTTATTTTTTTAA
2756494 AATCAATCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (33 bp):
AATTTAATTAAATTTAAATTTATTTTTTTAATT
Found at i:2756712 original size:17 final size:17
Alignment explanation
Indices: 2756664--2756714 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
2756654 TTTTTATTTT
2756664 TATATTTAAATTTTAA-A
1 TATATTT-AATTTTAATA
* * *
2756681 TTTGATTCAAATTTAATA
1 TAT-ATTTAATTTTAATA
2756699 TATATTTAATTTTAAT
1 TATATTTAATTTTAAT
2756715 TTTAATTCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 20 0.77
18 6 0.23
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
TATATTTAATTTTAATA
Found at i:2757746 original size:18 final size:17
Alignment explanation
Indices: 2757711--2757744 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2757701 ATAATAATAT
2757711 TATTTAAATTTTAAAAA
1 TATTTAAATTTTAAAAA
2757728 TATTTAAATTTTAAAAA
1 TATTTAAATTTTAAAAA
2757745 ATTAAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTAAATTTTAAAAA
Found at i:2759183 original size:30 final size:31
Alignment explanation
Indices: 2759117--2759174 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
2759107 TTACAAGAGA
* *
2759117 TAATTCTAAATACCAAAAGAATTAGGAGTAC
1 TAATTCCAAATACAAAAAGAATTAGGAGTAC
*
2759148 TAATTCCAAATA-AAAAATAATTAGGAG
1 TAATTCCAAATACAAAAAGAATTAGGAG
2759175 CCTTAATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.52, C:0.10, G:0.12, T:0.26
Consensus pattern (31 bp):
TAATTCCAAATACAAAAAGAATTAGGAGTAC
Found at i:2763442 original size:22 final size:22
Alignment explanation
Indices: 2763417--2763462 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
2763407 AAATATATTA
**
2763417 TTTAATTAACTAACATATGTTT
1 TTTAATTAAAAAACATATGTTT
* *
2763439 TTTATTTAAAAAATATATGTTT
1 TTTAATTAAAAAACATATGTTT
2763461 TT
1 TT
2763463 ATGCCACATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTAATTAAAAAACATATGTTT
Found at i:2771525 original size:17 final size:17
Alignment explanation
Indices: 2771503--2771535 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
2771493 TAAATCTCTT
2771503 TTAA-TTAATTTTAATTC
1 TTAATTTAA-TTTAATTC
2771520 TTAATTTAATTTAATT
1 TTAATTTAATTTAATT
2771536 TAATTTTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTAATTTAATTTAATTC
Found at i:2771619 original size:20 final size:19
Alignment explanation
Indices: 2771594--2771646 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
2771584 CTTGATTCAC
* *
2771594 AATTCATAAGTATGTTAGAA
1 AATTCATAAATATATTA-AA
2771614 AATTCATAAATATATTAAA
1 AATTCATAAATATATTAAA
2771633 AATATACATAAATA
1 AAT-T-CATAAATA
2771647 ACGGTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 5 0.17
20 16 0.55
21 8 0.28
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.34
Consensus pattern (19 bp):
AATTCATAAATATATTAAA
Found at i:2777268 original size:19 final size:20
Alignment explanation
Indices: 2777236--2777273 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
2777226 ATAAGTTTGC
*
2777236 TTTCTATCATTAAC-TTTTT
1 TTTCTATCAATAACATTTTT
*
2777255 TTTCTTTCAATAACATTTT
1 TTTCTATCAATAACATTTT
2777274 AAGAAATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTCTATCAATAACATTTTT
Found at i:2779074 original size:20 final size:21
Alignment explanation
Indices: 2779051--2779092 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
2779041 TATATTTACA
*
2779051 TTAAAAATAAT-ATTTTATAT
1 TTAAAAATAATAATATTATAT
2779071 TTAAAAATAATAATATTATAT
1 TTAAAAATAATAATATTATAT
2779092 T
1 T
2779093 AATTTCGAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAAAAATAATAATATTATAT
Found at i:2779086 original size:23 final size:25
Alignment explanation
Indices: 2779034--2779091 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 25
2779024 TTATTTATAT
2779034 ATATTTATATATTTACATTAAAAATA
1 ATATTTATATATTTACA-TAAAAATA
2779060 ATATTT-TATATTTA-A-AAATAATA
1 ATATTTATATATTTACATAAA-AATA
2779083 ATA-TTATAT
1 ATATTTATAT
2779092 TAATTTCGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 5 0.17
23 10 0.33
24 1 0.03
25 8 0.27
26 6 0.20
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
ATATTTATATATTTACATAAAAATA
Found at i:2779094 original size:20 final size:19
Alignment explanation
Indices: 2779040--2779094 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
2779030 ATATATATTT
*
2779040 ATATATTTACATTAAAAATA
1 ATATA-TTATATTAAAAATA
*
2779060 ATATTTTATATTTAAAAATA
1 ATATATTATA-TTAAAAATA
2779080 ATAATATTATATTAA
1 AT-ATATTATATTAA
2779095 TTTCGAGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.13
20 19 0.63
21 7 0.23
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATATTATATTAAAAATA
Found at i:2787882 original size:2 final size:2
Alignment explanation
Indices: 2787875--2787908 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2787865 AAAGAGGATA
2787875 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2787909 TTATCGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2793753 original size:18 final size:18
Alignment explanation
Indices: 2793730--2793764 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2793720 CTTCTTATTT
* *
2793730 AATTTTTTTTTTTTTTGC
1 AATTTTATTATTTTTTGC
2793748 AATTTTATTATTTTTTG
1 AATTTTATTATTTTTTG
2793765 GTACATGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (18 bp):
AATTTTATTATTTTTTGC
Found at i:2796558 original size:14 final size:14
Alignment explanation
Indices: 2796526--2796563 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
2796516 GTTTGCAAGC
2796526 ATTAT-TATTCTAT
1 ATTATATATTCTAT
2796539 ATTTATATATTCTAT
1 A-TTATATATTCTAT
2796554 ATTATATATT
1 ATTATATATT
2796564 TCATCTATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.04
14 13 0.57
15 9 0.39
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (14 bp):
ATTATATATTCTAT
Found at i:2798299 original size:51 final size:49
Alignment explanation
Indices: 2798210--2798309 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 49
2798200 TGAGTTTTTT
* **
2798210 TGTGATTAGCGTTCTGTATTGCAATTTGCGTTACGAGAGCACGCGGACATC
1 TGTGATTAACGTTCTGTATTGCAATTTGCACTACGAGAG--CGCGGACATC
* **
2798261 TGTGATTAACGTTTTGTATTGCAATTTGCACTGTGAGAGCGCGGACATC
1 TGTGATTAACGTTCTGTATTGCAATTTGCACTACGAGAGCGCGGACATC
2798310 GCTGCTTCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 10 0.23
51 33 0.77
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (49 bp):
TGTGATTAACGTTCTGTATTGCAATTTGCACTACGAGAGCGCGGACATC
Found at i:2798373 original size:57 final size:58
Alignment explanation
Indices: 2798309--2798418 Score: 177
Period size: 58 Copynumber: 1.9 Consensus size: 58
2798299 GCGCGGACAT
* *
2798309 CGCTGCTTCGTAAAGG-TTTTTTCCCACCAATCGCGGACTGTTGTAGAAATTGGTTTC
1 CGCTGCTTCGTAAAGGTTTTTTTCCAACCAATCGCGGACTGTTGTACAAATTGGTTTC
**
2798366 CGCTGCTTCGTAAAGGTTTTTTTCCAACCAATCGTTGACTGTTGTACAAATTG
1 CGCTGCTTCGTAAAGGTTTTTTTCCAACCAATCGCGGACTGTTGTACAAATTG
2798419 AAATTGGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
57 16 0.33
58 32 0.67
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (58 bp):
CGCTGCTTCGTAAAGGTTTTTTTCCAACCAATCGCGGACTGTTGTACAAATTGGTTTC
Found at i:2806579 original size:2 final size:2
Alignment explanation
Indices: 2806542--2806567 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2806532 TCTGTGGGTC
2806542 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2806568 TTAAACATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2811466 original size:11 final size:11
Alignment explanation
Indices: 2811450--2811480 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
2811440 GATGAGTTAT
2811450 TGTGGATATTA
1 TGTGGATATTA
2811461 TGTGGATATTA
1 TGTGGATATTA
2811472 TGTGGATAT
1 TGTGGATAT
2811481 GTGGTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (11 bp):
TGTGGATATTA
Done.