Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 16 of 121
Found at i:2813378 original size:20 final size:20
Alignment explanation
Indices: 2813353--2813392 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
2813343 ATTTTATTAT
*
2813353 TTTTATGTTTTGTAATTTAA
1 TTTTATGTGTTGTAATTTAA
2813373 TTTTATGTGTTGTAATTTAA
1 TTTTATGTGTTGTAATTTAA
2813393 GAGATGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (20 bp):
TTTTATGTGTTGTAATTTAA
Found at i:2821834 original size:145 final size:144
Alignment explanation
Indices: 2821609--2821899 Score: 451
Period size: 145 Copynumber: 2.0 Consensus size: 144
2821599 ACTGGTCAGA
2821609 AAAATAATGAAGAATTGGGAACGGGTGAGTTGTTCTTGAGTCATCATGGAGCTGGTAAGAGAATG
1 AAAATAATGAAGAATTGGGAACGGGTGAGTTGTTCTTGAGTCATCAT-G-GCTGGTAAGAGAATG
* * *
2821674 TCACACAAAATTTACCAACATAATATAGAACTCA-AAAAATTTTCATGCAAGCTTTTGTCCAAAT
64 TCACACAAAATTTACCAACACAATATAGAACTCAGAAAAA-TTTCATGCAAGATTTTGCCCAAAT
*
2821738 TTCAGGGGGAATAGAAT
128 TTCAGGGGGAAAAGAAT
* *
2821755 AAAATAATGAAGAATTGGGAATGGGTGAGTTGTTCTTTTGAGTCATCAT-GCTGGTAAGGGAATG
1 AAAATAATGAAGAATTGGGAACGGGTGAGTTGTTC--TTGAGTCATCATGGCTGGTAAGAGAATG
* *
2821819 TCACACAAAATTTACCAACACAATATATAACTTAGAAAAATTTCATGCAAGATTTTGCCCAAATT
64 TCACACAAAATTTACCAACACAATATAGAACTCAGAAAAATTTCATGCAAGATTTTGCCCAAATT
2821884 TCAGGGGGAAAAGAAT
129 TCAGGGGGAAAAGAAT
2821900 GAGTCCAGTC
Statistics
Matches: 134, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
145 83 0.62
146 39 0.29
148 12 0.09
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (144 bp):
AAAATAATGAAGAATTGGGAACGGGTGAGTTGTTCTTGAGTCATCATGGCTGGTAAGAGAATGTC
ACACAAAATTTACCAACACAATATAGAACTCAGAAAAATTTCATGCAAGATTTTGCCCAAATTTC
AGGGGGAAAAGAAT
Found at i:2833389 original size:19 final size:19
Alignment explanation
Indices: 2833328--2833392 Score: 55
Period size: 19 Copynumber: 3.3 Consensus size: 19
2833318 TTGAATAATC
*
2833328 AATTAATACATTAAAATCA-
1 AATTAATAAATTAAAAT-AT
2833347 AATT-ATAATAATATAAGAAT-T
1 AATTAAT-A-AAT-TAA-AATAT
2833368 AATTAATAAATTAAAATAT
1 AATTAATAAATTAAAATAT
2833387 AATTAA
1 AATTAA
2833393 ATAACCAAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
18 5 0.13
19 15 0.39
20 5 0.13
21 8 0.21
22 5 0.13
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (19 bp):
AATTAATAAATTAAAATAT
Found at i:2834119 original size:42 final size:42
Alignment explanation
Indices: 2834051--2834130 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
2834041 TCATTTTTTA
* *
2834051 AATGAGGTTACTTTTGTTGTTCTTTTGGCTCAATTAGCTCTC
1 AATGAAGTTACTTTTATTGTTCTTTTGGCTCAATTAGCTCTC
* * *
2834093 AATGAAGTTATTTTTATTGTTTTTTTGGCTCTATTAGC
1 AATGAAGTTACTTTTATTGTTCTTTTGGCTCAATTAGC
2834131 AATCAACTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.19, C:0.12, G:0.17, T:0.51
Consensus pattern (42 bp):
AATGAAGTTACTTTTATTGTTCTTTTGGCTCAATTAGCTCTC
Found at i:2840450 original size:16 final size:16
Alignment explanation
Indices: 2840429--2840460 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2840419 CAAAAATGTG
*
2840429 AAAATATTTTTTTATA
1 AAAATATTTTTATATA
2840445 AAAATATTTTTATATA
1 AAAATATTTTTATATA
2840461 TGCATACGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AAAATATTTTTATATA
Found at i:2841907 original size:122 final size:123
Alignment explanation
Indices: 2841686--2841924 Score: 304
Period size: 122 Copynumber: 2.0 Consensus size: 123
2841676 TTCGGATCAG
* *
2841686 ATTCAAATTAGATTTTTAAAATTTATAATATTATATAATATTACAAAAAATAAAATGAAATCAAA
1 ATTCAAATTAGAATTTTAAAATTTATAATATTATATAATATTACAAAAAATAAAATCAAATCAAA
* * **
2841751 TCTAATCTAAATCGTTATTACTCTTATTAATGACTTACGCATAAGTATCTATATTTAA
66 TCAAATCTAAACCGTTATTACTCTTACCAATGACTTACGCATAAGTATCTATATTTAA
* ** *
2841809 ATTCAAATTA-AATTTTAAAATTTTTTAATATTATATAATATTA-AAAAAATTGAATCAAATCCA
1 ATTCAAATTAGAATTTTAAAA-TTTATAATATTATATAATATTACAAAAAATAAAATCAAATCAA
* * * * *
2841872 ATCAAATTTTAACCGTTATTACT-TCTACCATTGACTTATGCATAAGTGTCTAT
65 ATCAAATCTAAACCGTTATTACTCT-TACCAATGACTTACGCATAAGTATCTAT
2841925 GTTTGGTGAG
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
121 1 0.01
122 67 0.68
123 31 0.31
ACGTcount: A:0.44, C:0.11, G:0.05, T:0.41
Consensus pattern (123 bp):
ATTCAAATTAGAATTTTAAAATTTATAATATTATATAATATTACAAAAAATAAAATCAAATCAAA
TCAAATCTAAACCGTTATTACTCTTACCAATGACTTACGCATAAGTATCTATATTTAA
Found at i:2844841 original size:2 final size:2
Alignment explanation
Indices: 2844834--2844869 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
2844824 CTAAGGCAAT
*
2844834 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2844870 TTATTTGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:2845126 original size:19 final size:20
Alignment explanation
Indices: 2845102--2845141 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
2845092 CATCATTAAT
*
2845102 AAATAAATAT-CAATAATTA
1 AAATAAATATACAAAAATTA
2845121 AAATAAATATACAAAAATTA
1 AAATAAATATACAAAAATTA
2845141 A
1 A
2845142 CTTAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (20 bp):
AAATAAATATACAAAAATTA
Found at i:2851934 original size:22 final size:22
Alignment explanation
Indices: 2851893--2851939 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
2851883 TAGTGAGATC
**
2851893 AAATCAGAGTGAAATTGCATGA
1 AAATCAGAGTGAAACAGCATGA
* *
2851915 AAATCATAGTGAAACAGCATTA
1 AAATCAGAGTGAAACAGCATGA
2851937 AAA
1 AAA
2851940 AAAGAATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.21
Consensus pattern (22 bp):
AAATCAGAGTGAAACAGCATGA
Found at i:2853681 original size:26 final size:25
Alignment explanation
Indices: 2853610--2853723 Score: 79
Period size: 24 Copynumber: 4.4 Consensus size: 25
2853600 AATAATATAT
*
2853610 ATAAAATA-AATTATTTATTTATTA
1 ATAAAATATTATTATTTATTTATTA
2853634 ATAAAATATTATCATCAAATTTATTTTATTA
1 ATAAAATATTAT--T---ATTTA-TTTATTA
* *
2853665 ATAAATTATTATTATTTAATTCATTA
1 ATAAAATATTATTATTT-ATTTATTA
* ** *
2853691 ATAATATA-TAAAATTTATATATTA
1 ATAAAATATTATTATTTATTTATTA
*
2853715 ATAATATAT
1 ATAAAATAT
2853724 CAAATATAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
24 22 0.31
25 8 0.11
26 16 0.22
27 2 0.03
29 1 0.01
30 5 0.07
31 18 0.25
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (25 bp):
ATAAAATATTATTATTTATTTATTA
Found at i:2855117 original size:36 final size:36
Alignment explanation
Indices: 2855070--2855142 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
2855060 GAGTTTAAGC
2855070 TTAATTACCGTGC-AACTTTAAGCA-AAAATCTACCAT
1 TTAATTACCGTGCAAAC-TTAAGCAGAAAA-CTACCAT
*
2855106 TTAATTACCGTGCAAACTTAGGCAGAAAACTACCAT
1 TTAATTACCGTGCAAACTTAAGCAGAAAACTACCAT
2855142 T
1 T
2855143 CGTAGACCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
36 27 0.79
37 7 0.21
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (36 bp):
TTAATTACCGTGCAAACTTAAGCAGAAAACTACCAT
Found at i:2858996 original size:17 final size:17
Alignment explanation
Indices: 2858934--2858997 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
2858924 ACATAAAATA
2858934 AAATTATTTATTTATTAAT
1 AAATTA-TTA-TTATTAAT
* *
2858953 AAAATATTATCATT-A-
1 AAATTATTATTATTAAT
* *
2858968 AATTTA-TCTTATTAAT
1 AAATTATTATTATTAAT
2858984 AAATTATTATTATT
1 AAATTATTATTATT
2858998 TGATTCATTA
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
14 5 0.15
15 5 0.15
16 6 0.18
17 10 0.29
18 3 0.09
19 5 0.15
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
AAATTATTATTATTAAT
Found at i:2864249 original size:18 final size:18
Alignment explanation
Indices: 2864226--2864260 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
2864216 ACCTCTTTTG
2864226 TCTTTATTAGAATGATAT
1 TCTTTATTAGAATGATAT
2864244 TCTTTATTAGAATGATA
1 TCTTTATTAGAATGATA
2864261 ATTTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (18 bp):
TCTTTATTAGAATGATAT
Found at i:2867453 original size:20 final size:20
Alignment explanation
Indices: 2867430--2867469 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2867420 TAAATTTAAG
*
2867430 AAAATTTATATAAA-AAATTT
1 AAAATTAAT-TAAATAAATTT
2867450 AAAATTAATTAAATAAATTT
1 AAAATTAATTAAATAAATTT
2867470 TAATTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAATTAATTAAATAAATTT
Found at i:2867876 original size:29 final size:28
Alignment explanation
Indices: 2867839--2867901 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
2867829 TTTTAAATAA
**
2867839 AAATATTAACAAAATTTTTATTATTAAAT
1 AAATATTAACAAAATTTAAATTA-TAAAT
**
2867868 AAATATTAATTAAATTTAAATTATAAAT
1 AAATATTAACAAAATTTAAATTATAAAT
2867896 -AATATT
1 AAATATT
2867902 TTTATTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 6 0.20
28 5 0.17
29 19 0.63
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATATTAACAAAATTTAAATTATAAAT
Found at i:2868455 original size:63 final size:62
Alignment explanation
Indices: 2868359--2868665 Score: 234
Period size: 63 Copynumber: 4.9 Consensus size: 62
2868349 AGTCATACAA
* * * * *
2868359 AAAATTTATTGAATGAATTATTAAAGATTTTTTTAGTTAAAAATACATTCAAT-ATTCTCTTTC
1 AAAATTTTTTGTATAAATTATTAAA-ATATTTTTAGATAAAAATACATTCAATAATT-TCTTTC
* *
2868422 AAAATTTTTTGTATAAATTATTGAAAATATTTTTA-ACAAAAA-ACATCTTCAATAATTTCTCTC
1 AAAATTTTTTGTATAAATTATT-AAAATATTTTTAGATAAAAATACA--TTCAATAATTTCTTTC
* * ** * * *
2868485 AAAAATTTTTATATAAATTATTAAAAGTATTTTT-GAATAAAAATATTTTTAATAATTT-ATAC
1 AAAATTTTTTGTATAAATTATTAAAA-TATTTTTAG-ATAAAAATACATTCAATAATTTCTTTC
* * * * *
2868547 AAAAATTTTATTG-A-AAGGATTATTGAAGATATTTTTGGATCAAAATATC-TTTAATAATTTTT
1 -AAAATTTT-TTGTATAA--ATTATT-AAAATATTTTTAGATAAAAATA-CATTCAATAATTTCT
2868609 TTC
60 TTC
* * *
2868612 AAAATTTTTTGTATAAATTATTAAAAATATTTTTAAATAAAAATAAATTAAATA
1 AAAATTTTTTGTATAAATTATT-AAAATATTTTTAGATAAAAATACATTCAATA
2868666 TAAACAAACA
Statistics
Matches: 195, Mismatches: 30, Indels: 38
0.74 0.11 0.14
Matches are distributed among these distances:
61 3 0.02
62 12 0.06
63 116 0.59
64 55 0.28
65 9 0.05
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (62 bp):
AAAATTTTTTGTATAAATTATTAAAATATTTTTAGATAAAAATACATTCAATAATTTCTTTC
Found at i:2868538 original size:15 final size:16
Alignment explanation
Indices: 2868506--2868539 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
2868496 TATAAATTAT
*
2868506 TAAAAGTATTTTTGAA
1 TAAAAATATTTTTGAA
2868522 TAAAAATATTTTT-AA
1 TAAAAATATTTTTGAA
2868537 TAA
1 TAA
2868540 TTTATACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TAAAAATATTTTTGAA
Found at i:2877684 original size:18 final size:19
Alignment explanation
Indices: 2877647--2877685 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
2877637 CCACAAAACT
2877647 AGAAATAATTTTTGTTTAA
1 AGAAATAATTTTTGTTTAA
2877666 AGAAA-AATATTTT-TTTAA
1 AGAAATAAT-TTTTGTTTAA
2877684 AG
1 AG
2877686 TCATATTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (19 bp):
AGAAATAATTTTTGTTTAA
Found at i:2879518 original size:19 final size:19
Alignment explanation
Indices: 2879490--2879526 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
2879480 TCCGTTGAGC
2879490 CATCGCCATCG-TTGTCGT
1 CATCGCCATCGCTTGTCGT
2879508 CATCGGCCATCGCTTGTCG
1 CATC-GCCATCGCTTGTCG
2879527 GCGCAGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.11, C:0.35, G:0.24, T:0.30
Consensus pattern (19 bp):
CATCGCCATCGCTTGTCGT
Found at i:2879879 original size:55 final size:55
Alignment explanation
Indices: 2879767--2879892 Score: 123
Period size: 55 Copynumber: 2.3 Consensus size: 55
2879757 CGACTATCAT
* *** *
2879767 AATTAAATATTTAAAATAATTTTTATATGACATTAAATTAATTATCGTAATTAAAA
1 AATTAAATAATTAAAATAATTTTTATATGA-ATTAAATTAATTAAAATAAATAAAA
* *
2879823 AATTAAA-AATTAAAATAATTTTTATATG-TTTATATTAAATTAAAATAAATATAAA
1 AATTAAATAATTAAAATAATTTTTATATGAATTAAATT-AATTAAAATAAATA-AAA
*
2879878 AAATAAACT-ATTAAA
1 AATTAAA-TAATTAAA
2879893 TATGTTAAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
53 6 0.10
54 10 0.17
55 29 0.50
56 13 0.22
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (55 bp):
AATTAAATAATTAAAATAATTTTTATATGAATTAAATTAATTAAAATAAATAAAA
Found at i:2880036 original size:29 final size:29
Alignment explanation
Indices: 2880004--2880074 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
2879994 ATAAGATATG
**
2880004 AATAAAAATAAATTTTAAAAAATAATT-AA
1 AATAAAAATAAAAATT-AAAAATAATTAAA
*
2880033 AAT-AAAATAAAAAATTAAAAGTAATTAAA
1 AATAAAAAT-AAAAATTAAAAATAATTAAA
2880062 AATAAAAATAAAA
1 AATAAAAATAAAA
2880075 CTCCATCTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 14 0.39
29 17 0.47
30 5 0.14
ACGTcount: A:0.73, C:0.00, G:0.01, T:0.25
Consensus pattern (29 bp):
AATAAAAATAAAAATTAAAAATAATTAAA
Found at i:2880048 original size:18 final size:18
Alignment explanation
Indices: 2880022--2880074 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 18
2880012 TAAATTTTAA
2880022 AAAATAATTAAAATAAAAT
1 AAAA-AATTAAAATAAAAT
2880041 AAAAAATTAAAAGT--AAT
1 AAAAAATTAAAA-TAAAAT
* *
2880058 TAAAAATAAAAATAAAA
1 AAAAAATTAAAATAAAA
2880075 CTCCATCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
16 1 0.03
17 13 0.45
18 10 0.34
19 5 0.17
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (18 bp):
AAAAAATTAAAATAAAAT
Found at i:2881063 original size:23 final size:24
Alignment explanation
Indices: 2881020--2881073 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
2881010 TTTTTTATTA
2881020 ATTTTTTTAATCACAATTATAAAT
1 ATTTTTTTAATCACAATTATAAAT
*
2881044 ATTTTTTTAATCATAA-TATAAAT
1 ATTTTTTTAATCACAATTATAAAT
*
2881067 AATTTTT
1 ATTTTTT
2881074 ATTACTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 13 0.46
24 15 0.54
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTTTTTTAATCACAATTATAAAT
Found at i:2890816 original size:31 final size:31
Alignment explanation
Indices: 2890778--2890843 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
2890768 TAACTCTTGT
2890778 GATTGCCTGCAATCATCCCAGTCTGTGTTTA
1 GATTGCCTGCAATCATCCCAGTCTGTGTTTA
*
2890809 GATTGCCTGCAATCATCTCAGTCTGTGTTTA
1 GATTGCCTGCAATCATCCCAGTCTGTGTTTA
2890840 GATT
1 GATT
2890844 TTGTGTACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (31 bp):
GATTGCCTGCAATCATCCCAGTCTGTGTTTA
Found at i:2898345 original size:10 final size:10
Alignment explanation
Indices: 2898330--2898359 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
2898320 ATCTAATTTT
2898330 TATATTTTAA
1 TATATTTTAA
2898340 TATATTTTAA
1 TATATTTTAA
2898350 T-TATTTTAA
1 TATATTTTAA
2898359 T
1 T
2898360 TAATAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTTAA
Found at i:2898356 original size:9 final size:9
Alignment explanation
Indices: 2898332--2898361 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
2898322 CTAATTTTTA
2898332 TATTTTAAT
1 TATTTTAAT
2898341 ATATTTTAAT
1 -TATTTTAAT
2898351 TATTTTAAT
1 TATTTTAAT
2898360 TA
1 TA
2898362 ATAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTAAT
Found at i:2901570 original size:19 final size:19
Alignment explanation
Indices: 2901548--2901593 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
2901538 AATTATATTT
2901548 TTAATAATAATAT-TTAATA
1 TTAA-AATAATATGTTAATA
*
2901567 TTAAAATATTATGTTAATA
1 TTAAAATAATATGTTAATA
*
2901586 TAAAAATA
1 TTAAAATA
2901594 CTTAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TTAAAATAATATGTTAATA
Found at i:2901640 original size:15 final size:15
Alignment explanation
Indices: 2901622--2901842 Score: 138
Period size: 15 Copynumber: 14.6 Consensus size: 15
2901612 TATTATTCTT
2901622 TATATTATTTATTAATA
1 TATATTATTTATT-A-A
*
2901639 TAATATTATTTATTAC
1 T-ATATTATTTATTAA
* * *
2901655 TAT-TAATATATTAG
1 TATATTATTTATTAA
*
2901669 TATA-TATTTATTTA
1 TATATTATTTATTAA
2901683 TA-ATATATTTATTAA
1 TATAT-TATTTATTAA
*
2901698 TATAATATTTATTAA
1 TATATTATTTATTAA
*
2901713 TATAATATTT-TT-A
1 TATATTATTTATTAA
*
2901726 T-TA--ATATATTAA
1 TATATTATTTATTAA
2901738 TATATTATTTATTAA
1 TATATTATTTATTAA
* *
2901753 TATATTATATTAATAG
1 TATATTAT-TTATTAA
2901769 TATATTATTTA-TACA
1 TATATTATTTATTA-A
*
2901784 TATAATATTGCTTATTAA
1 TATATTA-T--TTATTAA
* *
2901802 TATATT-GTAATATAA
1 TATATTATTTAT-TAA
2901817 TATGATTTATTTATTAA
1 TAT-A-TTATTTATTAA
*
2901834 TATAATATT
1 TATATTATT
2901843 ATTTATAAGT
Statistics
Matches: 162, Mismatches: 22, Indels: 42
0.72 0.10 0.19
Matches are distributed among these distances:
10 3 0.02
11 2 0.01
12 4 0.02
13 5 0.03
14 26 0.16
15 68 0.42
16 18 0.11
17 10 0.06
18 24 0.15
19 2 0.01
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (15 bp):
TATATTATTTATTAA
Found at i:2901672 original size:8 final size:8
Alignment explanation
Indices: 2901622--2901759 Score: 70
Period size: 8 Copynumber: 16.9 Consensus size: 8
2901612 TATTATTCTT
2901622 TATATT-A
1 TATATTAA
*
2901629 TTTATTAA
1 TATATTAA
* *
2901637 TATAATAT
1 TATATTAA
*
2901645 TAT-TTAT
1 TATATTAA
2901652 TACTATTAA
1 TA-TATTAA
2901661 TATATTAGTA
1 TATATTA--A
*
2901671 TATATTTA
1 TATATTAA
*
2901679 TTTA-TAA
1 TATATTAA
*
2901686 TATATTTA
1 TATATTAA
2901694 T-TAATATAA
1 TAT-AT-TAA
2901703 TATTTATTAA
1 TA--TATTAA
* *
2901713 TATAATATT
1 TATATTA-A
*
2901722 TTTATTAA
1 TATATTAA
2901730 TATATTAA
1 TATATTAA
2901738 TATATT-A
1 TATATTAA
*
2901745 TTTATTAA
1 TATATTAA
2901753 TATATTA
1 TATATTA
2901760 TATTAATAGT
Statistics
Matches: 98, Mismatches: 20, Indels: 25
0.69 0.14 0.17
Matches are distributed among these distances:
7 22 0.22
8 48 0.49
9 13 0.13
10 12 0.12
11 2 0.02
12 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.57
Consensus pattern (8 bp):
TATATTAA
Found at i:2901840 original size:101 final size:97
Alignment explanation
Indices: 2901622--2901848 Score: 252
Period size: 99 Copynumber: 2.3 Consensus size: 97
2901612 TATTATTCTT
* *
2901622 TATA-TTATTTATTAATATAATATTATTTATTACTATTAATATATTAGTATATATTTATTTATAA
1 TATATTTATTTATTAATATAATATTATTTATTAATATTAATATATTAATATATATTTATTTATAA
*
2901686 TATATTTATTAATATAATATTTATTAATATAA
66 TATATTTATTAATATAATATTTAGTAATATAA
* * * *
2901718 TATTTTTATTAATATATTA-ATATATTATTTATTAATA-TATTATATTAATAGTATA-TTATTTA
1 TATATTTATTTAT-TAATATA-ATATTATTTATTAATATTAATATATTAATA-TATATTTATTTA
*
2901780 TACATATAATATTGCTT-AT-TAATATATT-GTAATATAA
63 TA-ATAT-AT-TT-ATTAATATAATAT-TTAGTAATATAA
2901817 TATGATTTATTTATTAATATAATATTATTTAT
1 TAT-ATTTATTTATTAATATAATATTATTTAT
2901849 AAGTAAATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
96 3 0.03
97 28 0.26
98 27 0.25
99 34 0.31
100 15 0.14
101 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (97 bp):
TATATTTATTTATTAATATAATATTATTTATTAATATTAATATATTAATATATATTTATTTATAA
TATATTTATTAATATAATATTTAGTAATATAA
Found at i:2901845 original size:46 final size:45
Alignment explanation
Indices: 2901670--2901845 Score: 105
Period size: 50 Copynumber: 3.7 Consensus size: 45
2901660 ATATATTAGT
* *
2901670 ATAT-ATTTATTTA-TAATATATTTATTAATATAATATTTATTAATATA
1 ATATGATTTATTTATTAATATA-ATATT-AT-TAATATAT-TTAATATA
* *
2901717 ATAT-TTTTATTAATATATTAATATATTATTTATTAATATA-TT-ATATTA
1 ATATGATTTA-T--T-TATTAATATAATA-TTATTAATATATTTAATA-TA
2901765 ATA-GTATATTATTTA-TACATATAATATTGCTTATTAATATATTGTAATATA
1 ATATG-AT-TTATTTATTA-ATATAATA----TTATTAATATATT-TAATATA
2901816 ATATGATTTATTTATTAATATAATATTATT
1 ATATGATTTATTTATTAATATAATATTATT
2901846 TATAAGTAAA
Statistics
Matches: 105, Mismatches: 5, Indels: 39
0.70 0.03 0.26
Matches are distributed among these distances:
45 2 0.02
46 14 0.13
47 12 0.11
48 8 0.08
49 13 0.12
50 26 0.25
51 17 0.16
52 13 0.12
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (45 bp):
ATATGATTTATTTATTAATATAATATTATTAATATATTTAATATA
Found at i:2905988 original size:10 final size:10
Alignment explanation
Indices: 2905973--2905998 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
2905963 CATAACAGAT
2905973 TCTCAAAATA
1 TCTCAAAATA
2905983 TCTCAAAATA
1 TCTCAAAATA
2905993 TCTCAA
1 TCTCAA
2905999 TATAAGATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (10 bp):
TCTCAAAATA
Found at i:2909145 original size:3 final size:3
Alignment explanation
Indices: 2909137--2909164 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2909127 CATTAGCAAA
2909137 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
2909165 CTAGCGAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:2915161 original size:146 final size:148
Alignment explanation
Indices: 2914953--2915275 Score: 404
Period size: 146 Copynumber: 2.2 Consensus size: 148
2914943 GTAAAATTAG
*
2914953 GGTGAAGAGATTTTTTTTTTCAAAAATATGAACAATTTAAACCTTCCTGAATAACTTGCTTTGAT
1 GGTGAAGAGATTTTTTTTTTCAAAAATATGAACAATTTAAACCTGCCTGAATAACTTGCTTTGAT
* ** * * * * *
2915018 GGGTTTTGGTCTAGA-GGATGGAATATGTAACAAAAG-CTTAGAAATTTATGGTGTGGTTTTGTG
66 GGGTATTGGT-TAGAGGGATGGAATACATAACAAAAGAC-TAGAAATTTAAGATGGGGTCTTCTG
* *
2915081 TAAAATTTCAGGCTCCAAAC
129 TAAAATTACAGACTCCAAAC
* **
2915101 GGTGAAGCG-TTTTTTTTTTTTAAAATATGAACAA-TTAAACCTGCCTGAATAACTTGCTTTGAT
1 GGTGAAGAGATTTTTTTTTTCAAAAATATGAACAATTTAAACCTGCCTGAATAACTTGCTTTGAT
*
2915164 GGGTATTGGTTAGAGGGATGGAATACATAACACAAGACTAGAAATTTAAGATGGGGTCTTCTGTA
66 GGGTATTGGTTAGAGGGATGGAATACATAACAAAAGACTAGAAATTTAAGATGGGGTCTTCTGTA
*
2915229 AAATTACAGACTCC-AAT
131 AAATTACAGACTCCAAAC
*
2915246 GGATGAAGAGCTTTTTCTCTTCTTCAAAAA
1 GG-TGAAGAGATTTTT-T-TT-TTCAAAAA
2915276 ATAAATAATT
Statistics
Matches: 149, Mismatches: 19, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
145 8 0.05
146 95 0.64
147 29 0.19
148 9 0.06
149 2 0.01
150 6 0.04
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (148 bp):
GGTGAAGAGATTTTTTTTTTCAAAAATATGAACAATTTAAACCTGCCTGAATAACTTGCTTTGAT
GGGTATTGGTTAGAGGGATGGAATACATAACAAAAGACTAGAAATTTAAGATGGGGTCTTCTGTA
AAATTACAGACTCCAAAC
Found at i:2919970 original size:6 final size:6
Alignment explanation
Indices: 2919960--2919989 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
2919950 CTGCTTCTTT
*
2919960 CATAGT CATAGC CATAGC CATAGC CATAGC
1 CATAGC CATAGC CATAGC CATAGC CATAGC
2919990 TAAAGTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (6 bp):
CATAGC
Found at i:2924307 original size:72 final size:72
Alignment explanation
Indices: 2924190--2924334 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
2924180 GATGGATCAT
2924190 GCTTATGAATGAAATAAGAAAGTGATTTTTGTTTAAAGAATGATTTATGATAGCTATATTTTTAC
1 GCTTATGAATGAAATAAGAAAGTGATTTTTGTTTAAAGAATGATTTATGATAGCTATATTTTTAC
2924255 ATCCCTA
66 ATCCCTA
* *
2924262 GCTTATGAATGAAATGAGAAAGTGATTTTTGTTTAAAGAATGATTTATGATAGCTATGTTTTTAC
1 GCTTATGAATGAAATAAGAAAGTGATTTTTGTTTAAAGAATGATTTATGATAGCTATATTTTTAC
2924327 ATCCCTA
66 ATCCCTA
2924334 G
1 G
2924335 AAAATGGGAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.40
Consensus pattern (72 bp):
GCTTATGAATGAAATAAGAAAGTGATTTTTGTTTAAAGAATGATTTATGATAGCTATATTTTTAC
ATCCCTA
Found at i:2926592 original size:11 final size:12
Alignment explanation
Indices: 2926576--2926604 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
2926566 CATAACATAT
2926576 AATAAATAAT-A
1 AATAAATAATAA
2926587 AATAAATAATAA
1 AATAAATAATAA
2926599 AATAAA
1 AATAAA
2926605 AAATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAAATAATAA
Found at i:2927322 original size:55 final size:56
Alignment explanation
Indices: 2927232--2927341 Score: 177
Period size: 55 Copynumber: 2.0 Consensus size: 56
2927222 TAGCGATCAC
*
2927232 TATGACTTCAGTCAAGCCCCTTTCTTCACTTCACTTGTCTTTTGGTGGATAATTGA
1 TATGACTTCAGTCAAGCCCCATTCTTCACTTCACTTGTCTTTTGGTGGATAATTGA
* * *
2927288 TATGATTTCAGTCAAG-TCCATTCTTCACTTCACTTGTCTTTTGGTGGATGATTG
1 TATGACTTCAGTCAAGCCCCATTCTTCACTTCACTTGTCTTTTGGTGGATAATTG
2927342 GTCCTCAACC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
55 35 0.70
56 15 0.30
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (56 bp):
TATGACTTCAGTCAAGCCCCATTCTTCACTTCACTTGTCTTTTGGTGGATAATTGA
Found at i:2934814 original size:72 final size:71
Alignment explanation
Indices: 2934588--2934815 Score: 276
Period size: 72 Copynumber: 3.2 Consensus size: 71
2934578 CATCTCCTGC
* * * * * *
2934588 ACAACTTTCTATAATTAAAACATTTTCTTCTTTGTCTTTGCCAGCTTCGCTTATACCAGATTCAC
1 ACAACTTTCTGTAATTAAAACTTTTTCTTCTTTGT-TTTGTCAGCTTCACTTACACCGGATTCAC
2934653 CTTCAAT
65 CTTCAAT
* * * * * **
2934660 ACAACTTTCAGTAATTAAAACTTTTTGTCCTTTATTTTTGTCAGCTTCACGTACATTGGATTCAC
1 ACAACTTTCTGTAATTAAAACTTTTTCTTCTTT-GTTTTGTCAGCTTCACTTACACCGGATTCAC
*
2934725 CTTCAAC
65 CTTCAAT
* * *
2934732 ACATCTTTCTGTAGTTAGAACTTTTTCTTCTTTGTTTCTGTCAGCTTCACTTACACCGGATTCAC
1 ACAACTTTCTGTAATTAAAACTTTTTCTTCTTTGTTT-TGTCAGCTTCACTTACACCGGATTCAC
2934797 CTTCAAT
65 CTTCAAT
2934804 ACAACTTTCTGT
1 ACAACTTTCTGT
2934816 TATCACAATA
Statistics
Matches: 128, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
71 3 0.02
72 124 0.97
73 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.43
Consensus pattern (71 bp):
ACAACTTTCTGTAATTAAAACTTTTTCTTCTTTGTTTTGTCAGCTTCACTTACACCGGATTCACC
TTCAAT
Found at i:2935843 original size:5 final size:5
Alignment explanation
Indices: 2935833--2935864 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
2935823 GCGAGTTTTC
2935833 TTATT TTA-T TT-TT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
2935865 AAAGCAGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 6 0.24
5 19 0.76
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:2935849 original size:13 final size:13
Alignment explanation
Indices: 2935828--2935857 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2935818 ATAAAGCGAG
2935828 TTTTCTTATTTTA
1 TTTTCTTATTTTA
*
2935841 TTTTTTTATTTTA
1 TTTTCTTATTTTA
2935854 TTTT
1 TTTT
2935858 ATTTTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTCTTATTTTA
Found at i:2936873 original size:21 final size:21
Alignment explanation
Indices: 2936831--2936901 Score: 103
Period size: 22 Copynumber: 3.4 Consensus size: 21
2936821 CTCAAAATTA
2936831 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTT-AAAT
2936853 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
2936874 ATAAAATA-T-TTTTTT-AAT
1 ATAAAATATTATTTTTTAAAT
2936892 ATAAATATAT
1 ATAAA-ATAT
2936902 ATAATAAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.17
19 9 0.19
20 1 0.02
21 12 0.26
22 17 0.36
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:2936888 original size:19 final size:19
Alignment explanation
Indices: 2936840--2936901 Score: 81
Period size: 21 Copynumber: 3.2 Consensus size: 19
2936830 AATAAAATAT
*
2936840 TATTTTTTAAAATATAAAA
1 TATTTTTTTAAATATAAAA
2936859 TATTATTTTTTAAATATAAAA
1 TA-T-TTTTTTAAATATAAAA
2936880 TATTTTTTT-AATATAAATA
1 TATTTTTTTAAATATAAA-A
2936899 TAT
1 TAT
2936902 ATAATAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
18 8 0.21
19 12 0.31
20 2 0.05
21 17 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTTTTTTAAATATAAAA
Found at i:2938520 original size:13 final size:13
Alignment explanation
Indices: 2938499--2938529 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2938489 ATAAAATATG
*
2938499 AATACGATATAAA
1 AATAAGATATAAA
2938512 AATAAGATATAAA
1 AATAAGATATAAA
2938525 AATAA
1 AATAA
2938530 TAAAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (13 bp):
AATAAGATATAAA
Found at i:2941533 original size:26 final size:26
Alignment explanation
Indices: 2941504--2941555 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
2941494 GAAGATGATG
2941504 AACATGATTGTAACATGTTAATTTCC
1 AACATGATTGTAACATGTTAATTTCC
2941530 AACATGATTGTAACATGTTAATTTCC
1 AACATGATTGTAACATGTTAATTTCC
2941556 CTGAATCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (26 bp):
AACATGATTGTAACATGTTAATTTCC
Found at i:2943837 original size:12 final size:13
Alignment explanation
Indices: 2943810--2943838 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
2943800 GGTGGGAAGG
2943810 AAATTTGGGAGGA
1 AAATTTGGGAGGA
2943823 AAATTT-GGAGGA
1 AAATTTGGGAGGA
2943835 AAAT
1 AAAT
2943839 CAGTTGCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.45, C:0.00, G:0.31, T:0.24
Consensus pattern (13 bp):
AAATTTGGGAGGA
Found at i:2944414 original size:21 final size:22
Alignment explanation
Indices: 2944388--2944429 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
2944378 ATTTCGAATC
2944388 AAAATTTT-TTTTATTT-ATATT
1 AAAATTTTATTTT-TTTGATATT
2944409 AAAATTTTATTTTTTTGATAT
1 AAAATTTTATTTTTTTGATAT
2944430 AATCACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
AAAATTTTATTTTTTTGATATT
Found at i:2946047 original size:17 final size:18
Alignment explanation
Indices: 2945998--2946049 Score: 74
Period size: 17 Copynumber: 3.0 Consensus size: 18
2945988 AAAAAAATTA
2945998 ATATTATAAATAATTATT
1 ATATTATAAATAATTATT
2946016 ATATTATAAAT-ATTATT
1 ATATTATAAATAATTATT
2946033 A-ATCTA-AAATAATTATT
1 ATAT-TATAAATAATTATT
2946050 TTTTTGAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.19
17 15 0.47
18 11 0.34
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATTATAAATAATTATT
Found at i:2946190 original size:16 final size:15
Alignment explanation
Indices: 2946169--2946199 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
2946159 TATATTAAGA
2946169 AAAAAATTATTATTAT
1 AAAAAATTATT-TTAT
2946185 AAAAAATTATTTTAT
1 AAAAAATTATTTTAT
2946200 GGGAACATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAAAAATTATTTTAT
Found at i:2946750 original size:20 final size:23
Alignment explanation
Indices: 2946725--2946774 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
2946715 ATAATTCCTG
2946725 TTATATAAAA-TA-TTA-ATAAT
1 TTATATAAAATTATTTATATAAT
2946745 TTATATAAAATTATTTATTATAAT
1 TTATATAAAATTATTTA-TATAAT
2946769 TTATAT
1 TTATAT
2946775 TGATATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 10 0.38
21 2 0.08
22 3 0.12
24 11 0.42
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTATATAAAATTATTTATATAAT
Found at i:2948701 original size:24 final size:23
Alignment explanation
Indices: 2948649--2948706 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
2948639 TTTTAACATA
*
2948649 TTATTAATTT-TTATATTAAATT
1 TTATTAATTTATCATATTAAATT
2948671 TTATTAATTTATCA-ATCTAAATTT
1 TTATTAATTTATCATAT-TAAA-TT
*
2948695 TTATTAAATTAT
1 TTATTAATTTAT
2948707 TTTTAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 12 0.39
23 6 0.19
24 13 0.42
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (23 bp):
TTATTAATTTATCATATTAAATT
Found at i:2949064 original size:30 final size:30
Alignment explanation
Indices: 2949025--2949081 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
2949015 TTAATTAATT
* * *
2949025 ATATATATATTTATATAATGATATTTTTAA
1 ATATATATATTTAAAAAATAATATTTTTAA
*
2949055 ATATTTATATTTAAAAAATAATATTTT
1 ATATATATATTTAAAAAATAATATTTT
2949082 ATATTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (30 bp):
ATATATATATTTAAAAAATAATATTTTTAA
Found at i:2949128 original size:20 final size:22
Alignment explanation
Indices: 2949054--2949127 Score: 134
Period size: 22 Copynumber: 3.5 Consensus size: 22
2949044 GATATTTTTA
2949054 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
2949074 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
2949096 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
2949118 AATATTTTAT
1 AATATTTTAT
2949128 TAATTCAGAT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.08
21 6 0.12
22 42 0.81
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:2960264 original size:27 final size:27
Alignment explanation
Indices: 2960220--2960275 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
2960210 TTTTAGGAAA
* * *
2960220 GTGGCCCCTACCATATTACTATATCTT
1 GTGGCCCCTACCAAATTACCATATATT
* *
2960247 GTGGTCCCTATCAAATTACCATATATT
1 GTGGCCCCTACCAAATTACCATATATT
2960274 GT
1 GT
2960276 CAGAGTCGGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (27 bp):
GTGGCCCCTACCAAATTACCATATATT
Found at i:2960926 original size:20 final size:20
Alignment explanation
Indices: 2960898--2960935 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2960888 TGTACATAAA
2960898 ACATACATACATACATATGT
1 ACATACATACATACATATGT
*
2960918 ACATGCATACATACATAT
1 ACATACATACATACATAT
2960936 ATAAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
ACATACATACATACATATGT
Found at i:2960970 original size:2 final size:2
Alignment explanation
Indices: 2960965--2960994 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2960955 TGTATCCATG
2960965 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
2960995 TGTGCACGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:2970902 original size:29 final size:28
Alignment explanation
Indices: 2970866--2970951 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 28
2970856 TTCGATTTTT
*
2970866 AAAAATTTAATCTCTATAGTATTATTTA
1 AAAAATTTAGTCTCTATAGTATTATTTA
*
2970894 AAAAGATTTAGTCATTCTAATATTATT-TTTA
1 AAAA-ATTTAGTC--TCT-ATAGTATTATTTA
** *
2970925 GTAAATTTAGCCTCTATAGTATTATTT
1 AAAAATTTAGTCTCTATAGTATTATTT
2970952 TTTAAGGAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
27 7 0.15
28 10 0.21
29 7 0.15
30 7 0.15
31 9 0.19
32 7 0.15
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (28 bp):
AAAAATTTAGTCTCTATAGTATTATTTA
Found at i:2972195 original size:22 final size:22
Alignment explanation
Indices: 2972161--2972209 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
2972151 TTATTTTAAA
* *
2972161 ATTTTTAACATTTGAAACTTTT
1 ATTTTTAACATTTGAAAATTAT
* * *
2972183 ATTTTTTATATTTTAAAATTAT
1 ATTTTTAACATTTGAAAATTAT
2972205 ATTTT
1 ATTTT
2972210 ATGATTTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTTTTAACATTTGAAAATTAT
Found at i:2977503 original size:29 final size:29
Alignment explanation
Indices: 2977469--2977525 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
2977459 AACAAGTTCT
2977469 TTTCCAAAATGAGAAACCAAGATGTATTC
1 TTTCCAAAATGAGAAACCAAGATGTATTC
*
2977498 TTTCCAAAATGAGAAATCAAGATGTATT
1 TTTCCAAAATGAGAAACCAAGATGTATT
2977526 ATTGTGATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAAAATGAGAAACCAAGATGTATTC
Found at i:2988204 original size:22 final size:22
Alignment explanation
Indices: 2988177--2988220 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
2988167 TCTGTATTTA
*
2988177 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
2988199 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
2988221 GACAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:2988511 original size:25 final size:25
Alignment explanation
Indices: 2988483--2988542 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
2988473 ATTTTAGGCT
* *
2988483 TTCATTGCCAAACCCCGTTTAGACC
1 TTCATTGCCAAACCCCATTAAGACC
* * *
2988508 TTCATTGTCGAACCCTATTAAGACC
1 TTCATTGCCAAACCCCATTAAGACC
*
2988533 TTCATAGCCA
1 TTCATTGCCA
2988543 TTCTATTTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.30
Consensus pattern (25 bp):
TTCATTGCCAAACCCCATTAAGACC
Found at i:2992276 original size:22 final size:22
Alignment explanation
Indices: 2992249--2992292 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
2992239 TCTGTATTTA
*
2992249 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
2992271 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
2992293 GACAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:2996637 original size:42 final size:42
Alignment explanation
Indices: 2996576--2996656 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
2996566 ATGACTCCCA
* *
2996576 AGGCTCACTTTCAATATCACCATCATCGTCCTCTGTTTCCTG
1 AGGCTCACTTTCAAGATCACCATCATCATCCTCTGTTTCCTG
2996618 AGGCTCACTTTCAAGATCACCATCATCATCCTCTGTTTC
1 AGGCTCACTTTCAAGATCACCATCATCATCCTCTGTTTC
2996657 TTCAAGAACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.21, C:0.33, G:0.11, T:0.35
Consensus pattern (42 bp):
AGGCTCACTTTCAAGATCACCATCATCATCCTCTGTTTCCTG
Found at i:3004842 original size:89 final size:89
Alignment explanation
Indices: 3004684--3004932 Score: 330
Period size: 89 Copynumber: 2.9 Consensus size: 89
3004674 TCTTCTTTGA
* * * * *
3004684 CATATTGGATATAGTGTTGTTGAATATC--TTGTTTTGATCATCATTAGTTGTAATTTCTTCACT
1 CATATTGGATATAGTATTGTTGAAGATCTTTTTTTTTTATCATCATTTGTTGTAATTTCTTCACT
*
3004747 CATACTCTTGTGGTTTATATCATT
66 CTTACTCTTGTGGTTTATATCATT
3004771 CATATTGGATATAGTATTGTTGAAGATCTTTTTTTTTTATCATCATTTGTTGTAATTTCTTCACT
1 CATATTGGATATAGTATTGTTGAAGATCTTTTTTTTTTATCATCATTTGTTGTAATTTCTTCACT
3004836 CTTACTCTTG-GGTTTATATCATT
66 CTTACTCTTGTGGTTTATATCATT
* ** ** *
3004859 CATATTGGATATAGTCTTGTTGAAGATCTTCTTTTGATTATCATC--TT-TCATAGTTTCTTCAC
1 CATATTGGATATAGTATTGTTGAAGATCTT-TTTTTTTTATCATCATTTGTTGTAATTTCTTCAC
*
3004921 TCTTGCTCTTGT
65 TCTTACTCTTGT
3004933 AATAATCTAT
Statistics
Matches: 145, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
86 22 0.15
87 28 0.19
88 42 0.29
89 53 0.37
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.51
Consensus pattern (89 bp):
CATATTGGATATAGTATTGTTGAAGATCTTTTTTTTTTATCATCATTTGTTGTAATTTCTTCACT
CTTACTCTTGTGGTTTATATCATT
Found at i:3006801 original size:66 final size:65
Alignment explanation
Indices: 3006731--3006911 Score: 245
Period size: 67 Copynumber: 2.7 Consensus size: 65
3006721 ACATTTTGTA
3006731 GGCTTTCTTAACCTTTTCATTTTTTTTATTTTAAAAATAATATTTATTAATTAATTGTGTATCTT
1 GGCTTTCTTAA-CTTTTCATTTTTTTTATTTTAAAAATAATATTTATTAATTAATTGTGTATCTT
3006796 T
65 T
* * * *
3006797 GGCTTTCTTTAATTTTTCATTTTCTTTGATTTTAAAAATAATATATATTAATTAATTTTGTATCT
1 GGCTTTC-TTAACTTTTCATTTT-TTTTATTTTAAAAATAATATTTATTAATTAATTGTGTATCT
3006862 TT
64 TT
* * * *
3006864 AGCTTTATTTATCTTTTCAATTTTTTTAGTTTTAAAAATAATATTTAT
1 GGCTTT-CTTAACTTTTCATTTTTTTTA-TTTTAAAAATAATATTTAT
3006912 CTATTATTAC
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
66 21 0.21
67 79 0.79
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.58
Consensus pattern (65 bp):
GGCTTTCTTAACTTTTCATTTTTTTTATTTTAAAAATAATATTTATTAATTAATTGTGTATCTTT
Found at i:3007499 original size:16 final size:17
Alignment explanation
Indices: 3007480--3007511 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
3007470 TAATTTATTA
3007480 TATTTTTT-ATTTTTCT
1 TATTTTTTGATTTTTCT
3007496 TATTTTTTGATTTTTC
1 TATTTTTTGATTTTTC
3007512 ATCATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.78
Consensus pattern (17 bp):
TATTTTTTGATTTTTCT
Found at i:3009010 original size:2 final size:2
Alignment explanation
Indices: 3009003--3009033 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
3008993 CAACTGAGTT
3009003 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3009034 GACACTATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:3009072 original size:15 final size:15
Alignment explanation
Indices: 3009052--3009081 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
3009042 CCATCTTCAA
3009052 TTTTATTATAAAAAT
1 TTTTATTATAAAAAT
*
3009067 TTTTATTATATAAAT
1 TTTTATTATAAAAAT
3009082 CATCATTCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTATTATAAAAAT
Found at i:3011871 original size:16 final size:17
Alignment explanation
Indices: 3011850--3011887 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
3011840 GAAATGTAAA
*
3011850 AAAATTACAAATTTAT-
1 AAAATTACAAAATTATC
*
3011866 AAAATTATAAAATTATC
1 AAAATTACAAAATTATC
3011883 AAAAT
1 AAAAT
3011888 GAAAACACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATTACAAAATTATC
Found at i:3012721 original size:15 final size:17
Alignment explanation
Indices: 3012685--3012719 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
3012675 TTGAGACTTC
*
3012685 ATAATTTACCAAAAAAT
1 ATAAATTACCAAAAAAT
3012702 ATAAATTACCAAAAAAT
1 ATAAATTACCAAAAAAT
3012719 A
1 A
3012720 AAGGTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAATTACCAAAAAAT
Found at i:3017179 original size:18 final size:19
Alignment explanation
Indices: 3017156--3017196 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
3017146 TTGATATAAA
*
3017156 ATATAATATATAAT-TTTT
1 ATATAAAATATAATATTTT
3017174 ATATAAAATATAATATTTT
1 ATATAAAATATAATATTTT
3017193 ATAT
1 ATAT
3017197 GATGACATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATATAAAATATAATATTTT
Found at i:3018455 original size:17 final size:18
Alignment explanation
Indices: 3018422--3018457 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
3018412 TAATAGGTGA
3018422 TTATAATTATAATTTTTT
1 TTATAATTATAATTTTTT
3018440 TTAT-ATTAGTAATTTTTT
1 TTATAATTA-TAATTTTTT
3018458 AGAAAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
TTATAATTATAATTTTTT
Found at i:3022106 original size:28 final size:27
Alignment explanation
Indices: 3022064--3022119 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 27
3022054 ACTAAATCAG
3022064 AAAGGAGAATCGTTGATTTCAAACAGCA
1 AAAGGAGAATCGTTGATTTC-AACAGCA
*
3022092 AAAGGAGAATTGTTGATTTCAACAGCA
1 AAAGGAGAATCGTTGATTTCAACAGCA
3022119 A
1 A
3022120 GCTATATGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.23
Consensus pattern (27 bp):
AAAGGAGAATCGTTGATTTCAACAGCA
Found at i:3026332 original size:390 final size:382
Alignment explanation
Indices: 3025618--3026366 Score: 1209
Period size: 390 Copynumber: 1.9 Consensus size: 382
3025608 TATTAAGATG
3025618 AAATGATAGTAAATAAATGTAAATTAAAATTTTATTTTTTAAATTGTAATATTTTATTATAAATT
1 AAATGATAGTAAATAAATGTAAATTAAAATTTTATTTTTTAAATTGTAATATTTTATTATAAATT
*
3025683 TTATATTTTAAAAGTAATATTTATTATAACAAGTTTAAAAATAATTTATTTTTTAAAATAATTTT
66 TTATATTTTAAAAGTAATATTTATTAAAACAAGTTTAAAAATAATTTATTTTTTAAAATAATTTT
3025748 ATAATAATATAATCTTTTTATTTTTATTATAAATTTAAAAAATAGTTTTTTTAATTAAAATATTT
131 ATAATAATATAATCTTTTTATTTTTATTATAAATTTAAAAAATAGTTTTTTTAATTAAAATATTT
*
3025813 TTTTACATAATTTATATTATAAAAATTAATTTACATATCCATAAATATATTTATTAATTAATAAT
196 TTTTACATAATTTATATTATAAAAATTAATTTACATATCAATAAATATATTTATTAATTAATAAT
*
3025878 TTGATTATATTTTATTATAAAATAAATAAATATTACAAATAATTTACAAATTATTATATTTAAAT
261 TTAATTATATTTTATTATAAAATAAATAAATATTACAAATAATTTACAAATTATTATATTTAAAT
3025943 AACATTAAAATCATT-ATTATATAAATATTACAATACACATAATTTTTTTATATTTTT
326 AACATTAAAATCATTAATTA-ATAAATATTACAATACACATAATTTTTTTATATTTTT
3026000 AAATGATAGTAAATAAATGTAAATTAAAATTTTATTTTTTAAATTGTAATTATTTTATATTATAA
1 AAATGATAGTAAATAAATGTAAATTAAAATTTTATTTTTTAAATTGTAA-TA-TTT-TATTATAA
* *
3026065 ATTTTATATTTTAAAAGTAATATTTATTAAAACAAGTTTAAACATAATTTATGTTTTTTAAATAA
63 ATTTTATATTTTAAAAGTAATATTTATTAAAACAAGTTTAAAAATAATTTAT-TTTTTAAAATAA
* * * *
3026130 TTTTATAGTAATATAATCTTTTTATTTTT-TTCCT-GATTTAATAAATTAGTTTTATTTTTTAAT
127 TTTTATAATAATATAATCTTTTTATTTTTATT-ATAAATTTAA-AAAATAG---T-TTTTTTAAT
*
3026193 TGAAATA-TTTTTTACATAATTTATATTATAAAAATTAATTTACATATCAATAAATATATTTATT
186 TAAAATATTTTTTTACATAATTTATATTATAAAAATTAATTTACATATCAATAAATATATTTATT
* * *
3026257 AATTTAATAATTTAATTATATTTTATTGTAAAATAAATAAATATTACAAATATTTTATAAATTAT
251 AA-TTAATAATTTAATTATATTTTATTATAAAATAAATAAATATTACAAATAATTTACAAATTAT
* * *
3026322 TATTTTTAAATAATATTAAAATCATTAAATTAATAACTATTACAA
315 TATATTTAAATAACATTAAAATCATT-AATTAATAAATATTACAA
3026367 CGCAAAATTT
Statistics
Matches: 338, Mismatches: 16, Indels: 17
0.91 0.04 0.05
Matches are distributed among these distances:
382 49 0.14
383 2 0.01
384 3 0.01
385 66 0.20
386 46 0.14
389 59 0.17
390 97 0.29
391 12 0.04
392 4 0.01
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (382 bp):
AAATGATAGTAAATAAATGTAAATTAAAATTTTATTTTTTAAATTGTAATATTTTATTATAAATT
TTATATTTTAAAAGTAATATTTATTAAAACAAGTTTAAAAATAATTTATTTTTTAAAATAATTTT
ATAATAATATAATCTTTTTATTTTTATTATAAATTTAAAAAATAGTTTTTTTAATTAAAATATTT
TTTTACATAATTTATATTATAAAAATTAATTTACATATCAATAAATATATTTATTAATTAATAAT
TTAATTATATTTTATTATAAAATAAATAAATATTACAAATAATTTACAAATTATTATATTTAAAT
AACATTAAAATCATTAATTAATAAATATTACAATACACATAATTTTTTTATATTTTT
Found at i:3027793 original size:63 final size:62
Alignment explanation
Indices: 3027686--3027871 Score: 246
Period size: 63 Copynumber: 3.0 Consensus size: 62
3027676 CATCTTTGAG
* * * * *
3027686 TAGAGATATATGCACTTACAACTGAGTTAAATGTTCGAGTTAAAGGTTGTTCGAGCAAGCTCA
1 TAGATATATATGCACTTACTATTGAGTTAAATGTTCG-GTTAAAGCTTGCTCGAGCAAGCTCA
* * **
3027749 TAGATATCTATGCACTTACTGTTGAGTTAAATGTTCAGGTTAAAGCTTGCTCGAGCAAGCTTG
1 TAGATATATATGCACTTACTATTGAGTTAAATGTTC-GGTTAAAGCTTGCTCGAGCAAGCTCA
* *
3027812 TAGATATATATGCACTTACTATTGAGTTAAATGTTCGGGTTAAAGCTTGCTTGAGAAAGC
1 TAGATATATATGCACTTACTATTGAGTTAAATGTTC-GGTTAAAGCTTGCTCGAGCAAGC
3027872 AAGTCTGAAG
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
63 107 0.99
64 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (62 bp):
TAGATATATATGCACTTACTATTGAGTTAAATGTTCGGTTAAAGCTTGCTCGAGCAAGCTCA
Found at i:3028528 original size:104 final size:102
Alignment explanation
Indices: 3028345--3028546 Score: 314
Period size: 104 Copynumber: 2.0 Consensus size: 102
3028335 GAGTTGACAG
*
3028345 TTTTTTAGGAGAGTTAACTTCCCTTCTCTTTTGTACATAAACACAGTAAAGCTAACACAAGCACA
1 TTTTTTAGGAGAGTTAACTTCCCTTCACTTTTGTACATAAACACAGTAAAGCTAACACAAGCACA
* *
3028410 AAACTTAGAGTTTCAGTGATTGTTTCTAGCTTGGAAT
66 AAACTTAGAGTTTCAGTGATTGTCTCTAACTTGGAAT
* **
3028447 TTTTTTAGGAGAGTTAAATCTTCCCTTCACTTTTGTACATAAACACAGTAAAGCTTACACAAGTT
1 TTTTTTAGGAGAGTT-AA-CTTCCCTTCACTTTTGTACATAAACACAGTAAAGCTAACACAAGCA
* *
3028512 CAAAACTTGGATTTTCAGTGATTGTCTCTAACTTG
64 CAAAACTTAGAGTTTCAGTGATTGTCTCTAACTTG
3028547 AGTGTTTGTT
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
102 15 0.17
103 2 0.02
104 73 0.81
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (102 bp):
TTTTTTAGGAGAGTTAACTTCCCTTCACTTTTGTACATAAACACAGTAAAGCTAACACAAGCACA
AAACTTAGAGTTTCAGTGATTGTCTCTAACTTGGAAT
Found at i:3028555 original size:19 final size:20
Alignment explanation
Indices: 3028528--3028574 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
3028518 TTGGATTTTC
*
3028528 AGTGATTGTCTCTAAC-TTG
1 AGTGTTTGTCTCTAACTTTG
* *
3028547 AGTGTTTGTTTCTAGCTTTG
1 AGTGTTTGTCTCTAACTTTG
*
3028567 AGTTTTTG
1 AGTGTTTG
3028575 ATATCTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.15, C:0.11, G:0.23, T:0.51
Consensus pattern (20 bp):
AGTGTTTGTCTCTAACTTTG
Found at i:3037310 original size:24 final size:25
Alignment explanation
Indices: 3037257--3037311 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
3037247 TTCATGAACA
*
3037257 ATAAACAAACCATAACCAAACAAAT
1 ATAAACAAACCATAACCAAACAAAC
* * *
3037282 TTAAACAAACGA-ACCCAAACAAAC
1 ATAAACAAACCATAACCAAACAAAC
3037306 ATAAAC
1 ATAAAC
3037312 GAACATTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.62, C:0.25, G:0.02, T:0.11
Consensus pattern (25 bp):
ATAAACAAACCATAACCAAACAAAC
Found at i:3037384 original size:11 final size:11
Alignment explanation
Indices: 3037368--3037408 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
3037358 TAGTATTATT
3037368 ATAAACGAACA
1 ATAAACGAACA
*
3037379 ATAAACAAACA
1 ATAAACGAACA
* *
3037390 ATAAATGAACG
1 ATAAACGAACA
3037401 ATAAACGA
1 ATAAACGA
3037409 GCCGTAAACG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.63, C:0.15, G:0.10, T:0.12
Consensus pattern (11 bp):
ATAAACGAACA
Found at i:3046713 original size:53 final size:53
Alignment explanation
Indices: 3046634--3046747 Score: 133
Period size: 53 Copynumber: 2.2 Consensus size: 53
3046624 AAGTTACACA
** * * * *
3046634 CAAA-TTGAGGAATCCGGTATGTATCTTGA-TAAATATTGCATCTAAAGTCTTT
1 CAAATTTGAGGAATCCACTATGCATCTTGATTAAA-ATGGCAACTAAAGTCCTT
*
3046686 CAAATTTGAGGAATCCACTATGCATCTTGATTGAAATGGCAACTAAAGTCCTT
1 CAAATTTGAGGAATCCACTATGCATCTTGATTAAAATGGCAACTAAAGTCCTT
3046739 CAGAATTTG
1 CA-AATTTG
3046748 GTAACCTGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
52 4 0.08
53 39 0.75
54 9 0.17
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (53 bp):
CAAATTTGAGGAATCCACTATGCATCTTGATTAAAATGGCAACTAAAGTCCTT
Found at i:3048466 original size:2 final size:2
Alignment explanation
Indices: 3048461--3048497 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
3048451 TCTCTCTCTC
3048461 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3048498 GTAAGTTGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3052277 original size:14 final size:14
Alignment explanation
Indices: 3052244--3052270 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3052234 CTATATTTTT
3052244 ATAAGTAAAGTTTC
1 ATAAGTAAAGTTTC
3052258 ATAAGTAAAGTTT
1 ATAAGTAAAGTTT
3052271 GTAAAGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.37
Consensus pattern (14 bp):
ATAAGTAAAGTTTC
Found at i:3056670 original size:25 final size:25
Alignment explanation
Indices: 3056640--3056694 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
3056630 GAATCTGATT
*
3056640 ATTTTAAGATACTTGCAGAAACTAC
1 ATTTTAAGATACTTACAGAAACTAC
3056665 ATTTTAAGATACTTACAGAAACTAC
1 ATTTTAAGATACTTACAGAAACTAC
*
3056690 TTTTT
1 ATTTT
3056695 CTTGTTATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (25 bp):
ATTTTAAGATACTTACAGAAACTAC
Found at i:3064669 original size:53 final size:53
Alignment explanation
Indices: 3064590--3064703 Score: 133
Period size: 53 Copynumber: 2.2 Consensus size: 53
3064580 AAGTTACACA
** * * * *
3064590 CAAA-TTGAGGAATCCGGTATGTATCTTGA-TAAATATTGCATCTAAAGTCTTT
1 CAAATTTGAGGAATCCACTATGCATCTTGATTAAA-ATGGCAACTAAAGTCCTT
*
3064642 CAAATTTGAGGAATCCACTATGCATCTTGATTGAAATGGCAACTAAAGTCCTT
1 CAAATTTGAGGAATCCACTATGCATCTTGATTAAAATGGCAACTAAAGTCCTT
3064695 CAGAATTTG
1 CA-AATTTG
3064704 GTAACCTGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
52 4 0.08
53 39 0.75
54 9 0.17
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (53 bp):
CAAATTTGAGGAATCCACTATGCATCTTGATTAAAATGGCAACTAAAGTCCTT
Found at i:3066417 original size:2 final size:2
Alignment explanation
Indices: 3066412--3066444 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
3066402 TCTCTCTCTC
3066412 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3066445 GTAAGTTGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3070135 original size:19 final size:20
Alignment explanation
Indices: 3070098--3070135 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
3070088 TATGATAATT
*
3070098 ATTAAAATCAGATTGATTTG
1 ATTAAAATCAGATTAATTTG
*
3070118 ATTAAATTCA-ATTAATTT
1 ATTAAAATCAGATTAATTT
3070136 CTGTTAATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (20 bp):
ATTAAAATCAGATTAATTTG
Found at i:3072221 original size:7 final size:7
Alignment explanation
Indices: 3072209--3072256 Score: 69
Period size: 7 Copynumber: 6.4 Consensus size: 7
3072199 AAATCTTATA
3072209 TTTATTT
1 TTTATTT
3072216 TTTATTT
1 TTTATTT
3072223 TTTATTGT
1 TTTATT-T
3072231 TATTATTT
1 T-TTATTT
3072239 TTTATTT
1 TTTATTT
3072246 TTTATTAT
1 TTTATT-T
3072254 TTT
1 TTT
3072257 TACACTTATC
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
7 25 0.66
8 8 0.21
9 5 0.13
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (7 bp):
TTTATTT
Found at i:3075829 original size:439 final size:438
Alignment explanation
Indices: 3074883--3075931 Score: 1900
Period size: 439 Copynumber: 2.4 Consensus size: 438
3074873 AAAATTTTCA
* *
3074883 ATCTTATTAAACTATTGAAAGATTTAATAATTCTTTCTAAAAATTTTTATAAATAAATATTCGAA
1 ATCTTATTAAACTATTGAAAGATTTAATAATTCTTTTTAAAAATTTTTATAAATAAATATTTGAA
* * **
3074948 TAAAAATCCACCAAATTATTAGAGAATATGCATTGGTATAAAATCTTAACAAATATTGGAGGATT
66 TAAAAATCCACCAAACTATTAGAGAATGTGCATTGAAATAAAATCTTAACAAATATTGGAGGATT
*
3075013 TTATTGATTTTTTAAAAAAGTAATTAACTCATTAATGAATCCAACAACAAAGTCTATTCAAAGTA
131 TTATTGATTTTTTTAAAAAGTAATTAACTCATTAATGAATCCAACAACAAAGTCTATTCAAAGTA
*
3075078 AATTTTGCAATCCTACCAAATTATTAGAGGATTTAAATCTCAAACTAAACCTTACCAAACTATTG
196 AAATTTGCAATCCTACCAAATTATTAGAGGATTTAAATCTCAAACTAAACCTTACCAAACTATTG
*
3075143 GAGGGTTTAATTATATTTTAACAATTTGCTAAAAAAATTTGAATCAATTTTATCAAATTATTGAA
261 AAGGGTTTAATTATATTTTAACAATTTGCTAAAAAAATTTGAATCAATTTTATCAAATTATTGAA
* *
3075208 GGCTTTAAATTTCAAATTAAGTCTTATCAAAATATTGTAAGATTTAATGATTTTATAAAAAAATT
326 GGATTTAAATTTCAAATTAAGTCTCATCAAAATATTGTAAGATTTAATGATTTTATAAAAAAATT
*
3075273 AAAAATTTCAGTCATACTAAACTATTGGAGAATTTAAATATCAAGTTT
391 AAAAATTTCAATCATACTAAACTATTGGAGAATTTAAATATCAAGTTT
3075321 ATCTTATTAAACTATTGAAAGATTTAATAATTCTTTTTAAAAATTTTTATAAATAAATATTTGAA
1 ATCTTATTAAACTATTGAAAGATTTAATAATTCTTTTTAAAAATTTTTATAAATAAATATTTGAA
3075386 TAAAAATCCACCAAACTATTAGAGAATGTGCATTGAAATAAAATCTTAACAAATATTGGAGGATT
66 TAAAAATCCACCAAACTATTAGAGAATGTGCATTGAAATAAAATCTTAACAAATATTGGAGGATT
3075451 TTATTGATTTTTTTAAAAAGTAATTAACTCATTAATGAATCCAACAACAAAGTCTATTCAAAGTA
131 TTATTGATTTTTTTAAAAAGTAATTAACTCATTAATGAATCCAACAACAAAGTCTATTCAAAGTA
* * *
3075516 AAATTTGTAATTCTACCAAATTATTGGAGGATTTAAATCTCAAACTAAACCTTACCAAACTATTG
196 AAATTTGCAATCCTACCAAATTATTAGAGGATTTAAATCTCAAACTAAACCTTACCAAACTATTG
3075581 AAGGGTTTAATTATATTTTAACAATTTGCTAAAAAAAATTTGAATCAATTTTATCAAATTATTGA
261 AAGGGTTTAATTATATTTTAACAATTTGCT-AAAAAAATTTGAATCAATTTTATCAAATTATTGA
*
3075646 AGGATTTAAATTTCAAATTAAGTCTCATCAAATTATTGTAAGATTTAATGATTTTATAAAAAAAT
325 AGGATTTAAATTTCAAATTAAGTCTCATCAAAATATTGTAAGATTTAATGATTTTATAAAAAAAT
3075711 TAAAAATTTCAATCATACTAAACTATTGGAGAATTTAAATATCAAGTTT
390 TAAAAATTTCAATCATACTAAACTATTGGAGAATTTAAATATCAAGTTT
*
3075760 ATCTTATTAAACTATTGAAAGATTTAATAATTCTTTTTAAAAAATTTTATAAATAAATATTTGAA
1 ATCTTATTAAACTATTGAAAGATTTAATAATTCTTTTTAAAAATTTTTATAAATAAATATTTGAA
*
3075825 TAAAAATCCACCAAACTATTAGAGAATGTGCATTGAAATAAAATCTTATCAAATATTGGAGGATT
66 TAAAAATCCACCAAACTATTAGAGAATGTGCATTGAAATAAAATCTTAACAAATATTGGAGGATT
* *
3075890 TAATTGATTATTTTTAAAAAGTAATTAACTTATTAATGAATC
131 TTATTGATT-TTTTTAAAAAGTAATTAACTCATTAATGAATC
3075932 TGAAAAGGGA
Statistics
Matches: 589, Mismatches: 20, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
438 278 0.47
439 280 0.48
440 31 0.05
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.38
Consensus pattern (438 bp):
ATCTTATTAAACTATTGAAAGATTTAATAATTCTTTTTAAAAATTTTTATAAATAAATATTTGAA
TAAAAATCCACCAAACTATTAGAGAATGTGCATTGAAATAAAATCTTAACAAATATTGGAGGATT
TTATTGATTTTTTTAAAAAGTAATTAACTCATTAATGAATCCAACAACAAAGTCTATTCAAAGTA
AAATTTGCAATCCTACCAAATTATTAGAGGATTTAAATCTCAAACTAAACCTTACCAAACTATTG
AAGGGTTTAATTATATTTTAACAATTTGCTAAAAAAATTTGAATCAATTTTATCAAATTATTGAA
GGATTTAAATTTCAAATTAAGTCTCATCAAAATATTGTAAGATTTAATGATTTTATAAAAAAATT
AAAAATTTCAATCATACTAAACTATTGGAGAATTTAAATATCAAGTTT
Found at i:3078944 original size:104 final size:104
Alignment explanation
Indices: 3078764--3078971 Score: 317
Period size: 104 Copynumber: 2.0 Consensus size: 104
3078754 GTACATGCAC
* * * * *
3078764 AGTATTTACTTTTATAACTAGAGTAAACATTTTATGTCAGTCAATCCCTTATATTTGTGTAAAAC
1 AGTATTTAATTTCACAACTAGAGCAAACATTTTATGTCAGTCAATCCCTTATATTTATGTAAAAC
* *
3078829 CTTTAGTTACCAACCTTGTCTTGTAATGCTCCAAGGTCT
66 CTTTAGTTACCAACCTTGCCTTGTAACGCTCCAAGGTCT
* * *
3078868 AGTATTTAATTTCACAACTAGAGCAAACATTTTGTGTTAGTCAATCCTTTATATTTATGTAAAAC
1 AGTATTTAATTTCACAACTAGAGCAAACATTTTATGTCAGTCAATCCCTTATATTTATGTAAAAC
*
3078933 TTTTAGTTACCAACCTTGCCTTGTAACGCTCCAAGGTCT
66 CTTTAGTTACCAACCTTGCCTTGTAACGCTCCAAGGTCT
3078972 CGTTTGATTT
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
104 93 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.39
Consensus pattern (104 bp):
AGTATTTAATTTCACAACTAGAGCAAACATTTTATGTCAGTCAATCCCTTATATTTATGTAAAAC
CTTTAGTTACCAACCTTGCCTTGTAACGCTCCAAGGTCT
Found at i:3079709 original size:16 final size:16
Alignment explanation
Indices: 3079688--3079719 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
3079678 AGCTACTTTC
3079688 AAGAAATGCTTATTTT
1 AAGAAATGCTTATTTT
3079704 AAGAAATGCTTATTTT
1 AAGAAATGCTTATTTT
3079720 TTTCCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
AAGAAATGCTTATTTT
Found at i:3083067 original size:84 final size:83
Alignment explanation
Indices: 3082906--3083145 Score: 277
Period size: 84 Copynumber: 2.8 Consensus size: 83
3082896 TTATGAGTGA
**
3082906 TGATTATTACTAGAGAAATTTCTTGGTCCTTTACACG-AACGGTGCTCTTCTATTATTATATCCC
1 TGATTATTACCGGAGAAATTTCTTGGTCCTTT--ACGTAACGGTGCTCTTCTATTATTATATCCC
* *
3082970 AAACTACTGAGTTTTACAATT
64 -AACAAGTGAGTTTTACAATT
3082991 TGATTATTACCGGAGAAATTTCTTGGTCCTTTACGTAACGGTGCTCTTCTATTATTATATCTCCA
1 TGATTATTACCGGAGAAATTTCTTGGTCCTTTACGTAACGGTGCTCTTCTATTATTATATC-CCA
*
3083056 ACAAGTGAGTTTTATAATT
65 ACAAGTGAGTTTTACAATT
* * * * * * * * *
3083075 TGACTACTGCCGGATAAATTTCTTGGTCCTTCACCTGAACGATGC-CGGTCGATTATTATATCCC
1 TGATTATTACCGGAGAAATTTCTTGGTCCTTTACGT-AACGGTGCTC-TTCTATTATTATAT-CC
3083139 CAACAAG
63 CAACAAG
3083146 GAAAAAACTT
Statistics
Matches: 136, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
83 3 0.02
84 73 0.54
85 59 0.43
86 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (83 bp):
TGATTATTACCGGAGAAATTTCTTGGTCCTTTACGTAACGGTGCTCTTCTATTATTATATCCCAA
CAAGTGAGTTTTACAATT
Found at i:3095490 original size:18 final size:18
Alignment explanation
Indices: 3095464--3095498 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3095454 AGTATTTGAA
* *
3095464 TTGGTTTTAGTGTTAATT
1 TTGGGTTTAATGTTAATT
3095482 TTGGGTTTAATGTTAAT
1 TTGGGTTTAATGTTAAT
3095499 ATTGCAGACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (18 bp):
TTGGGTTTAATGTTAATT
Found at i:3098685 original size:29 final size:28
Alignment explanation
Indices: 3098634--3098702 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
3098624 GATAATATTG
*
3098634 ATATTAAAATATTAATTTTTTAA-ATTAAA
1 ATATT-AAATAATAATTTTTTAATA-TAAA
*
3098663 ATATTAAATAATAATTTTATTAATATAAT
1 ATATTAAATAATAATTTT-TTAATATAAA
3098692 ATATATAAATA
1 ATAT-TAAATA
3098703 TAAAATTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 12 0.34
29 16 0.46
30 7 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
ATATTAAATAATAATTTTTTAATATAAA
Found at i:3100999 original size:19 final size:20
Alignment explanation
Indices: 3100971--3101009 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
3100961 TCAATTTTTT
*
3100971 AATAAAAAAA-TTTTAAAAA
1 AATAAAAAAAGGTTTAAAAA
*
3100990 AATAACAAAAGGTTTAAAAA
1 AATAAAAAAAGGTTTAAAAA
3101010 CCAAAATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (20 bp):
AATAAAAAAAGGTTTAAAAA
Found at i:3101132 original size:19 final size:19
Alignment explanation
Indices: 3101071--3101136 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
3101061 GATCTAATTG
*
3101071 AAAAAACAAGAAAGAAAGAAA
1 AAAAAACTA-AAA-AAAGAAA
* *
3101092 GAAAAAACTAAAAAAGGGAA
1 -AAAAAACTAAAAAAAGAAA
*
3101112 AAAAAACTAAAAAAATAAA
1 AAAAAACTAAAAAAAGAAA
3101131 AAAAAA
1 AAAAAA
3101137 GGTAAAAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
19 22 0.58
20 5 0.13
21 3 0.08
22 8 0.21
ACGTcount: A:0.80, C:0.05, G:0.11, T:0.05
Consensus pattern (19 bp):
AAAAAACTAAAAAAAGAAA
Found at i:3101748 original size:12 final size:12
Alignment explanation
Indices: 3101731--3101755 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3101721 ATTATATATT
3101731 AAGAAAAAAAAA
1 AAGAAAAAAAAA
3101743 AAGAAAAAAAAA
1 AAGAAAAAAAAA
3101755 A
1 A
3101756 CAAAGGAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAAAA
Found at i:3102022 original size:19 final size:19
Alignment explanation
Indices: 3101995--3102041 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
3101985 CTAATTTAAA
*
3101995 AAAGTAAAAATCAAA-AAAC
1 AAAG-AAAAAACAAAGAAAC
*
3102014 AAAGAAAAAACAAAGAAAT
1 AAAGAAAAAACAAAGAAAC
3102033 AAA-AAAAAA
1 AAAGAAAAAA
3102042 GCTCATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.81, C:0.06, G:0.06, T:0.06
Consensus pattern (19 bp):
AAAGAAAAAACAAAGAAAC
Found at i:3102023 original size:11 final size:11
Alignment explanation
Indices: 3102007--3102031 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3101997 AGTAAAAATC
3102007 AAAAAACAAAG
1 AAAAAACAAAG
3102018 AAAAAACAAAG
1 AAAAAACAAAG
3102029 AAA
1 AAA
3102032 TAAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAACAAAG
Found at i:3103981 original size:24 final size:23
Alignment explanation
Indices: 3103954--3104029 Score: 61
Period size: 24 Copynumber: 3.3 Consensus size: 23
3103944 AATGTATTTT
3103954 ATTAAATTAAGATATTAAATAATA
1 ATTAAATTAA-ATATTAAATAATA
* *
3103978 ATTATATT-AATA-T-AATAATTT
1 ATTAAATTAAATATTAAATAA-TA
3103999 ATATAAATATAAA-ATTAAATAATTA
1 AT-TAAAT-TAAATATTAAATAA-TA
3104024 ATTAAA
1 ATTAAA
3104030 ATATAATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
20 5 0.12
21 4 0.10
22 7 0.17
23 3 0.07
24 14 0.33
25 9 0.21
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (23 bp):
ATTAAATTAAATATTAAATAATA
Found at i:3103994 original size:17 final size:17
Alignment explanation
Indices: 3103965--3104015 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 17
3103955 TTAAATTAAG
3103965 ATATTAA-ATAATAATT
1 ATATTAATATAATAATT
3103981 ATATTAATATAATAATTT
1 ATATTAATATAATAA-TT
*
3103999 ATATAAATATAA-AATT
1 ATATTAATATAATAATT
3104015 A
1 A
3104016 AATAATTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 10 0.31
17 9 0.28
18 13 0.41
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATTAATATAATAATT
Found at i:3104016 original size:45 final size:48
Alignment explanation
Indices: 3103928--3104027 Score: 122
Period size: 47 Copynumber: 2.1 Consensus size: 48
3103918 AGATTATATT
*
3103928 TTAATTATATATAAATAATGTATTTTATTAAATTAAGATATTAAATAA
1 TTAATTATATATAAATAATGAATTTTATTAAATTAAGATATTAAATAA
3103976 -TAATTATAT-TAATATAAT-AA-TTTATATAAATATAA-A-ATTAAATAA
1 TTAATTATATATAA-ATAATGAATTTTAT-TAAAT-TAAGATATTAAATAA
3104021 TTAATTA
1 TTAATTA
3104028 AAATATAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
45 14 0.30
46 16 0.34
47 17 0.36
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (48 bp):
TTAATTATATATAAATAATGAATTTTATTAAATTAAGATATTAAATAA
Found at i:3104251 original size:19 final size:18
Alignment explanation
Indices: 3104218--3104254 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
3104208 ATTGATTTTT
*
3104218 TTTACAAAATTTATTTAA
1 TTTAAAAAATTTATTTAA
3104236 TTTAAAAAAGTTTATTTAA
1 TTTAAAAAA-TTTATTTAA
3104255 AAAAATGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
TTTAAAAAATTTATTTAA
Found at i:3104738 original size:14 final size:15
Alignment explanation
Indices: 3104707--3104741 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
3104697 ACTAAAAAAG
3104707 AGAAAAGAAATGAAA
1 AGAAAAGAAATGAAA
*
3104722 AGAAAAGAGAT-AAA
1 AGAAAAGAAATGAAA
3104736 AGAAAA
1 AGAAAA
3104742 AAAAGTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.06
Consensus pattern (15 bp):
AGAAAAGAAATGAAA
Found at i:3105636 original size:7 final size:7
Alignment explanation
Indices: 3105620--3105675 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
3105610 TATCTAATTT
3105620 TAAAAAA
1 TAAAAAA
*
3105627 TAAAATA
1 TAAAAAA
3105634 TAAAAATA
1 TAAAAA-A
3105642 TAAAAAA
1 TAAAAAA
3105649 TAAAAAA
1 TAAAAAA
*
3105656 CTAAGAAA
1 -TAAAAAA
*
3105664 CAAAAAA
1 TAAAAAA
3105671 -AAAAA
1 TAAAAA
3105676 GCTCATAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
6 5 0.12
7 24 0.57
8 13 0.31
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (7 bp):
TAAAAAA
Found at i:3105644 original size:15 final size:14
Alignment explanation
Indices: 3105620--3105675 Score: 60
Period size: 15 Copynumber: 3.9 Consensus size: 14
3105610 TATCTAATTT
*
3105620 TAAAAAATAAAATA
1 TAAAAAATAAAAAA
3105634 TAAAAATATAAAAAA
1 TAAAAA-ATAAAAAA
*
3105649 TAAAAAACTAAGAAA
1 TAAAAAA-TAAAAAA
*
3105664 CAAAAAA-AAAAA
1 TAAAAAATAAAAA
3105676 GCTCATAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
13 4 0.11
14 7 0.19
15 25 0.69
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (14 bp):
TAAAAAATAAAAAA
Found at i:3107169 original size:33 final size:31
Alignment explanation
Indices: 3107132--3107192 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
3107122 AGAAGATCAC
3107132 ATTAAA-AAAGAATTAAAATAAAATAAAAAACAA
1 ATTAAACAAAGAA--AAAATAAAA-AAAAAACAA
*
3107165 ATTAAACAAGGAAAAAATAAAAAAAAAA
1 ATTAAACAAAGAAAAAATAAAAAAAAAA
3107193 GTGAGTCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 6 0.23
32 9 0.35
33 6 0.23
34 5 0.19
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (31 bp):
ATTAAACAAAGAAAAAATAAAAAAAAAACAA
Found at i:3107210 original size:20 final size:20
Alignment explanation
Indices: 3107185--3107222 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3107175 GAAAAAATAA
3107185 AAAAAAAAGTGAGTCTCACG
1 AAAAAAAAGTGAGTCTCACG
*
3107205 AAAAAAATGTGAGTCTCA
1 AAAAAAAAGTGAGTCTCA
3107223 TATTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.18
Consensus pattern (20 bp):
AAAAAAAAGTGAGTCTCACG
Found at i:3111852 original size:23 final size:23
Alignment explanation
Indices: 3111825--3111870 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
3111815 TCAAATTCAA
*
3111825 AGCAAAATGTATGATACTACTTT
1 AGCAAAATGTATAATACTACTTT
*
3111848 AGCAAAATGTATAATATTACTTT
1 AGCAAAATGTATAATACTACTTT
3111871 TACTTGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (23 bp):
AGCAAAATGTATAATACTACTTT
Found at i:3113788 original size:49 final size:51
Alignment explanation
Indices: 3113718--3113813 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 51
3113708 TCAAAAGTCA
*
3113718 TTCTTAAATATTTAAACCTTCT-AATATGTTAGTAATGTTTTATTTTCATT
1 TTCTTAAATATTTAAAACTTCTCAATATGTTAGTAATGTTTTATTTTCATT
* *
3113768 TTCTTAAAT-TTTAAAACTTCTCAATATGTTGGTAATTTTTTATTTT
1 TTCTTAAATATTTAAAACTTCTCAATATGTTAGTAATGTTTTATTTT
3113814 TCAAAAATCA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
49 11 0.26
50 31 0.74
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.55
Consensus pattern (51 bp):
TTCTTAAATATTTAAAACTTCTCAATATGTTAGTAATGTTTTATTTTCATT
Found at i:3113882 original size:55 final size:57
Alignment explanation
Indices: 3113763--3113897 Score: 154
Period size: 56 Copynumber: 2.4 Consensus size: 57
3113753 TGTTTTATTT
* *
3113763 TCATTTTCTTAAATTTTAAAACTTCTCAATATGTTGGTAATTTTTTATTTTTCAAAAA
1 TCATTTT-TTAAAATTTAAAACTTCTCAATATGTTGGTAATTTTTTATATTTCAAAAA
*
3113821 TCA-TTTTTAAAATTTAAAACATT-T-AATATGTTGGTATGATTTTTT-TATTTC-ATAA
1 TCATTTTTTAAAATTTAAAAC-TTCTCAATATGTTGGTA--ATTTTTTATATTTCAAAAA
*
3113876 TTATTTTTTAAAATTTTAAAAC
1 TCATTTTTTAAAA-TTTAAAAC
3113898 CTTTCAACAT
Statistics
Matches: 68, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
55 17 0.25
56 28 0.41
57 20 0.29
58 3 0.04
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (57 bp):
TCATTTTTTAAAATTTAAAACTTCTCAATATGTTGGTAATTTTTTATATTTCAAAAA
Found at i:3114309 original size:56 final size:56
Alignment explanation
Indices: 3114239--3114381 Score: 163
Period size: 56 Copynumber: 2.5 Consensus size: 56
3114229 TTATTTCCAT
3114239 TTTTCTTAAATTTTAAAACCTTTCAATATGTT-G-ATA-ATTTTTTT-TTTACCAAAACTCA
1 TTTT-TTAAATTTTAAAACCTTTCAATAT-TTAGTA-AGATTTTTTTATTT--CAAAA-TCA
*
3114297 -TTTTTAAATTTTAAAACC-TTAAATATTTAGTAAGATTTTTTTATTTCAAAATCA
1 TTTTTTAAATTTTAAAACCTTTCAATATTTAGTAAGATTTTTTTATTTCAAAATCA
*
3114351 TTTTTTAAAATTTTAAAACCTTCCAATATTT
1 TTTTTT-AAATTTTAAAACCTTTCAATATTT
3114382 TGGCAAGGTT
Statistics
Matches: 75, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
54 5 0.07
55 19 0.25
56 37 0.49
57 14 0.19
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (56 bp):
TTTTTTAAATTTTAAAACCTTTCAATATTTAGTAAGATTTTTTTATTTCAAAATCA
Found at i:3114401 original size:472 final size:466
Alignment explanation
Indices: 3113519--3114588 Score: 1212
Period size: 472 Copynumber: 2.3 Consensus size: 466
3113509 TACCTTAGTT
* * * ** * * * *
3113519 TAATCTTTATTCCATATTGAATTATACCTTTA-TTACTAATTAGGTTAAACCTTTGCATTTTTGT
1 TAATCTTTATTCCATGTGGAATTATACC-TTACCTACTAGCTAGATTAAACCTTTACATTCTGGT
* * * * * ** * * **
3113583 GCCTCAACAA-ATAATTCATTATGCTTCAAATTTGAAGGTTGATGAGAG-ACATGGTACAAAGTA
65 GCCTCAA-AAGGTAACTCATTACGCTTCAAGTTTAAAGGCCGATAAG-GTGCATCATACAAAGTA
** * *
3113646 AGCATTGACCTCAAAAAACAAACATTGTAAAAATCACTTTTATGTAATTTTTTTTTTTATTTTCA
128 AGCATTGACCTCAAAAAACAAACATTACAAAAATCACTTTTATGTAATTTTTTTATTTATTTCCA
*
3113711 AAAGTCATTCTTAAATATTTAAACCTTCTAATATGTTAGTAATGTTTTATTTTCATTTTCTTAAA
193 AAAGTCATTCTTAAATATTTAAACCTTCTAATATGTTAGTAATGTTTTATTTCCATTTTCTTAAA
* *
3113776 TTTTAAAACTTCTCAATATGTTGGTAATTTTTTATTTTTCAAAAATCATTTTTAAAATTTAAAAC
258 TTTTAAAACTTCTCAATATGTTGATAATTTTTTATTTTCCAAAAATCATTTTTAAAATTTAAAAC
* * * * * *
3113841 ATTTAATATGTTGGTATGATTTTTTTATTTCATAATTATTTTTTAAAATTTTAAAACCTTTCAAC
323 ATTAAATATGTTAGTAAGATTTTTTTATTTCAAAATCATTTTTTAAAATTTTAAAACCTTCCAAC
** * * *
3113906 ATTTTGATGAGGTTTTTAAATAAAACAACCGATGTCTTTTACATTAATATTCTTTCTCCATTTAA
388 ATTTTGACAAGGTTTTGAAATAAAACAAACAATGTCTTTTACATTAATATTCTTTCTCCATTTAA
3113971 GTTATAATTTATTC
453 GTTATAATTTATTC
* * *
3113985 TAATCTTTATTCCATGTGGAATTATATTCTTACC-ACTATCTAGATTAAACCTTTGCATTCTGGC
1 TAATCTTTATTCCATGTGGAATTATA-CCTTACCTACTAGCTAGATTAAACCTTTACATTCTGG-
* * * * *
3114049 T-CCTCGACAA-GTAATTTATTATGTTTCAAGTTT-AAGGCCGATAAGGTGCATCATACAAAGTA
64 TGCCTC-AAAAGGTAACTCATTACGCTTCAAGTTTAAAGGCCGATAAGGTGCATCATACAAAGTA
* * * * * *
3114111 AGCATTGACTTTAGAAAACAAACTTTACAAAAATCATTTTTATGTAATTTTTTTATTTCTCTTCC
128 AGCATTGACCTCAAAAAACAAACATTACAAAAATCACTTTTATGTAATTTTTTTATTTAT-TTCC
* *
3114176 AAAA-TCATTTTTAAAT-TTCTAAGA-CTTTTAATATGTTATATGTTGAAAATGTTTTATTTCCA
192 AAAAGTCATTCTTAAATATT-TAA-ACCTTCTAATATG-T-TA-G-T---AATGTTTTATTTCCA
*
3114238 TTTTTCTTAAATTTTAAAACCTT-TCAATATGTTGATAATTTTTT-TTTTACCAAAACTCATTTT
248 -TTTTCTTAAATTTTAAAA-CTTCTCAATATGTTGATAATTTTTTATTTT-CCAAAAATCATTTT
* *
3114301 TAAATTTTAAAACCTTAAATAT-TTAGTAAGATTTTTTTATTTCAAAATCATTTTTTAAAATTTT
310 TAAAATTTAAAACATTAAATATGTTAGTAAGATTTTTTTATTTCAAAATCATTTTTTAAAATTTT
* * * *
3114365 AAAACCTTCCAATATTTTGGCAAGGTTTTGAAATAAAACAAACAATTTCTTTTACATTAATGTTC
375 AAAACCTTCCAACATTTTGACAAGGTTTTGAAATAAAACAAACAATGTCTTTTACATTAATATTC
* ** *
3114430 TTTTTCTGTTTAAGTTATACTTTATTC
440 TTTCTCCATTTAAGTTATAATTTATTC
* * * * *
3114457 TAATCTTTATTTCATGTTGAATTATACCTTTCCTACTAGCTAGGTTAAACCTTTACATTTTGGTG
1 TAATCTTTATTCCATGTGGAATTATACCTTACCTACTAGCTAGATTAAACCTTTACATTCTGGTG
** * *
3114522 CCTCAAAAGGTAACTCATTACGCTTCAAGTTTAAAGGTTGATGAGGTGCATCACACAAAGTAAGC
66 CCTCAAAAGGTAACTCATTACGCTTCAAGTTTAAAGGCCGATAAGGTGCATCATACAAAGTAAGC
3114587 AT
131 AT
3114589 GCAAAAATCA
Statistics
Matches: 508, Mismatches: 74, Indels: 37
0.82 0.12 0.06
Matches are distributed among these distances:
464 3 0.01
465 96 0.19
466 85 0.17
467 5 0.01
468 1 0.00
469 1 0.00
471 9 0.02
472 206 0.41
473 99 0.19
474 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (466 bp):
TAATCTTTATTCCATGTGGAATTATACCTTACCTACTAGCTAGATTAAACCTTTACATTCTGGTG
CCTCAAAAGGTAACTCATTACGCTTCAAGTTTAAAGGCCGATAAGGTGCATCATACAAAGTAAGC
ATTGACCTCAAAAAACAAACATTACAAAAATCACTTTTATGTAATTTTTTTATTTATTTCCAAAA
GTCATTCTTAAATATTTAAACCTTCTAATATGTTAGTAATGTTTTATTTCCATTTTCTTAAATTT
TAAAACTTCTCAATATGTTGATAATTTTTTATTTTCCAAAAATCATTTTTAAAATTTAAAACATT
AAATATGTTAGTAAGATTTTTTTATTTCAAAATCATTTTTTAAAATTTTAAAACCTTCCAACATT
TTGACAAGGTTTTGAAATAAAACAAACAATGTCTTTTACATTAATATTCTTTCTCCATTTAAGTT
ATAATTTATTC
Found at i:3115029 original size:13 final size:13
Alignment explanation
Indices: 3115013--3115051 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
3115003 TTTTTAAGTA
3115013 ATTTTTTAAATTT
1 ATTTTTTAAATTT
*
3115026 ATTTTCTAAATGTT
1 ATTTTTTAAAT-TT
3115040 A-TTTTTAAATTT
1 ATTTTTTAAATTT
3115052 CTAAACCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 2 0.09
13 18 0.78
14 3 0.13
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (13 bp):
ATTTTTTAAATTT
Found at i:3115204 original size:51 final size:50
Alignment explanation
Indices: 3115040--3115204 Score: 113
Period size: 51 Copynumber: 3.1 Consensus size: 50
3115030 TCTAAATGTT
* * * *
3115040 ATTTTTAAATTTCTAAACCTTCTAATATATTGGTAATG-TTTTATTTCT--AT
1 ATTTTTAAATTT-TAAACCTTC-AATATGTTGGTAA-GATTTTTTTTTTAAAA
* * *
3115090 TTTTCTTAAATTTTAAAACATTTCAATATGCTGGT-AGATTTTTTTATTTTCAAAAAA
1 ATTT-TTAAATTTT-AAAC-CTTCAATATGTTGGTAAGA-TTTTTT-TTTT---AAAA
3115147 TCATTTTTAAATTTTAAAGCCTTCAATATGTTGGTAAGATTTTTTTTTTAAAA
1 --ATTTTTAAATTTTAAA-CCTTCAATATGTTGGTAAGATTTTTTTTTTAAAA
3115200 ATTTT
1 ATTTT
3115205 ATTTTATTTT
Statistics
Matches: 90, Mismatches: 10, Indels: 29
0.70 0.08 0.22
Matches are distributed among these distances:
49 1 0.01
50 5 0.06
51 31 0.34
52 6 0.07
53 4 0.04
56 4 0.04
57 23 0.26
58 13 0.14
59 3 0.03
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.52
Consensus pattern (50 bp):
ATTTTTAAATTTTAAACCTTCAATATGTTGGTAAGATTTTTTTTTTAAAA
Found at i:3115705 original size:112 final size:112
Alignment explanation
Indices: 3115476--3115687 Score: 250
Period size: 112 Copynumber: 1.9 Consensus size: 112
3115466 TTTTTATGTA
* * * *
3115476 TTTTTTTTATTTTCCAAAAGTTATTTTAAATTTTTAAACCTTCTAATATGTTGGTAATGTTTTAA
1 TTTTTTTTATTTACCAAAAATCATTTTAAATTTTTAAACCTTCTAATATGTTAGTAATGTTTTAA
* *
3115541 TTCTATTTTTCATAAATTTTAAAACCTTTCAATATGTTAGTAATTAAG
66 TTCAATTTTT-ATAAATTTTAAAACCTTCCAATATGTTAGTAATTAAG
* *
3115589 -TTTTTTTATTTACCAAAAATCATTTTTAAATTTTTAAACTTTC-AATATGTTAGTAAGATTTTT
1 TTTTTTTTATTTACCAAAAATCA-TTTTAAATTTTTAAACCTTCTAATATGTTAGT-A-A--TGT
* * *
3115652 TTTATTTCAATTTTT-TTAATTTTAAAATCTTCCAAT
61 TTTAATTCAATTTTTATAAATTTTAAAACCTTCCAAT
3115688 TTTTTAATAA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
112 29 0.35
113 20 0.24
114 19 0.23
116 15 0.18
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (112 bp):
TTTTTTTTATTTACCAAAAATCATTTTAAATTTTTAAACCTTCTAATATGTTAGTAATGTTTTAA
TTCAATTTTTATAAATTTTAAAACCTTCCAATATGTTAGTAATTAAG
Found at i:3116111 original size:57 final size:54
Alignment explanation
Indices: 3116041--3116176 Score: 139
Period size: 57 Copynumber: 2.4 Consensus size: 54
3116031 TAAAACCTTT
* * * *
3116041 TTCAATATGTTGGTAGGCTTTTTTATTTTTCAAAA-ATCATTTTTAAATTCTAAAATC
1 TTCAATATATTGGTAAGATTTTTT-TATTTCAAAATAT-ATTTTTAAATT-TAAAA-C
*
3116098 TTCAATATATTGGTAAGATTTTTTTATTTCAAAATTATTTTTTTAAATTTAAAAC
1 TTCAATATATTGGTAAGATTTTTTTATTTCAAAA-TATATTTTTAAATTTAAAAC
* *
3116153 TTCCCAATATTTTGGTAAGGTTTT
1 TT--CAATATATTGGTAAGATTTT
3116177 AAAATAAAAC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
55 3 0.04
56 14 0.21
57 49 0.72
58 2 0.03
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.51
Consensus pattern (54 bp):
TTCAATATATTGGTAAGATTTTTTTATTTCAAAATATATTTTTAAATTTAAAAC
Found at i:3116615 original size:57 final size:55
Alignment explanation
Indices: 3116428--3116626 Score: 176
Period size: 57 Copynumber: 3.6 Consensus size: 55
3116418 TTTATTTATT
* * *
3116428 TTTCAAAAGTCATTTTTAAATTTTTAAATCTTCTAATATGTTGGT-A-A-TGTTTTA
1 TTTCAAAA-TCATTTTTAAATTTTAAAACCTTC-AATATGTTGGTAAGATTTTTTTA
* * * * * * *
3116482 TTTC--TAT-TTTTCTTAAATTTTAAAACCATTCAATGTGCTGATAAGTTTTTTTTTT
1 TTTCAAAATCATTT-TTAAATTTTAAAACC-TTCAATATGTTGGTAAG-ATTTTTTTA
*
3116537 TTTCAAAAATCATTTTTAAATTTTAAAATCTTCAATATGTTGGTAAGATTTTTTTA
1 TTTC-AAAATCATTTTTAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTA
*
3116593 TTTCAAAATTATTTTTAAAAATTTTAAAACCTTC
1 TTTCAAAATCATTTTT--AAATTTTAAAACCTTC
3116627 CAACATTTTG
Statistics
Matches: 113, Mismatches: 20, Indels: 21
0.73 0.13 0.14
Matches are distributed among these distances:
50 3 0.03
51 22 0.19
52 5 0.04
54 4 0.04
55 20 0.18
56 11 0.10
57 29 0.26
58 16 0.14
59 3 0.03
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.52
Consensus pattern (55 bp):
TTTCAAAATCATTTTTAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTA
Found at i:3116647 original size:57 final size:55
Alignment explanation
Indices: 3116529--3116637 Score: 130
Period size: 57 Copynumber: 1.9 Consensus size: 55
3116519 CTGATAAGTT
* * *
3116529 TTTTTTTTTTTCAAAAATCATTTTTAAATTTTAAAATCTTCAATATGTTGGTAAGA
1 TTTTTTTATTTCAAAAATCATTTTTAAATTTTAAAACCTTCAACATGTTGG-AAGA
* *
3116585 TTTTTTTATTTC-AAAATTATTTTTAAAAATTTTAAAACCTTCCAACATTTTGG
1 TTTTTTTATTTCAAAAATCATTTTT--AAATTTTAAAACCTT-CAACATGTTGG
3116638 CGATATTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
55 11 0.24
56 11 0.24
57 14 0.31
58 9 0.20
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (55 bp):
TTTTTTTATTTCAAAAATCATTTTTAAATTTTAAAACCTTCAACATGTTGGAAGA
Found at i:3116728 original size:470 final size:468
Alignment explanation
Indices: 3114683--3117087 Score: 2885
Period size: 470 Copynumber: 5.1 Consensus size: 468
3114673 CTATTTTTCA
* * *
3114683 TAAATTTTAAAAACTTCAATATGTTGGTAA-TTTTTTTTATTTAAAAATTATTTTTAAAATTTTA
1 TAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTATTTCAAAATTATTTTTAAAATTTTA
* * ** *
3114747 AAACCTTCTAATATTTTGGTGAGGTTTTCCAATAAAACAAAT-GATATCTTTTACATTAATGTTC
66 AAA-CTTCCAATATTTTGGTGAGATTTTTAAATAAAAC-AATCGATGTCTTTTACATTAATGTTC
* * * * *
3114811 TTTTTTTCATTCAAGCTATACTTTATTCTAATCTTTTATTCCAAGTTGAATTATACCTTTCCTAC
129 TTTTTCT-ATTTAAGTTATACTTTATTCTAATC-TTTATTCCATGTTGAATTATACCTTTACTAC
* *
3114876 CAGTTAGGCTAAACCTTTGCATTTTGGTGCCTCAACAAGTAATTCATTATGCTTCAAGTTTGAAG
192 TAGTTAGGTTAAACCTTTGCATTTTGGTGCCTCAACAAGTAATTCATTATGCTTCAAGTTTGAAG
* * **
3114941 GTTGATGAGGTGCATCATACAAAATAAGCATTGACATTAGAAAACAAATATTGCAAAAATCATTT
257 GTTGATGAGGTGCATCATACAAAGTAAGCATTGACCTTAGAAAACAAACCTTGCAAAAATCATTT
* * * *
3115006 TTAAGTAATTTTTTAAATTTA-TTTTCTAAATGTTATTTTTAAATTTCTAAACCTTCTAATATAT
322 TTATGTAATTTTTT-TATTTATTTTTC-AAAAGTTATTTTTAAATTTCTAAACCTTCTAATATGT
* * *
3115070 TGGTAATGTTTTATTTCTATTTTTCTTAAATTTTAAAACATTTCAATATGCTGGT-AGATTTTTT
385 TGGTAATGTTTTATTTCTATTTTTCTTAAATTTTAAAACCTTTCAATATGTTGGTAAGTTTTTTT
*
3115134 TATTTTCAAAAAATCATTTT
450 TTTTTTC-AAAAATCATTTT
* * *
3115154 TAAATTTTAAAGCCTTCAATATGTTGGTAAGATTTTTTT-TTTAAAAATT-TTATTT--TATTTT
1 TAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTATTTCAAAATTATT-TTTAAAATTTT
* * * * *
3115215 AGAAACGTCCAATATTTTGGTGAGATTTTTCAATAAAACAATTGATATCTTTTATATTAATGTTC
65 A-AAACTTCCAATATTTTGGTGAGATTTTTAAATAAAACAATCGATGTCTTTTACATTAATGTTC
* * * ** *
3115280 TTTTTCTATTTAAGTTATACTTTTATTTTAATTTTTATTCTACATTGAATTATACCTTTGC-AC-
129 TTTTTCTATTTAAGTTATAC-TTTATTCTAATCTTTATTCCATGTTGAATTATACCTTTACTACT
* * *
3115343 ---TAGGTTAAACATTTGCATTTTGGTACCTTAACAAGTAATTCATTATGCTTCAAGTTTGAAGG
193 AGTTAGGTTAAACCTTTGCATTTTGGTGCCTCAACAAGTAATTCATTATGCTTCAAGTTTGAAGG
* * * * * *
3115405 TTGATGAGATGCATCGTACAAAGTAACCATTGACCTCAGAAAACAAACCTTACAAAAGT-AGTTT
258 TTGATGAGGTGCATCATACAAAGTAAGCATTGACCTTAGAAAACAAACCTTGCAAAAATCA-TTT
* *
3115469 TTATGT-A--TTTTT-TTTATTTTCCAAAAGTTA-TTTTAAATTTTTAAACCTTCTAATATGTTG
322 TTATGTAATTTTTTTATTTATTTTTCAAAAGTTATTTTTAAATTTCTAAACCTTCTAATATGTTG
* * *
3115529 GTAATGTTTTAATTCTATTTTTCATAAATTTTAAAACCTTTCAATATGTTAGTAA-TTAAGTTTT
387 GTAATGTTTTATTTCTATTTTTCTTAAATTTTAAAACCTTTCAATATGTTGGTAAGTT---TTTT
*
3115593 TTTATTTACCAAAAATCATTTT
449 TTT-TTT-TCAAAAATCATTTT
* * *
3115615 TAAATTTTTAAACTTTCAATATGTTAGTAAGATTTTTTTTATTTC--AATT-TTTTT--AATTTT
1 TAAATTTTAAAACCTTCAATATGTTGGTAAGA-TTTTTTTATTTCAAAATTATTTTTAAAATTTT
* ** * * * * * * *
3115675 AAAATCTTCCAATTTTTTAATAAGGTTTTTTAAATAAAATAACCAAATGTCTTTTGCATCAATGT
65 AAAA-CTTCCAATATTTTGGTGA-GATTTTTAAATAAAACAATC-GATGTCTTTTACATTAATGT
* * * * *
3115740 TCTTTTTCTGTTTAAGTTATACTTTATTCTAATCTTTATTCCATGTT-AAGATATGCCTTAATTA
127 TCTTTTTCTATTTAAGTTATACTTTATTCTAATCTTTATTCCATGTTGAA-TTATACCTTTACTA
* * * * **
3115804 CTAGCTAGGTTAAACCTTTGCATTTTTGTACCCCAACAAGTAATTCATTATGCTTCAAGTTCAAA
191 CTAGTTAGGTTAAACCTTTGCATTTTGGTGCCTCAACAAGTAATTCATTATGCTTCAAGTTTGAA
* * * * * *
3115869 GATTGATAAGGTGCATCATACAAAAGGAAGCATTGATCTTAGAAAACAAACTTTACAAAAATCAT
256 GGTTGATGAGGTGCATCATAC-AAAGTAAGCATTGACCTTAGAAAACAAACCTTGCAAAAATCAT
* * ** *
3115934 TTTTATGTAAATTTTTTATTTA-TCTTCAAAAGTTATTTTTAAATTTCTAAATGATT-GAATATG
320 TTTTATGTAATTTTTTTATTTATTTTTCAAAAGTTATTTTTAAATTTCTAAA-CCTTCTAATATG
* * * * *
3115997 TTGGTAATGTTTTATTCCCATTTTTCTTATATTTTAAAACCTTTTTCAATATGTTGGTAGGCTTT
384 TTGGTAATGTTTTATTTCTATTTTTCTTAAATTTTAAAACC--TTTCAATATGTTGGTAAGTTTT
*
3116062 TTTATTTTTCAAAAATCATTTT
447 TTTTTTTTTCAAAAATCATTTT
* * * *
3116084 TAAATTCTAAAATCTTCAATATATTGGTAAGATTTTTTTATTTCAAAATTATTTTTTTAAA-TTT
1 TAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTATTTCAAAATTA-TTTTTAAAATTTT
* * * * *
3116148 AAAACTTCCCAATATTTTGGTAAGGTTTTAAAATAAAACAACCAATGTCTTTTACATTAATGTTC
65 AAAACTT-CCAATATTTTGGTGAGATTTTTAAATAAAACAATCGATGTCTTTTACATTAATGTTC
* * * * * * *
3116213 TTTTTTTGTTTAAGTTACATTTTATTGTAATCTTTATTACATGTTGAATTATACCTTTACAACTA
129 TTTTTCTATTTAAGTTATACTTTATTCTAATCTTTATTCCATGTTGAATTATACCTTTACTACTA
**
3116278 GTTAGGTTAAACCTTTGCATTTTGGTGCCTTGACAAGTAATTCATTATGCTTCAAGTTTGACA-G
194 GTTAGGTTAAACCTTTGCATTTTGGTGCCTCAACAAGTAATTCATTATGCTTCAAGTTTGA-AGG
* * * *
3116342 TTGATGAGGTGTATCATCCAAAGTAAGCATTGACCTCAGAAAACAAATCTTGCAAAAATCATTTT
258 TTGATGAGGTGCATCATACAAAGTAAGCATTGACCTTAGAAAACAAACCTTGCAAAAATCATTTT
* * *
3116407 TATGTAATTTTTTTATTTATTTTTCAAAAGTCATTTTTAAATTTTTAAATCTTCTAATATGTTGG
323 TATGTAATTTTTTTATTTATTTTTCAAAAGTTATTTTTAAATTTCTAAACCTTCTAATATGTTGG
* * * *
3116472 TAATGTTTTATTTCTATTTTTCTTAAATTTTAAAACCATTCAATGTGCTGATAAGTTTTTTTTTT
388 TAATGTTTTATTTCTATTTTTCTTAAATTTTAAAACCTTTCAATATGTTGGTAAGTTTTTTTTTT
3116537 TTTCAAAAATCATTTT
453 TTTCAAAAATCATTTT
*
3116553 TAAATTTTAAAATCTTCAATATGTTGGTAAGATTTTTTTATTTCAAAATTATTTTTAAAAATTTT
1 TAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTATTTCAAAATTATTTTT-AAAATTTT
* * * * *
3116618 AAAACCTTCCAACATTTTGGCGATATTTTTAAACAAAACAATCGATGTCTTTTACATTAATATTC
65 AAAA-CTTCCAATATTTTGGTGAGATTTTTAAATAAAACAATCGATGTCTTTTACATTAATGTTC
* * *
3116683 TTTTTCCATTTAAGTTATACTTTATTCTATTCTTTATTCCATGTTGAATTACACCTTTACTACTA
129 TTTTTCTATTTAAGTTATACTTTATTCTAATCTTTATTCCATGTTGAATTATACCTTTACTACTA
* * * *
3116748 GTTAGGTTAAACATTTGCACTTTT-ATGCCTCAACAAGTAATTCATTATGCTTCAAGATTAAAGG
194 GTTAGGTTAAACCTTTGCA-TTTTGGTGCCTCAACAAGTAATTCATTATGCTTCAAGTTTGAAGG
* * * *
3116812 TTGATGAGGTGCATCATACAAAGTAAACATTGACCTTATAAAACAAACCTTGCAAAAGTCATTTG
258 TTGATGAGGTGCATCATACAAAGTAAGCATTGACCTTAGAAAACAAACCTTGCAAAAATCATTTT
* * * *
3116877 TATGT-ATTTTTTTAATTTATTTTCCAAAAGTAATTTTTAAATTTCTAAACCTTCTAACATATTG
323 TATGTAATTTTTTT-ATTTATTTTTCAAAAGTTATTTTTAAATTTCTAAACCTTCTAATATGTTG
* * * *
3116941 GTATTGTTTTATTTTTATTTTTCTTAAATTTAAAAACTTTTCAATATGTTGGTAAGTTTTTTTTT
387 GTAATGTTTTATTTCTATTTTTCTTAAATTTTAAAACCTTTCAATATGTTGGTAAGTTTTTTTTT
*
3117006 TTTTCAAAAATCAATTT
452 TTTTCAAAAATCATTTT
* * *
3117023 TAAATTTTAAAACCTTCAATATGTTCGTAATATTTTTTTATTTCACAATTATTGTTTTAAAATTT
1 TAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTATTTCAAAATTA-T-TTTTAAAATTT
3117088 CTTAAATTAA
Statistics
Matches: 1655, Mismatches: 225, Indels: 108
0.83 0.11 0.05
Matches are distributed among these distances:
457 77 0.05
458 12 0.01
459 7 0.00
460 34 0.02
461 91 0.05
462 48 0.03
463 118 0.07
466 71 0.04
467 45 0.03
468 57 0.03
469 210 0.13
470 474 0.29
471 333 0.20
472 41 0.02
473 34 0.02
474 3 0.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (468 bp):
TAAATTTTAAAACCTTCAATATGTTGGTAAGATTTTTTTATTTCAAAATTATTTTTAAAATTTTA
AAACTTCCAATATTTTGGTGAGATTTTTAAATAAAACAATCGATGTCTTTTACATTAATGTTCTT
TTTCTATTTAAGTTATACTTTATTCTAATCTTTATTCCATGTTGAATTATACCTTTACTACTAGT
TAGGTTAAACCTTTGCATTTTGGTGCCTCAACAAGTAATTCATTATGCTTCAAGTTTGAAGGTTG
ATGAGGTGCATCATACAAAGTAAGCATTGACCTTAGAAAACAAACCTTGCAAAAATCATTTTTAT
GTAATTTTTTTATTTATTTTTCAAAAGTTATTTTTAAATTTCTAAACCTTCTAATATGTTGGTAA
TGTTTTATTTCTATTTTTCTTAAATTTTAAAACCTTTCAATATGTTGGTAAGTTTTTTTTTTTTT
CAAAAATCATTTT
Found at i:3122712 original size:23 final size:23
Alignment explanation
Indices: 3122685--3122730 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
3122675 TCAAATTCAA
*
3122685 AGCAAAATGTATGATACTACTTT
1 AGCAAAATGTATAATACTACTTT
*
3122708 AGCAAAATGTATAATATTACTTT
1 AGCAAAATGTATAATACTACTTT
3122731 TACTTGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (23 bp):
AGCAAAATGTATAATACTACTTT
Done.