Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 20 of 121
Found at i:3632707 original size:17 final size:17
Alignment explanation
Indices: 3632685--3632719 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
3632675 TAAAATTATC
3632685 AAATTAAAATAATATAA
1 AAATTAAAATAATATAA
* *
3632702 AAATTAAATTTATATAA
1 AAATTAAAATAATATAA
3632719 A
1 A
3632720 TTACAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATTAAAATAATATAA
Found at i:3639487 original size:16 final size:16
Alignment explanation
Indices: 3639463--3639496 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3639453 TTTAAAATTC
*
3639463 ATTTTATTATTTATTT
1 ATTTAATTATTTATTT
3639479 ATTTAATTATTTATTT
1 ATTTAATTATTTATTT
3639495 AT
1 AT
3639497 CTTTTCAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTAATTATTTATTT
Found at i:3640497 original size:17 final size:17
Alignment explanation
Indices: 3640463--3640503 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
3640453 TAACGGCTGG
3640463 TTTA-TTTATCTATCTA
1 TTTATTTTATCTATCTA
*
3640479 TTTTATTTTATC-ATTTA
1 -TTTATTTTATCTATCTA
3640496 TTTATTTT
1 TTTATTTT
3640504 TGAAATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 8 0.36
17 8 0.36
18 6 0.27
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTATTTTATCTATCTA
Found at i:3640559 original size:22 final size:23
Alignment explanation
Indices: 3640528--3640571 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
3640518 TGGTTAATTT
3640528 TAAAAAAAAATTATAA-AAAATA
1 TAAAAAAAAATTATAATAAAATA
* *
3640550 TAAAATAAAATTTTAATAAAAT
1 TAAAAAAAAATTATAATAAAAT
3640572 TTGAGAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAAAAAAATTATAATAAAATA
Found at i:3641177 original size:53 final size:53
Alignment explanation
Indices: 3641117--3641221 Score: 151
Period size: 53 Copynumber: 2.0 Consensus size: 53
3641107 TCTAAAAAAA
*
3641117 ATATTTCTAAATTTAA-CC-AACATCGTAAAAAATTTAGAAATGAAACTTGTAAG
1 ATATTTCTAAA-TTAAGCCTAA-ATCGTAAAAAATTTAGAAATAAAACTTGTAAG
* *
3641170 ATATTTCTAAATTAAGCCTAAATGGTGAAAAATTTAGAAATAAAACTTGTAA
1 ATATTTCTAAATTAAGCCTAAATCGTAAAAAATTTAGAAATAAAACTTGTAA
3641222 AATAAAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
52 4 0.09
53 41 0.87
54 2 0.04
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.32
Consensus pattern (53 bp):
ATATTTCTAAATTAAGCCTAAATCGTAAAAAATTTAGAAATAAAACTTGTAAG
Found at i:3641664 original size:32 final size:32
Alignment explanation
Indices: 3641628--3641750 Score: 106
Period size: 32 Copynumber: 3.9 Consensus size: 32
3641618 ATCAACCTTA
* *
3641628 GTTCAGTCTGGTCATTTTTATTTTCGATTATG
1 GTTCAGTCTAGTCATTTTTATTTTCGACTATG
* * *
3641660 GTTCAGTCTAATCACTTTT-TTTTGGACCT-TG
1 GTTCAGTCTAGTCATTTTTATTTTCGA-CTATG
** * ** *
3641691 GTTCAGTCCGGTCATCTTTATTTTTTACCATG
1 GTTCAGTCTAGTCATTTTTATTTTCGACTATG
* *
3641723 GTTCAATCTAGTCATTTTCATTTTCGAC
1 GTTCAGTCTAGTCATTTTTATTTTCGAC
3641751 CTTGTCTTAA
Statistics
Matches: 68, Mismatches: 20, Indels: 6
0.72 0.21 0.06
Matches are distributed among these distances:
31 23 0.34
32 45 0.66
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (32 bp):
GTTCAGTCTAGTCATTTTTATTTTCGACTATG
Found at i:3641724 original size:63 final size:64
Alignment explanation
Indices: 3641562--3641754 Score: 187
Period size: 63 Copynumber: 3.0 Consensus size: 64
3641552 ATTTTTTATT
* * * * * * *
3641562 TTGGTTTAGTCCAGT-ATCTTTATTTTTTACCATAGTTTAGT-TCGATCACTTTTATTATCAACC
1 TTGGTTCAGTCCGGTCATCTTTATTTTTTACCATGGTTCAGTCT-AATCACTTTTATTTTCGACC
* * * ** ** *
3641625 TTAGTTCAGTCTGGTCATTTTTATTTTCGATTATGGTTCAGTCTAATCACTTTT-TTTTGGACC
1 TTGGTTCAGTCCGGTCATCTTTATTTTTTACCATGGTTCAGTCTAATCACTTTTATTTTCGACC
* *
3641688 TTGGTTCAGTCCGGTCATCTTTATTTTTTACCATGGTTCAATCTAGTCA-TTTTCATTTTCGACC
1 TTGGTTCAGTCCGGTCATCTTTATTTTTTACCATGGTTCAGTCTAATCACTTTT-ATTTTCGACC
3641752 TTG
1 TTG
3641755 TCTTAACCTA
Statistics
Matches: 101, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
62 4 0.04
63 57 0.56
64 39 0.39
65 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (64 bp):
TTGGTTCAGTCCGGTCATCTTTATTTTTTACCATGGTTCAGTCTAATCACTTTTATTTTCGACC
Found at i:3641896 original size:32 final size:33
Alignment explanation
Indices: 3641855--3641936 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
3641845 TCTTTTCAAT
* * * * *
3641855 TTCAACTAAGACCAAGTCATTTTA-TTTTTGAT
1 TTCAGCTAAGACCAAGTCATATCATTTTTTAAC
* *
3641887 TTTAGCTAAGTCCAAGTCATATCATTTTTTAAC
1 TTCAGCTAAGACCAAGTCATATCATTTTTTAAC
3641920 TTCAGCTAAGACCAAGT
1 TTCAGCTAAGACCAAGT
3641937 TTTATTTTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
32 19 0.47
33 21 0.52
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (33 bp):
TTCAGCTAAGACCAAGTCATATCATTTTTTAAC
Found at i:3650073 original size:21 final size:21
Alignment explanation
Indices: 3650047--3650090 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
3650037 TAATCCTTTC
* *
3650047 TTTTTTTTCAC-TTTTTCATT
1 TTTTTTTTTACATTTTACATT
3650067 TTTTTTTTTACATTTTACATT
1 TTTTTTTTTACATTTTACATT
3650088 TTT
1 TTT
3650091 AAAGAAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTTTTTTACATTTTACATT
Found at i:3652987 original size:45 final size:46
Alignment explanation
Indices: 3652938--3653045 Score: 103
Period size: 45 Copynumber: 2.3 Consensus size: 46
3652928 TGAGGTTTGA
** * *
3652938 GGTTTTGATTTAAGGGTTT-GCATTTTAGGGATTTTGGATTTAG-GG
1 GGTTTTGATTTAAGGGTTTAAAAGTTT-GAGATTTTGGATTTAGAGG
* * * *
3652983 GGTTTAGGTTTAAGAGTTTAAAAGTTTGAGATTTTGGATTTTGAGG
1 GGTTTTGATTTAAGGGTTTAAAAGTTTGAGATTTTGGATTTAGAGG
*
3653029 GGTTTTGAATTTTAGGG
1 GGTTTTG-ATTTAAGGG
3653046 GTTTTGGATT
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
45 30 0.62
46 12 0.25
47 6 0.12
ACGTcount: A:0.21, C:0.01, G:0.32, T:0.45
Consensus pattern (46 bp):
GGTTTTGATTTAAGGGTTTAAAAGTTTGAGATTTTGGATTTAGAGG
Found at i:3653040 original size:17 final size:16
Alignment explanation
Indices: 3653014--3653065 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 16
3653004 AAGTTTGAGA
3653014 TTTTGGATTTTGAGGGG
1 TTTTGGATTTT-AGGGG
*
3653031 TTTTGAATTTTAGGGG
1 TTTTGGATTTTAGGGG
3653047 TTTTGGATTTTTAGGGG
1 TTTTGGA-TTTTAGGGG
3653064 TT
1 TT
3653066 CTACAAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.34
17 21 0.66
ACGTcount: A:0.13, C:0.00, G:0.35, T:0.52
Consensus pattern (16 bp):
TTTTGGATTTTAGGGG
Found at i:3654564 original size:27 final size:28
Alignment explanation
Indices: 3654525--3654581 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
3654515 TTTTGTTTCT
* *
3654525 TTTTTTTTGTTTATTAATAATTATT-TTA
1 TTTTATTTGTTTATTAA-AAATATTATTA
3654553 TTTTATTT-TTTATTAAAAATATTATTA
1 TTTTATTTGTTTATTAAAAATATTATTA
3654580 TT
1 TT
3654582 ATTAAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.23
27 13 0.50
28 7 0.27
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (28 bp):
TTTTATTTGTTTATTAAAAATATTATTA
Found at i:3654882 original size:21 final size:21
Alignment explanation
Indices: 3654826--3654882 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
3654816 CCAAAGGACA
*
3654826 TACAGAATT-ACTCAGAGGTCT
1 TACAGAATTGACT-GGAGGTCT
*
3654847 TA-AAAATCATGACTGGAGGTCT
1 TACAGAAT--TGACTGGAGGTCT
3654869 TACAGAATTGACTG
1 TACAGAATTGACTG
3654883 AGATAACATC
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
20 4 0.14
21 8 0.28
22 10 0.34
23 7 0.24
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (21 bp):
TACAGAATTGACTGGAGGTCT
Found at i:3655001 original size:23 final size:23
Alignment explanation
Indices: 3654944--3655030 Score: 81
Period size: 23 Copynumber: 3.9 Consensus size: 23
3654934 AGCGAAATTC
* *
3654944 TGTCTGGAGGTCTTA-AAAATCA
1 TGTCCGGAGGTCTTACAGAATCA
* * * *
3654966 TGCCCGAATGTCTTATAGAATCA
1 TGTCCGGAGGTCTTACAGAATCA
*
3654989 TGTTCGGAGGTCTTACAGAAT--
1 TGTCCGGAGGTCTTACAGAATCA
*
3655010 TATCCGGAGGTCTTACAGAAT
1 TGTCCGGAGGTCTTACAGAAT
3655031 TGACTAGGAT
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
21 19 0.37
22 11 0.21
23 22 0.42
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (23 bp):
TGTCCGGAGGTCTTACAGAATCA
Found at i:3655217 original size:110 final size:110
Alignment explanation
Indices: 3654993--3655231 Score: 299
Period size: 110 Copynumber: 2.2 Consensus size: 110
3654983 GAATCATGTT
* **
3654993 CGGAGGTCTTACAGAAT--TATCCGGAGGTCTTACAGAATTGACTAGGATAACACCGTAAGTCGA
1 CGGAGGTCTTA-AGAATCATGTCCGGAGGTCTTACAGAATTGACTAGGATAACACCACAAGTCGA
* * * * *
3655056 AAGATAAAGAATCGATCGGGATAATATCTCGAATCGAAATTATGTC
65 AAAATAAAGAATCGATCGAGATAACACCTCGAATCGAAATTATGAC
* * *
3655102 CGGAGGTCTTATAGAATCATGTCTGGAGGTCTTACAGCATTGACTGGGATAACACCACAAGTC-A
1 CGGAGGTCTTA-AGAATCATGTCCGGAGGTCTTACAGAATTGACTAGGATAACACCACAAGTCGA
3655166 AAAATAAAGAATCGATCGAGATAACACCGT-GAATCGAAATTAT-AC
65 AAAATAAAGAATCGATCGAGATAACACC-TCGAATCGAAATTATGAC
*
3655211 CTGGAGGTCTTAAAAATCATG
1 C-GGAGGTCTTAAGAATCATG
3655232 CACGAAAATC
Statistics
Matches: 113, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
109 26 0.23
110 48 0.42
111 39 0.35
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (110 bp):
CGGAGGTCTTAAGAATCATGTCCGGAGGTCTTACAGAATTGACTAGGATAACACCACAAGTCGAA
AAATAAAGAATCGATCGAGATAACACCTCGAATCGAAATTATGAC
Found at i:3655265 original size:21 final size:21
Alignment explanation
Indices: 3655240--3655295 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
3655230 TGCACGAAAA
**
3655240 TCTTACAGAATTGTTCGGAGG
1 TCTTACAGAATTGCCCGGAGG
*
3655261 TCTTAGA-AATCATGCCCGGAGG
1 TCTTACAGAAT--TGCCCGGAGG
3655283 TCTTACAGAATTG
1 TCTTACAGAATTG
3655296 ACTGGGATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 3 0.11
21 8 0.29
22 14 0.50
23 3 0.11
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (21 bp):
TCTTACAGAATTGCCCGGAGG
Found at i:3655274 original size:43 final size:43
Alignment explanation
Indices: 3655213--3655295 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
3655203 AATTATACCT
3655213 GGAGGTCTTAAAAATCATGCACGAAAATCTTACAGAATTGTTC
1 GGAGGTCTTAAAAATCATGCACGAAAATCTTACAGAATTGTTC
* * * **
3655256 GGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATTG
1 GGAGGTCTTAAAAATCATGCACGAAAATCTTACAGAATTG
3655296 ACTGGGATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (43 bp):
GGAGGTCTTAAAAATCATGCACGAAAATCTTACAGAATTGTTC
Found at i:3655298 original size:152 final size:154
Alignment explanation
Indices: 3655102--3655380 Score: 418
Period size: 152 Copynumber: 1.8 Consensus size: 154
3655092 AAATTATGTC
* * * *
3655102 CGGAGGTCTTATAGAATCATGTCTGGAGGTCTTACAGCATTGACTGGGATAACACCACAAGTCAA
1 CGGAGGTCTTAGAGAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCACAAGTCAA
* * * *
3655167 AAATAAAGAATCGATCGAGATAACACCGTGAATCGAAATTATACCTGGAGGTCTTA-AAAATCAT
66 AAATAAAGAATCGATCGAGACAACACCGCGAATCAAAATTATACCCGGAGGTCTTACAAAATCAT
3655231 GCACGAAAATCTTACAGAATTGTT
131 GCACGAAAATCTTACAGAATTGTT
** *
3655255 CGGAGGTCTTAGA-AATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTTAA
1 CGGAGGTCTTAGAGAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCACAAGTCAA
* * *
3655319 AAATAAAGAATCGATCGGGACAATACCGCGAATCAAAATTATACCCGGAGGTTTTACAAAAT
66 AAATAAAGAATCGATCGAGACAACACCGCGAATCAAAATTATACCCGGAGGTCTTACAAAAT
3655381 TGATCGAAGG
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
152 94 0.85
153 17 0.15
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (154 bp):
CGGAGGTCTTAGAGAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCACAAGTCAA
AAATAAAGAATCGATCGAGACAACACCGCGAATCAAAATTATACCCGGAGGTCTTACAAAATCAT
GCACGAAAATCTTACAGAATTGTT
Found at i:3655459 original size:260 final size:260
Alignment explanation
Indices: 3654840--3655512 Score: 827
Period size: 260 Copynumber: 2.6 Consensus size: 260
3654830 GAATTACTCA
* * *
3654840 GAGGTCTTA-AAAATCATGACTGGAGGTCTTACAGAATTGACTGAGATAACATCGTAAGTCAAAA
1 GAGGTCTTACAAAAT-ATGTCTGAAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCAAAA
* * **
3654904 GATAAAGAATCGATCGAGATAACACCGCGAAGCGAAATTCTGTCTGGAGGTCTTAAAAATCATGC
65 -ATAAAGAATCGATCGAGATAACACCGTGAATCGAAATT-TACCTGGAGGTCTTAAAAATCATGC
* * * *
3654969 CCGAATGTCTTATAGAATCATGTTCGGAGGTCTTACAGAATTATCCGGAGGTCTTACAGAATTGA
128 ACGAAAGTCTTACAGAAT--TGTTCGGAGGTCTTACAGAATCATCCGGAGGTCTTACAGAATTGA
* * * * *
3655034 CTAGGATAACACCGTAAGTCGAAAGATAAAGAATCGATCGGGATAATATCTCGAATCGAAATTAT
191 CTAGGATAACACCGTAAGTCGAAAAATAAAGAATCGATCGGGACAATACCGCGAATCAAAATTAT
**
3655099 GTCCG
256 ACCCG
* * * * * **
3655104 GAGGTCTTATAGAATCATGTCTGGAGGTCTTACAGCATTGACTGGGATAACACCACAAGTCAAAA
1 GAGGTCTTACAAAAT-ATGTCTGAAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCAAAA
3655169 ATAAAGAATCGATCGAGATAACACCGTGAATCGAAATTATACCTGGAGGTCTTAAAAATCATGCA
65 ATAAAGAATCGATCGAGATAACACCGTGAATCGAAATT-TACCTGGAGGTCTTAAAAATCATGCA
* *
3655234 CGAAAATCTTACAGAATTGTTCGGAGGTCTTAGA-AATCATGCCCGGAGGTCTTACAGAATTGAC
129 CGAAAGTCTTACAGAATTGTTCGGAGGTCTTACAGAATCAT--CCGGAGGTCTTACAGAATTGAC
* *
3655298 TGGGATAACACCGTAAGT-TAAAAATAAAGAATCGATCGGGACAATACCGCGAATCAAAATTATA
192 TAGGATAACACCGTAAGTCGAAAAATAAAGAATCGATCGGGACAATACCGCGAATCAAAATTATA
3655362 CCCG
257 CCCG
* * *
3655366 GAGGTTTTACAAAAT-TGATC-GAAGGTTTTATAGAATTGACTGAGATAACACCGTAAGTCAAAA
1 GAGGTCTTACAAAATATG-TCTGAAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCAAAA
* * * * * * *
3655429 ATAAAAAATCGATCGGGATAACATCGTGAATC-AAATTTATGCTCGAAGTTCTTAAAAATCATAC
65 ATAAAGAATCGATCGAGATAACACCGTGAATCGAAATTTA-CCT-GGAGGTCTTAAAAATCATGC
* *
3655493 TCGAAGGTCTTACAGAATTG
128 ACGAAAGTCTTACAGAATTG
3655513 GTTGGGATAA
Statistics
Matches: 356, Mismatches: 47, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
258 2 0.01
259 7 0.02
260 101 0.28
261 7 0.02
262 70 0.20
263 39 0.11
264 82 0.23
265 48 0.13
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (260 bp):
GAGGTCTTACAAAATATGTCTGAAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTCAAAAA
TAAAGAATCGATCGAGATAACACCGTGAATCGAAATTTACCTGGAGGTCTTAAAAATCATGCACG
AAAGTCTTACAGAATTGTTCGGAGGTCTTACAGAATCATCCGGAGGTCTTACAGAATTGACTAGG
ATAACACCGTAAGTCGAAAAATAAAGAATCGATCGGGACAATACCGCGAATCAAAATTATACCCG
Found at i:3655531 original size:109 final size:110
Alignment explanation
Indices: 3655261--3655729 Score: 497
Period size: 109 Copynumber: 4.3 Consensus size: 110
3655251 TGTTCGGAGG
* * * *
3655261 TCTTAGAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTTAAAAATAAA
1 TCTTAAAAATCATACCCGAAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAAATAAA
* * * * * * *
3655326 GAATCGATCGGGACAATACCGCGAATCAAAATTATACCCGGAGGT
66 GAATCGATCGGGATAACATCACGAATCAAATTTATGCCCGGAAGT
* * * *
3655371 T-TTACAAAAT--TGA-TCGAAGGTTTTATAGAATTGACTGAGATAACACCGTAAGTCAAAAATA
1 TCTTA-AAAATCAT-ACCCGAAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAAATA
* ** *
3655432 AAAAATCGATCGGGATAACATCGTGAATCAAATTTATGCTC-GAAGT
64 AAGAATCGATCGGGATAACATCACGAATCAAATTTATGCCCGGAAGT
* ** *
3655478 TCTTAAAAATCATACTCGAAGGTCTTACAGAATTGGTTGGGATAACACCGTAAGTCAGAAATAAA
1 TCTTAAAAATCATACCCGAAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAAATAAA
* * *
3655543 GAATCGATCAGGATAATATCACGAATCAAATTTATGCCCGGAGGT
66 GAATCGATCGGGATAACATCACGAATCAAATTTATGCCCGGAAGT
* * * * * *
3655588 T-TTAGAAATCATGCCCGAAGGTCTTACAGAATTGATTGGAATAA-ACTGTAAGTTAAAAAATAA
1 TCTTAAAAATCATACCCGAAGGTCTTACAGAATTGACTGGGATAACACCGTAAG-TCAAAAATAA
* ** *
3655651 AGAATCGATCGGGATAACATCATGAATCGAAA-TTATGCCTAG-AGG
65 AGAATCGATCGGGATAACATCACGAATC-AAATTTATGCCCGGAAGT
* *
3655696 TCTTAAAAATCATACCCGGAGGTCTTGCAGAATT
1 TCTTAAAAATCATACCCGAAGGTCTTACAGAATT
3655730 ACCCGGAGGT
Statistics
Matches: 300, Mismatches: 49, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
107 10 0.03
108 89 0.30
109 188 0.63
110 13 0.04
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (110 bp):
TCTTAAAAATCATACCCGAAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAAATAAA
GAATCGATCGGGATAACATCACGAATCAAATTTATGCCCGGAAGT
Found at i:3655717 original size:22 final size:20
Alignment explanation
Indices: 3655692--3655743 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
3655682 ATTATGCCTA
3655692 GAGGTCTTAAAAATCATACCCG
1 GAGGTCTTAAAAAT--TACCCG
* *
3655714 GAGGTCTTGCAGAATTACCCG
1 GAGGTCTT-AAAAATTACCCG
3655735 GAGGTCTTA
1 GAGGTCTTA
3655744 CAGAATTGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 14 0.54
22 8 0.31
23 4 0.15
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (20 bp):
GAGGTCTTAAAAATTACCCG
Found at i:3655729 original size:218 final size:216
Alignment explanation
Indices: 3655257--3655729 Score: 612
Period size: 217 Copynumber: 2.2 Consensus size: 216
3655247 GAATTGTTCG
* * *
3655257 GAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTTAAAAA
1 GAGGTCTTAAAAATCATACCCGGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAAA
* * *
3655322 TAAAGAATCGATCGGGACAATACCGCGAATCAAAATTATACCCGGAGGTTTTACAAAATTGATCG
66 TAAAGAATCGATCAGGACAATACCACGAATCAAAATTATACCCGGAGGTTTTACAAAATTGACCG
* * *
3655387 AAGGTTTTATAGAATTGACTGAGATAACACCGTAAGTCAAAAATAAAAAATCGATCGGGATAACA
131 AAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTAAAAAATAAAAAATCGATCGGGATAACA
* *
3655452 TCGTGAATCAAATTTATGCTC
196 TCATGAATCAAATTTATGCTA
* * * ** *
3655473 GAAGTTCTTAAAAATCATACTCGAAGGTCTTACAGAATTGGTTGGGATAACACCGTAAGTCAGAA
1 G-AGGTCTTAAAAATCATACCCGGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAA
* * * * * *
3655538 ATAAAGAATCGATCAGGATAATATCACGAATCAAATTTATGCCCGGAGGTTTTA-GAAATCATGC
65 ATAAAGAATCGATCAGGACAATACCACGAATCAAAATTATACCCGGAGGTTTTACAAAAT--TGA
* * *
3655602 CCGAAGGTCTTACAGAATTGATTG-GAATAA-ACTGTAAGTTAAAAAATAAAGAATCGATCGGGA
128 CCGAAGGTCTTACAGAATTGACTGAG-ATAACACCGTAAG-TAAAAAATAAAAAATCGATCGGGA
3655665 TAACATCATGAATCGAAA-TTATGCCTA
191 TAACATCATGAATC-AAATTTATG-CTA
*
3655692 GAGGTCTTAAAAATCATACCCGGAGGTCTTGCAGAATT
1 GAGGTCTTAAAAATCATACCCGGAGGTCTTACAGAATT
3655730 ACCCGGAGGT
Statistics
Matches: 220, Mismatches: 30, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
216 5 0.02
217 110 0.50
218 99 0.45
219 6 0.03
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (216 bp):
GAGGTCTTAAAAATCATACCCGGAGGTCTTACAGAATTGACTGGGATAACACCGTAAGTCAAAAA
TAAAGAATCGATCAGGACAATACCACGAATCAAAATTATACCCGGAGGTTTTACAAAATTGACCG
AAGGTCTTACAGAATTGACTGAGATAACACCGTAAGTAAAAAATAAAAAATCGATCGGGATAACA
TCATGAATCAAATTTATGCTA
Found at i:3655734 original size:21 final size:21
Alignment explanation
Indices: 3655708--3655750 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
3655698 TTAAAAATCA
*
3655708 TACCCGGAGGTCTTGCAGAAT
1 TACCCGGAGGTCTTACAGAAT
3655729 TACCCGGAGGTCTTACAGAAT
1 TACCCGGAGGTCTTACAGAAT
3655750 T
1 T
3655751 GACTGGGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (21 bp):
TACCCGGAGGTCTTACAGAAT
Found at i:3655840 original size:22 final size:23
Alignment explanation
Indices: 3655810--3655875 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 23
3655800 TCGCGAATCG
* *
3655810 AAATTATGCTCGGATGTCTTA-A
1 AAATCATGCTCGGAGGTCTTATA
* *
3655832 AAATCATGCCCGAAGGTCTTATA
1 AAATCATGCTCGGAGGTCTTATA
*
3655855 GAATCATG-TCCGGAGGTCTTA
1 AAATCATGCT-CGGAGGTCTTA
3655876 CAGAATCGAT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
22 17 0.49
23 18 0.51
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (23 bp):
AAATCATGCTCGGAGGTCTTATA
Found at i:3655862 original size:23 final size:22
Alignment explanation
Indices: 3655825--3655882 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
3655815 ATGCTCGGAT
*
3655825 GTCTTAAAAATCATGCCCGAAG
1 GTCTTAAGAATCATGCCCGAAG
* *
3655847 GTCTTATAGAATCATGTCCGGAG
1 GTCTTA-AGAATCATGCCCGAAG
3655870 GTCTTACAGAATC
1 GTCTTA-AGAATC
3655883 GATTGGGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 6 0.19
23 25 0.81
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (22 bp):
GTCTTAAGAATCATGCCCGAAG
Found at i:3655927 original size:132 final size:131
Alignment explanation
Indices: 3655576--3655990 Score: 498
Period size: 130 Copynumber: 3.2 Consensus size: 131
3655566 AATCAAATTT
* * * * * *
3655576 ATGCCCGGAGGTTTTAGA-AATCATGCCCGAAGGTCTTACAGAATTGATTGGAATAAACTGTAAG
1 ATGCCCGAAGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAAACTGCAAG
* ** * *
3655640 TTAAAAAATAAAGAATCGATCGGGATAACATCATGAATCGAAATTATGCCTAGAGGTCTTAAAAA
66 TTAAAAAATAAAAAATCGATCGGGATAACATCGCGAATCGAAATTATGCC-GGAAGTCTTAAAAA
3655705 TC
130 TC
* * * * *
3655707 ATACCCGGAGGTCTTGCAGAAT--TACCCGGAGGTCTTACAGAATTGACTGGGATAACACTGCAA
1 ATGCCCGAAGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAA-ACTGCAA
* * *
3655770 GTT-AGAAATAAAAAATCGATCGGGATAATATCGCGAATCGAAATTATGCTCGGATGTCTTAAAA
65 GTTAAAAAATAAAAAATCGATCGGGATAACATCGCGAATCGAAATTATGC-CGGAAGTCTTAAAA
3655834 ATC
129 ATC
* * *
3655837 ATGCCCGAAGGTCTTATAGAATCATGTCCGGAGGTCTTACAGAATCGATTGGGATAAACTGCAAG
1 ATGCCCGAAGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAAACTGCAAG
* * * * *
3655902 TTAAAAAATAAAAAATTGATTGGGATAACATTGCGAATC-AAATTTATGCCCGAAAGTCTTACAA
66 TTAAAAAATAAAAAATCGATCGGGATAACATCGCGAATCGAAA-TTATG-CCGGAAGTCTTAAAA
3655966 ATC
129 ATC
*
3655969 ATGCTCGAAGGTCTTACAGAAT
1 ATGCCCGAAGGTCTTACAGAAT
3655991 TGACTGAAAT
Statistics
Matches: 242, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
130 102 0.42
131 37 0.15
132 102 0.42
133 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (131 bp):
ATGCCCGAAGGTCTTACAGAATCATGCCCGGAGGTCTTACAGAATTGATTGGGATAAACTGCAAG
TTAAAAAATAAAAAATCGATCGGGATAACATCGCGAATCGAAATTATGCCGGAAGTCTTAAAAAT
C
Found at i:3656172 original size:110 final size:110
Alignment explanation
Indices: 3655864--3656204 Score: 405
Period size: 110 Copynumber: 3.1 Consensus size: 110
3655854 AGAATCATGT
* * * * *
3655864 CCGGAGGTCTTACAGAATCGATTGGGATAA-ACTGCAAGTTAAAAAATAAAAAATTGATTGGGAT
1 CCGGAGGTCTTACAGAATTGATTGAGATAACACTGCAAGTCAAAAGATAAAAAATCGATTGGGAT
* * * *
3655928 AACATTGCGAATCAAATTTATGCCCGAAAGTCTTACAAATCATGC
66 AACATTGCGAATCGAATTTATGCCTGGAAGTCTTACAAATCATAC
* * * * *** *
3655973 TCGAAGGTCTTACAGAATTGACTGAAATAACACCATAAGTCGAAAGATAAAAAATCGATTGGGAT
1 CCGGAGGTCTTACAGAATTGATTGAGATAACACTGCAAGTCAAAAGATAAAAAATCGATTGGGAT
* * *
3656038 AACATTGTGAATCGAATTTATGCCTGGAAGTTTTAGAAATCATAC
66 AACATTGCGAATCGAATTTATGCCTGGAAGTCTTACAAATCATAC
* **
3656083 CCGGAGGTCTTACAGAATTGATTGAGATAACACTGCAAGTCAAAAGATAAAAAATCAATCAGGAT
1 CCGGAGGTCTTACAGAATTGATTGAGATAACACTGCAAGTCAAAAGATAAAAAATCGATTGGGAT
* ** * *
3656148 AACATCGCGAATCGAATTTATGCCTGGTGGTCTTAAAAATCATGC
66 AACATTGCGAATCGAATTTATGCCTGGAAGTCTTACAAATCATAC
**
3656193 CCATAGGTCTTA
1 CCGGAGGTCTTA
3656205 AAAATTATGT
Statistics
Matches: 191, Mismatches: 40, Indels: 1
0.82 0.17 0.00
Matches are distributed among these distances:
109 24 0.13
110 167 0.87
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (110 bp):
CCGGAGGTCTTACAGAATTGATTGAGATAACACTGCAAGTCAAAAGATAAAAAATCGATTGGGAT
AACATTGCGAATCGAATTTATGCCTGGAAGTCTTACAAATCATAC
Found at i:3656241 original size:21 final size:21
Alignment explanation
Indices: 3656176--3656269 Score: 84
Period size: 22 Copynumber: 4.3 Consensus size: 21
3656166 TATGCCTGGT
*
3656176 GGTCTTAAAAATCATGCCC-ATA
1 GGTCTTAAAAATTA-GCCCGA-A
*
3656198 GGTCTTAAAAATTATGTCCGAA
1 GGTCTTAAAAATTA-GCCCGAA
3656220 GGTCTTACAAAATTA-CCCGAA
1 GGTCTTA-AAAATTAGCCCGAA
* * *
3656241 GGTCTTAGAAATCATGCCCGGA
1 GGTCTTAAAAATTA-GCCCGAA
3656263 GGTCTTA
1 GGTCTTA
3656270 CAGAATTGAC
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
20 5 0.08
21 12 0.19
22 37 0.60
23 8 0.13
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (21 bp):
GGTCTTAAAAATTAGCCCGAA
Found at i:3656411 original size:88 final size:88
Alignment explanation
Indices: 3656248--3656447 Score: 301
Period size: 88 Copynumber: 2.3 Consensus size: 88
3656238 GAAGGTCTTA
* ***
3656248 GAAATCATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACTGTAAGTCAAAAGATAAAAAAT
1 GAAATAATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCACAAGTCAAAAGATAAAAAAT
*
3656313 TGATCAAGATAACACCGTGAATC
66 CGATCAAGATAACACCGTGAATC
* * **
3656336 GAATTTATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCACAAGTTGAAAGATAAAAAAT
1 GAAATAATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCACAAGTCAAAAGATAAAAAAT
*
3656401 CGATCGAGATAACACCGTGAATC
66 CGATCAAGATAACACCGTGAATC
*
3656424 GAAATAATGCCCAGAGGTCTTACA
1 GAAATAATGCCCGGAGGTCTTACA
3656448 AATCTCAAAA
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 100 1.00
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (88 bp):
GAAATAATGCCCGGAGGTCTTACAGAATTGACTGGGATAACACCACAAGTCAAAAGATAAAAAAT
CGATCAAGATAACACCGTGAATC
Found at i:3656789 original size:41 final size:41
Alignment explanation
Indices: 3656706--3656793 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
3656696 AGGTTCCCTC
***
3656706 TAAACAGAGACTTTGAAATCTTAATTGAAATTGATTTCTCT
1 TAAACAGAGACTTTGAAATCTTAATTGAAAACAATTTCTCT
* * *
3656747 TAAACAGAGGCTTTGAAATCTTGATTGAAAACAATTTTTCT
1 TAAACAGAGACTTTGAAATCTTAATTGAAAACAATTTCTCT
3656788 TAAACA
1 TAAACA
3656794 AAGATTTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (41 bp):
TAAACAGAGACTTTGAAATCTTAATTGAAAACAATTTCTCT
Found at i:3663899 original size:45 final size:46
Alignment explanation
Indices: 3663850--3663950 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 46
3663840 TTTGAGGTTT
* ** *
3663850 GGGGTTTTGATTTAAGGGTTT-GGATTTTAGAGATTTTGGA-TTTAG
1 GGGGTTTTGATTTAAGAGTTTAAAAGTTT-GAGATTTTGGATTTTAG
* * * *
3663895 GGGGTTTAGGTTTAAGAGTTTAAAAGTTTGGGATTTTGGATTTTGG
1 GGGGTTTTGATTTAAGAGTTTAAAAGTTTGAGATTTTGGATTTTAG
3663941 GGGGTTTTGA
1 GGGGTTTTGA
3663951 ATTTTTAGGG
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
45 28 0.64
46 16 0.36
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.45
Consensus pattern (46 bp):
GGGGTTTTGATTTAAGAGTTTAAAAGTTTGAGATTTTGGATTTTAG
Found at i:3663954 original size:17 final size:17
Alignment explanation
Indices: 3663928--3663982 Score: 83
Period size: 17 Copynumber: 3.2 Consensus size: 17
3663918 AAGTTTGGGA
**
3663928 TTTTGGATTTTGGGGGG
1 TTTTGGATTTTTAGGGG
*
3663945 TTTTGAATTTTTAGGGG
1 TTTTGGATTTTTAGGGG
3663962 TTTTGGATTTTTAGGGG
1 TTTTGGATTTTTAGGGG
3663979 TTTT
1 TTTT
3663983 AAAAAACTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.11, C:0.00, G:0.35, T:0.55
Consensus pattern (17 bp):
TTTTGGATTTTTAGGGG
Found at i:3665488 original size:24 final size:27
Alignment explanation
Indices: 3665442--3665495 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
3665432 TTTGTTTCTT
*
3665442 TTTTTTATTAATAATTATTTTATT-TTA
1 TTTTTTATTAATAA-TATATTATTATTA
3665469 TTTTTTATTAA-AA-ATATTATTATTA
1 TTTTTTATTAATAATATATTATTATTA
3665494 TT
1 TT
3665496 AAAATTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 7 0.28
25 5 0.20
26 2 0.08
27 11 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTTTATTAATAATATATTATTATTA
Found at i:3670355 original size:16 final size:15
Alignment explanation
Indices: 3670334--3670383 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
3670324 TAATATTATC
3670334 TTTTTTA-ATTAATTCA
1 TTTTTTATATT-ATT-A
3670350 TTTTTTATATTATTA
1 TTTTTTATATTATTA
*
3670365 -TTTTTAAATATATTA
1 TTTTTTATAT-TATTA
3670380 TTTT
1 TTTT
3670384 ATGAGTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 8 0.27
15 6 0.20
16 13 0.43
17 3 0.10
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTTATATTATTA
Found at i:3670361 original size:17 final size:14
Alignment explanation
Indices: 3670334--3670383 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 14
3670324 TAATATTATC
3670334 TTTTTTAATTAATTCA
1 TTTTTTAATT-ATT-A
3670350 TTTTTTATATTATTA
1 TTTTTTA-ATTATTA
*
3670365 TTTTTAAATATATTA
1 TTTTTTAAT-TATTA
3670380 TTTT
1 TTTT
3670384 ATGAGTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 2 0.06
15 16 0.52
16 10 0.32
17 3 0.10
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTTAATTATTA
Found at i:3670383 original size:30 final size:30
Alignment explanation
Indices: 3670326--3670383 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
3670316 TTGGTAAATA
*
3670326 ATATTATCTTTTTTAATTAATTCATTTTTT
1 ATATTATCTTTTTTAAATAATTCATTTTTT
3670356 ATATTAT-TATTTTTAAATATATT-ATTTT
1 ATATTATCT-TTTTTAAATA-ATTCATTTT
3670384 ATGAGTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 1 0.04
30 21 0.84
31 3 0.12
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (30 bp):
ATATTATCTTTTTTAAATAATTCATTTTTT
Found at i:3671220 original size:16 final size:16
Alignment explanation
Indices: 3671199--3671235 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
3671189 ACACAGATCA
3671199 TAGCTTTTTCCAATTT
1 TAGCTTTTTCCAATTT
3671215 TAGC-TTTTCCAATTT
1 TAGCTTTTTCCAATTT
3671230 TAGCTT
1 TAGCTT
3671236 AAGCCAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.19, C:0.19, G:0.08, T:0.54
Consensus pattern (16 bp):
TAGCTTTTTCCAATTT
Found at i:3673192 original size:27 final size:27
Alignment explanation
Indices: 3673144--3673195 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
3673134 TTAAAACATA
* **
3673144 ATAAAAAACAAAAAGATTACATTATAT
1 ATAAAAAACAAAAAAAAAACATTATAT
*
3673171 ATAAAAAATAAAAAAAAAACATTAT
1 ATAAAAAACAAAAAAAAAACATTAT
3673196 TTTTAAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (27 bp):
ATAAAAAACAAAAAAAAAACATTATAT
Found at i:3673246 original size:15 final size:16
Alignment explanation
Indices: 3673226--3673259 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
3673216 TTAATTTGAA
3673226 AATATAAAA-AATTAT
1 AATATAAAATAATTAT
3673241 AATATAAAATAATTAT
1 AATATAAAATAATTAT
3673257 AAT
1 AAT
3673260 TTTAAGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATAAAATAATTAT
Found at i:3675983 original size:22 final size:23
Alignment explanation
Indices: 3675948--3675990 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
3675938 TGAGTAAAGA
3675948 TTATATCTTATTA-TTCATATAT
1 TTATATCTTATTATTTCATATAT
3675970 TTATAT-TTATTTATTTCATAT
1 TTATATCTTA-TTATTTCATAT
3675991 TGAAAACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 3 0.16
22 9 0.47
23 7 0.37
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (23 bp):
TTATATCTTATTATTTCATATAT
Found at i:3677328 original size:27 final size:28
Alignment explanation
Indices: 3677285--3677350 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 28
3677275 CACGATTAAT
*
3677285 TTATTTATTTAAAAAAAATTATTT-AAA
1 TTATATATTTAAAAAAAATTATTTAAAA
*
3677312 TTA-ATATTTAAATAAAATTTATTTAAAA
1 TTATATATTTAAA-AAAAATTATTTAAAA
3677340 TTATATATTTA
1 TTATATATTTA
3677351 TAATCTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 8 0.24
27 13 0.38
28 6 0.18
29 7 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (28 bp):
TTATATATTTAAAAAAAATTATTTAAAA
Found at i:3682628 original size:15 final size:14
Alignment explanation
Indices: 3682607--3682644 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
3682597 CCTAAAATGG
3682607 TTTCTTTTTCTTTT
1 TTTCTTTTTCTTTT
3682621 TGTTCTTTTT-TTTT
1 T-TTCTTTTTCTTTT
*
3682635 TTTTTTTTTC
1 TTTCTTTTTC
3682645 CGTGAGAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 7 0.33
14 6 0.29
15 8 0.38
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.87
Consensus pattern (14 bp):
TTTCTTTTTCTTTT
Found at i:3686653 original size:2 final size:2
Alignment explanation
Indices: 3686646--3686676 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3686636 AAAACAAATC
3686646 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3686677 GCGTTTGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3689061 original size:24 final size:24
Alignment explanation
Indices: 3689016--3689064 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
3689006 TCTTCACCCT
*
3689016 CTTCATCATCACCGCCATCCTCTC
1 CTTCATCATCACCGCCAGCCTCTC
*
3689040 CTTCATCTTCACC-CTCAGCCTCTC
1 CTTCATCATCACCGC-CAGCCTCTC
3689064 C
1 C
3689065 ATCACCCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.14, C:0.51, G:0.04, T:0.31
Consensus pattern (24 bp):
CTTCATCATCACCGCCAGCCTCTC
Found at i:3693279 original size:21 final size:22
Alignment explanation
Indices: 3693227--3693269 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
3693217 AAAAATAAAA
3693227 ATAAT-TATAATAATATATTATT
1 ATAATGTA-AATAATATATTATT
3693249 ATAATGTAAATAATTATATTA
1 ATAATGTAAATAA-TATATTA
3693270 GTCATGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
ATAATGTAAATAATATATTATT
Found at i:3693617 original size:224 final size:228
Alignment explanation
Indices: 3693185--3693715 Score: 616
Period size: 224 Copynumber: 2.3 Consensus size: 228
3693175 TATAATAAAC
* *
3693185 TAAAAAAAAGTTATAATAATTATAAATGTAAT-AAAAATAAAAATAATTATAATAATATATTATT
1 TAAAAAAAAGTTATAATAATTATAAATGTAATAAAAAATAAAAATAATCATAAAAATATATTATT
* * * ** *
3693249 ATAATGTAAATAATTATATTAGTCATGTAAAATTTTAATTAATTATTATTTTATAAATATTTAAA
66 GTAATGTAAATAATTATATTAATAATGTAAAATTTTAATTAATTATTATCCTATAAATATATAAA
* * *
3693314 AAATAATTAAAAATTAAAAAATAAATTGATAATGTAAACAATGAAAAAAATAAAATTACTATCAT
131 AAATAACTAAAAATTAAAAAATAAATTGATAATATAAACAATGAAAAAAATAAAAATACTATCAT
*
3693379 TTGACGTAAGTAAAA-A-AT-A-TCTT-AATACAT
196 TTGA-G-AAGTAAAATAGATAAGTCTTGAACACAT
* * * * *
3693409 TAAAAAATA-TTATGATAATTTTAAATATAATAAAAAATAAAAACAATCATAAAAATATATTATT
1 TAAAAAAAAGTTATAATAATTATAAATGTAATAAAAAATAAAAATAATCATAAAAATATATTATT
* *
3693473 GTAAAGTAAATAATTATATTAATAATGTAAAGTTTTAATTAATTATTATCCCTATAAATATATAA
66 GTAATGTAAATAATTATATTAATAATGTAAAATTTTAATTAATTATTAT-CCTATAAATATATAA
* * * ** *
3693538 AATAATAACT-AAAATTGAAAAA-AATTTGATAATATAAACATGTGAGAAATTATGTAAAAATAG
130 AA-AATAACTAAAAATTAAAAAATAAATTGATAATATAAACA-ATGA-AAA--AAATAAAAATAC
* *
3693601 TATCATTTG-G-AGTAAAATAGATAAAAAGTGTTGGACACAT
190 TATCATTTGAGAAGTAAAATAGAT---AAGTCTTGAACACAT
* *
3693641 TAAAAAAAAGTTATAACAATTATAAATGTAATAAAAAATAAAAATAACCATTAAAAATATATTAT
1 TAAAAAAAAGTTATAATAATTATAAATGTAATAAAAAATAAAAATAATCA-TAAAAATATATTAT
3693706 TGTAATGTAA
65 TGTAATGTAA
3693716 TTTATTATTA
Statistics
Matches: 255, Mismatches: 35, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
223 19 0.07
224 104 0.41
225 29 0.11
226 12 0.05
228 17 0.07
230 1 0.00
231 3 0.01
232 13 0.05
233 34 0.13
234 23 0.09
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.35
Consensus pattern (228 bp):
TAAAAAAAAGTTATAATAATTATAAATGTAATAAAAAATAAAAATAATCATAAAAATATATTATT
GTAATGTAAATAATTATATTAATAATGTAAAATTTTAATTAATTATTATCCTATAAATATATAAA
AAATAACTAAAAATTAAAAAATAAATTGATAATATAAACAATGAAAAAAATAAAAATACTATCAT
TTGAGAAGTAAAATAGATAAGTCTTGAACACAT
Found at i:3695865 original size:17 final size:19
Alignment explanation
Indices: 3695845--3695887 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 19
3695835 TAATTAAGTG
*
3695845 TATTTTATTTTTAAAA-A-
1 TATTTTATTTATAAAATAT
3695862 TATTTT-TTTATAAAATAT
1 TATTTTATTTATAAAATAT
3695880 TATTTTAT
1 TATTTTAT
3695888 AATTCACTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.36
17 7 0.32
18 6 0.27
19 1 0.05
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTTTATTTATAAAATAT
Found at i:3695876 original size:15 final size:15
Alignment explanation
Indices: 3695852--3695889 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
3695842 GTGTATTTTA
3695852 TTTTTA-AAAATATT
1 TTTTTATAAAATATT
3695866 TTTTTATAAAATATT
1 TTTTTATAAAATATT
*
3695881 ATTTTATAA
1 TTTTTATAA
3695890 TTCACTGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTTATAAAATATT
Found at i:3697242 original size:31 final size:31
Alignment explanation
Indices: 3697183--3697242 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
3697173 AAAAACTTAC
** *
3697183 TTATTAATGATGTGATATTATTTGATTCACT
1 TTATTAATGAAATGATATCATTTGATTCACT
3697214 TTATTAATGAAATGATATCATCTT-ATTCA
1 TTATTAATGAAATGATATCAT-TTGATTCA
3697243 TTGACAGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 23 0.92
32 2 0.08
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.48
Consensus pattern (31 bp):
TTATTAATGAAATGATATCATTTGATTCACT
Found at i:3700135 original size:34 final size:32
Alignment explanation
Indices: 3700097--3700161 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
3700087 ATATTTTAAT
3700097 TTTTAAATTAAAATTGATAA-AATAAAAAATATTA
1 TTTT-AATTAAAATT--TAATAATAAAAAATATTA
**
3700131 TTTTAATTTTAATTTAATAATAAAAAATATT
1 TTTTAATTAAAATTTAATAATAAAAAATATT
3700162 TATACTAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 3 0.11
32 13 0.46
33 8 0.29
34 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (32 bp):
TTTTAATTAAAATTTAATAATAAAAAATATTA
Found at i:3702414 original size:35 final size:35
Alignment explanation
Indices: 3702368--3702434 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
3702358 CAGTTAGTAA
3702368 TTATTCATAAATTTTCAAAACCCCATTTCAGGTAT
1 TTATTCATAAATTTTCAAAACCCCATTTCAGGTAT
3702403 TTATTCATAAATTTTCAAAACCCCATTTCAGG
1 TTATTCATAAATTTTCAAAACCCCATTTCAGG
3702435 GCTTTCTGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.39
Consensus pattern (35 bp):
TTATTCATAAATTTTCAAAACCCCATTTCAGGTAT
Found at i:3707184 original size:12 final size:12
Alignment explanation
Indices: 3707167--3707194 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
3707157 GCCTAAAACC
3707167 CACCTCAACATA
1 CACCTCAACATA
3707179 CACCTCAACATA
1 CACCTCAACATA
3707191 CACC
1 CACC
3707195 AAACAAGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.46, G:0.00, T:0.14
Consensus pattern (12 bp):
CACCTCAACATA
Found at i:3709815 original size:3 final size:3
Alignment explanation
Indices: 3709801--3709834 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
3709791 TCCCAAAACA
* *
3709801 AAT AAC AAT AAT AAT AAT AAT AAT AAA AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
3709835 TGTGAATCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:3712219 original size:24 final size:24
Alignment explanation
Indices: 3712192--3712240 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
3712182 TCTTCACACT
* *
3712192 CTTCATCATCACCGTCATCCTCTC
1 CTTCATCATCACCCTCAGCCTCTC
*
3712216 CTTCATCTTCACCCTCAGCCTCTC
1 CTTCATCATCACCCTCAGCCTCTC
3712240 C
1 C
3712241 ATCACCCTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.49, G:0.04, T:0.33
Consensus pattern (24 bp):
CTTCATCATCACCCTCAGCCTCTC
Found at i:3719109 original size:16 final size:17
Alignment explanation
Indices: 3719090--3719123 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
3719080 AAAATAATAT
3719090 ATAAAA-TTAATAAAAA
1 ATAAAAGTTAATAAAAA
3719106 ATAAAATGTTAATAAAAA
1 ATAAAA-GTTAATAAAAA
3719124 TGATAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
ATAAAAGTTAATAAAAA
Found at i:3720944 original size:22 final size:23
Alignment explanation
Indices: 3720910--3720953 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
3720900 TTTTTGAAAA
*
3720910 TTTGTATATTATTCT-AATATAAT
1 TTTGAATATTATT-TAAATATAAT
3720933 TTTGAATA-TATTTAAATATAA
1 TTTGAATATTATTTAAATATAA
3720954 AATAATTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 11 0.58
23 7 0.37
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (23 bp):
TTTGAATATTATTTAAATATAAT
Found at i:3721009 original size:18 final size:18
Alignment explanation
Indices: 3720971--3721010 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
3720961 AGTTTTATTT
*
3720971 TATAAAAATTAAAATATA
1 TATAAAAATTAAAATAAA
3720989 TATAAAAATTAAGAA-AAA
1 TATAAAAATTAA-AATAAA
3721007 TATA
1 TATA
3721011 TAATTGGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (18 bp):
TATAAAAATTAAAATAAA
Found at i:3721011 original size:20 final size:18
Alignment explanation
Indices: 3720971--3721013 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
3720961 AGTTTTATTT
*
3720971 TATAAAAATTAAAATATA
1 TATAAAAATTAAAAAATA
3720989 TATAAAAATTAAGAAAAATA
1 TATAAAAATT-A-AAAAATA
3721009 TATAA
1 TATAA
3721014 TTGGATTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 11 0.50
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
TATAAAAATTAAAAAATA
Found at i:3724233 original size:25 final size:25
Alignment explanation
Indices: 3724162--3724225 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
3724152 CAAATTTAGA
*
3724162 AAAAATTTCTCACTTAGAAATTTTAT
1 AAAAATTTATCA-TTAGAAATTTTAT
* *
3724188 AGAAATTTATCATTTGAAATTTT-T
1 AAAAATTTATCATTAGAAATTTTAT
3724212 AAAAATTTATCATT
1 AAAAATTTATCATT
3724226 GGATAATTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 14 0.41
25 10 0.29
26 10 0.29
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (25 bp):
AAAAATTTATCATTAGAAATTTTAT
Found at i:3724831 original size:19 final size:19
Alignment explanation
Indices: 3724786--3724843 Score: 50
Period size: 20 Copynumber: 3.1 Consensus size: 19
3724776 TCAATTGAAG
*
3724786 TTGAAAAATTCACCAGAAA-
1 TTGAAAAATTTACC-GAAAT
*
3724805 CTGAAAAAATTTACCGAAAT
1 TTG-AAAAATTTACCGAAAT
*
3724825 TTG-AAAATTTTCC-AAAT
1 TTGAAAAATTTACCGAAAT
3724842 TT
1 TT
3724844 TCTAGAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
17 6 0.18
18 9 0.27
19 6 0.18
20 12 0.36
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.31
Consensus pattern (19 bp):
TTGAAAAATTTACCGAAAT
Found at i:3724833 original size:18 final size:17
Alignment explanation
Indices: 3724810--3724843 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
3724800 AGAAACTGAA
3724810 AAAATTTACCGAAATTTG
1 AAAATTTACC-AAATTTG
*
3724828 AAAATTTTCCAAATTT
1 AAAATTTACCAAATTT
3724844 TCTAGAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (17 bp):
AAAATTTACCAAATTTG
Found at i:3725405 original size:44 final size:43
Alignment explanation
Indices: 3725289--3725567 Score: 233
Period size: 44 Copynumber: 6.4 Consensus size: 43
3725279 AGGCTTCACA
* * *
3725289 ACTTCTGAAAAATAAACAAGGCTCCTCTAAACAAAGACTCAAAG
1 ACTT-TGAAAAATAAATAAGGCTCCTCTAAACAAAGGCTCAACG
* ** * *
3725333 ACTTTGAAAAAGTAAATAA-GCAT-ATCTAAGTAGAGGCTTAACG
1 ACTTTGAAAAA-TAAATAAGGC-TCCTCTAAACAAAGGCTCAACG
* * **
3725376 ACTTTTGAAAAATAAATAAGGCTCCTCTAAATAGAGGCTCAATA
1 AC-TTTGAAAAATAAATAAGGCTCCTCTAAACAAAGGCTCAACG
* * *
3725420 ACTTTGAAAAATAAACAAGACTCCTCTAAACAAAGGCTCAATG
1 ACTTTGAAAAATAAATAAGGCTCCTCTAAACAAAGGCTCAACG
* * * * * *
3725463 ACTTTGAAAAAATAAAAAAGGCTTCTTTAAGCAAAGGTTTAACG
1 ACTTTG-AAAAATAAATAAGGCTCCTCTAAACAAAGGCTCAACG
* * **
3725507 ACTTTGAAAAAATAAATAAGGCTCAT-TTAACAGAA-GCTCAATA
1 ACTTTG-AAAAATAAATAAGGCTCCTCTAAACA-AAGGCTCAACG
*
3725550 ACTTTAAAAAATAAATAA
1 ACTTTGAAAAATAAATAA
3725568 AACTCATTTA
Statistics
Matches: 192, Mismatches: 36, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
42 12 0.06
43 87 0.45
44 93 0.48
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.24
Consensus pattern (43 bp):
ACTTTGAAAAATAAATAAGGCTCCTCTAAACAAAGGCTCAACG
Found at i:3725448 original size:87 final size:87
Alignment explanation
Indices: 3725272--3725522 Score: 231
Period size: 87 Copynumber: 2.9 Consensus size: 87
3725262 AAAACTCTTA
* * * *
3725272 TAAATAGAGGCTTCACAACTTCTGAAAAATAAACAAGGCTCCTCTAAACAAAGACTCAAAGACTT
1 TAAATAGAGGCTTAACGACTTTTGAAAAATAAAAAAGGCTCCTCTAAACAAAGACTCAAAGACTT
*
3725337 TGAAAAAGTAAATAAGCATATC
66 TGAAAAAGTAAACAAGCATATC
* * * * *
3725359 TAAGTAGAGGCTTAACGACTTTTGAAAAATAAATAAGGCTCCTCTAAATAGAGGCTCAATA-ACT
1 TAAATAGAGGCTTAACGACTTTTGAAAAATAAAAAAGGCTCCTCTAAACAAAGACTCAA-AGACT
*
3725423 TTGAAAAA-TAAACAAG-ACTCCTC
65 TTGAAAAAGTAAACAAGCA-T-ATC
* * * * * * * ** * *
3725446 TAAACAAAGGCTCAATGAC-TTTGAAAAAATAAAAAAGGCTTCTTTAAGCAAAGGTTTAACGACT
1 TAAATAGAGGCTTAACGACTTTTG-AAAAATAAAAAAGGCTCCTCTAAACAAAGACTCAAAGACT
*
3725510 TTGAAAAAATAAA
65 TTGAAAAAGTAAA
3725523 TAAGGCTCAT
Statistics
Matches: 134, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
85 1 0.01
86 12 0.09
87 116 0.87
88 5 0.04
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (87 bp):
TAAATAGAGGCTTAACGACTTTTGAAAAATAAAAAAGGCTCCTCTAAACAAAGACTCAAAGACTT
TGAAAAAGTAAACAAGCATATC
Found at i:3725581 original size:15 final size:15
Alignment explanation
Indices: 3725561--3725594 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
3725551 CTTTAAAAAA
3725561 TAAATAAAACTCATT
1 TAAATAAAACTCATT
**
3725576 TAAATAAGGCTCATT
1 TAAATAAAACTCATT
3725591 TAAA
1 TAAA
3725595 CAGAGGCTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (15 bp):
TAAATAAAACTCATT
Found at i:3725588 original size:57 final size:58
Alignment explanation
Indices: 3725519--3725639 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 58
3725509 TTTGAAAAAA
*
3725519 TAAATAAGGCTCATTT-AACAGAAGCTCAATAACTTTAAAAAATAAATAAAACTCATT
1 TAAATAAGGCTCATTTAAACAGAAGCTCAATAACTTTAAAAAATAAATAAAACTCATC
* * * * *
3725576 TAAATAAGGCTCATTTAAACAGAGGCTCAATAATTTTGAAAAATAAATAAGACTCCTC
1 TAAATAAGGCTCATTTAAACAGAAGCTCAATAACTTTAAAAAATAAATAAAACTCATC
3725634 TAAATA
1 TAAATA
3725640 GAGACTCAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 16 0.28
58 41 0.72
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (58 bp):
TAAATAAGGCTCATTTAAACAGAAGCTCAATAACTTTAAAAAATAAATAAAACTCATC
Found at i:3725603 original size:16 final size:15
Alignment explanation
Indices: 3725570--3725604 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
3725560 ATAAATAAAA
*
3725570 CTCATTTAAATAAGG
1 CTCATTTAAACAAGG
3725585 CTCATTTAAACAGAGG
1 CTCATTTAAACA-AGG
3725601 CTCA
1 CTCA
3725605 ATAATTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (15 bp):
CTCATTTAAACAAGG
Found at i:3725624 original size:43 final size:44
Alignment explanation
Indices: 3725576--3725671 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 44
3725566 AAAACTCATT
* *
3725576 TAAATAAGGCTCATTTAAACAGAGGCTCAATAATTTTG-AAAAA
1 TAAATAAGGCTCATCTAAACAGAGACTCAATAATTTTGAAAAAA
* * * *
3725619 TAAATAAGACTCCTCTAAATAGAGACTCAATGATTTTGAAAAAA
1 TAAATAAGGCTCATCTAAACAGAGACTCAATAATTTTGAAAAAA
3725663 TAAATAAGG
1 TAAATAAGG
3725672 TAAAATAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 32 0.71
44 13 0.29
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (44 bp):
TAAATAAGGCTCATCTAAACAGAGACTCAATAATTTTGAAAAAA
Found at i:3726511 original size:79 final size:77
Alignment explanation
Indices: 3726424--3726581 Score: 178
Period size: 79 Copynumber: 2.0 Consensus size: 77
3726414 ATCCTTATTA
* * * *
3726424 ATTTCATCACTT-GATAACAACCCTCA-AG-CTTTTCAGCACTAGTAATTTCAGAATAAATTTCG
1 ATTTCATCA-TTGGATAACAA--CTCATAGCCTTGTCACCACTAGCAATTTCAGAAT-AATTTCA
* * *
3726486 TTCATTGATCTACATT
62 TCCACTAATCTACATT
*
3726502 ATTTCCATCATTGGATCACAACTCATAGCCTTGTCACCACTAGCAATTTCAGAATAATTTCATCC
1 ATTT-CATCATTGGATAACAACTCATAGCCTTGTCACCACTAGCAATTTCAGAATAATTTCATCC
3726567 ACTAATCTACATT
65 ACTAATCTACATT
3726580 AT
1 AT
3726582 CTCTATTATT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
77 4 0.06
78 29 0.43
79 35 0.51
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.35
Consensus pattern (77 bp):
ATTTCATCATTGGATAACAACTCATAGCCTTGTCACCACTAGCAATTTCAGAATAATTTCATCCA
CTAATCTACATT
Found at i:3726601 original size:78 final size:79
Alignment explanation
Indices: 3726460--3726652 Score: 210
Period size: 78 Copynumber: 2.5 Consensus size: 79
3726450 AGCTTTTCAG
* * * * *
3726460 CACTAGTAATTTCAGAATAAATTTCGTTCATTGATCTACATTATTTCCATCATTGGATCACAACT
1 CACTAGCAATTTCAGAATAAATTTCATCCATTAATCTACATTATCTCCATCATTGGATCACAACT
* *
3726525 CATAGCCTTGTCAC
66 CACAGCCTTCTCAC
* * * *
3726539 CACTAGCAATTTCAGAAT-AATTTCATCCACTAATCTACATTATCTCTATTATT-TACTCACAAC
1 CACTAGCAATTTCAGAATAAATTTCATCCATTAATCTACATTATCTCCATCATTGGA-TCACAAC
** *
3726602 TCACAGGTTTCTCAG
65 TCACAGCCTTCTCAC
* * *
3726617 CATTATCAATTTCAAAATAAATTTCATCCATTAATC
1 CACTAGCAATTTCAGAATAAATTTCATCCATTAATC
3726653 CAAATTACTT
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
77 1 0.01
78 60 0.64
79 33 0.35
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (79 bp):
CACTAGCAATTTCAGAATAAATTTCATCCATTAATCTACATTATCTCCATCATTGGATCACAACT
CACAGCCTTCTCAC
Found at i:3728270 original size:22 final size:23
Alignment explanation
Indices: 3728245--3728289 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
3728235 AATGAAATCC
3728245 TATTA-TATAAAAAAAATCTTAA
1 TATTACTATAAAAAAAATCTTAA
*
3728267 TATTACTCTAAAAAAAATCTTAA
1 TATTACTATAAAAAAAATCTTAA
3728290 AATGACAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (23 bp):
TATTACTATAAAAAAAATCTTAA
Found at i:3733820 original size:25 final size:26
Alignment explanation
Indices: 3733774--3733829 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
3733764 TTCACCTAAG
*
3733774 AATTTTATAAAAATTTACCATTTGA-
1 AATTTTATAAAAATTTACCATTAGAT
*
3733799 AATTTT-TAAAAATTTCATCATTAGAT
1 AATTTTATAAAAATTT-ACCATTAGAT
3733825 AATTT
1 AATTT
3733830 GTATTTATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 9 0.33
25 13 0.48
26 5 0.19
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (26 bp):
AATTTTATAAAAATTTACCATTAGAT
Found at i:3733950 original size:22 final size:20
Alignment explanation
Indices: 3733924--3733969 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
3733914 ACACATAAAT
3733924 AAATAACTAAATAAAATAAAAA
1 AAATAACTAAA-AAAA-AAAAA
* *
3733946 AAATACCTAAAAAAAAAAAG
1 AAATAACTAAAAAAAAAAAA
3733966 AAAT
1 AAAT
3733970 GACTCAGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 4 0.18
22 10 0.45
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (20 bp):
AAATAACTAAAAAAAAAAAA
Found at i:3737815 original size:17 final size:17
Alignment explanation
Indices: 3737795--3737855 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 17
3737785 TTTAAGATTT
3737795 TTTATTATTTATTTTCA
1 TTTATTATTTATTTTCA
*
3737812 TTTATTTTTATAGGTTATTCA
1 TTTATTATT-TA--TT-TTCA
*
3737833 TTTTCATTAGTTATTTTCA
1 -TTT-ATTATTTATTTTCA
3737852 TTTA
1 TTTA
3737856 GAGATTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
17 9 0.26
18 5 0.14
19 4 0.11
20 4 0.11
21 4 0.11
22 5 0.14
23 4 0.11
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.66
Consensus pattern (17 bp):
TTTATTATTTATTTTCA
Found at i:3737885 original size:21 final size:21
Alignment explanation
Indices: 3737859--3737901 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
3737849 TCATTTAGAG
3737859 ATTTATTTCTT-ATATATCTTT
1 ATTTATTTCTTAAT-TATCTTT
3737880 ATTTATTTCTTAATTATCTTT
1 ATTTATTTCTTAATTATCTTT
3737901 A
1 A
3737902 CTTTGAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTATTTCTTAATTATCTTT
Found at i:3739241 original size:141 final size:141
Alignment explanation
Indices: 3739053--3739325 Score: 375
Period size: 141 Copynumber: 1.9 Consensus size: 141
3739043 GATATAAGAA
* * * * * *
3739053 AAGATTAAGCCTAGAGGAGCTTGATTTAAGGAAAGAGTTCAATTTCATGTTTTGAGGATCAATTT
1 AAGATCAAACCTAGAGGAGCTTGATTTAAAGAAAGAGTTCAAGTTCATATTTTAAGGATCAATTT
* * * * *
3739118 ACATGAAGTTTAAACATGCACAAGAGAAGATTGTTATGAGACTTTCATTGCAAGTTAAGTCAAGC
66 ACATGAAGCTTAAACATGCACAAGAGAAGATTGTTATAAGACTTCCATTACAAGTAAAGTCAAGC
3739183 ATTTTAGCATG
131 ATTTTAGCATG
* ***
3739194 AAGATCAAACCTAGAGGAGCTTGATTTAAAGAAAGAGTTCGAGTTCATATTTTAAGGATTGGTTT
1 AAGATCAAACCTAGAGGAGCTTGATTTAAAGAAAGAGTTCAAGTTCATATTTTAAGGATCAATTT
* * * *
3739259 GCATGAAGCTTGAAGATGCACAAGAGAAGATTGTTATAAGACTTCCATTATAAGTAAAGTCAAGC
66 ACATGAAGCTTAAACATGCACAAGAGAAGATTGTTATAAGACTTCCATTACAAGTAAAGTCAAGC
3739324 AT
131 AT
3739326 ATCTAGTGTG
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
141 113 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (141 bp):
AAGATCAAACCTAGAGGAGCTTGATTTAAAGAAAGAGTTCAAGTTCATATTTTAAGGATCAATTT
ACATGAAGCTTAAACATGCACAAGAGAAGATTGTTATAAGACTTCCATTACAAGTAAAGTCAAGC
ATTTTAGCATG
Found at i:3740153 original size:24 final size:24
Alignment explanation
Indices: 3740107--3740155 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
3740097 GGTAATTTTA
**
3740107 TTTATTTACTTATTTTATGTAAAT
1 TTTATTTACTTATAATATGTAAAT
* *
3740131 TTTATTTATTTATAATATTTAAAT
1 TTTATTTACTTATAATATGTAAAT
3740155 T
1 T
3740156 AATTTTTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TTTATTTACTTATAATATGTAAAT
Found at i:3740159 original size:28 final size:28
Alignment explanation
Indices: 3740099--3740161 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
3740089 GTCTTTTTGG
* **
3740099 TAATTTTATTTATTTACTTATTTTATGT
1 TAATTTTATTTATTTACTAATTTTAAAT
*
3740127 AAATTTTATTTATTTA-TAATATTTAAAT
1 TAATTTTATTTATTTACTAAT-TTTAAAT
3740155 TAATTTT
1 TAATTTT
3740162 TGTTAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 3 0.10
28 26 0.90
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (28 bp):
TAATTTTATTTATTTACTAATTTTAAAT
Found at i:3741750 original size:18 final size:18
Alignment explanation
Indices: 3741727--3741765 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
3741717 AATTGTATAC
3741727 ACGACTTAATAGTTGATA
1 ACGACTTAATAGTTGATA
3741745 ACGACTTAATAGTTGATA
1 ACGACTTAATAGTTGATA
3741763 ACG
1 ACG
3741766 GCTGTTGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (18 bp):
ACGACTTAATAGTTGATA
Found at i:3742444 original size:28 final size:28
Alignment explanation
Indices: 3742412--3742499 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
3742402 AAATTTTCAT
*
3742412 GAAATATTTAAATAACATAAAAATGAAA
1 GAAATATTTAAATAACATAAAAATAAAA
* ** *
3742440 GAAAT-TATAAA-AATC-TAAAAAATCCAT
1 GAAATATTTAAATAA-CAT-AAAAATAAAA
* *
3742467 GAAATACTTAAATAAAATAAAAATAAAA
1 GAAATATTTAAATAACATAAAAATAAAA
3742495 GAAAT
1 GAAAT
3742500 TAACTTTGCA
Statistics
Matches: 45, Mismatches: 10, Indels: 10
0.69 0.15 0.15
Matches are distributed among these distances:
26 3 0.07
27 18 0.40
28 21 0.47
29 3 0.07
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (28 bp):
GAAATATTTAAATAACATAAAAATAAAA
Found at i:3742837 original size:18 final size:17
Alignment explanation
Indices: 3742811--3742847 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
3742801 TTTATGTTAA
*
3742811 AAATTAATAAATCAAATC
1 AAATGAATAAAT-AAATC
3742829 AAATGAATAAATAAATC
1 AAATGAATAAATAAATC
3742846 AA
1 AA
3742848 TAAATTATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.65, C:0.08, G:0.03, T:0.24
Consensus pattern (17 bp):
AAATGAATAAATAAATC
Found at i:3743430 original size:15 final size:16
Alignment explanation
Indices: 3743412--3743449 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
3743402 TTTTATTTTT
*
3743412 TAATTTTAAGT-TACA
1 TAATTTTAACTATACA
3743427 TAATTTTAACTATACA
1 TAATTTTAACTATACA
3743443 TGAATTT
1 T-AATTT
3743450 AGATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
16 5 0.25
17 5 0.25
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (16 bp):
TAATTTTAACTATACA
Found at i:3746195 original size:10 final size:10
Alignment explanation
Indices: 3746180--3746209 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
3746170 ATCAAGCTTT
3746180 TATATTTTAA
1 TATATTTTAA
3746190 TATATTTTAA
1 TATATTTTAA
3746200 T-TATTTTAA
1 TATATTTTAA
3746209 T
1 T
3746210 TAATAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTTAA
Found at i:3746206 original size:9 final size:9
Alignment explanation
Indices: 3746182--3746211 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
3746172 CAAGCTTTTA
3746182 TATTTTAAT
1 TATTTTAAT
3746191 ATATTTTAAT
1 -TATTTTAAT
3746201 TATTTTAAT
1 TATTTTAAT
3746210 TA
1 TA
3746212 ATAAAATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTTAAT
Found at i:3746649 original size:18 final size:18
Alignment explanation
Indices: 3746620--3746665 Score: 83
Period size: 18 Copynumber: 2.5 Consensus size: 18
3746610 TCAAAATTGA
3746620 TATTTATTTAAATTATTTT
1 TATTT-TTTAAATTATTTT
3746639 TATTTTTTAAATTATTTT
1 TATTTTTTAAATTATTTT
3746657 TATTTTTTA
1 TATTTTTTA
3746666 TATTTAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 22 0.81
19 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TATTTTTTAAATTATTTT
Found at i:3747717 original size:27 final size:26
Alignment explanation
Indices: 3747663--3747719 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
3747653 TATGGTCCTA
* * *
3747663 TTTTTAATGTTTAAAAATTAATTCTT
1 TTTTTATTTTTTAAAAATAAATTCTT
3747689 TTGTTTATTTTTTAAAAATAAA-TCTT
1 TT-TTTATTTTTTAAAAATAAATTCTT
3747715 TTTTT
1 TTTTT
3747720 TCTTTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 3 0.11
26 8 0.30
27 16 0.59
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TTTTTATTTTTTAAAAATAAATTCTT
Found at i:3747728 original size:27 final size:27
Alignment explanation
Indices: 3747672--3747727 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
3747662 ATTTTTAATG
*
3747672 TTTAAAAATTAATTCTTTTGTTTATTT
1 TTTAAAAATTAAATCTTTTGTTTATTT
* *
3747699 TTTAAAAA-TAAATCTTTTTTTTCTTT
1 TTTAAAAATTAAATCTTTTGTTTATTT
3747725 TTT
1 TTT
3747728 TTAAGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (27 bp):
TTTAAAAATTAAATCTTTTGTTTATTT
Found at i:3748286 original size:6 final size:6
Alignment explanation
Indices: 3748195--3748397 Score: 55
Period size: 7 Copynumber: 31.8 Consensus size: 6
3748185 GGAAATTGGT
*
3748195 TTTA-G TTTAGG -TTAGG ATTT-GG TTTAGGG TTTTAGG -TT-GA TTTAGGG
1 TTTAGG TTTAGG TTTAGG -TTTAGG TTTA-GG -TTTAGG TTTAGG TTTA-GG
* *
3748242 TTTAGG -CTAGG ATTTAAGG -TTAGG TTTAGAT TTTAAGG TTTAGG TTTAAGG
1 TTTAGG TTTAGG -TTT-AGG TTTAGG TTTAG-G TTT-AGG TTTAGG TTT-AGG
* * * *
3748293 TCTAGG AGTTAGTG TTTATGT TTTCAGG TTTAGAG TTTGGGG TTTAAGG
1 TTTAGG -TTTAG-G TTTA-GG TTT-AGG TTTAG-G TTT-AGG TTT-AGG
* * * *
3748342 TTT-GA TTTAGGG TTTATG TTTAAGG TTTGGGG TTTAGG ATTT-GA TTTAAGG
1 TTTAGG TTTA-GG TTTAGG TTT-AGG TTT-AGG TTTAGG -TTTAGG TTT-AGG
3748393 TTTAG
1 TTTAG
3748398 AATAACAACT
Statistics
Matches: 146, Mismatches: 24, Indels: 55
0.65 0.11 0.24
Matches are distributed among these distances:
4 1 0.01
5 30 0.21
6 31 0.21
7 71 0.49
8 13 0.09
ACGTcount: A:0.20, C:0.01, G:0.32, T:0.47
Consensus pattern (6 bp):
TTTAGG
Found at i:3749451 original size:143 final size:143
Alignment explanation
Indices: 3749223--3749541 Score: 315
Period size: 142 Copynumber: 2.2 Consensus size: 143
3749213 GTGTGATTAA
** * * * **
3749223 ATTTTTAATGCACCAAAAATAATTAAATAATATGAAACCATGATTTAAAGTGTTTTATAAAAAAT
1 ATTTTTAATGCATAAAAAATAATAAAATAATATGAAACCACGATCTAAAGCATTTTATAAAAAAT
*
3749288 CGACTATAAAAAAGTCAAATTACAAAAATACCT-TGTAAGGAAATTTT-AGTAATTTCACACATT
66 AGACTATAAAAAAGTCAAATTACAAAAATACCTCT-T-AGGAAATTTTGA-TAATTTCACACATT
* * *
3749351 CTGAGATGCAATCATG
128 CTAAGATACAATCAAG
* * * *
3749367 GTTTTTAATGCATAAAAAATTATGAAATAATATGAAACCACGATCTAGAGCATTTCTA-AAAAAA
1 ATTTTTAATGCATAAAAAATAATAAAATAATATGAAACCACGATCTAAAGCATTT-TATAAAAAA
* * * * ** * *
3749431 -AGAC-ATTGAAAAGGTTAAATTACGAAAATACCTCTTAGGGTATTTTGATAATTTCATACATTT
65 TAGACTA-TAAAAAAGTCAAATTACAAAAATACCTCTTAGGAAATTTTGATAATTTCACACATTC
* *
3749494 TAAGGTACGATCAAG
129 TAAGATACAATCAAG
* *
3749509 ATTTTTAATGTATAAAAAATCATAAAATAATAT
1 ATTTTTAATGCATAAAAAATAATAAAATAATAT
3749542 TTAAATATGA
Statistics
Matches: 143, Mismatches: 28, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
142 61 0.43
143 28 0.20
144 52 0.36
145 2 0.01
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (143 bp):
ATTTTTAATGCATAAAAAATAATAAAATAATATGAAACCACGATCTAAAGCATTTTATAAAAAAT
AGACTATAAAAAAGTCAAATTACAAAAATACCTCTTAGGAAATTTTGATAATTTCACACATTCTA
AGATACAATCAAG
Found at i:3755273 original size:10 final size:9
Alignment explanation
Indices: 3755261--3755361 Score: 50
Period size: 10 Copynumber: 11.1 Consensus size: 9
3755251 AAATTTTATT
3755261 TAATTTAAA
1 TAATTTAAA
**
3755270 TTAAGATAAA
1 -TAATTTAAA
3755280 TAAGTTTAAA
1 TAA-TTTAAA
*
3755290 TAATTGAAA
1 TAATTTAAA
*
3755299 -GATTTAAA
1 TAATTTAAA
3755307 TAAGTTTAAA
1 TAA-TTTAAA
3755317 T--TTTAAA
1 TAATTTAAA
*
3755324 -ATTTTCAAA
1 TAATTT-AAA
*
3755333 TATTCTTAAA
1 TAAT-TTAAA
*
3755343 -ATTTTAAA
1 TAATTTAAA
3755351 TAAGTTTAAA
1 TAA-TTTAAA
3755361 T
1 T
3755362 TCGCTTGGCC
Statistics
Matches: 72, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
7 6 0.08
8 14 0.19
9 16 0.22
10 34 0.47
11 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (9 bp):
TAATTTAAA
Found at i:3755359 original size:18 final size:18
Alignment explanation
Indices: 3755318--3755360 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
3755308 AAGTTTAAAT
*
3755318 TTTAAAATTTTCAAATAT
1 TTTAAAATTTTCAAATAG
3755336 TCTTAAAATTTT-AAATAAG
1 T-TTAAAATTTTCAAAT-AG
3755355 TTTAAA
1 TTTAAA
3755361 TTCGCTTGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (18 bp):
TTTAAAATTTTCAAATAG
Found at i:3758013 original size:180 final size:179
Alignment explanation
Indices: 3757444--3763260 Score: 1699
Period size: 181 Copynumber: 32.5 Consensus size: 179
3757434 TGACAAATAC
* * * * * * *
3757444 TATTTTATTCCAAACAAACTTATATGAATAGAAACAACTGTTTTATGACAAAACAAAAAATCATA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATA
* * * * * *** ** *
3757509 ACGATTCAAAATAAATAATTGTTCAAATACTCCTAACTATTTGGGCTCGTTTGGTAAACAGATTT
66 ACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATTT
* * * *
3757574 ATTTTTAAAATTTTTTACTTATTAATATTTGGAATTTTTATAAATTAGTAT
131 ATTTTTAAAATCTTTTACTTATTAAT-TTT-TAATATTAATAAATTAGTAT
* * * * * *
3757625 TATTTTATTCCAAATAAGCTTGTATAAACAGAAATAATTAGTTTATGACAAAATAAAAAGGTCAT
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAA-GTCAT
** * * * * * * *
3757690 AATGATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTAAACTCACTTGGTAAATAGATT
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATT
* * * *
3757755 TATTTTTTAAATCTTTTACTTATTAATTTTTAGACTTTTAGTAAATTAATAT
130 TATTTTTAAAATCTTTTACTTATTAATTTTTA-A-TATTAATAAATTAGTAT
* *
3757807 TATTTTA-ATCTGAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
1 TATTTTATTTC-AAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
* * * * * * *
3757871 AACAAGTTGAAATAAATAATTACTCAAATAGTTATAACAATTTAAACTTATTTAATAAATAGA-T
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATT
* * *
3757935 AATCTTTT-AAATCTTTTATTTATTAATTATCTTAATATTAATAAATTTGTAT
130 TAT-TTTTAAAATCTTTTACTTATTAATT-T-TTAATATTAATAAATTAGTAT
* * * * ** *
3757987 TATTTTATTTCAAATAAGCTTATATGAGCAAAAAAAATCATTTTATGATGAAAC-AAAAGCTTAT
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAG-TCAT
* * * * * * * * * *
3758051 AGCAATTTCAAATAGATAATTGTTTAAATAGTCATAATTATTTAAACATGTTTGATAAATAAATT
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATT
* * * *
3758116 TATTTTTTAAATCTCTTAATTATTAATTTTTGGAATATTAATAACTTAGTAT
130 TATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
* * * * * *
3758168 TATTTTATTTCGAATAAGCTTATATGAACTGAAATAATTTTTTTATGACAAAATAAAATGTCATA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATA
* * * *
3758233 ACAATTTAAAATAAATAATTATTCAAA-A-TGAT---TATTT-GATTTAGTTTGATAAACATATT
66 ACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTA-TTTGATAAACAGATT
* **
3758292 TATTTTTAAAATTTTTTACTTATTAATTGTCAAAATATTAATAAATTA-TAT
130 TATTTTTAAAATCTTTTACTTATTAATT-T-TTAATATTAATAAATTAGTAT
* * * * * * * *
3758343 TATTTGA-ATCTAAAAAAGCTTGTATGAACAGAAACTATTATTTTATAATAGAACAAAAAGTCAT
1 TATTTTATTTC-AAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
** * * * * * *
3758407 AATGATTTGAAATAAATAATTACTT-AAATGGTCATAACTTTTTGAAC-TATTTTAATAAACATA
65 AACAATTTAAAATAAATAATTA-TTCAAATAGTCATAACTATTTAAACTTA-TTTGATAAACAGA
* *
3758470 TTTATTTTTAAAATC---T-CTTATTAATTTTTAAAATATTAGTAGATTAGTAT
128 TTTATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
* * * * * * * *
3758520 TATTTTATTTTAAACAAACTTATATGAATAAAAAC-ATTTTTTTATGA-AAAAAATAAAAGGTTA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACA-AAAA-GTCA
* * * * * ** * * *
3758583 TAACAATTTAAAATAGATAATTATTCAAATAATCATAATTATTTGAACTGATAAGGTAAAGAGAA
64 TAACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGAT
* * * *
3758648 TTATTTTTTAAA---TAT-CTTATTAATTTTAAAATATTAATAAATTCA-TTT
129 TTATTTTTAAAATCTTTTACTTATTAATTTT-TAATATTAATAAATT-AGTAT
* ** * * *
3758696 TATTTTATATT-GAATAAGC-TAGTATGAATTGAAAAAAATTATTTTATGACAAGAC-AGAAGAT
1 TATTTTAT-TTCAAATAAGCTTA-TATGAACAG-AAACAATTATTTTATGACAAAACAAAAAG-T
* * * * * * * * * * **
3758758 CTTAACGATTTGAAATAGAA-AATTATTTATATAGTCTTAAATATTTGAA-TTGGTTCGGCAAAC
62 CATAACAATTTAAAATA-AATAATTATTCAAATAGTCATAACTATTTAAACTT-ATTTGATAAAC
* * * * * * * *
3758821 AAATTTATTTTTTAAATCTCTCAGTTATTAATTTTTGAAATTTTATTATATTAGTAT
125 AGATTTATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
** * * * * * **
3758878 TATTTTATTTTGAATAAACTTGTATGTACAGAAATAATTCTTTTATGACAAAATGAAAAG-CTAT
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTC-AT
* * * * * * * * *
3758942 AACAATTTGAAGTATATAATTGTTAAAATAGTCATAGCTAATTAAA-TTGATTTGGTAAACAAAT
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTT-ATTTGATAAACAGAT
* * * *
3759006 TTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTTATAAATTAGTAT
129 TTATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
* * * * *
3759059 TATTTTA-TTCTAAATAAACTTGTATGATGAA-A-AAACACTTGTTATATGACCAAAC-AAAAGA
1 TATTTTATTTC-AAATAAGC-T-TAT-ATGAACAGAAACAATTATTTTATGACAAAACAAAAAG-
* ** * * * *
3759120 TAATAATGATTTAAAATAGATAATTATTTGTTGAAAT-GATCATAACTATTTGAA-TTGATTTGG
61 TCATAACAATTTAAAATAAATAATTA----TTCAAATAG-TCATAACTATTTAAACTT-ATTTGA
* ** ** ** * *
3759183 TAAATAGATTCGCTTTTT-AAATCACTTACTT-TTTTTTTTTAGAATAGTAAGAAATTAGTAT
120 TAAACAGATT-TATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
** * * * * * *
3759244 TATTTTATTTTGAATAAACTTGTATAAACTGAAAAAATTATTTTATGACAAAAGAAAAA-TCATA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATA
** * * * * ** * * *
3759308 ATGATTTTAAATAGACT-ATTGTTCAAATAGTCATAATTATTTAAGTTTATTCGACAAACAAATT
66 ACAATTTAAAATA-AATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATT
* * * *
3759372 TATTTTTTTTAAA-CTCTTACTTAATAATTTTTCAAATATTAAGAAATTAGTAT
130 TA--TTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
** * * * * * *
3759425 TATTTTATTTTGAATAAGCTTTTATGAACTGAAATAATTGTTTTAT-ATCAAAACAAAAGGT-TT
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGA-CAAAACAAAAAGTCAT
*** * * * * *** * *
3759488 AATGTTTTTAAATAATTAATTATTTAAATAGTCATAACTATTTGAACCCGTTCGATAAATAGATT
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATT
* * * * * * *
3759553 AATTTTTTCAAATCTTTTGCGTATTAATTTTTCAAATGTTAGTAAATTTGTAT
130 TA-TTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
** * * * * * * * *
3759606 TATTTT-TAACTAAATAAGCTTCTATGATCAAAAACTATTGTTTTATGATAAAACAAAGA-TCTT
1 TATTTTATTTC-AAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
* * ** * * * * * * * *
3759669 AACAATTTGAGATTTATAATTGTTTAAATAGTAATAATTATTTGAA-TTGGTTT-AGTTAACAAA
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTT-ATTTGA-TAAACAGA
* * *
3759732 TTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAATAT
128 TTTATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
* * * ** * * **** **
3759786 TATTTTATTTCAAATAAGCTTGTATGATA-AAATAACCATTAAAGTCATGAC-GATTTGAACTTC
1 TATTTTATTTCAAATAAGCTTATATGA-ACAGA-AACAATT-ATTTTATGACAAAACAAAAAGTC
* * ** * * * **
3759849 ATAA-ACA-TTGAAATAACCATAATTATTTTAACCGATTCAATAA--A--CAAATTTATTTTTTA
63 ATAACA-ATTTAAAATAA--ATAATTA-TTCAA-ATAGTC-ATAACTATTTAAACTTATTTGATA
** * * * * * * *
3759908 AATTTGTTACTTATTAATTTAGAAA-ATATTAATAAATTAATATTATT-TTATTCCATATAAGCT
122 AA-CAG--ATTTATT--TTTA-AAATCTTTTACT-TATTAAT-TT-TTAATATT--A-ATAA-AT
3759971 T-GTAT
174 TAGTAT
* *** * * * * * * * **** **
3759976 TA-ATTAAAAC-AAT-TGTTTTTTTG-ACA-AATCAA--ATGATTATAACGATTTTAACTAG--A
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTAT-TTTATGAC-AAAACAAAAAGTCA
** * * * * * * ** * * *
3760032 TAATTA-TTCAAATAGTAATAACTATTTAAACTTGT-TTGA-TAAATAGATTTT-TT--TAAA-A
64 TAACAATTTAAAATA--AATAATTATTCAAA-TAGTCATAACTATTTAAACTTATTTGATAAACA
* * * * * ** ** *
3760090 TATTT-TTCTTATTAA--TTTT-CTTAAT-GTTAATAA-ATTGGT--ATTAAT-T
126 GATTTATTTTTA-AAATCTTTTACTTATTAATTTTTAATATTAATAAATTAGTAT
* * * * ** * *
3760136 TA---T-TTT-GAATAAACTTGTACGAATTGAAACAATTATTTTTTGACTAAACAAAAAGTCATA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATA
* * * * ** * * * * * *
3760196 GCAATTTGAAATAGATAATTATTCTAATAGTTTTAACCAATTGAACTAATTAGATAAACAAATTT
66 ACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATTT
* * *
3760261 ATTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTATTAAATTAATAT
131 ATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
* * * ** * * *
3760312 TATTTTATTCCGAATAAGCTTGTACAAAC-GAAACAATTGTTTTACGACAAAAGAAAATA-TCAT
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAA-AGTCAT
* * * * * * * ** ** *
3760375 AACAATTTGAAATAGATAATTATTCATATAGTCTTAATTATTTGAAC-TAGCTTGGCAATTAAAT
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTA-TTTGATAAACAGAT
* * ** ** * *
3760439 TTATCTTT-AAATTTTCTTGGTTATTAAGTTTCAGAATATTATTAAATTAGTAC
129 TTATTTTTAAAATCTT-TTACTTATTAA-TTT-TTAATATTAATAAATTAGTAT
* ** * * * * *
3760492 TATTTTA-GTCAAAATAA-AATAGTATAAACAG-AACTAATTATTTGATGACAAAATAAAAGGTT
1 TATTTTATTTC-AAATAAGCTTA-TATGAACAGAAAC-AATTATTTTATGACAAAACAAAAAGTC
* * * * *
3760554 ATAACAATTTGAAATATATAATTATTCAAATAGTCAAAATTATTTGAAA--TAGTTTGGTAAACA
63 ATAACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTT-AAACTTA-TTTGATAAACA
* ** * * *
3760617 AATTTGCCTTTT-AAATCTCTTT--TGATTAATTTTGTAAATATTGATCAATTAGTAT
126 GATTT-ATTTTTAAAATCT-TTTACTTATTAATTTT-T-AATATTAATAAATTAGTAT
* * * * * ** * *
3760672 TATTTTATTTCGAACAAACTTATACT-AACAAAAATAATTGGTTTATGACAAAATAAAAAGTAAT
1 TATTTTATTTCAAATAAGCTTATA-TGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
** * * ** * ** *
3760736 AATGATTTGAAATATATAATTGCTCAAATAGTTATAA-TCATTTAAACTGGTTTGGA-AAA-TGA
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACT-ATTTAAACTTATTT-GATAAACAG-
* * * *
3760798 AATTATTTTCT-AAATCTCTTACTTATAAATTTTTAAAATATTAAT-AATTAGTTT
127 ATTTATTTT-TAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
* * * ** * * * *
3760852 TATTCTATAAT-GAATAAGCTGGTATGAGCTA-AAATAATTATTTTATAATAAAAC-AAAAGATC
1 TATTTTAT-TTCAAATAAGCTTATATGAAC-AGAAACAATTATTTTATGACAAAACAAAAAG-TC
** * * * ** * *
3760914 ATAACAATTTAAAATAAATAATTATTCATGTAATCTTAACTATTTGAA-TTGGCTCGACAAAC-G
63 ATAACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTT-ATTTGATAAACAG
* * * * * * *
3760977 ACATTATTTTTTAAATCTCTTAATTATTAATTTTCAAAATATTATTAAATTATTATTAT
127 A-TTTATTTTTAAAATCTTTTACTTATTAATTTT--TAATATTAAT-AA--ATTAGTAT
* * * * * * * * * * *
3761036 TATTTTATTTCGAATAAGCTTGCT-TGATCAAAAACAAAATGTTTTATTATAGAACAAAAGGTTA
1 TATTTTATTTCAAATAAGCTT-ATATGAACAGAAAC-AATTATTTTATGACAAAACAAAAAGTCA
* * * * ** *
3761100 TAACAATTTAAAATATATAATTATTCAAATA-ACTATAATTATTTGAACTGGTTT-AGTAAACAA
64 TAACAATTTAAAATAAATAATTATTCAAATAGTC-ATAACTATTTAAACTTATTTGA-TAAACAG
* * *
3761163 ATTTATTTTTTTTAAATC---T-CTTATTAATTCTTGAAATATTAATAAATTAGAAT
127 ATTTA--TTTTTAAAATCTTTTACTTATTAATT-TT-TAATATTAATAAATTAGTAT
* * * * * *
3761216 TATTTTATTTCGAATAAGCTTGTATGTTAA-A-AACCAATTGTTTTATAACAAAACAAAAAGGTA
1 TATTTTATTTCAAATAAGCTTATATG--AACAGAAACAATTATTTTATGACAAAACAAAAA-GTC
* * * * * *
3761279 ATAACGATTTGAAATAAATAATTATTCAAGTGGTCATAATTATTTAAA-TTGATTT-AGTAAACT
63 ATAACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTT-ATTTGA-TAAACA
* * * *
3761342 GATTTATTTTTTATATCTCTTACTTATTAATTTTTAAAATATTAATAAAATAGTAT
126 GATTTATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
*** * * * *
3761398 TATTTTATTTTGGATAAAG-TTTTATGAACTA-AAACAATTGTTTTATGACAATAC-AAAAGATT
1 TATTTTATTTCAAAT-AAGCTTATATGAAC-AGAAACAATTATTTTATGACAAAACAAAAAG-TC
** * * * * * * ** * ** * *
3761460 ATAATGATTTTAAATAGATAATTGTTTAAATAGTTATAACTATTTGAGTTTGTTCAATAAATATA
63 ATAACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGA
* * *
3761525 TTTATTTTTTCAAATCTCTTGCTTATTAATTTTTTGAATATTAATAAATTAGTAT
128 TTTA-TTTTTAAAATCTTTTACTTATTAA-TTTTT-AATATTAATAAATTAGTAT
* * * * * * * *
3761580 TAGTTTATTTCGAATAAGTTTATATGAACTGAAACAATTATTATATAAC-TAACGAAGAAGGTCA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAAC-AA-AAAGTCA
* * * ** * ** * *
3761644 AAACAATTTGAAAA-AGATAATTATTCTAATAGTTTTAACTATTTGAACTGGTTCGATAAACACA
64 TAACAATTT-AAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGA
* * * ** *
3761708 TTAATTTTTTAAATC---T-CTTATTTA-TTTT--TA-T-CCAAATAAGT-T
128 TTTATTTTTAAAATCTTTTACTTATTAATTTTTAATATTAATAAATTAGTAT
* *** * * * * ** * **** * * *
3761750 T-TTTAATCAGAAAAAATCATTTTATG-AGA-AAACAA--AGATTAT-A-ATGATTTGAGATTGA
1 TATTTTATTTCAAATAAGC-TTATATGAACAGAAACAATTATTTTATGACA-AAACAAAAAGTCA
** * * * * * * *
3761808 T-A-TTTGTTCAAATAATCATAACTATTTGAACTAGTTCAAAAAATAGCTTT--AGTT-TTT-A-
64 TAACAAT-TTAAAATAA--ATAATTA-TTCAAATAG-TC-ATAACTA--TTTAAACTTATTTGAT
* ** ** * ** ***
3761866 AATC-TCTTGCTTATT--AAT-TTTTGAAATATTAATAAAATAATATT-AT----------
121 AAACAGATTTATTTTTAAAATCTTTT-ACTTATTAAT-TTTTAATATTAATAAATTAGTAT
** * * * * * * * * *
3761912 ---TTTATTTCGGATAAGTTTTTATGAACTGAAACAATTTTTTTATGATAACATAAAAAGTTAGA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATA
** * ** * * * * * * * *
3761974 ACAATTTGGAGTGGATAATTGTTCTAATAGTCTTAACTATTTGAACTGATTTGGTAAATAAATTT
66 ACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATTT
* * * * * *
3762039 ATTTTTTAACTCTCTTAGTTATTAATTTTTTGAATATTATTAAATTAATAT
131 ATTTTTAAAATCTTTTACTTATTAA-TTTTT-AATATTAATAAATTAGTAT
* * * * *
3762090 TATTTAAATTT-GAATAAGCTTGTATGAA-AGAAAACAATTAGTTTATGA-AAAA-ATAAAGATC
1 TATTT-TATTTCAAATAAGCTTATATGAACAG-AAACAATTATTTTATGACAAAACAAAAAG-TC
* * * * * * * *
3762151 ATAACGATTTGATATAGATAATTGTTCAAATAATCATAATTATTTGAACTGT-TCTTG-TAAACA
63 ATAACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACT-TAT-TTGATAAACA
* * * * * *
3762214 GGTTTAGTTCTT-AAA---TTT-CTTATTAATTTTCAAAATATTAAGATATCAGTAT
126 GATTTA-TTTTTAAAATCTTTTACTTATTAATTTT--TAATATTAATAAATTAGTAT
* ** * ** * * * *
3762266 TATCTTATTTTGAATAA-TTTCCCATGAA-TGAAACAATTGTTTTATAAGAAAACAAAAAGTCAT
1 TATTTTATTTCAAATAAGCTT-ATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
** * * * * * *
3762329 AATGATTTAAAATAGATAATTGTTCAAATAGAT-ATGACTATTTGAACTTATTTGGTAAATAGAT
65 AACAATTTAAAATAAATAATTATTCAAATAG-TCATAACTATTTAAACTTATTTGATAAACAGAT
* * ** *
3762393 TTATTTTTTATATCTACTACATATTAATTTTTAGAATATTAATAAATTAGTAT
129 TTATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
** * * ** * *
3762446 TATTTTATTTTGAATAAACTTGTATGATTAGAAACAATTGTTTTATGACAAAAC-AAAAGATTAT
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAG-TCAT
* * * * * * * * * *
3762510 AACTATTTGAAATAAATAATTGTTCAAACAATCATAATTATTTGAACTTACTTGGTAAACTGATT
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATT
* * * * *
3762575 TATTTTTTAAATTTTTTAGTTATTAATTTTTGAAATATTAATAAACTAGCAT
130 TATTTTTAAAATCTTTTACTTATTAATTTTT--AATATTAATAAATTAGTAT
** * * ** *
3762627 TATTTTATTTCGTATACA-CTTGTATAAACAGAAACAATTGGTTTATGACAAAATAAAAAGTCAT
1 TATTTTATTTCAAATA-AGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
* * * * * *
3762691 AACTAGTTAGAATAAATAATTATTTAAATAGTCTTAACTATTTAAA-TGTGTTT-A-AAAGCAGA
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACT-TATTTGATAAA-CAGA
*
3762753 TTTATTTTTAAAAT-TTTTAATTATTAATTTTTTAATATTAATAAATTTA-TAT
128 TTTATTTTTAAAATCTTTTACTTATTAA-TTTTTAATATTAATAAA-TTAGTAT
* * * * * * * *
3762805 TATTTTATTTGAAATAAGGTTGTATAAATAGAAATAATTGTTTTATGACAAAAC-AAAAGGCTAT
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTC-AT
* * * * * *
3762869 AATAATTTAAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTA-TTCAGTAAATAGAT
65 AACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGA-TAAACAGAT
*
3762933 TCATTTTT-AAAT-TTCTTA-TTCATTAATTTTTAGAATATTAATAAATTAGTAT
129 TTATTTTTAAAATCTT-TTACTT-ATTAATTTTT--AATATTAATAAATTAGTAT
** * * * * * *
3762985 TATTTTATTTTGAATAAGGC-TATATGAACTGATACAATTGTTTTATTACAAAATAAAATGTCAT
1 TATTTTATTTCAAATAA-GCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
* * * * *
3763049 AACAATTTTAAATAATGATTTTAAATAGATAATTACTCAAAAAGTTATGATTATTTAAA--TATG
65 AACAA-TTT--A-AA--A---T--A-A-ATAATTATTCAAATAGTCATAACTATTTAAACTTAT-
* * *** * *
3763112 TTCAATAAACATATTTA-TTTTAAAATCTTTTACTTATTAATTGCCAAAATATTAATCAATTAAT
116 TT-GATAAACAGATTTATTTTTAAAATCTTTTACTTATTAATT--TTTAATATTAATAAATTAGT
3763176 AT
178 AT
* * * * * * * *
3763178 AATTTTAATTCAAATAAGCTTGTATGAATAAAAACAATTATTTTATGA-TAAA-AGAAAGTTATA
1 TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATA
** *
3763241 ATGATTTGAAATAAATAATT
66 ACAATTTAAAATAAATAATT
3763261 TCTTAGCCTT
Statistics
Matches: 4203, Mismatches: 1070, Indels: 729
0.70 0.18 0.12
Matches are distributed among these distances:
157 3 0.00
158 8 0.00
159 8 0.00
160 31 0.01
161 30 0.01
162 24 0.01
163 24 0.01
164 22 0.01
165 20 0.00
166 39 0.01
167 18 0.00
168 19 0.00
169 16 0.00
170 17 0.00
171 11 0.00
172 8 0.00
173 6 0.00
174 4 0.00
175 122 0.03
176 238 0.06
177 188 0.04
178 151 0.04
179 150 0.04
180 925 0.22
181 1092 0.26
182 459 0.11
183 115 0.03
184 77 0.02
185 118 0.03
186 61 0.01
187 36 0.01
188 12 0.00
189 8 0.00
190 14 0.00
191 15 0.00
192 9 0.00
193 100 0.02
194 5 0.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.42
Consensus pattern (179 bp):
TATTTTATTTCAAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCATA
ACAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTTGATAAACAGATTT
ATTTTTAAAATCTTTTACTTATTAATTTTTAATATTAATAAATTAGTAT
Found at i:3758185 original size:361 final size:361
Alignment explanation
Indices: 3757444--3761733 Score: 2591
Period size: 361 Copynumber: 11.9 Consensus size: 361
3757434 TGACAAATAC
* * * * * * *
3757444 TATTTTATTCCAAACAAACTTATATGAATAGAAACAACTGTTTTATGACAAAACAAAAAATCATA
1 TATTTTATTTCGAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTCATA
* ** * * ** ** ** * *
3757509 ACGATTCAAAATAAATAATTGTTCAAATACTCCTAACTATTTGGGCTCGTTTGGTAAACAGATTT
66 ACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTATTTGATAAACAAATTT
* * * ** * * *
3757574 ATTTTTAAAATTTTTTACTTATTAATATTTGGAATTTTTATAAATTAGTATTATTTTATTCCAAA
131 ATTTTTTAAATCTCTTACTTATTAAT-TTTTAAATATTAATAAATTAGTATTATTTTATTTCAAA
* * * * * * *
3757639 TAAGCTTGTATAAACAGAAATAATTAGTTTATGACAAAATAAAAAGGTCATAATGATTTGAAATA
195 TAAGCTTGTATGAACAAAAATAATTATTTTATGATAAAA-CAAAAGGTTATAACGATTTGAAATA
* *** * * *
3757704 AATAATTATTTAAATAGTCATAATTATTTAAACTCACTTGGTAAATAGATTTATTTTTTAAATCT
259 AATAATTATTTAAATAGTCATAATTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCT
* * * * * *
3757769 TTTACTTATTAATTTTTAGACTTTTAGTAAATTAATAT
324 CTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
* *
3757807 TATTTTA-ATCTGAATAAGCTTATATGAACAGAAACAATTATTTTATGACAAAACAAAAAGTCAT
1 TATTTTATTTC-GAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTCAT
* * * * * * *
3757871 AACAAGTTGAAATAAATAATTACTCAAATAGTTATAACAATTTAAACTTATTTAATAAATAGA-T
65 AACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTATTTGATAAACAAATT
* * * * *
3757935 AATCTTTTAAATCTTTTATTTATTAATTATCTT-AATATTAATAAATTTGTATTATTTTATTTCA
130 TATTTTTTAAATCTCTTACTTATTAATT-T-TTAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * * * * *
3757999 AATAAGCTTATATGAGCAAAAAAAATCATTTTATGATGAAACAAAAGCTTATAGCAATTTCAAAT
193 AATAAGCTTGTATGAACAAAAATAATTATTTTATGATAAAACAAAAGGTTATAACGATTTGAAAT
* * * * *
3758064 AGATAATTGTTTAAATAGTCATAATTATTTAAACATGTTTGATAAATAAATTTATTTTTTAAATC
258 AAATAATTATTTAAATAGTCATAATTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATC
* ** *
3758129 TCTTAATTATTAATTTTTGGAATATTAATAACTTAGTAT
323 TCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
* * * * *
3758168 TATTTTATTTCGAATAAGCTTATATGAACTGAAATAATTTTTTTATGACAAAATAAAATGTCATA
1 TATTTTATTTCGAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTCATA
* * * *
3758233 ACAATTTAAAATAAATAATTATTCAAA-A-TGAT---TATTTG-ATTTAGTTTGATAAACATATT
66 ACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTA-TTTGATAAACAAATT
* * * ** * *
3758292 TATTTTTAAAATTTTTTACTTATTAATTGTCAAAATATTAATAAATTA-TATTATTTGA-ATCTA
130 TATTTTTTAAATCTCTTACTTATTAATT-TTTAAATATTAATAAATTAGTATTATTTTATTTC-A
* * * * * * *
3758355 AAAAAGCTTGTATGAACAGAAACT-ATTATTTTATAATAGAACAAAAAGTCATAATGATTTGAAA
193 AATAAGCTTGTATGAACA-AAAATAATTATTTTATGATAAAACAAAAGGTTATAACGATTTGAAA
* * * *
3758419 TAAATAATTACTTAAATGGTCATAACTT-TTTGAACTAT-TTTAATAAACATATTTA-TTTTTAA
257 TAAATAATTATTTAAATAGTCATAA-TTATTTGAACT-TGTTTGATAAACAAATTTATTTTTTAA
* * *
3758481 A-ATC-T-CTTATTAATTTTTAAAATATTAGTAGATTAGTAT
320 ATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
** * * * * * * *
3758520 TATTTTATTTTAAACAAACTTATATGAATAAAAAC-ATTTTTTTATGA-AAAAAATAAAAGGTTA
1 TATTTTATTTCGAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACA-AAAA-GTCA
* * * * * * ** * *
3758583 TAACAATTTAAAATAGATAATTATTCAAATAATCATAATTATTTGAACTGATAAGGTAAAGAGAA
64 TAACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTATTTGATAAACA-AA
* * *
3758648 -TTATTTTTTAAA--T-AT-CTTATTAATTTTAAAATATTAATAAATTCA-TTTTATTTTATATT
128 TTTATTTTTTAAATCTCTTACTTATTAATTTTTAAATATTAATAAATT-AGTATTATTTTAT-TT
* * * * * * *
3758707 -GAATAAGCTAGTATGAATTGAAAAA-AATTATTTTATGACAAGACAGAAGATCT-TAACGATTT
191 CAAATAAGCTTGTATGAA--CAAAAATAATTATTTTATGATAAAACAAAAGGT-TATAACGATTT
* * * * **
3758769 GAAATAGAA-AATTATTTATATAGTCTTAAATATTTGAA-TTGGTTCGGCAAACAAATTTATTTT
253 GAAATA-AATAATTATTTAAATAGTCATAATTATTTGAACTT-GTTTGATAAACAAATTTATTTT
* * * * * *
3758832 TTAAATCTCTCAGTTATTAATTTTTGAAATTTTATTATATTAGTAT
316 TTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
* * * * * * **
3758878 TATTTTATTTTGAATAAACTTGTATGTACAGAAATAATTCTTTTATGACAAAATGAAAAG-CTAT
1 TATTTTATTTCGAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTC-AT
* * * * * * * * *
3758942 AACAATTTGAAGTATATAATTGTTAAAATAGTCATAGCTAATT-AAATTGATTTGGTAAACAAAT
65 AACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTT-ATTTGATAAACAAAT
* *
3759006 TTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTTATAAATTAGTATTATTTTA-TTCT
129 TTATTTTTTAAATCTCTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTTC-
* * * * * ** * * * *
3759070 AAATAAACTTGTATGATGA-AAAAACACTTGTTATATGACCAAACAAAAGATAATAATGATTTAA
192 AAATAAGCTTGTATGA--ACAAAAATAATTATTTTATGATAAAACAAAAGGTTATAACGATTTGA
* * * * * ***
3759134 AATAGATAATTATTTGTTGAAAT-GATCATAACTATTTGAA-TTGATTTGGTAAATAGATTCGCT
255 AATAAATAATTA--T-TT-AAATAG-TCATAATTATTTGAACTTG-TTTGATAAACAAATTTATT
* ** * * *
3759197 TTTTAAATCACTTACTT-TTTTTTTTTAGAATAGTAAGAAATTAGTAT
314 TTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
* * * * * * * *
3759244 TATTTTATTTTGAATAAACTTGTATAAACTGAAAAAATTATTTTATGACAAAAGAAAAA-TCATA
1 TATTTTATTTCGAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTCATA
** * * * * * * * *
3759308 ATGATTTTAAATAGACT-ATTGTTCAAATAGTCATAATTATTT-AAGTTTATTCGACAAACAAAT
66 ACAATTTGAAATA-AATAATTATTCAAATAGTTATAACTATTTGAA-CTTATTTGATAAACAAAT
* *
3759371 TTATTTTTTTTAAA-CTCTTACTTAATAATTTTTCAAATATTAAGAAATTAGTATTATTTTATTT
129 TTA--TTTTTTAAATCTCTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTT
** * ** * * * *
3759435 TGAATAAGCTTTTATGAACTGAAATAATTGTTTTAT-ATCAAAACAAAAGGTT-TAATGTTTTTA
191 CAAATAAGCTTGTATGAACAAAAATAATTATTTTATGAT-AAAACAAAAGGTTATAACGATTTGA
* * ** * * * *
3759498 AATAATTAATTATTTAAATAGTCATAACTATTTGAACCCGTTCGATAAATAGATTAATTTTTTCA
255 AATAAATAATTATTTAAATAGTCATAATTATTTGAACTTGTTTGATAAACAAATTTATTTTTT-A
* * * * * * *
3759563 AATCTTTTGCGTATTAATTTTTCAAATGTTAGTAAATTTGTAT
319 AATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
** * * * * * * * *
3759606 TATTTT-TAACTAAATAAGCTTCTATGATCAAAAACTATTGTTTTATGATAAAACAAAGA-TCTT
1 TATTTTATTTC-GAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTCAT
* ** * * * * * *
3759669 AACAATTTGAGATTTATAATTGTTTAAATAGTAATAATTATTTGAA-TTGGTTT-AGTTAACAAA
65 AACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTT-ATTTGA-TAAACAAA
*
3759732 TTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTC
128 TTTATTTTTTAAATCTCTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTTC
* ** * * *
3759797 AAATAAGCTTGTATG-A-TAAAAT-A--A--CCAT--T------AAA-GTCATGACGATTTGAAC
192 AAATAAGCTTGTATGAACAAAAATAATTATTTTATGATAAAACAAAAGGTTATAACGATTTGAAA
** ** * ** * * **
3759846 TTCATAAACATTGAAATAACCATAATTATTTTAAC-CGATTCAATAAACAAATTTATTTTTTAAA
257 TAAATAATTATTTAAATAGTCATAATTATTTGAACTTG-TTTGATAAACAAATTTATTTTTTAAA
* * ** *
3759910 TTTGTTACTTATTAATTTAGAAAATATTAATAAATTAATAT
321 TCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
* * * * * * *
3759951 TATTTTA-TTCCATATAAGCTTGTATTAATTA-AAACAATTGTTTTTTTGACAAATC-AAATGAT
1 TATTTTATTTCGA-ATAAGCTTATATGAA-CAGAAACAATTG-TTTTATGACAAAACAAAAAG-T
* * * * * * * * * *
3760013 TATAACGATTTTAACTAGATAATTATTCAAATAGTAATAACTATTTAAACTTGTTTGATAAATAG
62 CATAACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTATTTGATAAACAA
* * * * * * * *
3760078 A-TT-TTTTTAAAATATTTTTCTTATTAATTTTCTTAATGTTAATAAATTGGTATTAATTTATTT
127 ATTTATTTTTTAAATCTCTTACTTATTAATTTT-TAAATATTAATAAATTAGTATTATTTTATTT
** * * *** * * * * * *
3760141 TGAATAAACTTGTACGAATTGAAACAATTATTTTTTGACT-AAACAAAAAGTCATAGCAATTTGA
191 CAAATAAGCTTGTATGAACAAAAATAATTATTTTATGA-TAAAACAAAAGGTTATAACGATTTGA
* ** ** * ** *
3760205 AATAGATAATTATTCT-AATAGTTTTAACCAATTGAACTAATTAGATAAACAAATTTATTTTTTA
255 AATAAATAATTATT-TAAATAGTCATAATTATTTGAACTTGTTTGATAAACAAATTTATTTTTTA
* * *
3760269 AATCTTTTACTTATTAATTTTTAAAATATTATTAAATTAATAT
319 AATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
* * ** * *
3760312 TATTTTATTCCGAATAAGCTTGTACAAAC-GAAACAATTGTTTTACGACAAAAGAAAATA-TCAT
1 TATTTTATTTCGAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAA-AGTCAT
* * * * ** **
3760375 AACAATTTGAAATAGATAATTATTCATATAGTCT-TAATTATTTGAAC-TAGCTTGGCAATTAAA
65 AACAATTTGAAATAAATAATTATTCAAATAGT-TATAACTATTTGAACTTA-TTTGATAAACAAA
* * ** * * * * *
3760438 TTTA-TCTTTAAATTTTCTTGGTTATTAAGTTTCAGAATATTATTAAATTAGTACTATTTTA-GT
128 TTTATTTTTTAAA-TCTCTTACTTATTAATTTTTA-AATATTAATAAATTAGTATTATTTTATTT
** * * * * * * * *
3760501 CAAAATAAAATAGTATAAACAGAACTAATTATTTGATGACAAAATAAAAGGTTATAACAATTTGA
191 C-AAATAAGCTTGTATGAACAAAAATAATTATTTTATGATAAAACAAAAGGTTATAACGATTTGA
* * * * * * ***
3760566 AATATATAATTATTCAAATAGTCAAAATTATTTGAAATAGTTTGGTAAACAAATTTGCCTTTTAA
255 AATAAATAATTATTTAAATAGTCATAATTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAA
* *
3760631 ATCTCTT--TTGATTAATTTTGT-AAATATTGATCAATTAGTAT
320 ATCTCTTACTT-ATTAATTTT-TAAAATATTAATAAATTAGTAT
* * * * * * *
3760672 TATTTTATTTCGAACAAACTTATACT-AACAAAAATAATTGGTTTATGACAAAATAAAAAGTAAT
1 TATTTTATTTCGAATAAGCTTATA-TGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTCAT
** * ** * ** *
3760736 AATGATTTGAAATATATAATTGCTCAAATAGTTATAA-TCATTTAAACTGGTTTGGA-AAATGAA
65 AACAATTTGAAATAAATAATTATTCAAATAGTTATAACT-ATTTGAACTTATTT-GATAAA-CAA
* * * * *
3760799 A-TTATTTTCTAAATCTCTTACTTATAAATTTTTAAAATATTAAT-AATTAGTTTTATTCTATAA
127 ATTTATTTTTTAAATCTCTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTATTTTAT-T
* * * * * * * * *
3760862 T-GAATAAGCTGGTATGAGCTAAAATAATTATTTTATAATAAAACAAAAGATCATAACAATTTAA
190 TCAAATAAGCTTGTATGAACAAAAATAATTATTTTATGATAAAACAAAAGGTTATAACGATTTGA
* ** * * * * * * *
3760926 AATAAATAATTATTCATGTAATCTTAACTATTTGAA-TTGGCTCGACAAACGACA-TTATTTTTT
255 AATAAATAATTATTTAAATAGTCATAATTATTTGAACTT-GTTTGATAAAC-AAATTTATTTTTT
* * * *
3760989 AAATCTCTTAATTATTAATTTTCAAAATATTATTAAATTATTATTAT
318 AAATCTCTTACTTATTAATTTTTAAAATATTAAT-AA--ATTAGTAT
* * * * * * * * *
3761036 TATTTTATTTCGAATAAGCTTGCT-TGATCAAAAACAAAATGTTTTATTATAGAACAAAAGGTTA
1 TATTTTATTTCGAATAAGCTT-ATATGAACAGAAAC-AATTGTTTTATGACAAAACAAAAAGTCA
* * ** * **
3761100 TAACAATTTAAAATATATAATTATTCAAATAACTATAATTATTTGAACTGGTTT-AGTAAACAAA
64 TAACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTATTTGA-TAAACAAA
* *
3761164 TTTATTTTTTTTAAA--TC-T-CTTATTAATTCTTGAAATATTAATAAATTAGAATTATTTTATT
128 TTTA--TTTTTTAAATCTCTTACTTATTAATT-TTTAAATATTAATAAATTAGTATTATTTTATT
* * ** * * * *
3761225 TCGAATAAGCTTGTATGTTA-AAAACCAATTGTTTTATAACAAAACAAAAAGGTAATAACGATTT
190 TCAAATAAGCTTGTATG-AACAAAAATAATTATTTTATGATAAAAC-AAAAGGTTATAACGATTT
* * * * **
3761289 GAAATAAATAATTATTCAAGTGGTCATAATTATTT-AAATTGATTT-AGTAAACTGATTTATTTT
253 GAAATAAATAATTATTTAAATAGTCATAATTATTTGAACTTG-TTTGA-TAAACAAATTTATTTT
* *
3761352 TTATATCTCTTACTTATTAATTTTTAAAATATTAATAAAATAGTAT
316 TTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTAT
* * * * *
3761398 TATTTTATTTTGGATAAAG-TTTTATGAACTA-AAACAATTGTTTTATGACAATAC-AAAAGATT
1 TATTTTATTTCGAAT-AAGCTTATATGAAC-AGAAACAATTGTTTTATGACAAAACAAAAAG-TC
** * * * * ** * ** * *
3761460 ATAATGATTTTAAATAGATAATTGTTTAAATAGTTATAACTATTTGAGTTTGTTCAATAAATATA
63 ATAACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTATTTGATAAACAAA
* * *
3761525 TTTATTTTTTCAAATCTCTTGCTTATTAATTTTTTGAATATTAATAAATTAGTATTAGTTTATTT
128 TTTATTTTTT-AAATCTCTTACTTATTAA-TTTTTAAATATTAATAAATTAGTATTATTTTATTT
* * * ** * * * *
3761590 CGAATAAGTTTATATGAACTGAAACAATTA--TTAT-ATAACTAACGAAGAAGGTCAAAACAATT
191 CAAATAAGCTTGTATGAACAAAAATAATTATTTTATGATAA--AAC-AA-AAGGTTATAACGATT
** * * * * *
3761652 TGAAA-AAGATAATTATTCT-AATAGTTTTAACTATTTGAACTGGTTCGATAAACACATTAATTT
252 TGAAATAA-ATAATTATT-TAAATAGTCATAATTATTTGAACTTGTTTGATAAACAAATTTATTT
*
3761715 TTTAAATCTCTTATTTATT
315 TTTAAATCTCTTACTTATT
3761734 TTTATCCAAA
Statistics
Matches: 3030, Mismatches: 719, Indels: 355
0.74 0.18 0.09
Matches are distributed among these distances:
344 1 0.00
345 127 0.04
346 71 0.02
347 51 0.02
348 4 0.00
350 6 0.00
351 15 0.00
352 105 0.03
353 38 0.01
354 77 0.03
355 28 0.01
356 111 0.04
357 74 0.02
358 121 0.04
359 92 0.03
360 246 0.08
361 699 0.23
362 269 0.09
363 209 0.07
364 242 0.08
365 244 0.08
366 137 0.05
367 63 0.02
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Consensus pattern (361 bp):
TATTTTATTTCGAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAAGTCATA
ACAATTTGAAATAAATAATTATTCAAATAGTTATAACTATTTGAACTTATTTGATAAACAAATTT
ATTTTTTAAATCTCTTACTTATTAATTTTTAAATATTAATAAATTAGTATTATTTTATTTCAAAT
AAGCTTGTATGAACAAAAATAATTATTTTATGATAAAACAAAAGGTTATAACGATTTGAAATAAA
TAATTATTTAAATAGTCATAATTATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCT
TACTTATTAATTTTTAAAATATTAATAAATTAGTAT
Found at i:3758188 original size:181 final size:181
Alignment explanation
Indices: 3757484--3761733 Score: 2517
Period size: 181 Copynumber: 23.6 Consensus size: 181
3757474 GAAACAACTG
* * * ** * * * * *
3757484 TTTTATGACAAAACAAAAAATCATAACGATTCAAAATAAATAATTGTTCAAATACTCCTAACTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
** * * * * * * * ** * *
3757549 TTGGGCTCGTTTGGTAAACAGATTTATTTTTAAAATTTTTTACTTATTAATATTTGGAATTTTTA
66 TTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAA
* * * * *
3757614 TAAATTAGTATTATTTTATTCCAAATAAGCTTGTATAAACAGAAATAATTA
131 TAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * ** * *
3757665 GTTTATGACAAAATAAAAAGGTCATAATGATTTGAAATAAATAATTATTTAAATAGTCATAATTA
1 TTTTATGACAAAA-CAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* *** * * * * * * *
3757730 TTTAAACTCACTTGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAGACTTTTA
65 TTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTA
* * * * * *
3757795 GTAAATTAATATTATTTTA-ATCTGAATAAGCTTATATGAACAGAAACAATTA
130 ATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAACAAAAAAAATTA
* * * * * **
3757847 TTTTATGACAAAACAAAA-AGTCATAACAAGTTGAAATAAATAATTACTCAAATAGTTATAACAA
1 TTTTATGACAAAACAAAAGA-TTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* * * * * * * * *
3757911 TTTAAACTTATTTAATAAATAGA-TAATCTTTTAAATCTTTTATTTATTAATTATCTT--AATAT
65 TTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATT-T-TTAAAATAT
* * * * *
3757973 TAATAAATTTGTATTATTTTATTTCAAATAAGCTTATATGAGCAAAAAAAATCA
128 TAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
** * * * * *
3758027 TTTTATGATGAAACAAAAGCTTATAGCAATTTCAAATAGATAATTGTTTAAATAGTCATAATTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
* * * * **
3758092 TTAAACATGTTTGATAAATAAATTTATTTTTTAAATCTCTTAATTATTAATTTTTGGAATATTAA
66 TTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAA
* * ** * *
3758157 TAACTTAGTATTATTTTATTTCGAATAAGCTTATATGAACTGAAATAATTT
131 TAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * *
3758208 TTTTATGACAAAATAAAATG-TCATAACAATTTAAAATAAATAATTATTC-AA-A---ATGATTA
1 TTTTATGACAAAACAAAA-GATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* * * * * * *
3758267 TTTG-ATTTAGTTTGATAAACATATTTATTTTTAAAATTTTTTACTTATTAATTGTCAAAATATT
65 TTTGAACTT-GTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATT
* * * * * **
3758331 AATAAATTA-TATTATTTGA-ATCTAAAAAAGCTTGTATGAACAGAAACTATTA
129 AATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAACAAAAAAAATTA
* * * * ** * *
3758383 TTTTATAATAGAACAAAA-AGTCATAATGATTTGAAATAAATAATTACTT-AAATGGTCATAACT
1 TTTTATGACAAAACAAAAGA-TTATAACAATTTGAAATAGATAATTA-TTCAAATAGTCATAA-T
* * *
3758446 T-TTTGAACTAT-TTTAATAAACATATTTA-TTTTTAAA-ATC-T-CTTATTAATTTTTAAAATA
63 TATTTGAACT-TGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATA
* * ** * * * * * *
3758505 TTAGTAGATTAGTATTATTTTATTTTAAACAAACTTATATGAA-TAAAAACATTT
127 TTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * *
3758559 TTTTATGAAAAAAATAAAAGGTTATAACAATTTAAAATAGATAATTATTCAAATAATCATAATTA
1 TTTTATG-ACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
** * * *
3758624 TTTGAAC-TGATAAGGTAAAGAGAA-TTATTTTTTAAA--T-AT-CTTATTAA-TTTTAAAATAT
65 TTTGAACTTG-TTTGATAAACA-AATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATAT
* * **
3758682 TAATAAATTCA-TTTTATTTTATATT-GAATAAGCTAGTATGAATTGAAAAAAATTA
128 TAATAAATT-AGTATTATTTTAT-TTCGAATAAGCTTGTATGAA-CAAAAAAAATTA
* * * * * * * *
3758737 TTTTATGACAAGACAGAAGATCT-TAACGATTTGAAATAGAAAATTATTTATATAGTCTTAAATA
1 TTTTATGACAAAACAAAAGAT-TATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* ** * * * *
3758801 TTTGAA-TTGGTTCGGCAAACAAATTTATTTTTTAAATCTCTCAGTTATTAATTTTTGAAATTTT
65 TTTGAACTT-GTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATT
* * * * * * * *
3758865 ATTATATTAGTATTATTTTATTTTGAATAAACTTGTATGTACAGAAATAATTC
129 AATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * * * **
3758918 TTTTATGACAAAATGAAAAG-CTATAACAATTTGAAGTATATAATTGTTAAAATAGTCATAGCTA
1 TTTTATGACAAAA-CAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* * * * *
3758982 ATT-AAATTGATTTGGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATT
65 TTTGAACTTG-TTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATT
* * * ** * *
3759046 TATAAATTAGTATTATTTTA-TTCTAAATAAACTTGTATGATGAAAAAACACTTG
129 AATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAACAAAAAA-AATTA
* * * ** * *
3759100 TTATATGACCAAACAAAAGATAATAATGATTTAAAATAGATAATTATTTGTTGAAAT-GATCATA
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTA----TTCAAATAG-TCATA
* * * * *** * ** *
3759164 ACTATTTGAA-TTGATTTGGTAAATAGATTCGCTTTTTAAATCACTTACTT-TTTTTTTTTAGAA
61 ATTATTTGAACTTG-TTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAA
* * * * * **
3759227 TAGTAAGAAATTAGTATTATTTTATTTTGAATAAACTTGTATAAACTGAAAAAATTA
125 TATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * ** * *
3759284 TTTTATGACAAAAGAAAA-ATCATAATGATTTTAAATAGACT-ATTGTTCAAATAGTCATAATTA
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGA-TAATTATTCAAATAGTCATAATTA
* * * *
3759347 TTT-AAGTT-TATTCGACAAACAAATTTATTTTTTTTAAA-CTCTTACTTAATAATTTTTCAAAT
65 TTTGAACTTGT-TT-GATAAACAAATTTA--TTTTTTAAATCTCTTACTTATTAATTTTTAAAAT
* * * ** * *
3759409 ATTAAGAAATTAGTATTATTTTATTTTGAATAAGCTTTTATGAACTGAAATAATTG
126 ATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* *** * * *
3759465 TTTTAT-ATCAAAACAAAAGGTT-TAATGTTTTTAAATA-ATTAATTATTTAAATAGTCATAACT
1 TTTTATGA-CAAAACAAAAGATTATAACAATTTGAAATAGA-TAATTATTCAAATAGTCATAATT
** * * * * * * * * *
3759527 ATTTGAACCCGTTCGATAAATAGATTAATTTTTTCAAATCTTTTGCGTATTAATTTTTCAAATGT
64 ATTTGAACTTGTTTGATAAACAAATTTATTTTTT-AAATCTCTTACTTATTAATTTTTAAAATAT
* * ** * * * ** *
3759592 TAGTAAATTTGTATTATTTT-TAACTAAATAAGCTTCTATGATCAAAAACTATTG
128 TAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAACAAAAAAAATTA
* * ** * * *
3759646 TTTTATGATAAAAC-AAAGATCT-TAACAATTTGAGATTTATAATTGTTTAAATAGTAATAATTA
1 TTTTATGACAAAACAAAAGAT-TATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
*
3759709 TTTGAA-TTGGTTT-AGTTAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATAT
65 TTTGAACTT-GTTTGA-TAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATAT
* * *
3759772 TAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATG------ATAAA--A
128 TAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* ** * * * * ** ** * **
3759818 ---TA--AC--CATTAAAG-TCATGACGATTTGAACTTCATAAACATTGAAATAACCATAATTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
* *** ** * * **
3759875 TTTAACCGATTCAATAAACAAATTTATTTTTTAAATTTGTTACTTATTAATTTAGAAAATATTAA
66 TTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAA
* * * ** * *
3759940 TAAATTAATATTATTTTA-TTCCATATAAGCTTGTATTAATTAAAACAATTGT
131 TAAATTAGTATTATTTTATTTCGA-ATAAGCTTGTATGAACAAAAAAAATT-A
* * * * * * * *
3759992 TTTTTTGACAAATCAAATGATTATAACGATTTTAACTAGATAATTATTCAAATAGTAATAACTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
* * * * * * * * *
3760057 TTAAACTTGTTTGATAAATAGA-TT-TTTTTAAAATATTTTTCTTATTAATTTTCT-TAATGTTA
66 TTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTT-TAAAATATTA
* * * * * *** *
3760119 ATAAATTGGTATTAATTTATTTTGAATAAACTTGTACGAATTGAAACAATTA
130 ATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * * ** **
3760171 TTTTTTGACTAAACAAAA-AGTCATAGCAATTTGAAATAGATAATTATTCTAATAGTTTTAACCA
1 TTTTATGACAAAACAAAAGA-TTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* ** * *
3760235 ATTGAACTAATTAGATAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTA
65 TTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTA
* * * ** * * *
3760300 TTAAATTAATATTATTTTATTCCGAATAAGCTTGTACAAAC-GAAACAATTG
130 ATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * * *
3760351 TTTTACGACAAAAGAAAATATCATAACAATTTGAAATAGATAATTATTCATATAGTCTTAATTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
* * ** ** * * ** * * *
3760416 TTGAACTAGCTTGGCAATTAAATTTA-TCTTTAAATTTTCTTGGTTATTAAGTTTCAGAATATTA
66 TTGAACTTGTTTGATAAACAAATTTATTTTTTAAA-TCTCTTACTTATTAATTTTTAAAATATTA
* * * * ** * * * **
3760480 TTAAATTAGTACTATTTTA-GTCAAAATAAAATAGTATAAACAGAACTAATTA
130 ATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAACAAAAAAAATTA
* * * * *
3760532 TTTGATGACAAAATAAAAGGTTATAACAATTTGAAATATATAATTATTCAAATAGTCAAAATTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
* * * ***
3760597 TTGAAATAGTTTGGTAAACAAATTTGCCTTTTAAATCTCTT--TTGATTAATTTTGT-AAATATT
66 TTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTT-ATTAATTTT-TAAAATATT
* * * * * * *
3760659 GATCAATTAGTATTATTTTATTTCGAACAAACTTATACT-AACAAAAATAATTG
129 AATAAATTAGTATTATTTTATTTCGAATAAGCTTGTA-TGAACAAAAAAAATTA
* * * ** * ** * *
3760712 GTTTATGACAAAATAAAA-AGTAATAATGATTTGAAATATATAATTGCTCAAATAGTTATAATCA
1 TTTTATGACAAAACAAAAGA-TTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* * * * *
3760776 TTTAAACTGGTTTGGA-AAATGAAA-TTATTTTCTAAATCTCTTACTTATAAATTTTTAAAATAT
65 TTTGAACTTGTTT-GATAAA-CAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATAT
* * * * * * *
3760839 TAAT-AATTAGTTTTATTCTATAAT-GAATAAGCTGGTATGAGCTAAAATAATTA
128 TAATAAATTAGTATTATTTTAT-TTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * * ** * * *
3760892 TTTTATAATAAAACAAAAGATCATAACAATTTAAAATAAATAATTATTCATGTAATCTTAACTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
* * * * * *
3760957 TTGAA-TTGGCTCGACAAACGACA-TTATTTTTTAAATCTCTTAATTATTAATTTTCAAAATATT
66 TTGAACTT-GTTTGATAAAC-AAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATT
* * * * *
3761020 ATTAAATTATTATTATTATTTTATTTCGAATAAGCTTGCT-TGATCAAAAACAAAATG
129 AAT-AA--ATTAGTATTATTTTATTTCGAATAAGCTTG-TATGAACAAAAA-AAATTA
* * * * * * *
3761077 TTTTATTATAGAACAAAAGGTTATAACAATTTAAAATATATAATTATTCAAATA-ACTATAATTA
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTC-ATAATTA
* * *
3761141 TTTGAACTGGTTT-AGTAAACAAATTTATTTTTTTTAAA--TC-T-CTTATTAATTCTTGAAATA
65 TTTGAACTTGTTTGA-TAAACAAATTTA--TTTTTTAAATCTCTTACTTATTAATTTTTAAAATA
* * ** *
3761201 TTAATAAATTAGAATTATTTTATTTCGAATAAGCTTGTATGTTA-AAAACCAATTG
127 TTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATG-AACAAAAAAAATTA
* * * * * * *
3761256 TTTTATAACAAAACAAAAAGGTAATAACGATTTGAAATAAATAATTATTCAAGTGGTCATAATTA
1 TTTTATGACAAAAC-AAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTA
* ** *
3761321 TTT-AAATTGATTT-AGTAAACTGATTTATTTTTTATATCTCTTACTTATTAATTTTTAAAATAT
65 TTTGAACTTG-TTTGA-TAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATAT
* * * * * * *
3761384 TAATAAAATAGTATTATTTTATTTTGGATAAAG-TTTTATGAACTAAAACAATTG
128 TAATAAATTAGTATTATTTTATTTCGAAT-AAGCTTGTATGAACAAAAAAAATTA
* ** * * * * *
3761438 TTTTATGACAATACAAAAGATTATAATGATTTTAAATAGATAATTGTTTAAATAGTTATAACTAT
1 TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
** ** * * * **
3761503 TTGAGTTTGTTCAATAAATATATTTATTTTTTCAAATCTCTTGCTTATTAATTTTTTGAATATTA
66 TTGAACTTGTTTGATAAACAAATTTATTTTTT-AAATCTCTTACTTATTAATTTTTAAAATATTA
* * * ** *
3761568 ATAAATTAGTATTAGTTTATTTCGAATAAGTTTATATGAACTGAAACAATTA
130 ATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
* * * * * * * * ** *
3761620 TTATATAAC-TAACGAAGAAGGTCAAAACAATTTGAAAAAGATAATTATTCTAATAGTTTTAACT
1 TTTTATGACAAAAC-AA-AAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATT
* * * * *
3761684 ATTTGAACTGGTTCGATAAACACATTAATTTTTTAAATCTCTTATTTATT
64 ATTTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATT
3761734 TTTATCCAAA
Statistics
Matches: 3165, Mismatches: 739, Indels: 329
0.75 0.17 0.08
Matches are distributed among these distances:
164 4 0.00
165 114 0.04
166 5 0.00
167 1 0.00
169 2 0.00
171 3 0.00
174 4 0.00
175 71 0.02
176 150 0.05
177 162 0.05
178 41 0.01
179 146 0.05
180 804 0.25
181 851 0.27
182 458 0.14
183 109 0.03
184 55 0.02
185 121 0.04
186 53 0.02
187 11 0.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (181 bp):
TTTTATGACAAAACAAAAGATTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAATTAT
TTGAACTTGTTTGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAA
TAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAAAAAAAATTA
Found at i:3760605 original size:19 final size:18
Alignment explanation
Indices: 3760560--3760606 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
3760550 GGTTATAACA
*
3760560 ATTTGAAATA-TATAATT
1 ATTTGAAATAGTAAAATT
*
3760577 A-TTCAAATAGTCAAAATT
1 ATTTGAAATAGT-AAAATT
3760595 ATTTGAAATAGT
1 ATTTGAAATAGT
3760607 TTGGTAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 7 0.29
17 2 0.08
18 6 0.25
19 9 0.38
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.40
Consensus pattern (18 bp):
ATTTGAAATAGTAAAATT
Found at i:3762090 original size:14 final size:15
Alignment explanation
Indices: 3762071--3762099 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
3762061 TAATTTTTTG
3762071 AATATTA-TTAAATT
1 AATATTATTTAAATT
3762085 AATATTATTTAAATT
1 AATATTATTTAAATT
3762100 TGAATAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AATATTATTTAAATT
Found at i:3762432 original size:356 final size:357
Alignment explanation
Indices: 3761769--3763062 Score: 986
Period size: 356 Copynumber: 3.6 Consensus size: 357
3761759 GAAAAAATCA
* * * * * *
3761769 TTTTATGAGAAAACAAAGATTATAATGATTTGAGATTGATATTTGTTCAAATAATCATAACTATT
1 TTTTATGA-AAAAAAAAGATTATAACGATTTGAAATAGATAATTGTTCAAATAATCATAATTATT
*** * * **
3761834 TGAACTAGTTC-AAAAAATAGCTTTAGTTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAA
65 TGAACT-GTTCTTGTAAACAGATTTAGTTTTTAAA--T-TTGCTTATTAATTTTCAAAATATTAA
* * ** * * * * *
3761898 TAAAATAATATTATTTTATTTCGGATAAGTTTTTATGAACTGAAACAATTTTTTTATGATAACAT
126 TAAAATAATATTATCTTATTTCGAATAAGTTTCCATGAACTGAAACAATTGTTTTATAAGAAAAC
* ** * * * *
3761963 AAAAAGTTAGAACAATTTGGAGTGGATAATTGTTCTAATAGTCTTAACTATTTGAACTGATTTGG
191 AAAAAGTCAGAACAATTTAAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGG
** * *
3762028 TAAATAAATTTATTTTTTAACTCTCTTAGTTATTAATTTTTTGAATATTATTAAATTAATATTAT
256 TAAATAAATTTATTTTTTAACTCTCTTACATATTAATTTTTAGAATATTAATAAATTAATATTAT
*
3762093 TTAAATTTGAATAAGCTTGTATGA-AAGAAAACAATTAG
321 TTAAATTTGAATAAACTTGTATGATAAG-AAACAATT-G
* *
3762131 -TTTATGAAAAAATAAAGATCATAACGATTTGATATAGATAATTGTTCAAATAATCATAATTATT
1 TTTTATGAAAAAA-AAAGATTATAACGATTTGAAATAGATAATTGTTCAAATAATCATAATTATT
* * * *
3762195 TGAACTGTTCTTGTAAACAGGTTTAGTTCTTAAATTT-CTTATTAATTTTCAAAATATTAA-GAT
65 TGAACTGTTCTTGTAAACAGATTTAGTTTTTAAATTTGCTTATTAATTTTCAAAATATTAATAAA
* *
3762258 ATCAGTATTATCTTATTTTGAATAA-TTTCCCATGAA-TGAAACAATTGTTTTATAAGAAAACAA
130 AT-AATATTATCTTATTTCGAATAAGTTT-CCATGAACTGAAACAATTGTTTTATAAGAAAACAA
* ** * *
3762321 AAAGTCATAATGATTTAAAATAGATAATTGTTCAAATAGAT-ATGACTATTTGAACTTATTTGGT
193 AAAGTCAGAACAATTTAAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAACTGATTTGGT
* *
3762385 AAATAGATTTATTTTTTATA-TCTAC-TACATATTAATTTTTAGAATATTAATAAATTAGTATTA
257 AAATAAATTTATTTTTTA-ACTCT-CTTACATATTAATTTTTAGAATATTAATAAATTAATATTA
* * *
3762448 TTTTATTTTGAATAAACTTGTATGATTAGAAACAATTG
320 TTTAAATTTGAATAAACTTGTATGATAAGAAACAATTG
* * *
3762486 TTTTATGACAAAACAAAAGATTATAACTATTTGAAATAAATAATTGTTCAAACAATCATAATTAT
1 TTTTATGA-AAAA-AAAAGATTATAACGATTTGAAATAGATAATTGTTCAAATAATCATAATTAT
* * * **
3762551 TTGAACT-TACTTGGTAAACTGATTTATTTTTTAAATTTTTTAG-TTATTAATTTTTGAAATATT
64 TTGAACTGTTCTT-GTAAACAGATTTAGTTTTTAAA---TTT-GCTTATTAATTTTCAAAATATT
* ** * * * * * * * *
3762614 AATAAACTAGCATTATTTTATTTCGTATACACTTGT--ATAAACAGAAACAATTGGTTTATGACA
124 AATAAAATAATATTATCTTATTTCGAATA-AGTT-TCCATGAACTGAAACAATTGTTTTATAAGA
* * * * * * * * * *
3762677 AAATAAAAAGTCATAACTAGTTAGAATAAATAATTATTTAAATAGTCTTAACTATTT-AAATG-T
187 AAACAAAAAGTCAGAACAATTTAAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGAT
* * * *
3762740 GTT--TAAA-AGCAGATTTATTTTTAAAAT-TTTTA-ATTATTAATTTTT-TAATATTAATAAAT
252 -TTGGTAAATA--A-ATTTATTTTTTAACTCTCTTACA-TATTAATTTTTAGAATATTAATAAAT
* * ** * *
3762799 TTATATTATTT-TATTTGAAATAAGGTTGTAT-AAATAGAAATAATTG
312 TAATATTATTTAAATTTG-AATAAACTTGTATGATA-AGAAACAATTG
** ** * * * * *
3762845 TTTTATGACAAAACAAAAGGCTATAATAATTTAAAATAGATAATTATTTAAATAGTCATAACTAT
1 TTTTATGA-AAAA-AAAAGATTATAACGATTTGAAATAGATAATTGTTCAAATAATCATAATTAT
* * * * * *
3762910 TTGAACTTATTC-AGTAAATAGATTCA-TTTTTAAATTT-CTTATTCATTAATTTTTAGAATATT
64 TTGAAC-TGTTCTTGTAAACAGATTTAGTTTTTAAATTTGC---TT-ATTAATTTTCAAAATATT
* * * * ** ** * * *
3762972 AATAAATTAGTATTATTTTATTTTGAATAAGGCTATATGAACTGATACAATTGTTTTATTACAAA
124 AATAAAATAATATTATCTTATTTCGAATAAGTTTCCATGAACTGAAACAATTGTTTTATAAGAAA
* * * *
3763037 ATAAAATGTCATAACAATTTTAAATA
189 ACAAAAAGTCAGAACAATTTAAAATA
3763063 ATGATTTTAA
Statistics
Matches: 757, Mismatches: 134, Indels: 86
0.77 0.14 0.09
Matches are distributed among these distances:
355 4 0.01
356 173 0.23
357 126 0.17
358 103 0.14
359 119 0.16
360 28 0.04
361 136 0.18
362 65 0.09
363 2 0.00
364 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.43
Consensus pattern (357 bp):
TTTTATGAAAAAAAAAGATTATAACGATTTGAAATAGATAATTGTTCAAATAATCATAATTATTT
GAACTGTTCTTGTAAACAGATTTAGTTTTTAAATTTGCTTATTAATTTTCAAAATATTAATAAAA
TAATATTATCTTATTTCGAATAAGTTTCCATGAACTGAAACAATTGTTTTATAAGAAAACAAAAA
GTCAGAACAATTTAAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTTGGTAAAT
AAATTTATTTTTTAACTCTCTTACATATTAATTTTTAGAATATTAATAAATTAATATTATTTAAA
TTTGAATAAACTTGTATGATAAGAAACAATTG
Found at i:3765608 original size:21 final size:20
Alignment explanation
Indices: 3765570--3765608 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3765560 TGAATTTTTA
*
3765570 GAAAAAGAAATTTTTGATTT
1 GAAAAAGAAATTTATGATTT
3765590 GAAAAAGAAATTTGATGAT
1 GAAAAAGAAATTT-ATGAT
3765609 GATGAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (20 bp):
GAAAAAGAAATTTATGATTT
Found at i:3767846 original size:24 final size:24
Alignment explanation
Indices: 3767802--3767847 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
3767792 ATGTTTGATT
* *
3767802 ATTGCATATGCTTAGATTAATTAC
1 ATTGCATATGCTTAAAATAATTAC
3767826 ATTGC-TATGCATTAAAATAATT
1 ATTGCATATGC-TTAAAATAATT
3767848 TGGATTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (24 bp):
ATTGCATATGCTTAAAATAATTAC
Found at i:3769038 original size:38 final size:38
Alignment explanation
Indices: 3768996--3769078 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
3768986 TTGAGTTCTG
* *
3768996 TTGGATTAGGATG-CCTAAATTGAGCGGGAGTTTTGCCA
1 TTGGATTAGGATGTAC-AAATTGAGCGGGAATTTTGCCA
*
3769034 TTGGATTAGGATGTACAAATTGAGTGGGAATTTTGCCA
1 TTGGATTAGGATGTACAAATTGAGCGGGAATTTTGCCA
3769072 -TGGATTA
1 TTGGATTA
3769079 ATTAAGGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
37 7 0.17
38 33 0.80
39 1 0.02
ACGTcount: A:0.27, C:0.10, G:0.30, T:0.34
Consensus pattern (38 bp):
TTGGATTAGGATGTACAAATTGAGCGGGAATTTTGCCA
Found at i:3769996 original size:21 final size:20
Alignment explanation
Indices: 3769970--3770043 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 20
3769960 AAATCCAAAA
*
3769970 AAGGGATCGATCCCCCCACAT
1 AAGGGATCGATCCCCCCA-AC
* * *
3769991 AAGGGATCAAT-CACCCAGGC
1 AAGGGATCGATCCCCCCA-AC
* *
3770011 AAGGGATCGATCCCCTCAAGG
1 AAGGGATCGATCCCCCCAA-C
3770032 AAGGGATCGATC
1 AAGGGATCGATC
3770044 GGGTAAGGCT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 15 0.37
21 26 0.63
ACGTcount: A:0.31, C:0.30, G:0.26, T:0.14
Consensus pattern (20 bp):
AAGGGATCGATCCCCCCAAC
Found at i:3771223 original size:178 final size:180
Alignment explanation
Indices: 3770900--3771280 Score: 398
Period size: 178 Copynumber: 2.1 Consensus size: 180
3770890 AAAAACTAAC
* * * * *
3770900 ATAATTGTTTAAATAGTCATAATAATTTGAACTTATTTGGTAAACAGATTTATTTTTTAAATTCT
1 ATAATTGTTCAAATAGTCATAATAATTTAAACTTATTCGATAAACAAATTTATTTTTTAAATTC-
* * *
3770965 TTACTTATTAATTGTCTAAATATTAACAAATTTATATTATTTTAATTAAAACAAGCTTGTATGAA
65 TTACTTATTAATTGTCTAAATATTAACAAATTTAAATTATATTAATTAAAACAAACTTGTATGAA
** * * * *
3771030 TGAAAAAAATTATTTTAAGATAAAACAAAATGTTAAGAGCGATTTGAAATAG
130 ACAAAAAAATTATTTTAAGACAAAACAAAAAG-TAAGAACAATTTGAAATAG
* * *
3771082 GTAATTGTTCAAATAGTCATAACT-ATTTAAATTTGTTCGATAAACAAATTTATTTTTTAAA-TC
1 ATAATTGTTCAAATAGTCATAA-TAATTTAAACTTATTCGATAAACAAATTTATTTTTTAAATTC
* * * ** *
3771145 -T-CTTATTAATT-TTTAAAATATTAATAAA-TTAGAATTATATTATTTCTAATAAACTTGTAT-
65 TTACTTATTAATTGTCT-AAATATTAACAAATTTA-AATTATATTAATTAAAACAAACTTGTATG
** * * *
3771205 AAACAAAAATAATTATTTTGTGACAAAATAAAAAGTAATAATAATTTGAAATAG
128 AAACAAAAA-AATTATTTTAAGACAAAACAAAAAGTAAGAACAATTTGAAATAG
*
3771259 ATAATTGTTCAAATAATCATAA
1 ATAATTGTTCAAATAGTCATAA
3771281 ATTCATTTAT
Statistics
Matches: 165, Mismatches: 30, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
177 47 0.28
178 63 0.38
179 1 0.01
181 2 0.01
182 51 0.31
183 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.41
Consensus pattern (180 bp):
ATAATTGTTCAAATAGTCATAATAATTTAAACTTATTCGATAAACAAATTTATTTTTTAAATTCT
TACTTATTAATTGTCTAAATATTAACAAATTTAAATTATATTAATTAAAACAAACTTGTATGAAA
CAAAAAAATTATTTTAAGACAAAACAAAAAGTAAGAACAATTTGAAATAG
Found at i:3771306 original size:156 final size:157
Alignment explanation
Indices: 3771146--3771429 Score: 392
Period size: 156 Copynumber: 1.8 Consensus size: 157
3771136 TTTTAAATCT
* * *
3771146 CTTATTAATTTTTAAAATATTAATAAATTAGAATTATATTATTTCTAATAA-ACTTGTATAAACA
1 CTTATTAATTTTTAAAATATTAATAAATTAGAATTATATTATTTCGAATAAGA-TTGCACAAACA
* * * * * *
3771210 AAAATAATTATTTTGTGACAAAATAAAA-AGTAATAATAATTTGAAATAGATAATTGTTCAAATA
65 AAAACAATTATTTTATGACAAAACAAAATAGTAATAACAATTTGAAATAAATAATTATTCAAATA
3771274 ATCATAAATTCATTTATTAAATTTTTTA
130 ATCATAAATTCATTTATTAAATTTTTTA
* * * * *
3771302 CTTATTAATTTTTAAAATATTAATAAATTAGAATTGTTTTATTTCGAATAAGATTGCACCAATAG
1 CTTATTAATTTTTAAAATATTAATAAATTAGAATTATATTATTTCGAATAAGATTGCACAAACAA
* * *
3771367 AAACAATTATTTTATGACAAAGCAAAATGGTAATAACGATTTGAAATAAATAATTATTCAAAT
66 AAACAATTATTTTATGACAAAACAAAATAGTAATAACAATTTGAAATAAATAATTATTCAAAT
3771430 TGTTATAATT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
156 78 0.72
157 31 0.28
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (157 bp):
CTTATTAATTTTTAAAATATTAATAAATTAGAATTATATTATTTCGAATAAGATTGCACAAACAA
AAACAATTATTTTATGACAAAACAAAATAGTAATAACAATTTGAAATAAATAATTATTCAAATAA
TCATAAATTCATTTATTAAATTTTTTA
Found at i:3771737 original size:181 final size:177
Alignment explanation
Indices: 3771299--3772166 Score: 650
Period size: 181 Copynumber: 4.8 Consensus size: 177
3771289 ATTAAATTTT
* * ** **
3771299 TTACTTATTAATTTTTAAAATATTAATAAATTAGA-ATTGTTTTATTTCGAATAAGATTGCACCA
1 TTACTTATTAATTTTTAAAATATTAATAAATTA-ATATTATTTTATTT-GAATAAGCTTATATGA
* * ** * * *
3771363 -ATAGAAACAATTATTTTATGACAAAGCAAAATGGTAATAACGATTTGAAATAAATAATTATTCA
64 GATA-AAA-AATTGTTTTATGATAAAATAAAAT-GTTATAACGATTTAAAATAAATAATTACTCA
**** ** ** * *
3771427 AATTGTTATAATTAA-TCAAATTGGTTTGATTAACAGATTTATTTTTAAA-TC
126 AATAACCATAA-TAATTTGAATTAATTTGATAAACAAATTTATTTTTAAACTC
* **
3771478 -T-CTTATTAATTTTTAAAATATAAATAAATTAATATTATTTTATTTTGAATAAATTTATATGA-
1 TTACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTA-TTTGAATAAGCTTATATGAG
*
3771540 ATAAAAACATTTGTTTTATGATAAAATAAAATGTTATAACGATTTAAAATAGATAATTACT-AAT
65 ATAAAAA-A-TTGTTTTATGATAAAATAAAATGTTATAACGATTTAAAATAAATAATTACTCAA-
* * * *
3771604 ATAGCCTTAACT-ATTTGAATTGATTTGATAAATAAATTTATTTTTTAAATCTC
127 ATAACCATAA-TAATTTGAATTAATTTGATAAACAAATTTA-TTTTTAAA-CTC
* * * * *
3771657 TTAGTTATTAATTTTTATAATATTATTATATTAGTATTATTTTATTATGAATAAGCTTGA-ATGA
1 TTACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTT-ATATGA
* * * * * **
3771721 GCATAAATAATTGTTTTATGACAAAATAAAAAAGTTATAAC-AGTTTGAAATATATAATTGTTCA
64 G-ATAAAAAATTGTTTTATGATAAAAT-AAAATGTTATAACGA-TTTAAAATAAATAATTACTCA
* *
3771785 AATAATCATAATAATTTGAATTAATTTGATAAACAAATTTATTTTTAAACTT
126 AATAACCATAATAATTTGAATTAATTTGATAAACAAATTTATTTTTAAACTC
* *
3771837 TTACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTCAAATAGGCTTATATGAA
1 TTACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTTATATG-A
* * * * *
3771902 GA-AAAACAATTGTTTTATGATAAAATTAAACT-TCATAATGATTTAAAATAAATAATTATTTAA
64 GATAAAA-AATTGTTTTATGATAAAA-TAAAATGTTATAACGATTTAAAATAAATAATTACTCAA
* * * * * * *** * *
3771965 ATGATCATAATTATTTGAACTCATTCGATAAATTGATTTATTTTTTTAA-TT
127 ATAACCATAATAATTTGAATTAATTTGATAAACAAATTTA-TTTTTAAACTC
* * * ** * *
3772016 TTGAACTTTTTAATTTTTAAAATATTAACAAAATAATATTATTTTATTTTGAATAAAATTTTTTG
1 TT--ACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTA-TTTGAATAAGCTTATATG
* * * ** * **
3772081 AACGA-AAACAATTATTTTATTATAAAATAAAATGTTATAATAATTTTAAATAAATAATTGTTCA
63 -A-GATAAAAAATTGTTTTATGATAAAATAAAATGTTATAACGATTTAAAATAAATAATTACTCA
** *
3772145 AATAATTATAATTATTTGAATT
126 AATAACCATAATAATTTGAATT
3772167 TGTATTTAGA
Statistics
Matches: 563, Mismatches: 95, Indels: 60
0.78 0.13 0.08
Matches are distributed among these distances:
175 4 0.01
176 57 0.10
177 76 0.13
178 4 0.01
179 66 0.12
180 91 0.16
181 187 0.33
182 70 0.12
183 8 0.01
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.44
Consensus pattern (177 bp):
TTACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTGAATAAGCTTATATGAGA
TAAAAAATTGTTTTATGATAAAATAAAATGTTATAACGATTTAAAATAAATAATTACTCAAATAA
CCATAATAATTTGAATTAATTTGATAAACAAATTTATTTTTAAACTC
Found at i:3771827 original size:358 final size:356
Alignment explanation
Indices: 3771277--3772166 Score: 932
Period size: 361 Copynumber: 2.5 Consensus size: 356
3771267 TCAAATAATC
* * * *
3771277 ATAAATTCATTTATTAAATTTTTTACTTATTAATTTTTAAAATATTAATAAATTAGAATTGTTTT
1 ATAAATTTATTTTTTAAA--TTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTT
* ** * ** ** *
3771342 ATTTCGAATAAGATTGCACCAATAGAAACAATTATTTTATGACAAAGCAAAATGGTAATAAC-GA
64 ATTT-GAATAAGATTGAATGAACA-AAACAATTATTTTATGACAAAATAAAAAAGTTATAACAG-
* ** ** ** * *
3771406 TTTGAAATAAATAATTATTCAAATTGTTATAATTAA-TCAAATTGGTTTGATTAACAGATTTATT
126 TTTGAAATAAATAATTGTTCAAATAATTATAA-TAATTTGAATTAATTTGATAAACAAATTTATT
** *
3771470 TTTAAA-TCT-CTTATTAATTTTTAAAATATAAATAAATTAATATTATTTTATTTTGAATAAATT
190 TTTAAACTCTACTTATTAATTTTTAAAATATAAATAAATTAATATTATTTTATTTCAAATAAACT
* * * *
3771533 TATATGAATAAAAACATTTGTTTTATGATAAAA-TAAAATGTTATAACGATTTAAAATAGATAAT
255 TATATGAAGAAAAACAATTGTTTTATGATAAAATTAAAAT-TCATAACGATTTAAAATAAATAAT
* * * *
3771597 TA-CTAATAT-AGCCTTAACTATTTGAATTGATTTGATAA
319 TATCTAA-ATGA-CCATAACTATTTGAACTCATTCGATAA
* * * *
3771635 ATAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTTATAATATTATTATATTAGTATTATTTT
1 ATAAATTTATTTTTTAAAT-T-TTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTT
* * * *
3771700 ATTATGAATAAGCTTGAATGAGCATAAATAATTGTTTTATGACAAAATAAAAAAGTTATAACAGT
64 ATT-TGAATAAGATTGAATGAACA-AAACAATTATTTTATGACAAAATAAAAAAGTTATAACAGT
* *
3771765 TTGAAATATATAATTGTTCAAATAATCATAATAATTTGAATTAATTTGATAAACAAATTTATTTT
127 TTGAAATAAATAATTGTTCAAATAATTATAATAATTTGAATTAATTTGATAAACAAATTTATTTT
* * **
3771830 TAAACTTTTACTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTCAAATAGGCTT
192 TAAAC-TCTACTTATTAATTTTTAAAATATAAATAAATTAATATTATTTTATTTCAAATAAACTT
* *
3771895 ATATGAAGAAAAACAATTGTTTTATGATAAAATTAAACTTCATAATGATTTAAAATAAATAATTA
256 ATATGAAGAAAAACAATTGTTTTATGATAAAATTAAAATTCATAACGATTTAAAATAAATAATTA
* * *
3771960 TTTAAATGATCATAATTATTTGAACTCATTCGATAA
321 TCTAAATGACCATAACTATTTGAACTCATTCGATAA
** * * * * *
3771996 ATTGATTTATTTTTTTAATTTTGAACTTTTTAATTTTTAAAATATTAACAAAATAATATTATTTT
1 ATAAATTTATTTTTTAAATTTT--ACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTT
* *** * * * * *
3772061 ATTTTGAATAAAATTTTTTGAACGAAAACAATTATTTTATTATAAAAT-AAAATGTTATAATAAT
64 A-TTTGAATAAGATTGAATGAAC-AAAACAATTATTTTATGACAAAATAAAAAAGTTATAACAGT
* *
3772125 TTTAAATAAATAATTGTTCAAATAATTATAATTATTTGAATT
127 TTGAAATAAATAATTGTTCAAATAATTATAATAATTTGAATT
3772167 TGTATTTAGA
Statistics
Matches: 436, Mismatches: 81, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
356 1 0.00
357 4 0.01
358 154 0.35
359 4 0.01
360 54 0.12
361 207 0.47
362 12 0.03
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (356 bp):
ATAAATTTATTTTTTAAATTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTAT
TTGAATAAGATTGAATGAACAAAACAATTATTTTATGACAAAATAAAAAAGTTATAACAGTTTGA
AATAAATAATTGTTCAAATAATTATAATAATTTGAATTAATTTGATAAACAAATTTATTTTTAAA
CTCTACTTATTAATTTTTAAAATATAAATAAATTAATATTATTTTATTTCAAATAAACTTATATG
AAGAAAAACAATTGTTTTATGATAAAATTAAAATTCATAACGATTTAAAATAAATAATTATCTAA
ATGACCATAACTATTTGAACTCATTCGATAA
Found at i:3776051 original size:41 final size:41
Alignment explanation
Indices: 3775962--3776136 Score: 181
Period size: 41 Copynumber: 4.2 Consensus size: 41
3775952 AATAATCAAG
* * * *
3775962 ATTATATAAAAGGTTATTAAAAATTGTATAAAAATTACCAAA
1 ATTATATTAAAGG-TAATCAAAATTGTATAAAAGTTACCAAA
*
3776004 AGTATATTAAAGGTAATCAAAATTGTACTAAAAGTTACCAAA
1 ATTATATTAAAGGTAATCAAAATTGTA-TAAAAGTTACCAAA
* * * *
3776046 A-TATATTAAAGGTTATCAAAATTTTATTAGAAGTTATCAAA
1 ATTATATTAAAGGTAATCAAAATTGTA-TAAAAGTTACCAAA
* ** * * *
3776087 ATTATATCAAAAATAATTAAAATTGTATAAAATTTTCCAAA
1 ATTATATTAAAGGTAATCAAAATTGTATAAAAGTTACCAAA
3776128 ATTATATTA
1 ATTATATTA
3776137 GAGTTTACCA
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
41 66 0.60
42 44 0.40
ACGTcount: A:0.51, C:0.06, G:0.07, T:0.35
Consensus pattern (41 bp):
ATTATATTAAAGGTAATCAAAATTGTATAAAAGTTACCAAA
Found at i:3776059 original size:83 final size:83
Alignment explanation
Indices: 3775962--3776136 Score: 201
Period size: 83 Copynumber: 2.1 Consensus size: 83
3775952 AATAATCAAG
* * **
3775962 ATTATATAAAAGGTTATTAAAAATTGTA-TAAAAATTACCAAAAGTATATTAAAGGTAATCAAAA
1 ATTATATTAAAGGTTA-TAAAAATTGTATTAAAAATTACCAAAAGTATATCAAAAATAATCAAAA
3776026 TTGTACTAAAAGTTACCAAA
65 TTGTA-TAAAAGTTACCAAA
* * * * * * *
3776046 A-TATATTAAAGGTTATCAAAATTTTATTAGAAGTTATCAAAATTATATCAAAAATAATTAAAAT
1 ATTATATTAAAGGTTATAAAAATTGTATTAAAAATTACCAAAAGTATATCAAAAATAATCAAAAT
* *
3776110 TGTATAAAATTTTCCAAA
66 TGTATAAAAGTTACCAAA
3776128 ATTATATTA
1 ATTATATTA
3776137 GAGTTTACCA
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
82 22 0.29
83 53 0.70
84 1 0.01
ACGTcount: A:0.51, C:0.06, G:0.07, T:0.35
Consensus pattern (83 bp):
ATTATATTAAAGGTTATAAAAATTGTATTAAAAATTACCAAAAGTATATCAAAAATAATCAAAAT
TGTATAAAAGTTACCAAA
Found at i:3776060 original size:20 final size:21
Alignment explanation
Indices: 3775996--3776093 Score: 74
Period size: 21 Copynumber: 4.7 Consensus size: 21
3775986 TGTATAAAAA
3775996 TTACCAAAAGTATATTAAAGG
1 TTACCAAAAGTATATTAAAGG
* * * * * *
3776017 TAATCAAAATTGTACTAAAAG
1 TTACCAAAAGTATATTAAAGG
3776038 TTACCAAAA-TATATTAAAGG
1 TTACCAAAAGTATATTAAAGG
* * *
3776058 TTATCAAAATTTTATTAGAA-G
1 TTACCAAAAGTATATTA-AAGG
* *
3776079 TTATCAAAATTATAT
1 TTACCAAAAGTATAT
3776094 CAAAAATAAT
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
20 16 0.26
21 43 0.70
22 2 0.03
ACGTcount: A:0.48, C:0.08, G:0.09, T:0.35
Consensus pattern (21 bp):
TTACCAAAAGTATATTAAAGG
Found at i:3776171 original size:83 final size:83
Alignment explanation
Indices: 3776017--3776181 Score: 179
Period size: 83 Copynumber: 2.0 Consensus size: 83
3776007 ATATTAAAGG
* ** * * *
3776017 TAATCAAAATTGTACTAAAAGTTACCAAAATATATTAAAGGTTATCAAAATTTTATTAGAAGTTA
1 TAATCAAAATTGTACTAAAAGTTACCAAAATATATTAAAGGTTACCAAAATTCAATCAGAAATAA
3776082 TCAAAATTATATCAAAAA
66 TCAAAATTATATCAAAAA
* * * * * *
3776100 TAATTAAAATTGTA-TAAAATTTTCCAAAATTATATTAGAGTTTACCAAAATTCAATCATAAATA
1 TAATCAAAATTGTACTAAAAGTTACCAAAA-TATATTAAAGGTTACCAAAATTCAATCAGAAATA
* * *
3776164 ATTAAAATTGTATTAAAA
65 ATCAAAATTATATCAAAA
3776182 GTTACTAAAT
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
82 13 0.20
83 53 0.80
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (83 bp):
TAATCAAAATTGTACTAAAAGTTACCAAAATATATTAAAGGTTACCAAAATTCAATCAGAAATAA
TCAAAATTATATCAAAAA
Found at i:3776173 original size:62 final size:63
Alignment explanation
Indices: 3776062--3776181 Score: 174
Period size: 62 Copynumber: 1.9 Consensus size: 63
3776052 TAAAGGTTAT
* *
3776062 CAAAATTTTATTAGAAGTTATCAAAATTATATCAAAAATAATTAAAATTGTA-TAAAATTTTC
1 CAAAATTATATTAGAAGTTACCAAAATTATATCAAAAATAATTAAAATTGTATTAAAATTTTC
*
3776124 CAAAATTATATTAG-AGTTTACCAAAATTCA-ATCATAAATAATTAAAATTGTATTAAAA
1 CAAAATTATATTAGAAG-TTACCAAAATT-ATATCAAAAATAATTAAAATTGTATTAAAA
3776182 GTTACTAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
61 2 0.04
62 44 0.85
63 6 0.12
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (63 bp):
CAAAATTATATTAGAAGTTACCAAAATTATATCAAAAATAATTAAAATTGTATTAAAATTTTC
Found at i:3776192 original size:62 final size:62
Alignment explanation
Indices: 3776049--3776215 Score: 169
Period size: 62 Copynumber: 2.7 Consensus size: 62
3776039 TACCAAAATA
* * *
3776049 TATTAAAGGTTATCAAAATTTTATTAGAAGTTATCAAAATTATATCAAAAATAATTAAAATTG
1 TATTAAAAGTTA-CAAAATTATATTAGAAGTTACCAAAATTATATCAAAAATAATTAAAATTG
* * *
3776112 TA-TAAAATTTTCCAAAATTATATTAG-AGTTTACCAAAATTCA-ATCATAAATAATTAAAATTG
1 TATTAAAA-GTTACAAAATTATATTAGAAG-TTACCAAAATT-ATATCAAAAATAATTAAAATTG
* ** ** *
3776174 TATTAAAAGTTACTAAATTGCATTCTACGTTACCAAAATTAT
1 TATTAAAAGTTACAAAATTATATTAGAAGTTACCAAAATTAT
3776216 GATAGATATT
Statistics
Matches: 84, Mismatches: 14, Indels: 13
0.76 0.13 0.12
Matches are distributed among these distances:
61 3 0.04
62 70 0.83
63 11 0.13
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.38
Consensus pattern (62 bp):
TATTAAAAGTTACAAAATTATATTAGAAGTTACCAAAATTATATCAAAAATAATTAAAATTG
Found at i:3776833 original size:71 final size:71
Alignment explanation
Indices: 3776717--3776858 Score: 221
Period size: 71 Copynumber: 2.0 Consensus size: 71
3776707 TACACAGAGC
* *
3776717 TGATATAAAAACAGATACAACAAGAAGGATACTTATCATATCAAAGAAACAATTAATATGAACGG
1 TGATATAAAAACAGATACAACAAGAAGGATACTGATCATATCAAAGAAACAACTAATATGAACGG
3776782 ATGATT
66 ATGATT
* * * * *
3776788 TGATATAAAAACAGATACAACAAGTAGGATACTGGTCATATCAAAGAAACAACTAGTGTGAATGG
1 TGATATAAAAACAGATACAACAAGAAGGATACTGATCATATCAAAGAAACAACTAATATGAACGG
3776853 ATGATT
66 ATGATT
3776859 GATTCAAATG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.24
Consensus pattern (71 bp):
TGATATAAAAACAGATACAACAAGAAGGATACTGATCATATCAAAGAAACAACTAATATGAACGG
ATGATT
Found at i:3781952 original size:14 final size:15
Alignment explanation
Indices: 3781935--3781963 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
3781925 TATTATATTC
3781935 AAATAATT-ATAAAT
1 AAATAATTAATAAAT
3781949 AAATAATTAATAAAT
1 AAATAATTAATAAAT
3781964 TCGGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATAATTAATAAAT
Found at i:3785514 original size:28 final size:28
Alignment explanation
Indices: 3785482--3785548 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
3785472 TAATTGGAAC
***
3785482 AGAAAGCCAACAAGGTTATACAACAAAG
1 AGAAAGCCAACAAAAATATACAACAAAG
**
3785510 AGAAAGCTGACAAAAATATACAACAAAG
1 AGAAAGCCAACAAAAATATACAACAAAG
3785538 AGAAAGCCAAC
1 AGAAAGCCAAC
3785549 CCCCTTGACA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.57, C:0.18, G:0.16, T:0.09
Consensus pattern (28 bp):
AGAAAGCCAACAAAAATATACAACAAAG
Found at i:3788694 original size:18 final size:19
Alignment explanation
Indices: 3788671--3788709 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
3788661 TTTTTATTTT
*
3788671 TTTATTTTAT-TTGTATCA
1 TTTATTTTATATTGCATCA
3788689 TTTATTTTATATTGCATCA
1 TTTATTTTATATTGCATCA
3788708 TT
1 TT
3788710 ATGCATGGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTATTTTATATTGCATCA
Found at i:3788699 original size:83 final size:87
Alignment explanation
Indices: 3788555--3788728 Score: 268
Period size: 83 Copynumber: 2.0 Consensus size: 87
3788545 AGAAGAATTC
*
3788555 AATTTGCAGTGTGTGGTTTTATTACTATTATTTTTTATTTTATTTGTATCATTTATTTTATATTG
1 AATTTGCAGTGTGTGATTTTATTA-TATTATTTTTTATTTTATTTGTATCATTTATTTTATATTG
* *
3788620 CATTATTAT-CTATGGTGTTTGTT
65 CATCATTATGC-ATGGCGTTTGTT
3788643 AATTTGCAGTGTGTGATTTT-TT-TA-T-TTTTTTATTTTATTTGTATCATTTATTTTATATTGC
1 AATTTGCAGTGTGTGATTTTATTATATTATTTTTTATTTTATTTGTATCATTTATTTTATATTGC
3788704 ATCATTATGCATGGCGTTTGTT
66 ATCATTATGCATGGCGTTTGTT
3788726 AAT
1 AAT
3788729 AATAAAATAG
Statistics
Matches: 82, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
83 57 0.70
84 2 0.02
85 2 0.02
87 2 0.02
88 19 0.23
ACGTcount: A:0.21, C:0.06, G:0.14, T:0.59
Consensus pattern (87 bp):
AATTTGCAGTGTGTGATTTTATTATATTATTTTTTATTTTATTTGTATCATTTATTTTATATTGC
ATCATTATGCATGGCGTTTGTT
Found at i:3791208 original size:175 final size:174
Alignment explanation
Indices: 3790900--3791248 Score: 680
Period size: 175 Copynumber: 2.0 Consensus size: 174
3790890 GACTGTATTC
*
3790900 CCTGTTGTTTAAGAATTGAAACCTGTAGTAGAGAATTCAACAAAAAAATAGATGAAAATGGTTCA
1 CCTGTTGTTTAAGAATCGAAACCTGTAGTAGAGAATTCAACAAAAAAATAGATGAAAATGGTTCA
3790965 CGGTAATGCATTAATCATTGCTTACAATAAATAAATATTAACTCTCAATTTTGTATAATATATAT
66 CGGTAATGCATTAATCATTGCTTACAATAAATAAATATTAACTCTCAATTTTGTATAATATATAT
3791030 ATATATATGAATGTATTAATCAAAGCTTTTGGGTTCAAGATTGT
131 ATATATATGAATGTATTAATCAAAGCTTTTGGGTTCAAGATTGT
3791074 CCTGTTGTTTAAGGAATCGAAACCTGTAGTAGAGAATTCAACAAAAAAATAGATGAAAATGGTTC
1 CCTGTTGTTTAA-GAATCGAAACCTGTAGTAGAGAATTCAACAAAAAAATAGATGAAAATGGTTC
3791139 ACGGTAATGCATTAATCATTGCTTACAATAAATAAATATTAACTCTCAATTTTGTATAATATATA
65 ACGGTAATGCATTAATCATTGCTTACAATAAATAAATATTAACTCTCAATTTTGTATAATATATA
3791204 TATATATATGAATGTATTAATCAAAGCTTTTGGGTTCAAGATTGT
130 TATATATATGAATGTATTAATCAAAGCTTTTGGGTTCAAGATTGT
3791249 TTGGGTGTCT
Statistics
Matches: 173, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
174 12 0.07
175 161 0.93
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (174 bp):
CCTGTTGTTTAAGAATCGAAACCTGTAGTAGAGAATTCAACAAAAAAATAGATGAAAATGGTTCA
CGGTAATGCATTAATCATTGCTTACAATAAATAAATATTAACTCTCAATTTTGTATAATATATAT
ATATATATGAATGTATTAATCAAAGCTTTTGGGTTCAAGATTGT
Found at i:3792129 original size:21 final size:19
Alignment explanation
Indices: 3792097--3792146 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
3792087 ATAATTGTTT
3792097 TATTTTTTATTATTTGATG
1 TATTTTTTATTATTTGATG
*
3792116 TATTTCTTGTATTATTTGATA
1 TATTT-TT-TATTATTTGATG
*
3792137 TACTTTTTAT
1 TATTTTTTAT
3792147 GATACGATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 8 0.30
20 4 0.15
21 15 0.56
ACGTcount: A:0.22, C:0.04, G:0.08, T:0.66
Consensus pattern (19 bp):
TATTTTTTATTATTTGATG
Found at i:3793982 original size:144 final size:143
Alignment explanation
Indices: 3793592--3794009 Score: 412
Period size: 144 Copynumber: 2.9 Consensus size: 143
3793582 ATTATGATTA
* * * * * * *
3793592 ACATAATAAAAATTTTAAATCTAATAAAATTTGACAAAGATTGCATTTTTTCATATAAAAATATC
1 ACATAATTAAAATTTTAAATTTAATAAAATTTGACAAA-ACTGCA-TTTTTAACATAAAAACATA
* * * * * * **
3793657 ATTTTTGTCAAAGTTAAATTGGACAAATACTACGTTTGGCTTGATGAAAATGTCATTTTTATCAA
64 ATCTTTGT-AAAGTTAAATTAGACAAATATTACGTTTAGCTTAATAAAAACATCATTTTTATCAA
*
3793722 GTTAACATAAATTTTG
128 ATTAACATAAATTTTG
* * * * *
3793738 ACATAACTAAAATTTTAAATTTTATAAAATTTGGTTC-AAACTGCATTTTAAACATAAAAACATT
1 ACATAATTAAAATTTTAAATTTAATAAAATTT-G-ACAAAACTGCATTTTTAACATAAAAACATA
* * *
3793802 ATCTTTATCAAA-TTAAATTAGACAAAAATTGA-GTTTAGCTTAATAAAAACATCATTTTTGTCA
64 ATCTTTGT-AAAGTTAAATTAGACAAATATT-ACGTTTAGCTTAATAAAAACATCATTTTTATCA
*
3793865 AATTAACGTAAAATTTT-
127 AATTAACAT-AAATTTTG
* **
3793882 ACATAATTAAAATTTTAAATTTAATAAAATTTGACAAATACTGTATTTTTAACATAAAGGCATAA
1 ACATAATTAAAATTTTAAATTTAATAAAATTTGACAAA-ACTGCATTTTTAACATAAAAACATAA
* ** ** * *
3793947 TCTTTGTTAAGTTAAATTAGACAAATATTACGTTTAATTTGTTGAAAACGTCATTTTTATCAA
65 TCTTTGTAAAGTTAAATTAGACAAATATTACGTTTAGCTTAATAAAAACATCATTTTTATCAA
3794010 GTTATATTTT
Statistics
Matches: 222, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
142 1 0.00
143 6 0.03
144 146 0.66
145 32 0.14
146 33 0.15
147 3 0.01
148 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (143 bp):
ACATAATTAAAATTTTAAATTTAATAAAATTTGACAAAACTGCATTTTTAACATAAAAACATAAT
CTTTGTAAAGTTAAATTAGACAAATATTACGTTTAGCTTAATAAAAACATCATTTTTATCAAATT
AACATAAATTTTG
Found at i:3795372 original size:19 final size:19
Alignment explanation
Indices: 3795332--3795366 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
3795322 TAATATGATT
3795332 TTTAATATATTTAAATAAA
1 TTTAATATATTTAAATAAA
3795351 TTTAA-ATA-TTAAATAA
1 TTTAATATATTTAAATAA
3795367 TAATTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTAATATATTTAAATAAA
Found at i:3799471 original size:19 final size:19
Alignment explanation
Indices: 3799447--3799483 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3799437 AGTTAAAAGA
*
3799447 TTAATTTTTTAATTATTTT
1 TTAATTTTTTAATGATTTT
3799466 TTAATTTTTTAATGATTT
1 TTAATTTTTTAATGATTT
3799484 AAGAGGCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (19 bp):
TTAATTTTTTAATGATTTT
Done.