Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 24 of 121
Found at i:4253583 original size:26 final size:26
Alignment explanation
Indices: 4253539--4253596 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
4253529 AAAACGATTG
*
4253539 AAATAATTTTTGTTGATATAATATAAT
1 AAATAATTTTTATTGATATAATA-AAT
4253566 AAATAATTTTTATT-ATATAATAAAT
1 AAATAATTTTTATTGATATAATAAAT
*
4253591 TAATAA
1 AAATAA
4253597 GAAAATAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 8 0.28
26 8 0.28
27 13 0.45
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (26 bp):
AAATAATTTTTATTGATATAATAAAT
Found at i:4253622 original size:35 final size:33
Alignment explanation
Indices: 4253566--4253631 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 33
4253556 ATAATATAAT
4253566 AAATAATTTTTATTATATAATAAATTAATAAGA
1 AAATAATTTTTATTATATAATAAATTAATAAGA
*
4253599 AAATAATTTTTGTATTATTTAATAAATTAATAA
1 AAATAA-TTTT-TATTATATAATAAATTAATAA
4253632 TAACATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 6 0.20
34 4 0.13
35 20 0.67
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (33 bp):
AAATAATTTTTATTATATAATAAATTAATAAGA
Found at i:4253787 original size:21 final size:21
Alignment explanation
Indices: 4253746--4253788 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
4253736 GGTTCTATTC
*
4253746 ACACCCCAATAATTGCTTTAT
1 ACACCCCAATAATTGATTTAT
*
4253767 ACACTCCAATAATT-ATATTAT
1 ACACCCCAATAATTGAT-TTAT
4253788 A
1 A
4253789 AATTTAACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (21 bp):
ACACCCCAATAATTGATTTAT
Found at i:4260463 original size:19 final size:19
Alignment explanation
Indices: 4260418--4260464 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
4260408 TTTTTACATT
* *
4260418 TCACTATAGTAGTTTATTG
1 TCACTATAGTAGTCTATGG
*
4260437 TCATTATAGTAGTCTATGG
1 TCACTATAGTAGTCTATGG
*
4260456 TTACTATAG
1 TCACTATAG
4260465 CGATAGTTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.45
Consensus pattern (19 bp):
TCACTATAGTAGTCTATGG
Found at i:4261772 original size:29 final size:27
Alignment explanation
Indices: 4261711--4261768 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
4261701 AAAAATATTG
*
4261711 AAATAATTTTTGTTGATATAATATAAT
1 AAATAATTTTTATTGATATAATATAAT
4261738 AAATAATTTTTATT-ATATAATA-AAT
1 AAATAATTTTTATTGATATAATATAAT
*
4261763 TAATAA
1 AAATAA
4261769 ATAAATAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 8 0.28
26 8 0.28
27 13 0.45
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (27 bp):
AAATAATTTTTATTGATATAATATAAT
Found at i:4262527 original size:15 final size:16
Alignment explanation
Indices: 4262507--4262536 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4262497 ATTTTTAATT
4262507 TTATTGATT-TCTTTG
1 TTATTGATTATCTTTG
4262522 TTATTGATTATCTTT
1 TTATTGATTATCTTT
4262537 ATCTTCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.07, G:0.10, T:0.67
Consensus pattern (16 bp):
TTATTGATTATCTTTG
Found at i:4263838 original size:3 final size:3
Alignment explanation
Indices: 4263830--4263872 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
4263820 TCTTTAAAAT
4263830 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4263873 AATTTTGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4263981 original size:53 final size:53
Alignment explanation
Indices: 4263905--4264006 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
4263895 TGTCTTATAG
* *
4263905 GATTTTTATGGATTAAAA-ATTTTTAATTCATAAATCCTATCAAATTATTGGAA
1 GATTTTTATGGATTAAAATATTTTTAATT-ATAAATCCTACCAAACTATTGGAA
* ** * *
4263958 GATTTTTATGGGTTTTAATTTTTTTAATTATAAATTCTACCAAACTATT
1 GATTTTTATGGATTAAAATATTTTTAATTATAAATCCTACCAAACTATT
4264007 AAACAATGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 32 0.78
54 9 0.22
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (53 bp):
GATTTTTATGGATTAAAATATTTTTAATTATAAATCCTACCAAACTATTGGAA
Found at i:4264119 original size:96 final size:96
Alignment explanation
Indices: 4264018--4264215 Score: 247
Period size: 96 Copynumber: 2.1 Consensus size: 96
4264008 AACAATGTCA
** * * * *
4264018 TAATGAAATTTCATGAA-AAAATAAAATTTTCAATTCTATCAAACTATTGGAGGATTTAAATTTC
1 TAATGAAATTTCATGAAGAAAATAAAATTTTCAACCCTACCAAACTAGTGGAAGATTTAAATCTC
* *
4264082 TAAATTAAATCTTA-CTAAACTGTTGGAAGATT
66 -AAATTAAATCTTATC-AAACTATTAGAAGATT
** * *
4264114 TAATGATGTTTTATGAAGAAAATAAAATTTTTAACCCTACCAAACTAGTGGAAGATTTAAATCTC
1 TAATGAAATTTCATGAAGAAAATAAAATTTTCAACCCTACCAAACTAGTGGAAGATTTAAATCTC
*
4264179 AAATTAAATTTTATCAAACTATTAGAAGATT
66 AAATTAAATCTTATCAAACTATTAGAAGATT
4264210 TAATGA
1 TAATGA
4264216 CTTTTTAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
96 46 0.53
97 41 0.47
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (96 bp):
TAATGAAATTTCATGAAGAAAATAAAATTTTCAACCCTACCAAACTAGTGGAAGATTTAAATCTC
AAATTAAATCTTATCAAACTATTAGAAGATT
Found at i:4264222 original size:96 final size:96
Alignment explanation
Indices: 4264030--4264215 Score: 250
Period size: 97 Copynumber: 1.9 Consensus size: 96
4264020 ATGAAATTTC
** * * * *
4264030 ATGAAAAAATAAAATTTTCAATTCTATCAAACTATTGGAGGATTTAAATTTCTAAATTAAATCTT
1 ATGAAAAAATAAAATTTTCAACCCTACCAAACTAGTGGAAGATTTAAATCTCTAAATTAAATCTT
* *
4264095 ACTAAACTGTTGGAAGATTTAATGATGTTTT
66 ACTAAACTATTAGAAGATTTAATGATGTTTT
* *
4264126 ATGAAGAAAATAAAATTTTTAACCCTACCAAACTAGTGGAAGATTTAAATCTC-AAATTAAATTT
1 ATGAA-AAAATAAAATTTTCAACCCTACCAAACTAGTGGAAGATTTAAATCTCTAAATTAAATCT
4264190 TA-TCAAACTATTAGAAGATTTAATGA
65 TACT-AAACTATTAGAAGATTTAATGA
4264216 CTTTTTAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
95 1 0.01
96 37 0.47
97 40 0.51
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.36
Consensus pattern (96 bp):
ATGAAAAAATAAAATTTTCAACCCTACCAAACTAGTGGAAGATTTAAATCTCTAAATTAAATCTT
ACTAAACTATTAGAAGATTTAATGATGTTTT
Found at i:4264874 original size:19 final size:18
Alignment explanation
Indices: 4264850--4264911 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 18
4264840 AGACTAAGAG
4264850 AAAATAGAAAAACAAAAAA
1 AAAATA-AAAAACAAAAAA
*
4264869 AAAATACATAAAAACCAAAAA
1 AAAAT--A-AAAAACAAAAAA
* *
4264890 AATATAATAAACAAAAAA
1 AAAATAAAAAACAAAAAA
4264908 AAAA
1 AAAA
4264912 CATTGAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 13 0.37
19 6 0.17
21 16 0.46
ACGTcount: A:0.81, C:0.08, G:0.02, T:0.10
Consensus pattern (18 bp):
AAAATAAAAAACAAAAAA
Found at i:4264883 original size:21 final size:20
Alignment explanation
Indices: 4264857--4264911 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
4264847 GAGAAAATAG
4264857 AAAAACAAAAAAAAAATACAT
1 AAAAACAAAAAAAAAATA-AT
* *
4264878 AAAAACCAAAAAAATATAAT
1 AAAAACAAAAAAAAAATAAT
4264898 --AAACAAAAAAAAAA
1 AAAAACAAAAAAAAAA
4264912 CATTGAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 12 0.40
20 2 0.07
21 16 0.53
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (20 bp):
AAAAACAAAAAAAAAATAAT
Found at i:4264896 original size:17 final size:18
Alignment explanation
Indices: 4264866--4264908 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
4264856 GAAAAACAAA
4264866 AAAAAAATACATAA-AAACC
1 AAAAAAATA-ATAATAAA-C
4264885 AAAAAAAT-ATAATAAAC
1 AAAAAAATAATAATAAAC
4264902 AAAAAAA
1 AAAAAAA
4264909 AAACATTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 12 0.52
18 3 0.13
19 8 0.35
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (18 bp):
AAAAAAATAATAATAAAC
Found at i:4266313 original size:17 final size:17
Alignment explanation
Indices: 4266287--4266329 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
4266277 AGTTATAAAA
*
4266287 TATATTTTTTAATCTAT
1 TATATATTTTAATCTAT
*
4266304 TATATATTTTAATCTTT
1 TATATATTTTAATCTAT
4266321 TAT-TATTTT
1 TATATATTTT
4266330 TTTAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (17 bp):
TATATATTTTAATCTAT
Found at i:4267370 original size:9 final size:9
Alignment explanation
Indices: 4267356--4267383 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
4267346 AAATTTTTAA
4267356 TAAATATAT
1 TAAATATAT
4267365 TAAATATAT
1 TAAATATAT
4267374 TAAATATAT
1 TAAATATAT
4267383 T
1 T
4267384 TTAAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
TAAATATAT
Found at i:4268572 original size:15 final size:15
Alignment explanation
Indices: 4268554--4268600 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
4268544 ATATTTTCCC
4268554 ATTTTCAATTTTTTT
1 ATTTTCAATTTTTTT
*
4268569 ATTTT-ATTTTTTTT
1 ATTTTCAATTTTTTT
* *
4268583 AATTTC-ATTTATTT
1 ATTTTCAATTTTTTT
4268597 ATTT
1 ATTT
4268601 ATGTTGCAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
14 21 0.81
15 5 0.19
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (15 bp):
ATTTTCAATTTTTTT
Found at i:4268581 original size:23 final size:23
Alignment explanation
Indices: 4268555--4268600 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4268545 TATTTTCCCA
*
4268555 TTTTCAATTT-TTTTATTTTATTT
1 TTTTCAATTTCATTTA-TTTATTT
*
4268578 TTTTTAATTTCATTTATTTATTT
1 TTTTCAATTTCATTTATTTATTT
4268601 ATGTTGCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTCAATTTCATTTATTTATTT
Found at i:4269004 original size:22 final size:23
Alignment explanation
Indices: 4268955--4269006 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
4268945 ATTATTTTTC
* *
4268955 TTGAAATCAAATCATTTTGAATT
1 TTGAAAACAAACCATTTTGAATT
*
4268978 TTGAAAACAAACCATTTT-ATTT
1 TTGAAAACAAACCATTTTGAATT
4269000 TTGAAAA
1 TTGAAAA
4269007 TTTGAAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (23 bp):
TTGAAAACAAACCATTTTGAATT
Found at i:4269481 original size:7 final size:7
Alignment explanation
Indices: 4269469--4269534 Score: 50
Period size: 7 Copynumber: 10.0 Consensus size: 7
4269459 TTAGGTGTTT
4269469 GGTTTAG
1 GGTTTAG
4269476 GGTTTA-
1 GGTTTAG
* *
4269482 -ATTTAA
1 GGTTTAG
4269488 GGTTTAG
1 GGTTTAG
4269495 GGTTTAG
1 GGTTTAG
* *
4269502 GGCTTAA
1 GGTTTAG
4269509 GGTTT--
1 GGTTTAG
4269514 GGTTTAG
1 GGTTTAG
* *
4269521 GGTCTAA
1 GGTTTAG
4269528 GGTTTAG
1 GGTTTAG
4269535 ATGTAATTAA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
5 9 0.20
7 36 0.80
ACGTcount: A:0.20, C:0.03, G:0.35, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:4269490 original size:26 final size:25
Alignment explanation
Indices: 4269440--4269533 Score: 75
Period size: 26 Copynumber: 3.7 Consensus size: 25
4269430 GAGTTTAGAG
* * *
4269440 TTAGGTTTTAAGGTTTTATTTAGGT
1 TTAGGGTTTAGGGTTTAATTTAGGT
*
4269465 GTT-TGGTTTAGGGTTTAATTTAAGGT
1 -TTAGGGTTTAGGGTTTAATTT-AGGT
*
4269491 TTAGGGTTTAGGGCTTAAGGTTT-GGT
1 TTAGGGTTTAGGGTTTAA--TTTAGGT
* *
4269517 TTAGGGTCTAAGGTTTA
1 TTAGGGTTTAGGGTTTA
4269534 GATGTAATTA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
25 16 0.29
26 36 0.65
28 3 0.05
ACGTcount: A:0.19, C:0.02, G:0.31, T:0.48
Consensus pattern (25 bp):
TTAGGGTTTAGGGTTTAATTTAGGT
Found at i:4269517 original size:19 final size:19
Alignment explanation
Indices: 4269484--4269534 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
4269474 AGGGTTTAAT
4269484 TTAAGGTTTAGGGTTTAGGG
1 TTAAGGTTTA-GGTTTAGGG
4269504 CTTAAGGTTT-GGTTTAGGG
1 -TTAAGGTTTAGGTTTAGGG
4269523 TCTAAGGTTTAG
1 T-TAAGGTTTAG
4269535 ATGTAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 1 0.04
19 17 0.61
20 1 0.04
21 9 0.32
ACGTcount: A:0.20, C:0.04, G:0.35, T:0.41
Consensus pattern (19 bp):
TTAAGGTTTAGGTTTAGGG
Found at i:4272481 original size:2 final size:2
Alignment explanation
Indices: 4272476--4272506 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4272466 GAGAGGGAGA
*
4272476 AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4272507 AAGAGAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4274276 original size:19 final size:20
Alignment explanation
Indices: 4274252--4274292 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
4274242 AAAGATGATC
*
4274252 AATTTTTTAATTTTT-AATT
1 AATTTTATAATTTTTAAATT
4274271 AATTTTATAATTTTTAAATT
1 AATTTTATAATTTTTAAATT
4274291 AA
1 AA
4274293 AAAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
AATTTTATAATTTTTAAATT
Found at i:4281584 original size:17 final size:17
Alignment explanation
Indices: 4281528--4281591 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 17
4281518 TTTCTTACAC
4281528 TTTTATTAA-TTTA-TA
1 TTTTATTAAGTTTATTA
**
4281543 TTATTAGAAAGTTTA--A
1 TT-TTATTAAGTTTATTA
*
4281559 TTTTATTAATTTTATTA
1 TTTTATTAAGTTTATTA
*
4281576 TTTTTTTAAGTTTATT
1 TTTTATTAAGTTTATT
4281592 TTAAATTAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
15 11 0.29
16 8 0.21
17 19 0.50
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTATTAAGTTTATTA
Found at i:4281738 original size:19 final size:19
Alignment explanation
Indices: 4281699--4281738 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
4281689 CATAAATATT
* *
4281699 AATAAAATAATATAAGAAA
1 AATAAAAAAATATAAAAAA
*
4281718 AATAAAAAAATTTAAAAAA
1 AATAAAAAAATATAAAAAA
4281737 AA
1 AA
4281739 ACTTTTTTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (19 bp):
AATAAAAAAATATAAAAAA
Found at i:4282857 original size:43 final size:43
Alignment explanation
Indices: 4282781--4282914 Score: 117
Period size: 48 Copynumber: 3.0 Consensus size: 43
4282771 AATTTTTTTT
* * * *
4282781 AATTTAAAAAAGCTCCTCTTAGCAGAAGTTCAATGACTTTTAAA
1 AATTTAAAAAAGCTCATCTAAGCAGAAGCTCAATAAC-TTTAAA
* *
4282825 AATTT-AAAAAGCTCATCTAAGTAGAGGCTCAATAACTTTAAA
1 AATTTAAAAAAGCTCATCTAAGCAGAAGCTCAATAACTTTAAA
* * * *
4282867 AATTTCATATTAAAAAGCTCCTTTAAGTAGAAGCTCAACAACTTTAAA
1 AA-TT--TA--AAAAAGCTCATCTAAGCAGAAGCTCAATAACTTTAAA
4282915 TTCAATCATT
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 8 0.11
43 27 0.36
44 5 0.07
45 1 0.01
48 33 0.45
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (43 bp):
AATTTAAAAAAGCTCATCTAAGCAGAAGCTCAATAACTTTAAA
Found at i:4283129 original size:99 final size:99
Alignment explanation
Indices: 4282986--4283167 Score: 274
Period size: 99 Copynumber: 1.8 Consensus size: 99
4282976 AGAATATATG
* * * * * ** * * *
4282986 AATGACTTCGGATATTGTCATCGAAGAAAACTCGAATATCACCATTGAGAAAATGTAATTCAAGC
1 AATGACTTCAGATATCGCCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCAAATCAAGC
4283051 TTTAACACTCGGATATCACCATTGAGAATAAGCA
66 TTTAACACTCGGATATCACCATTGAGAATAAGCA
4283085 AATGACTTCAGATATCGCCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCAAATCAAGC
1 AATGACTTCAGATATCGCCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCAAATCAAGC
4283150 TTTAACACTCGGATATCA
66 TTTAACACTCGGATATCA
4283168 TTACAAAATG
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 73 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (99 bp):
AATGACTTCAGATATCGCCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCAAATCAAGC
TTTAACACTCGGATATCACCATTGAGAATAAGCA
Found at i:4283203 original size:165 final size:166
Alignment explanation
Indices: 4283013--4283333 Score: 421
Period size: 165 Copynumber: 1.9 Consensus size: 166
4283003 TCATCGAAGA
** * * **
4283013 AAACTCGAATATCACCATTGAGAAAATGTAATTCAAGCTTTAACACTCGGATATCACCATTGAG-
1 AAACTCGAATATCACCATTGAGAAAATACAAATCAAGCTTTAACACTCGAATATCACCACCGAGA
*
4283077 AATAAGCAAATGACTTCAGATATCGCCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCA
66 AAT-AGCAAATGACTTCAGATATCACCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCA
*
4283142 A-ATCAAGCTTTAACACTCGGATATCATTACAAAATG
130 ATATCAAGCTTTAACACTCAGATATCATTACAAAATG
* *
4283178 AAACTCGAATATCATCATTGAGAAAATACAAATCCAGCTTTAACACTCGAATATCACCACCGAGA
1 AAACTCGAATATCACCATTGAGAAAATACAAATCAAGCTTTAACACTCGAATATCACCACCGAGA
* * * ** * * **
4283243 AATTGGAAATGACTTCGGATATCACCATTGAAGGAAACTCAAATATCACCATTAAGCAAATGCAA
66 AATAGCAAATGACTTCAGATATCACCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCAA
* **
4283308 TTTCAATTTTTAACACTCAGATATCA
131 TATCAAGCTTTAACACTCAGATATCA
4283334 CCACCAACAA
Statistics
Matches: 132, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
165 108 0.82
166 24 0.18
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (166 bp):
AAACTCGAATATCACCATTGAGAAAATACAAATCAAGCTTTAACACTCGAATATCACCACCGAGA
AATAGCAAATGACTTCAGATATCACCACCGAAGAAAACTCAAATATCACCATAAAAAAAATGCAA
TATCAAGCTTTAACACTCAGATATCATTACAAAATG
Found at i:4283349 original size:43 final size:40
Alignment explanation
Indices: 4283279--4283376 Score: 101
Period size: 43 Copynumber: 2.4 Consensus size: 40
4283269 ATTGAAGGAA
* ** *
4283279 ACTCAAATATCACCATTAAGCAAATGCAATTTCAATTTTTAAC
1 ACTCAGATATCACCACCAAGCAAATGCAA-AT-AA-TTTTAAC
4283322 ACTCAGATATCACCACCAA-CAAGATGCAAATAATTTTAAC
1 ACTCAGATATCACCACCAAGCAA-ATGCAAATAATTTTAAC
4283362 ACTC-GAATATCACCA
1 ACTCAG-ATATCACCA
4283377 TCGAAGGAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
39 1 0.02
40 20 0.41
41 2 0.04
42 4 0.08
43 22 0.45
ACGTcount: A:0.43, C:0.24, G:0.06, T:0.27
Consensus pattern (40 bp):
ACTCAGATATCACCACCAAGCAAATGCAAATAATTTTAAC
Found at i:4283502 original size:99 final size:99
Alignment explanation
Indices: 4283177--4283541 Score: 362
Period size: 99 Copynumber: 3.6 Consensus size: 99
4283167 ATTACAAAAT
* * * *
4283177 GAAACTCGAATATCATCATTGAGAAAATACAAA-TCCAGCTTTAACACTCGAATATCACCACCGA
1 GAAACTCGAATATCACCATCGAGAAAATGCAAATTCAAGCTTTAACACTCGAATATCACCACCGA
* * * *
4283241 GAAATTGGAAATGACTTCGGATATCACCATTGAAG
66 GAAA-TGCAAATAACTTTGGATATCACCATCGAAG
* ** * * ** *
4283276 GAAACTCAAATATCACCATTAAGCAAATGCAATTTCAATTTTTAACACTC-AGATATCACCACCA
1 GAAACTCGAATATCACCATCGAGAAAATGCAAATTCAAGCTTTAACACTCGA-ATATCACCACCG
* * *
4283340 ACAAGATGCAAATAATTTTAACACTCGAATATCACCATCGAAG
65 AGAA-ATGCAAATAA-CTT-----T-GGATATCACCATCGAAG
* * *
4283383 GAAACTCGAATATCATCATCGAGAAAATGCAAATT-AAGCTTTAACACTC-AGATATCACTACTG
1 GAAACTCGAATATCACCATCGAGAAAATGCAAATTCAAGCTTTAACACTCGA-ATATCACCACCG
* *
4283446 AGAATATGCAAATAACTTTGGATATCGCCACCGAAG
65 AGAA-ATGCAAATAACTTTGGATATCACCATCGAAG
*
4283482 GAAACTCGAATATCACCATCGAGCAAATGC-AATTCAAGCTTTAACACTCGAATATCACCA
1 GAAACTCGAATATCACCATCGAGAAAATGCAAATTCAAGCTTTAACACTCGAATATCACCA
4283542 TCAAAGGAAA
Statistics
Matches: 217, Mismatches: 37, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
98 4 0.02
99 92 0.42
100 36 0.17
101 3 0.01
105 2 0.01
106 36 0.17
107 44 0.20
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (99 bp):
GAAACTCGAATATCACCATCGAGAAAATGCAAATTCAAGCTTTAACACTCGAATATCACCACCGA
GAAATGCAAATAACTTTGGATATCACCATCGAAG
Found at i:4283539 original size:165 final size:165
Alignment explanation
Indices: 4283322--4283706 Score: 524
Period size: 165 Copynumber: 2.3 Consensus size: 165
4283312 AATTTTTAAC
* * * * *
4283322 ACTCAGATATCACCA-CCAACAAGATGCAAAT-AA-TTTTAACACTCGAATATCACCATCGAAGG
1 ACTCAAATATCACCATCGAGCAA-ATGCAAATCAAGCTTTAACACTCGAATATCACCATCAAAGG
* * * * * **
4283384 AAACTCGAATATCATCATCGAGAAAATGCAAATTAAGCTTTAACACTCAGATATCACTACTGAGA
65 AAACTCAAATATCATCATCAAGAAAATGCAAATCAAACTTTAACACTCAGATATCACCACCAAGA
*
4283449 ATATGCAAATAACTTTGGATATCGCCACCGAAGGAA
130 ATATGCAAATAACTTCGGATATCGCCACCGAAGGAA
* *
4283485 ACTCGAATATCACCATCGAGCAAATGCAATTCAAGCTTTAACACTCGAATATCACCATCAAAGGA
1 ACTCAAATATCACCATCGAGCAAATGCAAATCAAGCTTTAACACTCGAATATCACCATCAAAGGA
*
4283550 AACTCAAATATCATCATCAAGAAAATGCAAATCAAACTTTAACACTCGGATATCACCACCAAGAA
66 AACTCAAATATCATCATCAAGAAAATGCAAATCAAACTTTAACACTCAGATATCACCACCAAGAA
* * *
4283615 TATGCAAATGACTTCGGATATCGGCACTGAAGGAA
131 TATGCAAATAACTTCGGATATCGCCACCGAAGGAA
* * * * *
4283650 ACTTAAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACTCTTGGATATCACCA
1 ACTCAAATATCACCATCGAGCAAATGCAAATCAAGCTTTAACACTCGAATATCACCA
4283707 CCAAGAAGAT
Statistics
Matches: 193, Mismatches: 26, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
163 20 0.10
164 7 0.04
165 166 0.86
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.23
Consensus pattern (165 bp):
ACTCAAATATCACCATCGAGCAAATGCAAATCAAGCTTTAACACTCGAATATCACCATCAAAGGA
AACTCAAATATCATCATCAAGAAAATGCAAATCAAACTTTAACACTCAGATATCACCACCAAGAA
TATGCAAATAACTTCGGATATCGCCACCGAAGGAA
Found at i:4283576 original size:66 final size:66
Alignment explanation
Indices: 4283479--4283607 Score: 195
Period size: 66 Copynumber: 2.0 Consensus size: 66
4283469 ATCGCCACCG
* * * * *
4283479 AAGGAAACTCGAATATCACCATCGAGCAAATGCAATTCAAGCTTTAACACTCGAATATCACCATC
1 AAGGAAACTCAAATATCACCATCAAGAAAATGCAAATCAAACTTTAACACTCGAATATCACCATC
4283544 A
66 A
* *
4283545 AAGGAAACTCAAATATCATCATCAAGAAAATGCAAATCAAACTTTAACACTCGGATATCACCA
1 AAGGAAACTCAAATATCACCATCAAGAAAATGCAAATCAAACTTTAACACTCGAATATCACCA
4283608 CCAAGAATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.44, C:0.24, G:0.11, T:0.21
Consensus pattern (66 bp):
AAGGAAACTCAAATATCACCATCAAGAAAATGCAAATCAAACTTTAACACTCGAATATCACCATC
A
Found at i:4283704 original size:99 final size:99
Alignment explanation
Indices: 4283544--4284053 Score: 556
Period size: 99 Copynumber: 5.1 Consensus size: 99
4283534 TATCACCATC
* * * * * *
4283544 AAAGGAAACTCAAATATCATCATCAAGAAAATGCAAATCAAACTTTAACACTCGGATATCACCAC
1 AAAGGAAACTCGAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACACTCGGATATCACCAC
*
4283609 CAAGAATATGCAAATGACTTCGGATATCGGCACT
66 CAAGAATATGCAAATGACTTCGGATATCGCCACT
* ** * *
4283643 GAAGGAAACTTAAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACTCTTGGATATCACCAC
1 AAAGGAAACTCGAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACACTCGGATATCACCAC
* * * *
4283708 CAAGAAGATGCAAATAATTTTACAACTCGGATATCACCA-T
66 CAAGAATATGC--A-AA--TGAC--TTCGGATATCGCCACT
* * * * *
4283748 CAAAGGAAACTCGAATATCATCATCGAGAAAATGCAAATCAAGGTTTAACACTCAGATATCACCA
1 -AAAGGAAACTCGAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACACTCGGATATCACCA
* * *
4283813 CTGAA-AATATACAAATGACTTCGGATATCGTCACT
65 C-CAAGAATATGCAAATGACTTCGGATATCGCCACT
* * * * *
4283848 GAAGAAAACTCGAATATCAACATCGAGCAAATGTAATTCAAGCTTTAACACTTGGATATCACCAC
1 AAAGGAAACTCGAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACACTCGGATATCACCAC
* *
4283913 CGAGAATATGCAAATGACTTCGGATATCGCCATT
66 CAAGAATATGCAAATGACTTCGGATATCGCCACT
* * *
4283947 AAAAGAAACTCGAATATCACCATCGAGCAAATGTAATTCAAGCTTTAACACTCGGATATCACCAT
1 AAAGGAAACTCGAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACACTCGGATATCACCAC
** * * * *
4284012 TGAGAATATACAAATGATTTTGGATATCGCCACC
66 CAAGAATATGCAAATGACTTCGGATATCGCCACT
*
4284046 AAAAGAAA
1 AAAGGAAA
4284054 TTGATCTTAA
Statistics
Matches: 343, Mismatches: 57, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
98 1 0.00
99 255 0.74
100 1 0.00
101 4 0.01
102 2 0.01
103 2 0.01
104 4 0.01
105 1 0.00
106 71 0.21
107 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (99 bp):
AAAGGAAACTCGAATATCACCATCGAGCAAATGTAAATCAAGCTTTAACACTCGGATATCACCAC
CAAGAATATGCAAATGACTTCGGATATCGCCACT
Found at i:4283780 original size:205 final size:199
Alignment explanation
Indices: 4283525--4284040 Score: 676
Period size: 205 Copynumber: 2.6 Consensus size: 199
4283515 TCAAGCTTTA
* * * *
4283525 ACACTCGAATATCACCATCAAAGGAAACTCAAATATCATCATCAAGAAAATGCAAATCAAACTTT
1 ACACTCGGATATCACCATCAAAGGAAACTCGAATATCATCATCGAGAAAATGCAAATCAAGCTTT
* * *
4283590 AACACTCGGATATCACCACCAAGAATATGCAAATGACTTCGGATATCGGCACTGAAGGAAACTTA
66 AACACTCGGATATCACCACCAAGAATATACAAATGACTTCGGATATCGGCACTGAAGAAAACTCA
* *
4283655 AATATCACCATCGAGCAAATGTAAATCAAGCTTTAACTCTTGGATATCACCACCAAGAAGATGCA
131 AATATCAACATCGAGCAAATGTAAATCAAGCTTTAACACTTGGATATCACCACCAAGAAGATGC-
*
4283720 AATAATTTT
195 -A-AA--TG
*
4283729 ACAACTCGGATATCACCATCAAAGGAAACTCGAATATCATCATCGAGAAAATGCAAATCAAGGTT
1 AC-ACTCGGATATCACCATCAAAGGAAACTCGAATATCATCATCGAGAAAATGCAAATCAAGCTT
* * *
4283794 TAACACTCAGATATCACCACTGAA-AATATACAAATGACTTCGGATATCGTCACTGAAGAAAACT
65 TAACACTCGGATATCACCAC-CAAGAATATACAAATGACTTCGGATATCGGCACTGAAGAAAACT
* * * *
4283858 CGAATATCAACATCGAGCAAATGTAATTCAAGCTTTAACACTTGGATATCACCACCGAGAATATG
129 CAAATATCAACATCGAGCAAATGTAAATCAAGCTTTAACACTTGGATATCACCACCAAGAAGATG
4283923 CAAATG
194 CAAATG
* * * * * * * *
4283929 AC-TTCGGATATCGCCATTAAAAGAAACTCGAATATCACCATCGAGCAAATGTAATTCAAGCTTT
1 ACACTCGGATATCACCATCAAAGGAAACTCGAATATCATCATCGAGAAAATGCAAATCAAGCTTT
*** * *
4283993 AACACTCGGATATCACCATTGAGAATATACAAATGATTTTGGATATCG
66 AACACTCGGATATCACCACCAAGAATATACAAATGACTTCGGATATCG
4284041 CCACCAAAAG
Statistics
Matches: 276, Mismatches: 33, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
197 1 0.00
198 93 0.34
200 3 0.01
202 2 0.01
203 1 0.00
204 2 0.01
205 172 0.62
206 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (199 bp):
ACACTCGGATATCACCATCAAAGGAAACTCGAATATCATCATCGAGAAAATGCAAATCAAGCTTT
AACACTCGGATATCACCACCAAGAATATACAAATGACTTCGGATATCGGCACTGAAGAAAACTCA
AATATCAACATCGAGCAAATGTAAATCAAGCTTTAACACTTGGATATCACCACCAAGAAGATGCA
AATG
Found at i:4284389 original size:35 final size:35
Alignment explanation
Indices: 4284338--4284427 Score: 108
Period size: 35 Copynumber: 2.6 Consensus size: 35
4284328 TGATGTAAAA
* * * *
4284338 GAAATGCAAATTTTTTTTTCTTAAATGATGCTCAT
1 GAAATGAAAATGTTTTTTTCTTAAAAGATGCACAT
* *
4284373 GAGATGAAAATGTTTTTTTTTTAAAAGATGCACAT
1 GAAATGAAAATGTTTTTTTCTTAAAAGATGCACAT
* *
4284408 GAAATGCAAATGTCTTTTTC
1 GAAATGAAAATGTTTTTTTC
4284428 AAAAATACTA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.42
Consensus pattern (35 bp):
GAAATGAAAATGTTTTTTTCTTAAAAGATGCACAT
Found at i:4285376 original size:15 final size:16
Alignment explanation
Indices: 4285358--4285393 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
4285348 TTTTCTCTTA
*
4285358 TTTTTC-TTTCTTTCT
1 TTTTTCTTTTCTTCCT
4285373 TTTTTCTTTTCTTCCT
1 TTTTTCTTTTCTTCCT
4285389 TTTTT
1 TTTTT
4285394 TTAACGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCTTTTCTTCCT
Found at i:4286057 original size:11 final size:11
Alignment explanation
Indices: 4286032--4286085 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
4286022 TTATCACCTC
**
4286032 TTTTTTTCTCA
1 TTTTTTTCTTT
4286043 TTTTTTTCTTT
1 TTTTTTTCTTT
4286054 TTTTTTTACTTT
1 TTTTTTT-CTTT
*
4286066 TTTTATTGCTTT
1 TTTT-TTTCTTT
*
4286078 ATTTTTTC
1 TTTTTTTC
4286086 ACTTTCTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 19 0.53
12 15 0.42
13 2 0.06
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:4286058 original size:12 final size:12
Alignment explanation
Indices: 4286043--4286090 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
4286033 TTTTTTCTCA
4286043 TTTTTTT-CTTT
1 TTTTTTTACTTT
4286054 TTTTTTTACTTT
1 TTTTTTTACTTT
* *
4286066 TTTTATTGCTTT
1 TTTTTTTACTTT
*
4286078 ATTTTTTCACTTT
1 -TTTTTTTACTTT
4286091 CTCTTTTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
11 7 0.23
12 14 0.47
13 9 0.30
ACGTcount: A:0.08, C:0.10, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTTTTACTTT
Found at i:4286066 original size:19 final size:19
Alignment explanation
Indices: 4286030--4286068 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
4286020 ATTTATCACC
*
4286030 TCTTTTTTTCTCATTTTTT
1 TCTTTTTTTCTCACTTTTT
* *
4286049 TCTTTTTTTTTTACTTTTT
1 TCTTTTTTTCTCACTTTTT
4286068 T
1 T
4286069 TATTGCTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (19 bp):
TCTTTTTTTCTCACTTTTT
Found at i:4290572 original size:14 final size:15
Alignment explanation
Indices: 4290553--4290585 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
4290543 TTATTCTTAA
4290553 TTTATTAGTT-AATT
1 TTTATTAGTTAAATT
*
4290567 TTTATTATTTAAATT
1 TTTATTAGTTAAATT
4290582 TTTA
1 TTTA
4290586 ACAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTATTAGTTAAATT
Found at i:4290954 original size:19 final size:18
Alignment explanation
Indices: 4290930--4290968 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
4290920 CATAAATATT
*
4290930 AATAAAATAATATATAAAA
1 AATAAAAAAAT-TATAAAA
*
4290949 AATAAAAAAATTTTAAAA
1 AATAAAAAAATTATAAAA
4290967 AA
1 AA
4290969 AACTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AATAAAAAAATTATAAAA
Found at i:4291869 original size:20 final size:20
Alignment explanation
Indices: 4291835--4291878 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
4291825 ATGCCAAAAA
4291835 AAAAAAGAAAGATAAAAAGAT
1 AAAAAAGAAAGATAAAAAG-T
*
4291856 AAAAAATAAA-ATAAAAAGT
1 AAAAAAGAAAGATAAAAAGT
4291875 AAAA
1 AAAA
4291879 TGTGTCTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.23
20 8 0.36
21 9 0.41
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (20 bp):
AAAAAAGAAAGATAAAAAGT
Found at i:4292262 original size:24 final size:24
Alignment explanation
Indices: 4292220--4292287 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
4292210 TTTATTAAAC
*
4292220 TTAATTTTAACTTTGATAT-CA-TTT
1 TTAATTTTAA-TTT-ATATATATTTT
*
4292244 TTATTTTTAATTTATATATATTTT
1 TTAATTTTAATTTATATATATTTT
*
4292268 TTAATTTTAATTTTTATATA
1 TTAATTTTAATTTATATATA
4292288 CATGTGAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.11
23 4 0.11
24 30 0.79
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (24 bp):
TTAATTTTAATTTATATATATTTT
Found at i:4293401 original size:10 final size:10
Alignment explanation
Indices: 4293381--4293413 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
4293371 TCAAACCGAA
4293381 TTATATATTT
1 TTATATATTT
4293391 TTAT-TAGTTT
1 TTATATA-TTT
4293401 TTATATATTT
1 TTATATATTT
4293411 TTA
1 TTA
4293414 AATTTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.10
10 17 0.81
11 2 0.10
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (10 bp):
TTATATATTT
Found at i:4293762 original size:13 final size:13
Alignment explanation
Indices: 4293730--4293754 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4293720 ACAATTGTCA
4293730 AAAAAAATAAAAG
1 AAAAAAATAAAAG
4293743 AAAAAAATAAAA
1 AAAAAAATAAAA
4293755 ATAAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.04, T:0.08
Consensus pattern (13 bp):
AAAAAAATAAAAG
Found at i:4293963 original size:2 final size:2
Alignment explanation
Indices: 4293956--4293982 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4293946 ATTAGTTTTA
4293956 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
4293983 TCTTTTGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4295642 original size:2 final size:2
Alignment explanation
Indices: 4295637--4295676 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
4295627 AAAAAAAATT
4295637 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4295677 ACCTACGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4298293 original size:16 final size:16
Alignment explanation
Indices: 4298264--4298297 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4298254 TAAAGGTTTT
*
4298264 AATTTTAATATTATTA
1 AATTTAAATATTATTA
*
4298280 AATTTAAATTTTATTA
1 AATTTAAATATTATTA
4298296 AA
1 AA
4298298 AACCTTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTAAATATTATTA
Found at i:4299008 original size:26 final size:26
Alignment explanation
Indices: 4298925--4299005 Score: 103
Period size: 26 Copynumber: 3.1 Consensus size: 26
4298915 AAAAATATTG
* *
4298925 AAATAATTTTTGTTGATATAATATAAT
1 AAATAATTTTTATT-ATATAATAAAAT
4298952 AAATAATTTTTATTATATAAT-AAAT
1 AAATAATTTTTATTATATAATAAAAT
4298977 AAATAATTTTTTATTACT-TAATAAAAT
1 AAATAA-TTTTTATTA-TATAATAAAAT
4299004 AA
1 AA
4299006 TAAATGTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
25 9 0.18
26 20 0.41
27 20 0.41
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.47
Consensus pattern (26 bp):
AAATAATTTTTATTATATAATAAAAT
Found at i:4302648 original size:30 final size:30
Alignment explanation
Indices: 4302614--4302679 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 30
4302604 TATTTGATAT
* *
4302614 TTTTATATTTAGCAGGTTTTTTAATGTATA
1 TTTTATATTTAGCAAGTTTTTTAATGCATA
*
4302644 -TTT-TATTTAGCAATTTTTTTAATGCATA
1 TTTTATATTTAGCAAGTTTTTTAATGCATA
*
4302672 TATTATAT
1 TTTTATAT
4302680 ATCAAGATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 22 0.73
29 5 0.17
30 3 0.10
ACGTcount: A:0.29, C:0.05, G:0.09, T:0.58
Consensus pattern (30 bp):
TTTTATATTTAGCAAGTTTTTTAATGCATA
Found at i:4307072 original size:19 final size:19
Alignment explanation
Indices: 4307048--4307097 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
4307038 GTTAACCATC
4307048 AGAGCTTTTAGCGATAACT
1 AGAGCTTTTAGCGATAACT
4307067 AGAGCTTTTAGCGATAACT
1 AGAGCTTTTAGCGATAACT
4307086 AGAGCTTTTAGC
1 AGAGCTTTTAGC
4307098 TTCAGTCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (19 bp):
AGAGCTTTTAGCGATAACT
Found at i:4307244 original size:26 final size:25
Alignment explanation
Indices: 4307222--4307279 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
4307212 AAAAATATTG
*
4307222 AAATAATTTTTGTTGATATAATATAAT
1 AAATAATTTTTATT-ATATAATAT-AT
*
4307249 AAATAATTTTTATTATATAATAAAT
1 AAATAATTTTTATTATATAATATAT
*
4307274 TAATAA
1 AAATAA
4307280 ATAAATAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 7 0.25
26 8 0.29
27 13 0.46
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (25 bp):
AAATAATTTTTATTATATAATATAT
Found at i:4307310 original size:36 final size:33
Alignment explanation
Indices: 4307240--4307350 Score: 116
Period size: 33 Copynumber: 3.2 Consensus size: 33
4307230 TTTGTTGATA
4307240 TAATATAATAAATAATTTTTATTATATAATAAAT
1 TAATA-AATAAATAATTTTTATTATATAATAAAT
*
4307274 TAATAAATAAATAATTTTTTGTGTCATATAATAAAT
1 TAATAAATAAATAA-TTTTTAT-T-ATATAATAAAT
* * * * *
4307310 TAATAAATTAATTATATGTATTA-ATAAATTAAT
1 TAATAAATAAATAATTTTTATTATAT-AATAAAT
4307343 TAATAAAT
1 TAATAAAT
4307351 GTTATAAATA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 2 0.03
33 24 0.36
34 12 0.18
35 5 0.08
36 23 0.35
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (33 bp):
TAATAAATAAATAATTTTTATTATATAATAAAT
Found at i:4307359 original size:21 final size:20
Alignment explanation
Indices: 4307302--4307350 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
4307292 TTGTGTCATA
4307302 TAATAAATTAATAAATTAAT
1 TAATAAATTAATAAATTAAT
**
4307322 TATATGTATTAATAAATTAAT
1 TA-ATAAATTAATAAATTAAT
4307343 TAATAAAT
1 TAATAAAT
4307351 GTTATAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
TAATAAATTAATAAATTAAT
Found at i:4309609 original size:95 final size:95
Alignment explanation
Indices: 4309483--4309684 Score: 255
Period size: 95 Copynumber: 2.1 Consensus size: 95
4309473 AAGAATTTCA
* * * *
4309483 TAATGAAATTTCATGAAAAAATAAAAATTTCAATCCTATTAAA-TATTAGAGGATTTAAATTTCT
1 TAATGAATTTTTATGAAAAAATAAAAATTTCAATCCTATCAAACTATTAGAGGATTTAAATCTC-
* * * *
4309547 AAATTAAATATTGCTAAACTATTGGAAGATT
65 AAATTAAATATTACCAAACTATAGAAAGATT
* * *
4309578 TAAT-AATTTTTATGAAGAAAATAAAATTTTCAATCCTGTCAAACTATTGGAGGATTTAAATCTC
1 TAATGAATTTTTATGAA-AAAATAAAAATTTCAATCCTATCAAACTATTAGAGGATTTAAATCTC
* *
4309642 GAATTAAATTTTACCAAACTATAGAAAGATT
65 AAATTAAATATTACCAAACTATAGAAAGATT
4309673 TAATGAATTTTT
1 TAATGAATTTTT
4309685 TCAAAATTTC
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
94 10 0.11
95 56 0.62
96 25 0.27
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (95 bp):
TAATGAATTTTTATGAAAAAATAAAAATTTCAATCCTATCAAACTATTAGAGGATTTAAATCTCA
AATTAAATATTACCAAACTATAGAAAGATT
Found at i:4311941 original size:16 final size:17
Alignment explanation
Indices: 4311913--4311944 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4311903 AGGGATTTAA
4311913 TTAATTAATTTTTATTT
1 TTAATTAATTTTTATTT
4311930 TTAATT-ATTTTTATT
1 TTAATTAATTTTTATT
4311945 ATATTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTAATTAATTTTTATTT
Found at i:4312270 original size:3 final size:3
Alignment explanation
Indices: 4312257--4312334 Score: 81
Period size: 3 Copynumber: 26.0 Consensus size: 3
4312247 CTTAAACAAT
* *
4312257 TTA TTA TTTA TTA TT- TTA TTTA TCT- TTT TTA TAA TT- TTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA
*
4312302 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4312335 GCAAGAATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
2 5 0.08
3 52 0.81
4 7 0.11
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4312430 original size:3 final size:3
Alignment explanation
Indices: 4312422--4312449 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
4312412 TCCTTAAATA
4312422 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
4312450 TTGTATATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:4312615 original size:20 final size:21
Alignment explanation
Indices: 4312559--4312617 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
4312549 ATAATAATAT
* *
4312559 CAAAAAATAAATAAACAACAG
1 CAAAAAATAAAAAAATAACAG
* *
4312580 AAAAAAATAAACAAATAACA-
1 CAAAAAATAAAAAAATAACAG
4312600 CAAAAAATAAAAAAATAA
1 CAAAAAATAAAAAAATAA
4312618 AAAAAGGGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.78, C:0.10, G:0.02, T:0.10
Consensus pattern (21 bp):
CAAAAAATAAAAAAATAACAG
Found at i:4313666 original size:40 final size:40
Alignment explanation
Indices: 4313622--4313745 Score: 128
Period size: 40 Copynumber: 3.1 Consensus size: 40
4313612 TTTTTAAAGA
4313622 AAATTTGAAAGGCTCCTTTAAACAGAGGCTATGAAAATTT
1 AAATTTGAAAGGCTCCTTTAAACAGAGGCTATGAAAATTT
* * * * * ** *
4313662 AAATTT-AAAAGATCCTCT-GACTAGAGAC-AACAAAGTTT
1 AAATTTGAAAGGCTCCTTTAAAC-AGAGGCTATGAAAATTT
*
4313700 AAATGTTGAAAGGCTCCTTTAAACAGAGGCTATGAAACTTT
1 AAAT-TTGAAAGGCTCCTTTAAACAGAGGCTATGAAAATTT
4313741 AAATT
1 AAATT
4313746 CAAAAGGATC
Statistics
Matches: 63, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
38 13 0.21
39 16 0.25
40 21 0.33
41 13 0.21
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (40 bp):
AAATTTGAAAGGCTCCTTTAAACAGAGGCTATGAAAATTT
Found at i:4313767 original size:40 final size:40
Alignment explanation
Indices: 4313644--4313767 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 40
4313634 CTCCTTTAAA
4313644 CAGAGGCTATGAAAATTTAAATTTAAAA-GATCCTCTGAC
1 CAGAGGCTATGAAAATTTAAATTTAAAAGGATCCTCTGAC
* * ** * * * * * *
4313683 TAGAGAC-AACAAAGTTTAAATGTTGAAAGGCTCCTTTAAA
1 CAGAGGCTATGAAAATTTAAAT-TTAAAAGGATCCTCTGAC
* *
4313723 CAGAGGCTATGAAACTTTAAATTCAAAAGGATCCTCTGAC
1 CAGAGGCTATGAAAATTTAAATTTAAAAGGATCCTCTGAC
4313763 CAGAG
1 CAGAG
4313768 ACAACAAACT
Statistics
Matches: 61, Mismatches: 21, Indels: 5
0.70 0.24 0.06
Matches are distributed among these distances:
38 11 0.18
39 10 0.16
40 29 0.48
41 11 0.18
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (40 bp):
CAGAGGCTATGAAAATTTAAATTTAAAAGGATCCTCTGAC
Found at i:4313792 original size:40 final size:39
Alignment explanation
Indices: 4313659--4313824 Score: 138
Period size: 40 Copynumber: 4.2 Consensus size: 39
4313649 GCTATGAAAA
* * *
4313659 TTTAAATTT-AAAAGATCCTCTGACTAGAGACAACAAAG
1 TTTAAATTTGAAAGGATCCTCTGACCAGAGACAACAAAC
* * * * * **
4313697 TTTAAATGTTGAAAGGCTCCTTTAAACAGAGGCTATGAAAC
1 TTTAAAT-TTGAAAGGATCCTCTGACCAGAGAC-AACAAAC
**
4313738 TTTAAATTCAAAAGGATCCTCTGACCAGAGACAACAAAC
1 TTTAAATTTGAAAGGATCCTCTGACCAGAGACAACAAAC
* * * *
4313777 TTTAAATGTTGAAAGGCAT-TTCTCACCAGAGGCAACGAAC
1 TTTAAAT-TTGAAAGG-ATCCTCTGACCAGAGACAACAAAC
4313817 TTTAAATT
1 TTTAAATT
4313825 AAAAATGCTC
Statistics
Matches: 98, Mismatches: 25, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
38 7 0.07
39 15 0.15
40 63 0.64
41 13 0.13
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (39 bp):
TTTAAATTTGAAAGGATCCTCTGACCAGAGACAACAAAC
Found at i:4313807 original size:80 final size:78
Alignment explanation
Indices: 4313622--4313862 Score: 272
Period size: 79 Copynumber: 3.1 Consensus size: 78
4313612 TTTTTAAAGA
* * *
4313622 AAAT-TTGAAAGGCTCCTTTAAACAGAGGCTATGAAAATTTAAATTTAAAAGATCCTCTGACTAG
1 AAATGTTGAAAGGCT-CTTTAAACAGAGGCTATGAAACTTTAAATTAAAAAGATCCTCTGACCAG
*
4313686 AGACAACAAAGTTT
65 AGACAACAAACTTT
*
4313700 AAATGTTGAAAGGCTCCTTTAAACAGAGGCTATGAAACTTTAAATTCAAAAGGATCCTCTGACCA
1 AAATGTTGAAAGGCT-CTTTAAACAGAGGCTATGAAACTTTAAATT-AAAAAGATCCTCTGACCA
4313765 GAGACAACAAACTTT
64 GAGACAACAAACTTT
* * * * * * * *
4313780 AAATGTTGAAAGGCAT-TTCTCACCAGAGGCAACG-AACTTTAAATTAAAAATGCTCATTTAACC
1 AAATGTTGAAAGGC-TCTT-TAAACAGAGGCTATGAAACTTTAAATTAAAAA-GATCCTCTGACC
* *
4313843 AAAGACAATAAACTTT
63 AGAGACAACAAACTTT
4313859 AAAT
1 AAAT
4313863 TCAAAATGCT
Statistics
Matches: 142, Mismatches: 16, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 8 0.06
79 79 0.56
80 54 0.38
81 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.27
Consensus pattern (78 bp):
AAATGTTGAAAGGCTCTTTAAACAGAGGCTATGAAACTTTAAATTAAAAAGATCCTCTGACCAGA
GACAACAAACTTT
Found at i:4313869 original size:39 final size:39
Alignment explanation
Indices: 4313814--4313900 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 39
4313804 AGAGGCAACG
4313814 AACTTTAAATTAAAAATGCTCATTTAACCAAA-GACAATA
1 AACTTTAAATTAAAAATGCTCATTTAACCAAAGGA-AATA
* * *
4313853 AACTTTAAATTCAAAATGCTCTTTTAACTAAAGGAAATA
1 AACTTTAAATTAAAAATGCTCATTTAACCAAAGGAAATA
4313892 AACTTTAAA
1 AACTTTAAA
4313901 AGTTAAAAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 42 0.95
40 2 0.05
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (39 bp):
AACTTTAAATTAAAAATGCTCATTTAACCAAAGGAAATA
Found at i:4326006 original size:216 final size:216
Alignment explanation
Indices: 4325611--4326011 Score: 496
Period size: 216 Copynumber: 1.9 Consensus size: 216
4325601 AATTTTAAAG
* *
4325611 AAAAAGAAATTTTTATTATATTGAAGATTTTTCATAAATATTCCAATACACTGGTAATATTTAAA
1 AAAAAGAAATTTTTATTATATCGAAGATTTTTCATAAATATTCCAATACACTAGTAATATTTAAA
* * *
4325676 AAAAAATCTTCTCACTTAGAGATTTCATAAAGAATCACTACTTGGAATACTTTTAGAATCTCATC
66 AAAAAATCTTCTCACCTAGAGATTTCATAAAGAATCACTACTCGGAATACCTTTAGAATCTCATC
* * * **
4325741 ATTTAGTAAAATTTTCTTTTTCCTTATTTTTATTACTTTATTTTATTTTT-TTTATAAAAGTTAA
131 AATCAGTAAAATTTTCTTTTTCCTCATTTTTATTACTTTACATTATTTTTATTTATAAAAGTTAA
4325805 TTTTATTTTACTAGTTTTTAC
196 TTTTATTTTACTAGTTTTTAC
* * *
4325826 AAAAAGAAAATTTTTATTGTATCG-AGAATTTTTTATAAATACTT-CAATACACTAGTAGTATTT
1 AAAAAG-AAATTTTTATTATATCGAAG-ATTTTTCATAAATA-TTCCAATACACTAGTAATATTT
* * * *
4325889 -TAAAAAAATCTTCTCACCTAG-GAATTTCAT-AGGTATCACTACTCGGAGTACCTTT-GAATCT
63 AAAAAAAAATCTTCTCACCTAGAG-ATTTCATAAAGAATCACTACTCGGAATACCTTTAGAATCT
*
4325950 CAT-AATCAGATAAAAATTTTC-TTTTCCTACATTTTTTATTAATTTTACATTATTTTTATTTA
127 CATCAATCAG-T-AAAATTTTCTTTTTCCT-CA-TTTTTATT-ACTTTACATTATTTTTATTTA
4326012 ATTAAAAATT
Statistics
Matches: 158, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
212 4 0.03
213 17 0.11
214 31 0.20
215 42 0.27
216 58 0.37
217 6 0.04
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.45
Consensus pattern (216 bp):
AAAAAGAAATTTTTATTATATCGAAGATTTTTCATAAATATTCCAATACACTAGTAATATTTAAA
AAAAAATCTTCTCACCTAGAGATTTCATAAAGAATCACTACTCGGAATACCTTTAGAATCTCATC
AATCAGTAAAATTTTCTTTTTCCTCATTTTTATTACTTTACATTATTTTTATTTATAAAAGTTAA
TTTTATTTTACTAGTTTTTAC
Found at i:4326090 original size:17 final size:17
Alignment explanation
Indices: 4326068--4326102 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
4326058 ATCAAAAACG
4326068 TTTATTATATT-TTATTA
1 TTTATTA-ATTATTATTA
4326085 TTTATTAATTATTATTA
1 TTTATTAATTATTATTA
4326102 T
1 T
4326103 AAAACAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATTAATTATTATTA
Found at i:4327154 original size:3 final size:3
Alignment explanation
Indices: 4327140--4327174 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
4327130 AAAAATAACA
* *
4327140 AAT AAT ACT AAT AAT AAT AAT AAT GAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4327175 AAAATTTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4327419 original size:49 final size:48
Alignment explanation
Indices: 4327355--4328139 Score: 612
Period size: 48 Copynumber: 16.4 Consensus size: 48
4327345 TCATTTGAGT
* * * *
4327355 AGAGACTCAACAACTTTAAAATCTCATATTAAAAAAAGCTCCTTTAAGC
1 AGAGGCTCAACAACTTTAAAATCTCATCTT-GAAAAAGCTCCTCTAAGC
* * *
4327404 AGAGGCTCAATAACTTTAAAAATCT-ATCTTAAAAAAGCTCCTCTAAAC
1 AGAGGCTCAACAACTTT-AAAATCTCATCTTGAAAAAGCTCCTCTAAGC
* *
4327452 AGAGGCTCAACAACATT-AAA-CT--TTTTGAAAAAGCTCCTCTCAA-C
1 AGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCT-AAGC
* * * *
4327496 AGAGGCTTAACAAC-TTAAAAGTCTCATTTTGAAAAAAAGCTCCTTTCAGC
1 AGAGGCTCAACAACTTTAAAA-TCTCATCTTG--AAAAAGCTCCTCTAAGC
* * * *
4327546 AGAGACTCAACAACTTTAAAATTTTTATCTTGGAAAAGCTCCTCTCAA-C
1 AGAGGCTCAACAACTTTAAAA-TCTCATCTTGAAAAAGCTCCTCT-AAGC
* ** *
4327595 A-AGGCTTAACAACTTTAAAATTCTCATCTTGGCAAAGCTCCTCTAAGT
1 AGAGGCTCAACAACTTTAAAA-TCTCATCTTGAAAAAGCTCCTCTAAGC
* * *
4327643 AGAGGCT-TACTAACTTTAAAAAT-TCATCTTGGAAAAGCTCCTCTCAA-T
1 AGAGGCTCAAC-AACTTT-AAAATCTCATCTTGAAAAAGCTCCTCT-AAGC
* * ** *
4327691 AGAGGCTTAACAACATTAAAATCCTCATCTTGGCAAAGCTCCTCTAAGT
1 AGAGGCTCAACAACTTTAAAAT-CTCATCTTGAAAAAGCTCCTCTAAGC
* * * *
4327740 AGAGACTCAATAACTTT-AAA-CT--T-TGTAAAAAAGCTCCTCTAAAC
1 AGAGGCTCAACAACTTTAAAATCTCATCT-TGAAAAAGCTCCTCTAAGC
* * *
4327784 AGAGGCTCAACAACTTTAAAATTCTCATATT-AGAAAAGCTCCTCTCAGT
1 AGAGGCTCAACAACTTTAAAA-TCTCATCTTGA-AAAAGCTCCTCTAAGC
* * * * * *
4327833 AGAGGCTTAACAACTTTAAAA-ATCATCATGAAAAGGCTCATCTAAAC
1 AGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTAAGC
* * * **
4327880 TGAGGCTCAACAACTTTAAAAATC-CATCTTAAAAAAAGCTTCTCTAAAT
1 AGAGGCTCAACAACTTT-AAAATCTCATCTT-GAAAAAGCTCCTCTAAGC
* * * *
4327929 AGAGGCTCAACAACTTTAAAAAATTTCATCTTGAAAATGCTCCTATTAGC
1 AGAGGCTCAACAACTTT--AAAATCTCATCTTGAAAAAGCTCCTCTAAGC
* * * *
4327979 AGAGGCTGAACAACTTTAAAATCTCTTCTTGAAAAAGCTGCTCTCAGC
1 AGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTAAGC
* * * * * *
4328027 AGAGGCTTAACAAGTTTAAAA---AATATTGAAAAAGCTCTTCTCAGC
1 AGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTAAGC
* * *
4328072 AGATGCTCGACAACTTTAAAA-CTTTATCTTGAAAAAGGCTCCTCTCAA-C
1 AGAGGCTCAACAACTTTAAAATC-TCATCTTGAAAAA-GCTCCTCT-AAGC
4328121 AGAGGCTCAACAACTTTAA
1 AGAGGCTCAACAACTTTAA
4328140 CATTCCATCT
Statistics
Matches: 599, Mismatches: 97, Indels: 80
0.77 0.12 0.10
Matches are distributed among these distances:
43 3 0.01
44 63 0.11
45 43 0.07
46 7 0.01
47 40 0.07
48 180 0.30
49 172 0.29
50 72 0.12
51 19 0.03
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (48 bp):
AGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTAAGC
Found at i:4327959 original size:288 final size:284
Alignment explanation
Indices: 4327403--4328139 Score: 740
Period size: 288 Copynumber: 2.6 Consensus size: 284
4327393 CTCCTTTAAG
* * * * * *
4327403 CAGAGGCTCAATAACTTTAAAAATCT-ATCTTAAAAAAGCTCCTCTAAACAGAGGCTCAACAACA
1 CAGAGGCTGAACAACATT-AAAATCTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACT
* * * * *
4327467 TTAAACTTTTTGAAAAAGCTCCTCTCAACAGAGGCTTAACAAC-TTAAAAGTCTCATTTTGAAAA
65 TTAAACTTTGT-AAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTCTCATATT--AGA
* * * * * * *
4327531 AAAGCTCCTTTCAGCAGAGACTCAACAACTTTAAAATTTTTATCTTGGAAAAGCTCCTCTCAACA
127 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TATCATCATGGAAAAGCTCATCTAAACA
* * *** * *
4327596 AGGCTTAACAACTTTAAAATTCTCATCTTGGCAAAGCTCCTCTAAGTAGAGGCTTACTAACTTTA
191 AGGCTCAACAACTTTAAAAATCTCATCTTAAAAAAGCTCCTCTAAATAGAGGCTAACTAACTTTA
*
4327661 AAAATTCATCTTGGAAAA-GCTCCTCTCAA
256 AAAATTCATCTT-GAAAATGCTCCTATCAA
* * ** * * *
4327690 TAGAGGCTTAACAACATTAAAATCCTCATCTTGGCAAAGCTCCTCTAAGTAGAGACTCAATAACT
1 CAGAGGCTGAACAACATTAAAAT-CTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACT
*
4327755 TTAAACTTTGTAAAAAAGCTCCTCTAAACAGAGGCTCAACAACTTTAAAATTCTCATATTAGAAA
65 TTAAACTTTGT-AAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTCTCATATTAGAAA
* * *
4327820 AGCTCCTCTCAGTAGAGGCTTAACAACTTTAAAA-ATCATCAT-GAAAAGGCTCATCTAAACTGA
129 AGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATATCATCATGGAAAA-GCTCATCTAAAC-AA
*
4327883 GGCTCAACAACTTTAAAAATC-CATCTTAAAAAAAGCTTCTCTAAATAGAGGCTCAAC-AACTTT
192 GGCTCAACAACTTTAAAAATCTCATCTT-AAAAAAGCTCCTCTAAATAGAGGCT-AACTAACTTT
* *
4327946 AAAAAATTTCATCTTGAAAATGCTCCTATTAG
255 -AAAAA-TTCATCTTGAAAATGCTCCTATCAA
* * * * * *
4327978 CAGAGGCTGAACAACTTTAAAATCTCTTCTTGAAAAAGCTGCTCTCAGCAGAGGCTTAACAAGTT
1 CAGAGGCTGAACAACATTAAAATCTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTT
* * * * * *
4328043 TAAAAAATATTG-AAAAAGCTCTTCTCAGCAGATGCTCGACAACTTTAAAACTT-T-ATCTT-GA
66 T--AAACT-TTGTAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAA-TTCTCATATTAG-
*
4328104 AAAAGGCTCCTCTCAACAGAGGCTCAACAACTTTAA
126 AAAA-GCTCCTCTCAGCAGAGGCTCAACAACTTTAA
4328140 CATTCCATCT
Statistics
Matches: 371, Mismatches: 63, Indels: 31
0.80 0.14 0.07
Matches are distributed among these distances:
284 5 0.01
285 21 0.06
286 52 0.14
287 103 0.28
288 167 0.45
289 20 0.05
290 3 0.01
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (284 bp):
CAGAGGCTGAACAACATTAAAATCTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAACAACTT
TAAACTTTGTAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTCTCATATTAGAAAAG
CTCCTCTCAGCAGAGGCTCAACAACTTTAAAATATCATCATGGAAAAGCTCATCTAAACAAGGCT
CAACAACTTTAAAAATCTCATCTTAAAAAAGCTCCTCTAAATAGAGGCTAACTAACTTTAAAAAT
TCATCTTGAAAATGCTCCTATCAA
Found at i:4328071 original size:45 final size:45
Alignment explanation
Indices: 4327355--4328139 Score: 253
Period size: 49 Copynumber: 16.4 Consensus size: 45
4327345 TCATTTGAGT
* * * * *
4327355 AGAGACTCAACAACTTTAAAATCTCATATTAAAAAAAGCTCCTTTAAGC
1 AGAGGCTCAACAACTTTAAAA--TAATATT-GAAAAAGCT-CTCTCAGC
* * * * * *
4327404 AGAGGCTCAATAACTTTAAAAATCTATCTTAAAAAAGCTCCTCTAAAC
1 AGAGGCTCAACAACTTT-AAAAT-AATATTGAAAAAGCT-CTCTCAGC
* * * *
4327452 AGAGGCTCAACAACATTAAACT--TTTTGAAAAAGCTCCTCTCAAC
1 AGAGGCTCAACAACTTTAAAATAATATTGAAAAAGCT-CTCTCAGC
* * * *
4327496 AGAGGCTTAACAAC-TTAAAAGTCTCATTTTGAAAAAAAGCTCCTTTCAGC
1 AGAGGCTCAACAACTTTAAAA---TAATATTG--AAAAAGCT-CTCTCAGC
* * * * *
4327546 AGAGACTCAACAACTTTAAAATTTTTATCTTGGAAAAGCTCCTCTCAAC
1 AGAGGCTCAACAACTTTAAAA---TAATATTGAAAAAGCT-CTCTCAGC
* * * ** * *
4327595 A-AGGCTTAACAACTTTAAAATTCTCATCTTGGCAAAGCTCCTCTAAGT
1 AGAGGCTCAACAACTTTAAAA---TAATATTGAAAAAGCT-CTCTCAGC
* * * * **
4327643 AGAGGCT-TACTAACTTTAAAAATTCATCTTGGAAAAGCTCCTCTCAAT
1 AGAGGCTCAAC-AACTTT-AAAA-TAATATTGAAAAAGCT-CTCTCAGC
* * * * ** * *
4327691 AGAGGCTTAACAACATTAAAATCCTCATCTTGGCAAAGCTCCTCTAAGT
1 AGAGGCTCAACAACTTTAAAA---TAATATTGAAAAAGCT-CTCTCAGC
* * * * * *
4327740 AGAGACTCAATAACTTTAAACT--T-TGTAAAAAAGCTCCTCTAAAC
1 AGAGGCTCAACAACTTTAAAATAATAT-TGAAAAAGCT-CTCTCAGC
* *
4327784 AGAGGCTCAACAACTTTAAAATTCTCATATT-AGAAAAGCTCCTCTCAGT
1 AGAGGCTCAACAACTTTAAAA---TAATATTGA-AAAAGCT-CTCTCAGC
* * * * *
4327833 AGAGGCTTAACAACTTTAAAAATCATCA-TGAAAAGGCTCATCTAAAC
1 AGAGGCTCAACAACTTT-AAAATAAT-ATTGAAAAAGCTC-TCTCAGC
* * * * * **
4327880 TGAGGCTCAACAACTTTAAAAATCCATCTTAAAAAAAGCTTCTCTAAAT
1 AGAGGCTCAACAACTTT-AAAAT-AATATT-GAAAAAGC-TCTCTCAGC
* * *
4327929 AGAGGCTCAACAACTTTAAAA-AATTTCATCTTGAAAATGCTCCTATTAGC
1 AGAGGCTCAACAACTTTAAAATAA--T-A--TTGAAAAAGCT-CTCTCAGC
* ** *
4327979 AGAGGCTGAACAACTTTAAAATCTCTTCTTGAAAAAGCTGCTCTCAGC
1 AGAGGCTCAACAACTTTAAAA--TAATATTGAAAAAGCT-CTCTCAGC
* *
4328027 AGAGGCTTAACAAGTTTAAAA-AATATTGAAAAAGCTCTTCTCAGC
1 AGAGGCTCAACAACTTTAAAATAATATTGAAAAAGCTC-TCTCAGC
* * * * *
4328072 AGATGCTCGACAACTTTAAAACTTTATCTTGAAAAAGGCTCCTCTCAAC
1 AGAGGCTCAACAACTTTAAAA--TAATATTGAAAAA-GCT-CTCTCAGC
4328121 AGAGGCTCAACAACTTTAA
1 AGAGGCTCAACAACTTTAA
4328140 CATTCCATCT
Statistics
Matches: 587, Mismatches: 102, Indels: 94
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.01
44 66 0.11
45 36 0.06
46 4 0.01
47 45 0.08
48 170 0.29
49 171 0.29
50 73 0.12
51 16 0.03
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (45 bp):
AGAGGCTCAACAACTTTAAAATAATATTGAAAAAGCTCTCTCAGC
Found at i:4339714 original size:11 final size:11
Alignment explanation
Indices: 4339700--4339724 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4339690 TTTATTATAA
4339700 TTTTATTTATT
1 TTTTATTTATT
4339711 TTTTATTTATT
1 TTTTATTTATT
4339722 TTT
1 TTT
4339725 ATCCAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:4340392 original size:11 final size:11
Alignment explanation
Indices: 4340378--4340409 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
4340368 CTTTTCCTAC
4340378 ATTTTTTATTA
1 ATTTTTTATTA
4340389 ATTTTTTATT-
1 ATTTTTTATTA
4340399 A-TTTTTATTA
1 ATTTTTTATTA
4340409 A
1 A
4340410 ATTAAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 8 0.40
10 2 0.10
11 10 0.50
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTTTTTATTA
Found at i:4340685 original size:22 final size:23
Alignment explanation
Indices: 4340659--4340701 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
4340649 GGTCAACGCG
*
4340659 TGGTTCGGTC-CGGTGGTTCAGA
1 TGGTTCGGTCTCAGTGGTTCAGA
*
4340681 TGGTTTGGTCTCAGTGGTTCA
1 TGGTTCGGTCTCAGTGGTTCA
4340702 AGGTGGTCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.09, C:0.16, G:0.37, T:0.37
Consensus pattern (23 bp):
TGGTTCGGTCTCAGTGGTTCAGA
Found at i:4340862 original size:26 final size:26
Alignment explanation
Indices: 4340827--4340894 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
4340817 CTCAAGGTTC
4340827 AAAACGACGTCGTTTTTGGCATTATA
1 AAAACGACGTCGTTTTTGGCATTATA
*
4340853 AAAATGACGTCGTTTTTGGCATTATA
1 AAAACGACGTCGTTTTTGGCATTATA
* *
4340879 GAAACAACGTCGTTTT
1 AAAACGACGTCGTTTT
4340895 GGGTTTAGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (26 bp):
AAAACGACGTCGTTTTTGGCATTATA
Found at i:4341455 original size:23 final size:23
Alignment explanation
Indices: 4341411--4341457 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
4341401 TAGAGCTTTC
*
4341411 TAAGATTCAAATCTTAGATTTTT
1 TAAGATTCAAATCTCAGATTTTT
4341434 TAAGATTCAAATCTC--ATTTTT
1 TAAGATTCAAATCTCAGATTTTT
4341455 TAA
1 TAA
4341458 ACCTAAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.39
23 14 0.61
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (23 bp):
TAAGATTCAAATCTCAGATTTTT
Found at i:4341559 original size:16 final size:16
Alignment explanation
Indices: 4341538--4341569 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4341528 TGAATCAGAT
4341538 AAGAAAGAAGAAGAAG
1 AAGAAAGAAGAAGAAG
4341554 AAGAAAGAAGAAGAAG
1 AAGAAAGAAGAAGAAG
4341570 GAAAAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAGAAGAAG
Found at i:4341561 original size:13 final size:13
Alignment explanation
Indices: 4341545--4341569 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4341535 GATAAGAAAG
4341545 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
4341558 AAGAAGAAGAAG
1 AAGAAGAAGAAG
4341570 GAAAAAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAGA
Found at i:4341579 original size:19 final size:19
Alignment explanation
Indices: 4341542--4341600 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
4341532 TCAGATAAGA
*
4341542 AAGAAGAA-GAAGAAGAAAG
1 AAGAAGAAGGAA-AAAAAAG
4341561 AAGAAGAAGGAAAAAAAAG
1 AAGAAGAAGGAAAAAAAAG
*
4341580 AA-AAAAAGGAAAAAAATAG
1 AAGAAGAAGGAAAAAAA-AG
4341599 AA
1 AA
4341601 AAATAGAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.36
19 20 0.56
20 3 0.08
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (19 bp):
AAGAAGAAGGAAAAAAAAG
Found at i:4341629 original size:3 final size:3
Alignment explanation
Indices: 4341621--4341649 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
4341611 AAAAATAACA
4341621 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4341650 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4342778 original size:14 final size:14
Alignment explanation
Indices: 4342704--4342780 Score: 50
Period size: 14 Copynumber: 5.1 Consensus size: 14
4342694 TAATTAAGGG
*
4342704 TTTTAATTA-ATTAA
1 TTTTTATTATATT-A
4342718 TTTTTATTATGATTAA
1 TTTTTATTAT-ATT-A
*
4342734 TTTTTATTGT-TTA
1 TTTTTATTATATTA
*
4342747 TTGTTTATTTTTTAATTA
1 TT-TTTA--TTAT-ATTA
4342765 TTTTTATTATATTA
1 TTTTTATTATATTA
4342779 TT
1 TT
4342781 AAAAATTTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
13 3 0.06
14 20 0.38
15 3 0.06
16 17 0.33
17 4 0.08
18 5 0.10
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (14 bp):
TTTTTATTATATTA
Found at i:4342927 original size:7 final size:6
Alignment explanation
Indices: 4342907--4342938 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
4342897 AAAATATCAG
4342907 TTATTAT TTATTT TTATTT TTATTT TTATTT T
1 TTATT-T TTATTT TTATTT TTATTT TTATTT T
4342939 ACATTGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:4343450 original size:15 final size:15
Alignment explanation
Indices: 4343417--4343463 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
4343407 CATAAAAAAT
4343417 AAAAGAAAAAA-AATGA
1 AAAAGAAAAAAGAA--A
4343433 AAAAGAAAAAAGAAA
1 AAAAGAAAAAAGAAA
4343448 AAAATG-AAAAAGAAA
1 AAAA-GAAAAAAGAAA
4343463 A
1 A
4343464 GGGAAAACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 15 0.52
16 12 0.41
17 2 0.07
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (15 bp):
AAAAGAAAAAAGAAA
Found at i:4343451 original size:16 final size:16
Alignment explanation
Indices: 4343412--4343463 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
4343402 AATAACATAA
4343412 AAAATAAAAGAAAAAA-
1 AAAA-AAAAGAAAAAAG
*
4343428 AATGAAAAAGAAAAAAG
1 AA-AAAAAAGAAAAAAG
*
4343445 AAAAAAATG-AAAAAG
1 AAAAAAAAGAAAAAAG
4343460 AAAA
1 AAAA
4343464 GGGAAAACCT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 10 0.32
16 18 0.58
17 3 0.10
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAAAAAAGAAAAAAG
Found at i:4343470 original size:22 final size:22
Alignment explanation
Indices: 4343417--4343463 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
4343407 CATAAAAAAT
4343417 AAAAGAAAAAAAATGAAAAAGAA
1 AAAAG-AAAAAAATGAAAAAGAA
4343440 AAAAGAAAAAAATGAAAAAGAA
1 AAAAGAAAAAAATGAAAAAGAA
4343462 AA
1 AA
4343464 GGGAAAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (22 bp):
AAAAGAAAAAAATGAAAAAGAA
Found at i:4346135 original size:37 final size:37
Alignment explanation
Indices: 4346089--4346163 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
4346079 TATTCTTATT
*
4346089 TAATAAATAGTTATTTAACCATTAACAATTTAGTCAA
1 TAATAAATAGTTATTTAACCAATAACAATTTAGTCAA
4346126 TAATAAATAGTTATTTAACCAATAACAATTTAGTCAA
1 TAATAAATAGTTATTTAACCAATAACAATTTAGTCAA
4346163 T
1 T
4346164 CTTTACAGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (37 bp):
TAATAAATAGTTATTTAACCAATAACAATTTAGTCAA
Found at i:4347115 original size:2 final size:2
Alignment explanation
Indices: 4347103--4347147 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
4347093 TACCTCATGT
* * * *
4347103 TA TA AA TA TA TA TA TA TA TG TA TA TA TA TA TG TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4347145 TA T
1 TA T
4347148 GACCATTTAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4347126 original size:12 final size:12
Alignment explanation
Indices: 4347111--4347145 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
4347101 GTTATAAATA
4347111 TATATATATATG
1 TATATATATATG
4347123 TATATATATATG
1 TATATATATATG
*
4347135 TACATATATAT
1 TATATATATAT
4347146 ATGACCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (12 bp):
TATATATATATG
Found at i:4348744 original size:19 final size:20
Alignment explanation
Indices: 4348705--4348749 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4348695 CAATGGCTAG
*
4348705 AAAATTCAAATGGTTATTAA
1 AAAATTCAAATGATTATTAA
*
4348725 AAAATTCAACTGATTA-TAA
1 AAAATTCAAATGATTATTAA
4348744 AAAATT
1 AAAATT
4348750 TTAAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (20 bp):
AAAATTCAAATGATTATTAA
Found at i:4350483 original size:21 final size:21
Alignment explanation
Indices: 4350441--4350493 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
4350431 ATTTTACTTA
*
4350441 TTATTTTATCATTTTAATTTT
1 TTATTTTATCATTTGAATTTT
*
4350462 TTATCTTTATTATTTGAATTTTT
1 TTAT-TTTATCATTTGAA-TTTT
4350485 ATTATTTTA
1 -TTATTTTA
4350494 ATATTGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 4 0.15
22 11 0.41
23 8 0.30
24 4 0.15
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.70
Consensus pattern (21 bp):
TTATTTTATCATTTGAATTTT
Found at i:4350507 original size:23 final size:23
Alignment explanation
Indices: 4350456--4350507 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
4350446 TTATCATTTT
*
4350456 AATTTTTTATCTTTATTATTTGA
1 AATTTTTTATCTTTAATATTTGA
*
4350479 ATTTTTATTAT-TTTAATA-TTGA
1 AATTTT-TTATCTTTAATATTTGA
*
4350501 AAATTTT
1 AATTTTT
4350508 CTAAGTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 1 0.04
22 8 0.33
23 11 0.46
24 4 0.17
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (23 bp):
AATTTTTTATCTTTAATATTTGA
Found at i:4351121 original size:132 final size:124
Alignment explanation
Indices: 4350906--4351277 Score: 402
Period size: 132 Copynumber: 3.0 Consensus size: 124
4350896 TTTTATTATT
* * * * * *
4350906 TTATTTATTATTTTGTGTTTGAAAAATT-TTAAATATTTCTAACA-TTTTAAAAATACTTTAGCA
1 TTATTTATTTTTTTATGTTTGAAAAATTCTAAAATATTTCTAACACTTTT-AGAATATTTTAGAA
* *
4350969 AATTTCTTTATATAAATATTTTCGATAAAATCACCAGTTGTGACTTTATTCTTTATTAATAAC
65 AATTTCTTTATATAAATATTTTCAATAAAATCACCACTTGTGA-TTT-TT-TTTATTAATAAC
* *
4351032 ATTTGTTATTTATTTTTTTATGCTTGCAAAAATTCTAAAATATTTCTAATACTTTTAGAATATTT
1 -----TTATTTATTTTTTTATGTTTG-AAAAATTCTAAAATATTTCTAACACTTTTAGAATATTT
*
4351097 TA-AAAATTTCTTTGTATAAATATTTTCAATAAAATCACCACTTGTGATTTTTTTTATTAATAAC
60 TAGAAAATTTCTTTATATAAATATTTTCAATAAAATCACCACTTGTGATTTTTTTTATTAATAAC
*
4351161 -----T-TTTTTTTATGTTTGAAAATAATTCTAAATTATTTCTAACACTTTTAGAATATTTTAGA
1 TTATTTATTTTTTTATGTTTG-AAA-AATTCTAAAATATTTCTAACACTTTTAGAATATTTTAGA
* * **
4351220 AAATTTCTTTATGTAAATTTTTTTCAATAAAATCATAACTTGTGATCTTATTTTTATT
64 AAATTTCTTTATATAAA-TATTTTCAATAAAATCACCACTTGTGAT-TT-TTTTTATT
4351278 TCATCATAGT
Statistics
Matches: 213, Mismatches: 20, Indels: 24
0.83 0.08 0.09
Matches are distributed among these distances:
118 16 0.08
119 36 0.17
120 16 0.08
121 25 0.12
122 2 0.01
123 8 0.04
129 12 0.06
130 2 0.01
131 21 0.10
132 48 0.23
133 23 0.11
134 4 0.02
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.51
Consensus pattern (124 bp):
TTATTTATTTTTTTATGTTTGAAAAATTCTAAAATATTTCTAACACTTTTAGAATATTTTAGAAA
ATTTCTTTATATAAATATTTTCAATAAAATCACCACTTGTGATTTTTTTTATTAATAAC
Found at i:4351185 original size:119 final size:122
Alignment explanation
Indices: 4351044--4351277 Score: 350
Period size: 119 Copynumber: 1.9 Consensus size: 122
4351034 TTGTTATTTA
* *
4351044 TTTTTTTATGCTTGCAAAAATTCTAAAATATTTCTAATACTTTTAGAATATTTTA-AAAATTTCT
1 TTTTTTTATGCTTGAAAAAATTCTAAAATATTTCTAACACTTTTAGAATATTTTAGAAAATTTCT
* *
4351108 TTGTATAAA-TATTTTCAATAAAATCACCACTTGTGAT-TT-TTTTTATTAATAACT
66 TTATATAAATTATTTTCAATAAAATCACAACTTGTGATCTTATTTTTATTAATAACT
* *
4351162 TTTTTTTATGTTTGAAAATAATTCTAAATTATTTCTAACACTTTTAGAATATTTTAGAAAATTTC
1 TTTTTTTATGCTTGAAAA-AATTCTAAAATATTTCTAACACTTTTAGAATATTTTAGAAAATTTC
* * *
4351227 TTTATGTAAATTTTTTTCAATAAAATCATAACTTGTGATCTTATTTTTATT
65 TTTATATAAATTATTTTCAATAAAATCACAACTTGTGATCTTATTTTTATT
4351278 TCATCATAGT
Statistics
Matches: 102, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
118 16 0.16
119 35 0.34
120 16 0.16
121 25 0.25
122 2 0.02
123 8 0.08
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.51
Consensus pattern (122 bp):
TTTTTTTATGCTTGAAAAAATTCTAAAATATTTCTAACACTTTTAGAATATTTTAGAAAATTTCT
TTATATAAATTATTTTCAATAAAATCACAACTTGTGATCTTATTTTTATTAATAACT
Found at i:4351454 original size:10 final size:9
Alignment explanation
Indices: 4351404--4351458 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
4351394 AAAAATACTA
*
4351404 AAAAAATAC
1 AAAAAATAG
4351413 AAAAAATAG
1 AAAAAATAG
*
4351422 AATAAATAG
1 AAAAAATAG
* *
4351431 AATAAATGAT
1 AAAAAAT-AG
4351441 AAAAAATAAG
1 AAAAAAT-AG
4351451 AAAAAATA
1 AAAAAATA
4351459 TTAAAATACC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
9 24 0.62
10 15 0.38
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (9 bp):
AAAAAATAG
Found at i:4351463 original size:20 final size:19
Alignment explanation
Indices: 4351394--4351464 Score: 56
Period size: 20 Copynumber: 3.6 Consensus size: 19
4351384 ATGGTAAATT
*
4351394 AAAAATACTAAAAAA-ATACA
1 AAAAATA-TAAAAAATA-AGA
* *
4351414 AAAAATAGAATAAAT-AGA
1 AAAAATATAAAAAATAAGA
*
4351432 ATAAATGATAAAAAATAAGA
1 AAAAAT-ATAAAAAATAAGA
4351452 AAAAATATTAAAA
1 AAAAATA-TAAAA
4351465 TACCAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
18 7 0.17
19 13 0.32
20 20 0.50
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (19 bp):
AAAAATATAAAAAATAAGA
Found at i:4352838 original size:44 final size:43
Alignment explanation
Indices: 4352765--4352929 Score: 181
Period size: 43 Copynumber: 3.8 Consensus size: 43
4352755 AAAGTTTATT
* * * *
4352765 TAAGTAAAGGCTCGATGAC-TTTGTAAATTTTAAAAAACTTCTC
1 TAAGTAAAAGCTCAATGACTTTTG-AAAATTTAAAAAGCTTCTC
* * *
4352808 TAAGCAAAAGCTCAATGACTTTTGAAAATTTAAAAGGCTTTTC
1 TAAGTAAAAGCTCAATGACTTTTGAAAATTTAAAAAGCTTCTC
*
4352851 TAAGTAAAAGCTCAATGACTTTTTAAAAATTTAAAAAGC-TCTTC
1 TAAGTAAAAGCTCAATGAC-TTTTGAAAATTTAAAAAGCTTC-TC
* * * *
4352895 TAAGTAAAGGTTCCATAACTTTTGAAAATTTAAAA
1 TAAGTAAAAGCTCAATGACTTTTGAAAATTTAAAA
4352930 TATTCTACCT
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
43 65 0.63
44 38 0.37
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (43 bp):
TAAGTAAAAGCTCAATGACTTTTGAAAATTTAAAAAGCTTCTC
Found at i:4352918 original size:87 final size:86
Alignment explanation
Indices: 4352765--4352929 Score: 215
Period size: 87 Copynumber: 1.9 Consensus size: 86
4352755 AAAGTTTATT
* * * *
4352765 TAAGTAAAGGCTCGATGACTTTGTAAATTTTAAAAAACTTCTCTAAGCAAAAGCTCAATGACTTT
1 TAAGTAAAAGCTCAATGACTTTGTAAAATTTAAAAAACTTCTCTAAGCAAAAGCTCAATAACTTT
4352830 TGAAAATTTAAAAGGCTTTTC
66 TGAAAATTTAAAAGGCTTTTC
* * * * * *
4352851 TAAGTAAAAGCTCAATGACTTTTTAAAAATTTAAAAAGC-TCTTCTAAGTAAAGGTTCCATAACT
1 TAAGTAAAAGCTCAATGACTTTGT-AAAATTTAAAAAACTTC-TCTAAGCAAAAGCTCAATAACT
4352915 TTTGAAAATTTAAAA
64 TTTGAAAATTTAAAA
4352930 TATTCTACCT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
86 23 0.34
87 44 0.66
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (86 bp):
TAAGTAAAAGCTCAATGACTTTGTAAAATTTAAAAAACTTCTCTAAGCAAAAGCTCAATAACTTT
TGAAAATTTAAAAGGCTTTTC
Found at i:4353080 original size:114 final size:113
Alignment explanation
Indices: 4352875--4353120 Score: 316
Period size: 114 Copynumber: 2.2 Consensus size: 113
4352865 ATGACTTTTT
* *
4352875 AAAAATTTAAAAAGCTCT-TCTAAGTAAAGGTTCCATAACTTTTGAAAATTTAAAATATTCTACC
1 AAAAATTTAAAAAGCT-TATCTAAGTAAAGGTTCCACAACTTTTAAAAATTTAAAATATTCTACC
* * * * * *
4352939 TAAAGGACTTATGAATCTTGATAATGAAAGCTTCTTTAAACAGAGGTTC
65 CAAAGGACTTATCAATCTTAATAATGAAAGCTCCTTTAAACAAAGGCTC
* *
4352988 AAAAACTTTAAAACGCTTATCTAAGTAGAGGTTCCACAACTTTTAAAAATTTAAAATATTCTACC
1 AAAAA-TTTAAAAAGCTTATCTAAGTAAAGGTTCCACAACTTTTAAAAATTTAAAATATTCTACC
* * *
4353053 CGAAGGATTTA-CAAGTCTTAATAATGAAAGCTCCTTTAAGCAAAGGCTC
65 CAAAGGACTTATCAA-TCTTAATAATGAAAGCTCCTTTAAACAAAGGCTC
*
4353102 AATAATTTTAAAAAGCTTA
1 AA-AAATTTAAAAAGCTTA
4353121 AAAGGCTCCT
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
113 8 0.07
114 104 0.91
115 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (113 bp):
AAAAATTTAAAAAGCTTATCTAAGTAAAGGTTCCACAACTTTTAAAAATTTAAAATATTCTACCC
AAAGGACTTATCAATCTTAATAATGAAAGCTCCTTTAAACAAAGGCTC
Found at i:4353160 original size:16 final size:16
Alignment explanation
Indices: 4353141--4353173 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4353131 CTAAGCAAAA
4353141 GCTCATCTAAGTAGAG
1 GCTCATCTAAGTAGAG
*
4353157 GCTCCTCTAAGTAGAG
1 GCTCATCTAAGTAGAG
4353173 G
1 G
4353174 TTCCACAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (16 bp):
GCTCATCTAAGTAGAG
Found at i:4361614 original size:132 final size:130
Alignment explanation
Indices: 4361414--4361672 Score: 358
Period size: 132 Copynumber: 2.0 Consensus size: 130
4361404 TATTTTATTA
* ** *
4361414 TTTTATTTATTATTTTGTGTTTTAAAAATTCTAAATATTTCTAACATTTTTAGAATACTTTACAA
1 TTTTATTTATTATTTTATGTTGCAAAAATTCTAAATATTTCTAACACTTTTAGAATACTTTACAA
* * * *
4361479 AATTTCTTTATATGAATATTTTCAATAAAATCACTACTTGTGACTTTATTCTTTATTAATAAATT
66 AATTTCTTTATATAAATATTTTAAATAAAACCACCACTTGTGACTTTATTCTTTATTAATAAATT
* * *
4361544 TTTTATTTATTTTTTTATGCTTGCAAAAATTCTAAAATATTTCTAATACTTTTAGAATATTTTGA
1 TTTTATTTATTATTTTATG-TTGCAAAAATTCT-AAATATTTCTAACACTTTTAGAATACTTT-A
* * *
4361609 -AAAATTTCTTTGTATAAATATTTTAAATAAAACCACCACTTGTGATTTTATTTTTTATTAATAA
63 CAAAATTTCTTTATATAAATATTTTAAATAAAACCACCACTTGTGACTTTATTCTTTATTAATAA
4361673 TGTTTCTTTT
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
130 17 0.15
131 11 0.10
132 83 0.74
133 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (130 bp):
TTTTATTTATTATTTTATGTTGCAAAAATTCTAAATATTTCTAACACTTTTAGAATACTTTACAA
AATTTCTTTATATAAATATTTTAAATAAAACCACCACTTGTGACTTTATTCTTTATTAATAAATT
Found at i:4361705 original size:132 final size:131
Alignment explanation
Indices: 4361433--4361790 Score: 326
Period size: 132 Copynumber: 2.8 Consensus size: 131
4361423 TTATTTTGTG
* *
4361433 TTTTAAAAATTCTAAATATTTCTAACATTTTTAGAATACTTTACAAAATTTCTTTATATGAATAT
1 TTTTAAAAATTCTAAATATTTCTAACACTTTTAGAATACTTTACAAAATTTCTTTATATAAATAT
* * * * ***
4361498 TTTCAATAAAATCACTACTTGTGACTTTATTCTTTATTAATAAATTTTTTATTTATTTTTTTATG
66 TTTAAATAAAACCACCACTTGTGACTTTATTCTTTATTAATAAATTTTCTATTTATTTTGAAATG
4361563 C
131 C
** * * *
4361564 TTGCAAAAATTCTAAAATATTTCTAATACTTTTAGAATATTTTGA-AAAATTTCTTTGTATAAAT
1 TTTTAAAAATTCT-AAATATTTCTAACACTTTTAGAATACTTT-ACAAAATTTCTTTATATAAAT
* *
4361628 ATTTTAAATAAAACCACCACTTGTGATTTTATTTTTTATTAAT-AATGTTTCT-TTTATGTTTGA
64 ATTTTAAATAAAACCACCACTTGTGACTTTATTCTTTATTAATAAAT-TTTCTATTTAT-TTTGA
4361691 AAT--
127 AATGC
* * **** * *
4361694 TTTT-----TT-TAAAATATTTCTAACACTTTTAGAATATTTTAAAAAAAAAATTTATGTAAATT
1 TTTTAAAAATTCT-AAATATTTCTAACACTTTTAGAATACTTTACAAAATTTCTTTATATAAATA
* * * * *
4361753 TTTTTAATACAATCATCACTTGTGATTTTATT-TTTATT
65 TTTTAAATAAAACCACCACTTGTGACTTTATTCTTTATT
4361791 TTATCATATT
Statistics
Matches: 192, Mismatches: 30, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
123 7 0.04
124 71 0.37
125 2 0.01
130 2 0.01
131 19 0.10
132 90 0.47
133 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.51
Consensus pattern (131 bp):
TTTTAAAAATTCTAAATATTTCTAACACTTTTAGAATACTTTACAAAATTTCTTTATATAAATAT
TTTAAATAAAACCACCACTTGTGACTTTATTCTTTATTAATAAATTTTCTATTTATTTTGAAATG
C
Found at i:4361811 original size:25 final size:24
Alignment explanation
Indices: 4361779--4361828 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
4361769 CACTTGTGAT
*
4361779 TTTATTTTT-ATTTTATCATATTTTA
1 TTTATTTTTCATTAT-TCAT-TTTTA
4361804 TTTATTTTTCATTATTCATTTTTA
1 TTTATTTTTCATTATTCATTTTTA
4361828 T
1 T
4361829 ACTAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 6 0.26
25 13 0.57
26 4 0.17
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTATTTTTCATTATTCATTTTTA
Found at i:4361939 original size:14 final size:12
Alignment explanation
Indices: 4361906--4361956 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 12
4361896 TAGAAATACT
4361906 AAAAAAATAGAA-
1 AAAAAAATA-AAG
4361918 AAATAAAATAAATG
1 AAA-AAAATAAA-G
4361932 ATAAAAAATAAGAG
1 A-AAAAAATAA-AG
4361946 AAAAAAATAAA
1 AAAAAAATAAA
4361957 AATATCAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
12 6 0.18
13 15 0.44
14 10 0.29
15 3 0.09
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (12 bp):
AAAAAAATAAAG
Found at i:4363203 original size:20 final size:21
Alignment explanation
Indices: 4363167--4363206 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
4363157 GTAGAAACCT
4363167 AATTGGGTCCGGGCCCAAATC
1 AATTGGGTCCGGGCCCAAATC
*
4363188 AATTGGG-CCTGGCCCAAAT
1 AATTGGGTCCGGGCCCAAAT
4363207 GGGTAAGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (21 bp):
AATTGGGTCCGGGCCCAAATC
Found at i:4363272 original size:9 final size:10
Alignment explanation
Indices: 4363260--4363300 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
4363250 TTTCTTCTTT
4363260 TGTATT-TTA
1 TGTATTATTA
4363269 TGTATT-TTA
1 TGTATTATTA
4363278 T-TATTATTA
1 TGTATTATTA
4363287 T-TATTATTA
1 TGTATTATTA
4363296 TGTAT
1 TGTAT
4363301 ATCTTTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 4 0.13
9 23 0.77
10 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (10 bp):
TGTATTATTA
Found at i:4365700 original size:59 final size:56
Alignment explanation
Indices: 4365621--4365950 Score: 410
Period size: 59 Copynumber: 5.7 Consensus size: 56
4365611 AATTTCAAAA
* * ***
4365621 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGTGAATCAAAATTTTC
1 AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC
* *
4365680 GAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
4365737 -AAAAATGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAATGTTTC
1 AAAAAAT--ATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAT-TTTC
*
4365796 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 -AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
4365854 AAAAAAAATATTTTCGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 --AAAAAATATTTT-TGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
4365913 AAAAAATATTTTCGGGGAAAAGTTGAAAGTATCAATTT
1 AAAAAATATTTT-TGGGAAAAGTTGAAAGTATCAATTT
4365951 CCCTACGCAA
Statistics
Matches: 246, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
56 6 0.02
57 46 0.19
58 46 0.19
59 140 0.57
60 2 0.01
61 6 0.02
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (56 bp):
AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:4365756 original size:117 final size:114
Alignment explanation
Indices: 4365621--4365950 Score: 457
Period size: 117 Copynumber: 2.8 Consensus size: 114
4365611 AATTTCAAAA
* ** *
4365621 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGTGAATCAAAATTTTCGAAAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAATTTTCAAAAAA
*
4365686 TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
65 TATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
4365737 AAAAATGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AATGTTTCAAAAA
1 AAAAA-AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAT-TTTC-AAAA
*
4365801 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
63 AATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
4365854 AAAAAAAATATTTTCGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAA
1 AAAAAAGAT-TTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTTCAAAAA
*
4365918 ATATTTTCGGGGAAAAGTTGAAAGTATCAATTT
64 ATATTTT-TGGGAAAAGTTGAAAGTATCAATTT
4365951 CCCTACGCAA
Statistics
Matches: 192, Mismatches: 14, Indels: 16
0.86 0.06 0.07
Matches are distributed among these distances:
115 3 0.02
116 47 0.24
117 106 0.55
118 36 0.19
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (114 bp):
AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTTCAAAAAAT
ATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:4365914 original size:176 final size:174
Alignment explanation
Indices: 4365620--4365950 Score: 504
Period size: 176 Copynumber: 1.9 Consensus size: 174
4365610 AAATTTCAAA
*** *
4365620 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGTGAATCAAAATTTTCGAAAA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTTCAAAAA
* *
4365685 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC-AAAAATGGATTT
65 ATATTTTCAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAT--ATTT
*
4365749 TTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAATGTTTC
128 TCAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAATGTTTC
*
4365796 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTTTCAAAAAA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTC--AAAA
*
4365860 AATATTTTCGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAATATTTT
64 AATATTTTCAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAATATTTT
**
4365925 CGGGGAAAAGTTGAAAGTATCAATTT
129 CAAGGAAAAGTTGAAAGTATCAATTT
4365951 CCCTACGCAA
Statistics
Matches: 141, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
174 8 0.06
175 28 0.20
176 99 0.70
177 6 0.04
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (174 bp):
AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAA
TATTTTCAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAATATTTTCA
AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAATGTTTC
Found at i:4368817 original size:14 final size:15
Alignment explanation
Indices: 4368770--4368814 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
4368760 AGCCCAAAAT
* *
4368770 ATTTTTTCATTTTCA
1 ATTTTTTTAATTTCA
**
4368785 ATTTTTTTTGTTTCA
1 ATTTTTTTAATTTCA
4368800 ATTTTTTTAATTTCA
1 ATTTTTTTAATTTCA
4368815 TTTATTTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.69
Consensus pattern (15 bp):
ATTTTTTTAATTTCA
Found at i:4369709 original size:14 final size:14
Alignment explanation
Indices: 4369686--4369736 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
4369676 TAGCTTTTTG
*
4369686 GCTTAGGGTTTAGA
1 GCTTAAGGTTTAGA
4369700 GCTTAAGGTTT-G-
1 GCTTAAGGTTTAGA
* *
4369712 GTTTAGGGTTTAGA
1 GCTTAAGGTTTAGA
4369726 GCTTAAGGTTT
1 GCTTAAGGTTT
4369737 GGTTTAGGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
12 9 0.30
13 2 0.07
14 19 0.63
ACGTcount: A:0.20, C:0.06, G:0.33, T:0.41
Consensus pattern (14 bp):
GCTTAAGGTTTAGA
Found at i:4369711 original size:26 final size:26
Alignment explanation
Indices: 4369682--4369746 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
4369672 GAGTTAGCTT
*
4369682 TTTGGCTTAGGGTTTAGAGCTTAAGG
1 TTTGGTTTAGGGTTTAGAGCTTAAGG
4369708 TTTGGTTTAGGGTTTAGAGCTTAAGG
1 TTTGGTTTAGGGTTTAGAGCTTAAGG
4369734 TTTGGTTTAGGGT
1 TTTGGTTTAGGGT
4369747 CTAAGGTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.17, C:0.05, G:0.35, T:0.43
Consensus pattern (26 bp):
TTTGGTTTAGGGTTTAGAGCTTAAGG
Found at i:4371834 original size:65 final size:65
Alignment explanation
Indices: 4371731--4371919 Score: 204
Period size: 65 Copynumber: 2.9 Consensus size: 65
4371721 TTTTTTGTCT
* *
4371731 AAAATGCCTTCAATAATCTCTTATAAAAAATTGAAAGGGATTACTAAAGGTATTTTTTTTGCA-A
1 AAAATGCCTTCAATAATTTCTTATAAAAAATTGAAAGGGATTACTAAAGGCATTTTTTTTGCACA
* * * **
4371795 AAAATGCCTTCAATAATTTCTTCTAAAAAAATTGAAAGGGATTATTGAAGGCATTTTTTTTTTAT
1 AAAATGCCTTCAATAATTTCTTAT-AAAAAATTGAAAGGGATTACTAAAGGCATTTTTTTTGCA-
4371860 CA
64 CA
* * * * * *
4371862 AAAACGCCTTCAATAATTTTCTCATATAAAA-TG-AAGGGTAGTATTAAAAGCATTTTTT
1 AAAATGCCTTCAATAA-TTTCTTATAAAAAATTGAAAGGG-ATTACTAAAGGCATTTTTT
4371920 ATAAAAAAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
64 22 0.21
65 39 0.37
66 18 0.17
67 21 0.20
68 6 0.06
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (65 bp):
AAAATGCCTTCAATAATTTCTTATAAAAAATTGAAAGGGATTACTAAAGGCATTTTTTTTGCACA
Found at i:4371917 original size:131 final size:132
Alignment explanation
Indices: 4371719--4372008 Score: 283
Period size: 132 Copynumber: 2.2 Consensus size: 132
4371709 TATTCAATGC
* * * * * * *
4371719 TTTTTTTTGTCTAAAATGCCTTCAATAATCTCTTATAAAAAATTGAAAGGGATTACTAAAGGTAT
1 TTTTTTTTATCAAAAACGCCTTCAATAATCTCTCATAAAAAATTGAAAGGGAGTACTAAAAGCAT
*** ** * * *
4371784 TTTTT-T-TGCAAAAAATGCCT-TCAATAATTTCTTCTAAAAAAATTGAAAGGGATTATTGAAGG
66 TTTTTATAAAAAAAAAACACCTGT-AATAATCTCTT-TAAAAAAATTGAAAAGGATTATTGAAGA
4371846 CATT
129 CATT
* * *
4371850 TTTTTTTTATCAAAAACGCCTTCAATAATTTTCTCATATAAAA-TG-AAGGGTAGTATTAAAAGC
1 TTTTTTTTATCAAAAACGCCTTCAATAA-TCTCTCATAAAAAATTGAAAGGG-AGTACTAAAAGC
* *
4371913 ATTTTTTATAAAAAAAAAACACCTGTAATACTCTCTTTAAAAAATTTGAAAAGGATTATTGAAGA
64 ATTTTTTATAAAAAAAAAACACCTGTAATAATCTCTTTAAAAAAATTGAAAAGGATTATTGAAGA
*
4371978 CGTT
129 CATT
*
4371982 TTTTTTTT-T---AAATGCCTTCAATAATCT
1 TTTTTTTTATCAAAAACGCCTTCAATAATCT
4372009 TCTTTGCAAA
Statistics
Matches: 131, Mismatches: 23, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
127 2 0.02
128 14 0.11
130 5 0.04
131 43 0.33
132 48 0.37
133 18 0.14
134 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.39
Consensus pattern (132 bp):
TTTTTTTTATCAAAAACGCCTTCAATAATCTCTCATAAAAAATTGAAAGGGAGTACTAAAAGCAT
TTTTTATAAAAAAAAAACACCTGTAATAATCTCTTTAAAAAAATTGAAAAGGATTATTGAAGACA
TT
Found at i:4375068 original size:16 final size:16
Alignment explanation
Indices: 4375047--4375077 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4375037 ATTAATTGAT
4375047 AAAATTTATAAATTTG
1 AAAATTTATAAATTTG
*
4375063 AAAATTTATATATTT
1 AAAATTTATAAATTT
4375078 TGGTGGTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
AAAATTTATAAATTTG
Found at i:4379265 original size:17 final size:17
Alignment explanation
Indices: 4379246--4379278 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
4379236 ATTAATCGAA
4379246 AAAATTTATA-ATTTTG
1 AAAATTTATATATTTTG
4379262 AAAATTTATATATTTTG
1 AAAATTTATATATTTTG
4379279 GTAGTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (17 bp):
AAAATTTATATATTTTG
Found at i:4379506 original size:15 final size:15
Alignment explanation
Indices: 4379483--4379517 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
4379473 AGTTCTTGTT
4379483 TAATATTAATAATAA
1 TAATATTAATAATAA
*
4379498 TAATTTTAATAATAA
1 TAATATTAATAATAA
*
4379513 CAATA
1 TAATA
4379518 ATATTGGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATATTAATAATAA
Found at i:4382003 original size:59 final size:59
Alignment explanation
Indices: 4381890--4382042 Score: 150
Period size: 62 Copynumber: 2.5 Consensus size: 59
4381880 AGGTATTTTT
* * * *
4381890 TTTTTAGG-AAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTC-CAAAAAATA
1 TTTTT-GGAAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAAGTTTCAAAAAAAAAA
* * *
4381948 TTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTTTCAAAAAAAAAAAAA
1 TTTTT-GGAAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAAGTTTC---AAAAAAAAAA
* *
4382010 TTTTTGAAGAAAAGTTGAAAGTATCTATTTTCC
1 TTTTTGGA-AAAAGTTGAAAGTATCAATTTTCC
4382043 CTGCACAAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
58 14 0.18
59 28 0.36
61 2 0.03
62 34 0.44
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (59 bp):
TTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAAGTTTCAAAAAAAAAA
Found at i:4383573 original size:21 final size:22
Alignment explanation
Indices: 4383541--4383596 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
4383531 TAATGACAAT
* *
4383541 AAATAAATAAAATAG-TAATAA
1 AAATAAAAAAAATAGTTAAAAA
* *
4383562 AAATGATAAAAAT-GTTAAAAA
1 AAATAAAAAAAATAGTTAAAAA
4383583 AAATAAAAAAAATA
1 AAATAAAAAAAATA
4383597 AAAAATGATT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.21
Consensus pattern (22 bp):
AAATAAAAAAAATAGTTAAAAA
Found at i:4383590 original size:8 final size:9
Alignment explanation
Indices: 4383577--4383601 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4383567 ATAAAAATGT
4383577 TAAAAAAAA
1 TAAAAAAAA
4383586 TAAAAAAAA
1 TAAAAAAAA
4383595 TAAAAAA
1 TAAAAAA
4383602 TGATTGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:4383702 original size:3 final size:3
Alignment explanation
Indices: 4383696--4383738 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
4383686 TTGAGGAATT
4383696 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
4383739 ATTTTCATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4383954 original size:29 final size:29
Alignment explanation
Indices: 4383890--4384230 Score: 261
Period size: 29 Copynumber: 11.7 Consensus size: 29
4383880 CCCTAAATTT
* * * *
4383890 CCTAAACCACTAAACCTTAAAAAC-AAAA
1 CCTAAACCTCCAAACCCTAAAAACTAAAC
* *
4383918 CTTCAAACCTCTAAACCCTAAAAACTAAAC
1 CCT-AAACCTCCAAACCCTAAAAACTAAAC
* * *
4383948 CCTAAACCTACCAAATCTTAAAATA-AAAAC
1 CCTAAACCT-CCAAACCCTAAAA-ACTAAAC
* *
4383978 CCCAAACCTTCAAACCCT-AAAACTAAA-
1 CCTAAACCTCCAAACCCTAAAAACTAAAC
* * *
4384005 CTTCAAACCTCCAAACCCT-AAAATTAGAC
1 CCT-AAACCTCCAAACCCTAAAAACTAAAC
* * *
4384034 CCTAAACTCTCCAAACCTTAAAATCAAAAC
1 CCTAAAC-CTCCAAACCCTAAAAACTAAAC
* *
4384064 CCCAAACCTCTAAACCCTAAAAACTAAAC
1 CCTAAACCTCCAAACCCTAAAAACTAAAC
* *
4384093 CCTAAATCCAT-CAAACCCTAAAATA-AAAAA
1 CCTAAA-CC-TCCAAACCCTAAAA-ACTAAAC
4384123 CCTAAACCTCCAAACCCT-AAAACTAAAC
1 CCTAAACCTCCAAACCCTAAAAACTAAAC
* * *
4384151 CCCAAACCTCTAAACCCT-AAAAGTGAAAC
1 CCTAAACCTCCAAACCCTAAAAACT-AAAC
* *
4384180 CCTAAACCTTCCAAACCCTAAAATCAAAATC
1 CCTAAACC-TCCAAACCCTAAAAACTAAA-C
* *
4384211 CCTAAA-ATCGAAACCCTAAA
1 CCTAAACCTCCAAACCCTAAA
4384231 CTTGTAAACC
Statistics
Matches: 249, Mismatches: 46, Indels: 35
0.75 0.14 0.11
Matches are distributed among these distances:
27 3 0.01
28 61 0.24
29 99 0.40
30 73 0.29
31 13 0.05
ACGTcount: A:0.49, C:0.33, G:0.01, T:0.17
Consensus pattern (29 bp):
CCTAAACCTCCAAACCCTAAAAACTAAAC
Done.