Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 40 of 121
Found at i:7028540 original size:35 final size:38
Alignment explanation
Indices: 7028501--7028581 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 38
7028491 TTTTTATTTG
*
7028501 TTAATTTCATT-TT-ATTTATTCAATAATAATA-TGAA
1 TTAATTTAATTATTAATTTATTCAATAATAATATTGAA
* * * *
7028536 TTAATCTAATTATTAAATTTATTCAATAGTATTATTTAA
1 TTAATTTAATTATT-AATTTATTCAATAATAATATTGAA
7028575 TTAATTT
1 TTAATTT
7028582 TTTAAGAAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
35 9 0.25
36 2 0.06
38 16 0.44
39 9 0.25
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (38 bp):
TTAATTTAATTATTAATTTATTCAATAATAATATTGAA
Found at i:7028739 original size:18 final size:18
Alignment explanation
Indices: 7028718--7028760 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7028708 TGTAACAATA
*
7028718 AATAATATTAATTTAATT
1 AATAATATTAAATTAATT
*
7028736 AATAATATTAAATTATTT
1 AATAATATTAAATTAATT
7028754 AATAATA
1 AATAATA
7028761 CTTGGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AATAATATTAAATTAATT
Found at i:7028842 original size:21 final size:21
Alignment explanation
Indices: 7028792--7028842 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
7028782 TATACTAAAT
*
7028792 AATAATATCATATTCATATAA
1 AATAATATTATATTCATATAA
*
7028813 AATAATATTATAATTTA-ATAA
1 AATAATATTAT-ATTCATATAA
7028834 AATAATATT
1 AATAATATT
7028843 TAGTTACCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (21 bp):
AATAATATTATATTCATATAA
Found at i:7032030 original size:37 final size:36
Alignment explanation
Indices: 7031951--7032032 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 36
7031941 GCAAGTATGA
*
7031951 ATAAAGTTTGTGAAGATTATTCTTTTGAATATTTGT
1 ATAAAGTTTGTGAAGATTATTCTTTTAAATATTTGT
*
7031987 AAAAAGTTTGTGAAGATTATATGC-TTTAAATATTTGT
1 ATAAAGTTTGTGAAGATTAT-T-CTTTTAAATATTTGT
7032024 ATAAAGTTT
1 ATAAAGTTT
7032033 CCAATAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
36 19 0.46
37 21 0.51
38 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.46
Consensus pattern (36 bp):
ATAAAGTTTGTGAAGATTATTCTTTTAAATATTTGT
Found at i:7034193 original size:9 final size:9
Alignment explanation
Indices: 7034179--7034204 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7034169 TTTCACACAA
7034179 ATAAATATT
1 ATAAATATT
7034188 ATAAATATT
1 ATAAATATT
7034197 ATAAATAT
1 ATAAATAT
7034205 AAGAAGGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
ATAAATATT
Found at i:7039855 original size:36 final size:36
Alignment explanation
Indices: 7039807--7039890 Score: 134
Period size: 36 Copynumber: 2.3 Consensus size: 36
7039797 ATCAAGTAGG
7039807 AATTTTTCATACCATCAAGATCATCAATCAAATAAA
1 AATTTTTCATACCATCAAGATCATCAATCAAATAAA
* *
7039843 AAGTTTTT-ATACCATCAAGATCATTAATCAAATAGA
1 AA-TTTTTCATACCATCAAGATCATCAATCAAATAAA
7039879 AATTTTTCATAC
1 AATTTTTCATAC
7039891 TGTTTTCTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 5 0.11
36 34 0.77
37 5 0.11
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.35
Consensus pattern (36 bp):
AATTTTTCATACCATCAAGATCATCAATCAAATAAA
Found at i:7040033 original size:19 final size:19
Alignment explanation
Indices: 7040009--7040045 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7039999 CAATCTTAAT
7040009 ATCAAGCAATATACCAATC
1 ATCAAGCAATATACCAATC
*
7040028 ATCAAGCAATATTCCAAT
1 ATCAAGCAATATACCAAT
7040046 TTTACAAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.24
Consensus pattern (19 bp):
ATCAAGCAATATACCAATC
Found at i:7049282 original size:113 final size:111
Alignment explanation
Indices: 7049081--7049383 Score: 284
Period size: 113 Copynumber: 2.7 Consensus size: 111
7049071 TAATAAAAAC
* * * *
7049081 TGCATTTTTTATCTTAAAAATATTATTTTTGTTGAATTTTAAAAATATTTTTTTCATATTTTCAA
1 TGCATTTTTTATCTTAAAAACATTATTTTTATTGAATTTTAAAAATATATTTTTAATATTTTCAA
* *
7049146 CAAAGAATGCGTTTTAATATTAGAAAAATGGTCTTTCAACAAAGAA
66 CAAAGAATACATTTTAATATTAGAAAAATGGTCTTTCAACAAAGAA
* *
7049192 TGCA-TTTTTATCTTAGAAGCATTATATTTTATTGAATTTTTAAAAAATATATTTTTAATATTTT
1 TGCATTTTTTATCTTAAAAACATTAT-TTTTATTGAA-TTTT-AAAAATATATTTTTAATATTTT
* * * * * ** ** * * *
7049256 CAATAAAGACTATATTTTTATCTTAGAAATGTCATTTTTTCAGCAAAGAC
63 CAACAAAGAATACATTTTAATATTAGAAAAAT-GGTCTTTCAACAAAGAA
* * * * * *
7049306 TGTATTTTTTTATCTTAAAAACATTATCTTTATTAAATTCTAAAAAATAATTTTTTTCATATTTT
1 TGCA-TTTTTTATCTTAAAAACATTATTTTTATTGAATT-TTAAAAAT-ATATTTTTAATATTTT
* *
7049371 CAGCAAAAAATAC
63 CAACAAAGAATAC
7049384 GTTGTTATCT
Statistics
Matches: 151, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
110 18 0.12
111 13 0.09
112 4 0.03
113 43 0.28
114 23 0.15
115 31 0.21
116 19 0.13
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.47
Consensus pattern (111 bp):
TGCATTTTTTATCTTAAAAACATTATTTTTATTGAATTTTAAAAATATATTTTTAATATTTTCAA
CAAAGAATACATTTTAATATTAGAAAAATGGTCTTTCAACAAAGAA
Found at i:7049542 original size:115 final size:115
Alignment explanation
Indices: 7049018--7049544 Score: 345
Period size: 115 Copynumber: 4.6 Consensus size: 115
7049008 TGTTTTATTT
* * * * * * * * * *
7049018 TTTTTCATATTTTCAACAGAAACTACATTCTTATCTTAAAAATGTCGTCTTTTTAATAAAAACTG
1 TTTTTCACATTTTCAACAAAAAATACATTATTATCTTAAAAACGTCATCTTTTCAACAAAGATTG
* * * * * *
7049083 CA-TTTTTTATCTTAAAAATATTATTTTTGTTGAATT-TTAAAAAT-ATT
66 CATTTTTTTATCTTAAAAACATTATCTTTATTAAATTCTAAAAAATAATC
* * * * * * ** *
7049130 TTTTTCATATTTTCAACAAAGAATGCGTT-TTAATATTAGAAAA-ATGGTC-TTTCAACAAAGAA
1 TTTTTCACATTTTCAACAAAAAATACATTATT-ATCTTA-AAAACGTCATCTTTTCAACAAAGAT
* * * * * *
7049192 TGCA--TTTTTATCTTAGAAGCATTATATTTTATTGAATTTTTAAAAAAT-ATA
64 TGCATTTTTTTATCTTAAAAACATTAT-CTTTATT-AAATTCTAAAAAATAATC
* * * * * * * * * * * *
7049243 TTTTTAATATTTTCAATAAAGACTATATTTTTATCTTAGAAATGTCATTTTTTCAGCAAAGACTG
1 TTTTTCACATTTTCAACAAAAAATACATTATTATCTTAAAAACGTCATCTTTTCAACAAAGATTG
* *
7049308 TATTTTTTTATCTTAAAAACATTATCTTTATTAAATTCTAAAAAATAATT
66 CATTTTTTTATCTTAAAAACATTATCTTTATTAAATTCTAAAAAATAATC
* * * * * ** * * * *
7049358 TTTTTCATATTTTCAGCAAAAAATACGTTGTTATCTTTAAAACGTTGTCTTTCCAATAAAAATTA
1 TTTTTCACATTTTCAACAAAAAATACATTATTATCTTAAAAACGTCATCTTTTCAACAAAGATTG
** * * * *
7049423 CATTTTTTTAATCTTAAAAATGTTGTCTTTCTTAAATTTTATAAAATAA-C
66 CATTTTTTT-ATCTTAAAAACATTATCTTTATTAAATTCTAAAAAATAATC
* * * *
7049473 TTTTTCACATTTTCAACAAATATTGCATTATTATCTTAAAAACGTCATCTTTTCAACAAAGGTTG
1 TTTTTCACATTTTCAACAAAAAATACATTATTATCTTAAAAACGTCATCTTTTCAACAAAGATTG
7049538 CATTTTT
66 CATTTTT
7049545 ATTTGAAAAA
Statistics
Matches: 319, Mismatches: 84, Indels: 21
0.75 0.20 0.05
Matches are distributed among these distances:
110 18 0.06
111 21 0.07
112 39 0.12
113 43 0.13
114 28 0.09
115 118 0.37
116 52 0.16
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.46
Consensus pattern (115 bp):
TTTTTCACATTTTCAACAAAAAATACATTATTATCTTAAAAACGTCATCTTTTCAACAAAGATTG
CATTTTTTTATCTTAAAAACATTATCTTTATTAAATTCTAAAAAATAATC
Found at i:7054778 original size:22 final size:21
Alignment explanation
Indices: 7054745--7054798 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
7054735 ATTTATATTT
* *
7054745 AATAA-ATGATATAATTGTTAA
1 AATAATATAATATAA-TGTAAA
7054766 AAT-ATATTAATATAATGTAAA
1 AATAATA-TAATATAATGTAAA
7054787 AATAATATAATA
1 AATAATATAATA
7054799 ATAAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 1 0.04
21 17 0.61
22 10 0.36
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (21 bp):
AATAATATAATATAATGTAAA
Found at i:7054802 original size:22 final size:22
Alignment explanation
Indices: 7054753--7054798 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
7054743 TTAATAAATG
*
7054753 ATATAATTGTTAAAATATATTA
1 ATATAATTGTAAAAATATATTA
7054775 ATATAA-TGTAAAAATA-ATATA
1 ATATAATTGTAAAAATATAT-TA
7054796 ATA
1 ATA
7054799 ATAAATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 2 0.09
21 14 0.64
22 6 0.27
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (22 bp):
ATATAATTGTAAAAATATATTA
Found at i:7054839 original size:18 final size:18
Alignment explanation
Indices: 7054797--7054844 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
7054787 AATAATATAA
* * *
7054797 TAATAAATAATATTCATT
1 TAATTAATAATATTAAAT
7054815 TAATTAATAATATTAAAT
1 TAATTAATAATATTAAAT
*
7054833 TATTTAATAATA
1 TAATTAATAATA
7054845 CTTGGGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATTAATAATATTAAAT
Found at i:7054900 original size:21 final size:21
Alignment explanation
Indices: 7054876--7054925 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7054866 TATACTAAAT
7054876 AATAATATCAT-ATTCATATAA
1 AATAATATCATAATTCA-ATAA
* * *
7054897 AATAATGTTATAATTTAATAA
1 AATAATATCATAATTCAATAA
7054918 AATAATAT
1 AATAATAT
7054926 TTAGTTACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (21 bp):
AATAATATCATAATTCAATAA
Found at i:7059206 original size:3 final size:3
Alignment explanation
Indices: 7059198--7059229 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7059188 TTCATTCATG
7059198 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7059230 TATTTTACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7059429 original size:2 final size:2
Alignment explanation
Indices: 7059422--7059446 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7059412 TTGTATTCTT
7059422 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7059447 TATCAGCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7060840 original size:144 final size:141
Alignment explanation
Indices: 7060508--7060914 Score: 477
Period size: 144 Copynumber: 2.9 Consensus size: 141
7060498 TGGGATTTTA
* *** *
7060508 AAATATCAAAAATCATGAAATATTAT-AGAATTAAGATCTGTAAAGTTTCATGAAAATCCAAACT
1 AAATATCAAAAATCATGAAATATTATGA-AATTAAGATCTGAAAAGTTTCATGAAAATTTGAGCT
* ** * * *
7060572 -TATG-AGGCCAAATTATGAAAATACTTTATAGGGGTATTTTAGTAAATTT-ACACTTTTTAAGG
65 CT-GGAAGGATAAATTATGAAAATACTTTATAAGGGTATTTTGGT-AATTTCACAC-TTTCAAGG
7060634 TACTACTGTGATTTC
127 TACTACTGTGATTTC
7060649 AAATATCAAAAATCATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATGAAAATTTGAGCTC
1 AAATATCAAAAATCATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATGAAAATTTGAGCTC
*
7060714 TGGAAGGATAAATTATGAAAATATCTTTATAAGGGTATTTTGGTAATTTCACACTTTCAGGGTAC
66 TGGAAGGATAAATTATGAAAATA-CTTTATAAGGGTATTTTGGTAATTTCACACTTTCAAGGTAC
*
7060779 TGCTGTGATTTC
130 TACTGTGATTTC
**
7060791 AAATGCA-CTAAAAATCATGAAATATTATGAAATTAAGATCT-AGAAAGTTTCACAAAAATTTGA
1 AAAT--ATC-AAAAATCATGAAATATTATGAAATTAAGATCTGA-AAAGTTTCATGAAAATTTGA
* * * ** *
7060854 GCTCAGAAAGGTTAAATTACAAAAATACCCTTAT-AGGGATATTTTGGTAATTTCACACTTT
62 GCTCTGGAAGGATAAATTATGAAAATA-CTTTATAAGGG-TATTTTGGTAATTTCACACTTT
7060915 GTCCAGTCCA
Statistics
Matches: 234, Mismatches: 22, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
141 58 0.25
142 48 0.21
143 28 0.12
144 100 0.43
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (141 bp):
AAATATCAAAAATCATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATGAAAATTTGAGCTC
TGGAAGGATAAATTATGAAAATACTTTATAAGGGTATTTTGGTAATTTCACACTTTCAAGGTACT
ACTGTGATTTC
Found at i:7061488 original size:49 final size:49
Alignment explanation
Indices: 7061404--7061503 Score: 139
Period size: 49 Copynumber: 2.0 Consensus size: 49
7061394 TTTTTTTTTT
* * *
7061404 AATCTTGTTTGAAAATGGTCCCCCTAAATAGAGGCTTCGAAACTTT-AA
1 AATCTTGTTTGAAAATGCTCCCCCCAAACAGAGGCTTCGAAACTTTGAA
* *
7061452 AATCTTGTTTGAAGATTGCTCCCCCCAAACAGAGGCTTTGAAACTTTGAA
1 AATCTTGTTTGAA-AATGCTCCCCCCAAACAGAGGCTTCGAAACTTTGAA
7061502 AA
1 AA
7061504 CGGCTCTCCT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
48 13 0.29
49 28 0.62
50 4 0.09
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (49 bp):
AATCTTGTTTGAAAATGCTCCCCCCAAACAGAGGCTTCGAAACTTTGAA
Found at i:7061649 original size:6 final size:6
Alignment explanation
Indices: 7061623--7061671 Score: 77
Period size: 6 Copynumber: 8.7 Consensus size: 6
7061613 TTTTGCTGTG
7061623 TTTTG- TTTTG- TTTTG- TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
7061668 TTTT
1 TTTT
7061672 TGGGGAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 15 0.35
6 28 0.65
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (6 bp):
TTTTGT
Found at i:7061655 original size:12 final size:11
Alignment explanation
Indices: 7061609--7061671 Score: 76
Period size: 12 Copynumber: 5.7 Consensus size: 11
7061599 TTTGAAAATC
*
7061609 TTGTTTTTGCT
1 TTGTTTTTGTT
*
7061620 GTG-TTTTGTT
1 TTGTTTTTGTT
7061630 TTG-TTTTGTT
1 TTGTTTTTGTT
7061640 TTGTTTTTGTTT
1 TTGTTTTTG-TT
7061652 TTGTTTTTGTTT
1 TTGTTTTTG-TT
7061664 TTGTTTTT
1 TTGTTTTT
7061672 TGGGGAAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
10 18 0.38
11 7 0.15
12 22 0.47
ACGTcount: A:0.00, C:0.02, G:0.19, T:0.79
Consensus pattern (11 bp):
TTGTTTTTGTT
Found at i:7062778 original size:60 final size:60
Alignment explanation
Indices: 7062654--7062811 Score: 266
Period size: 60 Copynumber: 2.7 Consensus size: 60
7062644 CAAATTTCTT
** *
7062654 ATACAAGTGCGAATGCAAGTGATGCAAATGTGAATGT-C-TTTCTATGATACAGATGTGA
1 ATACAAGTATGAATGTAAGTGATGCAAATGTGAATGTCCTTTTCTATGATACAGATGTGA
7062712 ATACAAGTATGAATGTAAGTGATGCAAATGTGAATGTCCTTTTCTATGATACAGATGTGA
1 ATACAAGTATGAATGTAAGTGATGCAAATGTGAATGTCCTTTTCTATGATACAGATGTGA
*
7062772 ATACAAGTATGAATGTAAGTGATGCAAATGCGAATGTCCT
1 ATACAAGTATGAATGTAAGTGATGCAAATGTGAATGTCCT
7062812 GTTTTGTTAT
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
58 34 0.36
59 1 0.01
60 59 0.63
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.30
Consensus pattern (60 bp):
ATACAAGTATGAATGTAAGTGATGCAAATGTGAATGTCCTTTTCTATGATACAGATGTGA
Found at i:7062860 original size:42 final size:42
Alignment explanation
Indices: 7062788--7062875 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
7062778 GTATGAATGT
* *
7062788 AAGTGATGCAAATGCGAATGTCCTGTTTTGTTATGCAGATGA
1 AAGTGATGCAAATGCGAATGTCCTGTTTTGTGATGCACATGA
* * * *
7062830 AAGTGATGCAAATGTGAATG-GCTTTCTTTGTGATGCACATGC
1 AAGTGATGCAAATGCGAATGTCCTGT-TTTGTGATGCACATGA
7062872 AAGT
1 AAGT
7062876 ATGAATATGA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 3 0.08
42 36 0.92
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (42 bp):
AAGTGATGCAAATGCGAATGTCCTGTTTTGTGATGCACATGA
Found at i:7062896 original size:156 final size:158
Alignment explanation
Indices: 7062670--7062966 Score: 368
Period size: 156 Copynumber: 1.9 Consensus size: 158
7062660 GTGCGAATGC
* * * *
7062670 AAGTGATGCAAATGTGAATGTCTTTCTATGATACAGATGTGAATACAAGTATGAATGTAAGTGAT
1 AAGTGATGCAAATGTGAATGGCTTTCTATGAT--AGATGTCAATACAAGTATGAATATAAGTGAC
* * *
7062735 GCAAATGTGAA-TGTCCTTTTCTATGATACAGATGTGAATACAAGTATGAATGTAAGTGATGCAA
64 ACAAATAT-AAGTGTCCTTTTCTATGATACAGATGTGAATACAAGTATGAATGCAAGTGATGCAA
7062799 ATGCGAATGTCCTGTTTTGTTATGCAGATGA
128 ATGCGAATGTCCTGTTTTGTTATGCAGATGA
* * *
7062830 AAGTGATGCAAATGTGAATGGCTTTCTTTG-T-GATG-CACATGCAAGTATGAATATGAGTGACA
1 AAGTGATGCAAATGTGAATGGCTTTCTATGATAGATGTCA-ATACAAGTATGAATATAAGTGACA
* * * *** *
7062892 CAAATATAAGTGTCCTTTTTTATGATGCAGATGTGATTGTGAGTATGAATGCGAGTGATGCAAAT
65 CAAATATAAGTGTCCTTTTCTATGATACAGATGTGAATACAAGTATGAATGCAAGTGATGCAAAT
*
7062957 GTGAATGTCC
130 GCGAATGTCC
7062967 ACTTTTTTGT
Statistics
Matches: 117, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
155 3 0.03
156 85 0.73
159 1 0.01
160 28 0.24
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (158 bp):
AAGTGATGCAAATGTGAATGGCTTTCTATGATAGATGTCAATACAAGTATGAATATAAGTGACAC
AAATATAAGTGTCCTTTTCTATGATACAGATGTGAATACAAGTATGAATGCAAGTGATGCAAATG
CGAATGTCCTGTTTTGTTATGCAGATGA
Found at i:7063149 original size:68 final size:68
Alignment explanation
Indices: 7063040--7063474 Score: 302
Period size: 68 Copynumber: 6.5 Consensus size: 68
7063030 TTTTTTTTTG
* * * *
7063040 TTTAAAATCTTCATCAAGTGCCAGGTAAACTAGACTTAAATTTTCACTGGGAGCTAGCTAAGC-G
1 TTTAAAATCTTTATCAGGTGCCAGGTAAACTAGACTTAAATTTTCACTGAGAGCTAGCTAAACTG
7063104 GCGC
66 G-GC
* * *
7063108 TTTAAAATCTTTATCGGGTGCTAGGTAAACTGGACTTAAATTTTCACTGAGAGCTAGCTAAACTG
1 TTTAAAATCTTTATCAGGTGCCAGGTAAACTAGACTTAAATTTTCACTGAGAGCTAGCTAAACTG
7063173 GGC
66 GGC
* ** * * * *
7063176 TTTAAAAAT-TTTTTTTGGTGCCAGATAAACTAGACTTAAAATTTTCA-TTAGAAGCCAGATAAA
1 TTT-AAAATCTTTATCAGGTGCCAGGTAAACTAGACTT-AAATTTTCACTGAG-AGCTAGCTAAA
*
7063239 CTGCGC
63 CTGGGC
* * * * * * * *
7063245 -TT-AAATTTTTATTA-GTGTCAGATAAA-TTGAACCTAAATTTTCA-TCA-AGTACTAGGTAAA
1 TTTAAAATCTTTATCAGGTGCCAGGTAAACTAG-ACTTAAATTTTCACTGAGAG--CTAGCTAAA
7063304 CTGGG-
63 CTGGGC
* * ** * * * * *
7063309 TTTAAAATCTTCATCAAGTGATATGTAAACTA-AGCTTAAATTTTCATTAAGTGCCAAG-TAAAC
1 TTTAAAATCTTTATCAGGTGCCAGGTAAACTAGA-CTTAAATTTTCACTGAGAG-CTAGCTAAAC
7063372 TGGGC
64 TGGGC
* * ** * * * *
7063377 -TTAAAATTTTTATTAGGTGGTAGGTAAACTAGTCTTAAATTTTCACTAAGAGCCAGCTAAGCTG
1 TTTAAAATCTTTATCAGGTGCCAGGTAAACTAGACTTAAATTTTCACTGAGAGCTAGCTAAACTG
*
7063441 GTC
66 GGC
* * *
7063444 TTTAAAATCTTCATCAGGTGTCAAGTAAACT
1 TTTAAAATCTTTATCAGGTGCCAGGTAAACT
7063475 GGTTTAAAAA
Statistics
Matches: 291, Mismatches: 57, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
63 2 0.01
65 26 0.09
66 31 0.11
67 83 0.29
68 118 0.41
69 31 0.11
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (68 bp):
TTTAAAATCTTTATCAGGTGCCAGGTAAACTAGACTTAAATTTTCACTGAGAGCTAGCTAAACTG
GGC
Found at i:7063164 original size:33 final size:33
Alignment explanation
Indices: 7063065--7063173 Score: 98
Period size: 33 Copynumber: 3.2 Consensus size: 33
7063055 AAGTGCCAGG
*
7063065 TAAACTAGACTTAAATTTTCACTGGGAGCTAGC
1 TAAACTGGACTTAAATTTTCACTGGGAGCTAGC
* * * *
7063098 TAAGC-GGCGCTTTAAAATCTTT-A-TCGGGTGCTAGG
1 TAAACTGG-AC-TT-AAAT-TTTCACT-GGGAGCTAGC
*
7063133 TAAACTGGACTTAAATTTTCACTGAGAGCTAGC
1 TAAACTGGACTTAAATTTTCACTGGGAGCTAGC
7063166 TAAACTGG
1 TAAACTGG
7063174 GCTTTAAAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
32 4 0.07
33 25 0.43
34 6 0.10
35 18 0.31
36 5 0.09
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (33 bp):
TAAACTGGACTTAAATTTTCACTGGGAGCTAGC
Found at i:7063248 original size:34 final size:33
Alignment explanation
Indices: 7063195--7063259 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
7063185 TTTTTTTGGT
7063195 GCCAGATAAACTAGACTTAAAATTTTCATTAGAA
1 GCCAGATAAACTAGACTT-AAATTTTCATTAGAA
* *
7063229 GCCAGATAAACT-GCGCTTAAATTTTTATTAG
1 GCCAGATAAACTAG-ACTTAAATTTTCATTAG
7063260 TGTCAGATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 13 0.46
34 15 0.54
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (33 bp):
GCCAGATAAACTAGACTTAAATTTTCATTAGAA
Found at i:7063361 original size:33 final size:33
Alignment explanation
Indices: 7063235--7063426 Score: 122
Period size: 34 Copynumber: 5.8 Consensus size: 33
7063225 AGAAGCCAGA
* * *
7063235 TAAACTGCGCTTAAATTTTTATT-AGTG-TCAGA
1 TAAACTGAGCTTAAATTTTCATTAAGTGAT-AGG
* * * *
7063267 TAAATTGAACCTAAATTTTCATCAAGT-ACTAGG
1 TAAACTGAGCTTAAATTTTCATTAAGTGA-TAGG
* * * * *
7063300 TAAACTGGGTTTAAAATCTTCATCAAGTGATATG
1 TAAACTGAGCTT-AAATTTTCATTAAGTGATAGG
* ** *
7063334 TAAACTAAGCTTAAATTTTCATTAAGTGCCAAG
1 TAAACTGAGCTTAAATTTTCATTAAGTGATAGG
* * * *
7063367 TAAACTGGGCTTAAAATTTTTATTAGGTGGTAGG
1 TAAACTGAGCTT-AAATTTTCATTAAGTGATAGG
*
7063401 TAAACT-AGTCTTAAATTTTCACTAAG
1 TAAACTGAG-CTTAAATTTTCATTAAG
7063427 AGCCAGCTAA
Statistics
Matches: 120, Mismatches: 33, Indels: 13
0.72 0.20 0.08
Matches are distributed among these distances:
32 17 0.14
33 50 0.42
34 52 0.43
35 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36
Consensus pattern (33 bp):
TAAACTGAGCTTAAATTTTCATTAAGTGATAGG
Found at i:7063370 original size:67 final size:67
Alignment explanation
Indices: 7063278--7063459 Score: 188
Period size: 67 Copynumber: 2.7 Consensus size: 67
7063268 AAATTGAACC
* * * * *
7063278 TAAATTTTCATCAAGTACTAGGTAAACTGGGTTTAAAATCTTCATCAAGTGATATGTAAACTAAG
1 TAAATTTTCATTAAGTGCCAAGTAAACTGGGTTTAAAATCTTCATCAAGTGATAGGTAAACT-AG
7063343 -CT
65 TCT
* * * * * *
7063345 TAAATTTTCATTAAGTGCCAAGTAAACTGGGCTTAAAATTTTTATTAGGTGGTAGGTAAACTAGT
1 TAAATTTTCATTAAGTGCCAAGTAAACTGGGTTTAAAATCTTCATCAAGTGATAGGTAAACTAGT
7063410 CT
66 CT
* * * *
7063412 TAAATTTTCACTAAGAGCC-AGCTAAGCTGGTCTTTAAAATCTTCATCA
1 TAAATTTTCATTAAGTGCCAAG-TAAACTGG-GTTTAAAATCTTCATCA
7063460 GGTGTCAAGT
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
66 4 0.04
67 77 0.83
68 12 0.13
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (67 bp):
TAAATTTTCATTAAGTGCCAAGTAAACTGGGTTTAAAATCTTCATCAAGTGATAGGTAAACTAGT
CT
Found at i:7063732 original size:240 final size:241
Alignment explanation
Indices: 7063443--7063877 Score: 617
Period size: 240 Copynumber: 1.8 Consensus size: 241
7063433 CTAAGCTGGT
* * *
7063443 CTTTAAAATCTTCATCAGGTGTCAAGTAAACTGGTTTAAAAATTCTTTTCATTGCATGCCAGATC
1 CTTTAAAATCTTCATCAGGTGTCAAATAAACTGGCTT-AAAATTCTTTTCATGGCATGCCAGATC
*
7063508 AACTAGGCTTAAATTTTCACTAGGAGCCAGCTAAGCTGGGCTTTAAAATCTTCATC-GAGTACCA
65 AACTAGGCTTAAATTTTCACTAGGAGCCAGCTAAGCTGAGCTTTAAAATCTTCATCAG-GTACCA
* * * *
7063572 GGTAAATTGGGTTTAAAATTTTT-TTTAGTGTAAGATAAACTAGGCTTAAAATCTTTATCGAGTG
129 GGTAAACTGGGCTTAAAATTTTTCTTTAGTGCAAGATAAACTAGGCTTAAAATCATTATCGAGTG
7063636 CCAGTTAAGCTAGACTTAAATTTTCATTAGGAGCCAAACAAAGCTAAG
194 CCAGTTAAGCTAGACTTAAATTTTCATTAGGAGCCAAACAAAGCTAAG
* ** *
7063684 CTTTAAAATCTTCATCGGGTG-CTAAATAAACTAGGCTT-AAATTCTTTTCATGGTGTGCTAGAT
1 CTTTAAAATCTTCATCAGGTGTC-AAATAAACT-GGCTTAAAATTCTTTTCATGGCATGCCAGAT
* * * * * *
7063747 CAACTGGGTTTAAATTTTCACTAGGAGCTAGCTAAGTTGAGCTTTAAAATCTTCATCAGGTGCTA
64 CAACTAGGCTTAAATTTTCACTAGGAGCCAGCTAAGCTGAGCTTTAAAATCTTCATCAGGTACCA
* * *
7063812 GGTAAACTGGGCTTAAAATTTTTCTTTGGTGCCAGATAAACTGGGCTTAAAATCATTATCGAGTG
129 GGTAAACTGGGCTTAAAATTTTTCTTTAGTGCAAGATAAACTAGGCTTAAAATCATTATCGAGTG
7063877 C
194 C
7063878 TAGCCAAGCT
Statistics
Matches: 169, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
240 99 0.59
241 66 0.39
242 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (241 bp):
CTTTAAAATCTTCATCAGGTGTCAAATAAACTGGCTTAAAATTCTTTTCATGGCATGCCAGATCA
ACTAGGCTTAAATTTTCACTAGGAGCCAGCTAAGCTGAGCTTTAAAATCTTCATCAGGTACCAGG
TAAACTGGGCTTAAAATTTTTCTTTAGTGCAAGATAAACTAGGCTTAAAATCATTATCGAGTGCC
AGTTAAGCTAGACTTAAATTTTCATTAGGAGCCAAACAAAGCTAAG
Found at i:7063734 original size:36 final size:36
Alignment explanation
Indices: 7063694--7063762 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
7063684 CTTTAAAATC
7063694 TTCATCGG-GTGCTAAATAAACTAGGCTTAAATTCTT
1 TTCAT-GGTGTGCTAAATAAACTAGGCTTAAATTCTT
* * * *
7063730 TTCATGGTGTGCTAGATCAACTGGGTTTAAATT
1 TTCATGGTGTGCTAAATAAACTAGGCTTAAATT
7063763 TTCACTAGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 2 0.07
36 26 0.93
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (36 bp):
TTCATGGTGTGCTAAATAAACTAGGCTTAAATTCTT
Found at i:7063809 original size:104 final size:102
Alignment explanation
Indices: 7063606--7064060 Score: 328
Period size: 104 Copynumber: 4.4 Consensus size: 102
7063596 TTAGTGTAAG
* * * * * ** *
7063606 ATAAACTAGGCTTAAAATCTTT-ATCGAGTGCCAGTTAAGCTAGACTTAAATTTTCATTAGGAGC
1 ATAAACTAGGCTTAAAATTTTTCAT-GGGTGCCAGATAAACTGGGTTTAAATTTTCACTAGGAG-
* * * * * *
7063670 CAAACAAAGCTAAGCTTTAAAATCTTCATCGGGTGCTAA
64 CTAGCTAAGTTGAGCTTTAAAATCTTCATCAGGTGCTAA
* * *
7063709 ATAAACTAGGCTTAAATTCTTTTCATGGTGTGCTAGATCAACTGGGTTTAAATTTTCACTAGGAG
1 ATAAACTAGGCTTAAAAT-TTTTCATGG-GTGCCAGATAAACTGGGTTTAAATTTTCACTAGGAG
*
7063774 CTAGCTAAGTTGAGCTTTAAAATCTTCATCAGGTGCTAG
64 CTAGCTAAGTTGAGCTTTAAAATCTTCATCAGGTGCTAA
* * * * * * * *
7063813 GTAAACTGGGCTTAAAATTTTTCTTTGGTGCCAGATAAACTGGGCTTAAAATCATT-A-TCGAGT
1 ATAAACTAGGCTTAAAATTTTTCATGGGTGCCAGATAAACTGGG-TTTAAAT-TTTCACTAG-GA
* *
7063876 GCTAGCCAAGCT-AGGCTTTAAAATCTTCATCAGGT-C-ACA
63 GCTAGCTAAGTTGA-GCTTTAAAATCTTCATCAGGTGCTA-A
* * * * * * * *
7063915 AGTAAACTAGACTTAAATTCTTTTCATGGTGTGCCAAATCAATTAGGCTTAAATTTTCACTAAGA
1 A-TAAACTAGGCTTAAAAT-TTTTCATGG-GTGCCAGATAAACTGGGTTTAAATTTTCACTAGGA
* * * * * * * *
7063980 GCCAACTAATTTGGGTTTTAAAATCTTTATCAGGTGCCAG
63 GCTAGCTAAGTTGAGCTTTAAAATCTTCATCAGGTGCTAA
* * * *
7064020 GTAAACTAGGCTTAAAATTTTTCTTTGGTGCTAGATAAACT
1 ATAAACTAGGCTTAAAATTTTTCATGGGTGCCAGATAAACT
7064061 AAGCTTAAAA
Statistics
Matches: 270, Mismatches: 66, Indels: 33
0.73 0.18 0.09
Matches are distributed among these distances:
101 1 0.00
102 29 0.11
103 86 0.32
104 108 0.40
105 45 0.17
106 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (102 bp):
ATAAACTAGGCTTAAAATTTTTCATGGGTGCCAGATAAACTGGGTTTAAATTTTCACTAGGAGCT
AGCTAAGTTGAGCTTTAAAATCTTCATCAGGTGCTAA
Found at i:7063828 original size:34 final size:34
Alignment explanation
Indices: 7063279--7063910 Score: 116
Period size: 34 Copynumber: 18.4 Consensus size: 34
7063269 AATTGAACCT
* * * *
7063279 AAATTTTCATCAAGTACTAGGTAAACTGGGTTTA
1 AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
* * * **
7063313 AAATCTTCATCAAGTGATATGTAAACTAAGCTT-
1 AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
* * * * *
7063346 AAATTTTCATTAAGTGCCAAGTAAACTGGGCTTA
1 AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
* * * * * *
7063380 AAATTTTTATTAGGTGGTAGGTAAACTAGTCTT-
1 AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
* * * * * * *
7063413 AAATTTTCA-CTAAGAGCCAGCTAAGCTGGTCTTTA
1 AAATCTTCATC-AGGTGCTAGGTAAACTGGGC-TTA
* *
7063448 AAATCTTCATCAGGTG-TCAAGTAAACT-GGTTTAA
1 AAATCTTCATCAGGTGCT-AGGTAAACTGGGCTT-A
* * * *
7063482 AAATTCTTTTCATTGCA--TGCCAGATCAACTAGGCTT-
1 AAA-TC--TTCA-T-CAGGTGCTAGGTAAACTGGGCTTA
* * * * *
7063518 AAATTTTCA-CTAGGAGCCAGCTAAGCTGGGCTTTA
1 AAATCTTCATC-AGGTGCTAGGTAAACTGGGC-TTA
* * * *
7063553 AAATCTTCATC-GAGTACCAGGTAAATTGGGTTTA
1 AAATCTTCATCAG-GTGCTAGGTAAACTGGGCTTA
* ** * * *
7063587 AAATTTTTTTTA-GTG-TAAGATAAACTAGGCTTA
1 AAATCTTCATCAGGTGCT-AGGTAAACTGGGCTTA
* * * * * *
7063620 AAATCTTTATC-GAGTGCCAGTTAAGCTAGACTT-
1 AAATCTTCATCAG-GTGCTAGGTAAACTGGGCTTA
* * * * *** **
7063653 AAATTTTCATTAGGAGCCAAACAAAGCTAAGCTTTA
1 AAATCTTCATCAGGTGCTAGGTAAA-CTGGGC-TTA
* ** *
7063689 AAATCTTCATCGGGTGCTAAATAAACTAGGCTTA
1 AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
* * * * *
7063723 AATTCTTTTCAT-GGTGTGCTAGATCAACTGGG-TTT
1 AAATC--TTCATCAG-GTGCTAGGTAAACTGGGCTTA
* * * ** *
7063758 AAATTTTCA-CTAGGAGCTAGCTAAGTTGAGCTTTA
1 AAATCTTCATC-AGGTGCTAGGTAAACTGGGC-TTA
7063793 AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
1 AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
* ** * *
7063827 AAATTTTTC-TTTGGTGCCAGATAAACTGGGCTTA
1 AAA-TCTTCATCAGGTGCTAGGTAAACTGGGCTTA
** * *
7063861 AAATCATT-ATC-GAGTGCTAGCCAAGCTAGGCTTTA
1 AAATC-TTCATCAG-GTGCTAGGTAAACTGGGC-TTA
7063896 AAATCTTCATCAGGT
1 AAATCTTCATCAGGT
7063911 CACAAGTAAA
Statistics
Matches: 429, Mismatches: 124, Indels: 89
0.67 0.19 0.14
Matches are distributed among these distances:
30 1 0.00
31 1 0.00
33 119 0.28
34 148 0.34
35 96 0.22
36 45 0.10
37 12 0.03
38 5 0.01
39 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (34 bp):
AAATCTTCATCAGGTGCTAGGTAAACTGGGCTTA
Found at i:7063923 original size:207 final size:207
Alignment explanation
Indices: 7063676--7064077 Score: 583
Period size: 207 Copynumber: 1.9 Consensus size: 207
7063666 GAGCCAAACA
* *
7063676 AAGCTAAGCTTTAAAATCTTCATCGGGTGCTAAATAAACTAGGCTTAAATTCTTTTCATGGTGTG
1 AAGCTAAGCTTTAAAATCTTCATCAGGTGCTAAATAAACTAGACTTAAATTCTTTTCATGGTGTG
* * * * * * *
7063741 CTAGATCAACTGGGTTTAAATTTTCACTAGGAGCTAGCTAAGTTGAGCTTTAAAATCTTCATCAG
66 CCAAATCAACTAGGCTTAAATTTTCACTAAGAGCCAACTAAGTTGAGCTTTAAAATCTTCATCAG
* * **
7063806 GTGCTAGGTAAACTGGGCTTAAAATTTTTCTTTGGTGCCAGATAAACTGGGCTTAAAATCATTAT
131 GTGCCAGGTAAACTAGGCTTAAAATTTTTCTTTGGTGCCAGATAAACTAAGCTTAAAATCATTAT
7063871 CGAGTGCTAGCC
196 CGAGTGCTAGCC
*
7063883 AAGCTAGGCTTTAAAATCTTCATCAGGT-C-ACAAGTAAACTAGACTTAAATTCTTTTCATGGTG
1 AAGCTAAGCTTTAAAATCTTCATCAGGTGCTA-AA-TAAACTAGACTTAAATTCTTTTCATGGTG
* * * * *
7063946 TGCCAAATCAATTAGGCTTAAATTTTCACTAAGAGCCAACTAATTTGGGTTTTAAAATCTTTATC
64 TGCCAAATCAACTAGGCTTAAATTTTCACTAAGAGCCAACTAAGTTGAGCTTTAAAATCTTCATC
* *
7064011 AGGTGCCAGGTAAACTAGGCTTAAAATTTTTCTTTGGTGCTAGATAAACTAAGCTTAAAATCTTT
129 AGGTGCCAGGTAAACTAGGCTTAAAATTTTTCTTTGGTGCCAGATAAACTAAGCTTAAAATCATT
7064076 AT
194 AT
7064078 TGGATACCAA
Statistics
Matches: 172, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
205 1 0.01
206 3 0.02
207 168 0.98
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (207 bp):
AAGCTAAGCTTTAAAATCTTCATCAGGTGCTAAATAAACTAGACTTAAATTCTTTTCATGGTGTG
CCAAATCAACTAGGCTTAAATTTTCACTAAGAGCCAACTAAGTTGAGCTTTAAAATCTTCATCAG
GTGCCAGGTAAACTAGGCTTAAAATTTTTCTTTGGTGCCAGATAAACTAAGCTTAAAATCATTAT
CGAGTGCTAGCC
Found at i:7067759 original size:20 final size:18
Alignment explanation
Indices: 7067736--7067773 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 18
7067726 TCTTCAGATA
7067736 ATTTTATTCATGTTTTTATT
1 ATTTTATT-AT-TTTTTATT
7067756 ATTTTATTATTTTTTATT
1 ATTTTATTATTTTTTATT
7067774 TTACTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 2 0.11
20 8 0.44
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTTATTATTTTTTATT
Found at i:7068198 original size:10 final size:10
Alignment explanation
Indices: 7068183--7068210 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
7068173 TTAATATACC
7068183 CAATCAACAA
1 CAATCAACAA
7068193 CAATCAACAA
1 CAATCAACAA
7068203 CAATCAAC
1 CAATCAAC
7068211 TATATCCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.57, C:0.32, G:0.00, T:0.11
Consensus pattern (10 bp):
CAATCAACAA
Found at i:7069230 original size:144 final size:144
Alignment explanation
Indices: 7069039--7069299 Score: 345
Period size: 144 Copynumber: 1.8 Consensus size: 144
7069029 TTTAAAACAT
*
7069039 AAAAAATCATGAAATATTATAGAATTGAGATATAAAAAGTTTCATGAAAATT-TGAAC-TCAGAA
1 AAAAAATCATGAAATATTATAGAATTAAGATATAAAAAGTTTCATGAAAATTCT-AACTTCAGAA
*
7069102 AGGTCAAATCACTAAAATAACT-TTATAA-GGGTATTTTGGTAATTTCATACTTTTCGAGGACTG
65 AGG-CAAATCACAAAAAT-ACTCTT-TAAGGGGTATTTTGGTAATTTCATACTTTTCGAGGACTG
7069165 CTATGATTTCAAATCCAC
127 CTATGATTTCAAATCCAC
* * *
7069183 AAAAAATCATGAAATATTAT-GAAATTAAGATCTAAGAAA-TTTCATGAAAATTCTAGCTTGAGA
1 AAAAAATCATGAAATATTATAG-AATTAAGATATAA-AAAGTTTCATGAAAATTCTAACTTCAGA
* * * *
7069246 ATGGCAAATTACAAAAATACTCTTTAAGGGGTATTTTGGTAATTTTATATTTTT
64 AAGGCAAATCACAAAAATACTCTTTAAGGGGTATTTTGGTAATTTCATACTTTT
7069300 GGGTACTATT
Statistics
Matches: 102, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
143 7 0.07
144 84 0.82
145 11 0.11
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (144 bp):
AAAAAATCATGAAATATTATAGAATTAAGATATAAAAAGTTTCATGAAAATTCTAACTTCAGAAA
GGCAAATCACAAAAATACTCTTTAAGGGGTATTTTGGTAATTTCATACTTTTCGAGGACTGCTAT
GATTTCAAATCCAC
Found at i:7069421 original size:125 final size:126
Alignment explanation
Indices: 7069195--7069423 Score: 324
Period size: 125 Copynumber: 1.8 Consensus size: 126
7069185 AAAATCATGA
*
7069195 AATATTATGAAATTAAGATCTAAGAAATTTCATGAAAATTCTAGCTTGAGAATGGCAAATTACAA
1 AATATTATGAAATTAAGATCTAAGAAAATTCATGAAAATTCTAGCTTGAGAATGGCAAATTACAA
* *
7069260 AAATACTCTTTAAGGGGTATTTTGGTAATTTTATATTTTTGGGTACTATTGTGAATTATGT
66 AAATACCCTTTAAGGGGTATTTTGGTAATTTCATATTTTTGGGTACTATTGTGAATTATGT
* *
7069321 AATATTATGAAATTAAGATCTAA-AAAATTCATGAAAA-TCTGAGCTTTG-TAA-GGATAAATTA
1 AATATTATGAAATTAAGATCTAAGAAAATTCATGAAAATTCT-AGC-TTGAGAATGG-CAAATTA
**
7069382 TGAAAATACCC-TTATAGGGGTATTTTGGTAATTTCATATTTT
63 CAAAAATACCCTTTA-AGGGGTATTTTGGTAATTTCATATTTT
7069424 ATGTACTGCT
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
124 8 0.09
125 58 0.63
126 26 0.28
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (126 bp):
AATATTATGAAATTAAGATCTAAGAAAATTCATGAAAATTCTAGCTTGAGAATGGCAAATTACAA
AAATACCCTTTAAGGGGTATTTTGGTAATTTCATATTTTTGGGTACTATTGTGAATTATGT
Found at i:7075920 original size:7 final size:7
Alignment explanation
Indices: 7075910--7075934 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7075900 AAGGAAAATG
7075910 AAAATAA
1 AAAATAA
7075917 AAAATAA
1 AAAATAA
7075924 AAAATAA
1 AAAATAA
7075931 AAAA
1 AAAA
7075935 GTTTATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:7076027 original size:17 final size:17
Alignment explanation
Indices: 7076005--7076046 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
7075995 AAATGTTAAA
* *
7076005 TAATAATTTTATTAATG
1 TAATAATTATATAAATG
*
7076022 TAATAAATATATAAATG
1 TAATAATTATATAAATG
7076039 T-ATAATTA
1 TAATAATTA
7076047 AATTAATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
TAATAATTATATAAATG
Found at i:7076963 original size:14 final size:15
Alignment explanation
Indices: 7076944--7076983 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
7076934 GTAGATTTCA
*
7076944 AAAAAATAAAAT-AT
1 AAAAAATAAAATAAG
*
7076958 AAAAAATAAGATAAG
1 AAAAAATAAAATAAG
7076973 AAAAAATAAAA
1 AAAAAATAAAA
7076984 AAAAACTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (15 bp):
AAAAAATAAAATAAG
Found at i:7078663 original size:18 final size:18
Alignment explanation
Indices: 7078599--7078690 Score: 73
Period size: 18 Copynumber: 5.0 Consensus size: 18
7078589 TGCAAGAATC
*
7078599 TCATGCAAATACATTAATTA
1 TCATGCAAATATA-TAA-TA
7078619 TCATGC-AATA-ATAACTA
1 TCATGCAAATATATAA-TA
*
7078636 -CAATGTAAATATATAATA
1 TC-ATGCAAATATATAATA
*
7078654 TCATGCAAATATAAAATA
1 TCATGCAAATATATAATA
* *
7078672 CCATACAAATATATTAATA
1 TCATGCAAATATA-TAATA
7078691 ACCATTCATG
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
16 1 0.02
17 8 0.13
18 32 0.53
19 13 0.22
20 6 0.10
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (18 bp):
TCATGCAAATATATAATA
Found at i:7078896 original size:24 final size:24
Alignment explanation
Indices: 7078867--7078912 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
7078857 TTATGTAAGT
7078867 AAATATATTAATAATCATGCAAGC
1 AAATATATTAATAATCATGCAAGC
7078891 AAATATATTAATAATCATGCAA
1 AAATATATTAATAATCATGCAA
7078913 ACATGCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (24 bp):
AAATATATTAATAATCATGCAAGC
Found at i:7078943 original size:20 final size:20
Alignment explanation
Indices: 7078918--7078966 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
7078908 TGCAAACATG
7078918 CAATTAAATATATAATTATA
1 CAATTAAATATATAATTATA
7078938 CAATTAAATATATAATTATA
1 CAATTAAATATATAATTATA
*
7078958 CAAATAAAT
1 CAATTAAAT
7078967 CTATCAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (20 bp):
CAATTAAATATATAATTATA
Found at i:7079027 original size:21 final size:21
Alignment explanation
Indices: 7078922--7079038 Score: 78
Period size: 20 Copynumber: 5.5 Consensus size: 21
7078912 AACATGCAAT
* *
7078922 TAAATATA-TAATTATACAAT
1 TAAATATATTAATCATACAAA
*
7078942 TAAATATA-TAATTATACAAA
1 TAAATATATTAATCATACAAA
* * * *
7078962 TAAATCTATCAATAATTATGAAA
1 TAAATATATTAATCA-TA-CAAA
* *
7078985 -AAATATTAATAAATCACACAAA
1 TAAATA-T-ATTAATCATACAAA
*
7079007 TAAATATATTAATCATGCAAA
1 TAAATATATTAATCATACAAA
*
7079028 CAAATATATTA
1 TAAATATATTA
7079039 GGCAAATAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
20 26 0.34
21 25 0.32
22 10 0.13
23 10 0.13
24 6 0.08
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (21 bp):
TAAATATATTAATCATACAAA
Found at i:7079080 original size:31 final size:30
Alignment explanation
Indices: 7079018--7079094 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 30
7079008 AAATATATTA
*
7079018 ATCATGCAAACAAATATATTAGGCAAATAAATT
1 ATCATGCAAA-ATA-ATATTAGGCAAATAAA-T
* **
7079051 ATCATGCAAAATAATATTAGTCATGTAAAT
1 ATCATGCAAAATAATATTAGGCAAATAAAT
7079081 -TCATGCAACAATAA
1 ATCATGCAA-AATAA
7079095 ATACCATGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 8 0.21
30 6 0.15
31 13 0.33
32 2 0.05
33 10 0.26
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.29
Consensus pattern (30 bp):
ATCATGCAAAATAATATTAGGCAAATAAAT
Found at i:7079737 original size:14 final size:16
Alignment explanation
Indices: 7079718--7079757 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
7079708 TTTTGACTAA
7079718 AAAAAAATT-AAAT-T
1 AAAAAAATTAAAATAT
7079732 AAAAAAATTAAAATAT
1 AAAAAAATTAAAATAT
7079748 AAATAAAATT
1 AAA-AAAATT
7079758 TAGGGCTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.39
15 4 0.17
16 4 0.17
17 6 0.26
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAAATTAAAATAT
Found at i:7080031 original size:40 final size:40
Alignment explanation
Indices: 7079968--7080043 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
7079958 ATCTCAAAAG
**
7079968 CTCCCCCACAACTACGGCATTGAAACTTTTGAAAAAATAA
1 CTCCCCCACAACTAAAGCATTGAAACTTTTGAAAAAATAA
**
7080008 CTCCCCCACAACTAAAGTTTTGAAACTTTTGAAAAA
1 CTCCCCCACAACTAAAGCATTGAAACTTTTGAAAAA
7080044 TAAAAATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.39, C:0.26, G:0.09, T:0.25
Consensus pattern (40 bp):
CTCCCCCACAACTAAAGCATTGAAACTTTTGAAAAAATAA
Found at i:7080135 original size:42 final size:42
Alignment explanation
Indices: 7080077--7080214 Score: 159
Period size: 43 Copynumber: 3.2 Consensus size: 42
7080067 GGCATTGAAA
* * * *
7080077 AAAATGCTTCCTTACAACTGAGGCTTTGGAACATTAAAAAAT
1 AAAATGCTCCCATACAACTGAGGCTTTGGAACTTTGAAAAAT
* *
7080119 AAAATGCTCCCATACAATTGAGGCTTTGGAACTTTGGAAAAGT
1 AAAATGCTCCCATACAACTGAGGCTTTGGAACTTT-GAAAAAT
* * * * *
7080162 AAAATGATCCCACACAGCTAAGGCTTTGAAACTTTTGAAAAAT
1 AAAATGCTCCCATACAACTGAGGCTTTGGAAC-TTTGAAAAAT
7080205 AAAATGCTCC
1 AAAATGCTCC
7080215 TCCATTGAAG
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
42 31 0.39
43 46 0.57
44 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (42 bp):
AAAATGCTCCCATACAACTGAGGCTTTGGAACTTTGAAAAAT
Found at i:7084015 original size:6 final size:6
Alignment explanation
Indices: 7084004--7084080 Score: 57
Period size: 6 Copynumber: 12.0 Consensus size: 6
7083994 CCCAATGAGC
* *
7084004 TTTTAT TTTTAT TTTTAT TATTTAAT ATATAT ATTTTAT TTTTAT TTTT-T
1 TTTTAT TTTTAT TTTTAT T-TTT-AT TTTTAT -TTTTAT TTTTAT TTTTAT
**
7084054 TTATCTAT TAATAT TTTTAT TATTTAT
1 TT-T-TAT TTTTAT TTTTAT T-TTTAT
7084081 CTAATTATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
5 3 0.05
6 34 0.61
7 15 0.27
8 4 0.07
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (6 bp):
TTTTAT
Found at i:7084046 original size:33 final size:31
Alignment explanation
Indices: 7084004--7084080 Score: 100
Period size: 33 Copynumber: 2.4 Consensus size: 31
7083994 CCCAATGAGC
*
7084004 TTTTATTTTTATTTTTATTATTTAATATATAT
1 TTTTATTTTTATTTTTATTATCTAATA-ATAT
* *
7084036 ATTTTATTTTTATTTTTTTTATCTATTAATAT
1 -TTTTATTTTTATTTTTATTATCTAATAATAT
7084068 TTTTATTATTTAT
1 TTTTATT-TTTAT
7084081 CTAATTATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
31 7 0.17
32 9 0.22
33 24 0.60
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (31 bp):
TTTTATTTTTATTTTTATTATCTAATAATAT
Found at i:7084068 original size:19 final size:21
Alignment explanation
Indices: 7084045--7084094 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
7084035 TATTTTATTT
7084045 TTATTTTTTTTATCTAT-TAA
1 TTATTTTTTTTATCTATCTAA
* *
7084065 -TATTTTTATTATTTATCTAA
1 TTATTTTTTTTATCTATCTAA
7084085 TTATTTTTTT
1 TTATTTTTTT
7084095 GGTTATCTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 14 0.56
20 3 0.12
21 8 0.32
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (21 bp):
TTATTTTTTTTATCTATCTAA
Found at i:7084083 original size:23 final size:22
Alignment explanation
Indices: 7084053--7084116 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 22
7084043 TTTTATTTTT
7084053 TTTATCTATTAATATTTTTATTA
1 TTTATCTA-TAATATTTTTATTA
* *
7084076 TTTATCTA-ATTATTTTT-TTG
1 TTTATCTATAATATTTTTATTA
* *
7084096 GTTATCTACTAATATATTTAT
1 TTTATCTA-TAATATTTTTAT
7084117 CTTTTTTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
20 9 0.27
21 8 0.24
22 7 0.21
23 9 0.27
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.62
Consensus pattern (22 bp):
TTTATCTATAATATTTTTATTA
Found at i:7084973 original size:5 final size:5
Alignment explanation
Indices: 7084956--7085059 Score: 56
Period size: 5 Copynumber: 20.4 Consensus size: 5
7084946 TTTTTTTTGT
** *
7084956 TTTTA -TTTA -TTTA TTTTA TTATTA TTATTA TTATTA TTAGA TTATA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TT-TTA TT-TTA TTTTA TTTTA
* * *
7085002 -TTTG TTTAA TATTT- GTTTA TTTTA TTTT- TCTTTA TTTTCA TTTTTA
1 TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA T-TTTA TTTT-A -TTTTA
7085048 TTTTA TTTTA TT
1 TTTTA TTTTA TT
7085060 ATTTTGTTTT
Statistics
Matches: 80, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
4 14 0.17
5 40 0.50
6 22 0.28
7 4 0.05
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:7084979 original size:3 final size:3
Alignment explanation
Indices: 7084966--7084994 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7084956 TTTTATTTAT
7084966 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7084995 GATTATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7085069 original size:13 final size:13
Alignment explanation
Indices: 7084956--7085069 Score: 56
Period size: 13 Copynumber: 8.3 Consensus size: 13
7084946 TTTTTTTTGT
7084956 TTTTATT-TATTTA
1 TTTTATTAT-TTTA
7084969 TTTTATTATTATTA
1 TTTTATTATT-TTA
**
7084983 TTATTATTATTAGA
1 TT-TTATTATTTTA
*
7084997 TTATATT-TGTTTAA
1 TTTTATTAT-TTT-A
*
7085011 TATTTGTTTATTTTA
1 T-TTT-ATTATTTTA
*
7085026 TTTTTCTTTATTTTCA
1 -TTTT-ATTATTTT-A
7085042 -TTT-TTATTTTA
1 TTTTATTATTTTA
*
7085053 TTTTATTATTTTG
1 TTTTATTATTTTA
7085066 TTTT
1 TTTT
7085070 CTTTAAATAA
Statistics
Matches: 80, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
11 1 0.01
12 11 0.14
13 24 0.30
14 14 0.17
15 22 0.28
16 7 0.09
17 1 0.01
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTATTATTTTA
Found at i:7085149 original size:61 final size:57
Alignment explanation
Indices: 7085066--7085301 Score: 185
Period size: 58 Copynumber: 4.1 Consensus size: 57
7085056 TATTATTTTG
* ** * *
7085066 TTTTCTTTAAATAAAATTTAAAAAAATAT-TTTTG-AAGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAATAAGTTTTCAAAAAA-ATATTTTTGAAGAAAAGTTGAAAGTATCAAT
* * *
7085122 TTTTCTTGAAAATAAGCTTTTTTTAAAAAAATATTTTTGGAGAAAAGTTAAAAGTATCAAT
1 TTTTCTT-AAAATAAG---TTTTCAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAAT
* *** *
7085183 TCTCTT-TAAAAATAAGTTTTCAAAAATGGATTTTTG-AGAAAAAATTGAAAGTATCAAT
1 T-T-TTCTTAAAATAAGTTTTCAAAAAAATATTTTTGAAG-AAAAGTTGAAAGTATCAAT
* * ** *
7085241 TTTCCTTAGAAACAAGTTTTCAAAAGTGA-ATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTA-AAATAAGTTTTCAAAA-AAATATTTTTGAAGAAAAGTTGAAAGTATCAAT
7085299 TTT
1 TTT
7085302 CCCTAAAAAT
Statistics
Matches: 145, Mismatches: 22, Indels: 24
0.76 0.12 0.13
Matches are distributed among these distances:
56 8 0.06
57 11 0.08
58 77 0.53
59 3 0.02
60 13 0.09
61 29 0.20
62 2 0.01
63 2 0.01
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (57 bp):
TTTTCTTAAAATAAGTTTTCAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAAT
Found at i:7085236 original size:58 final size:59
Alignment explanation
Indices: 7085093--7085314 Score: 256
Period size: 58 Copynumber: 3.8 Consensus size: 59
7085083 TTAAAAAAAT
* * * *
7085093 ATTTTTGA-AGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTTTTTAAAAA-AA
1 ATTTTTGAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAG---TTTTCAAAAATGA
* * * *
7085153 TATTTTTG-GAGAAAAGTTAAAAGTATCAATTCTCTTTAAAAATAAGTTTTCAAAAATGG
1 -ATTTTTGAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTTCAAAAATGA
* * * *
7085212 ATTTTTGAGA-AAAAATTGAAAGTATCAATTTTCCTTAGAAACAAGTTTTCAAAAGTGA
1 ATTTTTGAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTTCAAAAATGA
*
7085270 ATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCCTAAAAATAAG
1 ATTTTTGAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAG
7085315 AGGAAAAGTT
Statistics
Matches: 137, Mismatches: 20, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
58 96 0.70
59 2 0.01
61 39 0.28
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (59 bp):
ATTTTTGAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTTCAAAAATGA
Found at i:7091169 original size:18 final size:18
Alignment explanation
Indices: 7091105--7091196 Score: 80
Period size: 18 Copynumber: 5.0 Consensus size: 18
7091095 TGCAACAATG
7091105 TCATGCAAATATATCAATTA
1 TCATGCAAATATAT-AA-TA
*
7091125 TCATGC-AATA-ATAACAA
1 TCATGCAAATATATAA-TA
* *
7091142 TAATGTAAATATATAATA
1 TCATGCAAATATATAATA
*
7091160 TCATGCAAATATAAAATA
1 TCATGCAAATATATAATA
* *
7091178 CCATACAAATATATTAATA
1 TCATGCAAATATA-TAATA
7091197 ACCATTCATG
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
17 7 0.12
18 33 0.57
19 12 0.21
20 6 0.10
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.32
Consensus pattern (18 bp):
TCATGCAAATATATAATA
Found at i:7091381 original size:27 final size:26
Alignment explanation
Indices: 7091319--7091417 Score: 90
Period size: 24 Copynumber: 4.0 Consensus size: 26
7091309 GCAATTATAT
7091319 ATCATGCAAAT---AAAATATTAATA
1 ATCATGCAAATGCAAAAATATTAATA
7091342 ATCATGC-AA-GCAAAAATATTAATA
1 ATCATGCAAATGCAAAAATATTAATA
7091366 ATCATGCAATATGCAATTAAATA-T-ATA
1 ATCATGCAA-ATGCAA--AAATATTAATA
* *
7091393 ATCATACAAAT--AAATATATTAATA
1 ATCATGCAAATGCAAAAATATTAATA
7091417 A
1 A
7091418 ATCACACGAA
Statistics
Matches: 64, Mismatches: 2, Indels: 19
0.75 0.02 0.22
Matches are distributed among these distances:
22 6 0.09
23 8 0.12
24 25 0.39
25 1 0.02
26 3 0.05
27 15 0.23
28 1 0.02
29 5 0.08
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGCAAATGCAAAAATATTAATA
Found at i:7091429 original size:25 final size:25
Alignment explanation
Indices: 7091392--7091454 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
7091382 TTAAATATAT
* *
7091392 AATCATACAAATAAATATATTAATA
1 AATCACACAAATAAATATACTAATA
* *
7091417 AATCACACGAATAAATATACTAATC
1 AATCACACAAATAAATATACTAATA
* *
7091442 ATTCAAACAAATA
1 AATCACACAAATA
7091455 TATTAGGCAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (25 bp):
AATCACACAAATAAATATACTAATA
Found at i:7091482 original size:16 final size:18
Alignment explanation
Indices: 7091461--7091502 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
7091451 AATATATTAG
7091461 GCAAATAA-ATTA-TCAT
1 GCAAATAATATTAGTCAT
7091477 GCAAATATAATATTAGTCAT
1 GC-AA-ATAATATTAGTCAT
7091497 GCAAAT
1 GCAAAT
7091503 TTATGCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.09
17 2 0.09
18 6 0.27
19 6 0.27
20 6 0.27
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.31
Consensus pattern (18 bp):
GCAAATAATATTAGTCAT
Found at i:7091498 original size:20 final size:18
Alignment explanation
Indices: 7091465--7091502 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
7091455 TATTAGGCAA
7091465 ATAAATTATCATGCAAAT
1 ATAAATTATCATGCAAAT
7091483 ATAATATTAGTCATGCAAAT
1 ATAA-ATTA-TCATGCAAAT
7091503 TTATGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAAATTATCATGCAAAT
Found at i:7092106 original size:11 final size:12
Alignment explanation
Indices: 7092078--7092107 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7092068 ACTAAAAAAT
7092078 CAAAAATTAAAC
1 CAAAAATTAAAC
7092090 CAAAAATTAAAC
1 CAAAAATTAAAC
*
7092102 TAAAAA
1 CAAAAA
7092108 AATAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (12 bp):
CAAAAATTAAAC
Found at i:7092538 original size:23 final size:22
Alignment explanation
Indices: 7092500--7092542 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
7092490 GTCTAAAAAA
*
7092500 ATTAAAATATAAAAAATTATTT
1 ATTAAAACATAAAAAATTATTT
7092522 ATTAAATACATAAAAAATTAT
1 ATTAAA-ACATAAAAAATTAT
7092543 AAAAAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
ATTAAAACATAAAAAATTATTT
Found at i:7092777 original size:23 final size:23
Alignment explanation
Indices: 7092750--7092793 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7092740 TATTTTTTAG
*
7092750 AAAAAGAAAAAGTAAAAAAGGAT
1 AAAAAGAAAAAATAAAAAAGGAT
*
7092773 AAAAATAAAAAATAAAAAAGG
1 AAAAAGAAAAAATAAAAAAGG
7092794 TTTAGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (23 bp):
AAAAAGAAAAAATAAAAAAGGAT
Found at i:7097459 original size:6 final size:6
Alignment explanation
Indices: 7097448--7097504 Score: 66
Period size: 6 Copynumber: 10.0 Consensus size: 6
7097438 AAAGATCAAA
* * *
7097448 AATTTT AATTTT GATTTT AATTTT AATTGT GATTTT AA--TT AATTTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT
7097494 -ATTTT AATTTT
1 AATTTT AATTTT
7097505 TTATGTTTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
4 4 0.10
5 5 0.12
6 33 0.79
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (6 bp):
AATTTT
Found at i:7097471 original size:18 final size:18
Alignment explanation
Indices: 7097448--7097504 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
7097438 AAAGATCAAA
7097448 AATTTTAATTTTGATTTT
1 AATTTTAATTTTGATTTT
*
7097466 AATTTTAATTGTGATTTT
1 AATTTTAATTTTGATTTT
7097484 AA--TTAATTTT-ATTTT
1 AATTTTAATTTTGATTTT
7097499 AATTTT
1 AATTTT
7097505 TTATGTTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
15 7 0.20
16 7 0.20
17 2 0.06
18 19 0.54
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (18 bp):
AATTTTAATTTTGATTTT
Found at i:7098036 original size:20 final size:20
Alignment explanation
Indices: 7098011--7098052 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7098001 GCTAGGAATA
7098011 TTCTAGGAATTTAGTTAAAT
1 TTCTAGGAATTTAGTTAAAT
*
7098031 TTCTAGGAATTTAGTTGAAT
1 TTCTAGGAATTTAGTTAAAT
7098051 TT
1 TT
7098053 TTGAGTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.05, G:0.17, T:0.48
Consensus pattern (20 bp):
TTCTAGGAATTTAGTTAAAT
Found at i:7098439 original size:18 final size:18
Alignment explanation
Indices: 7098412--7098489 Score: 70
Period size: 18 Copynumber: 4.2 Consensus size: 18
7098402 AGGTATCTCT
* *
7098412 TTTTCT-TTTTTTTTTTA
1 TTTTCTATTTTATTATTA
7098429 TTTTCTATTTTAATT-TTA
1 TTTTCTATTTT-ATTATTA
*
7098447 TTATTATTATTATTATTATTA
1 TT-TT-CTATT-TTATTATTA
*
7098468 CTTTCTATTTTATTATTA
1 TTTTCTATTTTATTATTA
7098486 TTTT
1 TTTT
7098490 ATTTGTGTGA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
17 6 0.12
18 21 0.42
19 8 0.16
20 9 0.18
21 6 0.12
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTCTATTTTATTATTA
Found at i:7098452 original size:3 final size:3
Alignment explanation
Indices: 7098444--7098492 Score: 59
Period size: 3 Copynumber: 16.7 Consensus size: 3
7098434 TATTTTAATT
7098444 TTA TTA TTA TTA TTA TTA TTA TTA CTT- TCTA TT- TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA
7098488 TTA TT
1 TTA TT
7098493 TGTGTGATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 5 0.12
3 33 0.80
4 3 0.07
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7098670 original size:22 final size:20
Alignment explanation
Indices: 7098641--7098683 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7098631 ATGAATTTGA
* *
7098641 TTATT-ATATACTTGCATGT
1 TTATTAATATATTTGCATGG
7098660 TTATTAATATATTTGCATGG
1 TTATTAATATATTTGCATGG
7098680 TTAT
1 TTAT
7098684 ATATTATTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.53
Consensus pattern (20 bp):
TTATTAATATATTTGCATGG
Found at i:7099427 original size:11 final size:11
Alignment explanation
Indices: 7099406--7099439 Score: 50
Period size: 11 Copynumber: 2.9 Consensus size: 11
7099396 ATAAGAAATC
7099406 AAAATAAAAAAG
1 AAAA-AAAAAAG
7099418 AAAAAAAAAAG
1 AAAAAAAAAAG
7099429 AAAAAGAAAAA
1 AAAAA-AAAAA
7099440 CATGTGATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7107172 original size:3 final size:3
Alignment explanation
Indices: 7107164--7107206 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
7107154 TAGTATGATA
* *
7107164 TAT TAT TAT ATAT TAT AAC TA- TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7107207 TCTTTATCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:7108204 original size:12 final size:14
Alignment explanation
Indices: 7108168--7108201 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7108158 TTTGTTTTCA
*
7108168 GTTATTTTTCTGGT
1 GTTATTTTACTGGT
7108182 GTTATTTTACTGGT
1 GTTATTTTACTGGT
7108196 -TTATTT
1 GTTATTT
7108202 ACTCATTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.65
Consensus pattern (14 bp):
GTTATTTTACTGGT
Found at i:7108369 original size:28 final size:27
Alignment explanation
Indices: 7108306--7108358 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
7108296 TTAAATATAA
7108306 TAATAAAAAATCTTTTCAAATAAGTTG
1 TAATAAAAAATCTTTTCAAATAAGTTG
7108333 TAATAAAAAATCTTTTCAAATAAGTT
1 TAATAAAAAATCTTTTCAAATAAGTT
7108359 TTTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.38
Consensus pattern (27 bp):
TAATAAAAAATCTTTTCAAATAAGTTG
Found at i:7112516 original size:10 final size:10
Alignment explanation
Indices: 7112484--7112548 Score: 55
Period size: 9 Copynumber: 6.7 Consensus size: 10
7112474 CATTCATCCC
*
7112484 AAAAACCCA-
1 AAAAACCTAG
* *
7112493 AAAAACCCAT
1 AAAAACCTAG
7112503 AAAAACCTAG
1 AAAAACCTAG
*
7112513 AAAAAAACTAG
1 -AAAAACCTAG
7112524 -AAAACCTAG
1 AAAAACCTAG
*
7112533 AAAAACC-AA
1 AAAAACCTAG
7112542 AAAAACC
1 AAAAACC
7112549 CCAAAAGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
9 25 0.52
10 14 0.29
11 9 0.19
ACGTcount: A:0.66, C:0.23, G:0.05, T:0.06
Consensus pattern (10 bp):
AAAAACCTAG
Found at i:7113074 original size:3 final size:3
Alignment explanation
Indices: 7113062--7113138 Score: 109
Period size: 3 Copynumber: 25.7 Consensus size: 3
7113052 AATATAATAA
* * *
7113062 TAG TAA TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAC TAG TAC
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
* *
7113110 TAG TAG TAG TAA TAA TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
7113139 ATATAGTTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:7113881 original size:115 final size:116
Alignment explanation
Indices: 7113440--7113874 Score: 360
Period size: 115 Copynumber: 3.8 Consensus size: 116
7113430 ACCACAATTG
* ** * * *
7113440 AGTCGAGGTCAAAGATGAATGATCAGGATGAAACCACCAGTCAAGAAAATGATCTAGACTAAGTC
1 AGTCGAGGTCAAAGATGAATGATCAGAACAAAACCACGAGTCAAAAAAATGATCTAGACTGAGTC
* * * **
7113505 G-AGATTGGATGACCAGGACAAAATCACAAGTCTAAAAGTGATCAAGATCA
66 GAAGATTGAATGACTAGGACAAAATCATAAGTCTAAAAGCAATCAAGATCA
* * * * * ** *
7113555 AGTTGAGGTCAAAGATGAATGATTAAAACAGAATCGTGAGTCAAAAAAATGATCTAAACTGAG-C
1 AGTCGAGGTCAAAGATGAATGATCAGAACAAAACCACGAGTCAAAAAAATGATCTAGACTGAGTC
* * ** * * * *
7113619 CAAGATTGAATGACTGGGATGAAACCATAAGTCTGAAAGCAATCAGGATTA
66 GAAGATTGAATGACTAGGACAAAATCATAAGTCTAAAAGCAATCAAGATCA
** * * ** * * *
7113670 AGTTAAGGTTAAAGATGAATGACTAAG-ATGAAACCACAAGTCAAAAAAATGATCTGGATTGAGT
1 AGTCGAGGTCAAAGATGAATGA-TCAGAACAAAACCACGAGTCAAAAAAATGATCTAGACTGAGT
* * * * * * * * *
7113734 C-AAGATTAAATGA-TCGAGATAAAATTATGAGTTTAAAAACAATTAAGATCG
65 CGAAGATTGAATGACTAG-GACAAAATCATAAGTCTAAAAGCAATCAAGATCA
* * * * *
7113785 AGTCGAGGTTAAAGATGAATGATCAGAACAAAATCATGAGTTAAGAAAATGATCTAGACTGAGTC
1 AGTCGAGGTCAAAGATGAATGATCAGAACAAAACCACGAGTCAAAAAAATGATCTAGACTGAGTC
7113850 GAA-ATTGAATGACTAGGACAAAATC
66 GAAGATTGAATGACTAGGACAAAATC
7113875 GTGAGTTGAA
Statistics
Matches: 243, Mismatches: 70, Indels: 14
0.74 0.21 0.04
Matches are distributed among these distances:
114 6 0.02
115 230 0.95
116 7 0.03
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (116 bp):
AGTCGAGGTCAAAGATGAATGATCAGAACAAAACCACGAGTCAAAAAAATGATCTAGACTGAGTC
GAAGATTGAATGACTAGGACAAAATCATAAGTCTAAAAGCAATCAAGATCA
Found at i:7113966 original size:93 final size:92
Alignment explanation
Indices: 7113795--7113972 Score: 252
Period size: 93 Copynumber: 1.9 Consensus size: 92
7113785 AGTCGAGGTT
*
7113795 AAAGATGAATGATCAGAACAAAATCATGAGTTAAGAAAATGATCTAGACTGAGTCGAAATTGAAT
1 AAAGATGAATGATCAGAACAAAATCATGAGTTAAGAAAATAATCTAGACTGAGTCGAAATTGAAT
*
7113860 GACTAGGACAAAATCGTGAGTTGAAGTC
66 GACGAGGACAAAAT-GTGAGTTGAAGTC
* * * *
7113888 AAAGATGAATGAT-TGAGATAAAATCATGAGTTGAGAAAATAATCTAGACTGAGTCGAGATTGAA
1 AAAGATGAATGATCAGA-ACAAAATCATGAGTTAAGAAAATAATCTAGACTGAGTCGAAATTGAA
*
7113952 TGACCGA-GATAAAATGTGAGT
65 TGA-CGAGGACAAAATGTGAGT
7113973 CTAAAAGTGA
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
92 8 0.11
93 66 0.87
94 2 0.03
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.24
Consensus pattern (92 bp):
AAAGATGAATGATCAGAACAAAATCATGAGTTAAGAAAATAATCTAGACTGAGTCGAAATTGAAT
GACGAGGACAAAATGTGAGTTGAAGTC
Found at i:7114181 original size:60 final size:60
Alignment explanation
Indices: 7114057--7114188 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 60
7114047 AGACTGAGTC
* ** * *
7114057 AAGATCAAATGATCGAGATGAAATCGTGAGTCTAGAAGTGACTAGGACTGAGTCAAAGTCG
1 AAGAT-AAATGATCGAGATAAAATCAAGAGTCTAGAAGTGACTAGAACTGAGTCAAAGTAG
* * * *
7114118 AAGATGAATGATCGAGATAAAATCAAGAGT-TTGAAAGTGACTAGAACCT-AGTCGAGGTAG
1 AAGATAAATGATCGAGATAAAATCAAGAGTCTAG-AAGTGACTAGAA-CTGAGTCAAAGTAG
7114178 AAGATAAATGA
1 AAGATAAATGA
7114189 CCAAAATGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
59 2 0.03
60 50 0.85
61 7 0.12
ACGTcount: A:0.42, C:0.11, G:0.27, T:0.21
Consensus pattern (60 bp):
AAGATAAATGATCGAGATAAAATCAAGAGTCTAGAAGTGACTAGAACTGAGTCAAAGTAG
Found at i:7116043 original size:11 final size:11
Alignment explanation
Indices: 7116018--7116065 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
7116008 TTTTTTCCTA
7116018 TTTTTATTT-T
1 TTTTTATTTAT
*
7116028 ATTTTATTTAT
1 TTTTTATTTAT
*
7116039 TTTTTAATTTGT
1 TTTTT-ATTTAT
*
7116051 TTTTTAGTTAT
1 TTTTTATTTAT
7116062 TTTT
1 TTTT
7116066 GTGTTATTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 8 0.26
11 13 0.42
12 10 0.32
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (11 bp):
TTTTTATTTAT
Found at i:7116237 original size:46 final size:47
Alignment explanation
Indices: 7116165--7116264 Score: 116
Period size: 46 Copynumber: 2.1 Consensus size: 47
7116155 AAATATATTT
* * * * *
7116165 TTTTCAAATAAGTCTTTTTTTAAAAAAATATA-ATAATAAAA-AAATC
1 TTTTCAAATAAGTC-TTTTTCAAAAAAAAAAACAAAAAAAAAGAAATC
7116211 TTTTCAAATAAGT-TTTTTCAAGAAAAAAAAACAAAAAAAAAGAAATC
1 TTTTCAAATAAGTCTTTTTCAA-AAAAAAAAACAAAAAAAAAGAAATC
7116258 TTTTCAA
1 TTTTCAA
7116265 GTAAATTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
44 7 0.15
45 7 0.15
46 20 0.43
47 12 0.26
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (47 bp):
TTTTCAAATAAGTCTTTTTCAAAAAAAAAAACAAAAAAAAAGAAATC
Found at i:7116239 original size:47 final size:46
Alignment explanation
Indices: 7116165--7116264 Score: 114
Period size: 47 Copynumber: 2.2 Consensus size: 46
7116155 AAATATATTT
** * * *
7116165 TTTTCAAATAAGTCTTTTTTTAAAAAAATATAATAATAAAA-AAATC
1 TTTTCAAATAAGTCTTTTTAGAAAAAAAAACAA-AAAAAAAGAAATC
7116211 TTTTCAAATAAGT-TTTTTCAAGAAAAAAAAACAAAAAAAAAGAAATC
1 TTTTCAAATAAGTCTTTTT--AGAAAAAAAAACAAAAAAAAAGAAATC
7116258 TTTTCAA
1 TTTTCAA
7116265 GTAAATTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
45 5 0.11
46 19 0.41
47 22 0.48
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (46 bp):
TTTTCAAATAAGTCTTTTTAGAAAAAAAAACAAAAAAAAAGAAATC
Found at i:7117706 original size:34 final size:34
Alignment explanation
Indices: 7117667--7117736 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
7117657 TCTCATCACC
*
7117667 ATTTTCTTAAAAGATGAAGAAAGTTATCAAACGT
1 ATTTTCTTAAAAGATAAAGAAAGTTATCAAACGT
*
7117701 ATTTTCTTAAAAGATAAAGAAAGTTATCAAATGT
1 ATTTTCTTAAAAGATAAAGAAAGTTATCAAACGT
7117735 AT
1 AT
7117737 GGCCTTCATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (34 bp):
ATTTTCTTAAAAGATAAAGAAAGTTATCAAACGT
Found at i:7117799 original size:41 final size:41
Alignment explanation
Indices: 7117739--7117840 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 41
7117729 AAATGTATGG
*
7117739 CCTTCATACATAAACAAATAGTATGAAACAAGTACACATGA
1 CCTTCATACATAAACAAATAATATGAAACAAGTACACATGA
* * * *
7117780 CCTTCATGCATAAATAAATAATATGAAACAAGTATACATGG
1 CCTTCATACATAAACAAATAATATGAAACAAGTACACATGA
* *
7117821 TCTTCATACGTAAACAAATA
1 CCTTCATACATAAACAAATA
7117841 GACTATCTTG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.47, C:0.18, G:0.10, T:0.25
Consensus pattern (41 bp):
CCTTCATACATAAACAAATAATATGAAACAAGTACACATGA
Found at i:7126361 original size:29 final size:28
Alignment explanation
Indices: 7126322--7126380 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
7126312 GATTAATATA
* *
7126322 TTTATAATTTAAATATTATATTAAAAATT
1 TTTAAAATTTAAATA-CATATTAAAAATT
* *
7126351 TTTAAAATTTAGATACATATTAAATATT
1 TTTAAAATTTAAATACATATTAAAAATT
7126379 TT
1 TT
7126381 ATTATAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (28 bp):
TTTAAAATTTAAATACATATTAAAAATT
Found at i:7126380 original size:28 final size:29
Alignment explanation
Indices: 7126301--7126380 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
7126291 ATTAAATGTG
* *
7126301 AATATCATATTGATTAATATATTTATAATTTA
1 AATATCATATT-A--AATATTTTTAAAATTTA
* *
7126333 AATATTATATTAAAAATTTTTAAAATTTA
1 AATATCATATTAAATATTTTTAAAATTTA
*
7126362 GATA-CATATTAAATATTTT
1 AATATCATATTAAATATTTT
7126381 ATTATAATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
28 13 0.32
29 17 0.41
31 1 0.02
32 10 0.24
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (29 bp):
AATATCATATTAAATATTTTTAAAATTTA
Found at i:7127076 original size:20 final size:18
Alignment explanation
Indices: 7127027--7127078 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
7127017 TATTTTGGAA
*
7127027 ATATTAAAAATACTAAAT
1 ATATTAAAAATATTAAAT
* *
7127045 ATTTTTAAAATATTAAGAT
1 ATATTAAAAATATTAA-AT
7127064 ATGATTAAAAATATT
1 AT-ATTAAAAATATT
7127079 CATATTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 13 0.48
19 4 0.15
20 10 0.37
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (18 bp):
ATATTAAAAATATTAAAT
Found at i:7127144 original size:44 final size:43
Alignment explanation
Indices: 7127096--7127187 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 43
7127086 TTAACATAGT
*
7127096 AATATTGTTATACTA-ATTAA-ATAATATTTATTATTAAAATACAA
1 AATATTGTTA-ACTATATTAATAT-ATATTTAATATTAAAATA-AA
* *
7127140 AATATTTTTAACTATATTAATATTTATTTAATATTAAAATAAA
1 AATATTGTTAACTATATTAATATATATTTAATATTAAAATAAA
7127183 AATAT
1 AATAT
7127188 AATCCTACTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
43 11 0.26
44 30 0.70
45 2 0.05
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (43 bp):
AATATTGTTAACTATATTAATATATATTTAATATTAAAATAAA
Found at i:7127508 original size:46 final size:48
Alignment explanation
Indices: 7127443--7127534 Score: 134
Period size: 46 Copynumber: 2.0 Consensus size: 48
7127433 AATCATCAAG
* * * *
7127443 TTATATTTTGTTGATAATTTATTTTT-TTTAAATAAATATAAAAATAA
1 TTATATTTTGTTGACAATTTATTTTTGGTCAAACAAATATAAAAATAA
7127490 TTAT-TTTTGTTGACAATTTATTTTTGGTCAAACAAATATAAAAAT
1 TTATATTTTGTTGACAATTTATTTTTGGTCAAACAAATATAAAAAT
7127535 TTGCAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 20 0.50
47 20 0.50
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (48 bp):
TTATATTTTGTTGACAATTTATTTTTGGTCAAACAAATATAAAAATAA
Found at i:7127823 original size:1 final size:1
Alignment explanation
Indices: 7127819--7127849 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
7127809 CCTTTTTGTT
7127819 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7127850 CTAGATTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7146008 original size:11 final size:10
Alignment explanation
Indices: 7145982--7146007 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7145972 TCAGGGAAAG
7145982 AAAAAATAAA
1 AAAAAATAAA
7145992 AAAAAATAAA
1 AAAAAATAAA
7146002 AAAAAA
1 AAAAAA
7146008 ACCCCGAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:7165959 original size:13 final size:12
Alignment explanation
Indices: 7165927--7165952 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7165917 TAAATTTTAA
7165927 TTAAATTAATTT
1 TTAAATTAATTT
7165939 TTAAATTAATTT
1 TTAAATTAATTT
7165951 TT
1 TT
7165953 TGAATTATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTAAATTAATTT
Found at i:7166418 original size:12 final size:13
Alignment explanation
Indices: 7166374--7166419 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
7166364 TTTATAATAA
7166374 AATAAAT-TAAAT
1 AATAAATATAAAT
7166386 AATTAAATAATATAAT
1 AA-TAAAT-ATA-AAT
7166402 AATAAATATAAAT
1 AATAAATATAAAT
7166415 -ATAAA
1 AATAAA
7166420 ATACTCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 7 0.23
13 8 0.27
14 3 0.10
15 7 0.23
16 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AATAAATATAAAT
Found at i:7166506 original size:17 final size:16
Alignment explanation
Indices: 7166479--7166513 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7166469 CTTGTTTTAG
7166479 ATATTTTTACAAAAAA
1 ATATTTTTACAAAAAA
*
7166495 ATATTATTTACAACAAA
1 ATATT-TTTACAAAAAA
7166512 AT
1 AT
7166514 CATACATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATTTTTACAAAAAA
Found at i:7171674 original size:20 final size:20
Alignment explanation
Indices: 7171635--7171674 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7171625 AAAAATATAT
* *
7171635 TTTTTAAATAAAAAATTAAA
1 TTTTAAAATAAAAAAGTAAA
*
7171655 TTTTAAAATAATAAAGTAAA
1 TTTTAAAATAAAAAAGTAAA
7171675 GATTTTGATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TTTTAAAATAAAAAAGTAAA
Found at i:7172724 original size:5 final size:6
Alignment explanation
Indices: 7172707--7172742 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
7172697 TTTTTGTTTT
7172707 CAAAAA GCAAAAA CAAAAA C-AAAA CAAAAA CAAAAA
1 CAAAAA -CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA
7172743 AATTGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.18
6 17 0.61
7 6 0.21
ACGTcount: A:0.81, C:0.17, G:0.03, T:0.00
Consensus pattern (6 bp):
CAAAAA
Found at i:7172732 original size:11 final size:11
Alignment explanation
Indices: 7172716--7172741 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7172706 TCAAAAAGCA
7172716 AAAACAAAAAC
1 AAAACAAAAAC
7172727 AAAACAAAAAC
1 AAAACAAAAAC
7172738 AAAA
1 AAAA
7172742 AAATTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAC
Found at i:7172736 original size:17 final size:18
Alignment explanation
Indices: 7172709--7172742 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7172699 TTTGTTTTCA
7172709 AAAAGCAAAAACAAAAAC
1 AAAAGCAAAAACAAAAAC
7172727 AAAA-CAAAAACAAAAA
1 AAAAGCAAAAACAAAAA
7172743 AATTGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.82, C:0.15, G:0.03, T:0.00
Consensus pattern (18 bp):
AAAAGCAAAAACAAAAAC
Found at i:7176835 original size:12 final size:12
Alignment explanation
Indices: 7176820--7176860 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
7176810 ATTTCAATTT
7176820 TTTTCATATATA
1 TTTTCATATATA
*
7176832 TTTTTATATATA
1 TTTTCATATATA
*
7176844 TTTT-AAATAT-
1 TTTTCATATATA
7176854 TTTTCAT
1 TTTTCAT
7176861 GCCAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
10 4 0.16
11 6 0.24
12 15 0.60
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTTCATATATA
Found at i:7178106 original size:3 final size:3
Alignment explanation
Indices: 7178098--7178139 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7178088 TTTGTTTATG
7178098 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7178140 TGAACCTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7178399 original size:12 final size:12
Alignment explanation
Indices: 7178382--7178407 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7178372 GTAATAGTTA
7178382 TAATCTTTGCTT
1 TAATCTTTGCTT
7178394 TAATCTTTGCTT
1 TAATCTTTGCTT
7178406 TA
1 TA
7178408 GTAGATAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.08, T:0.58
Consensus pattern (12 bp):
TAATCTTTGCTT
Found at i:7184613 original size:24 final size:24
Alignment explanation
Indices: 7184585--7184642 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
7184575 ATTATATGCT
*
7184585 AAAAATAAATGTTCAATCAAAT-A
1 AAAAATAAATGTCCAATCAAATCA
7184608 ACAAAATAAATGTCCAATCAAATCA
1 A-AAAATAAATGTCCAATCAAATCA
7184633 AAAAATAAAT
1 AAAAATAAAT
7184643 AATTAAAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 1 0.03
24 29 0.91
25 2 0.06
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.22
Consensus pattern (24 bp):
AAAAATAAATGTCCAATCAAATCA
Found at i:7185091 original size:170 final size:170
Alignment explanation
Indices: 7184809--7185142 Score: 652
Period size: 170 Copynumber: 2.0 Consensus size: 170
7184799 TATGTATTCA
7184809 TATATATTCATATTGCATTCAAATAATGTATTCACTTATTTTTAAATTTTAGTTTAAGGACTCAA
1 TATATATTCATATTGCATTCAAATAATGTATTCACTTATTTTTAAATTTTAGTTTAAGGACTCAA
7184874 GTGAAAAAATTAAAATAAGAAAATTTTAGGTTTGGATAATGTCATCATTTGATGAAACTCCTTAA
66 GTGAAAAAATTAAAATAAGAAAATTTTAGGTTTGGATAATGTCATCATTTGATGAAACTCCTTAA
7184939 AAAATCTTTGTAATTGGATAAAGTCAATCTTATATGTACT
131 AAAATCTTTGTAATTGGATAAAGTCAATCTTATATGTACT
7184979 TATATATTCATATTGCATTCAAATAAT-TATTCACTTATTTTTAAATTTTAGTTTAAGGACTCAA
1 TATATATTCATATTGCATTCAAATAATGTATTCACTTATTTTTAAATTTTAGTTTAAGGACTCAA
7185043 GTGAAAAATATTAAAATAAGAAAATTTTAGGTTTGGATAATGTCATCATTTGATGAAACTCCTTA
66 GTGAAAAA-ATTAAAATAAGAAAATTTTAGGTTTGGATAATGTCATCATTTGATGAAACTCCTTA
7185108 AAAAATCTTTGTAATTGGATAAAGTCAATCTTATA
130 AAAAATCTTTGTAATTGGATAAAGTCAATCTTATA
7185143 AGAAAAAATT
Statistics
Matches: 163, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
169 45 0.28
170 118 0.72
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.40
Consensus pattern (170 bp):
TATATATTCATATTGCATTCAAATAATGTATTCACTTATTTTTAAATTTTAGTTTAAGGACTCAA
GTGAAAAAATTAAAATAAGAAAATTTTAGGTTTGGATAATGTCATCATTTGATGAAACTCCTTAA
AAAATCTTTGTAATTGGATAAAGTCAATCTTATATGTACT
Found at i:7187845 original size:72 final size:73
Alignment explanation
Indices: 7187713--7187855 Score: 209
Period size: 72 Copynumber: 2.0 Consensus size: 73
7187703 TTTTTTTAAG
* * *
7187713 AAAATATTTATCATTCATTCGTAGAAAGAAAATCAAAATCTATTTGTATGAAGGGTACAATAAAG
1 AAAATATTCATCATTCATTCATAGAAAG-AAATCAAAATCTATCTGTATGAAGGGTACAATAAAG
7187778 CTTGGACAA
65 CTTGGACAA
* *
7187787 AAAATATTCATCATTCATTCATGGAAAG-AATCATAATCTATCTGTAT-AAGGGGTACAATAAAG
1 AAAATATTCATCATTCATTCATAGAAAGAAATCAAAATCTATCTGTATGAA-GGGTACAATAAAG
7187850 CTTGGA
65 CTTGGA
7187856 TGCTTACCTA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
71 2 0.03
72 36 0.57
74 25 0.40
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (73 bp):
AAAATATTCATCATTCATTCATAGAAAGAAATCAAAATCTATCTGTATGAAGGGTACAATAAAGC
TTGGACAA
Found at i:7188540 original size:3 final size:3
Alignment explanation
Indices: 7188532--7188579 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
7188522 AGCTTTATGC
7188532 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7188580 TGAGAAGCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7193246 original size:33 final size:32
Alignment explanation
Indices: 7193204--7193272 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
7193194 TTAGTGACGT
* * * *
7193204 TTAGCTGTTTGTATGTGGAAAATGTCGCTATA
1 TTAGCTGTTTGAATCTAGAAAATGCCGCTATA
*
7193236 TTAGCATGTTTGAATCTAGAAAATGCCGCTGTA
1 TTAGC-TGTTTGAATCTAGAAAATGCCGCTATA
7193269 TTAG
1 TTAG
7193273 TGGCATTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
32 5 0.16
33 26 0.84
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCTGTTTGAATCTAGAAAATGCCGCTATA
Found at i:7193316 original size:34 final size:34
Alignment explanation
Indices: 7193210--7193318 Score: 103
Period size: 34 Copynumber: 3.2 Consensus size: 34
7193200 ACGTTTAGCT
* * *
7193210 GTTTGTATGTGGAAAATGTCGCTATATTAGCA-T
1 GTTTGTATATAGAAAATGTCGCTATATTAGCAGC
* * * * **
7193243 GTTTGAATCTAGAAAATGCCGCTGTATTAGTGGC
1 GTTTGTATATAGAAAATGTCGCTATATTAGCAGC
* * *
7193277 ATTTGTATATAGAAAATGTCACTATTTTAGCAGC
1 GTTTGTATATAGAAAATGTCGCTATATTAGCAGC
7193311 GTTTGTAT
1 GTTTGTAT
7193319 CTTTGAGATG
Statistics
Matches: 57, Mismatches: 18, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
33 25 0.44
34 32 0.56
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (34 bp):
GTTTGTATATAGAAAATGTCGCTATATTAGCAGC
Found at i:7197980 original size:187 final size:185
Alignment explanation
Indices: 7197754--7198393 Score: 708
Period size: 187 Copynumber: 3.4 Consensus size: 185
7197744 GAATTTATTA
* ** * * **
7197754 TTCTAGTGCAAAACGTCTTCAATATTCCACTATTCAAATTTTAAAATGGTTAGTGAAGGCATTTA
1 TTCTAGTGAAAAACACCTTCAATATTCCAGTACTCAAATTTTAAAACAGTTAGTGAAGGCATTTA
* * * * *
7197819 CTCTAGAAAAATGCCTTCACTAATTCTTTTTAATTTATGTATATAATTATTGAAGGTATTTTTTG
66 TTCCAGAAAAATACCTTCACTAATTCTTTTTAATTTATGTACATAATTATTGAAGGAATTTTTTG
* *
7197884 AGAACAAACGCCTTCAATAATTTCATTTTAAAAATTTTTAGGATTATTAAATGTGTC
131 ATAACAAACGCCTTCAATAATTTC-TTTTAAAAATTTTTGGGATTATTAAA-GTGTC
* * * * * * * *
7197941 TTCTAGTGAAAAATATCTTCAATATTTCAGTGCTCAAATTTTAAGACGGTTGGTGAAGGCGTTTA
1 TTCTAGTGAAAAACACCTTCAATATTCCAGTACTCAAATTTTAAAACAGTTAGTGAAGGCATTTA
* * * * *
7198006 TTCCAAAAAAACACCTTCAATAATTCCTTTTAAATTT-TGTACATAATTATTAAAGGAATTTTTT
66 TTCCAGAAAAATACCTTCACTAATT-CTTTTTAATTTATGTACATAATTATTGAAGGAATTTTTT
* *
7198070 GATAACAAATGCCTTCAATAATTTTCTTTTAAAAATTTTTGGGATTATTAAAGGCGTC
130 GATAACAAACGCCTTCAATAA-TTTCTTTTAAAAATTTTTGGGATTATTAAA-GTGTC
* ** *
7198128 TTCCAGTGAAAAATGCCTTCAATATTCCATTACTCAAATTTTAAAACAGTTAGTGAAGGCATTTA
1 TTCTAGTGAAAAACACCTTCAATATTCCAGTACTCAAATTTTAAAACAGTTAGTGAAGGCATTTA
* * ** ** *
7198193 TTCTAGAAAAATACCTTTACCGATTCCATTTAATTTATGTACATAATTATTGAAGGCATTTTTTT
66 TTCCAGAAAAATACCTTCACTAATTCTTTTTAATTTATGTACATAATTATTGAAGG-AATTTTTT
* * * * *
7198258 GATAACAAGCGTCTTCAATAATTT-TGTTAAAAAAAATATTTGGGATTATTAAAGTCATC
130 GATAACAAACGCCTTCAATAATTTCT-TT--TAAAAATTTTTGGGATTATTAAAGT-GTC
* * * * * *
7198317 TTCTAGAGAAAAACACCTTCAATATTTCAGTACTCAAATTTTAAGATAGTTAGTGAAAGCGTTTA
1 TTCTAGTGAAAAACACCTTCAATATTCCAGTACTCAAATTTTAAAACAGTTAGTGAAGGCATTTA
*
7198382 TTCCATAAAAAT
66 TTCCAGAAAAAT
7198394 GTTTTCACTA
Statistics
Matches: 378, Mismatches: 67, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
186 9 0.02
187 241 0.64
188 40 0.11
189 88 0.23
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (185 bp):
TTCTAGTGAAAAACACCTTCAATATTCCAGTACTCAAATTTTAAAACAGTTAGTGAAGGCATTTA
TTCCAGAAAAATACCTTCACTAATTCTTTTTAATTTATGTACATAATTATTGAAGGAATTTTTTG
ATAACAAACGCCTTCAATAATTTCTTTTAAAAATTTTTGGGATTATTAAAGTGTC
Found at i:7199162 original size:13 final size:12
Alignment explanation
Indices: 7199132--7199180 Score: 62
Period size: 12 Copynumber: 4.0 Consensus size: 12
7199122 GAATCATATA
7199132 CTGAATGGTTTG
1 CTGAATGGTTTG
*
7199144 CTGAATGGTGTTT
1 CTGAATGGT-TTG
7199157 CTGAATGGTTTG
1 CTGAATGGTTTG
* *
7199169 CTAAAGGGTTTG
1 CTGAATGGTTTG
7199181 TCTAAGCACA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
12 21 0.66
13 11 0.34
ACGTcount: A:0.18, C:0.08, G:0.33, T:0.41
Consensus pattern (12 bp):
CTGAATGGTTTG
Found at i:7199203 original size:37 final size:37
Alignment explanation
Indices: 7199157--7199242 Score: 93
Period size: 37 Copynumber: 2.3 Consensus size: 37
7199147 AATGGTGTTT
* * *
7199157 CTGAATGGTTTGCTAAAGGGTTTGTCT-AAGCACATTG
1 CTGATTGGTTTGCTAAAGAGTATGTCTGAA-CACATTG
* * * *
7199194 CTGATTGGTTTACTGAATAGTATGTTTGAACACATTG
1 CTGATTGGTTTGCTAAAGAGTATGTCTGAACACATTG
7199231 CTGATTGGTTTG
1 CTGATTGGTTTG
7199243 TTGAATGGTG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
37 38 0.95
38 2 0.05
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.40
Consensus pattern (37 bp):
CTGATTGGTTTGCTAAAGAGTATGTCTGAACACATTG
Found at i:7200348 original size:3 final size:3
Alignment explanation
Indices: 7200340--7200400 Score: 65
Period size: 3 Copynumber: 21.0 Consensus size: 3
7200330 TTTTTCTTTT
* * *
7200340 TTA TTA TTA TTA -TA TAA TT- TTGT TTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA
7200384 -TA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
7200401 ATCTTTAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
2 6 0.12
3 41 0.84
4 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7200365 original size:23 final size:23
Alignment explanation
Indices: 7200339--7200402 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
7200329 ATTTTTCTTT
*
7200339 TTTATTATTATTATATAATT-TTG
1 TTTATTATTATTAT-TAATTATTA
*
7200362 TTTATTACTATTATT-ATTATTA
1 TTTATTATTATTATTAATTATTA
7200384 TATTATTATTATTATTAAT
1 T-TTATTATTATTATTAAT
7200403 CTTTAAAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 3 0.09
22 4 0.11
23 26 0.74
24 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTATTATTATTATTAATTATTA
Found at i:7200395 original size:29 final size:29
Alignment explanation
Indices: 7200341--7200397 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
7200331 TTTTCTTTTT
*
7200341 TATTATTATTATATAATTTTGTTTATTAC
1 TATTATTATTATATAATTTTGATTATTAC
7200370 TATTATTATTAT-TATATTATT-ATTATTA
1 TATTATTATTATATA-ATT-TTGATTATTA
7200398 TTAATCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 2 0.08
29 21 0.84
30 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (29 bp):
TATTATTATTATATAATTTTGATTATTAC
Found at i:7200399 original size:32 final size:32
Alignment explanation
Indices: 7200340--7200400 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
7200330 TTTTTCTTTT
*
7200340 TTATTATTATTATATAATTTTGTTTATTACTA
1 TTATTATTATTATATAATTTTGATTATTACTA
*
7200372 TTATTATTATTATATTATTATT-ATTATTA
1 TTATTATTATTATATAATT-TTGATTATTA
7200401 ATCTTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 24 0.92
33 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (32 bp):
TTATTATTATTATATAATTTTGATTATTACTA
Found at i:7201258 original size:13 final size:13
Alignment explanation
Indices: 7201240--7201269 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7201230 TCGTAGGTTT
*
7201240 TTTTTTCTTTTTA
1 TTTTTTATTTTTA
7201253 TTTTTTATTTTTA
1 TTTTTTATTTTTA
7201266 TTTT
1 TTTT
7201270 GATTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:7201303 original size:12 final size:11
Alignment explanation
Indices: 7201259--7201308 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
7201249 TTTATTTTTT
7201259 ATTTTTATTTTG
1 ATTTTTA-TTTG
7201271 A-TTTTATTT-
1 ATTTTTATTTG
7201280 ATTTTGTA-TTG
1 ATTTT-TATTTG
7201291 ATTTTTATGTTG
1 ATTTTTAT-TTG
7201303 ATTTTT
1 ATTTTT
7201309 TTATTTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
9 1 0.03
10 10 0.30
11 12 0.36
12 10 0.30
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (11 bp):
ATTTTTATTTG
Found at i:7201304 original size:32 final size:31
Alignment explanation
Indices: 7201259--7201320 Score: 97
Period size: 32 Copynumber: 2.0 Consensus size: 31
7201249 TTTATTTTTT
*
7201259 ATTTTTATTTTGATTTTATTTATTTTGTATTG
1 ATTTTTATGTTGATTTT-TTTATTTTGTATTG
*
7201291 ATTTTTATGTTGATTTTTTTATTTTTTATT
1 ATTTTTATGTTGATTTTTTTATTTTGTATT
7201321 CATGATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (31 bp):
ATTTTTATGTTGATTTTTTTATTTTGTATTG
Found at i:7201580 original size:13 final size:14
Alignment explanation
Indices: 7201564--7201592 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7201554 AAACAAATTG
7201564 TTTAAATG-AATCT
1 TTTAAATGCAATCT
7201577 TTTAAATGCAATCT
1 TTTAAATGCAATCT
7201591 TT
1 TT
7201593 AGAGAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTAAATGCAATCT
Found at i:7213825 original size:38 final size:39
Alignment explanation
Indices: 7213774--7213901 Score: 168
Period size: 40 Copynumber: 3.3 Consensus size: 39
7213764 GATTTTCAAC
*
7213774 ATTTAAAGTTTGTTGCCTTTGGTGAGAGGA-CTTTTTGA
1 ATTTAAAGTTTGTTGCCTTTGGTGAGAGGAGCTTTTTAA
* * *
7213812 ATTTAAAGTTTGTTGCCTCTGATGAGAGGAGCTTTTCAA
1 ATTTAAAGTTTGTTGCCTTTGGTGAGAGGAGCTTTTTAA
* * * *
7213851 CATTTAAAGTTCGTTGCCTTTAGTTAGATGAGCTTTTTAA
1 -ATTTAAAGTTTGTTGCCTTTGGTGAGAGGAGCTTTTTAA
7213891 ATTTAAAGTTT
1 ATTTAAAGTTT
7213902 TATAGCCTCT
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
38 28 0.37
39 16 0.21
40 32 0.42
ACGTcount: A:0.25, C:0.10, G:0.21, T:0.44
Consensus pattern (39 bp):
ATTTAAAGTTTGTTGCCTTTGGTGAGAGGAGCTTTTTAA
Found at i:7213918 original size:40 final size:37
Alignment explanation
Indices: 7213774--7213934 Score: 126
Period size: 40 Copynumber: 4.1 Consensus size: 37
7213764 GATTTTCAAC
* * *
7213774 ATTTAAAGTTTGTTGCCTTTGGTGAGAGGA-CTTTTTGA
1 ATTTAAAGTTT-TTGCCTCT-GTTAGAGGAGCTTTTTAA
* *
7213812 ATTTAAAGTTTGTTGCCTCTGATGAGAGGAGCTTTTCAA
1 ATTTAAAGTTT-TTGCCTCTG-TTAGAGGAGCTTTTTAA
* * *
7213851 CATTTAAAGTTCGTTGCCTTTAGTTAGATGAGCTTTTTAA
1 -ATTTAAAGTT-TTTGCCTCT-GTTAGAGGAGCTTTTTAA
* * *
7213891 ATTTAAAGTTTTATAGCCTCTGTTTAGAGAAGCCTTTCAA
1 ATTTAAAGTTTT-T-GCCTCTG-TTAGAGGAGCTTTTTAA
7213931 ATTT
1 ATTT
7213935 TCTCTAAAAA
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 28 0.28
39 18 0.18
40 53 0.52
41 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (37 bp):
ATTTAAAGTTTTTGCCTCTGTTAGAGGAGCTTTTTAA
Done.