Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 41 of 121
Found at i:7215008 original size:13 final size:13
Alignment explanation
Indices: 7214976--7215016 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
7214966 ATTTCACAGG
*
7214976 TTTTC-CTTTTTC
1 TTTTCTCTTTTTA
7214988 TTTT-TCTTTTTA
1 TTTTCTCTTTTTA
*
7215000 TTTTCTCTTTTGA
1 TTTTCTCTTTTTA
7215013 TTTT
1 TTTT
7215017 GATTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTTCTCTTTTTA
Found at i:7215316 original size:13 final size:14
Alignment explanation
Indices: 7215298--7215326 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7215288 TAAAAAATTG
7215298 TTTAAATG-AATCT
1 TTTAAATGCAATCT
7215311 TTTAAATGCAATCT
1 TTTAAATGCAATCT
7215325 TT
1 TT
7215327 AGAGAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTAAATGCAATCT
Found at i:7218355 original size:35 final size:35
Alignment explanation
Indices: 7218309--7218378 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
7218299 ATATATAAAC
* *
7218309 CAAATATTTTCTGGGCATAAATATACAACTAACTT
1 CAAATATTTTCTAGGCATAAACATACAACTAACTT
* * *
7218344 CAAATGTTTTCTAGGCATAAACCTACAACTGACTT
1 CAAATATTTTCTAGGCATAAACATACAACTAACTT
7218379 GACATAACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (35 bp):
CAAATATTTTCTAGGCATAAACATACAACTAACTT
Found at i:7240466 original size:47 final size:46
Alignment explanation
Indices: 7240392--7240703 Score: 228
Period size: 47 Copynumber: 6.8 Consensus size: 46
7240382 TCATAAAAAT
* * *
7240392 GGGCATTTGTATTAGATAAGGATAAGCTAACATTTGAATCCTTATAA
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCAT-CTTATAA
* * * * * * *
7240439 GGGCATTTGCATTAGATGAGAACAAGCTTGCATTTACATTTGTGTAA
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCT-TATAA
* * * *
7240486 GGGCATTTGCATTAGATAAGGATAAGCCAGTATTTGCTTTCATATAA
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGC-ATCTTATAA
* * *
7240533 GGGAATTTGCATTAAATGAA-GACAAGCTTA-CATTTG-----TATAA
1 GGGCATTTGCATTAGAT-AAGGATAAGC-TAGCATTTGCATCTTATAA
* * **
7240574 GGTCATTTTCATTAGATGGGGATAAGCTAGCATTTGCATCCTTAT-A
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCAT-CTTATAA
* * * * *
7240620 GGGACAATTGCATTAAACAAGG-TCAAGCTTGCATTTGCATTTGTATAA
1 GGG-CATTTGCATTAGATAAGGAT-AAGCTAGCATTTGCATCT-TATAA
* *
7240668 AGGCATTTGCATTAGATTAGGATAAGCTAGCATTTG
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTG
7240704 TATCCTTGTA
Statistics
Matches: 200, Mismatches: 48, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
40 2 0.01
41 30 0.15
46 6 0.03
47 154 0.77
48 8 0.04
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.34
Consensus pattern (46 bp):
GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCTTATAA
Found at i:7240558 original size:94 final size:94
Alignment explanation
Indices: 7240392--7240710 Score: 350
Period size: 94 Copynumber: 3.5 Consensus size: 94
7240382 TCATAAAAAT
* * * * *
7240392 GGGCATTTGTATTAGATAAGGATAAGCTAACATTTGAATCCTTATAAGGGCATTTGCATTAGATG
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTTATAAGGGAATTTGCATTAAATG
*
7240457 -AGAACAAGCTTGCATTTACATTTGTGTAA
66 AAG-ACAAGCTTGCATTTACATTTGTATAA
* * * * *
7240486 GGGCATTTGCATTAGATAAGGATAAGCCAGTATTTGCTTTCATATAAGGGAATTTGCATTAAATG
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTTATAAGGGAATTTGCATTAAATG
7240551 AAGACAA----GC--TTACATTTGTATAA
66 AAGACAAGCTTGCATTTACATTTGTATAA
* * ** *
7240574 GGTCATTTTCATTAGATGGGGATAAGCTAGCATTTGCATCCTTAT-AGGGACAATTGCATTAAA-
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTTATAAGGGA-ATTTGCATTAAAT
* * *
7240637 CAAGGTCAAGCTTGCATTTGCATTTGTATAA
65 GAA-GACAAGCTTGCATTTACATTTGTATAA
* * *
7240668 AGGCATTTGCATTAGATTAGGATAAGCTAGCATTTGTATCCTT
1 GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTT
7240711 GTAGAGGCAT
Statistics
Matches: 186, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
87 7 0.04
88 64 0.34
90 2 0.01
92 2 0.01
94 109 0.59
95 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (94 bp):
GGGCATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTTATAAGGGAATTTGCATTAAATG
AAGACAAGCTTGCATTTACATTTGTATAA
Found at i:7240719 original size:47 final size:47
Alignment explanation
Indices: 7240577--7240722 Score: 129
Period size: 47 Copynumber: 3.1 Consensus size: 47
7240567 TGTATAAGGT
* ** *
7240577 CATTTTCATTAGATGGGGATAAGCTAGCATTTGCATCCTTATAG-GG
1 CATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTTGTAGAGG
* * * * *
7240623 ACAATTGCATTAAACAAGG-TCAAGCTTGCATTTGCAT--TTGTATAAAGG
1 -CATTTGCATTAGATAAGGAT-AAGCTAGCATTTGCATCCTTG--TAGAGG
* *
7240671 CATTTGCATTAGATTAGGATAAGCTAGCATTTGTATCCTTGTAGAGG
1 CATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTTGTAGAGG
7240718 CATTT
1 CATTT
7240723 ACTTTGGTTG
Statistics
Matches: 76, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
45 2 0.03
46 1 0.01
47 67 0.88
48 3 0.04
49 3 0.04
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (47 bp):
CATTTGCATTAGATAAGGATAAGCTAGCATTTGCATCCTTGTAGAGG
Found at i:7241647 original size:33 final size:33
Alignment explanation
Indices: 7241568--7241647 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 33
7241558 TTCTTACCTA
* * * * *
7241568 AGCTCAATTTAGGTCATGTCATTTGTCGAGTTC
1 AGCTCAGTATAGGTCATGTAATTTGTCAACTTC
* * *
7241601 AGCTTAGTCTAGGTCATGTAATTTGTTAACTTC
1 AGCTCAGTATAGGTCATGTAATTTGTCAACTTC
*
7241634 ATCTCAGTATAGGT
1 AGCTCAGTATAGGT
7241648 TATATCATTT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (33 bp):
AGCTCAGTATAGGTCATGTAATTTGTCAACTTC
Found at i:7241958 original size:14 final size:15
Alignment explanation
Indices: 7241941--7241975 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7241931 AAAAACACAC
*
7241941 AAAAAA-AAACTAAT
1 AAAAAAGAAACAAAT
7241955 AAAAAAGAAACAAAT
1 AAAAAAGAAACAAAT
7241970 AAAAAA
1 AAAAAA
7241976 CTCTTTAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.83, C:0.06, G:0.03, T:0.09
Consensus pattern (15 bp):
AAAAAAGAAACAAAT
Found at i:7242229 original size:18 final size:19
Alignment explanation
Indices: 7242190--7242235 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
7242180 ATTTTTAGGA
*
7242190 AAAATGCAAGAAAAATAGC
1 AAAATTCAAGAAAAATAGC
7242209 AAAATTCAA-AAAAA-AGTC
1 AAAATTCAAGAAAAATAG-C
*
7242227 AAAAGTCAA
1 AAAATTCAA
7242236 CTTAAACTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 14 0.58
19 8 0.33
ACGTcount: A:0.65, C:0.11, G:0.11, T:0.13
Consensus pattern (19 bp):
AAAATTCAAGAAAAATAGC
Found at i:7245445 original size:79 final size:81
Alignment explanation
Indices: 7245353--7245511 Score: 198
Period size: 79 Copynumber: 2.0 Consensus size: 81
7245343 AAACCAATTG
* * * *
7245353 GATATGTGTTGTTTTGTTATTAATATCTTCATTGACTTTTTTCTT-ACATAATTTAT-TTTTAAA
1 GATATGTGTTGTTTTATCATTAATATCTTCATTGACTTTTTTCTTAACATAACTTATCTTTAAAA
*
7245416 AAGTAAAAAAAAAAAA
66 AAATAAAAAAAAAAAA
** * *
7245432 GATATG-GATTGTTTTATCATTTTTATCTTCATTGATTTTTTTTTTAACATAACTTATCTTTAAA
1 GATATGTG-TTGTTTTATCATTAATATCTTCATTGACTTTTTTCTTAACATAACTTATCTTTAAA
*
7245496 AAAATAAAAATAAAAA
65 AAAATAAAAAAAAAAA
7245512 TAAAAAACTA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 37 0.55
80 10 0.15
81 19 0.28
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (81 bp):
GATATGTGTTGTTTTATCATTAATATCTTCATTGACTTTTTTCTTAACATAACTTATCTTTAAAA
AAATAAAAAAAAAAAA
Found at i:7245573 original size:16 final size:16
Alignment explanation
Indices: 7245552--7245582 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7245542 TATCTAATAA
*
7245552 AAATAAAATTAAAAAT
1 AAATAAAATCAAAAAT
7245568 AAATAAAATCAAAAA
1 AAATAAAATCAAAAA
7245583 ATCAAAACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAATAAAATCAAAAAT
Found at i:7246799 original size:20 final size:20
Alignment explanation
Indices: 7246776--7246813 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7246766 AATTGATAAT
* *
7246776 TTAATAAGATTGAAATTACG
1 TTAATAAAATTAAAATTACG
7246796 TTAATAAAATTAAAATTA
1 TTAATAAAATTAAAATTA
7246814 ATAGTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.37
Consensus pattern (20 bp):
TTAATAAAATTAAAATTACG
Found at i:7252955 original size:15 final size:15
Alignment explanation
Indices: 7252935--7252965 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7252925 GGCCCAATGT
7252935 AGCTAATGTTATATG
1 AGCTAATGTTATATG
7252950 AGCTAATGTTATATG
1 AGCTAATGTTATATG
7252965 A
1 A
7252966 TTTTACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.39
Consensus pattern (15 bp):
AGCTAATGTTATATG
Found at i:7254669 original size:17 final size:17
Alignment explanation
Indices: 7254647--7254683 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7254637 TAGCATTGAG
* *
7254647 TTCTTGTTGAATTGATA
1 TTCTTGATGAATTGAAA
7254664 TTCTTGATGAATTGAAA
1 TTCTTGATGAATTGAAA
7254681 TTC
1 TTC
7254684 AAAATAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.08, G:0.16, T:0.49
Consensus pattern (17 bp):
TTCTTGATGAATTGAAA
Found at i:7258055 original size:15 final size:15
Alignment explanation
Indices: 7258031--7258112 Score: 78
Period size: 15 Copynumber: 5.3 Consensus size: 15
7258021 CTAATATTGA
*
7258031 ATTTCCAACTTCATG
1 ATTTCTAACTTCATG
*
7258046 ATTTCTAACTTCATTT
1 ATTTCTAACTTCA-TG
*
7258062 ATTT-TCAAGTTCATG
1 ATTTCT-AACTTCATG
7258077 ATTTCTAACTTCATTG
1 ATTTCTAACTTCA-TG
*
7258093 ATTT-TCAAGTTCATG
1 ATTTCT-AACTTCATG
7258108 ATTTC
1 ATTTC
7258113 CAAAAACAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
15 31 0.56
16 24 0.44
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49
Consensus pattern (15 bp):
ATTTCTAACTTCATG
Found at i:7258075 original size:31 final size:31
Alignment explanation
Indices: 7258026--7258112 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
7258016 ACAAACTAAT
* *
7258026 ATTGAATTTCCAACTTCATGATTTCTAACTTC
1 ATTG-ATTTTCAAGTTCATGATTTCTAACTTC
*
7258058 ATTTATTTTCAAGTTCATGATTTCTAACTTC
1 ATTGATTTTCAAGTTCATGATTTCTAACTTC
7258089 ATTGATTTTCAAGTTCATGATTTC
1 ATTGATTTTCAAGTTCATGATTTC
7258113 CAAAAACAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
31 48 0.94
32 3 0.06
ACGTcount: A:0.26, C:0.17, G:0.08, T:0.48
Consensus pattern (31 bp):
ATTGATTTTCAAGTTCATGATTTCTAACTTC
Found at i:7263369 original size:55 final size:55
Alignment explanation
Indices: 7263307--7263470 Score: 188
Period size: 55 Copynumber: 3.0 Consensus size: 55
7263297 TTTAAAAAAC
* * *
7263307 AAAAATAATTTCAAAAATTAGAGAAAAAAGCTAAAATATCAAAATTTCCTTAAAT
1 AAAAATAATTTCAAAAATTAGAGAAAAAAGTTGAAATATCAAATTTTCCTTAAAT
* * * * *
7263362 GAAAATAATTTCAAAATTTTA-AGAAAAAAATTGAAGTATC-AATTTATCTTTAAAT
1 AAAAATAATTTCAAAA-ATTAGAGAAAAAAGTTGAAATATCAAATTT-TCCTTAAAT
** * *
7263417 AAAAATAATTTTGAAACTTTGAGAAAAAAGTTGAAATATCAAATTTTCCTTAAA
1 AAAAATAATTTCAAAAATTAGAGAAAAAAGTTGAAATATCAAATTTTCCTTAAA
7263471 ATTTCATAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
54 6 0.07
55 75 0.84
56 8 0.09
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.32
Consensus pattern (55 bp):
AAAAATAATTTCAAAAATTAGAGAAAAAAGTTGAAATATCAAATTTTCCTTAAAT
Found at i:7267610 original size:15 final size:14
Alignment explanation
Indices: 7267584--7267643 Score: 57
Period size: 15 Copynumber: 4.1 Consensus size: 14
7267574 TTTCATTTTC
*
7267584 TTTTTAGTTTTATT
1 TTTTTATTTTTATT
*
7267598 TTTTTGTTATTTATT
1 TTTTTATT-TTTATT
*
7267613 GATTTTATTTTTATT
1 -TTTTTATTTTTATT
*
7267628 TGTTTATTTTTTATT
1 TTTTTA-TTTTTATT
7267643 T
1 T
7267644 ACATAAATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
14 10 0.27
15 21 0.57
16 6 0.16
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:7267617 original size:19 final size:18
Alignment explanation
Indices: 7267559--7267644 Score: 59
Period size: 19 Copynumber: 4.6 Consensus size: 18
7267549 TTTTTTGTAT
* *
7267559 TTTTTTCTTTAATTTTTTCA
1 TTTTTT-TTT-ATTTATTGA
*
7267579 TTTTCTTTTTAGTT-TT-A
1 TTTT-TTTTTATTTATTGA
7267596 TTTTTTTGTTATTTATTGA
1 TTTTTTT-TTATTTATTGA
* *
7267615 TTTTATTTTTATTTGTTTA
1 TTTT-TTTTTATTTATTGA
7267634 TTTTTTATTTA
1 TTTTTT-TTTA
7267645 CATAAATATT
Statistics
Matches: 56, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
16 3 0.05
17 10 0.18
18 6 0.11
19 25 0.45
20 10 0.18
21 2 0.04
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTTTTTTTATTTATTGA
Found at i:7267625 original size:30 final size:30
Alignment explanation
Indices: 7267585--7267642 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7267575 TTCATTTTCT
* *
7267585 TTTTAGTTTTATTTTTTTGTTATTTATTGA
1 TTTTAGTTTTATTTGTTTATTATTTATTGA
* *
7267615 TTTTATTTTTATTTGTTTATTTTTTATT
1 TTTTAGTTTTATTTGTTTATTATTTATT
7267643 TACATAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.78
Consensus pattern (30 bp):
TTTTAGTTTTATTTGTTTATTATTTATTGA
Found at i:7267633 original size:8 final size:7
Alignment explanation
Indices: 7267550--7267643 Score: 50
Period size: 8 Copynumber: 12.4 Consensus size: 7
7267540 CCAACACAAT
7267550 TTTTTGTA
1 TTTTT-TA
7267558 TTTTTT-
1 TTTTTTA
* *
7267564 TCTTTAA
1 TTTTTTA
7267571 TTTTTTCA
1 TTTTTT-A
*
7267579 TTTTCTTT
1 TTTT-TTA
7267587 TTAGTTTTA
1 TT--TTTTA
7267596 TTTTTT-
1 TTTTTTA
7267602 TGTTATTTA
1 T-TT-TTTA
7267611 TTGATTTTA
1 TT--TTTTA
7267620 -TTTTTA
1 TTTTTTA
7267626 TTTGTTTA
1 TTT-TTTA
7267634 TTTTTTA
1 TTTTTTA
7267641 TTT
1 TTT
7267644 ACATAAATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 25
0.69 0.06 0.25
Matches are distributed among these distances:
6 10 0.15
7 20 0.29
8 24 0.35
9 11 0.16
10 3 0.04
ACGTcount: A:0.14, C:0.03, G:0.05, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:7268372 original size:22 final size:22
Alignment explanation
Indices: 7268342--7268385 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7268332 TTCCCTTAAA
* *
7268342 ATTTATGACTTGGCATTTTTAC
1 ATTTATGACATAGCATTTTTAC
*
7268364 ATTTTTGACATAGCATTTTTAC
1 ATTTATGACATAGCATTTTTAC
7268386 TTACATACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.50
Consensus pattern (22 bp):
ATTTATGACATAGCATTTTTAC
Found at i:7278033 original size:22 final size:22
Alignment explanation
Indices: 7277993--7278034 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7277983 TATATATTTA
* *
7277993 TATTTGTATCTATAGAATTAAG
1 TATTTGTATCCATAAAATTAAG
*
7278015 TATTTGTATCCCTAAAATTA
1 TATTTGTATCCATAAAATTA
7278035 GGATAGACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCATAAAATTAAG
Found at i:7281990 original size:22 final size:22
Alignment explanation
Indices: 7281949--7281992 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7281939 CTGTATATTT
*
7281949 ATATTTGTATCTCTAGAATTAA
1 ATATTTGTATCTCTAAAATTAA
7281971 ATATTTGTAT-TCTTAAAATTAA
1 ATATTTGTATCTC-TAAAATTAA
7281993 GATAGACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.48
Consensus pattern (22 bp):
ATATTTGTATCTCTAAAATTAA
Found at i:7289450 original size:18 final size:18
Alignment explanation
Indices: 7289424--7289458 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7289414 TAATCCATGA
*
7289424 GAACCAGAAGCTTTACCT
1 GAACCAGAAACTTTACCT
*
7289442 GAACTAGAAACTTTACC
1 GAACCAGAAACTTTACC
7289459 CAAAGAACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (18 bp):
GAACCAGAAACTTTACCT
Found at i:7289930 original size:22 final size:22
Alignment explanation
Indices: 7289899--7289940 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7289889 TTGTCTATCC
*
7289899 TAATTTTAGAAATACAAATACT
1 TAATTCTAGAAATACAAATACT
*
7289921 TAATTCTAGAGATACAAATA
1 TAATTCTAGAAATACAAATA
7289941 TAAATATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (22 bp):
TAATTCTAGAAATACAAATACT
Found at i:7291608 original size:80 final size:80
Alignment explanation
Indices: 7291475--7291631 Score: 287
Period size: 80 Copynumber: 2.0 Consensus size: 80
7291465 CTCACGTTTC
* *
7291475 GCTATAATTTTCTTATTCTTGAACCCGTATCTTTCACATTACCTTACTATTTGATTTAAATGATT
1 GCTATAATTTTCTTATTCTTGAACCCATATCTTTCACATTACCTCACTATTTGATTTAAATGATT
7291540 ATTTCATTTTATTTT
66 ATTTCATTTTATTTT
*
7291555 GCTATAATTTTCTTATTCTTGAACCCATGTCTTTCACATTACCTCACTATTTGATTTAAATGATT
1 GCTATAATTTTCTTATTCTTGAACCCATATCTTTCACATTACCTCACTATTTGATTTAAATGATT
7291620 ATTTCATTTTAT
66 ATTTCATTTTAT
7291632 CACTAAGTTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.51
Consensus pattern (80 bp):
GCTATAATTTTCTTATTCTTGAACCCATATCTTTCACATTACCTCACTATTTGATTTAAATGATT
ATTTCATTTTATTTT
Found at i:7293513 original size:1 final size:1
Alignment explanation
Indices: 7293502--7293537 Score: 63
Period size: 1 Copynumber: 36.0 Consensus size: 1
7293492 TGAATTTAGC
*
7293502 TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7293538 GCTCATAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:7297648 original size:18 final size:18
Alignment explanation
Indices: 7297600--7297648 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
7297590 TTATAAATTC
*
7297600 AAAAAAAATAAAAACTTT
1 AAAAAATATAAAAACTTT
** *
7297618 AAAAAATCCAAAAATTTT
1 AAAAAATATAAAAACTTT
*
7297636 AAAAATTATAAAA
1 AAAAAATATAAAA
7297649 CCTAAAAATT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAAATATAAAAACTTT
Found at i:7297648 original size:25 final size:25
Alignment explanation
Indices: 7297616--7297673 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
7297606 AATAAAAACT
7297616 TTAAAAAATCC-AAAAATTTTAAAAA
1 TTAAAAAA-CCTAAAAATTTTAAAAA
* *
7297641 TTATAAAACCTAAAAATTTTTAAAA
1 TTAAAAAACCTAAAAATTTTAAAAA
7297666 TTAAAAAA
1 TTAAAAAA
7297674 AAAACCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.07
25 27 0.93
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (25 bp):
TTAAAAAACCTAAAAATTTTAAAAA
Found at i:7298263 original size:18 final size:18
Alignment explanation
Indices: 7298218--7298264 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7298208 TTTTTCAGTT
*
7298218 TTTTAGTTTTTAAAATTTG
1 TTTTA-TTTTTAAAATTTA
*
7298237 TTTTATTTTTAAATTTTCA
1 TTTTATTTTTAAAATTT-A
7298256 TTTT-TTTTT
1 TTTTATTTTT
7298265 CATTTTGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (18 bp):
TTTTATTTTTAAAATTTA
Found at i:7298623 original size:36 final size:39
Alignment explanation
Indices: 7298578--7298667 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 39
7298568 TTTTTAACTT
* *
7298578 TTTAGTTTTTTTTTTTTGAAA-TTTTTT-AT-TTTCAGAA
1 TTTA-TTTTTTTTTTTTCAAATTTTTTTAATATTTCAAAA
*
7298615 TTTATTTTTGATTTTTTCAAATTTTTTTAATATTTCAAAA
1 TTTATTTTT-TTTTTTTCAAATTTTTTTAATATTTCAAAA
*
7298655 TTT-TTTCTTTTTT
1 TTTATTTTTTTTTT
7298668 AATTTTTGGA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
36 5 0.11
37 13 0.30
38 10 0.23
39 6 0.14
40 10 0.23
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (39 bp):
TTTATTTTTTTTTTTTCAAATTTTTTTAATATTTCAAAA
Found at i:7298640 original size:18 final size:19
Alignment explanation
Indices: 7298619--7298660 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
7298609 TCAGAATTTA
* *
7298619 TTTTTGATTTTTTC-AAAT
1 TTTTTGAATATTTCAAAAT
*
7298637 TTTTTTAATATTTCAAAAT
1 TTTTTGAATATTTCAAAAT
7298656 TTTTT
1 TTTTT
7298661 CTTTTTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTGAATATTTCAAAAT
Found at i:7298667 original size:37 final size:33
Alignment explanation
Indices: 7298583--7298674 Score: 80
Period size: 38 Copynumber: 2.6 Consensus size: 33
7298573 AACTTTTTAG
* *
7298583 TTTTTTTTTTTTGAAATTTTTTATTTTCAGAATT
1 TTTTTTTTTTTTCAAATTTTTTATTTTCA-AAAT
7298617 TATTTTTGATTTTTTCAAATTTTTTTAATATTTCAAAAT
1 T-TTTTT--TTTTTTCAAA-TTTTTT-AT-TTTCAAAAT
*
7298656 TTTTTCTTTTTT--AATTTTT
1 TTTTTTTTTTTTCAAATTTTT
7298675 GGAATTTTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
33 5 0.10
34 3 0.06
35 5 0.10
36 6 0.12
37 9 0.18
38 10 0.20
39 6 0.12
40 5 0.10
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.70
Consensus pattern (33 bp):
TTTTTTTTTTTTCAAATTTTTTATTTTCAAAAT
Found at i:7298790 original size:30 final size:29
Alignment explanation
Indices: 7298746--7298818 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
7298736 ATTTTAGGAT
* *
7298746 TTTTTTAATGTTTC-AAAATTTTTTTGAA
1 TTTTTTAATTTTTCAAAAATTGTTTTGAA
7298774 GTTTTATTAATTTTTCAAAAAATTGTTTTGAA
1 -TTTT-TTAATTTTTC-AAAAATTGTTTTGAA
*
7298806 TTTTTCAATTTTT
1 TTTTTTAATTTTT
7298819 TTAATTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
29 4 0.11
30 17 0.45
31 4 0.11
32 13 0.34
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTTTTAATTTTTCAAAAATTGTTTTGAA
Found at i:7298803 original size:32 final size:30
Alignment explanation
Indices: 7298760--7298818 Score: 82
Period size: 32 Copynumber: 1.9 Consensus size: 30
7298750 TTAATGTTTC
* *
7298760 AAAATTTTTTTGAAGTTTTATTAATTTTTCAA
1 AAAATTGTTTTGAA-TTTT-TCAATTTTTCAA
7298792 AAAATTGTTTTGAATTTTTCAATTTTT
1 AAAATTGTTTTGAATTTTTCAATTTTT
7298819 TTAATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.32
31 4 0.16
32 13 0.52
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (30 bp):
AAAATTGTTTTGAATTTTTCAATTTTTCAA
Found at i:7299831 original size:25 final size:26
Alignment explanation
Indices: 7299794--7299847 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
7299784 GATCTTAATT
* * *
7299794 TTATGATTATTTTCAC-CTTTTTACA
1 TTATGATCATTTTAACACATTTTACA
*
7299819 TTATGATCCTTTTAACACATTTTACA
1 TTATGATCATTTTAACACATTTTACA
7299845 TTA
1 TTA
7299848 AATTATATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.28, C:0.17, G:0.04, T:0.52
Consensus pattern (26 bp):
TTATGATCATTTTAACACATTTTACA
Found at i:7300609 original size:220 final size:213
Alignment explanation
Indices: 7299831--7300629 Score: 531
Period size: 215 Copynumber: 3.7 Consensus size: 213
7299821 ATGATCCTTT
* * * * *
7299831 TAACACATTTTACATTAAATTATATTAATTTTATAATTATTCTCA-TCTTTTTACATTAACACTT
1 TAAC-CATTTTACATAAAATAATATTAATTTTACAATTACTCTCACT-TTTTTATATTAACACTT
* * * * **
7299895 ATTTTTCGGTTTAAAATTATTTTTACTTATAATAATATTTTTTATAC-TGT-CAATTTAATTATT
64 ATTTTT-GGTTTAGAATTA-TTTTATTTGTAATAATAATTTTT-TACGT-TACAAAAT-ATTATT
* * * *** * * * * * *
7299958 TATGTTACAATAAAAATTTTTATGCTTGTTTTTACATTTTATTATATTTAAAATTATTA-AAATT
124 TATGTTATAATAATATTTTTTACAATAGTTATTACCTTTCATTATATTTAAAATTATCACAACTT
* * * * * *
7300022 TGTT-TTAAAGTATTATGACACTTC
189 TTTTATTAAAATGTAATAATACTTC
** * ** * * ** * *
7300046 -AAATATATTTCACACT-AAATTATACCATTTTTACGATTGTTTTCA-TCTTTTTATTTTAACAC
1 TAACCAT-TTT-ACA-TAAAATAATATTAATTTTACAATTACTCTCACT-TTTTTATATTAACAC
* * *
7300108 TTATTTTTTGATTTAGAATTAATTTTATTTATAATACTAAGTTTTTTACGTTAC-AAAT-TTA-T
62 TTA-TTTTTGGTTTAGAATT-ATTTTATTTGTAATAATAA-TTTTTTACGTTACAAAATATTATT
* ** * * * * *
7300170 TATGTTTTAATAATATCTTTTTACAATTTTTGTTACTTTTCATTATGTTTAAAATTATTACAATT
124 TATGTTATAATAATAT-TTTTTACAATAGTTATTACCTTTCATTATATTTAAAATTATCACAACT
* *
7300235 TTTTTATTAAGATGTAATGATACTTC
188 TTTTTATTAAAATGTAATAATACTTC
* * * * * * **
7300261 TAACTATTTTACGTAAAATAATATTAATTTTATAATTATTCTCACTGTTTTATGTTAATTCTTAT
1 TAACCATTTTACATAAAATAATATTAATTTTACAATTACTCTCACTTTTTTATATTAACACTTAT
* * * * **
7300326 TTTTTGTTTAAAATTATTTTTTATTTGTAAAAATAATTTTTTTACATTACCAACTTAATTATTTA
66 TTTTGGTTTAGAATTA--TTTTATTTGTAATAATAA-TTTTTTACGTTA-CAAAAT-ATTATTTA
* * ** *
7300391 TCTGATAATAATATTTTCTTACGCTAGTTATTACCTTTCATTATATTTAAAATTATCATAACTTT
126 TGTTATAATAATATTTT-TTACAATAGTTATTACCTTTCATTATATTTAAAATTATCACAACTTT
* *
7300456 TTTCTTAAAAGTGTCATAATACTTC
190 TTTATTAAAA-TGTAATAATACTTC
* * * * *
7300481 TAACCATTTTATATCAAATGATATTAATTTTACGATTACTCTTACATTTTTTATATTAACACTTA
1 TAACCATTTTACATAAAATAATATTAATTTTACAATTACTCTCAC-TTTTTTATATTAACACTTA
* * *
7300546 TTTTTGGTTTAGAATTATTAATTATTTGTAATAGTAATTATTTTATGTTGCTAAAATATTATTTA
65 TTTTTGGTTTAGAATTATT--TTATTTGTAATAATAATT-TTTTACGTTAC-AAAATATTATTTA
*
7300611 TGTTACAATAATATTTTTT
126 TGTTATAATAATATTTTTT
7300630 TATACTTGTT
Statistics
Matches: 453, Mismatches: 103, Indels: 52
0.75 0.17 0.09
Matches are distributed among these distances:
212 14 0.03
213 54 0.12
214 75 0.17
215 93 0.21
216 21 0.05
218 6 0.01
219 63 0.14
220 73 0.16
221 54 0.12
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.53
Consensus pattern (213 bp):
TAACCATTTTACATAAAATAATATTAATTTTACAATTACTCTCACTTTTTTATATTAACACTTAT
TTTTGGTTTAGAATTATTTTATTTGTAATAATAATTTTTTACGTTACAAAATATTATTTATGTTA
TAATAATATTTTTTACAATAGTTATTACCTTTCATTATATTTAAAATTATCACAACTTTTTTATT
AAAATGTAATAATACTTC
Found at i:7300623 original size:20 final size:21
Alignment explanation
Indices: 7300582--7300632 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
7300572 TGTAATAGTA
*
7300582 ATTATTTTATGTTGCTAAAAT
1 ATTATTTTATGTTACTAAAAT
7300603 ATTA-TTTATGTTAC-AATAAT
1 ATTATTTTATGTTACTAA-AAT
*
7300623 ATTTTTTTAT
1 ATTATTTTAT
7300633 ACTTGTTCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 2 0.08
20 15 0.58
21 9 0.35
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (21 bp):
ATTATTTTATGTTACTAAAAT
Found at i:7300906 original size:9 final size:9
Alignment explanation
Indices: 7300892--7300921 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
7300882 GATATTTTAT
7300892 TAATTAAAA
1 TAATTAAAA
7300901 TAATTAAAA
1 TAATTAAAA
7300910 TATATTAAAA
1 TA-ATTAAAA
7300920 TA
1 TA
7300922 TAAAATCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAA
Found at i:7300918 original size:10 final size:10
Alignment explanation
Indices: 7300894--7300923 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7300884 TATTTTATTA
7300894 ATTAAAATA-
1 ATTAAAATAT
7300903 ATTAAAATAT
1 ATTAAAATAT
7300913 ATTAAAATAT
1 ATTAAAATAT
7300923 A
1 A
7300924 AAATCTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:7300935 original size:19 final size:20
Alignment explanation
Indices: 7300891--7300937 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
7300881 AGATATTTTA
7300891 TTAATTAAAATAATTAAAAT
1 TTAATTAAAATAATTAAAAT
*
7300911 AT-ATTAAAAT-A-TAAAAT
1 TTAATTAAAATAATTAAAAT
7300928 CTTAATTAAA
1 -TTAATTAAA
7300938 CTCATGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 6 0.26
18 2 0.09
19 14 0.61
20 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAATTAAAATAATTAAAAT
Found at i:7301250 original size:16 final size:16
Alignment explanation
Indices: 7301215--7301251 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7301205 TATTCTTATC
7301215 TTTTTACACTAACATA
1 TTTTTACACTAACATA
7301231 -TTTTACACTAA-ATAA
1 TTTTTACACTAACAT-A
7301246 TTTTTA
1 TTTTTA
7301252 TTTTTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 2 0.11
15 12 0.63
16 5 0.26
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTTTACACTAACATA
Found at i:7302676 original size:19 final size:18
Alignment explanation
Indices: 7302636--7302682 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
7302626 TATTAACTTT
*
7302636 TATTTTTTAGTTTAAAAT
1 TATTTTTTAGTTTAAAAA
7302654 TATTTTTTA-TTTATAATAA
1 TATTTTTTAGTTTA-AA-AA
7302673 TATTTCTTTA
1 TATTT-TTTA
7302683 ACATTACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 4 0.16
18 11 0.44
19 6 0.24
20 4 0.16
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTTTTTAGTTTAAAAA
Found at i:7302830 original size:219 final size:220
Alignment explanation
Indices: 7302596--7303023 Score: 499
Period size: 219 Copynumber: 1.9 Consensus size: 220
7302586 ATCAAATAAT
* * ** *
7302596 ATTAATTTTATGATTATTCTCACTTTTTTATATTAACTTTTATTT-TTTAGTTTAAAATTATTTT
1 ATTAATTTTATGATTATTCTCACCTTTTTACATTAACACTTATTTATTGA-TTTAAAATTATTTT
*
7302660 TT-ATTTATA-ATAATATTTCTTTAACATTACCAACTTAATTATTCT-TGTTACAA-TAATATCC
65 TTGATTTA-AGATAATAATTCTTTAACATTACCAACTTAATTATT-TATGTTACAAGT-ATATCC
* * * * * *
7302721 TTTTATGCTTATTATTACTTTTCATTACGTTTATAATTGTCACAACTATTTGTTAGGGTGTTACG
127 TTTTATGCTTATTATTAC-CTTCATTACGTTTAAAATTATCACAACTATTTCTTAAGGAGTTACG
* *
7302786 ATACTTC-AACTCATTTTACGTTAAATGAC
191 ACACTTCTAACACATTTTACGTTAAATGAC
* *
7302815 ATTAATTTTATGATTATTTTCACCTTTTTACATTAACACTTATTTATTGATTTAGAATTATTTTT
1 ATTAATTTTATGATTATTCTCACCTTTTTACATTAACACTTATTTATTGATTTAAAATTATTTTT
* * * * ** * *
7302880 TGGTTTAAGGTAATAATTCTTTTACGTTGTCAACTTAATTATTTATGTTATAAGTATATCTTTTT
66 TGATTTAAGATAATAATTCTTTAACATTACCAACTTAATTATTTATGTTACAAGTATATCCTTTT
* * * * * *
7302945 ATGTTTGTTCTTACCTTCATTATGTTTAAAATTATCACAACTCTTTCTTAAGGAGTTACGACATT
131 ATGCTTATTATTACCTTCATTACGTTTAAAATTATCACAACTATTTCTTAAGGAGTTACGACACT
7303010 TCTAACACATTTTA
196 TCTAACACATTTTA
7303024 TGCCAAATTA
Statistics
Matches: 173, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
219 100 0.58
220 72 0.42
221 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.07, T:0.51
Consensus pattern (220 bp):
ATTAATTTTATGATTATTCTCACCTTTTTACATTAACACTTATTTATTGATTTAAAATTATTTTT
TGATTTAAGATAATAATTCTTTAACATTACCAACTTAATTATTTATGTTACAAGTATATCCTTTT
ATGCTTATTATTACCTTCATTACGTTTAAAATTATCACAACTATTTCTTAAGGAGTTACGACACT
TCTAACACATTTTACGTTAAATGAC
Found at i:7305384 original size:7 final size:7
Alignment explanation
Indices: 7305372--7305423 Score: 52
Period size: 7 Copynumber: 7.0 Consensus size: 7
7305362 ATAATCTAAT
7305372 TAAAAAA
1 TAAAAAA
7305379 TAAAAAAA
1 T-AAAAAA
*
7305387 TAAGAAA
1 TAAAAAA
7305394 TAAAAAAA
1 T-AAAAAA
7305402 TAAAAAA
1 TAAAAAA
7305409 TGTAAAAAA
1 --TAAAAAA
7305418 -AAAAAA
1 TAAAAAA
7305424 AGGGAGAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
6 6 0.15
7 13 0.33
8 13 0.33
9 7 0.18
ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13
Consensus pattern (7 bp):
TAAAAAA
Found at i:7305386 original size:8 final size:8
Alignment explanation
Indices: 7305373--7305424 Score: 63
Period size: 8 Copynumber: 6.6 Consensus size: 8
7305363 TAATCTAATT
7305373 AAAAAATA
1 AAAAAATA
7305381 AAAAAAT-
1 AAAAAATA
*
7305388 AAGAAATA
1 AAAAAATA
7305396 AAAAAATA
1 AAAAAATA
*
7305404 AAAAATGTA
1 AAAAA-ATA
7305413 AAAAAA-A
1 AAAAAATA
7305420 AAAAA
1 AAAAA
7305425 GGGAGAAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
7 12 0.32
8 19 0.50
9 7 0.18
ACGTcount: A:0.85, C:0.00, G:0.04, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:7305394 original size:15 final size:15
Alignment explanation
Indices: 7305372--7305424 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
7305362 ATAATCTAAT
7305372 TAAAAAATAAAAAAA
1 TAAAAAATAAAAAAA
*
7305387 TAAGAAATAAAAAAA
1 TAAAAAATAAAAAAA
7305402 TAAAAAATGTAAAAAAA
1 TAAAAAA--TAAAAAAA
7305419 -AAAAAA
1 TAAAAAA
7305425 GGGAGAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 20 0.59
16 6 0.18
17 8 0.24
ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13
Consensus pattern (15 bp):
TAAAAAATAAAAAAA
Found at i:7305399 original size:23 final size:24
Alignment explanation
Indices: 7305355--7305408 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 24
7305345 GTTGATTTTT
* *
7305355 TAAAAAAATAATCTAATTAAAAAA
1 TAAAAAAATAATCAAATAAAAAAA
*
7305379 TAAAAAAATAA-GAAATAAAAAAA
1 TAAAAAAATAATCAAATAAAAAAA
7305402 TAAAAAA
1 TAAAAAA
7305409 TGTAAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (24 bp):
TAAAAAAATAATCAAATAAAAAAA
Found at i:7305421 original size:23 final size:23
Alignment explanation
Indices: 7305373--7305424 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7305363 TAATCTAATT
*
7305373 AAAAAATAAAAAAATAAGAAATA
1 AAAAAATAAAAAAATAAGAAAAA
*
7305396 AAAAAATAAAAAATGTAA-AAAAA
1 AAAAAATAAAAAA-ATAAGAAAAA
7305419 AAAAAA
1 AAAAAA
7305425 GGGAGAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.85, C:0.00, G:0.04, T:0.12
Consensus pattern (23 bp):
AAAAAATAAAAAAATAAGAAAAA
Found at i:7306266 original size:5 final size:6
Alignment explanation
Indices: 7306249--7306273 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7306239 TATTAAATAT
7306249 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
7306274 ACATGTGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:7306685 original size:26 final size:26
Alignment explanation
Indices: 7306639--7306688 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
7306629 ATTCCATTGA
*
7306639 AAAAAAATAAAATACATAAAAAAATT
1 AAAAAAATAAAATACAAAAAAAAATT
*
7306665 AAAAAATTAAAA-ACCAAAAAAAAA
1 AAAAAAATAAAATA-CAAAAAAAAA
7306689 AATTGAGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (26 bp):
AAAAAAATAAAATACAAAAAAAAATT
Found at i:7307946 original size:16 final size:16
Alignment explanation
Indices: 7307914--7307948 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7307904 CCCACTCCTG
7307914 ATTTAATTTATATTAT
1 ATTTAATTTATATTAT
7307930 ATTTATATTTATA-TAT
1 ATTTA-ATTTATATTAT
7307946 ATT
1 ATT
7307949 ATTATAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTAATTTATATTAT
Found at i:7314676 original size:28 final size:29
Alignment explanation
Indices: 7314643--7314708 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 29
7314633 AAATTAATTT
* *
7314643 AAAATAAAAGACAAGAAG-AAAAATGGAA
1 AAAATAAAAGACAAAAAGAAAAAAAGGAA
7314671 AAAATAAAAGACAAAAAGAAAAAAAGGAA
1 AAAATAAAAGACAAAAAGAAAAAAAGGAA
7314700 AAAA-AAAAG
1 AAAATAAAAG
7314709 TTGAGTTGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 22 0.63
29 13 0.37
ACGTcount: A:0.77, C:0.03, G:0.15, T:0.05
Consensus pattern (29 bp):
AAAATAAAAGACAAAAAGAAAAAAAGGAA
Found at i:7314983 original size:18 final size:18
Alignment explanation
Indices: 7314957--7314991 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7314947 TGATAATGAG
*
7314957 AAAGAAAAAAATAGAAAA
1 AAAGAAAAAAAAAGAAAA
*
7314975 AAAGTAAAAAAAAGAAA
1 AAAGAAAAAAAAAGAAA
7314992 TCAAATAACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (18 bp):
AAAGAAAAAAAAAGAAAA
Found at i:7316453 original size:29 final size:27
Alignment explanation
Indices: 7316429--7316482 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
7316419 ATTTTTCATT
*
7316429 TTTTTTTCTTGTAGAATTATCTTTTTTC
1 TTTTTTT-TTGTAGAATTATATTTTTTC
7316457 TTTTTTTTTGTAGAATTATATTTTTT
1 TTTTTTTTTGTAGAATTATATTTTTT
7316483 TACCCCCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.17, C:0.06, G:0.07, T:0.70
Consensus pattern (27 bp):
TTTTTTTTTGTAGAATTATATTTTTTC
Found at i:7316461 original size:30 final size:28
Alignment explanation
Indices: 7316420--7316482 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 28
7316410 ATTAAAAGGA
*
7316420 TTTTTCATTTTTTTTTCTTGTAGAATTATCT
1 TTTTTCA--TTTTTTT-TTGTAGAATTATAT
7316451 TTTTTC-TTTTTTTTTGTAGAATTATAT
1 TTTTTCATTTTTTTTTGTAGAATTATAT
7316478 TTTTT
1 TTTTT
7316483 TACCCCCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 18 0.58
28 7 0.23
31 6 0.19
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.71
Consensus pattern (28 bp):
TTTTTCATTTTTTTTTGTAGAATTATAT
Found at i:7316579 original size:16 final size:16
Alignment explanation
Indices: 7316567--7316604 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7316557 AAAAATAAGT
7316567 TAAAAATAAAATAAAA
1 TAAAAATAAAATAAAA
*
7316583 TAAAATTAAAATTAAAA
1 TAAAAATAAAA-TAAAA
7316600 -AAAAA
1 TAAAAA
7316605 ACTCACGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
TAAAAATAAAATAAAA
Found at i:7316579 original size:22 final size:23
Alignment explanation
Indices: 7316545--7316605 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
7316535 GTCATTTTTT
* *
7316545 TTAAAAA-ATAATAAAAAT-AAG
1 TTAAAAATAAAATAAAAATAAAA
7316566 TTAAAAATAAAAT-AAAATAAAA
1 TTAAAAATAAAATAAAAATAAAA
* *
7316588 TTAAAATTAAAAAAAAAA
1 TTAAAAATAAAATAAAAA
7316606 CTCACGATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 12 0.36
22 17 0.52
23 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (23 bp):
TTAAAAATAAAATAAAAATAAAA
Found at i:7317488 original size:3 final size:3
Alignment explanation
Indices: 7317476--7317622 Score: 138
Period size: 3 Copynumber: 49.0 Consensus size: 3
7317466 AGAACAAAAA
* * *
7317476 AAT AAA AAT AAT AAT AAA AAT AAT AAT ATT AAT AAT AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * * *
7317523 AAG AAA AAA AAC ACAG AAA AAT AA- AGAT AAA AAGG AA- AGT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AA-T AAT AAT AAT AAT
7317569 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7317617 AAT AAT
1 AAT AAT
7317623 TTATAAAAAA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
2 4 0.03
3 114 0.93
4 5 0.04
ACGTcount: A:0.69, C:0.01, G:0.04, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:7317566 original size:66 final size:66
Alignment explanation
Indices: 7317457--7317588 Score: 185
Period size: 66 Copynumber: 2.0 Consensus size: 66
7317447 AACAAAGAAT
* * *
7317457 AAGAAAAAAAGAACAAAAAAATAAAAATAATAATAAAAATAATAATATTAATAATAATAATAATA
1 AAGAAAAAAAGAACAAAAAAATAAAAATAAAAAGAAAAATAATAATAATAATAATAATAATAATA
7317522 A
66 A
* * * *
7317523 AAGAAAAAAA-ACACAGAAAAATAAAGATAAAAAGGAAAGTAATAATAATAATAATAATAATAAT
1 AAGAAAAAAAGA-ACAAAAAAATAAAAATAAAAAGAAAAATAATAATAATAATAATAATAATAAT
7317587 AA
65 AA
7317589 TAATAATAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 1 0.02
66 57 0.98
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.19
Consensus pattern (66 bp):
AAGAAAAAAAGAACAAAAAAATAAAAATAAAAAGAAAAATAATAATAATAATAATAATAATAATA
A
Found at i:7318121 original size:114 final size:114
Alignment explanation
Indices: 7317999--7318269 Score: 310
Period size: 114 Copynumber: 2.4 Consensus size: 114
7317989 CGTAAGTCTG
* * *
7317999 AAGATGATCTGATCGGAGCCAAGATCGAATGACTGGGACGATGCCGTGAGTTTG-AAGGTGACCA
1 AAGATGATCTGACCGGAGCCAAGATCAAATGACTGGGACGATGCCGTAAG-TTGAAAGGTGACCA
*
7318063 AGATCGAGTCAAAATCACAAATAAATGACTGGACTGCTATCGTGAGTCAA
65 AGATCGAGTCAAAATCACAAATAAATGACTGGACTGATATCGTGAGTCAA
* ***
7318113 AAGATGATCTGACCTGAGTTGAGATCAAATGACTGGGACGATGCCGTAAGTTGAAAGGTGACCAA
1 AAGATGATCTGACCGGAGCCAAGATCAAATGACTGGGACGATGCCGTAAGTTGAAAGGTGACCAA
* * *** * ** **
7318178 GATCGAGTTAAGATTGTAAATAAATGACTGTACTGATATCACGAGTTTA
66 GATCGAGTCAAAATCACAAATAAATGACTGGACTGATATCGTGAGTCAA
* * ** * *
7318227 AAGATGATTTGACCTGAGTTAAGATCAAATAACTGGGATGATG
1 AAGATGATCTGACCGGAGCCAAGATCAAATGACTGGGACGATG
7318270 TCATGAGTAA
Statistics
Matches: 134, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
113 3 0.02
114 131 0.98
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.24
Consensus pattern (114 bp):
AAGATGATCTGACCGGAGCCAAGATCAAATGACTGGGACGATGCCGTAAGTTGAAAGGTGACCAA
GATCGAGTCAAAATCACAAATAAATGACTGGACTGATATCGTGAGTCAA
Found at i:7326351 original size:4 final size:4
Alignment explanation
Indices: 7326342--7326377 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
7326332 TTGTTATGAT
7326342 AATG AATG AATG AATG AATG AATG AATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG
7326378 TGATGCAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
AATG
Found at i:7329685 original size:29 final size:29
Alignment explanation
Indices: 7329653--7329716 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
7329643 AAAAAGATTT
*
7329653 TTTTTTCAATTTATTCTTGCAGAATTATC
1 TTTTTTCAATTTATTCTTGCAGAATTATA
** * * *
7329682 TTTTTTCTTTTTTTTTTTGTAGAATTATA
1 TTTTTTCAATTTATTCTTGCAGAATTATA
7329711 TTTTTT
1 TTTTTT
7329717 TACCTCTATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.67
Consensus pattern (29 bp):
TTTTTTCAATTTATTCTTGCAGAATTATA
Found at i:7329822 original size:6 final size:6
Alignment explanation
Indices: 7329801--7329841 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
7329791 AAAAATAGGT
7329801 TAAAAA T-AAAA T-AAAA TAAAAA TCAAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA T--AAAAA TAAAAA TAAAA
7329842 TGAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 10 0.31
6 16 0.50
8 6 0.19
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:7329832 original size:14 final size:13
Alignment explanation
Indices: 7329802--7329841 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
7329792 AAAATAGGTT
7329802 AAAAAT-AAAAT-
1 AAAAATAAAAATA
7329813 -AAAATAAAAATCA
1 AAAAATAAAAAT-A
7329826 AAAAATAAAAATA
1 AAAAATAAAAATA
7329839 AAA
1 AAA
7329842 TGAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 5 0.20
11 5 0.20
13 4 0.16
14 11 0.44
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:7329848 original size:20 final size:19
Alignment explanation
Indices: 7329808--7329850 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
7329798 GGTTAAAAAT
*
7329808 AAAATAAAATAAAAATCAA
1 AAAATAAAATAAAAATAAA
7329827 AAAATAAAA-ATAAAATGAAA
1 AAAATAAAATA-AAAAT-AAA
7329847 AAAA
1 AAAA
7329851 AACCAGCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 14 0.67
20 6 0.29
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (19 bp):
AAAATAAAATAAAAATAAA
Found at i:7330251 original size:9 final size:9
Alignment explanation
Indices: 7330229--7330258 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
7330219 TGTTCTTCCC
7330229 AAAAACCCA
1 AAAAACCCA
7330238 GAAAAACCCA
1 -AAAAACCCA
7330248 AAAAACCCA
1 AAAAACCCA
7330257 AA
1 AA
7330259 TTTCTTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.67, C:0.30, G:0.03, T:0.00
Consensus pattern (9 bp):
AAAAACCCA
Found at i:7330784 original size:3 final size:3
Alignment explanation
Indices: 7330776--7330809 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7330766 AAAAGAAAAG
7330776 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7330810 TTATAAGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7331286 original size:20 final size:20
Alignment explanation
Indices: 7331263--7331322 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
7331253 AATTCAACTT
*
7331263 TAAACCTAGAAATTTAAACC
1 TAAACCCAGAAATTTAAACC
*
7331283 TAAACCCAGAACTTTAAACC
1 TAAACCCAGAAATTTAAACC
* *
7331303 TAAGACCCAAAAATTCAAAC
1 TAA-ACCCAGAAATTTAAAC
7331323 TACTACCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 21 0.62
21 13 0.38
ACGTcount: A:0.50, C:0.25, G:0.05, T:0.20
Consensus pattern (20 bp):
TAAACCCAGAAATTTAAACC
Found at i:7336669 original size:28 final size:28
Alignment explanation
Indices: 7336629--7336688 Score: 104
Period size: 28 Copynumber: 2.1 Consensus size: 28
7336619 TTGGTGGCCT
7336629 TAGATTTAGGCATAACTTCTTTTTAT-CC
1 TAGATTTAGGCATAACTTC-TTTTATCCC
7336657 TAGATTTAGGCATAACTTCTTTTATCCC
1 TAGATTTAGGCATAACTTCTTTTATCCC
7336685 TAGA
1 TAGA
7336689 CTGTTACTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (28 bp):
TAGATTTAGGCATAACTTCTTTTATCCC
Found at i:7341403 original size:14 final size:16
Alignment explanation
Indices: 7341376--7341407 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
7341366 AATGACAGAT
7341376 AAATGAAAATAAATAA
1 AAATGAAAATAAATAA
7341392 AAAT-AAAA-AAATAA
1 AAATGAAAATAAATAA
7341406 AA
1 AA
7341408 TACAAGCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 4 0.25
16 4 0.25
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAATGAAAATAAATAA
Found at i:7342833 original size:20 final size:20
Alignment explanation
Indices: 7342810--7342868 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
7342800 ATTCAACTCC
7342810 AAACCTAGAAATTTAAACCT
1 AAACCTAGAAATTTAAACCT
* * *
7342830 AAACCTAGAACTTAAAACTT
1 AAACCTAGAAATTTAAACCT
* *
7342850 AAGACCCATAAATTTAAAC
1 AA-ACCTAGAAATTTAAAC
7342869 TACTTTCAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.51, C:0.20, G:0.05, T:0.24
Consensus pattern (20 bp):
AAACCTAGAAATTTAAACCT
Found at i:7344332 original size:18 final size:18
Alignment explanation
Indices: 7344309--7344349 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
7344299 GGTTCTTCTG
* *
7344309 ATAAATGCATACAATTTT
1 ATAAATGAATACAATTTA
7344327 ATAAATGAATACAATTTA
1 ATAAATGAATACAATTTA
7344345 ATAAA
1 ATAAA
7344350 CCTTTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (18 bp):
ATAAATGAATACAATTTA
Found at i:7346814 original size:22 final size:22
Alignment explanation
Indices: 7346784--7346834 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
7346774 TATGAGTTCC
*
7346784 TTTTT-TTTTTAGTTTTTATTT
1 TTTTTATTTTTAGTTTTTATCT
*
7346805 TTTTTATTTTTGGTTTTTATCT
1 TTTTTATTTTTAGTTTTTATCT
*
7346827 TTTATATT
1 TTTTTATT
7346835 AGATAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.12, C:0.02, G:0.06, T:0.80
Consensus pattern (22 bp):
TTTTTATTTTTAGTTTTTATCT
Found at i:7346822 original size:16 final size:16
Alignment explanation
Indices: 7346786--7346815 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7346776 TGAGTTCCTT
7346786 TTTTTTTTAGTTTTTA
1 TTTTTTTTAGTTTTTA
7346802 TTTTTTTTA-TTTTT
1 TTTTTTTTAGTTTTT
7346816 GGTTTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.87
Consensus pattern (16 bp):
TTTTTTTTAGTTTTTA
Found at i:7348420 original size:21 final size:21
Alignment explanation
Indices: 7348372--7348420 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
7348362 CTTCCACTAA
7348372 TTTCTTCAGCTTCTTCACTTC
1 TTTCTTCAGCTTCTTCACTTC
* * *
7348393 ATCCTTCAGCTTTTTC-CTCTC
1 TTTCTTCAGCTTCTTCACT-TC
7348414 TTTCTTC
1 TTTCTTC
7348421 CACTCCACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.08, C:0.35, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTCTTCAGCTTCTTCACTTC
Found at i:7350250 original size:16 final size:15
Alignment explanation
Indices: 7350225--7350254 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7350215 ACAAATTCCA
7350225 AAAAATTGAAAAAAG
1 AAAAATTGAAAAAAG
7350240 AAAAATATGAAAAAA
1 AAAAAT-TGAAAAAA
7350255 ATTAACAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AAAAATTGAAAAAAG
Found at i:7350403 original size:28 final size:27
Alignment explanation
Indices: 7350326--7350404 Score: 72
Period size: 29 Copynumber: 2.9 Consensus size: 27
7350316 AAGAATTTCA
* *
7350326 AAAAATTTTCCAAAAAA--GAAAAAGTG
1 AAAAATTTT-AAAAAAATTGAAAAAGTC
* * *
7350352 AAAAATTTTTAAAAATTCTAAAAAAGTCC
1 AAAAATTTTAAAAAAAT-TGAAAAAGT-C
7350381 AAAAATTTTAAAAAAATTGAAAAA
1 AAAAATTTTAAAAAAATTGAAAAA
7350405 AAAAAACTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
25 5 0.12
26 9 0.21
28 13 0.31
29 15 0.36
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (27 bp):
AAAAATTTTAAAAAAATTGAAAAAGTC
Found at i:7350561 original size:15 final size:14
Alignment explanation
Indices: 7350541--7350575 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
7350531 AAAAAATGCA
7350541 AAAAAAAAGAAAAAT
1 AAAAAAAA-AAAAAT
*
7350556 AAAAAAAATAAAAT
1 AAAAAAAAAAAAAT
7350570 AAAAAA
1 AAAAAA
7350576 TGATTTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.09
Consensus pattern (14 bp):
AAAAAAAAAAAAAT
Found at i:7351372 original size:17 final size:17
Alignment explanation
Indices: 7351346--7351386 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
7351336 TTAATATAAA
*
7351346 TTAAAATATATATTTAT
1 TTAAAATATAAATTTAT
*
7351363 TTAAACTATAAATTTAT
1 TTAAAATATAAATTTAT
*
7351380 CTAAAAT
1 TTAAAAT
7351387 TGATCAATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
TTAAAATATAAATTTAT
Found at i:7352447 original size:56 final size:56
Alignment explanation
Indices: 7352371--7352477 Score: 205
Period size: 56 Copynumber: 1.9 Consensus size: 56
7352361 CGTTCATTCA
*
7352371 AATTTATAAAGTACAGGTCCATTTCACATTAAATTTGGTGATCAACCATGCATACT
1 AATTTATAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGCATACT
7352427 AATTTATAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGC
1 AATTTATAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGC
7352478 TTCCCGGTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (56 bp):
AATTTATAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGCATACT
Found at i:7352546 original size:70 final size:70
Alignment explanation
Indices: 7352433--7352573 Score: 239
Period size: 70 Copynumber: 2.0 Consensus size: 70
7352423 TACTAATTTA
*
7352433 TAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGCTTCCCGGTAAAAACTA-TAT
1 TAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGCTTCCCAGTAAAAACTACT-T
7352497 GTGCCT
65 GTGCCT
* *
7352503 TAAAGTACAGGTCCATTTCACATTAAATTTGGTGATCAACCATGCTTCCTAGTAAAAACTACTTG
1 TAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGCTTCCCAGTAAAAACTACTTG
7352568 TGCCT
66 TGCCT
7352573 T
1 T
7352574 TGTTACTATG
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
70 66 0.99
71 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.33
Consensus pattern (70 bp):
TAAAGTACAGGTCCATTTAACATTAAATTTGGTGATCAACCATGCTTCCCAGTAAAAACTACTTG
TGCCT
Found at i:7352659 original size:2 final size:2
Alignment explanation
Indices: 7352652--7352705 Score: 74
Period size: 2 Copynumber: 27.5 Consensus size: 2
7352642 GGATAAGGTT
* *
7352652 TA TA TA TA TA TA TA TA TA TA TA TA -A AA AA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7352693 TA TA AA TA TA TA T
1 TA TA TA TA TA TA T
7352706 TGCCAGAGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:7352685 original size:21 final size:21
Alignment explanation
Indices: 7352659--7352698 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7352649 GTTTATATAT
7352659 ATATATATATATATATAAAAA
1 ATATATATATATATATAAAAA
7352680 ATATATATATATATATAAA
1 ATATATATATATATATAAA
7352699 TATATATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
ATATATATATATATATAAAAA
Found at i:7353765 original size:17 final size:18
Alignment explanation
Indices: 7353745--7353782 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
7353735 CTTATTTCAT
7353745 TTTAATTTTA-ATTTTAA
1 TTTAATTTTATATTTTAA
*
7353762 TTT-ATTTTATATTTTGA
1 TTTAATTTTATATTTTAA
7353779 TTTA
1 TTTA
7353783 TTTATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTAATTTTATATTTTAA
Found at i:7353787 original size:16 final size:17
Alignment explanation
Indices: 7353749--7353785 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7353739 TTTCATTTTA
7353749 ATTTTA-ATTTTAATTT
1 ATTTTATATTTTAATTT
*
7353765 ATTTTATATTTTGATTT
1 ATTTTATATTTTAATTT
7353782 ATTT
1 ATTT
7353786 ATTTTTACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
ATTTTATATTTTAATTT
Found at i:7353792 original size:22 final size:21
Alignment explanation
Indices: 7353736--7353790 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
7353726 CATGTTTTTC
7353736 TTATTTCATTTTAATTTTAATT
1 TTATTT-ATTTTAATTTTAATT
*
7353758 TTAATTTATTTTATATTTTGA-T
1 TT-ATTTATTTTA-ATTTTAATT
7353780 TTATTTATTTT
1 TTATTTATTTT
7353791 TACCAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 9 0.30
22 11 0.37
23 10 0.33
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (21 bp):
TTATTTATTTTAATTTTAATT
Found at i:7354002 original size:23 final size:23
Alignment explanation
Indices: 7353976--7354044 Score: 63
Period size: 23 Copynumber: 2.9 Consensus size: 23
7353966 TGTATTCAAA
7353976 ATTTTTATTTATTATATATTTT-G
1 ATTTTTATTTATTAT-TATTTTCG
*
7353999 ATTTTGATTTATT-TTATTTTACCG
1 ATTTTTATTTATTATTATTTT--CG
7354023 ATTTTTA-TTAGTTATTTATTTT
1 ATTTTTATTTA-TTA-TTATTTT
7354045 TATTGAGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
21 6 0.16
22 1 0.03
23 15 0.39
24 9 0.24
26 7 0.18
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.68
Consensus pattern (23 bp):
ATTTTTATTTATTATTATTTTCG
Found at i:7360124 original size:120 final size:119
Alignment explanation
Indices: 7359966--7360183 Score: 274
Period size: 120 Copynumber: 1.8 Consensus size: 119
7359956 TCATTCCTGG
* ** * * * *
7359966 TCACTTTATCTTTTAGACTCATGGTTTCATCCCAATCATTTGATCTTAGCTTAGTTCATATCACT
1 TCACTTTATCTTTTAGACTCATAGTTTCATCCCAATCATTCAATCTCAGCTTAGTCCAGATCA-A
** *
7360031 TTTTTGACTTGTAATTTCATCCCAATCATTCATCTTCAACCTCAACTCATCCTAA
65 TTTTTGACACGCAATTTCATCCCAATCATTCATCTTCAACCTCAACTCATCCTAA
** ** *
7360086 TCACTTTATCTTTTAGACTCATAGTTTTGTGTCAATCATTCAATCTCGGCTTAGTCCAGATCAAT
1 TCACTTTATCTTTTAGACTCATAGTTTCATCCCAATCATTCAATCTCAGCTTAGTCCAGATCAAT
* *
7360151 TTTTGACACGCAGTTTCATCCTAATCATTCATC
66 TTTTGACACGCAATTTCATCCCAATCATTCATC
7360184 ATTGACCTTG
Statistics
Matches: 81, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
119 29 0.36
120 52 0.64
ACGTcount: A:0.25, C:0.25, G:0.09, T:0.42
Consensus pattern (119 bp):
TCACTTTATCTTTTAGACTCATAGTTTCATCCCAATCATTCAATCTCAGCTTAGTCCAGATCAAT
TTTTGACACGCAATTTCATCCCAATCATTCATCTTCAACCTCAACTCATCCTAA
Found at i:7360623 original size:121 final size:121
Alignment explanation
Indices: 7359970--7360774 Score: 281
Period size: 121 Copynumber: 6.7 Consensus size: 121
7359960 TCCTGGTCAC
** * * ** * *
7359970 TTTATCTTTTAGACTCATGGTTTCATCCCAATCATTTGATCTTAGCTTAGTTCATATCACTTTT-
1 TTTATCTTTTAGACTCGCGATTTCATCCCAGTCATCCGATCTTAGCTTAGTCCAGATCA-TTTTC
** * ** ***
7360034 TTGACTTG-TAATTTCATCCCAATCATTCATCTTCAACCTCAACTC-ATCCTAATCAC
65 TTGACTTGCT-ATTTCATCTTAGTCATTCATCTTCAACCTCAACTCAATCCTGGTTGT
** ** ** * * * ** *
7360090 TTTATCTTTTAGACTC-ATAGTTTTGTGTCAATCATTCAATCTCGGCTTAGTCCAGATCAATTT-
1 TTTATCTTTTAGACTCGCGA-TTTCATCCCAGTCATCCGATCTTAGCTTAGTCCAGATCATTTTC
** * * * ** * **
7360153 TTGACACGC-AGTTTCATCCTAATCATTCATCATT-GACCTTGACTCAGTTTTGGTTGT
65 TTGACTTGCTA-TTTCATCTTAGTCATTCATC-TTCAACCTCAACTCAATCCTGGTTGT
* ** * * ** * * * *
7360210 TTTATCTCTTAGACTCAAGATTTTAT-CCTGATCATTTGATCTCAGATTATTTCAGATCATTTTC
1 TTTATCTTTTAGACTCGCGATTTCATCCCAG-TCATCCGATCTTAGCTTAGTCCAGATCATTTTC
** * * * ** * *** * ***
7360274 TTGACTCAC-AGTTTCATCTTGGTTATTCATTTTTTACCTCGACTTGGTCTTGGTCAC
65 TTGACTTGCTA-TTTCATCTTAGTCATTCATCTTCAACCTCAACTCAATCCTGGTTGT
* *** *** * * * *
7360331 TTTATTTTTTAGACTTATGATTTCATCTTGGTCATCTGATCTCAGTTTAGTCTAGATCATTTT-T
1 TTTATCTTTTAGACTCGCGATTTCATCCCAGTCATCCGATCTTAGCTTAGTCCAGATCATTTTCT
* * * * * * * * * * *
7360395 CTAACTTG-TGATTTTATCCT-GATCATTCATCTTCGATCTCGACTTAGTCCTGATCGC
66 -TGACTTGCT-ATTTCATCTTAG-TCATTCATCTTCAACCTCAACTCAATCCTGGTTGT
* * * ** * * * *
7360452 TTTAT-TTCTTAGATTAGCAATTTTGTCCCGGTTATCCGATCTCAGTTTAGTCCAGATCATTTTC
1 TTTATCTT-TTAGACTCGCGATTTCATCCCAGTCATCCGATCTTAGCTTAGTCCAGATCATTTTC
* *
7360516 TTGACTTGCTATTTCATCTTAGTTATTCATCTTCAACCTCAACTCAATCTTGGTTGT
65 TTGACTTGCTATTTCATCTTAGTCATTCATCTTCAACCTCAACTCAATCCTGGTTGT
* * * * *
7360573 TTTAT-TTCTTAGACTCGCGATTTCATCCCAGTCAAT-CTATTTTAGCTTAGTTCAAATTATTTT
1 TTTATCTT-TTAGACTCGCGATTTCATCCCAGTC-ATCCGATCTTAGCTTAGTCCAGATCATTTT
* * ** * ** * * * *
7360636 CCTAACTCACAATTTTGTCTTAGTCATTCATTTTTAACCTCGACTCGATCCTGGTTGT
64 CTTGACTTGCTATTTCATCTTAGTCATTCATCTTCAACCTCAACTCAATCCTGGTTGT
* * *** * *
7360694 TTTATCTTTTAGACTTGCGATTTTATCTTGGTCATCCGATCTTAGCTTAATCTAGATCATTTTCT
1 TTTATCTTTTAGACTCGCGATTTCATCCCAGTCATCCGATCTTAGCTTAGTCCAGATCATTTTCT
* * *
7360759 AGACTTGTTGTTTCAT
66 TGACTTGCTATTTCAT
7360775 TTCGACCATC
Statistics
Matches: 507, Mismatches: 157, Indels: 41
0.72 0.22 0.06
Matches are distributed among these distances:
118 1 0.00
119 37 0.07
120 103 0.20
121 357 0.70
122 9 0.02
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (121 bp):
TTTATCTTTTAGACTCGCGATTTCATCCCAGTCATCCGATCTTAGCTTAGTCCAGATCATTTTCT
TGACTTGCTATTTCATCTTAGTCATTCATCTTCAACCTCAACTCAATCCTGGTTGT
Found at i:7360841 original size:31 final size:31
Alignment explanation
Indices: 7360799--7360859 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
7360789 CTTGGCTCAA
*
7360799 TCCAGATCATTTCCCTGACTTTTCGGTCTCG
1 TCCAAATCATTTCCCTGACTTTTCGGTCTCG
*** *
7360830 TCCAAATCATTTTTTTGACTTTTTGGTCTC
1 TCCAAATCATTTCCCTGACTTTTCGGTCTC
7360860 AGCTTAGTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.15, C:0.26, G:0.13, T:0.46
Consensus pattern (31 bp):
TCCAAATCATTTCCCTGACTTTTCGGTCTCG
Found at i:7360903 original size:37 final size:37
Alignment explanation
Indices: 7360833--7360905 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
7360823 GGTCTCGTCC
*
7360833 AAATCATTTTTTTGACTTTTTGGTCTCAGCTTAGTCT
1 AAATCATTTTTTTGACTTTGTGGTCTCAGCTTAGTCT
*
7360870 AAATCATTTTTTTAGAC-TTGTGG-CTCGGTCTTAGTC
1 AAATCATTTTTTT-GACTTTGTGGTCTCAG-CTTAGTC
7360906 ATTCTTGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 4 0.12
37 25 0.78
38 3 0.09
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.48
Consensus pattern (37 bp):
AAATCATTTTTTTGACTTTGTGGTCTCAGCTTAGTCT
Found at i:7361103 original size:3 final size:3
Alignment explanation
Indices: 7361090--7361199 Score: 145
Period size: 3 Copynumber: 37.3 Consensus size: 3
7361080 CTATAGTATA
* * *
7361090 TAT TA- TAT TAT TA- TAC TAT CAT TAT TAT TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7361136 TAT TAT TAT GAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TATT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
7361181 TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
7361200 TTTCATTCTT
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
2 6 0.06
3 86 0.91
4 2 0.02
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7362053 original size:17 final size:16
Alignment explanation
Indices: 7362010--7362043 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7362000 TCCATTTTAA
*
7362010 TTTTAATTTTTGATTT
1 TTTTGATTTTTGATTT
7362026 TTTTGATTTTTTGATTT
1 TTTTGA-TTTTTGATTT
7362043 T
1 T
7362044 GATTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (16 bp):
TTTTGATTTTTGATTT
Found at i:7363060 original size:29 final size:30
Alignment explanation
Indices: 7363015--7363100 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
7363005 CAATCGAAAG
7363015 TTCAATTGGATGAAAATAG-TATTTAAGGA
1 TTCAATTGGATGAAAATAGATATTTAAGGA
* *
7363044 TTTAATTAGGA-GAAAATAGATATTTAATGA
1 TTCAATT-GGATGAAAATAGATATTTAAGGA
*
7363074 TTCAATT-GATGCGAAATAGAATATTTA
1 TTCAATTGGATG-AAAATAG-ATATTTA
7363101 TAACTTGATT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
28 2 0.04
29 15 0.31
30 24 0.50
31 7 0.15
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.36
Consensus pattern (30 bp):
TTCAATTGGATGAAAATAGATATTTAAGGA
Found at i:7363577 original size:19 final size:17
Alignment explanation
Indices: 7363542--7363590 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
7363532 AATACTTTTT
*
7363542 TTGAGTTTATCTTAGTTTA
1 TTGATTTTAT-TTAG-TTA
*
7363561 TTTATTTATATTTAGTTA
1 TTGATTT-TATTTAGTTA
7363579 TTGATTTTATTT
1 TTGATTTTATTT
7363591 TTAATAGGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 9 0.35
19 9 0.35
20 3 0.12
ACGTcount: A:0.22, C:0.02, G:0.10, T:0.65
Consensus pattern (17 bp):
TTGATTTTATTTAGTTA
Found at i:7363941 original size:13 final size:14
Alignment explanation
Indices: 7363916--7363946 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
7363906 ATGAGTAAAA
7363916 ATTTTAGGTTCTTG
1 ATTTTAGGTTCTTG
7363930 ATTTTA-GTTCTTG
1 ATTTTAGGTTCTTG
7363943 ATTT
1 ATTT
7363947 CTTTTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.16, C:0.06, G:0.16, T:0.61
Consensus pattern (14 bp):
ATTTTAGGTTCTTG
Found at i:7364723 original size:11 final size:11
Alignment explanation
Indices: 7364693--7364798 Score: 61
Period size: 11 Copynumber: 9.0 Consensus size: 11
7364683 ATGTCATTGC
7364693 ATGATATTTTT
1 ATGATATTTTT
* *
7364704 ATTATTTTTTT
1 ATGATATTTTT
7364715 ATGA-ATTTTTT
1 ATGATA-TTTTT
7364726 GCATGATATTTTT
1 --ATGATATTTTT
*
7364739 ATGATTCTCTTTT
1 ATGA-TAT-TTTT
* *
7364752 ATGATGTTTTA
1 ATGATATTTTT
*
7364763 ATGATTTTTTTTCT
1 ATGA--TATTTT-T
*
7364777 ACGATATTTTT
1 ATGATATTTTT
*
7364788 ATAATATTTTT
1 ATGATATTTTT
7364799 GTATGAAACT
Statistics
Matches: 73, Mismatches: 13, Indels: 18
0.70 0.12 0.17
Matches are distributed among these distances:
11 38 0.52
12 9 0.12
13 22 0.30
14 4 0.05
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.63
Consensus pattern (11 bp):
ATGATATTTTT
Found at i:7364741 original size:24 final size:24
Alignment explanation
Indices: 7364710--7364804 Score: 70
Period size: 24 Copynumber: 3.9 Consensus size: 24
7364700 TTTTATTATT
7364710 TTTTTATGAATTTTTTGCATGATA
1 TTTTTATGAATTTTTTGCATGATA
* *
7364734 TTTTTATG-ATTCTCTTT-TATGATG
1 TTTTTATGAATT-T-TTTGCATGATA
* * * *
7364758 TTTTAATGATTTTTTTTCTACGATA
1 TTTTTATGAATTTTTTGC-ATGATA
*
7364783 TTTTTAT-AATATTTTTGTATGA
1 TTTTTATGAAT-TTTTTGCATGA
7364805 AACTATTTTA
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
23 6 0.11
24 27 0.51
25 20 0.38
ACGTcount: A:0.23, C:0.05, G:0.11, T:0.61
Consensus pattern (24 bp):
TTTTTATGAATTTTTTGCATGATA
Found at i:7364767 original size:35 final size:35
Alignment explanation
Indices: 7364649--7364773 Score: 101
Period size: 35 Copynumber: 3.5 Consensus size: 35
7364639 TGGATGAGTT
* * * *
7364649 TTTTTAATGATATTTTTGCATAATTTTATTATAAATG
1 TTTTGAATGATATTTTT--ATGATTTTTTTATGAATG
* * * *
7364686 TCATTGCATGATATTTTTATTATTTTTTTATGAATT
1 T-TTTGAATGATATTTTTATGATTTTTTTATGAATG
*
7364722 TTTTGCATGATATTTTTATGATTCTCTTTTATG-ATG
1 TTTTGAATGATATTTTTATGATT-T-TTTTATGAATG
*
7364758 TTTT-AATGATTTTTTT
1 TTTTGAATGATATTTTT
7364774 TCTACGATAT
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
35 30 0.41
36 22 0.30
37 8 0.11
38 13 0.18
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.61
Consensus pattern (35 bp):
TTTTGAATGATATTTTTATGATTTTTTTATGAATG
Found at i:7365818 original size:51 final size:52
Alignment explanation
Indices: 7365718--7365819 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 52
7365708 TATGTTAGAA
* * * * *
7365718 TCTTACCATTCTTTTTGTATAGAAGACCTTATAATAAGACACATTAAGGGAT
1 TCTTACCATTCCTTTTGTATAAAAGACCTCAAAATAAGACACATGAAGGGAT
* *
7365770 TCTTACTATTCCTTTTGTATAAAAG-GCTCAAAATAAGACACATGAAGGGA
1 TCTTACCATTCCTTTTGTATAAAAGACCTCAAAATAAGACACATGAAGGGA
7365820 CATCTTGTAC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
51 21 0.49
52 22 0.51
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (52 bp):
TCTTACCATTCCTTTTGTATAAAAGACCTCAAAATAAGACACATGAAGGGAT
Found at i:7368166 original size:15 final size:15
Alignment explanation
Indices: 7368126--7368174 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
7368116 ATAGGAAAAT
7368126 TTTTAATTTTAATTTGA
1 TTTTAATTTT-ATTT-A
*
7368143 -TTTGA-TTTATTTA
1 TTTTAATTTTATTTA
7368156 TTTTAATTTTATTTA
1 TTTTAATTTTATTTA
7368171 TTTT
1 TTTT
7368175 CAAAGTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
13 1 0.04
14 8 0.29
15 15 0.54
16 4 0.14
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (15 bp):
TTTTAATTTTATTTA
Found at i:7368812 original size:18 final size:18
Alignment explanation
Indices: 7368800--7368837 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
7368790 CTATTTTCTA
7368800 TTTT-GATTTTATTTTAT
1 TTTTAGATTTTATTTTAT
7368817 TTTTAGA-TTT-TTTTAT
1 TTTTAGATTTTATTTTAT
7368833 TTTTA
1 TTTTA
7368838 CTTATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 11 0.55
17 7 0.35
18 2 0.10
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTTAGATTTTATTTTAT
Found at i:7368848 original size:16 final size:15
Alignment explanation
Indices: 7368808--7368874 Score: 64
Period size: 16 Copynumber: 4.3 Consensus size: 15
7368798 TATTTTGATT
7368808 TTATTTTATTTTTAGA
1 TTATTTTATTTTTA-A
* *
7368824 TTTTTTTATTTTTAC
1 TTATTTTATTTTTAA
*
7368839 TTATTATTATTATT-A
1 TTATT-TTATTTTTAA
*
7368854 TTATTTTCATCTTTAA
1 TTATTTT-ATTTTTAA
7368870 TTATT
1 TTATT
7368875 ATTTTACTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
14 2 0.05
15 13 0.32
16 26 0.63
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (15 bp):
TTATTTTATTTTTAA
Found at i:7370390 original size:14 final size:15
Alignment explanation
Indices: 7370355--7370394 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
7370345 TTGATGGATC
7370355 AAAAGAAAATAAAATG
1 AAAAGAAAA-AAAATG
7370371 AAAAGAAAAAAAA-G
1 AAAAGAAAAAAAATG
*
7370385 ATAAGAAAAA
1 AAAAGAAAAA
7370395 GCTGTGCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 4 0.17
16 9 0.39
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (15 bp):
AAAAGAAAAAAAATG
Found at i:7371649 original size:36 final size:36
Alignment explanation
Indices: 7371577--7371649 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
7371567 TTTTAAAAAA
* * * **
7371577 TTTCAATTGTGAATCTTTTAATTTTGGATATTAATC
1 TTTCAAATGTGAATATTTGAATTTTGGATAGAAATC
*
7371613 TTTCAAATGTGAATATTTGAATTTTGGATGGAAATC
1 TTTCAAATGTGAATATTTGAATTTTGGATAGAAATC
7371649 T
1 T
7371650 ATAAAATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (36 bp):
TTTCAAATGTGAATATTTGAATTTTGGATAGAAATC
Found at i:7371801 original size:22 final size:20
Alignment explanation
Indices: 7371776--7371821 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
7371766 TTTACAATTA
7371776 TGAAATTTTAAAATTTCATTTG
1 TGAAATTTTAAAA-TT-ATTTG
* *
7371798 TGAATTTTTGAAATTATTTG
1 TGAAATTTTAAAATTATTTG
7371818 TGAA
1 TGAA
7371822 TCATTACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 2 0.09
22 11 0.50
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.50
Consensus pattern (20 bp):
TGAAATTTTAAAATTATTTG
Found at i:7371873 original size:56 final size:56
Alignment explanation
Indices: 7371778--7371974 Score: 195
Period size: 56 Copynumber: 3.5 Consensus size: 56
7371768 TACAATTATG
* * *
7371778 AAATTTTAAAATTTCATTTGTGAATTTTTGAAATTATTTGTGAATCATTACAATTGCA
1 AAATTTT--AATTTCATTTGTGAATCTTTAAAATTATTTGTGAATCATTATAATTGCA
* *
7371836 AAATTTTAATTTCATTTGAGAATCTTTAAAATTATTTGTGAATC-TCTATAATTGCG
1 AAATTTTAATTTCATTTGTGAATCTTTAAAATTATTTGTGAATCAT-TATAATTGCA
* * * **
7371892 AAATTTAGAAATTTTATTTGTGAATCTTTAAAACTAATTT-CAAATCATTATAATTGCA
1 AAATTT--TAATTTCATTTGTGAATCTTTAAAA-TTATTTGTGAATCATTATAATTGCA
* * *
7371950 AATTTTTTATTTC--TTATGAATCTTT
1 AAATTTTAATTTCATTTGTGAATCTTT
7371975 GAACTCTTGC
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
54 11 0.09
55 1 0.01
56 52 0.44
58 47 0.40
59 6 0.05
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.48
Consensus pattern (56 bp):
AAATTTTAATTTCATTTGTGAATCTTTAAAATTATTTGTGAATCATTATAATTGCA
Found at i:7371888 original size:20 final size:20
Alignment explanation
Indices: 7371849--7371888 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7371839 TTTTAATTTC
*
7371849 ATTTGAGAATCTTTAAAATT
1 ATTTGAGAATCTCTAAAATT
* *
7371869 ATTTGTGAATCTCTATAATT
1 ATTTGAGAATCTCTAAAATT
7371889 GCGAAATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.47
Consensus pattern (20 bp):
ATTTGAGAATCTCTAAAATT
Found at i:7371944 original size:58 final size:57
Alignment explanation
Indices: 7371777--7371954 Score: 202
Period size: 56 Copynumber: 3.1 Consensus size: 57
7371767 TTACAATTAT
* * *
7371777 GAAATTTTAAAATTTCATTTGTGAATTTTTGAAATTATTTGTGAATCATTACAATTGC
1 GAAA-TTTAAAATTTCATTTGTGAATCTTTAAAATTATTTGTGAATCATTATAATTGC
* * *
7371835 AAAATTT-TAATTTCATTTGAGAATCTTTAAAATTATTTGTGAATC-TCTATAATTGC
1 GAAATTTAAAATTTCATTTGTGAATCTTTAAAATTATTTGTGAATCAT-TATAATTGC
* * **
7371891 GAAATTTAGAAATTTTATTTGTGAATCTTTAAAACTAATTT-CAAATCATTATAATTGC
1 GAAATTTA-AAATTTCATTTGTGAATCTTTAAAA-TTATTTGTGAATCATTATAATTGC
7371949 -AAATTT
1 GAAATTT
7371955 TTTATTTCTT
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
55 1 0.01
56 48 0.47
57 9 0.09
58 38 0.37
59 6 0.06
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.46
Consensus pattern (57 bp):
GAAATTTAAAATTTCATTTGTGAATCTTTAAAATTATTTGTGAATCATTATAATTGC
Found at i:7371992 original size:36 final size:35
Alignment explanation
Indices: 7371945--7372019 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 35
7371935 ATCATTATAA
* *
7371945 TTGCAAATTTTTTATTTCTTATG-AATCTTTGAACTC
1 TTGCAAATTTTTAAATT-TT-TGAAATCTTTGAACTC
7371981 TTGCAAATTTTTAAATTTTTGCAAATCTTTGAACTC
1 TTGCAAATTTTTAAATTTTTG-AAATCTTTGAACTC
7372017 TTG
1 TTG
7372020 TGAATCTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 2 0.06
35 2 0.06
36 31 0.89
ACGTcount: A:0.27, C:0.13, G:0.09, T:0.51
Consensus pattern (35 bp):
TTGCAAATTTTTAAATTTTTGAAATCTTTGAACTC
Found at i:7372025 original size:18 final size:18
Alignment explanation
Indices: 7371968--7372030 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 18
7371958 ATTTCTTATG
7371968 AATCTTTGAACTCTTGCA
1 AATCTTTGAACTCTTGCA
* * * *
7371986 AATTTTTAAATTTTTGCA
1 AATCTTTGAACTCTTGCA
**
7372004 AATCTTTGAACTCTTGTG
1 AATCTTTGAACTCTTGCA
7372022 AATCTTTGA
1 AATCTTTGA
7372031 TTGAATTGTT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (18 bp):
AATCTTTGAACTCTTGCA
Found at i:7372070 original size:40 final size:40
Alignment explanation
Indices: 7371968--7372070 Score: 97
Period size: 40 Copynumber: 2.7 Consensus size: 40
7371958 ATTTCTTATG
* * *
7371968 AATCTTTGAACTCTTGC-AA-ATTT--TTAAATTTTTGCA
1 AATCTTTGAACACTTGCGAATATTTGATTGAATTGTTGCA
* * * *
7372004 AATCTTTGAACTCTTGTGAATCTTTGATTGAATTGTTGGA
1 AATCTTTGAACACTTGCGAATATTTGATTGAATTGTTGCA
* *
7372044 AATCTTTGATCACTTGCGTATATTTGA
1 AATCTTTGAACACTTGCGAATATTTGA
7372071 ATTTTTACAA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
36 16 0.30
37 2 0.04
38 3 0.06
40 32 0.60
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.46
Consensus pattern (40 bp):
AATCTTTGAACACTTGCGAATATTTGATTGAATTGTTGCA
Found at i:7372111 original size:18 final size:18
Alignment explanation
Indices: 7372090--7372146 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
7372080 ATTTTTACAA
*
7372090 TCTTGCGAATCTTTAAAC
1 TCTTGCGAATCATTAAAC
* * *
7372108 TCTTGCAAATAATTAAAT
1 TCTTGCGAATCATTAAAC
* *
7372126 TCTTGTGAATCGTTAAAC
1 TCTTGCGAATCATTAAAC
7372144 TCT
1 TCT
7372147 CATGAATCTT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.40
Consensus pattern (18 bp):
TCTTGCGAATCATTAAAC
Found at i:7373732 original size:24 final size:25
Alignment explanation
Indices: 7373689--7373842 Score: 122
Period size: 24 Copynumber: 6.3 Consensus size: 25
7373679 TAAAATTTTT
* *
7373689 ATATTTTTGTATGAAATTTATTATG
1 ATATTTTTGCATGATATTTATTATG
*
7373714 ATCTTTTTGCATGAT-TTTATTATG
1 ATATTTTTGCATGATATTTATTATG
* *
7373738 ATATTATTACATGATATTT-TTGCATG
1 ATATTTTTGCATGATATTTATT--ATG
* *
7373764 A-ATTTTT-TAAGATATTTATTATG
1 ATATTTTTGCATGATATTTATTATG
* * *
7373787 ATATTTTTGCATAAT-TTTGTTATT
1 ATATTTTTGCATGATATTTATTATG
* * *
7373811 ATATTATTGCATAATATTT-TAATG
1 ATATTTTTGCATGATATTTATTATG
*
7373835 ATTTTTTT
1 ATATTTTT
7373843 ATTTTTTTGC
Statistics
Matches: 103, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
23 4 0.04
24 67 0.65
25 28 0.27
26 4 0.04
ACGTcount: A:0.29, C:0.04, G:0.10, T:0.57
Consensus pattern (25 bp):
ATATTTTTGCATGATATTTATTATG
Found at i:7373758 original size:37 final size:35
Alignment explanation
Indices: 7373691--7373830 Score: 140
Period size: 36 Copynumber: 3.8 Consensus size: 35
7373681 AAATTTTTAT
* *
7373691 ATTTTTGTATGAAATTTATT-ATGATCTTTTTGCATG
1 ATTTTT-TATGATA-TTATTCATGATATTTTTGCATG
7373727 ATTTTATTATGATATTATTACATGATATTTTTGCATG
1 ATTTT-TTATGATATTATT-CATGATATTTTTGCATG
* *
7373764 AATTTTTTAAGATATTTATT-ATGATATTTTTGCATA
1 -ATTTTTTATGATA-TTATTCATGATATTTTTGCATG
* *
7373800 ATTTTGTTATTATATTATTGCATAATATTTT
1 ATTTT-TTATGATATTATT-CATGATATTTT
7373831 AATGATTTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
35 15 0.17
36 32 0.36
37 32 0.36
38 10 0.11
ACGTcount: A:0.29, C:0.04, G:0.10, T:0.56
Consensus pattern (35 bp):
ATTTTTTATGATATTATTCATGATATTTTTGCATG
Found at i:7378962 original size:12 final size:12
Alignment explanation
Indices: 7378930--7378963 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7378920 TCGAGTAGGT
*
7378930 TTTAAGATTTTG
1 TTTAAGGTTTTG
7378942 TTTAAGGTTTTG
1 TTTAAGGTTTTG
*
7378954 TTTAGGGTTT
1 TTTAAGGTTT
7378964 AAGTTTAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.59
Consensus pattern (12 bp):
TTTAAGGTTTTG
Found at i:7380920 original size:136 final size:135
Alignment explanation
Indices: 7380751--7381006 Score: 320
Period size: 135 Copynumber: 1.9 Consensus size: 135
7380741 CTCAAGAGGG
* * * *
7380751 TCAAATTATGAAAATACCCTTGAAAGGTGTTTTGATAATTT-TACCATTTTTGAGGA-GCAATAA
1 TCAAATTATGAAAATACCCTTGAAAGGTATTTTGATAATTTCAACC-TTTCT-AAGATGCAATAA
* * * * * *
7380814 AGGTTTTCAATGCATCAAAATTTATGGAATAATATTAAAACATGATTTGGAGTTTTTTACGACCT
64 AGG-TTTCAATGCATCAAAATTCATAGAATAATATTAAAAAAGGATCTAGAGTTTTTTACGACCT
7380879 CAAAAATA
128 CAAAAATA
* ***
7380887 TCAAATTATGAAAATACCCTT-AAAGGGTATTTTGGTAATTTCAACCTTTCTAAGATGCAATCTT
1 TCAAATTATGAAAATACCCTTGAAA-GGTATTTTGATAATTTCAACCTTTCTAAGATGCAATAAA
*
7380951 GGTTTCAATGTATCAAAATTCATAGAATAATATTAAAAAAGGATCTAGAGTTTTTT
65 GGTTTCAATGCATCAAAATTCATAGAATAATATTAAAAAAGGATCTAGAGTTTTTT
7381007 CACAAAAAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
135 53 0.52
136 46 0.45
137 3 0.03
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (135 bp):
TCAAATTATGAAAATACCCTTGAAAGGTATTTTGATAATTTCAACCTTTCTAAGATGCAATAAAG
GTTTCAATGCATCAAAATTCATAGAATAATATTAAAAAAGGATCTAGAGTTTTTTACGACCTCAA
AAATA
Found at i:7381465 original size:18 final size:20
Alignment explanation
Indices: 7381442--7381478 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7381432 TTCTTATTTA
7381442 ATTTT-AATT-TTAAAATAT
1 ATTTTAAATTATTAAAATAT
7381460 ATTTTAAATTATTAAAATA
1 ATTTTAAATTATTAAAATA
7381479 CCAATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTTAAATTATTAAAATAT
Done.