Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 42 of 121
Found at i:7384461 original size:10 final size:10
Alignment explanation
Indices: 7384441--7384477 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
7384431 TTAAATTTAC
7384441 AAAAAA-AAT
1 AAAAAATAAT
*
7384450 AAAAAATGAT
1 AAAAAATAAT
7384460 -AAAAATAAT
1 AAAAAATAAT
7384469 AAAAAATAA
1 AAAAAATAA
7384478 GAAATGAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 14 0.58
10 10 0.42
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:7387820 original size:18 final size:18
Alignment explanation
Indices: 7387792--7387834 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7387782 AGAGGCAAAG
*
7387792 AAAAA-AAAAGGTAATCA
1 AAAAAGAAAAGGCAATCA
* *
7387809 AGAAAGAAAAGGCATTCA
1 AAAAAGAAAAGGCAATCA
7387827 AAAAAGAA
1 AAAAAGAA
7387835 TAAGATGTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.67, C:0.07, G:0.16, T:0.09
Consensus pattern (18 bp):
AAAAAGAAAAGGCAATCA
Found at i:7389422 original size:17 final size:17
Alignment explanation
Indices: 7389381--7389422 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
7389371 ATTAGGAAGC
7389381 AAAAAAAAAAAAATTCG
1 AAAAAAAAAAAAATTCG
* * *
7389398 AGAGAAAAAAAAATTTG
1 AAAAAAAAAAAAATTCG
7389415 AAAAAAAA
1 AAAAAAAA
7389423 TCTTTCTTTA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (17 bp):
AAAAAAAAAAAAATTCG
Found at i:7391835 original size:84 final size:84
Alignment explanation
Indices: 7391709--7392014 Score: 294
Period size: 84 Copynumber: 3.7 Consensus size: 84
7391699 AGTTTTTTGA
* * **
7391709 AATTTGTTTTCA-TGTCAAGATTTATAAGACCTTTGAGCATAGTCTCTAAGTCCTCCGTTCAAGA
1 AATTTGTTTT-AGTGTCAAGATTCATAAGACCTCTGAGCATAGTCTCTAAGTCCTCCGGGCAAGA
*
7391773 TTTGTAAGTTTTTCGAGCTG
65 TTCGTAAGTTTTTCGAGCTG
* * * * **
7391793 AATTTGTTTTTGTGTCAAGATTCATAGGACCTCTGGGTATAGTCTCTAAGTCCTTTGGGCAAGAT
1 AATTTGTTTTAGTGTCAAGATTCATAAGACCTCTGAGCATAGTCTCTAAGTCCTCCGGGCAAGAT
*
7391858 TCGTAAGTTTTTCGAGTTG
66 TCGTAAGTTTTTCGAGCTG
* * * ** * * ** * *
7391877 AATCTATTTTAGTATCAAGATTTGTAAGACCTCTAAGCATAATCTCTAAGTATTCTGGGTAAGAT
1 AATTTGTTTTAGTGTCAAGATTCATAAGACCTCTGAGCATAGTCTCTAAGTCCTCCGGGCAAGAT
* * *
7391942 T-TTAAG-TCTTCTGAGCTA
66 TCGTAAGTTTTTC-GAGCTG
* * * * *
7391960 AATTTGTTATAATGTCAAGATTTATAAAACCTCTGAACATAGTCTCTAAGTCCTC
1 AATTTGTTTTAGTGTCAAGATTCATAAGACCTCTGAGCATAGTCTCTAAGTCCTC
7392015 TAAGTAGGTT
Statistics
Matches: 177, Mismatches: 43, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
82 4 0.02
83 51 0.29
84 122 0.69
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (84 bp):
AATTTGTTTTAGTGTCAAGATTCATAAGACCTCTGAGCATAGTCTCTAAGTCCTCCGGGCAAGAT
TCGTAAGTTTTTCGAGCTG
Found at i:7391964 original size:21 final size:21
Alignment explanation
Indices: 7391923--7391964 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7391913 GCATAATCTC
*
7391923 TAAGTATTCTGGGTAAGATTT
1 TAAGTATTCTGGCTAAGATTT
*
7391944 TAAGTCTTCTGAGCTAA-ATTT
1 TAAGTATTCTG-GCTAAGATTT
7391965 GTTATAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (21 bp):
TAAGTATTCTGGCTAAGATTT
Found at i:7392005 original size:167 final size:167
Alignment explanation
Indices: 7391723--7392092 Score: 370
Period size: 167 Copynumber: 2.2 Consensus size: 167
7391713 TGTTTTCATG
* * * * * * *
7391723 TCAAGATTTATAAGACCTTTGAGCATAGTCTCTAAGTCCTCCGTTCAAGATTTGTAAGTTTTTCG
1 TCAAGATTTGTAAGACCTCTAAGCATAATCTCTAAGTACTCCGGTCAAGATTTGTAAGTTTCTCG
* * ** ** *** * **
7391788 AGCTGAATTTGTTTTTGTGTCAAGATTCATAGGACCTCTGGGTATAGTCTCTAAGTCCTTTGGGC
66 AGCTAAATTTGTTATAATGTCAAGATTCATAAAACCTCTGAACATAGTCTCTAAGTCCTCTAAG-
* * * * *
7391853 AAGATTCGTAAGTTTTTCGAGTTGAATCTATTTTAGTA
130 AAGATTCGTAAATCTTTCAAGCTAAATCTATTTTAGTA
* *
7391891 TCAAGATTTGTAAGACCTCTAAGCATAATCTCTAAGTATTCTGGGT-AAGATTT-TAAGTCTTCT
1 TCAAGATTTGTAAGACCTCTAAGCATAATCTCTAAGTACTC-CGGTCAAGATTTGTAAGT-TTCT
*
7391954 -GAGCTAAATTTGTTATAATGTCAAGATTTATAAAACCTCTGAACATAGTCTCTAAGTCCTCTAA
64 CGAGCTAAATTTGTTATAATGTCAAGATTCATAAAACCTCTGAACATAGTCTCTAAGTCCTCTAA
* * * * *
7392018 GTAGGTTTGTAAATCTTTCAAGCTAAATCTGTTTTATTA
129 GAAGATTCGTAAATCTTTCAAGCTAAATCTATTTTAGTA
* * *
7392057 TCAAGATTTGCAAGACTTC-AAGCATAATTTCTAAGT
1 TCAAGATTTGTAAGACCTCTAAGCATAATCTCTAAGT
7392093 CCTTCAGGCA
Statistics
Matches: 165, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
165 16 0.10
166 45 0.27
167 57 0.35
168 45 0.27
169 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (167 bp):
TCAAGATTTGTAAGACCTCTAAGCATAATCTCTAAGTACTCCGGTCAAGATTTGTAAGTTTCTCG
AGCTAAATTTGTTATAATGTCAAGATTCATAAAACCTCTGAACATAGTCTCTAAGTCCTCTAAGA
AGATTCGTAAATCTTTCAAGCTAAATCTATTTTAGTA
Found at i:7392191 original size:27 final size:27
Alignment explanation
Indices: 7392159--7392212 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7392149 TAAGGAGATA
* * *
7392159 AGCTTTTTAGTTTGATTTTTAAAGTTG
1 AGCTTTTCAATTTAATTTTTAAAGTTG
7392186 AGCTTTTCAATTTAATTTTTAAAGTTG
1 AGCTTTTCAATTTAATTTTTAAAGTTG
7392213 TCAAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.54
Consensus pattern (27 bp):
AGCTTTTCAATTTAATTTTTAAAGTTG
Found at i:7392258 original size:8 final size:8
Alignment explanation
Indices: 7392236--7392285 Score: 55
Period size: 8 Copynumber: 5.9 Consensus size: 8
7392226 AGAGGAGTTT
7392236 AAAAAAAGC
1 AAAAAAA-C
*
7392245 ACAAAAAC
1 AAAAAAAC
7392253 AAAAAAATAC
1 -AAAAAA-AC
7392263 AAAAAAAC
1 AAAAAAAC
*
7392271 AAAAAAAT
1 AAAAAAAC
7392279 AAAAAAA
1 AAAAAAA
7392286 AATGAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
8 17 0.47
9 17 0.47
10 2 0.06
ACGTcount: A:0.84, C:0.10, G:0.02, T:0.04
Consensus pattern (8 bp):
AAAAAAAC
Found at i:7392264 original size:10 final size:10
Alignment explanation
Indices: 7392247--7392308 Score: 62
Period size: 9 Copynumber: 6.6 Consensus size: 10
7392237 AAAAAAGCAC
7392247 AAAA-ACAAA
1 AAAATACAAA
7392256 AAAATAC-AA
1 AAAATACAAA
7392265 AAAA-ACAAA
1 AAAATACAAA
*
7392274 AAAATAAAAA
1 AAAATACAAA
7392284 AAAATGA-AAA
1 AAAAT-ACAAA
*
7392294 AAAAT-GAAA
1 AAAATACAAA
7392303 AAAATA
1 AAAATA
7392309 ATAAAATAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
8 2 0.04
9 24 0.52
10 19 0.41
11 1 0.02
ACGTcount: A:0.84, C:0.05, G:0.03, T:0.08
Consensus pattern (10 bp):
AAAATACAAA
Found at i:7392287 original size:18 final size:18
Alignment explanation
Indices: 7392247--7392322 Score: 80
Period size: 18 Copynumber: 4.0 Consensus size: 18
7392237 AAAAAAGCAC
*
7392247 AAAAACAAAAAAATACAA
1 AAAAACAAAAAAATAAAA
7392265 AAAAACAAAAAAATAAAA
1 AAAAACAAAAAAATAAAA
*
7392283 AAAAATGAAAAAAAATGAAAA
1 AAAAA--CAAAAAAAT-AAAA
* *
7392304 AAATAATAAAATAATAAAA
1 AAA-AACAAAAAAATAAAA
7392323 GCAAAAAACA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
18 22 0.44
19 4 0.08
20 15 0.30
21 7 0.14
22 2 0.04
ACGTcount: A:0.83, C:0.04, G:0.03, T:0.11
Consensus pattern (18 bp):
AAAAACAAAAAAATAAAA
Found at i:7392314 original size:10 final size:9
Alignment explanation
Indices: 7392253--7392322 Score: 70
Period size: 10 Copynumber: 7.3 Consensus size: 9
7392243 GCACAAAAAC
7392253 AAAAAAATA
1 AAAAAAATA
*
7392262 CAAAAAAA-C
1 -AAAAAAATA
7392271 AAAAAAATAA
1 AAAAAAAT-A
7392281 AAAAAAATGA
1 AAAAAAAT-A
*
7392291 AAAAAAATG
1 AAAAAAATA
7392300 AAAAAAATA
1 AAAAAAATA
7392309 ATAAAATAATA
1 A-AAAA-AATA
7392320 AAA
1 AAA
7392323 GCAAAAAACA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
8 7 0.14
9 9 0.18
10 30 0.59
11 5 0.10
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11
Consensus pattern (9 bp):
AAAAAAATA
Found at i:7393991 original size:19 final size:18
Alignment explanation
Indices: 7393949--7393991 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
7393939 TTTTAAATTT
7393949 GGAAAAAATAAAAAATGA
1 GGAAAAAATAAAAAATGA
**
7393967 TAAAAATAATAAAAAATGA
1 GGAAAA-AATAAAAAATGA
7393986 GGAAAA
1 GGAAAA
7393992 GAAAATCTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (18 bp):
GGAAAAAATAAAAAATGA
Found at i:7394452 original size:9 final size:9
Alignment explanation
Indices: 7394438--7394464 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7394428 AAAAAAATAT
7394438 AATAATAAA
1 AATAATAAA
7394447 AATAATAAA
1 AATAATAAA
7394456 AATAATAAA
1 AATAATAAA
7394465 TAAGGGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AATAATAAA
Found at i:7401012 original size:40 final size:39
Alignment explanation
Indices: 7400935--7401013 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 39
7400925 AAATACAAAT
* *
7400935 CGTTACAAATAAAATAAGTTTTTGCAACAATAATTTTTTA
1 CGTTACAAATAAAAAAAATTTTTGCAACAAT-ATTTTTTA
7400975 CGTTACAAATATAATAAAAATTTTT-CTAACAAT-TTTTTT
1 CGTTACAAATA-AA-AAAAATTTTTGC-AACAATATTTTTT
7401014 GTTGTTGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
40 17 0.50
41 3 0.09
42 14 0.41
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (39 bp):
CGTTACAAATAAAAAAAATTTTTGCAACAATATTTTTTA
Found at i:7401012 original size:131 final size:129
Alignment explanation
Indices: 7400870--7402133 Score: 717
Period size: 129 Copynumber: 9.7 Consensus size: 129
7400860 ATAGAATTTG
* ** * * *
7400870 TAACAACTTTTTTTGTCATTATATAAAAATAATAAAAAATAAATAAAGCAACGACAAATACAAAT
1 TAACAA-TTTTTTTGTCATTGTATAAAAATTTTAAAAAATAAATTAAGCAACGAC-ATTAAAAAT
* * * **
7400935 CGTTACAAATAAAATAAGTTTTTGCAACAATAATTTTTTA-CGTTACAAATATAATAAAAATTTT
64 CATTGCAAATAAAACAAGTTTTCACAACAATAATTTTTTATCGTTACAAATATAATAAAAA-TTT
7400999 TC
128 TC
** * ** * **
7401001 TAACAATTTTTTTGTTGTTGTATAAAATTTTTAAAAAATAAATTAAATAATGACATTAAAAATTT
1 TAACAATTTTTTTGTCATTGTATAAAAATTTTAAAAAATAAATTAAGCAACGACATTAAAAATCA
* * * * * * * * *
7401066 TTGCTAATAAAACAAGTTTTCTCAACACTAATATTTTATTGTTATAAATGTGAAAAAAAATTTTG
66 TTGCAAATAAAACAAGTTTTCACAACAATAATTTTTTATCGTTACAAATAT-AATAAAAATTTTC
* * * * * *
7401131 TAACAA-TTTTTTATCACTATAAAAAAATTTTTAAAAATAAATTAAGCAACCACATTAAAAAATC
1 TAACAATTTTTTTGTCATTGTATAAAAATTTTAAAAAATAAATTAAGCAACGACATT-AAAAATC
* * *
7401195 ATTGCAAATAAAATAAGTTTTCACAACAATAATATTTTATTC-TTACAAATATGATAAAAATTTT
65 ATTGCAAATAAAACAAGTTTTCACAACAATAATTTTTTA-TCGTTACAAATATAATAAAAATTTT
7401259 C
129 C
* * * * * *
7401260 GTAACAAATTTTTTGTCATTGTA-AACAATTTTTTTAAAAAATTAATTAAGTAATGATATTGAAA
1 -TAACAATTTTTTTGTCATTGTATAA-AA--ATTTTAAAAAATAAATTAAGCAACGACATT-AAA
* * * * *
7401324 AATCATTACAAATAAAACAAGTTTT-AGTAACATTAATATTTTATCTTTACAAATATAATAAAAA
61 AATCATTGCAAATAAAACAAGTTTTCA-CAACAATAATTTTTTATCGTTACAAATATAATAAAAA
7401388 TTTTC
125 TTTTC
* * * *
7401393 ATAACAACTTTTTTCTCATTGTATAAAATTTTTAAAAAATAAATTAAGCAACAACATTGAAAAAT
1 -TAACAATTTTTTTGTCATTGTATAAAAATTTTAAAAAATAAATTAAGCAACGACATT-AAAAAT
* ***
7401458 CATTGTAAATAAAACAAGTTTTCACGGTAATAATTTTTTATCGTTACAAATATAATAAAAATTTT
64 CATTGCAAATAAAACAAGTTTTCACAACAATAATTTTTTATCGTTACAAATATAATAAAAATTTT
*
7401523 G
129 C
* ** * * * *
7401524 TAACAA-ATTTTTGTTGTTGTAT-AAAATATTAAAAAAGTAAATTAAGCAACAAGATTGAAAATT
1 TAACAATTTTTTTGTCATTGTATAAAAATTTTAAAAAA-TAAATTAAGCAACGACATT-AAAAAT
** * * ** * * * *
7401587 TGTTGTAAATAAAATAAGTTTTCACTTCAACT--TTTTTTGTAGTTACAAATATTAT-AAATTTT
64 CATTGCAAATAAAACAAGTTTTCACAACAA-TAATTTTTTATCGTTACAAATATAATAAAAATTT
*
7401649 GTAG
128 -T-C
* * * * * * * *
7401653 TAATTACTTTTTATTGCCATTGTAT-AAAATATTAAAAAAATAACTTAAACAATGACTTTGAAAA
1 TAA-CAATTTTT-TTGTCATTGTATAAAAAT-TTTAAAAAATAAATTAAGCAACGACATT-AAAA
* ** * * * * * * **
7401717 ATCATTGTAAATAAAACAAACTTACATAACAACT--TTATTTGTCATTACAAATATGATCAAATT
62 ATCATTGCAAATAAAACAAGTTTTCACAACAA-TAATTTTTTATCGTTACAAATATAAT-AAAAA
*
7401780 TTTTG
125 TTTTC
* * * * * * * *
7401785 TAATACCTTTTTTTGTCGTTGTGT-AAGATATTAAACAAATAACTTAAGCAACGACTTTGAAAAA
1 TAACA-ATTTTTTTGTCATTGTATAAAAATTTTAAA-AAATAAATTAAGCAACGACATT-AAAAA
** * * * * * * * * * * *
7401849 TGGTTACAAATAAAAGAA-TTTATAATAGC-TTTATGTTGT-T-GTTACAAATATTATCAAAATT
63 TCATTGCAAATAAAACAAGTTT-TCACAACAATAATTTTTTATCGTTACAAATATAATAAAAATT
7401910 TTC
127 TTC
* * * * * * *
7401913 ATAACAACTTTATTTGTCGTTATAT-AAAATATTAAAAATTAACTTAAGCAACAAC-TTCAAAAA
1 -TAACAA-TTTTTTTGTCATTGTATAAAAATTTTAAAAAATAAATTAAGCAACGACATT-AAAAA
** * * * * *
7401976 CTCATTGCAAA-AAAACCAAGTTTAT-GTAACAACT--TTTTGTTGTCTTTAGAAATATGAT-CA
63 -TCATTGCAAATAAAA-CAAGTTT-TCACAACAA-TAATTTT-TTATCGTTACAAATATAATAAA
*
7402036 AATTTTG
123 AATTTTC
* * * * * *
7402043 TAACAACTTTTTCTATCATTATAT-AAAATATTAAAAAATGACTTAAGCAACGACATTAAAAAAT
1 TAACAA-TTTTTTTGTCATTGTATAAAAATTTTAAAAAATAAATTAAGCAACGACATT-AAAAAT
* * * * *
7402107 TATTACTAATAATATAAGTTTTCACAA
64 CATTGCAAATAAAACAAGTTTTCACAA
7402134 TAACTTTTTG
Statistics
Matches: 896, Mismatches: 196, Indels: 84
0.76 0.17 0.07
Matches are distributed among these distances:
127 17 0.02
128 72 0.08
129 259 0.29
130 147 0.16
131 189 0.21
132 89 0.10
133 115 0.13
134 8 0.01
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (129 bp):
TAACAATTTTTTTGTCATTGTATAAAAATTTTAAAAAATAAATTAAGCAACGACATTAAAAATCA
TTGCAAATAAAACAAGTTTTCACAACAATAATTTTTTATCGTTACAAATATAATAAAAATTTTC
Found at i:7401786 original size:261 final size:251
Alignment explanation
Indices: 7401370--7402106 Score: 660
Period size: 261 Copynumber: 2.8 Consensus size: 251
7401360 TATTTTATCT
* *
7401370 TTACAAATATAATAAAAATTTTCATAACAACTTT-TTT-CTCATTGTATAAAATTTTTAAAAAAT
1 TTACAAATATTAT-AAAATTTTCATAACAACTTTATTTGC-CATTGTATAAAA-TATTAAAAAAT
* * *
7401433 AAATTAAGCAACAACATTGAAAAATCATTGTAAATAAAACAAGTTTTCACGGTAATAA-TTTTTT
63 AACTTAAGCAACAAC-TTGAAAAATCATTGTAAATAAAACAA-ATTT-AC-GTAACAACTTTTTT
* * * *
7401497 ATCGTTACAAATATAATAAAAATTTTGTAACAAATTTTTGTTGTTGTATAAAATATTAAAAAAGT
124 GTCATTACAAATATGAT-CAAATTTTGTAACAAATTTTTGTTGTTGTATAAAATATTAAAAAA-T
* * * * ** * * *
7401562 AAATTAAGCAACAAGATTGAAAATTTGTTGTAAATAAAATAAGTTT-TCACTTCAACTTT-TTTT
187 AACTTAAGCAACAACATTGAAAAATGGTTACAAATAAAAGAA-TTTAT-A-AT-AACTTTATGTT
7401625 GTAG
248 GTAG
* ** *
7401629 TTACAAATATTAT-AAATTTTGTAGTAATTACTTTTTATTGCCATTGTATAAAATATTAAAAAAA
1 TTACAAATATTATAAAATTTT-CA-TAACAACTTTAT-TTGCCATTGTATAAAATATT-AAAAAA
* ** * *
7401693 TAACTTAAACAATGACTTTGAAAAATCATTGTAAATAAAACAAACTTACATAACAACTTTATTTG
62 TAACTTAAGCAACAAC-TTGAAAAATCATTGTAAATAAAACAAATTTACGTAACAACTTT-TTTG
*** * * *
7401758 TCATTACAAATATGATCAAATTTTTTGTAATACCTTTTTTTGTCGTTGTGTAAGATATTAAACAA
125 TCATTACAAATATGATCAAA--TTTTGT-A-ACAAATTTTTGTTGTTGTATAAAATATTAAA-AA
* * *
7401823 ATAACTTAAGCAACGACTTTGAAAAATGGTTACAAATAAAAGAATTTATAATAGCTTTATGTTGT
185 ATAACTTAAGCAACAACATTGAAAAATGGTTACAAATAAAAGAATTTATAATAACTTTATGTTGT
*
7401888 TG
250 AG
* * * *
7401890 TTACAAATATTATCAAAATTTTCATAACAACTTTATTTGTCGTTATATAAAATATTAAAAATTAA
1 TTACAAATATTAT-AAAATTTTCATAACAACTTTATTTGCCATTGTATAAAATATTAAAAAATAA
* * * *
7401955 CTTAAGCAACAACTTCAAAAACTCATTGCAAA-AAAACCAAGTTTATGTAACAACTTTTTGTTGT
65 CTTAAGCAACAACTTGAAAAA-TCATTGTAAATAAAA-CAAATTTACGTAACAAC-TTTT-TTGT
* * * * * * *
7402019 CTTTAGAAATATGATCAAATTTTGTAACAACTTTTTCTATCATTATATAAAATATTAAAAAATGA
126 CATTACAAATATGATCAAATTTTGTAACAAATTTTTGT-T-GTTGTATAAAATATTAAAAAATAA
* *
7402084 CTTAAGCAACGACATTAAAAAAT
189 CTTAAGCAACAACATTGAAAAAT
7402107 TATTACTAAT
Statistics
Matches: 387, Mismatches: 68, Indels: 48
0.77 0.14 0.10
Matches are distributed among these distances:
256 8 0.02
257 34 0.09
258 37 0.10
259 69 0.18
260 69 0.18
261 93 0.24
262 7 0.02
263 67 0.17
264 3 0.01
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (251 bp):
TTACAAATATTATAAAATTTTCATAACAACTTTATTTGCCATTGTATAAAATATTAAAAAATAAC
TTAAGCAACAACTTGAAAAATCATTGTAAATAAAACAAATTTACGTAACAACTTTTTTGTCATTA
CAAATATGATCAAATTTTGTAACAAATTTTTGTTGTTGTATAAAATATTAAAAAATAACTTAAGC
AACAACATTGAAAAATGGTTACAAATAAAAGAATTTATAATAACTTTATGTTGTAG
Found at i:7402000 original size:129 final size:125
Alignment explanation
Indices: 7401122--7402093 Score: 545
Period size: 131 Copynumber: 7.5 Consensus size: 125
7401112 AATGTGAAAA
* * * * * * * * * *
7401122 AAAATTTTGTAACAA-TTTTTTATCACTATAAAAAAATTTTTAAAAATAAATTAAGCAACCACAT
1 AAAATTTTATAACAACTTTTTTGTCATTGT-ATAAAATATTAAAAAATAACTTAAGCAACAACTT
* * * * *
7401186 TAAAAAATCATTGCAAATAAAATAAGTTTTCACAACAATAA-TATTTTAT-TC-TTACAAATATG
65 TGAAAAATCATTGTAAATAAAACAAG-TTT----ATAATAACT-TTTT-TGTCGTTACAAATATA
*
7401248 ATA
123 ATC
* * * * *
7401251 AAAATTTTCGTAACAAATTTTTTGTCATTGTA-AACAATTTTTTTAAAAAATTAA-TTAAGTAAT
1 AAAATTTT-ATAACAACTTTTTTGTCATTGTATAA-AA---TATTAAAAAA-TAACTTAAGCAAC
* ** * * *
7401314 GA-TATTGAAAAATCATTACAAATAAAACAAGTTTTAGTAACATTAA-TATTTTATCTTTACAAA
60 AACT-TTGAAAAATCATTGTAAATAAAACAAG-TTTA-T-A-A-TAACTTTTTTGTCGTTACAAA
*
7401377 TATAATA
119 TATAATC
* * * *
7401384 AAAATTTTCATAACAACTTTTTTCTCATTGTATAAAATTTTTAAAAAATAAATTAAGCAACAACA
1 AAAATTTT-ATAACAACTTTTTTGTCATTGTATAAAA-TATTAAAAAATAACTTAAGCAACAACT
*
7401449 TTGAAAAATCATTGTAAATAAAACAAGTTTTCACGGTAATAA-TTTTTTATCGTTACAAATATAA
64 TTGAAAAATCATTGTAAATAAAACAAG-TTT-A---TAATAACTTTTTTGTCGTTACAAATATAA
*
7401513 TA
124 TC
* * ** * **
7401515 AAAATTTTGTAACAA-ATTTTTGTTGTTGTATAAAATATTAAAAAAGTAAATTAAGCAACAAGAT
1 AAAATTTTATAACAACTTTTTTGTCATTGTATAAAATATTAAAAAA-TAACTTAAGCAACAACTT
* ** * * * *
7401579 TGAAAATTTGTTGTAAATAAAATAAGTTT-TCACTTCAACTTTTTTTGTAGTTACAAATATTAT-
65 TGAAAAATCATTGTAAATAAAACAAGTTTAT-A-AT-AAC-TTTTTTGTCGTTACAAATATAATC
* ** * * **
7401642 AAATTTTGTAGTAATTACTTTTTATTGCCATTGTATAAAATATTAAAAAAATAACTTAAACAATG
1 AAAATTT-TA-TAACAAC-TTTT-TTGTCATTGTATAAAATATT-AAAAAATAACTTAAGCAACA
* * * * *
7401707 ACTTTGAAAAATCATTGTAAATAAAACAAACTTACATAACAACTTTATTTGTCATTACAAATATG
61 ACTTTGAAAAATCATTGTAAATAAAAC-AAGTT-TATAATAACTTT-TTTGTCGTTACAAATATA
7401772 ATC
123 ATC
* * * * * * * *
7401775 AAATTTTTTGTAATACCTTTTTTTGTCGTTGTGTAAGATATTAAACAAATAACTTAAGCAACGAC
1 AAA-ATTTTATAACAAC-TTTTTTGTCATTGTATAAAATATTAAA-AAATAACTTAAGCAACAAC
** ** * * * *
7401840 TTTGAAAAATGGTTACAAATAAAAGAA-TTTATAATAGCTTTATGTTGTTGTTACAAATATTATC
63 TTTGAAAAATCATTGTAAATAAAACAAGTTTATAATAACTTT-T-TTGTCGTTACAAATATAATC
* * *
7401904 AAAATTTTCATAACAACTTTATTTGTCGTTATATAAAATATTAAAAATTAACTTAAGCAACAAC-
1 AAAATTTT-ATAACAACTTT-TTTGTCATTGTATAAAATATTAAAAAATAACTTAAGCAACAACT
* * * * * *
7401968 TTCAAAAACTCATTGCAAA-AAAACCAAGTTTATGTAACAACTTTTTGTTGTCTTTAGAAATATG
64 TTGAAAAA-TCATTGTAAATAAAA-CAAGTTTA--TAATAAC-TTTT-TTGTCGTTACAAATATA
7402032 ATC
123 ATC
* * * *
7402035 -AAATTTTGTAACAACTTTTTCTATCATTATATAAAATATTAAAAAATGACTTAAGCAAC
1 AAAATTTTATAACAACTTTTT-TGTCATTGTATAAAATATTAAAAAATAACTTAAGCAAC
7402094 GACATTAAAA
Statistics
Matches: 684, Mismatches: 110, Indels: 98
0.77 0.12 0.11
Matches are distributed among these distances:
123 1 0.00
124 1 0.00
125 1 0.00
126 2 0.00
127 17 0.02
128 79 0.12
129 166 0.24
130 31 0.05
131 176 0.26
132 89 0.13
133 108 0.16
134 12 0.02
135 1 0.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.38
Consensus pattern (125 bp):
AAAATTTTATAACAACTTTTTTGTCATTGTATAAAATATTAAAAAATAACTTAAGCAACAACTTT
GAAAAATCATTGTAAATAAAACAAGTTTATAATAACTTTTTTGTCGTTACAAATATAATC
Found at i:7403907 original size:10 final size:9
Alignment explanation
Indices: 7403893--7403934 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
7403883 CATCTTAAGG
7403893 TAAAATATT
1 TAAAATATT
*
7403902 GTAAAAAATT
1 -TAAAATATT
7403912 TATAAATATT
1 TA-AAATATT
7403922 T-AAATATT
1 TAAAATATT
7403930 TAAAA
1 TAAAA
7403935 AGAAAAAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 8 0.29
9 5 0.18
10 15 0.54
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (9 bp):
TAAAATATT
Found at i:7415106 original size:14 final size:14
Alignment explanation
Indices: 7415087--7415115 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7415077 TCTTAAATTT
7415087 TTTTACTTTTTTTC
1 TTTTACTTTTTTTC
7415101 TTTTACTTTTTTTC
1 TTTTACTTTTTTTC
7415115 T
1 T
7415116 CTTGATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTACTTTTTTTC
Found at i:7415222 original size:3 final size:3
Alignment explanation
Indices: 7415214--7415261 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
7415204 AGGTTTTCTT
7415214 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7415262 TATTTGCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7421145 original size:21 final size:23
Alignment explanation
Indices: 7421093--7421142 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
7421083 TATGCATTTG
*
7421093 TTATATGATGTTTAACTATATGA
1 TTATATGATGTCTAACTATATGA
7421116 TTATATGATGTCTAACTATATGA
1 TTATATGATGTCTAACTATATGA
7421139 TTAT
1 TTAT
7421143 GATATCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (23 bp):
TTATATGATGTCTAACTATATGA
Found at i:7423720 original size:102 final size:100
Alignment explanation
Indices: 7423497--7423768 Score: 311
Period size: 98 Copynumber: 2.7 Consensus size: 100
7423487 ACGAAAAAAG
* * *
7423497 GAACATTGAGAAAATGACAAGAACAAAATTTGAATATTATTATTTAAATTGTTTC--ATAACATA
1 GAACATTGACAAAATGACAAGAACAAAATTCGAATACTATTATTTAAATTGTTTCATATAACATA
* *
7423560 AAAACATAGGACAAAATAAAAATGACATAAATTAA
66 AAAACATAAGACAAAATAAAAATGACATAAAATAA
* * ** * * *
7423595 GGACATTTACAAAATGATTAGAACAATATTCAAATACTATTATTTACATTGTTTCATATAACATA
1 GAACATTGACAAAATGACAAGAACAAAATTCGAATACTATTATTTAAATTGTTTCATATAACATA
* * *
7423660 ATAATATAAGAGAAAATAGAAAA-GACAAATAAAATAA
66 AAAACATAAGACAAAATA-AAAATGAC--ATAAAATAA
* *
7423697 GAACATTGACAAAATGACAAGAACAACATTCGAATACTATTTATTTATATTGTTTC--ATAACAT
1 GAACATTGACAAAATGACAAGAACAAAATTCGAATACTA-TTATTTAAATTGTTTCATATAACAT
*
7423760 AAGAACATA
65 AAAAACATA
7423769 GTAAATAATG
Statistics
Matches: 144, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
98 45 0.31
100 25 0.17
101 18 0.12
102 41 0.28
103 15 0.10
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.29
Consensus pattern (100 bp):
GAACATTGACAAAATGACAAGAACAAAATTCGAATACTATTATTTAAATTGTTTCATATAACATA
AAAACATAAGACAAAATAAAAATGACATAAAATAA
Found at i:7425561 original size:20 final size:17
Alignment explanation
Indices: 7425541--7425573 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7425531 GTTTATATAT
7425541 TATT-AAAATATAATTTA
1 TATTAAAAAT-TAATTTA
7425558 TATTAAAAATTAATTT
1 TATTAAAAATTAATTT
7425574 TTTTATGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TATTAAAAATTAATTTA
Found at i:7426936 original size:16 final size:16
Alignment explanation
Indices: 7426915--7426945 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7426905 TATTAAATAT
7426915 TTAAAAAAGAAAAAAG
1 TTAAAAAAGAAAAAAG
7426931 TTAAAAAAGAAAAAA
1 TTAAAAAAGAAAAAA
7426946 AGCGCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (16 bp):
TTAAAAAAGAAAAAAG
Found at i:7429039 original size:55 final size:51
Alignment explanation
Indices: 7428952--7429084 Score: 128
Period size: 51 Copynumber: 2.5 Consensus size: 51
7428942 ATTTTGTCCC
* *
7428952 CATATCATAATTACAAGAATATC-TATTATCTTATAATTATTTATTA-TAATACCCT
1 CATATCATAATTATAAAAATATCAT-TTATCTTA-AATTA---ATTACT-ATACCCT
* *
7429007 TATATCATAATTATAAAAATATCATTTCTCTTAAATTAATTACTATACCCT
1 CATATCATAATTATAAAAATATCATTTATCTTAAATTAATTACTATACCCT
* *
7429058 CATA-CTATAATTATGAAAATATTATTT
1 CATATC-ATAATTATAAAAATATCATTT
7429085 TTTTATTATT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
50 1 0.01
51 33 0.49
52 1 0.01
54 5 0.07
55 27 0.40
56 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.44
Consensus pattern (51 bp):
CATATCATAATTATAAAAATATCATTTATCTTAAATTAATTACTATACCCT
Found at i:7429847 original size:129 final size:127
Alignment explanation
Indices: 7429627--7429930 Score: 382
Period size: 129 Copynumber: 2.4 Consensus size: 127
7429617 ATTTTGTTCC
* *
7429627 AAAATTACTATAATTCCTCTATTAAATT--ATATTAAATTTTAACATAATATAAAACTAACTACA
1 AAAATTACTATAATACC-CTATTAAATTACATATTAAATTTTAACATAATATAAAACTAACGACA
* * * * *
7429690 TATTAAATTATTAAAATATCCTTGCCATTGGTTTATAAAAATTTGACATATGACATTTTATTTT
65 TATTAAATTACTAAAATATCCTTACCATTGCTTCATAAAAATTTGACATATGAAATTTTA-TTT
* * * **
7429754 AAAATTACTACAATACACCTATTAAATTACATATAAAATTTTAACGTAATATAAAGTTAACGACA
1 AAAATTACTATAATAC-CCTATTAAATTACATATTAAATTTTAACATAATATAAAACTAACGACA
*
7429819 TATTAAATTACTAAAATA-CTCTTACCATTGCTTCATAAAAATTTGACATGTGAAATTTTATTT
65 TATTAAATTACTAAAATATC-CTTACCATTGCTTCATAAAAATTTGACATATGAAATTTTATTT
* * *
7429882 GAAATATACTATAATACCCCTATTAAATTACTTATTAAATATTAA-ATAA
1 AAAAT-TACTATAATA-CCCTATTAAATTACATATTAAATTTTAACATAA
7429931 CATATATCAA
Statistics
Matches: 152, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
127 24 0.16
128 12 0.08
129 115 0.76
130 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.39
Consensus pattern (127 bp):
AAAATTACTATAATACCCTATTAAATTACATATTAAATTTTAACATAATATAAAACTAACGACAT
ATTAAATTACTAAAATATCCTTACCATTGCTTCATAAAAATTTGACATATGAAATTTTATTT
Found at i:7446629 original size:16 final size:14
Alignment explanation
Indices: 7446602--7446643 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
7446592 TATTATTGTC
*
7446602 ATTTATATTAATAA
1 ATTTAAATTAATAA
7446616 ATTATAACATTAAT-A
1 ATT-TAA-ATTAATAA
7446631 ATTTAAATTAATA
1 ATTTAAATTAATA
7446644 TATCAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
13 6 0.25
14 6 0.25
15 6 0.25
16 6 0.25
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTAAATTAATAA
Found at i:7446959 original size:18 final size:19
Alignment explanation
Indices: 7446933--7446976 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
7446923 AAAAAAATTT
* *
7446933 ATCTAAATAATTATGTTAA
1 ATCTAAATAATAAAGTTAA
7446952 AT-TAAATAATAAAGTTAA
1 ATCTAAATAATAAAGTTAA
7446970 ATCTAAA
1 ATCTAAA
7446977 GCTAAGACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (19 bp):
ATCTAAATAATAAAGTTAA
Found at i:7447589 original size:31 final size:31
Alignment explanation
Indices: 7447551--7447636 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 31
7447541 AAAGAGACTG
*
7447551 AATTTCAAATTTTGTGAGAGTATAAGCACTA
1 AATTTCAAATTTTGTGAGAATATAAGCACTA
** * * *
7447582 AATTTCAAATTTTGTGCTAATATAGGGATTA
1 AATTTCAAATTTTGTGAGAATATAAGCACTA
7447613 AATTTCAAATTTTCTGTGAGAATA
1 AATTTCAAA-TTT-TGTGAGAATA
7447637 AGAATCATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
31 34 0.76
32 3 0.07
33 8 0.18
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (31 bp):
AATTTCAAATTTTGTGAGAATATAAGCACTA
Found at i:7448097 original size:3 final size:3
Alignment explanation
Indices: 7448089--7448114 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7448079 AATATATCAC
7448089 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7448115 CAAGAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7452216 original size:17 final size:17
Alignment explanation
Indices: 7452194--7452238 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7452184 TCACAAAAAG
7452194 AACCCTAACCCTAGCCT-
1 AACCCTAACCCTAG-CTA
*
7452211 AACCCTATCCCTAGCTAA
1 AACCCTAACCCTAGCT-A
7452229 AACCCTAACC
1 AACCCTAACC
7452239 TAGACACTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.08
17 13 0.54
18 9 0.38
ACGTcount: A:0.33, C:0.44, G:0.04, T:0.18
Consensus pattern (17 bp):
AACCCTAACCCTAGCTA
Found at i:7452335 original size:17 final size:17
Alignment explanation
Indices: 7452310--7452360 Score: 77
Period size: 17 Copynumber: 3.0 Consensus size: 17
7452300 AAGCCTAAAC
*
7452310 CCTAAACTAAACCCTAA
1 CCTAGACTAAACCCTAA
7452327 CCTAGACTAAACCCTAA
1 CCTAGACTAAACCCTAA
7452344 CCTAG-CTCAAACCCTAA
1 CCTAGACT-AAACCCTAA
7452361 GCTTTAACTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 2 0.06
17 30 0.94
ACGTcount: A:0.41, C:0.37, G:0.04, T:0.18
Consensus pattern (17 bp):
CCTAGACTAAACCCTAA
Found at i:7452453 original size:31 final size:30
Alignment explanation
Indices: 7452395--7452481 Score: 104
Period size: 31 Copynumber: 2.9 Consensus size: 30
7452385 CCTAAAACCC
* *
7452395 AACCCT-AACCTAGTCTTAAACCTTAACTTA
1 AACCCTAAACCTA-ACTTAAACCCTAACTTA
*
7452425 AACCCTAAATCTAACTCTAAACCCTAACTTA
1 AACCCTAAACCTAACT-TAAACCCTAACTTA
* *
7452456 AACCCTATACCTAACTTTAACCCTAA
1 AACCCTAAACCTAACTTAAACCCTAA
7452482 AACTAATCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 17 0.35
31 32 0.65
ACGTcount: A:0.39, C:0.32, G:0.01, T:0.28
Consensus pattern (30 bp):
AACCCTAAACCTAACTTAAACCCTAACTTA
Found at i:7452471 original size:49 final size:50
Alignment explanation
Indices: 7452411--7452517 Score: 137
Period size: 49 Copynumber: 2.1 Consensus size: 50
7452401 AACCTAGTCT
* *
7452411 TAAACCTTAACTTAAACCCTAAATCTAA-CTCTAAACCCTAA-CTTAAACCC
1 TAAACC-TAACTTAAACCCTAAAACTAATC-CTAAACCCTAACCTCAAACCC
* * *
7452461 TATACCTAACTTTAACCCTAAAACTAATCCTAATCCCTAACCTCAAACCC
1 TAAACCTAACTTAAACCCTAAAACTAATCCTAAACCCTAACCTCAAACCC
7452511 TAAACCT
1 TAAACCT
7452518 TAAACCTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 29 0.59
50 20 0.41
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (50 bp):
TAAACCTAACTTAAACCCTAAAACTAATCCTAAACCCTAACCTCAAACCC
Found at i:7452487 original size:18 final size:18
Alignment explanation
Indices: 7452448--7452487 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7452438 ACTCTAAACC
* *
7452448 CTAACTTAAACCCTATAC
1 CTAACTTAAACCCTAAAA
*
7452466 CTAACTTTAACCCTAAAA
1 CTAACTTAAACCCTAAAA
7452484 CTAA
1 CTAA
7452488 TCCTAATCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (18 bp):
CTAACTTAAACCCTAAAA
Found at i:7461597 original size:3 final size:3
Alignment explanation
Indices: 7461591--7461637 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
7461581 TCCTTCTTCA
7461591 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7461638 CTAACAAGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7461858 original size:9 final size:10
Alignment explanation
Indices: 7461843--7461875 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
7461833 TTCTTACCAA
7461843 AAATAATAAT
1 AAATAATAAT
7461853 -AATAATAAT
1 AAATAATAAT
7461862 AAATAATAAAT
1 AAATAAT-AAT
7461873 AAA
1 AAA
7461876 CAAAACTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.43
10 6 0.29
11 6 0.29
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAATAATAAT
Found at i:7461868 original size:7 final size:7
Alignment explanation
Indices: 7461843--7461874 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
7461833 TTCTTACCAA
7461843 AAATAAT
1 AAATAAT
7461850 -AATAAT
1 AAATAAT
7461856 -AATAAT
1 AAATAAT
7461862 AAATAAT
1 AAATAAT
7461869 AAATAA
1 AAATAA
7461875 ACAAAACTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAATAAT
Found at i:7462090 original size:22 final size:21
Alignment explanation
Indices: 7462063--7462112 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
7462053 ATTCTATCTG
*
7462063 TAAATTTAATTAAATAAATTTA
1 TAAATTTAATTAAA-AAATTGA
* *
7462085 TAAATTTATTTTAAAAATTGA
1 TAAATTTAATTAAAAAATTGA
7462106 TAAATTT
1 TAAATTT
7462113 TGTTTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TAAATTTAATTAAAAAATTGA
Found at i:7462123 original size:21 final size:21
Alignment explanation
Indices: 7462076--7462124 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
7462066 ATTTAATTAA
*
7462076 ATAAATTTATAAATTTATTTT
1 ATAAATTGATAAATTTATTTT
*
7462097 AAAAATTGATAAATTT-TGTTT
1 ATAAATTGATAAATTTAT-TTT
7462118 ATAAATT
1 ATAAATT
7462125 CCGTAAGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATAAATTGATAAATTTATTTT
Found at i:7463825 original size:15 final size:16
Alignment explanation
Indices: 7463793--7463825 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7463783 AAAAGTAAAA
*
7463793 TTTTTTAGTTTTACAT
1 TTTTTTAATTTTACAT
7463809 TTTTTTAATTTTA-AT
1 TTTTTTAATTTTACAT
7463824 TT
1 TT
7463826 CAACAGATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (16 bp):
TTTTTTAATTTTACAT
Found at i:7464744 original size:21 final size:20
Alignment explanation
Indices: 7464691--7464746 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
7464681 AATGTATTGT
*
7464691 TTTATATAAAATGAAGAATA
1 TTTACATAAAATGAAGAATA
7464711 TTTACGA-AAAATGAAGAAAATA
1 TTTAC-ATAAAATGAAG--AATA
7464733 TTTA-ATAAAATGAA
1 TTTACATAAAATGAA
7464747 TAAACAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 14 0.45
21 9 0.29
22 8 0.26
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (20 bp):
TTTACATAAAATGAAGAATA
Found at i:7469579 original size:2 final size:2
Alignment explanation
Indices: 7469572--7469596 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7469562 TAGAACATAG
7469572 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7469597 GTTGTGGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7477234 original size:26 final size:26
Alignment explanation
Indices: 7477199--7477257 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
7477189 TAGGAAGCCA
7477199 AAGT-TAAGAA-AATGATTATCCTATT
1 AAGTATAAGAATAA-GATTATCCTATT
7477224 AAGTATAAGAATAAGATTATCCTATT
1 AAGTATAAGAATAAGATTATCCTATT
7477250 AAGTATAA
1 AAGTATAA
7477258 TAAGCAATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 4 0.12
26 26 0.81
27 2 0.06
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (26 bp):
AAGTATAAGAATAAGATTATCCTATT
Found at i:7477442 original size:1 final size:1
Alignment explanation
Indices: 7477436--7477463 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
7477426 CACTTTCTAC
7477436 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
7477464 GAAATAGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7482016 original size:16 final size:17
Alignment explanation
Indices: 7481964--7482017 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
7481954 TAGGATGGAT
* *
7481964 AGAAAAAGGGAAATAT-
1 AGAAAAATGGAAACATG
*
7481980 AG-AAAATTGAAACATG
1 AGAAAAATGGAAACATG
*
7481996 AGAAAAATGGAAAGATG
1 AGAAAAATGGAAACATG
7482013 -GAAAA
1 AGAAAA
7482018 CATTTATATG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 10 0.32
16 9 0.29
17 12 0.39
ACGTcount: A:0.61, C:0.02, G:0.24, T:0.13
Consensus pattern (17 bp):
AGAAAAATGGAAACATG
Found at i:7483697 original size:5 final size:5
Alignment explanation
Indices: 7483687--7483711 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7483677 TAAAAAGAAC
7483687 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
7483712 GATACTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:7486423 original size:17 final size:16
Alignment explanation
Indices: 7486397--7486432 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
7486387 CAAAAAAAAA
7486397 AAAAAAAAAAACCAAAC
1 AAAAAAAAAAACC-AAC
*
7486414 AAAAATAAAAACCAAC
1 AAAAAAAAAAACCAAC
7486430 AAA
1 AAA
7486433 CAAAGAGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.03
Consensus pattern (16 bp):
AAAAAAAAAAACCAAC
Found at i:7493921 original size:13 final size:12
Alignment explanation
Indices: 7493903--7494225 Score: 105
Period size: 13 Copynumber: 26.8 Consensus size: 12
7493893 ACTTTTGAGC
*
7493903 ATAAATTATACTT
1 ATAAATAATA-TT
7493916 ATAAATAATATT
1 ATAAATAATATT
* *
7493928 ATATA-AATA-A
1 ATAAATAATATT
*
7493938 ATAATATACTATT
1 ATAA-ATAATATT
7493951 AATATAAT-ATATT
1 -ATA-AATAATATT
7493964 AATAAATAATATT
1 -ATAAATAATATT
*
7493977 AATAAGTAATATT
1 -ATAAATAATATT
7493990 AT-AAT-ATATT
1 ATAAATAATATT
7494000 CATAAATAATATT
1 -ATAAATAATATT
* *
7494013 AT-ATTAATA-A
1 ATAAATAATATT
*
7494023 AT-CAT-ATATT
1 ATAAATAATATT
*
7494033 AATAAGTAATA-T
1 -ATAAATAATATT
*
7494045 ATTAAT-ATATT
1 ATAAATAATATT
*
7494056 AATAAATCATATT
1 -ATAAATAATATT
*
7494069 ATATTAATAA-ATC
1 ATA--AATAATATT
7494082 AT--AT-AT-TT
1 ATAAATAATATT
7494090 ATAAATAATATACT
1 ATAAATAATAT--T
*
7494104 ATTAATAA-A-T
1 ATAAATAATATT
** *
7494114 A-ATTTACTATT
1 ATAAATAATATT
7494125 AATATAAT-ATATT
1 -ATA-AATAATATT
7494138 AATAAATAATATACT
1 -ATAAATAATAT--T
7494153 ATTAATATATATATT
1 A-TAA-ATA-ATATT
* *
7494168 AAAAATATTATT
1 ATAAATAATATT
7494180 AATAAATAATATT
1 -ATAAATAATATT
7494193 AT-AAT-ATATT
1 ATAAATAATATT
*
7494203 AATAAATAATATC
1 -ATAAATAATATT
*
7494216 AAAAATAATA
1 ATAAATAATA
7494226 AATAGTTTTA
Statistics
Matches: 234, Mismatches: 36, Indels: 81
0.67 0.10 0.23
Matches are distributed among these distances:
8 4 0.02
9 7 0.03
10 24 0.10
11 30 0.13
12 52 0.22
13 82 0.35
14 21 0.09
15 7 0.03
16 3 0.01
17 4 0.02
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (12 bp):
ATAAATAATATT
Found at i:7494034 original size:56 final size:57
Alignment explanation
Indices: 7493958--7494191 Score: 241
Period size: 56 Copynumber: 4.3 Consensus size: 57
7493948 ATTAATATAA
*
7493958 TATATTAATAAAT-A-ATATTAATAAGTAATATTA-TAATATATTCATAAATAATAT
1 TATATTAATAAATAATATATTAATAAGTAATATTATTAATATATTAATAAATAATAT
* *
7494012 TATATTAATAAATCATATATTAATAAGTAATA-TATTAATATATTAATAAATCATAT
1 TATATTAATAAATAATATATTAATAAGTAATATTATTAATATATTAATAAATAATAT
* *
7494068 TATATTAATAAATCATATATT--T-A-TAA-A-TAAT-ATACTATTAATAAATAAT-T
1 TATATTAATAAATAATATATTAATAAGTAATATTATTAATA-TATTAATAAATAATAT
* *
7494118 TACTATTAAT--ATAATATATTAATAAATAATATACTATTAATATATATATTAAA-AATA-
1 TA-TATTAATAAATAATATATTAATAAGTAATAT--TATTAATATAT-TAATAAATAATAT
7494175 T-TATTAATAAATAATAT
1 TATATTAATAAATAATAT
7494192 TATAATATAT
Statistics
Matches: 155, Mismatches: 7, Indels: 33
0.79 0.04 0.17
Matches are distributed among these distances:
49 9 0.06
50 6 0.04
51 25 0.16
52 4 0.03
53 4 0.03
54 15 0.10
55 10 0.06
56 56 0.36
57 17 0.11
58 9 0.06
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (57 bp):
TATATTAATAAATAATATATTAATAAGTAATATTATTAATATATTAATAAATAATAT
Found at i:7494197 original size:15 final size:16
Alignment explanation
Indices: 7493916--7494198 Score: 169
Period size: 18 Copynumber: 17.2 Consensus size: 16
7493906 AATTATACTT
7493916 ATAAATAATATTATATAA
1 ATAAATAATATTAT-T-A
7493934 ATAAATAATATACTATTA
1 ATAAATAATAT--TATTA
7493952 AT--ATAATA-TATTA
1 ATAAATAATATTATTA
*
7493965 ATAAATAATATTAATA
1 ATAAATAATATTATTA
* *
7493981 AGTAATATTATAATATATTC
1 A-TAA-ATAAT-AT-TATTA
7494001 ATAAATAATATTATATTA
1 ATAAATAATA-T-TATTA
*
7494019 ATAAATCATATATTAATA
1 ATAAAT-A-ATATTATTA
*
7494037 AGTAATATATTAATATATTA
1 A-TAA-ATAAT-AT-TATTA
*
7494057 ATAAATCATATTATATTA
1 ATAAATAATA-T-TATTA
* *
7494075 ATAAATCATA-TATTT
1 ATAAATAATATTATTA
7494090 ATAAATAATATACTATTA
1 ATAAATAATAT--TATTA
*
7494108 ATAAATAAT-TTACTA
1 ATAAATAATATTATTA
*
7494123 TTAATATAATA-TATTA
1 ATAA-ATAATATTATTA
*
7494139 ATAAATAATA-TACT-
1 ATAAATAATATTATTA
*
7494153 ATTAAT-ATA-TA-TA
1 ATAAATAATATTATTA
*
7494166 TTAAA-AATATTATTA
1 ATAAATAATATTATTA
7494181 ATAAATAATATTA-TA
1 ATAAATAATATTATTA
7494196 ATA
1 ATA
7494199 TATTAATAAA
Statistics
Matches: 215, Mismatches: 23, Indels: 57
0.73 0.08 0.19
Matches are distributed among these distances:
12 1 0.00
13 18 0.08
14 7 0.03
15 46 0.21
16 30 0.14
17 6 0.03
18 73 0.34
19 17 0.08
20 17 0.08
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (16 bp):
ATAAATAATATTATTA
Found at i:7494214 original size:15 final size:15
Alignment explanation
Indices: 7493916--7494191 Score: 181
Period size: 15 Copynumber: 17.7 Consensus size: 15
7493906 AATTATACTT
7493916 ATAAATAATATTATATAA
1 ATAAATAATA-TAT-T-A
*
7493934 ATAAATAATATACTA
1 ATAAATAATATATTA
*
7493949 TTAATATAATATATTA
1 ATAA-ATAATATATTA
7493965 ATAAATAATATTAATAAGTA
1 ATAAATAATA-T-AT---TA
* *
7493985 ATATTATAATATATTC
1 ATA-AATAATATATTA
7494001 ATAAATAATATTATATTA
1 ATAAAT-A-A-TATATTA
*
7494019 ATAAATCATATATTA
1 ATAAATAATATATTA
*
7494034 ATAAGTAATATATTA
1 ATAAATAATATATTA
* *
7494049 AT--ATATTA-ATAA
1 ATAAATAATATATTA
* *
7494061 AT-CATATTATATTA
1 ATAAATAATATATTA
* *
7494075 ATAAATCATATATTT
1 ATAAATAATATATTA
7494090 ATAAATAATATACTATTA
1 ATAAAT-A-ATA-TATTA
* *
7494108 ATAAATAATTTACTA
1 ATAAATAATATATTA
*
7494123 TTAATATAATATATTA
1 ATAA-ATAATATATTA
*
7494139 ATAAATAATATACT-
1 ATAAATAATATATTA
*
7494153 ATTAATATATATATTA
1 ATAAATA-ATATATTA
7494169 A-AAAT-AT-TATTA
1 ATAAATAATATATTA
7494181 ATAAATAATAT
1 ATAAATAATAT
7494192 TATAATATAT
Statistics
Matches: 205, Mismatches: 31, Indels: 47
0.72 0.11 0.17
Matches are distributed among these distances:
12 11 0.05
13 16 0.08
14 13 0.06
15 74 0.36
16 36 0.18
17 9 0.04
18 32 0.16
19 2 0.01
20 6 0.03
21 6 0.03
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (15 bp):
ATAAATAATATATTA
Found at i:7494229 original size:23 final size:23
Alignment explanation
Indices: 7494167--7494229 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
7494157 ATATATATAT
*
7494167 TAAAAATATTATTAATAAATAATA
1 TAAAAATA-TATAAATAAATAATA
* * *
7494191 TTATAATATATTAATAAATAATA
1 TAAAAATATATAAATAAATAATA
7494214 TCAAAAATA-ATAAATA
1 T-AAAAATATATAAATA
7494230 GTTTTATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
23 22 0.67
24 11 0.33
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATATATAAATAAATAATA
Found at i:7494285 original size:147 final size:147
Alignment explanation
Indices: 7494006--7494295 Score: 312
Period size: 147 Copynumber: 2.0 Consensus size: 147
7493996 TATTCATAAA
* * * *
7494006 TAATATTATATTAATAAATCATATATTAATAAGTAATATATTAATATATTAATAAATCATATTAT
1 TAATATTATATTAATAAATCATATATTAATAAATAATATATTAATATATTAATAAATAATATAAA
* * *
7494071 ATTAATAAATCATATATTTATAAATAATATACTATTAATAAATAATTTACTATTAATATAATATA
66 AATAATAAATCATATATTTATAAATAATATACTATTAACAAATAATTTAATATTAATATAATATA
7494136 TTAATAAATAATATACTAT
131 TT-ATAAA-AATATACTAT
7494155 TAATATATATATTAA-AAAT-AT-TATTAATAAATAATAT-TATAATATATTAATAAATAATATC
1 TAATAT-TATATTAATAAATCATATATTAATAAATAATATAT-TAATATATTAATAAATAATAT-
* ** * *
7494216 AAAAATAATAAAT-AGTTTTATTT-TAAGTATTTTTTA-TATTAACATAATATTTTAATATTAA-
63 AAAAATAATAAATCA--TATATTTATAA--ATAATATACTATTAACA-AATAATTTAATATTAAT
7494277 AT-AT-TATTATAAAAATATA
123 ATAATATATTATAAAAATATA
7494296 ATTATTTTTT
Statistics
Matches: 121, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
145 6 0.05
146 6 0.05
147 40 0.33
148 17 0.14
149 25 0.21
150 27 0.22
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (147 bp):
TAATATTATATTAATAAATCATATATTAATAAATAATATATTAATATATTAATAAATAATATAAA
AATAATAAATCATATATTTATAAATAATATACTATTAACAAATAATTTAATATTAATATAATATA
TTATAAAAATATACTAT
Found at i:7494311 original size:37 final size:33
Alignment explanation
Indices: 7494259--7494344 Score: 100
Period size: 33 Copynumber: 2.5 Consensus size: 33
7494249 TTATATTAAC
7494259 ATAATATTTTAATATTAAATATTATTATAAAAATATA
1 ATAAT-TTTTAATATT-AATA-TATTATAAAAATA-A
* * *
7494296 ATTATTTTTTAATATTAATATATTTTAATAATAA
1 A-TAATTTTTAATATTAATATATTATAAAAATAA
7494330 ATAATTTTTAATATT
1 ATAATTTTTAATATT
7494345 TGAATAGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
33 13 0.30
34 2 0.05
35 11 0.25
36 4 0.09
37 11 0.25
38 3 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (33 bp):
ATAATTTTTAATATTAATATATTATAAAAATAA
Found at i:7494361 original size:37 final size:34
Alignment explanation
Indices: 7494259--7494362 Score: 95
Period size: 37 Copynumber: 2.9 Consensus size: 34
7494249 TTATATTAAC
*
7494259 ATAATATTTTAATATTAAATATTATTATAAAAATATA
1 ATAAT-TTTTAATATT-AATATTATT-TAATAATATA
*
7494296 ATTATTTTTTAATATTAATA-TATTTTAATAATA-A
1 A-TAATTTTTAATATTAATATTA-TTTAATAATATA
7494330 ATAATTTTTAATATTTGAATAGTTATATTAATA
1 ATAATTTTTAATA-TT-AATA-TTAT-TTAATA
7494363 TTATTTGAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
33 11 0.19
34 4 0.07
35 13 0.23
36 7 0.12
37 19 0.33
38 3 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (34 bp):
ATAATTTTTAATATTAATATTATTTAATAATATA
Found at i:7498472 original size:11 final size:11
Alignment explanation
Indices: 7498456--7498500 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
7498446 ATGATATTAT
*
7498456 AAAATAATATG
1 AAAATAATATA
7498467 AAAATAATATA
1 AAAATAATATA
7498478 AATAATAAATATA
1 AA-AAT-AATATA
7498491 AAAATAATAT
1 AAAATAATAT
7498501 GATTTAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 17 0.55
12 6 0.19
13 8 0.26
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
AAAATAATATA
Found at i:7499614 original size:7 final size:7
Alignment explanation
Indices: 7499602--7499631 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
7499592 ATAATGACAA
7499602 ATCTTAC
1 ATCTTAC
7499609 ATCTTAC
1 ATCTTAC
7499616 ATCTTAC
1 ATCTTAC
7499623 ATCTTAC
1 ATCTTAC
7499630 AT
1 AT
7499632 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (7 bp):
ATCTTAC
Found at i:7500931 original size:2 final size:2
Alignment explanation
Indices: 7500924--7500957 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7500914 GTAGCCAACG
7500924 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7500958 TTTTTAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7502236 original size:16 final size:16
Alignment explanation
Indices: 7502215--7502248 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7502205 AGAAAAATAG
7502215 GCATGGGCAGTTGATT
1 GCATGGGCAGTTGATT
**
7502231 GCATGGGTTGTTGATT
1 GCATGGGCAGTTGATT
7502247 GC
1 GC
7502249 CCTTGAGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.38, T:0.35
Consensus pattern (16 bp):
GCATGGGCAGTTGATT
Found at i:7503302 original size:30 final size:30
Alignment explanation
Indices: 7503245--7503335 Score: 91
Period size: 30 Copynumber: 3.1 Consensus size: 30
7503235 TAGGTCACTC
*
7503245 AATA-AAAATAAAT-AACTAATAAAAATCAGTA
1 AATATAAAATAAATCAA-AAATAAAAATCA--A
* *
7503276 AA-ATAAAATAAA-CAAATATCAAAATCAA
1 AATATAAAATAAATCAAAAATAAAAATCAA
*
7503304 AATATAAAATAAATCAAAAATAAAAATAAA
1 AATATAAAATAAATCAAAAATAAAAATCAA
7503334 AA
1 AA
7503336 AAGGAAAACC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
28 3 0.06
29 10 0.20
30 25 0.50
31 12 0.24
ACGTcount: A:0.73, C:0.07, G:0.01, T:0.20
Consensus pattern (30 bp):
AATATAAAATAAATCAAAAATAAAAATCAA
Found at i:7503319 original size:17 final size:17
Alignment explanation
Indices: 7503297--7503333 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7503287 ACAAATATCA
7503297 AAATC-AAAATATAAAAT
1 AAATCAAAAATA-AAAAT
7503314 AAATCAAAAATAAAAAT
1 AAATCAAAAATAAAAAT
7503331 AAA
1 AAA
7503334 AAAAGGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (17 bp):
AAATCAAAAATAAAAAT
Found at i:7504132 original size:3 final size:3
Alignment explanation
Indices: 7504126--7504188 Score: 69
Period size: 3 Copynumber: 21.0 Consensus size: 3
7504116 GAATAAAAAC
*
7504126 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GACT- ACA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA AT-A ATA ATA
7504173 AT- ATA ATA A-A ATA ATA
1 ATA ATA ATA ATA ATA ATA
7504189 TACTACAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
2 4 0.08
3 43 0.83
4 4 0.08
5 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7504198 original size:13 final size:13
Alignment explanation
Indices: 7504169--7504221 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
7504159 TACAATAAAT
*
7504169 AATAATATAATAA
1 AATAATATACTAA
7504182 AATAATATACTACA
1 AATAATATACTA-A
* *
7504196 ATATACTATACTAT
1 A-ATAATATACTAA
*
7504210 AATAATAAACTA
1 AATAATATACTA
7504222 TATTGTACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
13 20 0.61
14 3 0.09
15 10 0.30
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATATACTAA
Found at i:7504205 original size:28 final size:28
Alignment explanation
Indices: 7504174--7504235 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
7504164 TAAATAATAA
*
7504174 TATAATAAAATAATATACTACAATATAC
1 TATAATAAAATAATAAACTACAATATAC
* * * * *
7504202 TATACTATAATAATAAACTATATTGTAC
1 TATAATAAAATAATAAACTACAATATAC
7504230 TATAAT
1 TATAAT
7504236 TTACTAAATT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.37
Consensus pattern (28 bp):
TATAATAAAATAATAAACTACAATATAC
Found at i:7504210 original size:10 final size:10
Alignment explanation
Indices: 7504183--7504253 Score: 58
Period size: 10 Copynumber: 7.3 Consensus size: 10
7504173 ATATAATAAA
7504183 ATAATATACT
1 ATAATATACT
*
7504193 ACAATATACT
1 ATAATATACT
*
7504203 ATACTATA--
1 ATAATATACT
*
7504211 ATAATAAACT
1 ATAATATACT
* *
7504221 ATATTGTACT
1 ATAATATACT
*
7504231 ATAATTTACT
1 ATAATATACT
7504241 A-AATTATACT
1 ATAA-TATACT
7504251 ATA
1 ATA
7504254 CTAGTAACAA
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
8 6 0.13
9 2 0.04
10 37 0.80
11 1 0.02
ACGTcount: A:0.48, C:0.11, G:0.01, T:0.39
Consensus pattern (10 bp):
ATAATATACT
Found at i:7504211 original size:33 final size:34
Alignment explanation
Indices: 7504131--7504217 Score: 115
Period size: 33 Copynumber: 2.6 Consensus size: 34
7504121 AAAACATAAT
7504131 AATAATAATAATAATAATAATAATAGACTACAATA
1 AATAATAAT-ATAATAATAATAATAGACTACAATA
*
7504166 AATAATAATATAATAA-AATAATATACTACAATA
1 AATAATAATATAATAATAATAATAGACTACAATA
* *
7504199 TACT-ATACTATAATAATAA
1 -AATAATAATATAATAATAA
7504218 ACTATATTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
33 27 0.57
34 11 0.23
35 9 0.19
ACGTcount: A:0.61, C:0.07, G:0.01, T:0.31
Consensus pattern (34 bp):
AATAATAATATAATAATAATAATAGACTACAATA
Found at i:7504541 original size:30 final size:31
Alignment explanation
Indices: 7504456--7504542 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 31
7504446 ACCTGAGATC
*
7504456 AAATAAGTGACTAAGATTGAGTCGCGAATCAAAA
1 AAATAAGTGACTGAGATTGAG-CGCGAATC--AA
*
7504490 AAATAAAATGATCTG-GATTGAGC-CGATATC-A
1 AAAT-AAGTGA-CTGAGATTGAGCGCGA-ATCAA
7504521 AAATAAGTGACTGAGATTGAGC
1 AAATAAGTGACTGAGATTGAGC
7504543 TGTAAGTTAG
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
29 3 0.07
30 13 0.28
31 5 0.11
33 3 0.07
34 8 0.17
35 12 0.26
36 2 0.04
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (31 bp):
AAATAAGTGACTGAGATTGAGCGCGAATCAA
Found at i:7504734 original size:55 final size:55
Alignment explanation
Indices: 7504674--7504952 Score: 193
Period size: 55 Copynumber: 4.9 Consensus size: 55
7504664 CGTAGATTAA
*
7504674 AAAAATGATATGGATTGAGCCAAGATCGAATGACCAGGATGAAATTATGAGTCAG
1 AAAAATGATATGGATTGAGCCAAGATCGAATGACCAGGATGAAATTACGAGTCAG
* * * * * *
7504729 AAAAATAATCTAGATTGAGCCAAGATTGATTGACCAGGATGAAATTACGATTCTAAAAG
1 AAAAATGATATGGATTGAGCCAAGATCGAATGACCAGGATGAAATTACGAGTC----AG
* ** * * * * *
7504788 ATAAAGTGACTA-GGATCAAGTCAATGTAAAAAAT-GAATGACTAGGATAAAATTGCGAGTCCG
1 A-AAAATGA-TATGGATTGAGCCAA-G------ATCGAATGACCAGGATGAAATTACGAGTCAG
* * * * * *
7504850 AAAAATGATCTGGACTGAGCCAAGATCAAATGATCAGGATGAAATTGCGAGTCAA
1 AAAAATGATATGGATTGAGCCAAGATCGAATGACCAGGATGAAATTACGAGTCAG
* * * * *
7504905 AAAAATGATTTGGACTGAGCCAAGATCGATTGATCGGGATGAAATTAC
1 AAAAATGATATGGATTGAGCCAAGATCGAATGACCAGGATGAAATTAC
7504953 AGATTTAAAA
Statistics
Matches: 172, Mismatches: 37, Indels: 30
0.72 0.15 0.13
Matches are distributed among these distances:
54 2 0.01
55 111 0.65
59 3 0.02
60 15 0.09
61 16 0.09
62 2 0.01
66 21 0.12
67 2 0.01
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (55 bp):
AAAAATGATATGGATTGAGCCAAGATCGAATGACCAGGATGAAATTACGAGTCAG
Found at i:7504820 original size:176 final size:176
Alignment explanation
Indices: 7504606--7505178 Score: 479
Period size: 176 Copynumber: 3.3 Consensus size: 176
7504596 ACCACAGGTC
* * * * *
7504606 TAAAAAATAAAGCGACCAGGA-CTGAGTTAAGGTAAAAAATGAATGA-TTGAGACAAAA-T-CGT
1 TAAAAGATAAAGCGACTAGGATC-AAGTCAAGGTAAAAAATGAATGACTAG-GACAAAATTGCG-
* * * * *
7504667 AGATTAAAAAAATGATATGGATTGAGCCAAGATCGAATGACCAGGATGAAATTATGAGTCAGAAA
63 AG-TCAAAAAAATGATATGGACTGAGCCAAGATCAAATGACCAGGATGAAATTACGAGTCAAAAA
* *
7504732 AATAATCTAGATTGAGCCAAGATTGATTGACCAGGATGAAATTAC-GATT
127 AATAATCTAGACTGAGCCAAGATCGATTGACCAGGATGAAATTACAGATT
* * *
7504781 CTAAAAGATAAAGTGACTAGGATCAAGTCAATGTAAAAAATGAATGACTAGGATAAAATTGCGAG
1 -TAAAAGATAAAGCGACTAGGATCAAGTCAAGGTAAAAAATGAATGACTAGGACAAAATTGCGAG
** * * *
7504846 TCCGAAAAATGATCTGGACTGAGCCAAGATCAAATGATCAGGATGAAATTGCGAGTCAAAAAAAT
65 TCAAAAAAATGATATGGACTGAGCCAAGATCAAATGACCAGGATGAAATTACGAGTCAAAAAAAT
* * * * *
7504911 GATTTGGACTGAGCCAAGATCGATTGATCGGGATGAAATTACAGATT
130 AATCTAGACTGAGCCAAGATCGATTGACCAGGATGAAATTACAGATT
* * * * * *
7504958 TAAAAGATAAAGCGACTAGGATCGAGTTAAGGTAAAAAATGAAT-AATCGAGA-AGAAATCGCAA
1 TAAAAGATAAAGCGACTAGGATCAAGTCAAGGTAAAAAATGAATGACTAG-GACA-AAATTGCGA
* * * * * ** ** * *
7505021 GTCAAAAAAATAATCTAGACTGAGCTATA-ATTAAATGA-TTGAGACAAAATCACAAGTC-AAAA
64 GTCAAAAAAATGATATGGACTGAGCCA-AGATCAAATGACCAG-GATGAAATTACGAGTCAAAAA
* * * * * *** *
7505083 AATGATATAGATTGAGCCAAGATCGACTGACCAAGATGAAACCGCTA-ATC
127 AATAATCTAGACTGAGCCAAGATCGATTGACCAGGATGAAATTAC-AGATT
*
7505133 TAAAAGATAAAGCGACCA--ATACTAAGTCAAGGTAAAAAATGAATGA
1 TAAAAGATAAAGCGACTAGGAT-C-AAGTCAAGGTAAAAAATGAATGA
7505179 TCATGATGAA
Statistics
Matches: 324, Mismatches: 60, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
173 2 0.01
174 1 0.00
175 82 0.25
176 226 0.70
177 11 0.03
178 2 0.01
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (176 bp):
TAAAAGATAAAGCGACTAGGATCAAGTCAAGGTAAAAAATGAATGACTAGGACAAAATTGCGAGT
CAAAAAAATGATATGGACTGAGCCAAGATCAAATGACCAGGATGAAATTACGAGTCAAAAAAATA
ATCTAGACTGAGCCAAGATCGATTGACCAGGATGAAATTACAGATT
Found at i:7505531 original size:16 final size:16
Alignment explanation
Indices: 7505510--7505543 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7505500 TTTTCTCAAG
*
7505510 CATCTTTAATTTCTTT
1 CATCTTGAATTTCTTT
*
7505526 CATCTTGGATTTCTTT
1 CATCTTGAATTTCTTT
7505542 CA
1 CA
7505544 AAATAATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (16 bp):
CATCTTGAATTTCTTT
Found at i:7505983 original size:14 final size:13
Alignment explanation
Indices: 7505947--7505983 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
7505937 AATTTAAACC
7505947 TTTTTTTTTCATT
1 TTTTTTTTTCATT
7505960 TTTGTTTTTTCATT
1 TTT-TTTTTTCATT
7505974 TTTTTATTTT
1 TTTTT-TTTT
7505984 TTTGCACACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.08, C:0.05, G:0.03, T:0.84
Consensus pattern (13 bp):
TTTTTTTTTCATT
Found at i:7506297 original size:16 final size:15
Alignment explanation
Indices: 7506275--7506321 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
7506265 GCCCCAACAA
7506275 TTTTTCTTTATTTTT
1 TTTTTCTTTATTTTT
*
7506290 TATTTTCTTCATTCTTT
1 T-TTTTCTTTATT-TTT
*
7506307 TTTTTTTTTATTTTT
1 TTTTTCTTTATTTTT
7506322 CAAGAAAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 4 0.15
16 19 0.70
17 4 0.15
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTATTTTT
Found at i:7509946 original size:6 final size:6
Alignment explanation
Indices: 7509935--7509960 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7509925 TTTGAAAAGA
7509935 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
7509961 TTTGCTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:7510093 original size:28 final size:27
Alignment explanation
Indices: 7510034--7510099 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
7510024 TAAAAATTAG
*
7510034 TAAAATAAAATGAATAAAGATCAAAAT
1 TAAAATAAAATAAATAAAGATCAAAAT
* *
7510061 CAAAATAAACATAAATTAAA-ATTAAAAT
1 TAAAATAAA-ATAAA-TAAAGATCAAAAT
7510089 TAAAATGAAAA
1 TAAAAT-AAAA
7510100 AAAAACCTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
27 8 0.25
28 17 0.53
29 7 0.22
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (27 bp):
TAAAATAAAATAAATAAAGATCAAAAT
Found at i:7510956 original size:10 final size:10
Alignment explanation
Indices: 7510929--7510999 Score: 58
Period size: 10 Copynumber: 7.3 Consensus size: 10
7510919 ATTTAATAAA
*
7510929 ATAATATATT
1 ATAATATACT
*
7510939 ACAATATACT
1 ATAATATACT
*
7510949 ATACTATA--
1 ATAATATACT
*
7510957 ATAATAAACT
1 ATAATATACT
* *
7510967 ATATTGTACT
1 ATAATATACT
7510977 ATAATATACT
1 ATAATATACT
7510987 A-AATTATACT
1 ATAA-TATACT
7510997 ATA
1 ATA
7511000 CTGATAACAA
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
8 6 0.13
9 2 0.04
10 37 0.80
11 1 0.02
ACGTcount: A:0.49, C:0.10, G:0.01, T:0.39
Consensus pattern (10 bp):
ATAATATACT
Found at i:7510959 original size:33 final size:34
Alignment explanation
Indices: 7510878--7510963 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 34
7510868 ATGGAAAAAG
* *
7510878 AATAAAAACATAATAATAATAATAAACTACAATA
1 AATAATAATATAATAATAATAATAAACTACAATA
* * *
7510912 AATAATAATTTAATAA-AATAATATATTACAATA
1 AATAATAATATAATAATAATAATAAACTACAATA
* *
7510945 TACT-ATACTATAATAATAA
1 -AATAATAATATAATAATAA
7510964 ACTATATTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
33 25 0.60
34 17 0.40
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (34 bp):
AATAATAATATAATAATAATAATAAACTACAATA
Found at i:7512710 original size:12 final size:12
Alignment explanation
Indices: 7512690--7512737 Score: 64
Period size: 11 Copynumber: 4.1 Consensus size: 12
7512680 TCCACTTTGT
7512690 TTTTTTA-TTTA
1 TTTTTTATTTTA
7512701 TTTTTGTATTTTA
1 TTTTT-TATTTTA
*
7512714 TATTTTATTTTA
1 TTTTTTATTTTA
7512726 -TTTTTATTTTA
1 TTTTTTATTTTA
7512737 T
1 T
7512738 ATTATATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 15 0.47
12 9 0.28
13 8 0.25
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:7512737 original size:23 final size:24
Alignment explanation
Indices: 7512692--7512740 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
7512682 CACTTTGTTT
7512692 TTTTATTTATTTTTGTATTTTATA
1 TTTTATTTATTTTTGTATTTTATA
7512716 TTTTATTT-TATTTT-TATTTTATA
1 TTTTATTTAT-TTTTGTATTTTATA
7512739 TT
1 TT
7512741 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (24 bp):
TTTTATTTATTTTTGTATTTTATA
Found at i:7512879 original size:26 final size:25
Alignment explanation
Indices: 7512845--7512902 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
7512835 TTTCTGTTAA
*
7512845 TATTCATATATATATTTTTATTTATC
1 TATT-ATATATATATTATTATTTATC
*
7512871 TAGTTATATATTTATTATTATTTATC
1 TA-TTATATATATATTATTATTTATC
7512897 TATTAT
1 TATTAT
7512903 TATTGTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 4 0.14
26 23 0.79
27 2 0.07
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (25 bp):
TATTATATATATATTATTATTTATC
Found at i:7512917 original size:17 final size:14
Alignment explanation
Indices: 7512857--7512906 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
7512847 TTCATATATA
7512857 TATT-TTTATTTAT
1 TATTATTTATTTAT
*
7512870 CTAGTTATATATTTAT
1 -TA-TTATTTATTTAT
*
7512886 TATTATTTATCTAT
1 TATTATTTATTTAT
7512900 TATTATT
1 TATTATT
7512907 GTTAATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
14 19 0.61
15 4 0.13
16 8 0.26
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (14 bp):
TATTATTTATTTAT
Found at i:7513555 original size:14 final size:16
Alignment explanation
Indices: 7513534--7513570 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
7513524 CAGGTATTTT
7513534 AGAGAGAAAAG-AGAG
1 AGAGAGAAAAGAAGAG
*
7513549 A-AGAGAAAGGAAGAG
1 AGAGAGAAAAGAAGAG
7513564 AGAGAGA
1 AGAGAGA
7513571 GAGGGAATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 8 0.42
15 6 0.32
16 5 0.26
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (16 bp):
AGAGAGAAAAGAAGAG
Found at i:7513876 original size:6 final size:6
Alignment explanation
Indices: 7513865--7513961 Score: 69
Period size: 6 Copynumber: 16.5 Consensus size: 6
7513855 TTTAATATTC
* * * *
7513865 TTTTAT TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTAC TTTTCT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * *
7513911 TTAT-T TTTTATT TTTTAT TTTCAC TTTTAT TTTGT-T TTATTA- TTTTAT
1 TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTT-TAT TT-TTAT TTTTAT
7513959 TTT
1 TTT
7513962 CTTTAAATAA
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
5 15 0.21
6 48 0.68
7 8 0.11
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:7513885 original size:17 final size:16
Alignment explanation
Indices: 7513865--7513961 Score: 77
Period size: 17 Copynumber: 5.6 Consensus size: 16
7513855 TTTAATATTC
7513865 TTTTATTTTTATCTTTA
1 TTTTATTTTTAT-TTTA
*
7513882 TTTTATTTTTATTTTTG
1 TTTTATTTTTA-TTTTA
* * *
7513899 TTTTACTTTTCTTTATT
1 TTTTATTTTTATTT-TA
7513916 TTTTATTTTTTATTTTCA
1 TTTTA-TTTTTATTTT-A
*
7513934 CTTTTATTTTGTTTTATTA
1 -TTTTATTTT-TATT-TTA
7513953 TTTTATTTT
1 TTTTATTTT
7513962 CTTTAAATAA
Statistics
Matches: 65, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
16 3 0.05
17 30 0.46
18 21 0.32
19 9 0.14
20 2 0.03
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.78
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:7513886 original size:5 final size:5
Alignment explanation
Indices: 7513865--7513961 Score: 60
Period size: 5 Copynumber: 18.8 Consensus size: 5
7513855 TTTAATATTC
* *
7513865 TTTTA TTTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTT- CTTTA
1 TTTTA -TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA
*
7513914 TTTT- TTATT- TTTTA TTTTCA CTTTTA TTTTG TTTTA --TTA TTTTA
1 TTTTA TT-TTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA
7513958 TTTT
1 TTTT
7513962 CTTTAAATAA
Statistics
Matches: 75, Mismatches: 6, Indels: 21
0.74 0.06 0.21
Matches are distributed among these distances:
3 3 0.04
4 7 0.09
5 35 0.47
6 26 0.35
7 4 0.05
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:7514098 original size:117 final size:117
Alignment explanation
Indices: 7513977--7514194 Score: 325
Period size: 117 Copynumber: 1.9 Consensus size: 117
7513967 AATAAAATCC
* *
7513977 AAAAAAAAA-ATTTTG-GAGAAAAGTTGAAAGTATTAATTTTCCTCGAAATTAAAAGTTTCCAAA
1 AAAAAAAAAGATTTTGAG-GAAAAGTTGAAAGTATCAATTGTCCTCGAAATT-AAAGTTT-CAAA
7514040 A-AATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAGAATAAATTTAA
63 AGAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAGAATAAATTTAA
* *
7514094 AAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAATTGTCCTTGAAATTAAAGTTTCAAAAGA
1 AAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTGTCCTCGAAATTAAAGTTTCAAAAGA
***
7514159 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTC
66 ATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTC
7514195 CTGCACAAGA
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
116 5 0.05
117 50 0.55
118 35 0.38
119 1 0.01
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (117 bp):
AAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTGTCCTCGAAATTAAAGTTTCAAAAGA
ATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAGAATAAATTTAA
Found at i:7514183 original size:58 final size:58
Alignment explanation
Indices: 7513978--7514192 Score: 220
Period size: 59 Copynumber: 3.7 Consensus size: 58
7513968 ATAAAATCCA
* * * * * *
7513978 AAAAAAAAATTTTGGAGAAAAGTTGAAAGTATTAATTTTCCTCGAAATTAAAAGTTTCC
1 AAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATT-AAAGTTTAC
* * * *
7514037 AAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTT-AAGAATAAA-TTTAAA
1 AAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAA-ATTAAAGTTT-AC
* * * *
7514095 AAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAATTGTCCTTGAAATTAAAGTTT-C
1 AAAAAATA-TTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTAC
**
7514153 AAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAA-AATATTTTTGAAGAAAAGTTGAAAGTATCAATTTT
7514193 TCCTGCACAA
Statistics
Matches: 128, Mismatches: 22, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
57 3 0.02
58 44 0.34
59 76 0.59
60 5 0.04
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (58 bp):
AAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTAC
Found at i:7515456 original size:47 final size:47
Alignment explanation
Indices: 7515387--7515480 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
7515377 AAGATAAGAG
7515387 ATTGTTTACCAATCGGGTATGATTCTACTCTATCTCAAAAAAATATC
1 ATTGTTTACCAATCGGGTATGATTCTACTCTATCTCAAAAAAATATC
* * *
7515434 ATTGTTTACTAATCGGGTATGATTTTACTCTGTCTCAAAAAAATATC
1 ATTGTTTACCAATCGGGTATGATTCTACTCTATCTCAAAAAAATATC
7515481 TATCCTCCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (47 bp):
ATTGTTTACCAATCGGGTATGATTCTACTCTATCTCAAAAAAATATC
Found at i:7524653 original size:8 final size:8
Alignment explanation
Indices: 7524640--7524691 Score: 61
Period size: 8 Copynumber: 6.4 Consensus size: 8
7524630 TGCTTGAATG
7524640 AAAAAATA
1 AAAAAATA
7524648 AAAAAATGAA
1 AAAAAAT--A
7524658 AAAAAATA
1 AAAAAATA
*
7524666 CAAAAATA
1 AAAAAATA
*
7524674 CAAAAATA
1 AAAAAATA
7524682 AAAAAA-A
1 AAAAAATA
7524689 AAA
1 AAA
7524692 GAAAAAAGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
7 4 0.10
8 28 0.70
10 8 0.20
ACGTcount: A:0.85, C:0.04, G:0.02, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:7524696 original size:26 final size:26
Alignment explanation
Indices: 7524641--7524697 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
7524631 GCTTGAATGA
* *
7524641 AAAAATAAAAAAATGAAAAAAAATAC
1 AAAAATAAAAAAATAAAAAAAAAAAC
* *
7524667 AAAAATACAAAAATAAAAAAAAAAAG
1 AAAAATAAAAAAATAAAAAAAAAAAC
7524693 AAAAA
1 AAAAA
7524698 AGTGAATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.84, C:0.04, G:0.04, T:0.09
Consensus pattern (26 bp):
AAAAATAAAAAAATAAAAAAAAAAAC
Found at i:7525814 original size:42 final size:41
Alignment explanation
Indices: 7525705--7526048 Score: 321
Period size: 42 Copynumber: 8.0 Consensus size: 41
7525695 TCAATGAGTA
* * *
7525705 ATTTATTTTTCCAAAGTCATTGAGCCTCTGATTAGAGAAG-
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* *
7525745 ATTTGTTTATCTTTCCAAAGTCATTGAGCCTCTGATTAGAGGAGAC
1 ATTT-ATT-T-TTT-CAAAGTCGTTGAGCCTCTGATTAGAGGAG-C
*
7525791 ATTTATTTTTTGAAAGTCGTTGAGCCTCTGATTAGAGGAGCGTC
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGA--G-C
* * * *
7525835 ATTAATCTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGCC
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG-C
* * ** * *
7525877 ATTTATTTTTTCAAAGTTGTTCAATCTCTGACTAGATGAGCC
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG-C
* *
7525919 ATTTATTTTTTCAAAGTCGTTAAGCCTCTGATTAGATGAGC
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* *
7525960 TTTTATTTATTTTCCAAAGTCGTTGAGCCTCTAATTAGAGGAGC
1 ATTTA-TT-TTTT-CAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* * *
7526004 TTTGTTTATGTTTTTCAAAGTCATTGAGCCTCTGCTTAGAGGAGC
1 ---ATTTAT-TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
7526049 CTTGATCAAA
Statistics
Matches: 255, Mismatches: 34, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
40 4 0.02
41 7 0.03
42 100 0.39
43 9 0.04
44 92 0.36
45 29 0.11
46 9 0.04
47 5 0.02
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (41 bp):
ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
Found at i:7525850 original size:86 final size:85
Alignment explanation
Indices: 7525705--7526048 Score: 359
Period size: 86 Copynumber: 4.0 Consensus size: 85
7525695 TCAATGAGTA
* * * * **
7525705 ATTTATTTTTCCAAAGTCATTGAGCCTCTGATTAGAGAAGATTTGTTTATCTTTCCAAAGTCATT
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTATCTTTCCAAAGTCATT
7525770 GAGCCTCTGATTAGAGGAGAC
66 GAGCCTCTGATTAGAGGAG-C
* * * **
7525791 ATTTATTTTTTGAAAGTCGTTGAGCCTCTGATTAGAGGAGCGTCATTAATCTTTCCAAAGTTGTT
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTATCTTTCCAAAGTCATT
7525856 GAGCCTCTGATTAGAGGAGCC
66 GAGCCTCTGATTAGAGGAG-C
* * ** * * * * *
7525877 ATTTATTTTTTCAAAGTTGTTCAATCTCTGACTAGATGAGC--CATTTATTTTTTCAAAGTCGTT
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTATCTTTCCAAAGTCATT
* *
7525940 AAGCCTCTGATTAGATGAGC
66 GAGCCTCTGATTAGAGGAGC
* * ** * *
7525960 TTTTATTTATTTTCCAAAGTCGTTGAGCCTCTAATTAGAGGAGCTTTGTTTATGTTTTTCAAAGT
1 ATTTA-TT-TTTT-CAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTAT-CTTTCCAAAGT
*
7526025 CATTGAGCCTCTGCTTAGAGGAGC
62 CATTGAGCCTCTGATTAGAGGAGC
7526049 CTTGATCAAA
Statistics
Matches: 213, Mismatches: 39, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
83 5 0.02
84 37 0.17
85 4 0.02
86 131 0.62
88 5 0.02
89 31 0.15
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (85 bp):
ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTATCTTTCCAAAGTCATT
GAGCCTCTGATTAGAGGAGC
Found at i:7525989 original size:44 final size:44
Alignment explanation
Indices: 7525705--7526048 Score: 325
Period size: 44 Copynumber: 7.9 Consensus size: 44
7525695 TCAATGAGTA
* *
7525705 ATTTATTTTTCCAAAGTCATTGAGCCTCTGATTAGAGAAG-ATTT
1 ATTTA-TTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGCATTT
* *
7525749 GTTTATCTTTCCAAAGTCATTGAGCCTCTGATTAGAGGAGACATTT
1 ATTTAT-TTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAG-CATTT
* * *
7525795 A-TT-TTTT-GAAAGTCGTTGAGCCTCTGATTAGAGGAGC-GTC
1 ATTTATTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGCATTT
* *
7525835 ATTAATCTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCATTT
1 ATTTAT-TTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAG-CATTT
* * ** * *
7525881 A-TT-TTTT-CAAAGTTGTTCAATCTCTGACTAGATGAGCCATTT
1 ATTTATTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAG-CATTT
* * *
7525923 A-TT-TTTT-CAAAGTCGTTAAGCCTCTGATTAGATGAGCTTTT
1 ATTTATTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGCATTT
*
7525964 ATTTATTTTCCAAAGTCGTTGAGCCTCTAATTAGAGGAGC-TTT
1 ATTTATTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGCATTT
* * * *
7526007 GTTTATGTTTTTCAAAGTCATTGAGCCTCTGCTTAGAGGAGC
1 ATTTA--TTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
7526049 CTTGATCAAA
Statistics
Matches: 254, Mismatches: 32, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
40 2 0.01
41 7 0.03
42 91 0.36
43 21 0.08
44 92 0.36
45 35 0.14
46 6 0.02
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (44 bp):
ATTTATTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGCATTT
Found at i:7526292 original size:7 final size:7
Alignment explanation
Indices: 7526237--7526318 Score: 55
Period size: 7 Copynumber: 11.4 Consensus size: 7
7526227 CTTTGTTTTT
7526237 TTATTTA
1 TTATTTA
*
7526244 TTTTTGTA
1 TTATT-TA
7526252 TT-TTATA
1 TTATT-TA
7526259 TT-TTATA
1 TTATT-TA
*
7526266 TTTTTTA
1 TTATTTA
7526273 TCT-TTTA
1 T-TATTTA
7526280 TGTATTTA
1 T-TATTTA
7526288 TTATTTA
1 TTATTTA
7526295 CTTATTTA
1 -TTATTTA
7526303 TTA-TTA
1 TTATTTA
*
7526309 CTATTTA
1 TTATTTA
7526316 TTA
1 TTA
7526319 ATATATATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
6 5 0.08
7 40 0.62
8 19 0.30
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (7 bp):
TTATTTA
Found at i:7526294 original size:15 final size:15
Alignment explanation
Indices: 7526282--7526318 Score: 60
Period size: 13 Copynumber: 2.6 Consensus size: 15
7526272 ATCTTTTATG
7526282 TATTTATTATTTACT
1 TATTTATTATTTACT
7526297 TATTTATTA-TTAC-
1 TATTTATTATTTACT
7526310 TATTTATTA
1 TATTTATTA
7526319 ATATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 4 0.18
15 9 0.41
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTTATTATTTACT
Found at i:7526400 original size:14 final size:14
Alignment explanation
Indices: 7526369--7526415 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
7526359 TATTCATATA
7526369 TATATATTTATCTAAT
1 TATATATTTAT-T-AT
7526385 TATATATTTATTAT
1 TATATATTTATTAT
* *
7526399 TATTTATCTATTAT
1 TATATATTTATTAT
7526413 TAT
1 TAT
7526416 TGTTAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 17 0.59
15 1 0.03
16 11 0.38
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (14 bp):
TATATATTTATTAT
Found at i:7527398 original size:21 final size:21
Alignment explanation
Indices: 7527347--7527404 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
7527337 TTAATATTCT
* * *
7527347 TTTATTTTTATCTTTATTTTTT
1 TTTATTTTT-TTTTTACTTTTC
7527369 TTTATTTTTTTTTTACTTTTC
1 TTTATTTTTTTTTTACTTTTC
7527390 TTTATTTTTTATTTT
1 TTTATTTTTT-TTTT
7527405 TTATTTTCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
21 19 0.59
22 13 0.41
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTATTTTTTTTTTACTTTTC
Found at i:7527417 original size:30 final size:30
Alignment explanation
Indices: 7527341--7527442 Score: 115
Period size: 30 Copynumber: 3.5 Consensus size: 30
7527331 GTTTGTTTAA
* *
7527341 TATTCTTTTATTTTTA-TCTTTATTTTTTTT
1 TATTATTTTATTTTCACT-TTTATTTTTTTT
*
7527371 TATT-TTTT-TTTT-ACTTTTCTTTATTTTT
1 TATTATTTTATTTTCACTTTTATTT-TTTTT
*
7527399 TATT-TTTTATTTTCACTTTTATTTTGTTT
1 TATTATTTTATTTTCACTTTTATTTTTTTT
7527428 TATTATTTTATTTTC
1 TATTATTTTATTTTC
7527443 TTTAAATAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
27 7 0.11
28 18 0.28
29 16 0.25
30 23 0.36
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (30 bp):
TATTATTTTATTTTCACTTTTATTTTTTTT
Found at i:7527419 original size:36 final size:36
Alignment explanation
Indices: 7527366--7527441 Score: 93
Period size: 35 Copynumber: 2.1 Consensus size: 36
7527356 ATCTTTATTT
**
7527366 TTTTTTATTTTTTTTTTACTTTT-CTTTATT-TTTTA
1 TTTTTTATTTTACTTTTA-TTTTGCTTTATTATTTTA
*
7527401 TTTTTTATTTTCACTTTTATTTTGTTTTATTATTTTA
1 TTTTTTATTTT-ACTTTTATTTTGCTTTATTATTTTA
7527438 TTTT
1 TTTT
7527442 CTTTAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 15 0.43
36 11 0.31
37 9 0.26
ACGTcount: A:0.13, C:0.05, G:0.01, T:0.80
Consensus pattern (36 bp):
TTTTTTATTTTACTTTTATTTTGCTTTATTATTTTA
Found at i:7527433 original size:13 final size:13
Alignment explanation
Indices: 7527365--7527441 Score: 51
Period size: 12 Copynumber: 6.3 Consensus size: 13
7527355 TATCTTTATT
*
7527365 TTTTTTTATTTT-
1 TTTTATTATTTTA
7527377 TTTT-TTACTTTT-
1 TTTTATTA-TTTTA
*
7527389 CTTTATT-TTTTA
1 TTTTATTATTTTA
7527401 TTTT-TTATTTTCA
1 TTTTATTATTTT-A
* *
7527414 -CTT-TTATTTTG
1 TTTTATTATTTTA
7527425 TTTTATTATTTTA
1 TTTTATTATTTTA
7527438 TTTT
1 TTTT
7527442 CTTTAAATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
11 9 0.17
12 29 0.56
13 14 0.27
ACGTcount: A:0.13, C:0.05, G:0.01, T:0.81
Consensus pattern (13 bp):
TTTTATTATTTTA
Found at i:7527548 original size:58 final size:57
Alignment explanation
Indices: 7527478--7527679 Score: 201
Period size: 58 Copynumber: 3.4 Consensus size: 57
7527468 AATTTTGGGG
7527478 AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAGTTTCCAAAAAATATTTTTGAA
1 AAAAGTTGAAAGTATCAATTTTTCTCGAAATT-AAAGTTTCCAAAAAATATTTTTGAA
* * * * * * * * * *
7527536 AAAAATAGAAAGTATTAATTTTTCT-TAAGAATAAATTTTCAAAAAAAAAAAAGGTTTTGAGG
1 AAAAGTTGAAAGTATCAATTTTTCTCGAA-ATTAAAGTTTC---CAAAAAATA-TTTTTGA-A
* *
7527598 AAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTT-CAAAAGAATATTTTTGGGA
1 AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCCAAAA-AATATTTTT-GAA
7527656 AAAAGTTGAAAGTATCAATTTTTC
1 AAAAGTTGAAAGTATCAATTTTTC
7527680 CTGCACAAGA
Statistics
Matches: 112, Mismatches: 23, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
57 9 0.08
58 55 0.49
59 4 0.04
60 7 0.06
61 6 0.05
62 29 0.26
63 2 0.02
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.35
Consensus pattern (57 bp):
AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCCAAAAAATATTTTTGAA
Found at i:7527552 original size:120 final size:119
Alignment explanation
Indices: 7527438--7527679 Score: 332
Period size: 120 Copynumber: 2.0 Consensus size: 119
7527428 TATTATTTTA
* *
7527438 TTTTCTTTA-AATAAA-ATCCAAAAAAAAATAAA-TTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 TTTTCTTAAGAATAAATATCCAAAAAAAAA-AAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTT
*
7527500 TCTCGAAATTAAAAGTTTCCAAAA-AATATTTTT-GAAAAAAATAGAAAGTATTAAT
65 CCTCGAAATT-AAAGTTT-CAAAAGAATATTTTTGGAAAAAAATAGAAAGTATTAAT
* *
7527555 TTTTCTTAAGAATAAATTTTCAAAAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 TTTTCTTAAGAATAAATATCCAAAAAAAAAAAA-GTTTTGAGGAAAAGTTGAAAGTATCAATTTT
* * * *
7527620 CCTCGAAATTAAAGTTTCAAAAGAATATTTTTGGGAAAAAGTTGAAAGTATCAAT
65 CCTCGAAATTAAAGTTTCAAAAGAATATTTTTGGAAAAAAATAGAAAGTATTAAT
7527675 TTTTC
1 TTTTC
7527680 CTGCACAAGA
Statistics
Matches: 110, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
117 8 0.07
118 14 0.13
119 27 0.25
120 61 0.55
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (119 bp):
TTTTCTTAAGAATAAATATCCAAAAAAAAAAAAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
CTCGAAATTAAAGTTTCAAAAGAATATTTTTGGAAAAAAATAGAAAGTATTAAT
Found at i:7532217 original size:24 final size:24
Alignment explanation
Indices: 7532180--7532281 Score: 120
Period size: 24 Copynumber: 4.2 Consensus size: 24
7532170 AAAATAAAGC
7532180 ATAATAAATCATGCAAATAAATATA
1 ATAA-AAATCATGCAAATAAATATA
*
7532205 ATAAAAATCATGCAAGT--A-ATA
1 ATAAAAATCATGCAAATAAATATA
7532226 ATGCAAAAATTTCATGCAAATAAATATA
1 AT--AAAAA--TCATGCAAATAAATATA
*
7532254 ATAAAAATCATGCAAATAAATATG
1 ATAAAAATCATGCAAATAAATATA
7532278 ATAA
1 ATAA
7532282 TAAAATCTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
21 5 0.07
22 1 0.01
23 5 0.07
24 32 0.48
25 13 0.19
26 5 0.07
27 1 0.01
28 5 0.07
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.26
Consensus pattern (24 bp):
ATAAAAATCATGCAAATAAATATA
Found at i:7532854 original size:17 final size:17
Alignment explanation
Indices: 7532832--7532874 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
7532822 CTTTAAATTT
*
7532832 AAAATTTAAATAAAATC
1 AAAATTTAAAAAAAATC
*
7532849 ATAATTTAAAAAAAAATC
1 AAAATTT-AAAAAAAATC
7532867 AAAATTTA
1 AAAATTTA
7532875 TGTTATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATTTAAAAAAAATC
Found at i:7533240 original size:55 final size:55
Alignment explanation
Indices: 7533152--7533263 Score: 179
Period size: 55 Copynumber: 2.0 Consensus size: 55
7533142 AGAAAAAAAG
* * *
7533152 AAAGAAAGTACAATAGAACATAAGTAAGTACATTACGGATATAGCTATGGATAAC
1 AAAGAAAGTACAATAGAACATAAGCAAGCACATTACGGATATAGCTATAGATAAC
* *
7533207 AAAGAAAGTACAATAGGACATAAGCAAGCACATTACGTATATAGCTATAGATAAC
1 AAAGAAAGTACAATAGAACATAAGCAAGCACATTACGGATATAGCTATAGATAAC
7533262 AA
1 AA
7533264 TCCCAAGTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.21
Consensus pattern (55 bp):
AAAGAAAGTACAATAGAACATAAGCAAGCACATTACGGATATAGCTATAGATAAC
Found at i:7535002 original size:20 final size:19
Alignment explanation
Indices: 7534981--7535027 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
7534971 AGTTTTATTT
*
7534981 TTTTTTGTTT-TTTGTTGA
1 TTTTTTATTTATTTGTTGA
7534999 TTTTCTTATTTATTTGTTGA
1 TTTT-TTATTTATTTGTTGA
7535019 TTTTTTATT
1 TTTTTTATT
7535028 CACATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 10 0.38
20 12 0.46
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.77
Consensus pattern (19 bp):
TTTTTTATTTATTTGTTGA
Found at i:7535903 original size:29 final size:30
Alignment explanation
Indices: 7535871--7535937 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
7535861 TTTTATCTAT
*
7535871 AATAAAATGA-AAA-ATAAAAAAATATAATA
1 AATAAAAT-ATAAATATAAAAAAATATAAAA
* *
7535900 AATATAAATATAAATATAAGAATATATAAAA
1 AATA-AAATATAAATATAAAAAAATATAAAA
7535931 AATAAAA
1 AATAAAA
7535938 ATTAAGTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 5 0.16
30 10 0.31
31 17 0.53
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (30 bp):
AATAAAATATAAATATAAAAAAATATAAAA
Found at i:7535987 original size:17 final size:18
Alignment explanation
Indices: 7535967--7536005 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7535957 TTTTTGTTTT
7535967 AAATAAT-TTTTACAAAA
1 AAATAATATTTTACAAAA
* *
7535984 AAATTATATTTTACAATA
1 AAATAATATTTTACAAAA
7536002 AAAT
1 AAAT
7536006 GAAAAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATAATATTTTACAAAA
Found at i:7538160 original size:91 final size:89
Alignment explanation
Indices: 7537906--7538164 Score: 243
Period size: 91 Copynumber: 2.8 Consensus size: 89
7537896 CTATCACAAT
* * * * * *
7537906 AATAACATTATGCAATAACAATAATAACCAATGCCAAGCAAAGCAGCAAGAGAATGCTGCTTTTC
1 AATAACATTATGCAACAACAACAATAACAAATG-AAAGCAAAGCAACAAGAGAATGTTG-TTTTC
* * *
7537971 TTGCAACTGGATGGTTCTATCATAGT
64 ATACAACTGGATGGTTCTATCATAGC
* * * * * * * * *
7537997 AATAAAATAATGCAACAATAGCAATAACTAATGACAAGCAAAGCAACAAACAAAATGTTCTTAT-
1 AATAACATTATGCAACAACAACAATAACAAATGA-AAGCAAAGCAAC-AAGAGAATGTTGTTTTC
7538061 ATAGCAACTGGATGGTTCTATCATTA-C
64 ATA-CAACTGGATGGTTCTATCA-TAGC
**
7538088 AATAACATTATGCAACAACAACAATAACAAATGAATAATAAAGCAACAAGTAGAATGTTGTTTTC
1 AATAACATTATGCAACAACAACAATAACAAATGAA-AGCAAAGCAACAAG-AGAATGTTGTTTTC
*
7538153 CTACAACTGGAT
64 ATACAACTGGAT
7538165 ATTATGTGTT
Statistics
Matches: 132, Mismatches: 29, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
90 4 0.03
91 116 0.88
92 12 0.09
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (89 bp):
AATAACATTATGCAACAACAACAATAACAAATGAAAGCAAAGCAACAAGAGAATGTTGTTTTCAT
ACAACTGGATGGTTCTATCATAGC
Found at i:7538255 original size:134 final size:133
Alignment explanation
Indices: 7538104--7538351 Score: 295
Period size: 134 Copynumber: 1.8 Consensus size: 133
7538094 ATTATGCAAC
* * * * *
7538104 AACAACAATAACAAATG-AATAATAA-AGCAACAAGTAGAATGTTGTTTTCCTACAACTGGATAT
1 AACAACAATAACAAATGAAAGAAAAATAGC-A-AA-CAGAATGTTGTTTTCCTACAACTAGATAC
*
7538167 TATGTGTTCTATCAAGATAT-AGCAACAAGCAATAACCAATGTCAAGCAATATTATGCAACAACA
63 TATGTGTTCTATCAAGATATAAG-AACAAGCAATAACCAATGCCAAGCAATATTATGCAACAACA
7538231 ACAATAT
127 ACAATAT
* ** * * *
7538238 AACAACAATAACTAATGACAAGAAAAATAGCAAACAGAATGTTGTTTTTTTGCAATTAGATACTG
1 AACAACAATAACAAATGA-AAGAAAAATAGCAAACAGAATGTTGTTTTCCTACAACTAGATACTA
* * *
7538303 TGTGTTCTATCAATATGTAAGAGCAAGCAATAACCAATGCCAAGCAATA
65 TGTGTTCTATCAAGATATAAGAACAAGCAATAACCAATGCCAAGCAATA
7538352 ACAACAATAT
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
134 81 0.85
135 4 0.04
136 7 0.07
137 3 0.03
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.26
Consensus pattern (133 bp):
AACAACAATAACAAATGAAAGAAAAATAGCAAACAGAATGTTGTTTTCCTACAACTAGATACTAT
GTGTTCTATCAAGATATAAGAACAAGCAATAACCAATGCCAAGCAATATTATGCAACAACAACAA
TAT
Found at i:7538548 original size:3 final size:3
Alignment explanation
Indices: 7538542--7538606 Score: 94
Period size: 3 Copynumber: 21.7 Consensus size: 3
7538532 TCTTACATCT
* * *
7538542 ATG ATG ATA ATG ATG ATG GTG ATG ATG ATG ATG ATG ATG ATG GTG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
*
7538590 ATG ATG ATG ATA ATG AT
1 ATG ATG ATG ATG ATG AT
7538607 AATAATAATA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:7538690 original size:3 final size:3
Alignment explanation
Indices: 7538599--7538671 Score: 130
Period size: 3 Copynumber: 24.7 Consensus size: 3
7538589 GATGATGATG
*
7538599 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7538647 ATA ATA ATA AT- ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
7538672 GTCTTACAGT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 65 0.97
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7541342 original size:45 final size:45
Alignment explanation
Indices: 7541278--7541370 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
7541268 TACCAAATGG
*
7541278 CATATCTCTCATAACTAGTACCATTGTACCTTTTACACTTTCTAT
1 CATATCTCTCATAACTAGTACCATTGTACCTTTTACAATTTCTAT
*
7541323 CATATCTCTCATAGCTAGTACCATTGTACCTTTTACAATTTCTAT
1 CATATCTCTCATAACTAGTACCATTGTACCTTTTACAATTTCTAT
7541368 CAT
1 CAT
7541371 TCTTCAATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.27, C:0.26, G:0.05, T:0.42
Consensus pattern (45 bp):
CATATCTCTCATAACTAGTACCATTGTACCTTTTACAATTTCTAT
Found at i:7544786 original size:14 final size:13
Alignment explanation
Indices: 7544769--7544815 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 13
7544759 TACATTAAAA
*
7544769 ATTTATTATTACTT
1 ATTTATTTTTA-TT
7544783 ATTTATCTTTTATT
1 ATTTAT-TTTTATT
7544797 ATTTTATTTTTATT
1 A-TTTATTTTTATT
7544811 ATTTA
1 ATTTA
7544816 ATAATTCCCC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 4 0.13
14 17 0.57
15 9 0.30
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTATTTTTATT
Found at i:7547353 original size:81 final size:81
Alignment explanation
Indices: 7547256--7547404 Score: 190
Period size: 81 Copynumber: 1.8 Consensus size: 81
7547246 CTTTGCTCGG
** * * * * ** *
7547256 AGGTCTTGGAAAATCATTTTAAAATTTGAAGTTTTGCTTGGAGGTCTTGAAAATCTTTTAGAAAT
1 AGGTCTTGGAAAATCATTCAAAAATCTAAAATTTTGCCTAAAGGTCTTGAAAATCATTTAGAAAT
7547321 TTAGGCTTTTACCCGA
66 TTAGGCTTTTACCCGA
* * *
7547337 AGGTCTTTGAAAATCATTCAAAAATCTAAAATTTTGCCTAAAGTTCTTGGAAATCATTTAGAAAT
1 AGGTCTTGGAAAATCATTCAAAAATCTAAAATTTTGCCTAAAGGTCTTGAAAATCATTTAGAAAT
7547402 TTA
66 TTA
7547405 AGATTTTGCC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 56 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (81 bp):
AGGTCTTGGAAAATCATTCAAAAATCTAAAATTTTGCCTAAAGGTCTTGAAAATCATTTAGAAAT
TTAGGCTTTTACCCGA
Found at i:7547411 original size:40 final size:40
Alignment explanation
Indices: 7547256--7547436 Score: 141
Period size: 40 Copynumber: 4.5 Consensus size: 40
7547246 CTTTGCTCGG
* **
7547256 AGGTCTTGGAAAATCATTTTA-AAATTTGAAG-TTTTGCTTGG
1 AGGTCTTGG-AAATCA-TTTAGAAATTT-AAGATTTTGCCTAA
* * * * * **
7547297 AGGTCTTGAAAATCTTTTAGAAATTTAGGCTTTTACCCGA
1 AGGTCTTGGAAATCATTTAGAAATTTAAGATTTTGCCTAA
* * * * *
7547337 AGGTCTTTGAAAATCATTCAAAAATCTAAAATTTTGCCTAA
1 AGGTC-TTGGAAATCATTTAGAAATTTAAGATTTTGCCTAA
* *
7547378 AGTTCTTGGAAATCATTTAGAAATTTAAGATTTTGCCTAG
1 AGGTCTTGGAAATCATTTAGAAATTTAAGATTTTGCCTAA
*
7547418 AGGTATTTGGAAATCATTT
1 AGGT-CTTGGAAATCATTT
7547437 TTTAAAATTG
Statistics
Matches: 110, Mismatches: 26, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
39 6 0.05
40 54 0.49
41 50 0.45
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (40 bp):
AGGTCTTGGAAATCATTTAGAAATTTAAGATTTTGCCTAA
Found at i:7547434 original size:41 final size:40
Alignment explanation
Indices: 7547255--7547524 Score: 133
Period size: 41 Copynumber: 6.6 Consensus size: 40
7547245 TCTTTGCTCG
* * *
7547255 GAGGTCTTGGAAAATCATTTTA-AAATTTGAAG-TTTTGCTTG
1 GAGGTTTTGG-AAATCA-TTTAGAAATTT-AAGATTTTGCCTA
* * * * * * *
7547296 GAGGTCTTGAAAATCTTTTAGAAATTTAGGCTTTTACC-C
1 GAGGTTTTGGAAATCATTTAGAAATTTAAGATTTTGCCTA
* * * * *
7547335 GAAGGTCTTTGAAAATCATTCAAAAATCTAAAATTTTGCCTA
1 G-AGGT-TTTGGAAATCATTTAGAAATTTAAGATTTTGCCTA
*
7547377 -AAGTTCTTGGAAATCATTTAGAAATTTAAGATTTTGCCTA
1 GAGGTT-TTGGAAATCATTTAGAAATTTAAGATTTTGCCTA
*
7547417 GAGGTATTTGGAAATCATTTTTTA-AAATTGT-A-ATTTTTCCTA
1 GAGGT-TTTGGAAATCA---TTTAGAAATT-TAAGATTTTGCCTA
* * * * * * *
7547459 TAGGTTTTGAAAATC-TTTTGAAAATATAAAATTTTGCTTC
1 GAGGTTTTGGAAATCATTTAG-AAATTTAAGATTTTGCCTA
* *
7547499 GAGGTCTTTTGAAATCATTTAAAAAT
1 GAGGT-TTTGGAAATCATTTAGAAAT
7547525 ATGAGATTCT
Statistics
Matches: 175, Mismatches: 36, Indels: 36
0.71 0.15 0.15
Matches are distributed among these distances:
37 3 0.02
38 1 0.01
39 13 0.07
40 63 0.36
41 67 0.38
42 17 0.10
43 6 0.03
44 5 0.03
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.41
Consensus pattern (40 bp):
GAGGTTTTGGAAATCATTTAGAAATTTAAGATTTTGCCTA
Found at i:7547492 original size:40 final size:38
Alignment explanation
Indices: 7547336--7547522 Score: 110
Period size: 40 Copynumber: 4.6 Consensus size: 38
7547326 CTTTTACCCG
* *
7547336 AAGGTCTTTGAAAATCATTCAAAAATCTAAAATTTTGCCT
1 AAGGTATTTGAAAATCATT-TAAAAT-TAAAATTTTGCCT
* * *
7547376 AAAGT-TCTTGGAAATCATTTAGAAATTTAAGATTTTGCCT
1 AAGGTAT-TTGAAAATCATTTA-AAA-TTAAAATTTTGCCT
* ** *
7547416 AGAGGTATTTGGAAATCATTTTTTAAAATTGTAATTTTTCCT
1 A-AGGTATTTGAAAATCA---TTTAAAATTAAAATTTTGCCT
* *
7547458 ATAGGT-TTTGAAAATCTTTTGAAAATATAAAATTTTGCTT
1 A-AGGTATTTGAAAATCATTT-AAAAT-TAAAATTTTGCCT
* *
7547498 CGAGGTCTTTTG-AAATCATTTAAAA
1 -AAGGT-ATTTGAAAATCATTTAAAA
7547523 ATATGAGATT
Statistics
Matches: 116, Mismatches: 18, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
38 3 0.03
39 7 0.06
40 48 0.41
41 31 0.27
42 20 0.17
43 3 0.03
44 4 0.03
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (38 bp):
AAGGTATTTGAAAATCATTTAAAATTAAAATTTTGCCT
Found at i:7547525 original size:41 final size:40
Alignment explanation
Indices: 7547337--7547639 Score: 116
Period size: 41 Copynumber: 7.4 Consensus size: 40
7547327 TTTTACCCGA
* * **
7547337 AGGTC-TTTGAAAATCATTCAAAAATCTAAAATTTTGCCTAA
1 AGGTCTTTTG-AAATCATTTAAAAATATAAAATTTTG-CTCG
* * * * * *
7547378 AGTTC-TTGGAAATCATTTAGAAATTTAAGATTTTGCCTAG
1 AGGTCTTTTGAAATCATTTAAAAATATAAAATTTTG-CTCG
* * * * * * **
7547418 AGGTATTTGGAAATCATTTTTTAAAAT-TGTAATTTTTCCTAT
1 AGGTCTTTTGAAATCA--TTTAAAAATAT-AAAATTTTGCTCG
* *
7547460 AGG--TTTTGAAAATCTTTTGAAAATATAAAATTTTGCTTCG
1 AGGTCTTTTG-AAATCATTTAAAAATATAAAATTTTGC-TCG
* * *
7547500 AGGTCTTTTGAAATCATTTAAAAATATGAGATTCTGCTCGG
1 AGGTCTTTTGAAATCATTTAAAAATATAAAATTTTGCTC-G
* * * ** * * *
7547541 AAGT-TTTTGGAAATTATTCAAAGTTTTACAATTTTGCTCAA
1 AGGTCTTTT-GAAATCATTTAAAAATATAAAATTTTGCTC-G
* * * *
7547582 AGATCTTTTCAAATCATTTAAAAA-ATTGAGATTTTGCTCGG
1 AGGTCTTTTGAAATCATTTAAAAATA-TAAAATTTTGCTC-G
*
7547623 AGGTCTTTAGAAATCAT
1 AGGTCTTTTGAAATCAT
7547640 ACACTCATTC
Statistics
Matches: 192, Mismatches: 57, Indels: 26
0.70 0.21 0.09
Matches are distributed among these distances:
39 15 0.08
40 44 0.23
41 105 0.55
42 16 0.08
43 12 0.06
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.41
Consensus pattern (40 bp):
AGGTCTTTTGAAATCATTTAAAAATATAAAATTTTGCTCG
Found at i:7547549 original size:82 final size:82
Alignment explanation
Indices: 7547463--7547623 Score: 184
Period size: 82 Copynumber: 2.0 Consensus size: 82
7547453 TTCCTATAGG
* * * * *
7547463 TTTTGAAAATCTTTTGAAA-ATATAAAATTTTGCTTC-GAGGTCTTTTGAAATCATTT-AAAAAT
1 TTTTGAAAAT-TATTCAAAGATATAAAATTTTGC-TCAAAGATCTTTTCAAATCATTTAAAAAAT
7547525 ATGAGATTCTGCTCGGAAGT
64 -TGAGATTCTGCTCGGAAGT
* * * *
7547545 TTTTGGAAATTATTCAAAGTTTTACAATTTTGCTCAAAGATCTTTTCAAATCATTTAAAAAATTG
1 TTTTGAAAATTATTCAAAGATATAAAATTTTGCTCAAAGATCTTTTCAAATCATTTAAAAAATTG
*
7547610 AGATTTTGCTCGGA
66 AGATTCTGCTCGGA
7547624 GGTCTTTAGA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
81 8 0.12
82 52 0.79
83 6 0.09
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (82 bp):
TTTTGAAAATTATTCAAAGATATAAAATTTTGCTCAAAGATCTTTTCAAATCATTTAAAAAATTG
AGATTCTGCTCGGAAGT
Done.