Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 44 of 121
Found at i:7823575 original size:18 final size:19
Alignment explanation
Indices: 7823542--7823584 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
7823532 TCCGGAAAAA
7823542 AAAATATTTGGCTTTTTAAT
1 AAAA-ATTTGGCTTTTTAAT
7823562 AAAAATTT-GCTTTTTAAT
1 AAAAATTTGGCTTTTTAAT
7823580 AAAAA
1 AAAAA
7823585 GATATACCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 15 0.65
19 4 0.17
20 4 0.17
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (19 bp):
AAAAATTTGGCTTTTTAAT
Found at i:7823722 original size:9 final size:10
Alignment explanation
Indices: 7823708--7823749 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
7823698 AAATAAATAT
7823708 ATTTTT-TTA
1 ATTTTTATTA
7823717 ATTTTTATTAA
1 ATTTTTATT-A
*
7823728 ATTTATATATA
1 ATTTTTAT-TA
7823739 ATTTTTATTA
1 ATTTTTATTA
7823749 A
1 A
7823750 AATTTTAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 6 0.21
10 5 0.18
11 16 0.57
12 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTATTA
Found at i:7825100 original size:12 final size:13
Alignment explanation
Indices: 7825085--7825147 Score: 76
Period size: 14 Copynumber: 4.8 Consensus size: 13
7825075 TTTAAATATT
7825085 TATTTA-ATTTTA
1 TATTTATATTTTA
7825097 TATTTATATTTATA
1 TATTTATATTT-TA
*
7825111 TATTTATATATATA
1 TATTTATAT-TTTA
7825125 TATTTA-ATTTTA
1 TATTTATATTTTA
*
7825137 TATCTATATTT
1 TATTTATATTT
7825148 AAAAAATAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
12 14 0.32
13 10 0.23
14 19 0.43
15 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (13 bp):
TATTTATATTTTA
Found at i:7825102 original size:6 final size:6
Alignment explanation
Indices: 7825080--7825148 Score: 54
Period size: 6 Copynumber: 11.2 Consensus size: 6
7825070 AAATTTTTAA
*
7825080 ATATTT AT-TTA AT-TTT ATATTT ATATTTAT ATATTT ATATATAT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATA-TT-T ATATTT ATAT-T-T ATATTT
*
7825130 A-ATTTT ATATCT ATATTT A
1 ATA-TTT ATATTT ATATTT A
7825149 AAAAATAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
5 9 0.17
6 27 0.52
7 7 0.13
8 9 0.17
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (6 bp):
ATATTT
Found at i:7825106 original size:18 final size:18
Alignment explanation
Indices: 7825085--7825149 Score: 85
Period size: 18 Copynumber: 3.4 Consensus size: 18
7825075 TTTAAATATT
7825085 TATTTAATTTTATATTTA
1 TATTTAATTTTATATTTA
7825103 TATTTATATATTTATATATATA
1 TATTTA-AT-TTTATAT-T-TA
*
7825125 TATTTAATTTTATATCTA
1 TATTTAATTTTATATTTA
7825143 TATTTAA
1 TATTTAA
7825150 AAAATAATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
18 15 0.36
19 2 0.05
20 14 0.33
21 3 0.07
22 8 0.19
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTAATTTTATATTTA
Found at i:7825107 original size:22 final size:21
Alignment explanation
Indices: 7825080--7825148 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 21
7825070 AAATTTTTAA
7825080 ATATTTATTTAATTTTATATTT
1 ATATTTATTTAATTTTATA-TT
*
7825102 ATATTTATAT-A-TTTATA-T
1 ATATTTATTTAATTTTATATT
*
7825120 ATATATATTTAATTTTATATCT
1 ATATTTATTTAATTTTATAT-T
7825142 ATATTTA
1 ATATTTA
7825149 AAAAATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 9 0.23
19 1 0.03
20 12 0.31
21 1 0.03
22 16 0.41
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (21 bp):
ATATTTATTTAATTTTATATT
Found at i:7825230 original size:43 final size:40
Alignment explanation
Indices: 7825147--7825230 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 40
7825137 TATCTATATT
* * *
7825147 TAAAAAATAATATTTTATTAATTTCGAATTGAATCGAATA
1 TAAAAAATAATATTTTATTAAATTAGAATTGAATCAAATA
7825187 TAAAAAATAATATTTTAATATTAAATTAG-ATTGAATTCAAATA
1 TAAAAAATAATA-TTT--TATTAAATTAGAATTGAA-TCAAATA
7825230 T
1 T
7825231 TTATTATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
40 12 0.32
41 3 0.08
42 6 0.16
43 16 0.43
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (40 bp):
TAAAAAATAATATTTTATTAAATTAGAATTGAATCAAATA
Found at i:7827312 original size:14 final size:13
Alignment explanation
Indices: 7827295--7827335 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 13
7827285 ATGTATATAG
7827295 TTATATATTTATTA
1 TTAT-TATTTATTA
7827309 TTATTATATTATTA
1 TTATTAT-TTATTA
7827323 TTATTTATTTATT
1 TTA-TTATTTATT
7827336 TATTTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.12
14 18 0.72
15 4 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTATTATTTATTA
Found at i:7828408 original size:26 final size:25
Alignment explanation
Indices: 7828349--7828434 Score: 86
Period size: 26 Copynumber: 3.2 Consensus size: 25
7828339 TTATTTAATA
7828349 TTTTTTATCTTTATC-TTATTTTTATTT
1 TTTTTTA-CTTT-TCTTTATTTTTA-TT
7828376 TTGTTTTACTTTTCTTTACTTTTTATT
1 TT-TTTTACTTTTCTTTA-TTTTTATT
*
7828403 TTTTTTA-TTTTTTTTATTATTCTATT
1 TTTTTTACTTTTCTTTATT-TT-TATT
7828429 TTTTTT
1 TTTTTT
7828435 CTAAATAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
24 2 0.04
25 10 0.19
26 17 0.32
27 13 0.25
28 11 0.21
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (25 bp):
TTTTTTACTTTTCTTTATTTTTATT
Found at i:7828409 original size:9 final size:9
Alignment explanation
Indices: 7828395--7828434 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
7828385 TTTTCTTTAC
7828395 TTTTTATTT
1 TTTTTATTT
7828404 TTTTTATTT
1 TTTTTATTT
7828413 TTTTTA-TT
1 TTTTTATTT
* *
7828421 ATTCTATTT
1 TTTTTATTT
7828430 TTTTT
1 TTTTT
7828435 CTAAATAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
8 6 0.23
9 20 0.77
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTATTT
Found at i:7828415 original size:17 final size:17
Alignment explanation
Indices: 7828349--7828434 Score: 59
Period size: 17 Copynumber: 4.9 Consensus size: 17
7828339 TTATTTAATA
*
7828349 TTTTTTATCTTTATCTTAT
1 TTTTTTAT-TTT-TTTTAT
*
7828368 TTTTATT-TTTGTTTTACT
1 TTTT-TTATTTTTTTTA-T
* *
7828386 TTTCTTTACTTTTTAT-T
1 TTT-TTTATTTTTTTTAT
7828403 TTTTTTATTTTTTTTAT
1 TTTTTTATTTTTTTTAT
* *
7828420 TATTCTATTTTTTTT
1 TTTTTTATTTTTTTT
7828435 CTAAATAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
16 10 0.19
17 22 0.42
18 8 0.15
19 11 0.21
20 2 0.04
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (17 bp):
TTTTTTATTTTTTTTAT
Found at i:7828536 original size:58 final size:58
Alignment explanation
Indices: 7828440--7828848 Score: 560
Period size: 58 Copynumber: 7.0 Consensus size: 58
7828430 TTTTTCTAAA
7828440 TAAAAATAAATTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCAAAAAAAA-GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
7828499 TAAAAATAAATTTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
** *
7828557 TGGAAATCAAAGTTTCAAAAAAAAAAGATTTGTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAA-TTTC--AAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* ** * *
7828619 TGAAAATCAAGGTTC-CAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAATTTCAAAAAAAAGATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCT
* *
7828677 TAGAAATAAATTGTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATT-TCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
7828736 TAGAAATAAATTTC-AAAAAAATATTTTTG-GGGAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
7828792 TAAAAAATAAATTTCAAAAAAATA-ATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTC
1 T-AAAAATAAATTTCAAAAAAA-AGATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTC
7828849 TCTACACAAG
Statistics
Matches: 321, Mismatches: 17, Indels: 24
0.89 0.05 0.07
Matches are distributed among these distances:
56 27 0.08
57 32 0.10
58 102 0.32
59 99 0.31
60 6 0.02
61 3 0.01
62 52 0.16
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.33
Consensus pattern (58 bp):
TAAAAATAAATTTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:7829472 original size:15 final size:14
Alignment explanation
Indices: 7829454--7829491 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
7829444 AAAAAGAATT
7829454 AATAAAAATATAATA
1 AATAAAAATATAA-A
*
7829469 AATATAAATATAAA
1 AATAAAAATATAAA
7829483 AATAAAAAT
1 AATAAAAAT
7829492 GCATGAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAAAATATAAA
Found at i:7831134 original size:24 final size:24
Alignment explanation
Indices: 7831083--7831134 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
7831073 TCATTCAAAT
* *
7831083 ATAATATTAATCATGCAATAATAT
1 ATAATATCAATCATGCAATAATAC
*
7831107 ATAATATCATATCATGCAGTAA-AC
1 ATAATATCA-ATCATGCAATAATAC
7831131 ATAA
1 ATAA
7831135 AATTATGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.33
Consensus pattern (24 bp):
ATAATATCAATCATGCAATAATAC
Found at i:7831208 original size:24 final size:23
Alignment explanation
Indices: 7831181--7831232 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
7831171 TAAATATATT
7831181 AATAATCATACAATCACACAAATA
1 AATAATCA-ACAATCACACAAATA
* * *
7831205 AATAAATCAATAATCATACAATTA
1 AAT-AATCAACAATCACACAAATA
7831229 AATA
1 AATA
7831233 TATAATCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 18 0.75
25 5 0.21
ACGTcount: A:0.60, C:0.15, G:0.00, T:0.25
Consensus pattern (23 bp):
AATAATCAACAATCACACAAATA
Found at i:7831276 original size:33 final size:32
Alignment explanation
Indices: 7831234--7831303 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 32
7831224 AATTAAATAT
*
7831234 ATAATCATGCAATT-AATAATATAAATTATGCAA
1 ATAAACATGCAATTAAAT-ATAT-AATTATGCAA
7831267 ATAAACATGCAATTAAATATATAATTATGCAA
1 ATAAACATGCAATTAAATATATAATTATGCAA
7831299 ATAAA
1 ATAAA
7831304 AATATATAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
32 15 0.43
33 17 0.49
34 3 0.09
ACGTcount: A:0.54, C:0.09, G:0.06, T:0.31
Consensus pattern (32 bp):
ATAAACATGCAATTAAATATATAATTATGCAA
Found at i:7831290 original size:20 final size:20
Alignment explanation
Indices: 7831267--7831340 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
7831257 AATTATGCAA
7831267 ATAAACATGCAATTAAATAT
1 ATAAACATGCAATTAAATAT
** *
7831287 ATAATTATGCAAATAAAAATAT
1 ATAAACATGC-AAT-TAAATAT
* *
7831309 ATAAACTATACAAATAAATAT
1 ATAAAC-ATGCAATTAAATAT
* *
7831330 ACAATCATGCA
1 ATAAACATGCA
7831341 TCACACAAAT
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
20 12 0.30
21 13 0.32
22 12 0.30
23 3 0.08
ACGTcount: A:0.57, C:0.11, G:0.04, T:0.28
Consensus pattern (20 bp):
ATAAACATGCAATTAAATAT
Found at i:7831309 original size:22 final size:23
Alignment explanation
Indices: 7831281--7831326 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7831271 ACATGCAATT
* *
7831281 AAATATAT-AATTATGCAAATAA
1 AAATATATAAACTATACAAATAA
7831303 AAATATATAAACTATACAAATAA
1 AAATATATAAACTATACAAATAA
7831326 A
1 A
7831327 TATACAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (23 bp):
AAATATATAAACTATACAAATAA
Found at i:7831323 original size:55 final size:55
Alignment explanation
Indices: 7831213--7831515 Score: 234
Period size: 55 Copynumber: 5.7 Consensus size: 55
7831203 TAAATAAATC
* * * *
7831213 AATAATCATACAATTAAATATATAATCATGC-AATTAATA-ATATAAATTATGCA
1 AATAAACATACAATTAAATATATAATCATGCAAATAAAAATATATAAACTATGCA
* * *
7831266 AATAAACATGCAATTAAATATATAATTATGCAAATAAAAATATATAAACTATACA
1 AATAAACATACAATTAAATATATAATCATGCAAATAAAAATATATAAACTATGCA
* * ** * * *
7831321 AATAAATATACAA-T-CATGCATCA-CA--CAAAT--AAATAAATAATC-ATGCA
1 AATAAACATACAATTAAATATATAATCATGCAAATAAAAATATATAAACTATGCA
* * * * * * * *
7831368 ATTAGACATGCAATTAAATAAATAATCAGGAAAATAATAATAT-TAATAATCAT-CA
1 AATAAACATACAATTAAATATATAATCATGCAAATAAAAATATATAA-ACT-ATGCA
* * * * * *
7831423 AACAAACATGCAATTAAAAATATAATCATGCAAATAAAAAAATATGAACCATGCA
1 AATAAACATACAATTAAATATATAATCATGCAAATAAAAATATATAAACTATGCA
* *
7831478 AATAAATATACAATTAAATATATAATCGTGCAAATAAA
1 AATAAACATACAATTAAATATATAATCATGCAAATAAA
7831516 CATGCAATTA
Statistics
Matches: 189, Mismatches: 47, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
47 13 0.07
48 11 0.06
49 5 0.03
50 7 0.04
52 5 0.03
53 36 0.19
54 13 0.07
55 95 0.50
56 4 0.02
ACGTcount: A:0.56, C:0.11, G:0.05, T:0.27
Consensus pattern (55 bp):
AATAAACATACAATTAAATATATAATCATGCAAATAAAAATATATAAACTATGCA
Found at i:7831466 original size:22 final size:23
Alignment explanation
Indices: 7831438--7831483 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
7831428 ACATGCAATT
*
7831438 AAAAATAT-AATCATGCAAATAA
1 AAAAATATGAACCATGCAAATAA
7831460 AAAAATATGAACCATGCAAATAA
1 AAAAATATGAACCATGCAAATAA
7831483 A
1 A
7831484 TATACAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.63, C:0.11, G:0.07, T:0.20
Consensus pattern (23 bp):
AAAAATATGAACCATGCAAATAA
Found at i:7831511 original size:32 final size:32
Alignment explanation
Indices: 7831472--7831546 Score: 123
Period size: 32 Copynumber: 2.3 Consensus size: 32
7831462 AAATATGAAC
*
7831472 CATGCAAATAAATATACAATTAAATATATAAT
1 CATGCAAATAAACATACAATTAAATATATAAT
* *
7831504 CGTGCAAATAAACATGCAATTAAATATATAAT
1 CATGCAAATAAACATACAATTAAATATATAAT
7831536 CATGCAAATAA
1 CATGCAAATAA
7831547 TAATATATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.53, C:0.12, G:0.07, T:0.28
Consensus pattern (32 bp):
CATGCAAATAAACATACAATTAAATATATAAT
Found at i:7831534 original size:20 final size:22
Alignment explanation
Indices: 7831511--7831557 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
7831501 AATCGTGCAA
*
7831511 ATAAACATGC-AATTA-AATAT
1 ATAAACATGCAAATAATAATAT
*
7831531 ATAATCATGCAAATAATAATAT
1 ATAAACATGCAAATAATAATAT
7831553 ATAAA
1 ATAAA
7831558 TTATGCAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 9 0.41
21 4 0.18
22 9 0.41
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (22 bp):
ATAAACATGCAAATAATAATAT
Found at i:7831586 original size:87 final size:88
Alignment explanation
Indices: 7831399--7831586 Score: 217
Period size: 87 Copynumber: 2.2 Consensus size: 88
7831389 ATAATCAGGA
7831399 AAATAATAATAT-TAATAATCATCAAACAAACATGCAATTAAAAATATAATCATGCAAATAAAAA
1 AAATAATAATATAT-ATAATCATCAAACAAACATGCAATTAAAAATATAATCATGCAAATAAAAA
*
7831463 AATATGAACCATGCAAATAAATAT
65 AATATAAACCATGCAAATAAATAT
* * * *
7831487 ACAAT--TAA-ATATATAATCGTGCAAATAAACATGCAATTAAATATATAATCATGCAAATAATA
1 A-AATAATAATATATATAATCAT-CAAACAAACATGCAATTAAAAATATAATCATGCAAATAAAA
* ** * *
7831549 ATATATAAATTATGC-AAT-CATGT
64 AAATATAAACCATGCAAATAAATAT
7831572 AAATAATAATATATA
1 AAATAATAATATATA
7831587 AGCCATGCAA
Statistics
Matches: 84, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
84 3 0.04
85 4 0.05
86 15 0.18
87 58 0.69
88 1 0.01
89 3 0.04
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.29
Consensus pattern (88 bp):
AAATAATAATATATATAATCATCAAACAAACATGCAATTAAAAATATAATCATGCAAATAAAAAA
ATATAAACCATGCAAATAAATAT
Found at i:7831595 original size:31 final size:31
Alignment explanation
Indices: 7831533--7831596 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
7831523 TTAAATATAT
**
7831533 AATCATGCAAATAATAATATATAAATTATGC
1 AATCATGCAAATAATAATATATAAACCATGC
* *
7831564 AATCATGTAAATAATAATATATAAGCCATGC
1 AATCATGCAAATAATAATATATAAACCATGC
7831595 AA
1 AA
7831597 AATATGCAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.11, G:0.08, T:0.30
Consensus pattern (31 bp):
AATCATGCAAATAATAATATATAAACCATGC
Found at i:7831720 original size:24 final size:23
Alignment explanation
Indices: 7831649--7831722 Score: 71
Period size: 24 Copynumber: 3.1 Consensus size: 23
7831639 AATCATGCTC
7831649 ATAAATATATTAATAATCATAC-A
1 ATAAAT-TATTAATAATCATACAA
* *
7831672 ATCAAATTA-AATATAATCGTACAA
1 AT-AAATTATTA-ATAATCATACAA
*
7831696 ATAAATGTATTAATAATCATGCAA
1 ATAAAT-TATTAATAATCATACAA
7831720 ATA
1 ATA
7831723 TGTTAATAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
22 1 0.02
23 17 0.41
24 22 0.54
25 1 0.02
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAAATTATTAATAATCATACAA
Found at i:7832464 original size:12 final size:12
Alignment explanation
Indices: 7832443--7832476 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
7832433 TTTGACTAAA
7832443 AAAC-AAAAATT
1 AAACTAAAAATT
7832454 AAACTAAAAATT
1 AAACTAAAAATT
7832466 AAACTAAAAAT
1 AAACTAAAAAT
7832477 AATTAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (12 bp):
AAACTAAAAATT
Found at i:7840276 original size:24 final size:24
Alignment explanation
Indices: 7840225--7840276 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
7840215 TCTTGCATCT
*
7840225 CATAATTATACATATCATGTATCT
1 CATAATTATACATATCATGTATCA
*
7840249 CATAATTATACATGA-CATTTATCA
1 CATAATTATACAT-ATCATGTATCA
7840273 CATA
1 CATA
7840277 TAAATTCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.38
Consensus pattern (24 bp):
CATAATTATACATATCATGTATCA
Found at i:7843123 original size:44 final size:44
Alignment explanation
Indices: 7843055--7843230 Score: 212
Period size: 44 Copynumber: 4.0 Consensus size: 44
7843045 CGCGGGTTAT
* * *
7843055 ATAAGGCTCATTTAATCAGAGGCTTAATAACTTTTAGAAAGTAA
1 ATAAGGCTCATCTAATCAAAGGCTTAATAACTTTTAGAAAATAA
* * * *
7843099 ATAATGCTCATCTAATCAAAGGCTTAACAACTTTGAAAAAATAA
1 ATAAGGCTCATCTAATCAAAGGCTTAATAACTTTTAGAAAATAA
* * *
7843143 ATAAGGCTCCTCTAATCAAAGGCTCAATAACTTTTGGAAAATAA
1 ATAAGGCTCATCTAATCAAAGGCTTAATAACTTTTAGAAAATAA
* * *
7843187 ATAAGGCTCCTCTAAGCAAAGGCTTAGA-AACTTTGA-AAAATAA
1 ATAAGGCTCATCTAATCAAAGGCTTA-ATAACTTTTAGAAAATAA
7843230 A
1 A
7843231 GCTCCTCGAC
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
43 8 0.07
44 104 0.92
45 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (44 bp):
ATAAGGCTCATCTAATCAAAGGCTTAATAACTTTTAGAAAATAA
Found at i:7843207 original size:88 final size:87
Alignment explanation
Indices: 7843055--7843230 Score: 246
Period size: 88 Copynumber: 2.0 Consensus size: 87
7843045 CGCGGGTTAT
* * * * * *
7843055 ATAAGGCTCATTTAATCAGAGGCTTAATAACTTTTAGAAAGTAAATAATGCTCATCTAATCAAAG
1 ATAAGGCTCATCTAATCAAAGGCTCAATAACTTTTAGAAAATAAATAAGGCTCATCTAAGCAAAG
7843120 GCTTA-ACAACTTTGAAAAAATAA
66 GCTTAGA-AACTTTG-AAAAATAA
* * *
7843143 ATAAGGCTCCTCTAATCAAAGGCTCAATAACTTTTGGAAAATAAATAAGGCTCCTCTAAGCAAAG
1 ATAAGGCTCATCTAATCAAAGGCTCAATAACTTTTAGAAAATAAATAAGGCTCATCTAAGCAAAG
7843208 GCTTAGAAACTTTGAAAAATAA
66 GCTTAGAAACTTTGAAAAATAA
7843230 A
1 A
7843231 GCTCCTCGAC
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 9 0.12
88 68 0.87
89 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (87 bp):
ATAAGGCTCATCTAATCAAAGGCTCAATAACTTTTAGAAAATAAATAAGGCTCATCTAAGCAAAG
GCTTAGAAACTTTGAAAAATAA
Found at i:7843388 original size:19 final size:18
Alignment explanation
Indices: 7843343--7843392 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
7843333 TAATTCAAAG
*
7843343 ATTCACAAGAATTTTTAA
1 ATTCACAAGAATTTTCAA
* *
7843361 ATTCGCAAGAACTTTTCAG
1 ATTCACAAGAA-TTTTCAA
*
7843380 CTTCACAAGAATT
1 ATTCACAAGAATT
7843393 CACTAAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (18 bp):
ATTCACAAGAATTTTCAA
Found at i:7843814 original size:44 final size:45
Alignment explanation
Indices: 7843709--7843816 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 45
7843699 CTCCTCATTT
* *
7843709 GAGTTCAAAGATTCACATTCAATAAATCTTAGAGTTTCACATCTAA
1 GAGTTCAAAG-TTCTCATTCAATAAATCTTAGAGATTCACATCTAA
* *
7843755 -A-TTCAAATGTTCTCATTTAA-AAAT-TTAGAGATTCTCATCTAA
1 GAGTTCAAA-GTTCTCATTCAATAAATCTTAGAGATTCACATCTAA
7843797 GAGTTCAAAGCTTCTCATTC
1 GAGTTCAAAG-TTCTCATTC
7843817 GAGTTCTAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
42 16 0.30
43 6 0.11
44 29 0.55
45 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (45 bp):
GAGTTCAAAGTTCTCATTCAATAAATCTTAGAGATTCACATCTAA
Found at i:7843896 original size:108 final size:108
Alignment explanation
Indices: 7843692--7843889 Score: 236
Period size: 108 Copynumber: 1.8 Consensus size: 108
7843682 ATCCGAAATT
* * *
7843692 TTCAAAACTCCTCATTTGAGTTCAAAGATTCACATTCAATAAATCTTAGAGTTTCACATCTAAAT
1 TTCAAAACTCCTCATTCGAGTTCAAAGATTCACATTCAATAAATCTTAAAGTTTCACAGCTAAAT
* ** *
7843757 TCAAATGTTCTCATTTAAAAATTTAGAGATTCTCATCTAAGAG
66 TCAAAGGTTCAAATTTAAAAATCTAGAGATTCTCATCTAAGAG
* * * * *
7843800 TTCAAAGCTTCTCATTCGAGTTCTAAGATTCACA-TCTGATAAATCTTAAAGTTTCATAGCTAAA
1 TTCAAAACTCCTCATTCGAGTTCAAAGATTCACATTC-AATAAATCTTAAAGTTTCACAGCTAAA
** *
7843864 TTTGAAGGTTCAAATTTGACAAATCT
65 TTCAAAGGTTCAAATTT-AAAAATCT
7843890 GGGATTCATA
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
107 2 0.03
108 65 0.89
109 6 0.08
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (108 bp):
TTCAAAACTCCTCATTCGAGTTCAAAGATTCACATTCAATAAATCTTAAAGTTTCACAGCTAAAT
TCAAAGGTTCAAATTTAAAAATCTAGAGATTCTCATCTAAGAG
Found at i:7845037 original size:20 final size:18
Alignment explanation
Indices: 7845005--7845068 Score: 51
Period size: 20 Copynumber: 3.4 Consensus size: 18
7844995 CCTTTTCCCT
7845005 TTTTCTCTT-TTTTTTTTCC
1 TTTTCT-TTATTTTTTTT-C
***
7845024 TTTTCTTTCATTTTTTCAAA
1 TTTTCTTT-ATTTTTT-TTC
7845044 TTTTCTTTA-TTTTTTTC
1 TTTTCTTTATTTTTTTTC
7845061 TTTTCTTT
1 TTTTCTTT
7845069 TTTCATTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
17 8 0.22
18 7 0.19
19 7 0.19
20 14 0.39
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTCTTTATTTTTTTTC
Found at i:7845433 original size:13 final size:13
Alignment explanation
Indices: 7845417--7845455 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
7845407 ATGGTATTCA
7845417 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
7845430 TTTTTTTACT-TTT
1 TTTTTTT-CTCTTT
*
7845443 TTTTTTTATCTTT
1 TTTTTTTCTCTTT
7845456 GAGACCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 1 0.04
13 20 0.87
14 2 0.09
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTCTCTTT
Found at i:7845455 original size:14 final size:14
Alignment explanation
Indices: 7845417--7845455 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7845407 ATGGTATTCA
7845417 TTTTTT-TCTCTTTT
1 TTTTTTATCT-TTTT
7845431 TTTTTTA-CTTTTT
1 TTTTTTATCTTTTT
7845444 TTTTTTATCTTT
1 TTTTTTATCTTT
7845456 GAGACCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTATCTTTTT
Found at i:7849467 original size:15 final size:15
Alignment explanation
Indices: 7849447--7849476 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7849437 TTCTAAAAAA
*
7849447 ATATTTTTTTGTTTT
1 ATATTTTTTTATTTT
7849462 ATATTTTTTTATTTT
1 ATATTTTTTTATTTT
7849477 TCATAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
ATATTTTTTTATTTT
Found at i:7850688 original size:12 final size:11
Alignment explanation
Indices: 7850647--7850686 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 11
7850637 TAAATTGTAG
7850647 AATAAAAT-AA
1 AATAAAATAAA
*
7850657 AATAATATAAA
1 AATAAAATAAA
7850668 AATGAAAATAAA
1 AAT-AAAATAAA
7850680 AATAAAA
1 AATAAAA
7850687 ATGGACAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 7 0.27
11 9 0.35
12 10 0.38
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:7854195 original size:2 final size:2
Alignment explanation
Indices: 7854190--7854228 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
7854180 TGTGTGTGTG
* * *
7854190 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TG TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7854229 TTTGAGTGTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7859873 original size:11 final size:11
Alignment explanation
Indices: 7859857--7859888 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
7859847 AACTTGACAC
7859857 TTCTTTTTTTT
1 TTCTTTTTTTT
7859868 TTC-TTTTTTT
1 TTCTTTTTTTT
7859878 TTCTTTTTTTT
1 TTCTTTTTTTT
7859889 GCATAATCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:7860162 original size:44 final size:44
Alignment explanation
Indices: 7859937--7860718 Score: 547
Period size: 44 Copynumber: 17.6 Consensus size: 44
7859927 CTCCCCTAAG
* * * *
7859937 CAGAGCCTC-ACAACTTTTGGAAAAATAAACAAGGCTTCTCTTAAT
1 CAGAGGCTCAACAAC-TTT-GAAAAATAAATAAGGCTCCTCTAAAT
* * * **
7859982 TAAATGCTCAACAACTTTGAAAAATAAATAAATCTCCTCT-AAT
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
* ** * *
7860025 CAAAGGCTCAACAACTTTGAAAAATAAATAAAACTCAT-TTAAT
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
* * * *
7860068 CAGAGGCTTAACAACTTTGAAAAATAAACAAGACTCTTCT-AAT
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
* *
7860111 CAAAGGCTCAACAACTTTGAAAAAATAAATAAGGCTCCCCTAAAT
1 CAGAGGCTCAACAACTTTG-AAAAATAAATAAGGCTCCTCTAAAT
***** *
7860156 -AGAGGCTCAACAACTTTGAAAAACAACTTTGAAAAATAAATAAAGCTCCTCTAAT
1 CAGAGGCTCAACAACTTTG--AAA-AA---T---AAAT-AAGGCTCCT-CT-AAAT
* * ** * *
7860211 CAAAAGCTCAATGACTTTGAAAAATAAACAAGGCTCTTCT-AAT
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
* * * * *
7860254 CATAGGCTCAACATCTTTGAAAAATAAATAAAGTTCCTCTAGA-
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
* * * * **
7860297 CAAAGGTTCAACAACTTTGAAAAAATAAATAATGTTATTCTAAA-
1 CAGAGGCTCAACAACTTTG-AAAAATAAATAAGGCTCCTCTAAAT
* * * *
7860341 CAGAGGCTTAACAACTTTGGAAAATAAATAAGGCTTCTTTAAA-
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
* ** * * *
7860384 CAGAGGCTCAATGATTTTTAAAAAATAAACAAAGCTCCTCT-AAT
1 CAGAGGCTCAA-CAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
* *
7860428 CAGAGGCTCGACAACTTTGAAAAATAAATAATGCTCCTCTAAA-
1 CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
*
7860471 CAGAGGCTCAACAACTTTGAAAAAATAAAT-AGGACTCCT-TTAAT
1 CAGAGGCTCAACAACTTTG-AAAAATAAATAAGG-CTCCTCTAAAT
* * * * *
7860515 TAGAGGCTTAATAACTTTTGAAAAATAAATAAGGCTCAT-TTAAT
1 CAGAGGCTCAACAAC-TTTGAAAAATAAATAAGGCTCCTCTAAAT
* * * * * *
7860559 CAGAGGCTTAATAACTTTTAGAAAGTAAATAATGCTCATCT-AAT
1 CAGAGGCTCAACAACTTTGA-AAAATAAATAAGGCTCCTCTAAAT
* *
7860603 CAAAGGCTTAACAACTTTGAAAAAATAAATAAGGCTCCTCT-AAT
1 CAGAGGCTCAACAACTTTG-AAAAATAAATAAGGCTCCTCTAAAT
* * * *
7860647 CAAAGGCTCAATAACTTTTGGAAAATAAATAAGGCTCCTCT-AAG
1 CAGAGGCTCAACAAC-TTTGAAAAATAAATAAGGCTCCTCTAAAT
* *
7860691 CAAAGGCTTAGA-AACTTTGAAAAATAAA
1 CAGAGGCTCA-ACAACTTTGAAAAATAAA
7860719 GCTCCTCGAC
Statistics
Matches: 597, Mismatches: 108, Indels: 66
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.00
43 235 0.39
44 284 0.48
45 31 0.05
46 10 0.02
47 3 0.01
49 1 0.00
50 1 0.00
52 4 0.01
53 5 0.01
54 5 0.01
55 3 0.01
56 14 0.02
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (44 bp):
CAGAGGCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAAT
Found at i:7860182 original size:13 final size:13
Alignment explanation
Indices: 7860164--7860191 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7860154 ATAGAGGCTC
7860164 AACAACTTTGAAA
1 AACAACTTTGAAA
7860177 AACAACTTTGAAA
1 AACAACTTTGAAA
7860190 AA
1 AA
7860192 TAAATAAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AACAACTTTGAAA
Found at i:7860220 original size:56 final size:57
Alignment explanation
Indices: 7860120--7860234 Score: 153
Period size: 56 Copynumber: 2.0 Consensus size: 57
7860110 TCAAAGGCTC
* * *
7860120 AACAACTTTGAAAAAATAAATAAGGCTCCCCTAAATAGAGGCTCAACAACTTTGAAA
1 AACAACTTTGAAAAAATAAATAAAGCTCCCCTAAATAAAAGCTCAACAACTTTGAAA
* **
7860177 AACAACTTTG-AAAAATAAATAAAGCTCCTCT-AATCAAAAGCTCAATGACTTTGAAA
1 AACAACTTTGAAAAAATAAATAAAGCTCCCCTAAAT-AAAAGCTCAACAACTTTGAAA
7860233 AA
1 AA
7860235 TAAACAAGGC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
55 3 0.06
56 38 0.75
57 10 0.20
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.23
Consensus pattern (57 bp):
AACAACTTTGAAAAAATAAATAAAGCTCCCCTAAATAAAAGCTCAACAACTTTGAAA
Found at i:7860321 original size:143 final size:143
Alignment explanation
Indices: 7860034--7860320 Score: 405
Period size: 143 Copynumber: 2.0 Consensus size: 143
7860024 TCAAAGGCTC
* * * *
7860034 AACAACTTTGAAAAATAAATAAAACTCATTTAATCAGAGGCTTAACAACTTTGAAAAATAAACAA
1 AACAACTTTGAAAAATAAATAAAACTCATCTAATCAAAAGCTCAACAACTTTGAAAAATAAACAA
* * *
7860099 GACTCTTCTAATCAAAGGCTCAACAACTTTGAAAAAATAAATAAGGCTCCCCTAAATAGAGGCTC
66 GACTCTTCTAATCAAAGGCTCAACAACTTTGAAAAAATAAATAAAGCTCCCCTAAACAAAGGCTC
7860164 AACAACTTTGAAA
131 AACAACTTTGAAA
* * **
7860177 AACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAAAAGCTCAATGACTTTGAAAAATAAACAA
1 AACAACTTTGAAAAATAAATAAAACTCATCTAATCAAAAGCTCAACAACTTTGAAAAATAAACAA
* * * * * * *
7860242 GGCTCTTCTAATCATAGGCTCAACATCTTTG-AAAAATAAATAAAGTTCCTCTAGACAAAGGTTC
66 GACTCTTCTAATCAAAGGCTCAACAACTTTGAAAAAATAAATAAAGCTCCCCTAAACAAAGGCTC
7860306 AACAACTTTGAAA
131 AACAACTTTGAAA
7860319 AA
1 AA
7860321 ATAAATAATG
Statistics
Matches: 126, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
142 41 0.33
143 85 0.67
ACGTcount: A:0.47, C:0.18, G:0.10, T:0.25
Consensus pattern (143 bp):
AACAACTTTGAAAAATAAATAAAACTCATCTAATCAAAAGCTCAACAACTTTGAAAAATAAACAA
GACTCTTCTAATCAAAGGCTCAACAACTTTGAAAAAATAAATAAAGCTCCCCTAAACAAAGGCTC
AACAACTTTGAAA
Found at i:7860367 original size:229 final size:232
Alignment explanation
Indices: 7859946--7860626 Score: 598
Period size: 229 Copynumber: 3.0 Consensus size: 232
7859936 GCAGAGCCTC
* * * * *
7859946 ACAACTTTTGGAAAAATAAACAAGGCTTCTCTTAATTAAATGCTCAACAACTTTGAAAAATAAAT
1 ACAACTTTTGGAAAAATAAACAAAGCTCCTCTTAATCAAAAGCTCAACAACTTTGAAAAATAAAC
* * *
7860011 AAATCTCCTCTAATCAAAGGCTCAACAACTTTGAAAAATAAATAAAACTCATTTAATCAGAGGCT
66 AAAGCTCCTCTAATCAAAGGCTCAACAACTTTGAAAAATAAATAAAACTCATCTAATCAAAGGCT
* *
7860076 TAACAACTTTGAAAAATAAACAAGACTCTTCTAATCAAAGGCTCAACAACTTTGAAAAAATAAAT
131 TAACAACTTTGAAAAATAAACAAGACTATTCTAAACAAAGGCTCAACAACTTTGAAAAAATAAAT
*
7860141 AAGGCTCCCCTAAATAGAGGCTCAACAACTTTGAAAA
196 AAGGCTCCCCTAAACAGAGGCTCAACAACTTTGAAAA
* **
7860178 ACAAC-TTT-GAAAAATAAATAAAGCTCCTC-TAATCAAAAGCTCAATGACTTTGAAAAATAAAC
1 ACAACTTTTGGAAAAATAAACAAAGCTCCTCTTAATCAAAAGCTCAACAACTTTGAAAAATAAAC
* * * * ** *
7860240 AAGGCTCTTCTAATCATAGGCTCAACATCTTTGAAAAATAAATAAAGTTCCTCTAGA-CAAAGG-
66 AAAGCTCCTCTAATCAAAGGCTCAACAACTTTGAAAAATAAATAAAACTCATCTA-ATCAAAGGC
* * * * *
7860303 TTCAACAACTTTGAAAAAATAAATAATG-TTATTCTAAACAGAGGCTTAACAACTTTG-GAAAAT
130 TT-AACAACTTTG-AAAAATAAACAA-GACTATTCTAAACAAAGGCTCAACAACTTTGAAAAAAT
* **
7860366 AAATAAGGCTTCTTTAAACAGAGGCT---CAA---TG----
192 AAATAAGGCTCCCCTAAACAGAGGCTCAACAACTTTGAAAA
** * * * *
7860397 ---A-TTTTTAAAAAATAAACAAAGCTCCTC-TAATCAGAGGCTCGACAACTTTGAAAAATAAAT
1 ACAACTTTTGGAAAAATAAACAAAGCTCCTCTTAATCAAAAGCTCAACAACTTTGAAAAATAAAC
* * * ** * * * *
7860457 AATGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAATAGGACTCCTTTAATTAGAGGC
66 AAAGCTCCTCTAATCAAAGGCTCAACAACTTTG-AAAAATAAATAAAACTCATCTAATCAAAGGC
* * * * * * * * * *
7860522 TTAATAACTTTTGAAAAATAAATAAGGCTCATT-TAATCAGAGGCTTAATAACTTTTAGAAAGTA
130 TTAACAAC-TTTGAAAAATAAACAAGACT-ATTCTAAACAAAGGCTCAACAACTTTGAAAAAATA
* ** * * *
7860586 AATAATGCTCATCTAATCAAAGGCTTAACAACTTTGAAAA
193 AATAAGGCTCCCCTAAACAGAGGCTCAACAACTTTGAAAA
7860626 A
1 A
7860627 ATAAATAAGG
Statistics
Matches: 364, Mismatches: 61, Indels: 50
0.77 0.13 0.11
Matches are distributed among these distances:
216 4 0.01
217 76 0.21
218 59 0.16
219 34 0.09
222 3 0.01
223 2 0.01
225 2 0.01
226 3 0.01
228 2 0.01
229 116 0.32
230 54 0.15
231 4 0.01
232 5 0.01
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (232 bp):
ACAACTTTTGGAAAAATAAACAAAGCTCCTCTTAATCAAAAGCTCAACAACTTTGAAAAATAAAC
AAAGCTCCTCTAATCAAAGGCTCAACAACTTTGAAAAATAAATAAAACTCATCTAATCAAAGGCT
TAACAACTTTGAAAAATAAACAAGACTATTCTAAACAAAGGCTCAACAACTTTGAAAAAATAAAT
AAGGCTCCCCTAAACAGAGGCTCAACAACTTTGAAAA
Found at i:7860371 original size:47 final size:44
Alignment explanation
Indices: 7860177--7860501 Score: 207
Period size: 43 Copynumber: 7.5 Consensus size: 44
7860167 AACTTTGAAA
* * * * *
7860177 AACAACTTTG-AAAAATAAATAAAGCTCCTCTAATCAAAAGCTC
1 AACAACTTTGAAAAAATAAATAAAGTTACTCTAAACAAAGGTTC
** * * * * * *
7860220 AATGACTTTG-AAAAATAAACAAGGCT-CTTCTAATCATAGGCTC
1 AACAACTTTGAAAAAATAAATAAAGTTAC-TCTAAACAAAGGTTC
* * *
7860263 AACATCTTTG-AAAAATAAATAAAGTTCCTCTAGACAAAGGTTC
1 AACAACTTTGAAAAAATAAATAAAGTTACTCTAAACAAAGGTTC
* * *
7860306 AACAACTTTGAAAAAATAAATAATGTTATTCTAAACAGAGGCTT-
1 AACAACTTTGAAAAAATAAATAAAGTTACTCTAAACAAAGG-TTC
* * * * *
7860350 AACAACTTTG-GAAAATAAATAAGGCTT-CTTTAAACAGAGGCTC
1 AACAACTTTGAAAAAATAAATAAAG-TTACTCTAAACAAAGGTTC
** * * * * * * * *
7860393 AATGATTTTTAAAAAATAAACAAAGCTCCTCTAATCAGAGGCTC
1 AACAACTTTGAAAAAATAAATAAAGTTACTCTAAACAAAGGTTC
* * * * * *
7860437 GACAACTTTG-AAAAATAAATAATGCTCCTCTAAACAGAGGCTC
1 AACAACTTTGAAAAAATAAATAAAGTTACTCTAAACAAAGGTTC
7860480 AACAACTTTGAAAAAATAAATA
1 AACAACTTTGAAAAAATAAATA
7860502 GGACTCCTTT
Statistics
Matches: 227, Mismatches: 46, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
42 2 0.01
43 144 0.63
44 79 0.35
45 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (44 bp):
AACAACTTTGAAAAAATAAATAAAGTTACTCTAAACAAAGGTTC
Found at i:7860575 original size:88 final size:87
Alignment explanation
Indices: 7860177--7860718 Score: 552
Period size: 87 Copynumber: 6.2 Consensus size: 87
7860167 AACTTTGAAA
* * * * * *
7860177 AACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAAAAGCTCAATGACTTTG-AAAAATAAACA
1 AACAACTTTGAAAAATAAATAAGGCTCCTCTAAACAGAGGCTCAATAACTTTGAAAAAATAAATA
* * *
7860241 AGGCTCTTCTAATCATAGGCTC
66 AGGCTCCTCTAATCAGAGGCTT
* * * * * * *
7860263 AACATCTTTGAAAAATAAATAAAGTTCCTCTAGACAAAGGTTCAACAACTTTGAAAAAATAAATA
1 AACAACTTTGAAAAATAAATAAGGCTCCTCTAAACAGAGGCTCAATAACTTTGAAAAAATAAATA
* * ** *
7860328 ATGTTATTCTAAACAGAGGCTT
66 AGGCTCCTCTAATCAGAGGCTT
* * * * * * *
7860350 AACAACTTTGGAAAATAAATAAGGCTTCTTTAAACAGAGGCTCAATGATTTTTAAAAAATAAACA
1 AACAACTTTGAAAAATAAATAAGGCTCCTCTAAACAGAGGCTCAATAACTTTGAAAAAATAAATA
* *
7860415 AAGCTCCTCTAATCAGAGGCTC
66 AGGCTCCTCTAATCAGAGGCTT
* * *
7860437 GACAACTTTGAAAAATAAATAATGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAAT-
1 AACAACTTTGAAAAATAAATAAGGCTCCTCTAAACAGAGGCTCAATAACTTTGAAAAAATAAATA
* *
7860501 AGGACTCCTTTAATTAGAGGCTT
66 AGG-CTCCTCTAATCAGAGGCTT
* * * * * * * *
7860524 AATAACTTTTGAAAAATAAATAAGGCTCATTTAATCAGAGGCTTAATAACTTTTAGAAAGTAAAT
1 AACAAC-TTTGAAAAATAAATAAGGCTCCTCTAAACAGAGGCTCAATAACTTTGAAAAAATAAAT
* * *
7860589 AATGCTCATCTAATCAAAGGCTT
65 AAGGCTCCTCTAATCAGAGGCTT
* * *
7860612 AACAACTTTGAAAAAATAAATAAGGCTCCTCTAATCAAAGGCTCAATAACTTTTG-GAAAATAAA
1 AACAACTTTG-AAAAATAAATAAGGCTCCTCTAAACAGAGGCTCAATAAC-TTTGAAAAAATAAA
* *
7860676 TAAGGCTCCTCTAAGCAAAGGCTT
64 TAAGGCTCCTCTAATCAGAGGCTT
7860700 AGA-AACTTTGAAAAATAAA
1 A-ACAACTTTGAAAAATAAA
7860719 GCTCCTCGAC
Statistics
Matches: 374, Mismatches: 75, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
86 47 0.13
87 180 0.48
88 141 0.38
89 6 0.02
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.27
Consensus pattern (87 bp):
AACAACTTTGAAAAATAAATAAGGCTCCTCTAAACAGAGGCTCAATAACTTTGAAAAAATAAATA
AGGCTCCTCTAATCAGAGGCTT
Found at i:7860876 original size:19 final size:18
Alignment explanation
Indices: 7860831--7860880 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
7860821 TAATTCAAAG
*
7860831 ATTCACAAGAATTTTTAA
1 ATTCACAAGAATTTTCAA
* *
7860849 ATTCGCAAGAACTTTTCAG
1 ATTCACAAGAA-TTTTCAA
*
7860868 CTTCACAAGAATT
1 ATTCACAAGAATT
7860881 CACTAAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (18 bp):
ATTCACAAGAATTTTCAA
Found at i:7861303 original size:44 final size:45
Alignment explanation
Indices: 7861198--7861305 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 45
7861188 CTCCTCATTT
* *
7861198 GAGTTCAAAGATTCACATTCAATAAATCTTAGAGTTTCACATCTAA
1 GAGTTCAAAG-TTCTCATTCAATAAATCTTAGAGATTCACATCTAA
* *
7861244 -A-TTCAAATGTTCTCATTTAA-AAAT-TTAGAGATTCTCATCTAA
1 GAGTTCAAA-GTTCTCATTCAATAAATCTTAGAGATTCACATCTAA
7861286 GAGTTCAAAGCTTCTCATTC
1 GAGTTCAAAG-TTCTCATTC
7861306 GAGTTCTAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
42 16 0.30
43 6 0.11
44 29 0.55
45 2 0.04
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (45 bp):
GAGTTCAAAGTTCTCATTCAATAAATCTTAGAGATTCACATCTAA
Found at i:7861385 original size:108 final size:109
Alignment explanation
Indices: 7861171--7861407 Score: 239
Period size: 108 Copynumber: 2.2 Consensus size: 109
7861161 TTAGAATTTC
* * * * * *
7861171 ATCCGAAATTTTCAAAACTCCTCATTTGAGTTCAAAGATTCACATTCAATAAATCTTAGAGTTTC
1 ATCCAAAATGTTCAAAGCTTCTCATTCGAGTTCAAAGATTCACATTCAATAAATCTTAAAGTTTC
* * ** *
7861236 ACATCTAAATTCAAATGTTCTCATTTAAAAATTTAGAGATTC-T
66 ACAGCTAAATTCAAAGGTTCAAATTTAAAAATCTAGAGATTCAT
* * * *
7861279 CATCTAAGA-GTTCAAAGCTTCTCATTCGAGTTCTAAGATTCACA-TCTGATAAATCTTAAAGTT
1 -ATCCAAAATGTTCAAAGCTTCTCATTCGAGTTCAAAGATTCACATTC-AATAAATCTTAAAGTT
* ** * *
7861342 TCATAGCTAAATTTGAAGGTTCAAATTTGACAAATCT-GGGATTCAT
64 TCACAGCTAAATTCAAAGGTTCAAATTT-AAAAATCTAGAGATTCAT
7861388 ATCCAAAATGTTCAAAGCTT
1 ATCCAAAATGTTCAAAGCTT
7861408 TTCAAAAATT
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
107 2 0.02
108 77 0.75
109 23 0.23
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.35
Consensus pattern (109 bp):
ATCCAAAATGTTCAAAGCTTCTCATTCGAGTTCAAAGATTCACATTCAATAAATCTTAAAGTTTC
ACAGCTAAATTCAAAGGTTCAAATTTAAAAATCTAGAGATTCAT
Found at i:7862919 original size:12 final size:12
Alignment explanation
Indices: 7862902--7862932 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7862892 ATGGTATTCA
7862902 TTTTTTTCTTTT
1 TTTTTTTCTTTT
*
7862914 TTTTTTACTTTT
1 TTTTTTTCTTTT
7862926 TTTTTTT
1 TTTTTTT
7862933 TACTCTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.06, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:7862940 original size:16 final size:14
Alignment explanation
Indices: 7862910--7862936 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7862900 CATTTTTTTC
7862910 TTTTTTTTTTACTT
1 TTTTTTTTTTACTT
7862924 TTTTTTTTTTACT
1 TTTTTTTTTTACT
7862937 CTTTGAGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTTTTTACTT
Found at i:7866953 original size:15 final size:15
Alignment explanation
Indices: 7866933--7866962 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7866923 TTCTAAAAAA
*
7866933 ATATTTTTTTGTTTT
1 ATATTTTTTTATTTT
7866948 ATATTTTTTTATTTT
1 ATATTTTTTTATTTT
7866963 TCATAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
ATATTTTTTTATTTT
Found at i:7868029 original size:43 final size:43
Alignment explanation
Indices: 7867962--7868076 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
7867952 CCCTTTTTAG
* * * *
7867962 TCAGGGGCTCAACAACTTTGAAAAATAAATAAAGCTTCTCTAA
1 TCAGAGGCTCAACAACTTTAAAAAATAAACAAAGCTCCTCTAA
*
7868005 TCAGAGGCTTAACAACTTTAAAAAATAAACAAAGCTCCTCTAA
1 TCAGAGGCTCAACAACTTTAAAAAATAAACAAAGCTCCTCTAA
* ** *
7868048 T-ATGAGACTCAATGACTTTGAAAAATAAA
1 TCA-GAGGCTCAACAACTTTAAAAAATAAA
7868077 ATAATATCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 1 0.02
43 60 0.98
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.25
Consensus pattern (43 bp):
TCAGAGGCTCAACAACTTTAAAAAATAAACAAAGCTCCTCTAA
Found at i:7868149 original size:6 final size:6
Alignment explanation
Indices: 7868125--7868163 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
7868115 ATTGTAGAAT
*
7868125 AAAAT- AAAAT- AATATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT
7868164 GGACAATTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:7872024 original size:14 final size:14
Alignment explanation
Indices: 7872005--7872034 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7871995 CTTGGACCCA
7872005 CGAACCTAGAACCT
1 CGAACCTAGAACCT
*
7872019 CGAACCTGGAACCT
1 CGAACCTAGAACCT
7872033 CG
1 CG
7872035 CTCTGATACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.37, G:0.20, T:0.13
Consensus pattern (14 bp):
CGAACCTAGAACCT
Found at i:7873950 original size:2 final size:2
Alignment explanation
Indices: 7873945--7873977 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7873935 TGTGTGTGTG
*
7873945 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7873978 TTTGAGTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7877379 original size:21 final size:22
Alignment explanation
Indices: 7877333--7877381 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
7877323 ATCTGATGAG
* *
7877333 ATAAAAAATAATTATATTAAAG
1 ATAAAAAATAATTATATGAAAA
7877355 ATAAAAAAT-A-TATATGAATAA
1 ATAAAAAATAATTATATGAA-AA
7877376 ATAAAA
1 ATAAAA
7877382 TATGCAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.29
21 8 0.33
22 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (22 bp):
ATAAAAAATAATTATATGAAAA
Found at i:7877779 original size:3 final size:3
Alignment explanation
Indices: 7877759--7877823 Score: 62
Period size: 3 Copynumber: 22.0 Consensus size: 3
7877749 TTAAAATTAT
* * * *
7877759 TAA TTA TAA TAG TAAA TAA TAG TAA TAA AAA TAA TAA -AA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
7877804 -AA TAA TAA TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
7877824 ATATATTTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
2 4 0.08
3 43 0.88
4 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:7877799 original size:8 final size:8
Alignment explanation
Indices: 7877781--7877811 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
7877771 TAAATAATAG
7877781 TAATAAAAA
1 TAAT-AAAA
7877790 TAATAAAA
1 TAATAAAA
7877798 TAATAAAA
1 TAATAAAA
7877806 TAATAA
1 TAATAA
7877812 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TAATAAAA
Found at i:7877837 original size:20 final size:20
Alignment explanation
Indices: 7877764--7877824 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
7877754 ATTATTAATT
* *
7877764 ATAATAGTAAATAATAGTAATA
1 ATAATAATAAA-AATAATAA-A
*
7877786 AAAATAAT-AAAATAATAAA
1 ATAATAATAAAAATAATAAA
7877805 ATAATAATAAAAATAATAAA
1 ATAATAATAAAAATAATAAA
7877825 TATATTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 8 0.24
20 18 0.53
21 2 0.06
22 6 0.18
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
ATAATAATAAAAATAATAAA
Found at i:7879302 original size:3 final size:3
Alignment explanation
Indices: 7879296--7879338 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
7879286 TAAAAAAAGC
7879296 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7879339 AATTAATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7879547 original size:23 final size:21
Alignment explanation
Indices: 7879491--7879551 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
7879481 AAATCAAACC
*
7879491 CTAAACACCCTAAACCTTAAAAT
1 CTAAAC-CCC-AAACCTTAAAAA
* *
7879514 CAAAACTCCAAACCTTCATAAAA
1 CTAAACCCCAAACCTT-A-AAAA
7879537 CTAAACCCCAAACCT
1 CTAAACCCCAAACCT
7879552 CCAAACCCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
21 7 0.23
22 3 0.10
23 21 0.68
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.18
Consensus pattern (21 bp):
CTAAACCCCAAACCTTAAAAA
Found at i:7879569 original size:28 final size:28
Alignment explanation
Indices: 7879539--7879699 Score: 114
Period size: 28 Copynumber: 5.6 Consensus size: 28
7879529 TCATAAAACT
*
7879539 AAACCCCAAACCTCCAAACCCTAAAATT
1 AAACCCCAAACCTCCAAACCCTAAAATA
* *
7879567 AAACCCTAAATCCTCTAAACCCTAAAACATCA
1 AAACCCCAAA-CCTCCAAACCCT-AAA-AT-A
* * * *
7879599 AAACCCTAAA-ATCAAAACCCTAAAACCA
1 AAACCCCAAACCTCCAAACCCTAAAA-TA
** *
7879627 AAACTTCAAACCT-CAAACTCTAAAATCA
1 AAACCCCAAACCTCCAAACCCTAAAAT-A
*
7879655 AAACCCCAAATCT-CAAACCCTAAAATTA
1 AAACCCCAAACCTCCAAACCCTAAAA-TA
* *
7879683 AAAACCTAAACC-CCAAA
1 AAACCCCAAACCTCCAAA
7879700 ATCTGAAACT
Statistics
Matches: 104, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
28 64 0.62
29 16 0.15
30 12 0.12
31 2 0.02
32 10 0.10
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.16
Consensus pattern (28 bp):
AAACCCCAAACCTCCAAACCCTAAAATA
Found at i:7879587 original size:16 final size:15
Alignment explanation
Indices: 7879537--7879622 Score: 79
Period size: 16 Copynumber: 5.8 Consensus size: 15
7879527 CTTCATAAAA
* *
7879537 CTAAACCCCAAACCT
1 CTAAACCCTAAACAT
*
7879552 CCAAACCCTAAA-AT
1 CTAAACCCTAAACAT
*
7879566 -TAAACCCTAAATCCT
1 CTAAACCCTAAA-CAT
7879581 CTAAACCCTAAAACAT
1 CTAAACCCT-AAACAT
*
7879597 CAAAACCCTAAA-AT
1 CTAAACCCTAAACAT
*
7879611 CAAAACCCTAAA
1 CTAAACCCTAAA
7879623 ACCAAAACTT
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
13 10 0.17
14 15 0.25
15 14 0.23
16 18 0.30
17 3 0.05
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (15 bp):
CTAAACCCTAAACAT
Found at i:7879614 original size:14 final size:14
Alignment explanation
Indices: 7879554--7879692 Score: 88
Period size: 14 Copynumber: 9.7 Consensus size: 14
7879544 CCAAACCTCC
*
7879554 AAACCCTAAAAT-T
1 AAACCCTAAAATCA
* *
7879567 AAACCCTAAATCCTCT
1 AAACCCTAAA--ATCA
7879583 AAACCCTAAAACATCA
1 AAACCCT-AAA-ATCA
7879599 AAACCCTAAAATCA
1 AAACCCTAAAATCA
*
7879613 AAACCCTAAAACCA
1 AAACCCTAAAATCA
* *
7879627 AAA-CTTCAAACCTC-
1 AAACCCT-AAA-ATCA
*
7879641 AAACTCTAAAATCA
1 AAACCCTAAAATCA
* *
7879655 AAACCC-CAAATCTC
1 AAACCCTAAAATC-A
*
7879669 AAACCCTAAAATTA
1 AAACCCTAAAATCA
*
7879683 AAAACCTAAA
1 AAACCCTAAA
7879693 CCCCAAAATC
Statistics
Matches: 99, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
13 19 0.19
14 49 0.49
15 10 0.10
16 18 0.18
17 3 0.03
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCCTAAAATCA
Found at i:7880037 original size:16 final size:16
Alignment explanation
Indices: 7880016--7880054 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7880006 TCTAATCCTC
*
7880016 ATTAATAATGAGACTA
1 ATTAATAATGAGAATA
7880032 ATTAATAATGAGAATA
1 ATTAATAATGAGAATA
7880048 A-TAATAA
1 ATTAATAA
7880055 AATGGGATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (16 bp):
ATTAATAATGAGAATA
Found at i:7881018 original size:26 final size:26
Alignment explanation
Indices: 7880968--7881018 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
7880958 CAATGATTGG
* *
7880968 ATTTAATTAGTTTTATTTGATATTTA
1 ATTTAATTACTTTTATTTGAAATTTA
* *
7880994 ATTTAATTTCTTTTATTTTAAATTT
1 ATTTAATTACTTTTATTTGAAATTT
7881019 TCATAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (26 bp):
ATTTAATTACTTTTATTTGAAATTTA
Found at i:7882422 original size:20 final size:20
Alignment explanation
Indices: 7882365--7882428 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
7882355 TTTTTATTCA
*
7882365 TTTTTATT-TTAGATT-TTT
1 TTTTTATTATTTGATTATTT
*
7882383 TTATTTCA-TATTT-ATCATTT
1 TT-TTT-ATTATTTGATTATTT
7882403 TTTTTATTATTTGATTATTT
1 TTTTTATTATTTGATTATTT
7882423 TTTTTA
1 TTTTTA
7882429 AAAAAAGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
18 3 0.08
19 14 0.38
20 20 0.54
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.73
Consensus pattern (20 bp):
TTTTTATTATTTGATTATTT
Found at i:7884533 original size:20 final size:19
Alignment explanation
Indices: 7884504--7884564 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 19
7884494 AATCTGGAAA
*
7884504 TTTATTTTTTTGTTTATTTT
1 TTTATGTTTTTGTTT-TTTT
*
7884524 TTTATGTTTTTGTAGGTTTTT
1 TTTATGTTTTTGT--TTTTTT
*
7884545 TTTATGTGTTTGTTTTTTT
1 TTTATGTTTTTGTTTTTTT
7884564 T
1 T
7884565 AGAATATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 6 0.17
20 12 0.34
21 16 0.46
22 1 0.03
ACGTcount: A:0.08, C:0.00, G:0.13, T:0.79
Consensus pattern (19 bp):
TTTATGTTTTTGTTTTTTT
Found at i:7884768 original size:60 final size:58
Alignment explanation
Indices: 7884624--7884955 Score: 368
Period size: 60 Copynumber: 5.7 Consensus size: 58
7884614 TAAGCTCTCT
* * * *
7884624 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCCA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA-ATTTTCA
* *
7884683 AAATAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCA
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
* ** * *
7884741 AAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCT
1 AAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCA
* * *
7884802 AAAAAATATTTTCGA-AAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAATAAATTTTC-
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT--TAAA-AATAAATTTTCA
** * * *
7884861 AAAAAAGGTTTTTGAGAAAAAGTTGAAAGTATTAATTTTCCTTAAAAAATAAA-TTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTTCA
*
7884919 AAAAAATA-TTTTGGGGAAAAGTTGAAAGTATCAATTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTT
7884956 CCTGCACAAA
Statistics
Matches: 233, Mismatches: 29, Indels: 24
0.81 0.10 0.08
Matches are distributed among these distances:
57 30 0.13
58 49 0.21
59 66 0.28
60 69 0.30
61 19 0.08
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
Found at i:7884889 original size:118 final size:116
Alignment explanation
Indices: 7884632--7884955 Score: 422
Period size: 118 Copynumber: 2.8 Consensus size: 116
7884622 CTAAAAAATA
* * *
7884632 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGCTTTCCAAAATAATATTTTT
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATAAAG-TTTCTAAAA-AATA-TTTT
* *
7884696 AGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAGGTT
63 AGGAAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAAATTTTCAAAAAAAGG-T
* *
7884751 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCTAAAAAATATTTTCG
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAAT-AAAGTTTCTAAAAAATATTTTAG
*
7884816 AAAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAATAAATTTTC-AAAAAAGG-
65 GAAAAAGTTGAAAGTATCAATTTTCCT--AAAA-AATAAATTTTCAAAAAAAGGT
* * * *
7884869 TTTTTGAGAAAAAGTTGAAAGTATTAATTTTCCTTAAAAAATAAA-TTTCTAAAAAATATTTTGG
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TAGAAAATAAAGTTTCTAAAAAATATTTTAG
*
7884933 GGAAAAGTTGAAAGTATCAATTT
65 GAAAAAGTTGAAAGTATCAATTT
7884956 CCTGCACAAA
Statistics
Matches: 185, Mismatches: 14, Indels: 14
0.87 0.07 0.07
Matches are distributed among these distances:
117 39 0.21
118 64 0.35
119 49 0.26
120 19 0.10
121 14 0.08
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (116 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATAAAGTTTCTAAAAAATATTTTAGG
AAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAAATTTTCAAAAAAAGGT
Found at i:7888475 original size:18 final size:18
Alignment explanation
Indices: 7888439--7888486 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7888429 GCAATTTTTG
**
7888439 AAAAAAAAAAAACCCAAA
1 AAAAAAAAAAAAAACAAA
*
7888457 AAAAAAAAAAAAAAGAAA
1 AAAAAAAAAAAAAACAAA
7888475 AGAAAAGAAAAA
1 A-AAAA-AAAAA
7888487 TGCCACAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 16 0.64
19 4 0.16
20 5 0.20
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAAAAACAAA
Found at i:7889953 original size:23 final size:22
Alignment explanation
Indices: 7889922--7889981 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 22
7889912 GAATATTTTG
* *
7889922 ATGATAAATTTTTGAGAACTCAA
1 ATGAGAAATCTTTGAG-ACTCAA
**
7889945 ATGAGAAATCTTTGAGTTTCAA
1 ATGAGAAATCTTTGAGACTCAA
7889967 ATGAG-AATCTTTGAG
1 ATGAGAAATCTTTGAG
7889982 GAGTGAACCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.30
22 9 0.27
23 14 0.42
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35
Consensus pattern (22 bp):
ATGAGAAATCTTTGAGACTCAA
Found at i:7889977 original size:21 final size:22
Alignment explanation
Indices: 7889941--7889981 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7889931 TTTTGAGAAC
7889941 TCAAATGAGAAATCTTTGAGTT
1 TCAAATGAGAAATCTTTGAGTT
7889963 TCAAATGAG-AATCTTTGAG
1 TCAAATGAGAAATCTTTGAG
7889982 GAGTGAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (22 bp):
TCAAATGAGAAATCTTTGAGTT
Found at i:7890703 original size:40 final size:42
Alignment explanation
Indices: 7890613--7890705 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
7890603 TAGTCTGTCC
*
7890613 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTA
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGAGCCTCTA
*
7890655 TTTAGAGGAGCAATTTACTTTC-CAAAGTCGT-GAGCCTCTG
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGAGCCTCTA
7890695 TTTAGAGGAGC
1 TTTAGAGGAGC
7890706 TTTAATACTT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 18 0.37
41 9 0.18
42 22 0.45
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGAGCCTCTA
Found at i:7890808 original size:1 final size:1
Alignment explanation
Indices: 7890802--7890848 Score: 76
Period size: 1 Copynumber: 47.0 Consensus size: 1
7890792 GATCAAATTT
* *
7890802 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7890849 GTTGCCTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.96, C:0.02, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:7890885 original size:123 final size:126
Alignment explanation
Indices: 7890724--7890952 Score: 365
Period size: 124 Copynumber: 1.8 Consensus size: 126
7890714 TTCAAAAATC
*
7890724 GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGC
1 GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGC
7890789 TTTGATCAA-ATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAA
66 TTTGATCAAGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAA
*
7890849 GTTGCC-TATTTAGAGGAGCTTTGTTTATGTTT-TCAAAGTCATTGAACCTCTGTTTAGAGGAGC
1 GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGC
**** **
7890912 TTTGATCAAGATTTTTTCATTAAAAAAAAAAAAAAAAAAAA
66 TTTGATCAAGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
7890953 TGGGCAAAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
123 38 0.40
124 51 0.54
125 6 0.06
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.30
Consensus pattern (126 bp):
GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGC
TTTGATCAAGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAA
Found at i:7890963 original size:123 final size:124
Alignment explanation
Indices: 7890724--7890952 Score: 354
Period size: 123 Copynumber: 1.8 Consensus size: 124
7890714 TTCAAAAATC
*
7890724 GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGC
1 GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGC
7890789 TTTGATCAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAA
66 TTTGATCAAATTT-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAA
*
7890849 GTTGCC-TATTTAGAGGAGCTTTGTTTATGTTT-TCAAAGTCATTGAACCTCTGTTTAGAGGAGC
1 GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGC
**** **
7890912 TTTGATCAAGATTTTTTCATTAAAAAAAAAAAAAAAAAAAA
66 TTTGATCAA-ATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
7890953 TGGGCAAAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
123 59 0.62
124 30 0.32
125 6 0.06
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.30
Consensus pattern (124 bp):
GTTGCCTTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGC
TTTGATCAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAA
Found at i:7893048 original size:59 final size:56
Alignment explanation
Indices: 7892962--7893309 Score: 408
Period size: 59 Copynumber: 5.9 Consensus size: 56
7892952 AAAAAAATAT
* * *
7892962 AAAATAAGCTCTCTAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATAAG-TTTCCAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCCTCG
7893020 AAAATAAGCTTTCCAAAATAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAAATAAG-TTTCCAAAA-AATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTCG
* * **
7893079 AAAATTAAAGTTTTCAAAAAATATTTTCGGGAAAAGTTGAAAGTATCAATTTTCCTAAA
1 AAAA-T-AAGTTTCCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT-CG
* ** *
7893138 AAAATAATGAATTTTCAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTCG
1 AAAATAA-G--TTTCCAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTCG
* **
7893198 AAAATAAAAGTTTCCAAAAAATTTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAAAT--AAGTTTCCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC-TCG
* * *
7893257 AAAATAAATTTCTAAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAATAAGTTTCCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
7893310 CCACAAAAAA
Statistics
Matches: 255, Mismatches: 23, Indels: 25
0.84 0.08 0.08
Matches are distributed among these distances:
57 46 0.18
58 71 0.28
59 74 0.29
60 32 0.13
61 30 0.12
62 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (56 bp):
AAAATAAGTTTCCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTCG
Found at i:7893194 original size:119 final size:115
Alignment explanation
Indices: 7892976--7893309 Score: 451
Period size: 119 Copynumber: 2.8 Consensus size: 115
7892966 TAAGCTCTCT
** * *
7892976 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG-CTTTCCAAAATA
1 AAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAAGAATTTTC-AAA-A
* *
7893040 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATTAAAGTTTTC
63 A-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCC
*
7893094 AAAAAATATTTTCGGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAAATAATGAATTTTCAAAAA
1 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT-AAAAAATAA-GAATTTTCAAAAA
* *
7893159 AGGTTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTCGAAAATAAAAGTTTCC
64 A--TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCC
*
7893213 AAAAAATTTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAT-A-AA-TTTCTAAAAA
1 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC-TAAAAAATAAGAATTTTC-AAAAA
7893275 ATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
64 AT-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
7893310 CCACAAAAAA
Statistics
Matches: 195, Mismatches: 13, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
114 1 0.01
115 34 0.17
116 8 0.04
117 27 0.14
118 24 0.12
119 96 0.49
120 5 0.03
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.34
Consensus pattern (115 bp):
AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAAGAATTTTCAAAAAAT
TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCC
Found at i:7893319 original size:59 final size:57
Alignment explanation
Indices: 7892973--7893319 Score: 328
Period size: 58 Copynumber: 5.9 Consensus size: 57
7892963 AAATAAGCTC
* *** *
7892973 TCTAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC-TTGAAAATAAGCTT
1 TCTAAAAAATA-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCACAAAAAATAA-ATT
* * * *
7893031 TCCAAAATAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATTAAAGTT
1 TCTAAAA-AATA-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCACAAAAAATAAA-TT
*
7893091 T-TCAAAAAATATTTTCGGGAAAAGTTGAAAGTATCAATTTTCCTA-AAAAAATAATGAATT
1 TCT-AAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCC-ACAAAAAAT-A--AATT
* * * *
7893151 T-TCAAAAAAGGT-TTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTCGAAAATAA-AAGTT
1 TCT-AAAAAA--TATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCAC-AAAA-AATAAATT
* * * **
7893210 TCCAAAAAATTTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAATT
1 TCTAAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCACAAAAAATAAATT
7893267 TCTAAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCCCACAAAAAA
1 TCTAAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTT--CCACAAAAAA
7893320 CAATCATTCT
Statistics
Matches: 243, Mismatches: 28, Indels: 35
0.79 0.09 0.11
Matches are distributed among these distances:
56 2 0.01
57 47 0.19
58 72 0.30
59 59 0.24
60 24 0.10
61 32 0.13
62 5 0.02
63 2 0.01
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.34
Consensus pattern (57 bp):
TCTAAAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTCCACAAAAAATAAATT
Found at i:7897663 original size:58 final size:57
Alignment explanation
Indices: 7897574--7898073 Score: 635
Period size: 58 Copynumber: 8.7 Consensus size: 57
7897564 NNNNNNNNTA
* *
7897574 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC
* *
7897631 AAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTC
7897690 -AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC
*
7897745 -AAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC
* *
7897799 AAAAAAAATTTTTGAGGAAAAGTTGAAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAATATTTTTGAGGAAAAGTTG-AAAGTATCAATTTTCCTTGAAAAT-AAAATTT-C
* * *
7897859 AAAAAAT-TTTTTG-GGAAAAAGTTGTAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC
* * * **
7897915 AAAAATGGATTTTTTTTAGGAAAAATTGAAAGTATCAATTTTCCTTGAAAATCAAAGGTTC
1 AAAAA---ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTC
*
7897976 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAA-AATCAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA--AATTTC
7898033 AAAAAATCAATTTTTG-GGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAT--ATTTTTGAGG-AAAAGTTGAAAGTATCAATTTT
7898074 TCCTGCACAA
Statistics
Matches: 393, Mismatches: 28, Indels: 41
0.85 0.06 0.09
Matches are distributed among these distances:
53 5 0.01
54 34 0.09
55 33 0.08
56 16 0.04
57 85 0.22
58 109 0.28
59 59 0.15
60 40 0.10
61 12 0.03
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC
Found at i:7898038 original size:14 final size:14
Alignment explanation
Indices: 7898019--7898045 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7898009 AATTTTCCTT
7898019 AAAAAATCAATTTC
1 AAAAAATCAATTTC
7898033 AAAAAATCAATTT
1 AAAAAATCAATTT
7898046 TTGGGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAAAATCAATTTC
Found at i:7908405 original size:8 final size:8
Alignment explanation
Indices: 7908391--7908468 Score: 59
Period size: 9 Copynumber: 9.0 Consensus size: 8
7908381 ATACTATGCT
7908391 TAAAAAATA
1 TAAAAAA-A
*
7908400 AAAAAAAA
1 TAAAAAAA
7908408 TGAAAAAAA
1 T-AAAAAAA
7908417 TGAAAACAAA
1 T-AAAA-AAA
7908427 TATGAAAAAA
1 TA--AAAAAA
*
7908437 TGAAAAAA
1 TAAAAAAA
7908445 TGAAAAAAA
1 T-AAAAAAA
*
7908454 T-GAAAAA
1 TAAAAAAA
7908461 TAAAAAAA
1 TAAAAAAA
7908469 AAGTGAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
7 6 0.11
8 13 0.23
9 27 0.47
10 8 0.14
11 3 0.05
ACGTcount: A:0.78, C:0.01, G:0.08, T:0.13
Consensus pattern (8 bp):
TAAAAAAA
Found at i:7908406 original size:9 final size:9
Alignment explanation
Indices: 7908392--7908481 Score: 58
Period size: 10 Copynumber: 9.7 Consensus size: 9
7908382 TACTATGCTT
7908392 AAAAAATAAA
1 AAAAAAT-AA
*
7908402 AAAAAATGA
1 AAAAAATAA
7908411 AAAAAATGAA
1 AAAAAAT-AA
* *
7908421 AACAAATATG
1 AAAAAATA-A
*
7908431 AAAAAAT-G
1 AAAAAATAA
*
7908439 AAAAAATGA
1 AAAAAATAA
7908448 AAAAAATGAA
1 AAAAAAT-AA
*
7908458 AAATAA-AA
1 AAAAAATAA
*
7908466 AAAAAGTGAA
1 AAAAAAT-AA
7908476 AAAAAA
1 AAAAAA
7908482 GGACTCAAGG
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
8 14 0.22
9 16 0.25
10 33 0.52
ACGTcount: A:0.79, C:0.01, G:0.09, T:0.11
Consensus pattern (9 bp):
AAAAAATAA
Found at i:7908477 original size:8 final size:8
Alignment explanation
Indices: 7908402--7908479 Score: 66
Period size: 9 Copynumber: 8.8 Consensus size: 8
7908392 AAAAAATAAA
7908402 AAAAAATG
1 AAAAAATG
7908410 AAAAAAATG
1 -AAAAAATG
7908419 AAAACAAATATG
1 --AA-AAA-ATG
7908431 AAAAAATG
1 AAAAAATG
7908439 AAAAAATG
1 AAAAAATG
7908447 AAAAAAATG
1 -AAAAAATG
**
7908456 AAAAATAAA
1 AAAAA-ATG
7908465 AAAAAAGTG
1 AAAAAA-TG
7908474 AAAAAA
1 AAAAAA
7908480 AAGGACTCAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
8 17 0.29
9 31 0.53
10 5 0.08
11 3 0.05
12 3 0.05
ACGTcount: A:0.77, C:0.01, G:0.10, T:0.12
Consensus pattern (8 bp):
AAAAAATG
Found at i:7909922 original size:43 final size:44
Alignment explanation
Indices: 7909850--7909935 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 44
7909840 TTATATTATA
*
7909850 ATTTATTTATTATTATTTTTATTTTTATCT-TGTAATATTTTTTGG
1 ATTTATTTATTATTATTTTTA-TATTATCTGT-TAATATTTTTTGG
*
7909895 ATTTATCTTATT-TTATTTTTA-ATTATCTGTTAATTTTTTTT
1 ATTTAT-TTATTATTATTTTTATATTATCTGTTAATATTTTTT
7909936 TAATTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
43 16 0.43
44 1 0.03
45 15 0.41
46 5 0.14
ACGTcount: A:0.22, C:0.03, G:0.05, T:0.70
Consensus pattern (44 bp):
ATTTATTTATTATTATTTTTATATTATCTGTTAATATTTTTTGG
Found at i:7910878 original size:5 final size:5
Alignment explanation
Indices: 7910861--7910941 Score: 62
Period size: 5 Copynumber: 15.8 Consensus size: 5
7910851 TTAATATTCT
* *
7910861 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTT- CTTTA TTTTA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTTA
7910909 -TTT- TTTTA TTTTCA TTTTTA TTTT- TTTTA TTTT
1 TTTTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTT
7910942 TTTGTTTTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
4 13 0.21
5 25 0.40
6 21 0.33
7 4 0.06
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:7910901 original size:40 final size:40
Alignment explanation
Indices: 7910857--7910932 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
7910847 TTATTTAATA
* * *
7910857 TTCTTT-TTATCTTTATTTTATTTTTATTTTTGTTTTACTT
1 TTCTTTATTATATTT-TTTTATTTTCATTTTTATTTTACTT
*
7910897 TTCTTTATTTTATTTTTTTATTTTCATTTTTATTTT
1 TTCTTTATTATATTTTTTTATTTTCATTTTTATTTT
7910933 TTTTATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 25 0.81
41 6 0.19
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (40 bp):
TTCTTTATTATATTTTTTTATTTTCATTTTTATTTTACTT
Found at i:7910920 original size:34 final size:33
Alignment explanation
Indices: 7910866--7910952 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 33
7910856 ATTCTTTTTA
7910866 TCTTTATTTTA--TTTTTATTTT-TGTTTTACTTT
1 TCTTTATTTTATTTTTTTATTTTAT-TTTTA-TTT
7910898 TCTTTATTTTATTTTTTTATTTTCATTTTTATTT
1 TCTTTATTTTATTTTTTTATTTT-ATTTTTATTT
*
7910932 TTTTTATTTT-TTTGTTTTATT
1 TCTTTATTTTATTT-TTTTATT
7910953 ATTCAATTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
32 11 0.22
33 3 0.06
34 29 0.59
35 5 0.10
36 1 0.02
ACGTcount: A:0.13, C:0.05, G:0.02, T:0.80
Consensus pattern (33 bp):
TCTTTATTTTATTTTTTTATTTTATTTTTATTT
Found at i:7910942 original size:6 final size:6
Alignment explanation
Indices: 7910860--7910933 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
7910850 TTTAATATTC
* * * *
7910860 TTTTTA TCTTTA -TTTTA TTTTTA TTTTTG TTTTACTT TTCTTTA TTTTATT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT--TA TT-TTTA TTTT-TA
*
7910911 TTTTTA TTTTCA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTT
7910934 TTTATTTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.07
6 37 0.69
7 8 0.15
8 3 0.06
9 2 0.04
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:7910962 original size:29 final size:27
Alignment explanation
Indices: 7910861--7910967 Score: 85
Period size: 28 Copynumber: 3.7 Consensus size: 27
7910851 TTAATATTCT
7910861 TTTTATCTTT-ATTTTATTT-TTATTTTTG
1 TTTTAT-TTTCATTTT-TTTATT-TTTTTG
*
7910889 TTTTACTTTTC-TTTATTTTATTTTTTTA
1 TTTTA-TTTTCATTT-TTTTATTTTTTTG
*
7910917 TTTTCATTTTTATTTTTTTTATTTTTTTG
1 TTTT-ATTTTCA-TTTTTTTATTTTTTTG
7910946 TTTTATTATTCAATTTTCTTTA
1 TTTTATT-TTC-ATTTT-TTTA
7910968 AATAAAAATA
Statistics
Matches: 65, Mismatches: 4, Indels: 18
0.75 0.05 0.21
Matches are distributed among these distances:
28 30 0.46
29 27 0.42
30 8 0.12
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.78
Consensus pattern (27 bp):
TTTTATTTTCATTTTTTTATTTTTTTG
Found at i:7911042 original size:58 final size:58
Alignment explanation
Indices: 7910980--7911606 Score: 854
Period size: 58 Copynumber: 10.7 Consensus size: 58
7910970 TAAAAATAAA
* * *
7910980 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTATCCTTGAAAATCAAAGTTTCC
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
*
7911038 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
* * * *
7911096 AAAAATATTTTTCAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT-AAAATTTCAA
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTC-C
* *
7911154 AAAAGATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
1 AAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
* * *
7911213 AAAAATATTTTTCAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAA
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTC-C
* *
7911271 AAAAGATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
* * * *
7911330 AATAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCA
1 AAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
* *
7911387 AAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATCAAAGTTTCC
1 AAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTTAAAAATCAAAGTTTCC
* * *
7911448 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCC
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
*
7911506 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAT-AAA-TTTCA
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATCAAAGTTTCC
*
7911563 AAAAATCAATTTTTTG-GAAAAAGTTGAAAGTATCAAATTTTCCT
1 AAAAAT--A-TTTTTGAGGAAAAGTTGAAAGTATC-AATTTTCCT
7911607 GCAGAAGAAC
Statistics
Matches: 507, Mismatches: 45, Indels: 32
0.87 0.08 0.05
Matches are distributed among these distances:
57 35 0.07
58 254 0.50
59 164 0.32
60 42 0.08
61 12 0.02
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (58 bp):
AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
Found at i:7911203 original size:117 final size:116
Alignment explanation
Indices: 7910980--7911606 Score: 890
Period size: 117 Copynumber: 5.3 Consensus size: 116
7910970 TAAAAATAAA
* * * *
7910980 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTATCCTTGAAAATCAAAGTTTC-CAAAA-A
1 AAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAAAAAAGA
*
7911043 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
64 TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
* *
7911096 AAAAATATTTTTCAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGAT
1 AAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGAT
7911161 TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
65 TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
*
7911213 AAAAATATTTTTCAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGAT
1 AAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGAT
* *
7911278 TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
65 TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
* * *
7911330 AATAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAGGT
1 AAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGAT
* *
7911395 TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATCAAAGTTTCC
65 TTTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTTAAAAATCAAAGTTTTC
* * * *
7911448 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTC-CAAAA-A
1 AAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAAAAAAGA
*
7911511 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAT-AAA--TTTC
64 TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATCAAAGTTTTC
*
7911562 AAAAAATCAATTTTTTGGAAAAAGTTGAAAGTATCAAATTTTCCT
1 -AAAAAT--A-TTTTTGGGAAAAGTTGAAAGTATC-AATTTTCCT
7911607 GCAGAAGAAC
Statistics
Matches: 474, Mismatches: 25, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
114 3 0.01
115 13 0.03
116 60 0.13
117 305 0.64
118 83 0.18
119 10 0.02
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (116 bp):
AAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAGATT
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC
Found at i:7911422 original size:176 final size:173
Alignment explanation
Indices: 7910980--7911606 Score: 838
Period size: 176 Copynumber: 3.6 Consensus size: 173
7910970 TAAAAATAAA
* * * * *
7910980 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTATCCTTGAAAATCAAAGTTTCCAAAAATA
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAAATA
* *
7911045 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTCAAAAATATTTTTCA
66 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAA-ATTTCAAAAATATTTTTGA
* * * *
7911110 GGAAAAGTTGAAAATATCAATTTTCCTTAAAAAT-AAAATTTCAA
130 GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC-C
* *
7911154 AAAAGATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTTC-AAAAA
1 AAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAA-ATTTCAAAAAA
* *
7911218 TATTTTTCAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAAAAAAGATTTTT
64 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC--AAAA-ATATTT
7911282 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
126 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
* *
7911330 AATAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCAAAAAAG
1 AAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAAA-
* * *
7911393 GTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATCAAAGTTTCCAAAAATATTT
64 -TATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTTAAAAATCAAAATTT-CAAAAATATTT
* *
7911458 TTGGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCC
126 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
7911506 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA--ATAAATTTCAAAAAAT
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCA-AAATTTCAAAAAAT
*
7911569 CAATTTTTTG-GAAAAAGTTGAAAGTATCAAATTTTCCT
65 --A-TTTTTGAGGAAAAGTTGAAAGTATC-AATTTTCCT
7911607 GCAGAAGAAC
Statistics
Matches: 406, Mismatches: 28, Indels: 36
0.86 0.06 0.08
Matches are distributed among these distances:
173 8 0.02
174 18 0.04
175 135 0.33
176 204 0.50
177 34 0.08
178 6 0.01
179 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (173 bp):
AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAAATA
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCAAAAATATTTTTGAG
GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
Found at i:7911645 original size:6 final size:6
Alignment explanation
Indices: 7911634--7911661 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7911624 AATTCCTTCC
7911634 TTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTT
7911662 TTTTTAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:7918500 original size:59 final size:59
Alignment explanation
Indices: 7918433--7918710 Score: 318
Period size: 58 Copynumber: 4.7 Consensus size: 59
7918423 TTTGTACATG
* *
7918433 GAAAAATTGATACTTTCAACTTTTTTCCAAAAATATTTTTTTTG-AAACTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTTGAAAAC-TTAATTTCAA
* ** * * *
7918492 GAAAAATTGATGCTTTCAAC-TTTTCCTCAAAAAT-TCATCTTTGAAAACTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTTTGAAAACTTAATTTCAA
* * * *
7918550 GGAAAATTGATACTTTCAAC-TTTTCCCAAAAAATATTTTTTTGGAAAGCTTATTTTCAA
1 GAAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTTGAAAACTTAATTTCAA
* **
7918609 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAACTTTAATTTTGA
1 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTTGAAAAC-TTAATTTCAA
*
7918667 GGAAAATTGATACTTTCAAC-TTTTCTCCAAAAATATTTTTTTTG
1 GAAAAATTGATACTTTCAACTTTTTC-CCAAAAATATTTTTTTTG
7918711 GATTTTATTT
Statistics
Matches: 185, Mismatches: 25, Indels: 17
0.81 0.11 0.07
Matches are distributed among these distances:
57 15 0.08
58 83 0.45
59 74 0.40
60 13 0.07
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.43
Consensus pattern (59 bp):
GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTTGAAAACTTAATTTCAA
Found at i:7918582 original size:117 final size:116
Alignment explanation
Indices: 7918435--7918710 Score: 396
Period size: 117 Copynumber: 2.4 Consensus size: 116
7918425 TGTACATGGA
* *
7918435 AAAATTGATACTTTCAACTTTTTTCCAAAAATATTTTTTTTGAAA-CTTTAATTTCGAGAAAAAT
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTTTGAAAGC-TTAATTTCAAGAAAAAT
* * *
7918499 TGATGCTTTCAACTTTTCCTCAAAAAT-TCATCTTTGAAAAC-TTATTTTTAAGG
64 TGATACTTTCAACTTTTCCCCAAAAATAT--TCTTTGAAAACTTTAATTTTAAGG
* *
7918552 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGGAAAGCTTATTTTCAAGAAAAATT
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTTGAAAGCTTAATTTCAAGAAAAATT
* *
7918617 GATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTAATTTTGAGG
65 GATACTTTCAACTTTTCCCCAAAAATATTCTTTGAAAACTTTAATTTTAAGG
7918669 AAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTTG
1 AAAATTGATACTTTCAACTTTTC-CCAAAAATATTTTTTTTG
7918711 GATTTTATTT
Statistics
Matches: 144, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
116 16 0.11
117 124 0.86
118 4 0.03
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.43
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAGCTTAATTTCAAGAAAAATTG
ATACTTTCAACTTTTCCCCAAAAATATTCTTTGAAAACTTTAATTTTAAGG
Found at i:7918769 original size:45 final size:45
Alignment explanation
Indices: 7918720--7918807 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
7918710 GGATTTTATT
* *
7918720 TAAAGAAAA-TAAAATAATAAA-ACAAAATGAAAGTGAAAATAAAAA
1 TAAAGAAAAGTAAAATAA-AAATAAAAAAT-AAAATGAAAATAAAAA
*
7918765 TAAAGAAAAGTAAAATAAAAATAAAAAATAAAATGAAGATAAA
1 TAAAGAAAAGTAAAATAAAAATAAAAAATAAAATGAAAATAAA
7918808 TAAACAAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 24 0.63
46 14 0.37
ACGTcount: A:0.74, C:0.01, G:0.09, T:0.16
Consensus pattern (45 bp):
TAAAGAAAAGTAAAATAAAAATAAAAAATAAAATGAAAATAAAAA
Found at i:7918779 original size:21 final size:22
Alignment explanation
Indices: 7918749--7918789 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7918739 AAACAAAATG
7918749 AAAGTGAAAATAAAAATAAAGA
1 AAAGTGAAAATAAAAATAAAGA
7918771 AAAGT-AAAATAAAAATAAA
1 AAAGTGAAAATAAAAATAAA
7918790 AAATAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (22 bp):
AAAGTGAAAATAAAAATAAAGA
Found at i:7918807 original size:18 final size:18
Alignment explanation
Indices: 7918725--7918798 Score: 62
Period size: 18 Copynumber: 3.9 Consensus size: 18
7918715 TTATTTAAAG
*
7918725 AAAATAAAATAATAAAA-C
1 AAAATAAAA-AATAAAATA
* *
7918743 AAAAT-GAAAGTGAAAATA
1 AAAATAAAAAAT-AAAATA
7918761 AAAATAAAGAAAAGTAAAATA
1 AAAAT-AA-AAAA-TAAAATA
7918782 AAAATAAAAAATAAAAT
1 AAAATAAAAAATAAAAT
7918799 GAAGATAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
16 2 0.04
17 6 0.13
18 16 0.36
19 4 0.09
20 2 0.04
21 14 0.31
22 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (18 bp):
AAAATAAAAAATAAAATA
Found at i:7918867 original size:17 final size:16
Alignment explanation
Indices: 7918827--7918877 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
7918817 CTAATCTAAT
*
7918827 AATAATAATAATAAATA
1 AATAA-AATAATAAAAA
7918844 AAT-AAATATATAAAAA
1 AATAAAATA-ATAAAAA
7918860 AATAAAATGAA-AAAAA
1 AATAAAAT-AATAAAAA
7918876 AA
1 AA
7918878 CGTGAAACGG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.13
16 17 0.57
17 8 0.27
18 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (16 bp):
AATAAAATAATAAAAA
Found at i:7919760 original size:20 final size:21
Alignment explanation
Indices: 7919721--7919778 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
7919711 ATTAAATGAA
**
7919721 AATAATCAGATAAACCAAAAA-
1 AATAA-CAGATAAATTAAAAAT
*
7919742 ATTAACAGATAAATTAAAAAT
1 AATAACAGATAAATTAAAAAT
*
7919763 AATAATAGATAAATTA
1 AATAACAGATAAATTA
7919779 TAACATATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.24
Consensus pattern (21 bp):
AATAACAGATAAATTAAAAAT
Found at i:7919794 original size:22 final size:22
Alignment explanation
Indices: 7919748--7919803 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
7919738 AAAAATTAAC
7919748 AGATAAATTA-AAAATAATAAT
1 AGATAAATTATAAAATAATAAT
*
7919769 AGATAAATTATAACAT-ATAAAT
1 AGATAAATTATAAAATAAT-AAT
*
7919791 AGATAAATAATAA
1 AGATAAATTATAA
7919804 TAAATATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (22 bp):
AGATAAATTATAAAATAATAAT
Found at i:7919812 original size:26 final size:26
Alignment explanation
Indices: 7919783--7919843 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
7919773 AAATTATAAC
*
7919783 ATATAAATAGATAAATAATAATAA-AT
1 ATATAAATAGATAAATAA-AAAAATAT
* *
7919809 ATATAACTAGGTAAATAAAAAAATAT
1 ATATAAATAGATAAATAAAAAAATAT
7919835 ATATAAATA
1 ATATAAATA
7919844 TTAATAGAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.13
26 26 0.87
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (26 bp):
ATATAAATAGATAAATAAAAAAATAT
Found at i:7919916 original size:21 final size:20
Alignment explanation
Indices: 7919881--7919942 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 20
7919871 AGAAAAAATG
7919881 AAAA-AAATAA-T-AATAAT
1 AAAATAAATAAGTAAATAAT
* *
7919898 AAAGATATATATA-TAAATAGT
1 AAA-ATAAATA-AGTAAATAAT
7919919 AATAATAAATAAGTAAATAAT
1 AA-AATAAATAAGTAAATAAT
7919940 AAA
1 AAA
7919943 TACATAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
17 3 0.09
18 1 0.03
19 4 0.11
20 4 0.11
21 22 0.63
22 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (20 bp):
AAAATAAATAAGTAAATAAT
Found at i:7919939 original size:15 final size:14
Alignment explanation
Indices: 7919885--7919944 Score: 56
Period size: 15 Copynumber: 4.4 Consensus size: 14
7919875 AAAATGAAAA
7919885 AAATAA-TAATAAT
1 AAATAAGTAATAAT
*
7919898 AAA-GA-TATATATAT
1 AAATAAGTA-ATA-AT
7919912 AAAT-AGTAATAAT
1 AAATAAGTAATAAT
7919925 AAATAAGTAAATAAT
1 AAATAAGT-AATAAT
7919940 AAATA
1 AAATA
7919945 CATAAAAGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.08
13 12 0.30
14 12 0.30
15 13 0.32
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (14 bp):
AAATAAGTAATAAT
Found at i:7919949 original size:8 final size:7
Alignment explanation
Indices: 7919885--7919950 Score: 57
Period size: 8 Copynumber: 9.4 Consensus size: 7
7919875 AAAATGAAAA
7919885 AAATAAT
1 AAATAAT
7919892 -AATAAT
1 AAATAAT
*
7919898 AAA-GAT
1 AAATAAT
*
7919904 ATATATAT
1 AAATA-AT
*
7919912 AAATAGT
1 AAATAAT
7919919 -AATAAT
1 AAATAAT
7919925 AAATAAGT
1 AAATAA-T
7919933 AAATAAT
1 AAATAAT
7919940 AAATACAT
1 AAATA-AT
7919948 AAA
1 AAA
7919951 AGATAAAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
6 15 0.32
7 14 0.30
8 18 0.38
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (7 bp):
AAATAAT
Found at i:7919988 original size:38 final size:35
Alignment explanation
Indices: 7919946--7920023 Score: 88
Period size: 38 Copynumber: 2.1 Consensus size: 35
7919936 TAATAAATAC
7919946 ATAAAAGATAAAGA-A-AAAAATATATAAACTAAAAAAA
1 ATAAAAGATAAA-ATACAAAAATA-AT-AA-TAAAAAAA
*
7919983 TATAAAATATAAAATACAAAAATAATAATAAAAAAA
1 -ATAAAAGATAAAATACAAAAATAATAATAAAAAAA
7920019 ATAAA
1 ATAAA
7920024 GTGGACCAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
35 5 0.14
36 8 0.22
37 3 0.08
38 14 0.38
39 7 0.19
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (35 bp):
ATAAAAGATAAAATACAAAAATAATAATAAAAAAA
Found at i:7919995 original size:17 final size:17
Alignment explanation
Indices: 7919959--7920018 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
7919949 AAAGATAAAG
*
7919959 AAAAAAATATATAAACT
1 AAAAAAATATATAAAAT
7919976 AAAAAAATATA-AAATAT
1 AAAAAAATATATAAA-AT
*
7919993 AAAATACAA-AAATAATAAT
1 AAAA-A-AATATATAA-AAT
7920012 AAAAAAA
1 AAAAAAA
7920019 ATAAAGTGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
16 3 0.08
17 18 0.50
18 4 0.11
19 10 0.28
20 1 0.03
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAAAAATATATAAAAT
Found at i:7920350 original size:42 final size:42
Alignment explanation
Indices: 7920203--7920597 Score: 354
Period size: 42 Copynumber: 9.1 Consensus size: 42
7920193 ATTTGATCAA
* * * *
7920203 GGCTCATCTAAGCAGAGGCTCAATGACTTTGAAAAACATAAACAAT
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAA-AT--A-AAT
* *
7920249 -GTTCCTCTAATCAGAGGCTCAACGACTTTGAAAATGAATAAA-
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAA--AATAAAT
* *
7920291 GGCTCCTCTAATCAGAGGCTTAATGACTTTGGAAAAATAAAT
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAAT
* * * *
7920333 GGCTCATCTAATGAGAGGCTCAACAACTTTGAAAAGATATAAACAAT
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAA-A-AT--A-AAT
* *
7920380 -GCTCCTCTAATCAAAGGCTCAACAACTTTGG-AAAATAAAT
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAAT
*
7920420 AAAGGCTCCTCTAATCAGAGGCTTAACGACTTTGGAAAAATAAAT
1 ---GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAAT
* * * * * *
7920465 GGCTCATTTAATTAGAGGCTCAACAACTTTGGAAAGATAAACAA
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAAT-AA-AT
* * *
7920509 AGCTCCTCTAATCAGAGGCTCGACGACTTTGAAAATGAATAAA-
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAA--AATAAAT
*
7920552 -GCTCCTTTAATCAGAGGCTCAACGACTTT-GAAAAATAAAT
1 GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAAT
7920592 GGCTCC
1 GGCTCC
7920598 CTGACAATCA
Statistics
Matches: 290, Mismatches: 39, Indels: 45
0.78 0.10 0.12
Matches are distributed among these distances:
39 6 0.02
40 3 0.01
41 15 0.05
42 88 0.30
43 37 0.13
44 62 0.21
45 43 0.15
46 32 0.11
47 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (42 bp):
GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAAT
Found at i:7920451 original size:132 final size:130
Alignment explanation
Indices: 7920203--7920596 Score: 591
Period size: 132 Copynumber: 3.0 Consensus size: 130
7920193 ATTTGATCAA
** *
7920203 GGCTCATCTAA-GCAGAGGCTCAATGACTTTGAAAA-ACATAAACAATGTTCCTCTAATCAGAGG
1 GGCTCATCTAATG-AGAGGCTCAACAACTTTGAAAAGA-ATAAACAATGCTCCTCTAATCAGAGG
*
7920266 CTCAACGACTTTGAAAATGAATAAAGGCTCCTCTAATCAGAGGCTTAATGACTTTGGAAAAATAA
64 CTCAACGACTTTGAAAATGAATAAAGGCTCCTCTAATCAGAGGCTTAACGACTTTGGAAAAATAA
7920331 AT
129 AT
*
7920333 GGCTCATCTAATGAGAGGCTCAACAACTTTGAAAAGATATAAACAATGCTCCTCTAATCAAAGGC
1 GGCTCATCTAATGAGAGGCTCAACAACTTTGAAAAGA-ATAAACAATGCTCCTCTAATCAGAGGC
* *
7920398 TCAACAACTTTGGAAAATAAATAAAGGCTCCTCTAATCAGAGGCTTAACGACTTTGGAAAAATAA
65 TCAACGACTTT-GAAAATGAATAAAGGCTCCTCTAATCAGAGGCTTAACGACTTTGGAAAAATAA
7920463 AT
129 AT
* * * *
7920465 GGCTCATTTAATTAGAGGCTCAACAACTTTGGAAAG-ATAAACAAAGCTCCTCTAATCAGAGGCT
1 GGCTCATCTAATGAGAGGCTCAACAACTTTGAAAAGAATAAACAATGCTCCTCTAATCAGAGGCT
* * *
7920529 CGACGACTTTGAAAATGAATAAA-GCTCCTTTAATCAGAGGCTCAACGACTTT-GAAAAATAAAT
66 CAACGACTTTGAAAATGAATAAAGGCTCCTCTAATCAGAGGCTTAACGACTTTGGAAAAATAAAT
7920592 GGCTC
1 GGCTC
7920597 CCTGACAATC
Statistics
Matches: 243, Mismatches: 18, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
127 16 0.07
128 27 0.11
129 12 0.05
130 65 0.27
131 37 0.15
132 86 0.35
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (130 bp):
GGCTCATCTAATGAGAGGCTCAACAACTTTGAAAAGAATAAACAATGCTCCTCTAATCAGAGGCT
CAACGACTTTGAAAATGAATAAAGGCTCCTCTAATCAGAGGCTTAACGACTTTGGAAAAATAAAT
Found at i:7920514 original size:86 final size:85
Alignment explanation
Indices: 7920204--7920590 Score: 406
Period size: 86 Copynumber: 4.5 Consensus size: 85
7920194 TTTGATCAAG
* * * * * *
7920204 GCTCATCTAAGCAGAGGCTCAATGACTTTGAAAAACATAAACAATGTTCCTCTAATCAGAGGCTC
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAA-ATAAACAAAGCTCCTCTAATCAGAGGCTC
7920269 AACGACTTTGAAAATGAATAAA
65 AACGACTTTGAAAA-GAATAAA
* * ** * *
7920291 GGCTCCTCTAATCAGAGGCTTAATGACTTTGGAAAAAT-AA-ATGGCTCATCTAATGAGAGGCTC
1 -GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAACAAAGCTCCTCTAATCAGAGGCTC
*
7920354 AACAACTTTGAAAAGATATAAACAA
65 AACGACTTTGAAAAGA-AT--A-AA
* * *
7920379 TGCTCCTCTAATCAAAGGCTCAACAACTTTGG-AAAATAAATAAAGGCTCCTCTAATCAGAGGCT
1 -GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAACAAA-GCTCCTCTAATCAGAGGCT
* *
7920443 TAACGACTTTGGAAA-AATAAA
64 CAACGACTTTGAAAAGAATAAA
* * * * *
7920464 TGGCTCATTTAATTAGAGGCTCAACAACTTTGGAAAGATAAACAAAGCTCCTCTAATCAGAGGCT
1 --GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAACAAAGCTCCTCTAATCAGAGGCT
*
7920529 CGACGACTTTGAAAATGAATAAA
64 CAACGACTTTGAAAA-GAATAAA
*
7920552 GCTCCTTTAATCAGAGGCTCAACGACTTT-GAAAAATAAA
1 GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAA
7920591 TGGCTCCCTG
Statistics
Matches: 252, Mismatches: 36, Indels: 25
0.81 0.12 0.08
Matches are distributed among these distances:
84 2 0.01
85 44 0.17
86 87 0.35
87 18 0.07
88 70 0.28
89 2 0.01
90 29 0.12
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (85 bp):
GCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAAATAAACAAAGCTCCTCTAATCAGAGGCTCA
ACGACTTTGAAAAGAATAAA
Found at i:7921603 original size:23 final size:22
Alignment explanation
Indices: 7921577--7921638 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
7921567 TTTTCATTCA
7921577 TTTTTTTTCTTTTTTTTTAATT
1 TTTTTTTTCTTTTTTTTTAATT
* ** *
7921599 GTTTTCTTT-TTTAATTTTCATT
1 -TTTTTTTTCTTTTTTTTTAATT
* *
7921621 TCTTTTCTCTTTTTTTTT
1 TTTTTTTTCTTTTTTTTT
7921639 TTATTTCAAG
Statistics
Matches: 29, Mismatches: 9, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
21 5 0.17
22 17 0.59
23 7 0.24
ACGTcount: A:0.08, C:0.10, G:0.02, T:0.81
Consensus pattern (22 bp):
TTTTTTTTCTTTTTTTTTAATT
Found at i:7921622 original size:18 final size:17
Alignment explanation
Indices: 7921581--7921626 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
7921571 CATTCATTTT
7921581 TTTTCTTT-TTTTTTAA
1 TTTTCTTTCTTTTTTAA
*
7921597 TTGT-TTTCTTTTTTAA
1 TTTTCTTTCTTTTTTAA
7921613 TTTTCATTTCTTTT
1 TTTTC-TTTCTTTT
7921627 CTCTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 3 0.12
16 14 0.56
18 8 0.32
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTCTTTCTTTTTTAA
Found at i:7921639 original size:23 final size:23
Alignment explanation
Indices: 7921562--7921645 Score: 70
Period size: 23 Copynumber: 3.8 Consensus size: 23
7921552 GCCTTGAGTC
**
7921562 CTCTTTTTTCATTCATTT-TTTT
1 CTCTTTTTTTTTTCATTTCTTTT
* *
7921584 -TC-TTTTTTTTT-AATTGTTTT
1 CTCTTTTTTTTTTCATTTCTTTT
*
7921604 CT-TTTTTAATTTTCATTTCTTTT
1 CTCTTTTT-TTTTTCATTTCTTTT
*
7921627 CTCTTTTTTTTTTTATTTC
1 CTCTTTTTTTTTTCATTTC
7921646 AAGCATAGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
19 3 0.06
20 11 0.23
21 7 0.15
22 4 0.08
23 18 0.38
24 5 0.10
ACGTcount: A:0.10, C:0.13, G:0.01, T:0.76
Consensus pattern (23 bp):
CTCTTTTTTTTTTCATTTCTTTT
Found at i:7932103 original size:58 final size:56
Alignment explanation
Indices: 7932038--7932366 Score: 297
Period size: 58 Copynumber: 5.7 Consensus size: 56
7932028 ACAGGGGAAT
*
7932038 AATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTTGAAACTTAATTTCGGGAAAA
1 AATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTTGAAACTTAATTTC--AAAAA
** ** * * *
7932096 AATTGATACTTTCAACTTTTCTTCAAAA-ATTCATCTTGAAAACTT-ATTTTAAGAA
1 AATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTTG-AAACTTAATTTCAAAAA
* * * *
7932151 AATTGATACTTTCAACTTTTTCCCAAAA-ATATTTTTTGAAAACTTTAATTTTGAGAAA
1 AATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTTG-AAAC-TTAA-TTTCAAAAA
* *** * * *
7932209 AATTGATACTTTCAACTTTTCCTCAAAACCCCTTTTTTTGAAAATTTATTCTTAAGAAA
1 AATTGATACTTTCAACTTTTCCCCAAAA-TATTTTTTTTGAAACTTAATT-TCAA-AAA
* * **
7932268 AATTGATACTTTCAACTTTT-CCCTAAATATATTTTTTGGAAAGCTTGTTTTCAAAGAA
1 AATTGATACTTTCAACTTTTCCCCAAAATAT-TTTTTTTGAAA-CTTAATTTCAAA-AA
7932326 AATTGATACTTTCAACTTTTCCCCAAATATATTTTGTTTTG
1 AATTGATACTTTCAACTTTTCCCCAAA-ATATTTT-TTTTG
7932367 GATTTTATTT
Statistics
Matches: 218, Mismatches: 39, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
55 39 0.18
56 2 0.01
57 15 0.07
58 109 0.50
59 38 0.17
60 15 0.07
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.43
Consensus pattern (56 bp):
AATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTTGAAACTTAATTTCAAAAA
Found at i:7932123 original size:28 final size:26
Alignment explanation
Indices: 7932092--7932171 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
7932082 TAATTTCGGG
7932092 AAAAAATTGATACTTTCAACTTTTCTT
1 AAAAAATTGATACTTTCAACTTTT-TT
* * **
7932119 CAAAAATTCAT-CTTGAAAACTTATTTT
1 AAAAAATTGATACTT-TCAACTT-TTTT
7932146 AAGAAAATTGATACTTTCAACTTTTT
1 AA-AAAATTGATACTTTCAACTTTTT
7932172 CCCAAAAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
26 3 0.07
27 20 0.49
28 15 0.37
29 3 0.07
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.42
Consensus pattern (26 bp):
AAAAAATTGATACTTTCAACTTTTTT
Found at i:7932375 original size:117 final size:108
Alignment explanation
Indices: 7932038--7932352 Score: 344
Period size: 117 Copynumber: 2.7 Consensus size: 108
7932028 ACAGGGGAAT
* *
7932038 AATTGATACTTTCAACTTTTCCCCAAAATATTTTTTTTGAAACTTAATTTCGGGAAAAAATTGAT
1 AATTGATACTTTCAACTTTT-CCCAAAATA--TTTTTTGAAACTTATTTTC--AAAAAAATTGAT
* * * *
7932103 ACTTTCAACTTTTCTTCAAAAATTCATCTTGAAAACTTATTTTAAG-AA
61 ACTTTCAACTTTTCCTCAAAAATT-TTTTTGAAAATTTATTTTAAGAAA
* *
7932151 AATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAACTTTAATTTTGAGAAAAATTGAT
1 AATTGATACTTTCAAC-TTTTCCC-AAAATATTTTTTG-AAAC-TT-ATTTTCAAAAAAATTGAT
*
7932216 ACTTTCAACTTTTCCTCAAAACCCCTTTTTTTGAAAATTTATTCTTAAGAAA
61 ACTTTCAACTTTTCCTCAAAA---ATTTTTTTGAAAATTTATT-TTAAGAAA
*
7932268 AATTGATACTTTCAACTTTTCCCTAAATATATTTTTTGGAAAGCTTGTTTTCAAAGAAAATTGAT
1 AATTGATACTTTCAACTTTTCCC-AAA-ATATTTTTT-GAAA-CTTATTTTCAAA-AAAATTGAT
*
7932333 ACTTTCAACTTTTCCCCAAA
61 ACTTTCAACTTTTCCTCAAA
7932353 TATATTTTGT
Statistics
Matches: 174, Mismatches: 14, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
112 7 0.04
113 53 0.30
114 12 0.07
115 17 0.10
116 23 0.13
117 60 0.34
118 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.07, T:0.42
Consensus pattern (108 bp):
AATTGATACTTTCAACTTTTCCCAAAATATTTTTTGAAACTTATTTTCAAAAAAATTGATACTTT
CAACTTTTCCTCAAAAATTTTTTTGAAAATTTATTTTAAGAAA
Found at i:7932435 original size:21 final size:22
Alignment explanation
Indices: 7932405--7932445 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7932395 AAACAAAATG
7932405 AAAGTGAAAATAAAAATAAAGA
1 AAAGTGAAAATAAAAATAAAGA
7932427 AAAGT-AAAATAAAAATAAA
1 AAAGTGAAAATAAAAATAAA
7932446 AAATAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (22 bp):
AAAGTGAAAATAAAAATAAAGA
Done.