Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 46 of 121
Found at i:8035266 original size:37 final size:37
Alignment explanation
Indices: 8035200--8035285 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 37
8035190 ATAAATAATT
* * *
8035200 GAAAAATAAACAATTTAAAATTTAATAAAA-ATCCAA
1 GAAAAATAAAAAATTAAAAATTTAATAAAATATACAA
* * *
8035236 TAAAAATAAAAAATCTAAAAATTTCATAAAATATATAA
1 GAAAAATAAAAAAT-TAAAAATTTAATAAAATATACAA
8035274 GAAAAATAAAAA
1 GAAAAATAAAAA
8035286 TTGTAACATT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
36 12 0.29
37 14 0.34
38 15 0.37
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (37 bp):
GAAAAATAAAAAATTAAAAATTTAATAAAATATACAA
Found at i:8035286 original size:37 final size:35
Alignment explanation
Indices: 8035200--8035287 Score: 95
Period size: 37 Copynumber: 2.4 Consensus size: 35
8035190 ATAAATAATT
* *
8035200 GAAAAATAAACAATTTAAAATTTAATAAAAATCCAA
1 GAAAAATAAA-AATTAAAAATTTAATAAAAATACAA
* * *
8035236 TAAAAATAAAAAATCTAAAAATTTCATAAAATATATAA
1 GAAAAAT-AAAAAT-TAAAAATTTAATAAAA-ATACAA
8035274 GAAAAATAAAAATT
1 GAAAAATAAAAATT
8035288 GTAACATTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
36 10 0.23
37 23 0.53
38 10 0.23
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.26
Consensus pattern (35 bp):
GAAAAATAAAAATTAAAAATTTAATAAAAATACAA
Found at i:8035413 original size:48 final size:49
Alignment explanation
Indices: 8035330--8035426 Score: 112
Period size: 49 Copynumber: 2.0 Consensus size: 49
8035320 TTTAAAAACT
*
8035330 TTTTACAATTGTTTAAAAATTTTTAGATTTTAAAAAAATAGATTTTTATTA
1 TTTTACAATTGTTTAAAAATTTTTAGATTTAAAAAAAATAG--TTTTATTA
* *
8035381 TTTT-CAATT-TTTAAAACTTTTCTA-A-TTAAAAAAATTAGTTTTATTA
1 TTTTACAATTGTTTAAAAATTTT-TAGATTTAAAAAAAATAGTTTTATTA
8035427 AATTTTTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
46 8 0.19
48 11 0.26
49 12 0.29
50 7 0.17
51 4 0.10
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (49 bp):
TTTTACAATTGTTTAAAAATTTTTAGATTTAAAAAAAATAGTTTTATTA
Found at i:8035465 original size:20 final size:18
Alignment explanation
Indices: 8035434--8035517 Score: 66
Period size: 21 Copynumber: 4.5 Consensus size: 18
8035424 TTAAATTTTT
8035434 ATTTTGTTAATTTTTTAGAA
1 ATTTT-TTAATTTTTTA-AA
8035454 ATTTTTTGAATTTTTATTAAA
1 ATTTTTT-AA-TTTT-TTAAA
8035475 ATTTTTTAA-TTTTT-AA
1 ATTTTTTAATTTTTTAAA
* *
8035491 A-GTTTTCATATTTTTAAA
1 ATTTTTTAAT-TTTTTAAA
*
8035509 ATTTGTTAA
1 ATTTTTTAA
8035518 AATATTTCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
15 5 0.10
16 3 0.06
17 7 0.13
18 6 0.12
19 6 0.12
20 9 0.17
21 13 0.25
22 3 0.06
ACGTcount: A:0.32, C:0.01, G:0.06, T:0.61
Consensus pattern (18 bp):
ATTTTTTAATTTTTTAAA
Found at i:8035535 original size:28 final size:26
Alignment explanation
Indices: 8035482--8035535 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
8035472 AAAATTTTTT
*
8035482 AATTTTTAAAGTTTTCATATTTTTAA
1 AATTTTTAAAATTTTCATATTTTTAA
8035508 AATTTGTTAAAATATTTCA-ATTTGTTAA
1 AATTT-TTAAAAT-TTTCATATTT-TTAA
8035536 TTTGTTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.21
27 10 0.42
28 9 0.38
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (26 bp):
AATTTTTAAAATTTTCATATTTTTAA
Found at i:8035537 original size:26 final size:24
Alignment explanation
Indices: 8035477--8035541 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 24
8035467 TTATTAAAAT
*
8035477 TTTTTAATTT-TTAAAGTTTTCATA
1 TTTTTAATTTGTTAAAATTTTCA-A
8035501 TTTTTAAAATTTGTTAAAATATTTCAA
1 TTTTT--AATTTGTTAAAAT-TTTCAA
8035528 TTTGTTAATTTGTT
1 TTT-TTAATTTGTT
8035542 TATGATTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
24 5 0.14
26 13 0.37
27 10 0.29
28 7 0.20
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (24 bp):
TTTTTAATTTGTTAAAATTTTCAA
Found at i:8055955 original size:20 final size:22
Alignment explanation
Indices: 8055915--8055957 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
8055905 ATGTATGTGT
*
8055915 AAATAAATGACAAATATGAACA
1 AAATAAATGACAAATACGAACA
8055937 AAATAAAT-A-AAATACGAACA
1 AAATAAATGACAAATACGAACA
8055957 A
1 A
8055958 GGAAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 1 0.05
22 8 0.40
ACGTcount: A:0.67, C:0.09, G:0.07, T:0.16
Consensus pattern (22 bp):
AAATAAATGACAAATACGAACA
Found at i:8057360 original size:19 final size:18
Alignment explanation
Indices: 8057320--8057361 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
8057310 ATTTTCGTTG
*
8057320 AAAAATTCAACAAAATCT
1 AAAAATTCAACAAAATCC
8057338 AAAAATTTCAA-AAAAGTCC
1 AAAAA-TTCAACAAAA-TCC
8057357 AAAAA
1 AAAAA
8057362 ATTGCTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.64, C:0.14, G:0.02, T:0.19
Consensus pattern (18 bp):
AAAAATTCAACAAAATCC
Found at i:8061135 original size:21 final size:21
Alignment explanation
Indices: 8061109--8061153 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
8061099 TACAACTTTT
8061109 GAATTTAGCAAGTATGAAATA
1 GAATTTAGCAAGTATGAAATA
*
8061130 GAATTTAGCCAGTATGAAATA
1 GAATTTAGCAAGTATGAAATA
8061151 GAA
1 GAA
8061154 CTTACATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (21 bp):
GAATTTAGCAAGTATGAAATA
Found at i:8062198 original size:11 final size:11
Alignment explanation
Indices: 8062182--8062213 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8062172 AAATCTTTAT
8062182 TTTTTAATATA
1 TTTTTAATATA
8062193 TTTTT-A-ATA
1 TTTTTAATATA
8062202 TTTTTAATATA
1 TTTTTAATATA
8062213 T
1 T
8062214 AAATAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.42
10 2 0.11
11 9 0.47
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTTAATATA
Found at i:8063151 original size:13 final size:13
Alignment explanation
Indices: 8063133--8063157 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8063123 TTTAAACATG
8063133 TAAAAAGAGTTAA
1 TAAAAAGAGTTAA
8063146 TAAAAAGAGTTA
1 TAAAAAGAGTTA
8063158 TTTAGTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (13 bp):
TAAAAAGAGTTAA
Found at i:8070286 original size:14 final size:14
Alignment explanation
Indices: 8070267--8070293 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8070257 ATTAATATAA
8070267 ATTTTAAAAAATAT
1 ATTTTAAAAAATAT
8070281 ATTTTAAAAAATA
1 ATTTTAAAAAATA
8070294 ATTAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTTTAAAAAATAT
Found at i:8070409 original size:28 final size:28
Alignment explanation
Indices: 8070326--8070414 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
8070316 AAATTATAAT
* *
8070326 AAATATTTTAATTTTAATACTTAAATTTTAA
1 AAAT-TTTTAA-TATAATATTTAAATTTT-A
*
8070357 AAATTTATAATATAATTATTT-AATTTTA
1 AAATTTTTAATATAA-TATTTAAATTTTA
* *
8070385 AAATTTTTAATGTAATATTTAAATTATA
1 AAATTTTTAATATAATATTTAAATTTTA
8070413 AA
1 AA
8070415 TCTGATAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 5 0.10
28 22 0.44
29 10 0.20
30 9 0.18
31 4 0.08
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (28 bp):
AAATTTTTAATATAATATTTAAATTTTA
Found at i:8075950 original size:22 final size:22
Alignment explanation
Indices: 8075924--8075967 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8075914 TGTGTATTTA
8075924 TATTTGTAT-CTCTAGAATTAAG
1 TATTTGTATCCT-TAGAATTAAG
8075946 TATTTGTATCCTTAGAATTAAG
1 TATTTGTATCCTTAGAATTAAG
8075968 GATAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCTTAGAATTAAG
Found at i:8076253 original size:25 final size:25
Alignment explanation
Indices: 8076225--8076273 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
8076215 TGATTTCTAT
*
8076225 TTTAGGCCTTTATTG-CTGAACCCTA
1 TTTAGACCTTTATTGTC-GAACCCTA
8076250 TTTAGACCTTTATTGTCGAACCCT
1 TTTAGACCTTTATTGTCGAACCCT
8076274 TGTAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.41
Consensus pattern (25 bp):
TTTAGACCTTTATTGTCGAACCCTA
Found at i:8079938 original size:22 final size:22
Alignment explanation
Indices: 8079913--8079956 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8079903 TGTGTATTTA
*
8079913 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
8079935 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
8079957 GATAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:8082255 original size:2 final size:2
Alignment explanation
Indices: 8082250--8082276 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8082240 GTGTGTGTGT
8082250 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
8082277 GGAAAGAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8088412 original size:7 final size:7
Alignment explanation
Indices: 8088382--8088478 Score: 55
Period size: 7 Copynumber: 14.6 Consensus size: 7
8088372 TTTGGTTTGA
8088382 GTTTAGG
1 GTTTAGG
*
8088389 G-TTAGA
1 GTTTAGG
8088395 G-TTAGG
1 GTTTAGG
*
8088401 TTTTAGG
1 GTTTAGG
8088408 GTTTAGTAG
1 GTTTAG--G
*
8088417 GTTAAGG
1 GTTTAGG
*
8088424 G-TTAGC
1 GTTTAGG
* *
8088430 ATTTAGA
1 GTTTAGG
8088437 GTTTAGG
1 GTTTAGG
8088444 GTTT--G
1 GTTTAGG
*
8088449 GTTTAAG
1 GTTTAGG
8088456 GTTT--G
1 GTTTAGG
*
8088461 GCTTAGG
1 GTTTAGG
8088468 GTTTAGG
1 GTTTAGG
8088475 GTTT
1 GTTT
8088479 GGTTGTTTAG
Statistics
Matches: 69, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
5 9 0.13
6 12 0.17
7 42 0.61
9 6 0.09
ACGTcount: A:0.19, C:0.02, G:0.36, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:8088458 original size:12 final size:12
Alignment explanation
Indices: 8088437--8088554 Score: 66
Period size: 12 Copynumber: 9.9 Consensus size: 12
8088427 AGCATTTAGA
8088437 GTTTAGGGTTTG
1 GTTTAGGGTTTG
*
8088449 GTTTAAGGTTTG
1 GTTTAGGGTTTG
*
8088461 GCTTAGGGTTTAGG
1 GTTTAGGGTTT--G
8088475 GTTT--GG-TT-
1 GTTTAGGGTTTG
**
8088483 GTTTAGATTTTAG
1 GTTTAGGGTTT-G
* *
8088496 GATTAAGGTTTG
1 GTTTAGGGTTTG
*
8088508 GTTTAGAGTTT-
1 GTTTAGGGTTTG
* *
8088519 GTTTTGGTTTATG
1 GTTTAGGGTT-TG
* *
8088532 ATTTAGTGTTTG
1 GTTTAGGGTTTG
8088544 GTTTAGGGTTT
1 GTTTAGGGTTT
8088555 AAGGTTAATT
Statistics
Matches: 75, Mismatches: 22, Indels: 18
0.65 0.19 0.16
Matches are distributed among these distances:
8 4 0.05
11 11 0.15
12 43 0.57
13 13 0.17
14 4 0.05
ACGTcount: A:0.14, C:0.01, G:0.33, T:0.52
Consensus pattern (12 bp):
GTTTAGGGTTTG
Found at i:8093053 original size:17 final size:19
Alignment explanation
Indices: 8093018--8093059 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8093008 CTTTAGGGAC
*
8093018 CTTTTCATTATATGCGTTT
1 CTTTTCATTACATGCGTTT
*
8093037 -TTTTGATTACATG-GTTT
1 CTTTTCATTACATGCGTTT
8093054 CTTTTC
1 CTTTTC
8093060 TTTAGGAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.14, C:0.14, G:0.12, T:0.60
Consensus pattern (19 bp):
CTTTTCATTACATGCGTTT
Found at i:8095400 original size:3 final size:3
Alignment explanation
Indices: 8095392--8095427 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8095382 GAAAAATATC
8095392 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8095428 CTACTACTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8095432 original size:3 final size:3
Alignment explanation
Indices: 8095426--8095460 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
8095416 TTATTATTAT
8095426 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC T-C TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
8095461 ATTCTATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:8095812 original size:17 final size:18
Alignment explanation
Indices: 8095790--8095827 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
8095780 ATTTTTATTG
*
8095790 TTATTTTTCTCTT-TTTA
1 TTATTTTTCTATTATTTA
8095807 TTA-TTTTCTATTATTTA
1 TTATTTTTCTATTATTTA
8095824 TTAT
1 TTAT
8095828 CTAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTTTCTATTATTTA
Found at i:8098480 original size:22 final size:21
Alignment explanation
Indices: 8098455--8098502 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
8098445 TAAAAAATTT
*
8098455 AAAATAT-AAAATGATAAAATCA
1 AAAATATCAAAA-AATAAAAT-A
*
8098477 AAAAAATCAAAAAATAAAATA
1 AAAATATCAAAAAATAAAATA
8098498 AAAAT
1 AAAAT
8098503 GAAAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAATATCAAAAAATAAAATA
Found at i:8099907 original size:86 final size:86
Alignment explanation
Indices: 8099780--8100218 Score: 402
Period size: 86 Copynumber: 5.1 Consensus size: 86
8099770 GCTAGATTCT
* * *
8099780 AAGTTTTACAAAGGTTCTAGATTCACAAATATTTCAAGTTCATAAGGACCTTT-AGATTTGCAAG
1 AAGTTTCACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCGTAAGGA-CTTTCAGATTTGCAAG
* * *
8099844 AAGGAAATATTCGTATGATTTC
65 AATGAAATATTCATAAGATTTC
* ** * * ** *
8099866 AAGTTTCGCAAAGGTTCTAGATTTGCAAAGATTTTAGGTTCACAAGGACTTTCAGATTCGCAAGA
1 AAGTTTCACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCGTAAGGACTTTCAGATTTGCAAGA
*
8099931 ATGAAAGATTCATAAGATTTC
66 ATGAAATATTCATAAGATTTC
* * * * * * *
8099952 AAGTTTTATAAAGGTTCTAGATTCGCAAAGATTTCAAGTTCGCAAGGATTTTTAGATTAT-CAAA
1 AAGTTTCACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCGTAAGGACTTTCAGATT-TGCAAG
* *
8100016 AAT-TAATGATTCGTAAGATTTC
65 AATGAAAT-ATTCATAAGATTTC
** * * * * *
8100038 AAGTTTTGCAGAGGTTTTAGATTCACAAGGATTTCAAGTTCGTAAGGACTTTCAAATTTACAAGA
1 AAGTTTCACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCGTAAGGACTTTCAGATTTGCAAGA
* *
8100103 ATGAAAAATTCACAAGA-TTC
66 ATGAAATATTCATAAGATTTC
* * * * * * * * *
8100123 TAAGTTTCACAGAGGTTCAAGATTCATAAAGATTTTAGGTTTGTAAGAACTTTCAGATTCGTAAG
1 -AAGTTTCACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCGTAAGGACTTTCAGATTTGCAAG
*
8100188 AATGAAATATTCACAAGACTCTT-
65 AATGAAATATTCATAAGA-T-TTC
8100211 AAGTTTCA
1 AAGTTTCA
8100219 TAAAAAAAAT
Statistics
Matches: 287, Mismatches: 57, Indels: 17
0.80 0.16 0.05
Matches are distributed among these distances:
85 10 0.03
86 265 0.92
87 10 0.03
89 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (86 bp):
AAGTTTCACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCGTAAGGACTTTCAGATTTGCAAGA
ATGAAATATTCATAAGATTTC
Found at i:8100008 original size:172 final size:172
Alignment explanation
Indices: 8099720--8100157 Score: 456
Period size: 172 Copynumber: 2.5 Consensus size: 172
8099710 GCAAAATCGT
* * * * * *
8099720 AAAGA-TTCAAGATTCGCAAAGG-CTTTTAAATTCATAAGAAT-AGAAGATTCGCTAGATTCTAA
1 AAAGATTTCAAG-TTCAC-AAGGACTTTCAAATTCACAAGAATGA-AAAATTCACAAGATTCTAA
* *
8099782 GTTTTACAAAGGTTCTAGATTCACAAATATTTCAAGTTCATAAGGACCTTTAGATT-TGCAAGAA
63 GTTTTACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCACAAGGACCTTTAGATTAT-CAA-AA
* * **
8099846 GGAAAT-ATTCGTATGATTTCAAGTTTCGCAAAGGTTCTAGATTTGC
126 AGAAATGATTCGTAAGATTTCAAGTTTCGCAAAGGTTCTAGATTCAC
* * * * * *
8099892 AAAGATTTTAGGTTCACAAGGACTTTCAGATTCGCAAGAATGAAAGATTCATAAGATT-TCAAGT
1 AAAGATTTCAAGTTCACAAGGACTTTCAAATTCACAAGAATGAAAAATTCACAAGATTCT-AAGT
* * * ** **
8099956 TTTATAAAGGTTCTAGATTCGCAAAGATTTCAAGTTCGCAAGGATTTTTAGATTATCAAAAATTA
65 TTTACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCACAAGGACCTTTAGATTATCAAAAAGAA
* * *
8100021 ATGATTCGTAAGATTTCAAGTTTTGCAGAGGTTTTAGATTCAC
130 ATGATTCGTAAGATTTCAAGTTTCGCAAAGGTTCTAGATTCAC
* ** *
8100064 AAGGATTTCAAGTTCGTAAGGACTTTCAAATTTACAAGAATGAAAAATTCACAAGATTCTAAGTT
1 AAAGATTTCAAGTTCACAAGGACTTTCAAATTCACAAGAATGAAAAATTCACAAGATTCTAAGTT
* * * *
8100129 TCACAGAGGTTCAAGATTCATAAAGATTT
66 TTACAAAGGTTCTAGATTCACAAAGATTT
8100158 TAGGTTTGTA
Statistics
Matches: 217, Mismatches: 42, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
171 10 0.05
172 200 0.92
173 7 0.03
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (172 bp):
AAAGATTTCAAGTTCACAAGGACTTTCAAATTCACAAGAATGAAAAATTCACAAGATTCTAAGTT
TTACAAAGGTTCTAGATTCACAAAGATTTCAAGTTCACAAGGACCTTTAGATTATCAAAAAGAAA
TGATTCGTAAGATTTCAAGTTTCGCAAAGGTTCTAGATTCAC
Found at i:8100596 original size:55 final size:55
Alignment explanation
Indices: 8100394--8100645 Score: 201
Period size: 55 Copynumber: 4.6 Consensus size: 55
8100384 GAAACCACAA
* * * * *
8100394 GATCTGGATCGAGCCAAGATCGAGTGATCGAGA-TGAAACCATAAGTCAAGAAAAT
1 GATCTGGATTGAGCCAAGATCGAATGATCGAGACT-AAGCCATAAGTTAGGAAAAT
** * * * * *
8100449 GATCTAAATTGAGCTAAGATCAAATGATTGAGACTAAGCTACAAGTTAGGAAAAT
1 GATCTGGATTGAGCCAAGATCGAATGATCGAGACTAAGCCATAAGTTAGGAAAAT
* * * *
8100504 --T-TTGACTAAGCCAAGAT-GAAATAATCGAGACTAAGCCATAAGTTAGGAAAAT
1 GATCTGGATTGAGCCAAGATCG-AATGATCGAGACTAAGCCATAAGTTAGGAAAAT
* * * *
8100556 GATCTGGATTGAGCCAAGATCGAATGATCGAGATTGAGCCATAAGTCA-AAAGAAT
1 GATCTGGATTGAGCCAAGATCGAATGATCGAGACTAAGCCATAAGTTAGGAA-AAT
* * * * * *
8100611 GATTTGGACTAAGCCAAGATCAAACGATCAAGACT
1 GATCTGGATTGAGCCAAGATCGAATGATCGAGACT
8100646 GAACACAAGT
Statistics
Matches: 153, Mismatches: 37, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
52 40 0.26
53 1 0.01
54 3 0.02
55 107 0.70
56 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (55 bp):
GATCTGGATTGAGCCAAGATCGAATGATCGAGACTAAGCCATAAGTTAGGAAAAT
Found at i:8101020 original size:43 final size:44
Alignment explanation
Indices: 8100955--8101045 Score: 148
Period size: 43 Copynumber: 2.1 Consensus size: 44
8100945 CATCTCAACC
*
8100955 AATCTATCAATTCATCATTAGGTCACTTTATTT-GCCCTTTTTA
1 AATCTATCAATTCATCACTAGGTCACTTTATTTAGCCCTTTTTA
* *
8100998 AATCTATCAATTCATCACTAGGTCACTTTATTTATCCTTTTTTA
1 AATCTATCAATTCATCACTAGGTCACTTTATTTAGCCCTTTTTA
8101042 AATC
1 AATC
8101046 ATCTTTATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
43 32 0.73
44 12 0.27
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.46
Consensus pattern (44 bp):
AATCTATCAATTCATCACTAGGTCACTTTATTTAGCCCTTTTTA
Found at i:8104671 original size:17 final size:17
Alignment explanation
Indices: 8104649--8104685 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
8104639 CATACAAATG
*
8104649 AATGATAGATATATCTA
1 AATGATAGATATATATA
8104666 AATGATAGATATATATA
1 AATGATAGATATATATA
8104683 AAT
1 AAT
8104686 AATAACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.35
Consensus pattern (17 bp):
AATGATAGATATATATA
Found at i:8105751 original size:9 final size:9
Alignment explanation
Indices: 8105733--8105761 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8105723 TGATAAAATC
8105733 AAAAAT-AA
1 AAAAATAAA
8105741 AAAAATAAA
1 AAAAATAAA
8105750 AAAAATAAA
1 AAAAATAAA
8105759 AAA
1 AAA
8105762 GAAAAACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAATAAA
Found at i:8111869 original size:23 final size:25
Alignment explanation
Indices: 8111827--8111875 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
8111817 TTGGGTTAAA
*
8111827 GGTTAGAATTTAGAGTTTGG-CAAG
1 GGTTAGAATTTAGAGATTGGACAAG
*
8111851 GGTTAG-ATTTAGGGATTGGACAAG
1 GGTTAGAATTTAGAGATTGGACAAG
8111875 G
1 G
8111876 TTCGTATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.29, C:0.04, G:0.37, T:0.31
Consensus pattern (25 bp):
GGTTAGAATTTAGAGATTGGACAAG
Found at i:8111987 original size:17 final size:18
Alignment explanation
Indices: 8111955--8112005 Score: 77
Period size: 17 Copynumber: 2.9 Consensus size: 18
8111945 AGGGTTTAGT
*
8111955 CTTGGTTTAAGGTTTGAC
1 CTTGGTTTAGGGTTTGAC
8111973 CTTGG-TTAGGGTTTGAC
1 CTTGGTTTAGGGTTTGAC
*
8111990 CCTGGTTTAGGGTTTG
1 CTTGGTTTAGGGTTTG
8112006 GGTTAGGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 15 0.50
18 15 0.50
ACGTcount: A:0.12, C:0.12, G:0.33, T:0.43
Consensus pattern (18 bp):
CTTGGTTTAGGGTTTGAC
Found at i:8112033 original size:31 final size:31
Alignment explanation
Indices: 8111995--8112066 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
8111985 TTGACCCTGG
*
8111995 TTTAGGGTTTGGGTTAG-GTTTTGACTTATAA
1 TTTAGGGTTTGGGTTAGTG-TTTGACTCATAA
* *
8112026 TTTAGGGTATAGGTTAGTGTTTGACTCATAA
1 TTTAGGGTTTGGGTTAGTGTTTGACTCATAA
*
8112057 -TTAGGATTTG
1 TTTAGGGTTTG
8112067 ACCTTGGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
30 7 0.21
31 26 0.76
32 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.28, T:0.46
Consensus pattern (31 bp):
TTTAGGGTTTGGGTTAGTGTTTGACTCATAA
Found at i:8112094 original size:19 final size:19
Alignment explanation
Indices: 8112072--8112119 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
8112062 ATTTGACCTT
8112072 GGTTTTAGGGTAAGATT-AG
1 GGTTTTAGGGT-AGATTAAG
* *
8112091 GGTTTCA-GGTAGGTTAAG
1 GGTTTTAGGGTAGATTAAG
8112109 GGTTTTAGGGT
1 GGTTTTAGGGT
8112120 TTTTAGGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.17
18 11 0.46
19 9 0.38
ACGTcount: A:0.21, C:0.02, G:0.40, T:0.38
Consensus pattern (19 bp):
GGTTTTAGGGTAGATTAAG
Found at i:8112140 original size:28 final size:28
Alignment explanation
Indices: 8112098--8112168 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
8112088 TAGGGTTTCA
*
8112098 GGTAGG-TTAAGGGTTTTAGGGTTTTTAG
1 GGTAGGTTTAA-GGTTTTAAGGTTTTTAG
*
8112126 GGTAGGTTTATGGTTTTAAGGTTTTTAG
1 GGTAGGTTTAAGGTTTTAAGGTTTTTAG
8112154 GGTAGGTTTAAGGTT
1 GGTAGGTTTAAGGTT
8112169 GCGGGTAGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 36 0.92
29 3 0.08
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (28 bp):
GGTAGGTTTAAGGTTTTAAGGTTTTTAG
Found at i:8113883 original size:11 final size:11
Alignment explanation
Indices: 8113867--8113922 Score: 75
Period size: 11 Copynumber: 5.5 Consensus size: 11
8113857 AAATCCATAA
8113867 TTTGACTCAAG
1 TTTGACTCAAG
8113878 TTTGACT-AAG
1 TTTGACTCAAG
*
8113888 -TTGACTCAAA
1 TTTGACTCAAG
8113898 TTTGACT-AAG
1 TTTGACTCAAG
8113908 -TTGACTCAAG
1 TTTGACTCAAG
8113918 TTTGA
1 TTTGA
8113923 TATATATTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 12 0.31
10 10 0.26
11 17 0.44
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (11 bp):
TTTGACTCAAG
Found at i:8113893 original size:20 final size:20
Alignment explanation
Indices: 8113868--8113922 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
8113858 AATCCATAAT
8113868 TTGACTCAAGTTTGACTAAG
1 TTGACTCAAGTTTGACTAAG
*
8113888 TTGACTCAAATTTGACTAAG
1 TTGACTCAAGTTTGACTAAG
8113908 TTGACTCAAGTTTGA
1 TTGACTCAAGTTTGA
8113923 TATATATTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (20 bp):
TTGACTCAAGTTTGACTAAG
Found at i:8114637 original size:20 final size:20
Alignment explanation
Indices: 8114533--8114822 Score: 105
Period size: 20 Copynumber: 14.2 Consensus size: 20
8114523 ACATAAAAAG
8114533 AAAAAATTCTAAAAAATTCTT
1 AAAAAATTCTAAAAAATT-TT
*
8114554 AAAAAA-TAT-AAAAATTTT
1 AAAAAATTCTAAAAAATTTT
* *
8114572 AAAAACTTCCAAAATAA-TTT
1 AAAAAATTCTAAAA-AATTTT
* ** *
8114592 -AGAAA--CTAAAAAAAATC
1 AAAAAATTCTAAAAAATTTT
8114609 AAAACAATTCTAAAAAATTTT
1 AAAA-AATTCTAAAAAATTTT
* * *
8114630 AAAAAATTATAACATATTTT
1 AAAAAATTCTAAAAAATTTT
* **
8114650 TAAAAATT-TTCAAAATTTAT
1 AAAAAATTCTAAAAAATTT-T
*
8114670 AAAAAAATTTAATTTCAAAAAATTTT
1 -AAAAAA--T--TCT-AAAAAATTTT
* *
8114696 AAAAACTTCT-GAAAATTTT
1 AAAAAATTCTAAAAAATTTT
** *
8114715 AAAATTTTCT-AAAAATCTT
1 AAAAAATTCTAAAAAATTTT
* * **
8114734 AAAAATTTCAAAAAAAAAAAATT
1 AAAAAATTC---TAAAAAATTTT
* * * * *
8114757 GACAACTT-AACAAAAATTTG
1 AAAAAATTCTA-AAAAATTTT
*
8114777 AAACAATTCTAAAAAATTTT
1 AAAAAATTCTAAAAAATTTT
*
8114797 AAAAAATTATAAAAATATTTT
1 AAAAAATTCTAAAAA-ATTTT
8114818 AAAAA
1 AAAAA
8114823 TTTTATAATT
Statistics
Matches: 197, Mismatches: 49, Indels: 46
0.67 0.17 0.16
Matches are distributed among these distances:
16 2 0.01
17 6 0.03
18 9 0.05
19 52 0.26
20 60 0.30
21 39 0.20
23 14 0.07
25 6 0.03
26 2 0.01
27 7 0.04
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.33
Consensus pattern (20 bp):
AAAAAATTCTAAAAAATTTT
Found at i:8114664 original size:10 final size:9
Alignment explanation
Indices: 8114621--8114747 Score: 71
Period size: 9 Copynumber: 13.6 Consensus size: 9
8114611 AACAATTCTA
8114621 AAAAATTTT
1 AAAAATTTT
*
8114630 AAAAAATTAT
1 -AAAAATTTT
*
8114640 AACATATTTTT
1 AA-A-AATTTT
8114651 AAAAATTTT
1 AAAAATTTT
*
8114660 CAAAATTTAT
1 AAAAATTT-T
*
8114670 AAAAAAATTT
1 -AAAAATTTT
*
8114680 ---AATTTCA
1 AAAAATTT-T
8114687 AAAAATTTT
1 AAAAATTTT
*
8114696 AAAAACTTCT
1 AAAAA-TTTT
*
8114706 GAAAATTTT
1 AAAAATTTT
*
8114715 AAAATTTTCT
1 AAAAATTT-T
*
8114725 AAAAATCTT
1 AAAAATTTT
*
8114734 AAAAATTTC
1 AAAAATTTT
8114743 AAAAA
1 AAAAA
8114748 AAAAAAATTG
Statistics
Matches: 88, Mismatches: 19, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
6 4 0.05
9 41 0.47
10 31 0.35
11 12 0.14
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (9 bp):
AAAAATTTT
Found at i:8114823 original size:11 final size:10
Alignment explanation
Indices: 8114533--8114827 Score: 78
Period size: 10 Copynumber: 31.1 Consensus size: 10
8114523 ACATAAAAAG
*
8114533 AAAAAATTCT
1 AAAAAATTTT
8114543 AAAAAATTCTT
1 AAAAAATT-TT
*
8114554 AAAAAA-TAT
1 AAAAAATTTT
8114563 -AAAAATTTT
1 AAAAAATTTT
* **
8114572 AAAAACTTCC
1 AAAAAATTTT
8114582 AAAATAA-TTT
1 AAAA-AATTTT
* *
8114592 -AGAAA--CT
1 AAAAAATTTT
** *
8114599 AAAAAAAATC
1 AAAAAATTTT
*
8114609 AAAACAATTCT
1 AAAA-AATTTT
8114620 AAAAAATTTT
1 AAAAAATTTT
*
8114630 AAAAAATTAT
1 AAAAAATTTT
* *
8114640 AACATATTTT
1 AAAAAATTTT
*
8114650 TAAAAATTTT
1 AAAAAATTTT
*
8114660 -CAAAATTTAT
1 AAAAAATTT-T
*
8114670 AAAAAAATTT
1 AAAAAATTTT
*
8114680 ----AATTTC
1 AAAAAATTTT
8114686 AAAAAATTTT
1 AAAAAATTTT
* *
8114696 AAAAACTTCT
1 AAAAAATTTT
*
8114706 -GAAAATTTT
1 AAAAAATTTT
8114715 --AAAATTTT
1 AAAAAATTTT
* *
8114723 CTAAAAATCTT
1 -AAAAAATTTT
*
8114734 -AAAAATTTC
1 AAAAAATTTT
8114743 AAAAAA----
1 AAAAAATTTT
8114749 AAAAAA--TT
1 AAAAAATTTT
* * * *
8114757 -GACAACTTA
1 AAAAAATTTT
*
8114766 ACAAAAATTTG
1 A-AAAAATTTT
* *
8114777 AAACAATTCT
1 AAAAAATTTT
8114787 AAAAAATTTT
1 AAAAAATTTT
*
8114797 AAAAAATTAT
1 AAAAAATTTT
8114807 AAAAATATTTT
1 AAAAA-ATTTT
8114818 -AAAAATTTT
1 AAAAAATTTT
8114827 A
1 A
8114828 TAATTTACTA
Statistics
Matches: 205, Mismatches: 54, Indels: 52
0.66 0.17 0.17
Matches are distributed among these distances:
6 10 0.05
7 4 0.02
8 19 0.09
9 31 0.15
10 104 0.51
11 37 0.18
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:8114849 original size:18 final size:19
Alignment explanation
Indices: 8114817--8114852 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8114807 AAAAATATTT
*
8114817 TAAAAATTTTATAATTTAC
1 TAAAAACTTTATAATTTAC
8114836 TAAAAACTTT-TAATTTA
1 TAAAAACTTTATAATTTA
8114853 AAAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (19 bp):
TAAAAACTTTATAATTTAC
Found at i:8114905 original size:18 final size:17
Alignment explanation
Indices: 8114882--8115015 Score: 67
Period size: 18 Copynumber: 7.5 Consensus size: 17
8114872 CTAAATTTTT
8114882 TTTTTAAAACTTCTAAAA
1 TTTTTAAAA-TTCTAAAA
*
8114900 TTTTTAAATATTCAAAAAA
1 TTTTTAAA-ATTC-TAAAA
*
8114919 TGTTTTAAATTTCTCAAAA
1 T-TTTTAAAATTCT-AAAA
* *
8114938 TTTTTTATATT-TATAAA
1 TTTTTAAAATTCTA-AAA
** *
8114955 AATTTAAAATAT-GAAATA
1 TTTTTAAAAT-TCTAAA-A
*
8114973 TTTTTATAAATTATAAAA
1 TTTTTA-AAATTCTAAAA
* * *
8114991 TTATCATAATT-TAAAA
1 TTTTTAAAATTCTAAAA
8115007 TTTTTAAAA
1 TTTTTAAAA
8115016 ATTTTGAAAG
Statistics
Matches: 87, Mismatches: 20, Indels: 20
0.69 0.16 0.16
Matches are distributed among these distances:
16 12 0.14
17 16 0.18
18 31 0.36
19 21 0.24
20 7 0.08
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (17 bp):
TTTTTAAAATTCTAAAA
Found at i:8114943 original size:19 final size:19
Alignment explanation
Indices: 8114881--8114959 Score: 72
Period size: 19 Copynumber: 4.2 Consensus size: 19
8114871 TCTAAATTTT
*
8114881 TTTTTTAAAACTTCT-AAAA
1 TTTTTT-AAATTTCTAAAAA
*
8114900 -TTTTTAAATATTCAAAAAA
1 TTTTTTAAAT-TTCTAAAAA
* *
8114919 TGTTTTAAATTTCTCAAAA
1 TTTTTTAAATTTCTAAAAA
* *
8114938 TTTTTTATATTTATAAAAA
1 TTTTTTAAATTTCTAAAAA
8114957 TTT
1 TTT
8114960 AAAATATGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
17 3 0.06
18 8 0.17
19 29 0.60
20 8 0.17
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (19 bp):
TTTTTTAAATTTCTAAAAA
Found at i:8115069 original size:16 final size:16
Alignment explanation
Indices: 8115050--8115084 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
8115040 AAAAATTAAA
8115050 AAAAATAAAATTCTAT
1 AAAAATAAAATTCTAT
8115066 AAAAATAAAATTCTAT
1 AAAAATAAAATTCTAT
8115082 AAA
1 AAA
8115085 TTTATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATAAAATTCTAT
Found at i:8115069 original size:17 final size:17
Alignment explanation
Indices: 8115031--8115084 Score: 67
Period size: 16 Copynumber: 3.2 Consensus size: 17
8115021 GAAAGTTTTT
*
8115031 TAAAAAATTAAAAAT-TA
1 TAAAAAA-TAAAATTCTA
*
8115048 AAAAAAATAAAATTCTA
1 TAAAAAATAAAATTCTA
8115065 T-AAAAATAAAATTCTA
1 TAAAAAATAAAATTCTA
8115081 TAAA
1 TAAA
8115085 TTTATAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 22 0.69
17 10 0.31
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAAAAATAAAATTCTA
Found at i:8115148 original size:8 final size:8
Alignment explanation
Indices: 8115135--8115182 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
8115125 TTCCTTAATT
8115135 ATTTTTGA
1 ATTTTTGA
*
8115143 ATTTTTTAAA
1 A-TTTTT-GA
8115153 ATTTTCTAGA
1 ATTTT-T-GA
8115163 ATTTTTGA
1 ATTTTTGA
8115171 ATTTTTGA
1 ATTTTTGA
8115179 ATTT
1 ATTT
8115183 GTTTAAAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 15 0.43
9 10 0.29
10 10 0.29
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.60
Consensus pattern (8 bp):
ATTTTTGA
Found at i:8115206 original size:19 final size:19
Alignment explanation
Indices: 8115184--8115224 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8115174 TTTGAATTTG
*
8115184 TTTAAAAGTTTTAAAAGAT
1 TTTAAAAGTTTTAAAAAAT
* *
8115203 TTTAGAATTTTTAAAAAAT
1 TTTAAAAGTTTTAAAAAAT
8115222 TTT
1 TTT
8115225 TAGAATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (19 bp):
TTTAAAAGTTTTAAAAAAT
Found at i:8115225 original size:20 final size:19
Alignment explanation
Indices: 8115192--8115232 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
8115182 TGTTTAAAAG
*
8115192 TTTTAAAAGATTTTAGAAT
1 TTTTAAAAAATTTTAGAAT
8115211 TTTTAAAAAATTTTTAGAAT
1 TTTTAAAAAA-TTTTAGAAT
8115231 TT
1 TT
8115233 ATTTTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (19 bp):
TTTTAAAAAATTTTAGAAT
Found at i:8115310 original size:19 final size:20
Alignment explanation
Indices: 8115281--8115333 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
8115271 TTAGAAATTT
8115281 ATTTTTGAAAAATAGTTT-GA
1 ATTTTT-AAAAATAGTTTAGA
* *
8115301 ATTTTTAAAAATTGTTTAGG
1 ATTTTTAAAAATAGTTTAGA
8115321 ATTTTTAAAAATA
1 ATTTTTAAAAATA
8115334 TTTTTTAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 10 0.34
20 19 0.66
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (20 bp):
ATTTTTAAAAATAGTTTAGA
Found at i:8115387 original size:20 final size:21
Alignment explanation
Indices: 8115363--8115410 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8115353 ATTTAAAGAA
*
8115363 AATTTTAACTTTTAGATTTTT
1 AATTTTAACTTTTAAATTTTT
* *
8115384 -ATTTGAATTTTTAAATTTTT
1 AATTTTAACTTTTAAATTTTT
8115404 AATTTTA
1 AATTTTA
8115411 CAAATATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (21 bp):
AATTTTAACTTTTAAATTTTT
Found at i:8115973 original size:20 final size:20
Alignment explanation
Indices: 8115948--8115996 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
8115938 TATTTATTAT
*
8115948 ATAAAATTTGTTAATAAATA
1 ATAAAATTTCTTAATAAATA
8115968 ATAAAATTTCTTAATAAATA
1 ATAAAATTTCTTAATAAATA
*
8115988 ACAAAATTT
1 ATAAAATTT
8115997 ATTCAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (20 bp):
ATAAAATTTCTTAATAAATA
Found at i:8116047 original size:19 final size:18
Alignment explanation
Indices: 8116015--8116053 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 18
8116005 TTTTTTAATG
8116015 TATTATATAATT-AAATT
1 TATTATATAATTAAAATT
8116032 TATTATATTAAATTAAAATT
1 TATTATA-T-AATTAAAATT
8116052 TA
1 TA
8116054 ATTTTAGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 4 0.21
20 7 0.37
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTATATAATTAAAATT
Found at i:8119849 original size:18 final size:18
Alignment explanation
Indices: 8119828--8119876 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
8119818 ATTTTATTCA
*
8119828 TTTTATTTTTATTCTTAT
1 TTTTATTTTTATTATTAT
8119846 TTTTACTTGATTTATTATTAT
1 TTTTA-TT--TTTATTATTAT
8119867 TATTTATTTT
1 T-TTTATTTT
8119877 ATTTTAAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 5 0.19
19 4 0.15
21 13 0.50
22 4 0.15
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTATTTTTATTATTAT
Found at i:8119877 original size:18 final size:17
Alignment explanation
Indices: 8119816--8119879 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
8119806 CAACTTTTTG
8119816 TTATTTTATTCATTTTAT
1 TTATTTTATT-ATTTTAT
*
8119834 TT-TTATTCTTATTTTTACT
1 TTATT-TTATTA-TTTTA-T
*
8119853 TGA-TTTATTATTATTAT
1 TTATTTTATTATT-TTAT
8119870 TTATTTTATT
1 TTATTTTATT
8119880 TTAAGATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
17 8 0.22
18 25 0.69
19 3 0.08
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.72
Consensus pattern (17 bp):
TTATTTTATTATTTTAT
Found at i:8119877 original size:27 final size:26
Alignment explanation
Indices: 8119816--8119879 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
8119806 CAACTTTTTG
*
8119816 TTATTTTATTCATTTTATTTTTATTC
1 TTATTTTATTCATTTTATTATTATTC
* *
8119842 TTATTTTTACTTGA-TTTATTATTATTAT
1 TTA-TTTTA-TTCATTTTATTATTATT-C
8119870 TTATTTTATT
1 TTATTTTATT
8119880 TTAAGATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
26 5 0.16
27 21 0.66
28 6 0.19
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.72
Consensus pattern (26 bp):
TTATTTTATTCATTTTATTATTATTC
Found at i:8120775 original size:17 final size:15
Alignment explanation
Indices: 8120753--8120804 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 15
8120743 TTTTTTAAGG
8120753 TTTTTTTAGTATTTTAT
1 TTTTTTTA-T-TTTTAT
8120770 TTTTTTTATTTATGTAT
1 TTTTTTTATTT-T-TAT
8120787 TTTTTTT-TTTTTAT
1 TTTTTTTATTTTTAT
8120801 TTTT
1 TTTT
8120805 GCATGATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
14 7 0.21
15 3 0.09
16 5 0.15
17 18 0.55
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (15 bp):
TTTTTTTATTTTTAT
Found at i:8120786 original size:22 final size:21
Alignment explanation
Indices: 8120753--8120802 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 21
8120743 TTTTTTAAGG
8120753 TTTT-TTTAGTATTTTATTTT
1 TTTTATTTAGTATTTTATTTT
*
8120773 TTTTATTTATGTATTTTTTTTT
1 TTTTATTTA-GTATTTTATTTT
8120795 TTTTATTT
1 TTTTATTT
8120803 TTGCATGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 4 0.15
21 4 0.15
22 19 0.70
ACGTcount: A:0.14, C:0.00, G:0.04, T:0.82
Consensus pattern (21 bp):
TTTTATTTAGTATTTTATTTT
Found at i:8121456 original size:53 final size:52
Alignment explanation
Indices: 8121394--8121586 Score: 208
Period size: 53 Copynumber: 3.6 Consensus size: 52
8121384 AAAAAAAAGA
* * *
8121394 ATTTTTAAATAGGCCCAAATTGTGAAAAATTTAAAAATTCTAAAAAGGAAAAT
1 ATTTCTAAATAGGCCCAAATGGTGGAAAATTTAAAAATT-TAAAAAGGAAAAT
* * ** ** *
8121447 ATTTCTAAATTGACCCAAATGGTGGAAAATTTAAAAATAAAAAATAATAAAAAG
1 ATTTCTAAATAGGCCCAAATGGTGGAAAATTTAAAAAT-TTAAA-AAGGAAAAT
*
8121501 AGTTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAATTTAAAAAGAGAAAAT
1 A-TTTCTAAATAGGCCCAAATGGTGGAAAATTTAAAAATTTAAAAAG-GAAAAT
*
8121555 ATTTCTAATTTA-GCCCAAATGGTGGAATAATT
1 ATTTCTAA-ATAGGCCCAAATGGTGGAA-AATT
8121587 AGATATATTT
Statistics
Matches: 114, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
53 59 0.52
54 21 0.18
55 34 0.30
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (52 bp):
ATTTCTAAATAGGCCCAAATGGTGGAAAATTTAAAAATTTAAAAAGGAAAAT
Found at i:8121514 original size:108 final size:109
Alignment explanation
Indices: 8121381--8121586 Score: 310
Period size: 108 Copynumber: 1.9 Consensus size: 109
8121371 TTTTCTTTCC
* *
8121381 AATAAAAAAAAGAATTTTTAAATAGGCCCAAATTGTGAAAAATTTAAAAATTCTAAAAAG-GAAA
1 AATAAAAAAAAGAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATT-TAAAAAGAGAAA
8121445 ATATTTCTAAATTGA-CCCAAATGGTGGAA-AATTTAAAAATAAAA
65 ATATTTCT-AATTGAGCCCAAATGGTGGAATAATTTAAAAATAAAA
* * * *
8121489 AATAATAAAAAGAGTTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAATTTAAAAAGAGAAAA
1 AATAAAAAAAAGAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATTTAAAAAGAGAAAA
*
8121554 TATTTCTAATTTAGCCCAAATGGTGGAATAATT
66 TATTTCTAATTGAGCCCAAATGGTGGAATAATT
8121587 AGATATATTT
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
107 12 0.14
108 72 0.82
109 4 0.05
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.28
Consensus pattern (109 bp):
AATAAAAAAAAGAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAAAAATTTAAAAAGAGAAAA
TATTTCTAATTGAGCCCAAATGGTGGAATAATTTAAAAATAAAA
Found at i:8121948 original size:54 final size:54
Alignment explanation
Indices: 8121884--8122027 Score: 152
Period size: 54 Copynumber: 2.7 Consensus size: 54
8121874 TTTTCTTTTC
* *
8121884 AATAAAAAAAAGAATTTTTAAATAGGCAC-AAATTGTGAAAAATTTAAAAATAAA
1 AATAAAAAAAAGAATTTCTAAATAGGC-CTAAATGGTGAAAAATTTAAAAATAAA
* * * *
8121938 AATAATAAAAAGAGTTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAATTCAA
1 AATAAAAAAAAGAATTTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAA-TAAA
* * *
8121993 AA-AAAGAAAA-TATTTCTAATTTA-GCCTAAATGGTG
1 AATAAAAAAAAGAATTTCTAA-ATAGGCCTAAATGGTG
8122028 GAATAATTAG
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
53 20 0.26
54 51 0.67
55 5 0.07
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.28
Consensus pattern (54 bp):
AATAAAAAAAAGAATTTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATAAA
Found at i:8122622 original size:15 final size:15
Alignment explanation
Indices: 8122602--8122633 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8122592 TTTACTAACA
*
8122602 TTTTCTTTTTTATTT
1 TTTTCTCTTTTATTT
8122617 TTTTCTCTTTTATTT
1 TTTTCTCTTTTATTT
8122632 TT
1 TT
8122634 AGGGCATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTCTCTTTTATTT
Found at i:8126111 original size:19 final size:18
Alignment explanation
Indices: 8126063--8126111 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
8126053 TACTATGGAT
8126063 TGAAAAAAAAAGGAAAAA
1 TGAAAAAAAAAGGAAAAA
* *
8126081 AGAGAAAAAAAATGAAAAA
1 TGA-AAAAAAAAGGAAAAA
8126100 TGAAAAATAAAA
1 TGAAAAA-AAAA
8126112 AAGAGAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (18 bp):
TGAAAAAAAAAGGAAAAA
Found at i:8127394 original size:21 final size:21
Alignment explanation
Indices: 8127370--8127416 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8127360 AAAGAAATTT
* * *
8127370 TTTGATTTTCGAATGAGAATC
1 TTTGAATTTCAAATGAAAATC
8127391 TTTGAATTTCAAATGAAAATC
1 TTTGAATTTCAAATGAAAATC
8127412 TTTGA
1 TTTGA
8127417 GGTATGAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (21 bp):
TTTGAATTTCAAATGAAAATC
Found at i:8127468 original size:20 final size:21
Alignment explanation
Indices: 8127440--8127492 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
8127430 AAATTTTTGG
*
8127440 AATGTGAATCTTCGAA-CTCA
1 AATGAGAATCTTCGAATCTCA
* *
8127460 AATGAGAATCTTTGAATTTCA
1 AATGAGAATCTTCGAATCTCA
*
8127481 AATAAGAATCTT
1 AATGAGAATCTT
8127493 TGAGGTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (21 bp):
AATGAGAATCTTCGAATCTCA
Found at i:8127483 original size:21 final size:20
Alignment explanation
Indices: 8127440--8127495 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
8127430 AAATTTTTGG
* *
8127440 AATGTGAATCTTCGAACTCA
1 AATGAGAATCTTTGAACTCA
*
8127460 AATGAGAATCTTTGAATTTCA
1 AATGAGAATCTTTGAA-CTCA
*
8127481 AATAAGAATCTTTGA
1 AATGAGAATCTTTGA
8127496 GGTGTGAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (20 bp):
AATGAGAATCTTTGAACTCA
Found at i:8127512 original size:79 final size:79
Alignment explanation
Indices: 8127381--8127665 Score: 414
Period size: 79 Copynumber: 3.6 Consensus size: 79
8127371 TTGATTTTCG
* ** * *
8127381 AATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAGGTATGAAACTAAAAATTTTTGGAATGTG
1 AATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
*
8127446 AATCTTCGAACTCA
66 AATCTTTGAACTCA
8127460 AATGAGAATCTTTGAATTTCAAAT-AAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGT
1 AATGAGAATCTTTGAATTTCAAATGAA-AATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGT
*
8127524 GAATATTTGAACTCA
65 GAATCTTTGAACTCA
* *
8127539 AATGAGAATTTTTGAATTTTC-AATGACAAAT-TTTGAGGTGTGAAACCCTAAATTTGTCGAATG
1 AATGAGAATCTTTGAA-TTTCAAATGA-AAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATG
8127602 TGAATCTTTGAACTCA
64 TGAATCTTTGAACTCA
* * *
8127618 AATAAGAATCTTTGAGTTTCAAATAAAAATCTTTGAGGTGTGAAACCC
1 AATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAGGTGTGAAACCC
8127666 TAGTGTCCGT
Statistics
Matches: 186, Mismatches: 14, Indels: 12
0.88 0.07 0.06
Matches are distributed among these distances:
78 10 0.05
79 167 0.90
80 8 0.04
81 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (79 bp):
AATGAGAATCTTTGAATTTCAAATGAAAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
AATCTTTGAACTCA
Found at i:8127628 original size:20 final size:21
Alignment explanation
Indices: 8127603--8127654 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8127593 TGTCGAATGT
8127603 GAATCTTTGA-ACTCAAATAA
1 GAATCTTTGAGACTCAAATAA
**
8127623 GAATCTTTGAGTTTCAAATAA
1 GAATCTTTGAGACTCAAATAA
*
8127644 AAATCTTTGAG
1 GAATCTTTGAG
8127655 GTGTGAAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (21 bp):
GAATCTTTGAGACTCAAATAA
Found at i:8127641 original size:21 final size:21
Alignment explanation
Indices: 8127615--8127654 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8127605 ATCTTTGAAC
*
8127615 TCAAATAAGAATCTTTGAGTT
1 TCAAATAAAAATCTTTGAGTT
8127636 TCAAATAAAAATCTTTGAG
1 TCAAATAAAAATCTTTGAG
8127655 GTGTGAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (21 bp):
TCAAATAAAAATCTTTGAGTT
Found at i:8127808 original size:20 final size:20
Alignment explanation
Indices: 8127783--8127823 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8127773 CCCTAATTTG
8127783 TCAAATGTA-AACCTTTGAAC
1 TCAAATG-AGAACCTTTGAAC
*
8127803 TCAAATGAGAAGCTTTGAAC
1 TCAAATGAGAACCTTTGAAC
8127823 T
1 T
8127824 TTTGGATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (20 bp):
TCAAATGAGAACCTTTGAAC
Found at i:8128127 original size:41 final size:41
Alignment explanation
Indices: 8128082--8128284 Score: 309
Period size: 41 Copynumber: 4.9 Consensus size: 41
8128072 CAATGAGCCT
* *
8128082 TTTATTTTTCAAAGTTGTGGTGCTTTTGTTTAGAGGAGCAA
1 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAA
* *
8128123 TTTA-TTTTCTAAAGTTGTGGTGCCTCTATTTAAAGGAGCAA
1 TTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAGAGGAGCAA
* *
8128164 TTTATTTTTCAAAGTTGTGGTGCCCCTGTTTAGAGGAACAA
1 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAA
* *
8128205 TTTATTTTTTCAAAGTTGTGGTGCCTCTATTTATAGGAGCAA
1 TTTA-TTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAA
8128247 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAG
1 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAG
8128285 TTTTGTTTAC
Statistics
Matches: 145, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 5 0.03
41 98 0.68
42 42 0.29
ACGTcount: A:0.23, C:0.11, G:0.22, T:0.43
Consensus pattern (41 bp):
TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAA
Found at i:8128261 original size:83 final size:82
Alignment explanation
Indices: 8128082--8128283 Score: 341
Period size: 83 Copynumber: 2.5 Consensus size: 82
8128072 CAATGAGCCT
* * *
8128082 TTTATTTTTCAAAGTTGTGGTGCTTTTGTTTAGAGGAGCAATTTATTTTCTAAAGTTGTGGTGCC
1 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAACAATTTATTTTCTAAAGTTGTGGTGCC
8128147 TCTATTTAAAGGAGCAA
66 TCTATTTAAAGGAGCAA
* *
8128164 TTTATTTTTCAAAGTTGTGGTGCCCCTGTTTAGAGGAACAATTTATTTTTTCAAAGTTGTGGTGC
1 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAACAATTTATTTTCT-AAAGTTGTGGTGC
*
8128229 CTCTATTTATAGGAGCAA
65 CTCTATTTAAAGGAGCAA
8128247 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGA
1 TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGA
8128284 GTTTTGTTTA
Statistics
Matches: 112, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 46 0.41
83 66 0.59
ACGTcount: A:0.23, C:0.11, G:0.22, T:0.44
Consensus pattern (82 bp):
TTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAACAATTTATTTTCTAAAGTTGTGGTGCC
TCTATTTAAAGGAGCAA
Found at i:8129431 original size:18 final size:18
Alignment explanation
Indices: 8129410--8129450 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
8129400 TTTTTTAATA
*
8129410 TTTTATTTATTTATTTAT
1 TTTTATTTATGTATTTAT
*
8129428 TTTTATTTATGTGTTTAT
1 TTTTATTTATGTATTTAT
8129446 TTTTA
1 TTTTA
8129451 GTGTTTTCGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTTATTTATGTATTTAT
Found at i:8129798 original size:184 final size:177
Alignment explanation
Indices: 8129489--8130003 Score: 484
Period size: 184 Copynumber: 2.9 Consensus size: 177
8129479 AAATAAAAAG
* * * * *
8129489 AAAAATAAGAAATTTTGGGAATAAATATTAATTATTCAATGATGAAATTTATAAAAATTTCAAAT
1 AAAAATAA-AAAATTT-GGAATAAATA-TAATTA-CCAAGGATGAGATTTTTAAAAATTTCAAAT
* *
8129554 GGTAAATTTT-TATAAAAT-TCTTAAGTGAGAAATTT-TATCTAAATTTATCCCAAATGGTGAAA
62 GGTAAATTTTCTA-AAAATCTC-TATGTGAGAAATTTCT-TCTAAATTTGTCCCAAATGGTGAAA
* * *
8129616 TAATTTAGATAAAGTTTCAATAACAATAATTAATGT-TTATTTTCAAACAAAAAAATA
124 TAATTTAAACAAAGTTTCAATAAAAATAA-T--TGTATTATTTTCAAA-AAAAAAATA
*
8129673 AAAAATAAAAAATTTGGAATTAAATACTAATTACCCAAGGATGAGATTTTTAGAAATTTCAAATG
1 AAAAATAAAAAATTTGGAA-TAAATA-TAATTA-CCAAGGATGAGATTTTTAAAAATTTCAAATG
*
8129738 GTAAATTTTCTAAGAAATCTCTATGTGAGAAATTTCTTCTAAATTTGGCCCAAATGGTGAAATAA
63 GTAAATTTTCTAA-AAATCTCTATGTGAGAAATTTCTTCTAAATTTGTCCCAAATGGTGAAATAA
* * * * *
8129803 TTTAAACGAAGTTTCAATAAAAATAATTGTATTCTTTTCCAAATAAAAATT
127 TTTAAACAAAGTTTCAATAAAAATAATTGTATTATTTTCAAAAAAAAAATA
***** * *
8129854 TGGGGTAAAAATATTT-G-AT-AAT-T-A-T-CCAAGGATTAGATTTTTATAAATTTCAAATGGT
1 AAAAATAAAAA-ATTTGGAATAAATATAATTACCAAGGATGAGATTTTTAAAAATTTCAAATGGT
* *
8129912 AAA-TTTCTAAAAAATCCCTATGTGAGAAATTTTCTT-TAAATTTGTCCTAAATGGTTG-AATAA
65 AAATTTTCT-AAAAATCTCTATGTGAGAAA-TTTCTTCTAAATTTGTCCCAAATGG-TGAAATAA
* * *
8129974 TTTAAATGAAA-TTACCATAAAAATAATTGT
127 TTTAAA-CAAAGTTTCAATAAAAATAATTGT
8130004 CATATTATTT
Statistics
Matches: 287, Mismatches: 33, Indels: 35
0.81 0.09 0.10
Matches are distributed among these distances:
171 66 0.23
172 46 0.16
174 1 0.00
175 1 0.00
176 1 0.00
178 3 0.01
179 1 0.00
180 1 0.00
181 17 0.06
182 17 0.06
183 55 0.19
184 75 0.26
185 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (177 bp):
AAAAATAAAAAATTTGGAATAAATATAATTACCAAGGATGAGATTTTTAAAAATTTCAAATGGTA
AATTTTCTAAAAATCTCTATGTGAGAAATTTCTTCTAAATTTGTCCCAAATGGTGAAATAATTTA
AACAAAGTTTCAATAAAAATAATTGTATTATTTTCAAAAAAAAAATA
Found at i:8130219 original size:56 final size:55
Alignment explanation
Indices: 8130033--8130222 Score: 190
Period size: 57 Copynumber: 3.4 Consensus size: 55
8130023 TAAAAAAAGA
**
8130033 ATTTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATT--CGAAAAAAGAAAAT
1 ATTTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATTAAAAAAAAAAGAAAAT
* * * * * *
8130086 ATTTTTAAATTA-ACCAAAATAGTGAAAAATTTAAAAA-TAAAAAAAATAATAAAAAG
1 ATTTCTAAA-TAGGCCTAAATGGTGAAAAATTTAAAAATTAAAAAAAA-AA-GAAAAT
* * *
8130142 AGTTTCTAAACAGGCCCAAATGGTGAAAAATTTAGAAATTAAAAAAAAAGAGAAAAT
1 A-TTTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATTAAAAAAAAA-AGAAAAT
* *
8130199 ATTTCTAATTTGGCCTAAATGGTG
1 ATTTCTAAATAGGCCTAAATGGTG
8130223 GAATAATTAG
Statistics
Matches: 108, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
52 1 0.01
53 30 0.28
54 6 0.06
55 2 0.02
56 25 0.23
57 34 0.31
58 10 0.09
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (55 bp):
ATTTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATTAAAAAAAAAAGAAAAT
Found at i:8134597 original size:30 final size:30
Alignment explanation
Indices: 8134530--8134587 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8134520 TTCAATTGAA
* *
8134530 ATAAAAATAAATATTTAAGAGTTCAATTTG
1 ATAAAAATAAATATTTAAAAATTCAATTTG
*
8134560 ATAAAAATAAATATTTAAAAATTTAATT
1 ATAAAAATAAATATTTAAAAATTCAATT
8134588 GATCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (30 bp):
ATAAAAATAAATATTTAAAAATTCAATTTG
Found at i:8136628 original size:25 final size:26
Alignment explanation
Indices: 8136592--8136644 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
8136582 ATGGTTCATT
8136592 CACATTCAACCCAAAAAGAACTATAC
1 CACATTCAACCCAAAAAGAACTATAC
8136618 CACATTC-ACCCAAAAAGAACTATAC
1 CACATTCAACCCAAAAAGAACTATAC
8136643 CA
1 CA
8136645 ACACTTGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.74
26 7 0.26
ACGTcount: A:0.49, C:0.32, G:0.04, T:0.15
Consensus pattern (26 bp):
CACATTCAACCCAAAAAGAACTATAC
Found at i:8140686 original size:85 final size:86
Alignment explanation
Indices: 8140591--8140755 Score: 260
Period size: 85 Copynumber: 1.9 Consensus size: 86
8140581 TTTAGAATAA
* * * *
8140591 AAAAACCCTAAATTTCTTAAATTTAATAAACCCTAAATAGAAGATTTCAACC-AACCTTAATGAA
1 AAAAACCCTAAATTTCTTAAATTTAACAAACACTAAACAAAAGATTTCAACCAAACCTTAATGAA
8140655 ATGGAAGTGAGAATTGCACAT
66 ATGGAAGTGAGAATTGCACAT
* *
8140676 AAAAACCCTAAATTTCTTAAATTTAACAAACATTAAACAAAATATTTCAACCAAAACCTTAATGA
1 AAAAACCCTAAATTTCTTAAATTTAACAAACACTAAACAAAAGATTTCAACC-AAACCTTAATGA
8140741 AATGGAAGTGAGAAT
65 AATGGAAGTGAGAAT
8140756 CGCATATACC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
85 46 0.64
87 26 0.36
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.27
Consensus pattern (86 bp):
AAAAACCCTAAATTTCTTAAATTTAACAAACACTAAACAAAAGATTTCAACCAAACCTTAATGAA
ATGGAAGTGAGAATTGCACAT
Found at i:8141577 original size:17 final size:17
Alignment explanation
Indices: 8141555--8141588 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8141545 GATTAAGACC
8141555 CTACCCAATTAAATTAA
1 CTACCCAATTAAATTAA
8141572 CTACCCAATTAAATTAA
1 CTACCCAATTAAATTAA
8141589 TAAATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (17 bp):
CTACCCAATTAAATTAA
Found at i:8142400 original size:19 final size:19
Alignment explanation
Indices: 8142376--8142414 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8142366 AAAAAAATTG
*
8142376 ATATTTCAATTTTTTCTCA
1 ATATTTCAATTTTTCCTCA
8142395 ATATTTCAATTTTTCCTCA
1 ATATTTCAATTTTTCCTCA
8142414 A
1 A
8142415 AAATCTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.18, G:0.00, T:0.54
Consensus pattern (19 bp):
ATATTTCAATTTTTCCTCA
Found at i:8143813 original size:16 final size:15
Alignment explanation
Indices: 8143793--8143839 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
8143783 AATAATAAGA
8143793 TAAATTAAAAATAAT
1 TAAATTAAAAATAAT
*
8143808 TGAAATTAAAGATAAT
1 T-AAATTAAAAATAAT
8143824 TAATAGTTAAAAATAA
1 TAA-A-TTAAAAATAA
8143840 CAAATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 3 0.11
16 15 0.56
17 9 0.33
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
TAAATTAAAAATAAT
Found at i:8143861 original size:12 final size:12
Alignment explanation
Indices: 8143844--8143870 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8143834 AAATAACAAA
8143844 TTTTTTCCTTTT
1 TTTTTTCCTTTT
8143856 TTTTTTCCTTTT
1 TTTTTTCCTTTT
8143868 TTT
1 TTT
8143871 AAACAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTCCTTTT
Found at i:8143932 original size:2 final size:2
Alignment explanation
Indices: 8143925--8143951 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8143915 TTGGATAGTA
8143925 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8143952 CAGACAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8144260 original size:21 final size:21
Alignment explanation
Indices: 8144236--8144275 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8144226 GTCAAATGTC
8144236 ATAAATTTATATAAAAAAAAT
1 ATAAATTTATATAAAAAAAAT
* *
8144257 ATAAATTTTTTTAAAAAAA
1 ATAAATTTATATAAAAAAA
8144276 TTTTCAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAAATTTATATAAAAAAAAT
Found at i:8144499 original size:9 final size:9
Alignment explanation
Indices: 8144456--8144559 Score: 64
Period size: 9 Copynumber: 10.8 Consensus size: 9
8144446 TTTGGCATTA
*
8144456 TTTTAGAAT
1 TTTTAAAAT
*
8144465 TTTTAGAAT
1 TTTTAAAAT
8144474 TTTTGAAAAAT
1 TTTT--AAAAT
**
8144485 AGTTAAAAT
1 TTTTAAAAT
8144494 TTTTAAAAAT
1 TTTT-AAAAT
**
8144504 TGTTTAGGAT
1 T-TTTAAAAT
*
8144514 TTTTAAAAAAAA
1 TTTT---AAAAT
*
8144526 TTTTAATAT
1 TTTTAAAAT
*
8144535 TTTTAATAT
1 TTTTAAAAT
8144544 TTTTAAAAT
1 TTTTAAAAT
8144553 TTTTAAA
1 TTTTAAA
8144560 GAAATTTTGA
Statistics
Matches: 75, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
9 50 0.67
10 10 0.13
11 9 0.12
12 6 0.08
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:8144501 original size:19 final size:20
Alignment explanation
Indices: 8144466--8144559 Score: 68
Period size: 20 Copynumber: 4.8 Consensus size: 20
8144456 TTTTAGAATT
*
8144466 TTTAGAATTTTTGAAAAATAG
1 TTTAAAATTTTT-AAAAATAG
*
8144487 -TTAAAATTTTTAAAAATTG
1 TTTAAAATTTTTAAAAATAG
** * *
8144506 TTTAGGATTTTTAAAAAAAAT
1 TTTAAAATTTTT-AAAAATAG
* * *
8144527 TTTAATATTTTT-AATAT-T
1 TTTAAAATTTTTAAAAATAG
8144545 TTTAAAATTTTTAAA
1 TTTAAAATTTTTAAA
8144560 GAAATTTTGA
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
18 12 0.21
19 12 0.21
20 19 0.33
21 15 0.26
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (20 bp):
TTTAAAATTTTTAAAAATAG
Found at i:8144515 original size:20 final size:20
Alignment explanation
Indices: 8144437--8144522 Score: 77
Period size: 20 Copynumber: 4.3 Consensus size: 20
8144427 TTTAACTTTG
* *
8144437 TAAAAATTGTTTGGCATTATT
1 TAAAAATTGTTTAGAATT-TT
* *
8144458 TTAGAATT-TTTAGAATTTT
1 TAAAAATTGTTTAGAATTTT
* *
8144477 TGAAAAATAG-TTAAAATTTT
1 T-AAAAATTGTTTAGAATTTT
*
8144497 TAAAAATTGTTTAGGATTTT
1 TAAAAATTGTTTAGAATTTT
8144517 TAAAAA
1 TAAAAA
8144523 AAATTTTAAT
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
19 10 0.20
20 35 0.69
21 6 0.12
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.47
Consensus pattern (20 bp):
TAAAAATTGTTTAGAATTTT
Found at i:8144537 original size:41 final size:39
Alignment explanation
Indices: 8144462--8144559 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 39
8144452 ATTATTTTAG
* *
8144462 AATTTTTAGAATTTTTGAAAAATAGTTAAAATTTTTAAA
1 AATTTTTAGAATTTTTAAAAAAAAGTTAAAATTTTTAAA
* * *
8144501 AATTGTTTAGGATTTTTAAAAAAAATTTTAATATTTTT-AA
1 AATT-TTTAGAATTTTTAAAAAAAA-GTTAAAATTTTTAAA
* *
8144541 TATTTTTAAAATTTTTAAA
1 AATTTTTAGAATTTTTAAA
8144560 GAAATTTTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 17 0.35
40 22 0.45
41 10 0.20
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (39 bp):
AATTTTTAGAATTTTTAAAAAAAAGTTAAAATTTTTAAA
Found at i:8144621 original size:17 final size:16
Alignment explanation
Indices: 8144589--8144623 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
8144579 TTTTTATTTG
*
8144589 AATTTTTAATTTTTTT
1 AATTTTTAAATTTTTT
8144605 AATTTTATAAATTTTTT
1 AATTTT-TAAATTTTTT
8144622 AA
1 AA
8144624 AATTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
AATTTTTAAATTTTTT
Found at i:8144629 original size:18 final size:18
Alignment explanation
Indices: 8144596--8144630 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8144586 TTGAATTTTT
* *
8144596 AATTTTTTTAATTTTATA
1 AATTTTTTAAAATTTATA
8144614 AATTTTTTAAAATTTAT
1 AATTTTTTAAAATTTAT
8144631 TTTTGAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AATTTTTTAAAATTTATA
Found at i:8145199 original size:20 final size:20
Alignment explanation
Indices: 8145174--8145222 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
8145164 TATTTATTAT
*
8145174 ATAAAATTTTTTAATAAATA
1 ATAAAATTTCTTAATAAATA
8145194 ATAAAATTTCTTAATAAATA
1 ATAAAATTTCTTAATAAATA
*
8145214 ACAAAATTT
1 ATAAAATTT
8145223 ATTCAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (20 bp):
ATAAAATTTCTTAATAAATA
Found at i:8149556 original size:12 final size:12
Alignment explanation
Indices: 8149539--8149576 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
8149529 ACATAAAGAA
8149539 AACAAGATAAAC
1 AACAAGATAAAC
8149551 AACAAGATAAAC
1 AACAAGATAAAC
* *
8149563 AATATGATAAAC
1 AACAAGATAAAC
8149575 AA
1 AA
8149577 AAATAGCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.66, C:0.13, G:0.08, T:0.13
Consensus pattern (12 bp):
AACAAGATAAAC
Found at i:8152874 original size:85 final size:86
Alignment explanation
Indices: 8152775--8152939 Score: 287
Period size: 85 Copynumber: 1.9 Consensus size: 86
8152765 TTCAGAATAA
*
8152775 AAAAACTCTAAATTTCTTAAATTTAATAAACCCTAAACAGAAGATTTCAACC-AACCTTAATGAA
1 AAAAACCCTAAATTTCTTAAATTTAATAAACCCTAAACAGAAGATTTCAACCAAACCTTAATGAA
8152839 ATGAAAGTGAGAATTGCACAT
66 ATGAAAGTGAGAATTGCACAT
*
8152860 AAAAACCCTAAATTTCTTAAATTTAATAAACCCTAAATAGAAGATTTCAACCAAAACCTTAATGA
1 AAAAACCCTAAATTTCTTAAATTTAATAAACCCTAAACAGAAGATTTCAACC-AAACCTTAATGA
*
8152925 AATGGAAGTGAGAAT
65 AATGAAAGTGAGAAT
8152940 CACATATACT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
85 50 0.67
87 25 0.33
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.27
Consensus pattern (86 bp):
AAAAACCCTAAATTTCTTAAATTTAATAAACCCTAAACAGAAGATTTCAACCAAACCTTAATGAA
ATGAAAGTGAGAATTGCACAT
Found at i:8154984 original size:16 final size:17
Alignment explanation
Indices: 8154965--8155002 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
8154955 CTTATTCAAA
8154965 AAATAAATAAGTA-AAT
1 AAATAAATAAGTAGAAT
*
8154981 AAATAACTAAGTAGAAT
1 AAATAAATAAGTAGAAT
8154998 AAATA
1 AAATA
8155003 GAAAAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (17 bp):
AAATAAATAAGTAGAAT
Found at i:8155926 original size:16 final size:16
Alignment explanation
Indices: 8155907--8155937 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8155897 ACAATAAGAT
8155907 AAATTAAAAATAATTG
1 AAATTAAAAATAATTG
*
8155923 AAATTAAAGATAATT
1 AAATTAAAAATAATT
8155938 AATAGATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
AAATTAAAAATAATTG
Found at i:8156524 original size:33 final size:33
Alignment explanation
Indices: 8156415--8156575 Score: 148
Period size: 33 Copynumber: 4.9 Consensus size: 33
8156405 AAAAAATGTG
* * * * *
8156415 ATGACTTGGTTTTAGTCGAGGTCAAAAAATAAA
1 ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAA
* * *
8156448 ATGACTTGGTATTAGTTGAAA-TAAGAAAATAAA
1 ATGACTTGGTCTTAG-TCAAAGTTAGAAAATAAA
8156481 ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAA
1 ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAA
* * *
8156514 ATGACCTGGTCTT-GGCTGAAGTTA-AAAATTAAA
1 ATGACTTGGTCTTAGTC-AAAGTTAGAAAA-TAAA
* * *
8156547 ATGACTTAGTCTTAGCCAAAGTTGGAAAA
1 ATGACTTGGTCTTAGTCAAAGTTAGAAAA
8156576 AACTTATATA
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
32 10 0.10
33 87 0.83
34 8 0.08
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (33 bp):
ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAA
Found at i:8156547 original size:66 final size:66
Alignment explanation
Indices: 8156415--8156575 Score: 180
Period size: 66 Copynumber: 2.4 Consensus size: 66
8156405 AAAAAATGTG
* * * * * * *
8156415 ATGACTTGGTTTTAGTCGAGGTCAAAAAATAAAATGACTTGGTATTAGTTGAAATAAGAAAATAA
1 ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAAATGACCTGGTATTAGCTGAAATAAGAAAATAA
8156480 A
66 A
* * * *
8156481 ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAAATGACCTGGTCTTGGCTGAAGTTAA-AAATTA
1 ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAAATGACCTGGTATTAGCTGAA-ATAAGAAAATA
8156545 AA
65 AA
* * *
8156547 ATGACTTAGTCTTAGCCAAAGTTGGAAAA
1 ATGACTTGGTCTTAGTCAAAGTTAGAAAA
8156576 AACTTATATA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
66 77 0.96
67 3 0.04
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (66 bp):
ATGACTTGGTCTTAGTCAAAGTTAGAAAATAAAATGACCTGGTATTAGCTGAAATAAGAAAATAA
A
Found at i:8157775 original size:10 final size:10
Alignment explanation
Indices: 8157760--8157786 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8157750 TCATTCTTCA
8157760 TTTTTTCATT
1 TTTTTTCATT
8157770 TTTTTTCATT
1 TTTTTTCATT
8157780 TTTTTTC
1 TTTTTTC
8157787 TTTGCATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:8163132 original size:51 final size:51
Alignment explanation
Indices: 8163077--8163186 Score: 150
Period size: 51 Copynumber: 2.2 Consensus size: 51
8163067 AAAATCGATC
8163077 TTTCAACTTTTCCTTAAATCC-TTAAAAATATTTAAATAGGAAAAATTGAGA
1 TTTCAACTTTTCCTTAAATCCTTTAAAAATATTTAAA-AGGAAAAATTGAGA
* * * * * *
8163128 TTTCAACTTTTTCTTAAATCCTTTGAAATTATTTCAAAGGAAAATTTGATA
1 TTTCAACTTTTCCTTAAATCCTTTAAAAATATTTAAAAGGAAAAATTGAGA
8163179 TTTCAACT
1 TTTCAACT
8163187 CATTCCTTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 40 0.77
52 12 0.23
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (51 bp):
TTTCAACTTTTCCTTAAATCCTTTAAAAATATTTAAAAGGAAAAATTGAGA
Found at i:8164428 original size:23 final size:22
Alignment explanation
Indices: 8164388--8164443 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
8164378 GCCAACCATC
*
8164388 TATTTTTTTTTTCATTTTTTGT
1 TATTTTGTTTTTCATTTTTTGT
8164410 TATTTTGTTTTTCATTTTTTGT
1 TATTTTGTTTTTCATTTTTTGT
8164432 TATTTTTGTTTT
1 TA-TTTTGTTTT
8164444 GAAATAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 23 0.72
23 9 0.28
ACGTcount: A:0.09, C:0.04, G:0.07, T:0.80
Consensus pattern (22 bp):
TATTTTGTTTTTCATTTTTTGT
Found at i:8173188 original size:39 final size:39
Alignment explanation
Indices: 8173128--8173206 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
8173118 TGGTGTCCTT
* * *
8173128 AGAAGTTATTTAAATTAATCTTGCTCGAATTTATTTTGG
1 AGAAGTTATTTAAACTAATCTTACTAGAATTTATTTTGG
* *
8173167 AGAAGTTATTTAAACTCATCTTATTAGAATTTATTTTGG
1 AGAAGTTATTTAAACTAATCTTACTAGAATTTATTTTGG
8173206 A
1 A
8173207 AGAAATGACT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.46
Consensus pattern (39 bp):
AGAAGTTATTTAAACTAATCTTACTAGAATTTATTTTGG
Found at i:8175968 original size:21 final size:23
Alignment explanation
Indices: 8175943--8175998 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 23
8175933 CTTTTTTTTT
* *
8175943 ATTTATTAGATATTAA-TAA-TA
1 ATTTATTAAAAATTAACTAATTA
8175964 ATTTATTAAAAATTAACTAATTA
1 ATTTATTAAAAATTAACTAATTA
*
8175987 ATTT-TAAAAAAT
1 ATTTATTAAAAAT
8175999 AAAACAAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.47
22 10 0.33
23 6 0.20
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTTATTAAAAATTAACTAATTA
Found at i:8176859 original size:18 final size:19
Alignment explanation
Indices: 8176826--8176861 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8176816 ACTCTGGCAA
8176826 AGCCAAAGAAATTTTTTTG
1 AGCCAAAGAAATTTTTTTG
*
8176845 AGCCAAAG-GATTTTTTT
1 AGCCAAAGAAATTTTTTT
8176862 CTGGTGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (19 bp):
AGCCAAAGAAATTTTTTTG
Found at i:8177160 original size:11 final size:11
Alignment explanation
Indices: 8177136--8177180 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
8177126 TTCAGGTGAA
8177136 TTTTT-TTA-T
1 TTTTTATTATT
8177145 TTTTTATTATT
1 TTTTTATTATT
*
8177156 TTTTTAAATATT
1 TTTTT-ATTATT
8177168 TTTTTATTATT
1 TTTTTATTATT
8177179 TT
1 TT
8177181 AAATTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 5 0.16
10 3 0.10
11 13 0.42
12 10 0.32
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTATTATT
Found at i:8177169 original size:20 final size:18
Alignment explanation
Indices: 8177146--8177194 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
8177136 TTTTTTTATT
*
8177146 TTTTATTATTTTTTTAAATA
1 TTTTATTATTATTTT-AA-A
*
8177166 TTTTTTTATTATTTTAAA
1 TTTTATTATTATTTTAAA
8177184 TTTTATTATTA
1 TTTTATTATTA
8177195 ATATTTATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 11 0.42
19 2 0.08
20 13 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATTATTATTTTAAA
Found at i:8177190 original size:23 final size:24
Alignment explanation
Indices: 8177139--8177199 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 24
8177129 AGGTGAATTT
*
8177139 TTTTATTTTTTATTATTTTTTTAAA
1 TTTTA-TTTTTATTATTATTTTAAA
8177164 ---TATTTTT-TTATTATTTTAAA
1 TTTTATTTTTATTATTATTTTAAA
* *
8177184 TTTTATTATTAATATT
1 TTTTATTTTTATTATT
8177200 TATGCATGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
20 12 0.41
21 5 0.17
22 2 0.07
23 6 0.21
24 4 0.14
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTATTTTTATTATTATTTTAAA
Found at i:8178966 original size:17 final size:15
Alignment explanation
Indices: 8178946--8178996 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
8178936 TGTGTGTAAG
*
8178946 AAAAAAAATACAAACA
1 AAAAAAAAAACAAA-A
8178962 AAAAACAAAAACAAAA
1 AAAAA-AAAAACAAAA
*
8178978 ACAAAACAAAACAAAA
1 A-AAAAAAAAACAAAA
8178994 AAA
1 AAA
8178997 TCTCAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 2 0.06
16 17 0.55
17 12 0.39
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.02
Consensus pattern (15 bp):
AAAAAAAAAACAAAA
Found at i:8178969 original size:11 final size:10
Alignment explanation
Indices: 8178946--8178996 Score: 57
Period size: 12 Copynumber: 4.7 Consensus size: 10
8178936 TGTGTGTAAG
8178946 AAAAAAAATAC
1 AAAAAAAA-AC
8178957 AAACAAAAAAC
1 AAA-AAAAAAC
8178968 AAAAACAAAAAC
1 -AAAA-AAAAAC
*
8178980 AAAACAAAAC
1 AAAAAAAAAC
8178990 AAAAAAA
1 AAAAAAA
8178997 TCTCAAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
10 11 0.31
11 10 0.29
12 14 0.40
ACGTcount: A:0.84, C:0.14, G:0.00, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:8178973 original size:6 final size:6
Alignment explanation
Indices: 8178957--8178994 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
8178947 AAAAAAATAC
8178957 AAACAAA AAACAA AAACAA AAAC-A AAAC-A AAACAA AAA
1 AAAC-AA AAACAA AAACAA AAACAA AAACAA AAACAA AAA
8178995 AATCTCAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 10 0.33
6 16 0.53
7 4 0.13
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:8182610 original size:15 final size:15
Alignment explanation
Indices: 8182573--8182602 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8182563 ATGAAATCGT
8182573 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
8182588 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
8182603 TGAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAA
Found at i:8183535 original size:35 final size:34
Alignment explanation
Indices: 8183496--8183585 Score: 117
Period size: 35 Copynumber: 2.6 Consensus size: 34
8183486 AGTATTTTTG
* * *
8183496 GAAAATACATTTACATTTCATGTGCATCTTTTTAA
1 GAAAAGACATTTACATTTCATGAGCATC-ATTTAA
* *
8183531 GAAAAGACATTTGCATCTCATGAGCATCATTTAA
1 GAAAAGACATTTACATTTCATGAGCATCATTTAA
*
8183565 TAAAAGACATTTACATTTCAT
1 GAAAAGACATTTACATTTCAT
8183586 TTGTCGAACT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 23 0.49
35 24 0.51
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37
Consensus pattern (34 bp):
GAAAAGACATTTACATTTCATGAGCATCATTTAA
Found at i:8183885 original size:21 final size:23
Alignment explanation
Indices: 8183854--8183915 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 23
8183844 GTTGTTTTTT
* * *
8183854 TAATTTATTTATTAGATATTAA-
1 TAATTAATTTATTAAAAATTAAC
8183876 TAA-TAATTTATTAAAAATTAAC
1 TAATTAATTTATTAAAAATTAAC
*
8183898 TAATTAATTTTTTAAAAA
1 TAATTAATTTATTAAAAA
8183916 AATAAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 15 0.44
22 6 0.18
23 13 0.38
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TAATTAATTTATTAAAAATTAAC
Found at i:8186528 original size:86 final size:85
Alignment explanation
Indices: 8186371--8186572 Score: 228
Period size: 86 Copynumber: 2.4 Consensus size: 85
8186361 ACATTTGGAT
* * *
8186371 CACTTGCATGTGCATCATGAGAAAGACATTTGATCAATGCACTATAAAAACAAAATAAACATTCA
1 CACTGGCATGTACATCATGAGAAAGACATTTGATC-ATGCACTACAAAAACAAAATAAACATTCA
* *
8186436 CATTTGCATCACTTGCATTTG
65 CATTTGCATCACATGCATTCG
* * * *
8186457 CACTGGCATTTACATCATGAGAAAGACATTTTATC-TGCATGCTGCAAAAACAAAA-AAGATATT
1 CACTGGCATGTACATCATGAGAAAGACATTTGATCATGCA--CTACAAAAACAAAATAA-ACATT
*
8186520 CACATTTGCATCACATGTATTCG
63 CACATTTGCATCACATGCATTCG
* * * *
8186543 TACTTGTATGTACATCATGAAAAAGACATT
1 CACTGGCATGTACATCATGAGAAAGACATT
8186573 CACATTCATA
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
84 4 0.04
85 2 0.02
86 92 0.94
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (85 bp):
CACTGGCATGTACATCATGAGAAAGACATTTGATCATGCACTACAAAAACAAAATAAACATTCAC
ATTTGCATCACATGCATTCG
Found at i:8189469 original size:17 final size:18
Alignment explanation
Indices: 8189438--8189471 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8189428 ACTTAGAAAC
8189438 TTTTTCTTATCTTTCTTG
1 TTTTTCTTATCTTTCTTG
*
8189456 TTTTTTTTAT-TTTCTT
1 TTTTTCTTATCTTTCTT
8189472 TTATCTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTTCTTATCTTTCTTG
Found at i:8189802 original size:30 final size:30
Alignment explanation
Indices: 8189734--8189792 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
8189724 CAAACCCCAT
* *
8189734 CAAAAACTTGATCAGAATATTTAATCTCAC
1 CAAAAACTTGATCAGAAAATTCAATCTCAC
8189764 CAAAAACTTGATCA-AAAACTTCAATCTCA
1 CAAAAACTTGATCAGAAAA-TTCAATCTCA
8189793 TTCAAAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAAAACTTGATCAGAAAATTCAATCTCAC
Found at i:8189817 original size:18 final size:19
Alignment explanation
Indices: 8189776--8189823 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
8189766 AAAACTTGAT
* *
8189776 CAAAAACTTCAATCTCATT
1 CAAAAACTTCAAACTCATC
8189795 C-AAAACTTCAAACT-ATC
1 CAAAAACTTCAAACTCATC
*
8189812 CAAAAAATTCAA
1 CAAAAACTTCAA
8189824 CTTAAAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 3 0.12
18 21 0.84
19 1 0.04
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (19 bp):
CAAAAACTTCAAACTCATC
Found at i:8189838 original size:31 final size:31
Alignment explanation
Indices: 8189803--8189861 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
8189793 TTCAAAACTT
*
8189803 CAAACTAT-CCAAAAAATTCAACTTAAAAAAC
1 CAAACT-TGCCAAAAAATTCAACTGAAAAAAC
* *
8189834 CAAACTTGCTAGAAAATTCAACTGAAAA
1 CAAACTTGCCAAAAAATTCAACTGAAAA
8189862 GTTCAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 23 0.96
ACGTcount: A:0.54, C:0.20, G:0.05, T:0.20
Consensus pattern (31 bp):
CAAACTTGCCAAAAAATTCAACTGAAAAAAC
Found at i:8189877 original size:31 final size:31
Alignment explanation
Indices: 8189815--8189880 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
8189805 AACTATCCAA
* * *
8189815 AAAATTCAACTTAAAAAACCAAACTTGCTAG
1 AAAATTCAACTGAAAAAACCAAAATTCCTAG
***
8189846 AAAATTCAACTGAAAAGTTCAAAATTCCTAG
1 AAAATTCAACTGAAAAAACCAAAATTCCTAG
8189877 AAAA
1 AAAA
8189881 ACCTAGATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.53, C:0.17, G:0.08, T:0.23
Consensus pattern (31 bp):
AAAATTCAACTGAAAAAACCAAAATTCCTAG
Found at i:8197131 original size:15 final size:15
Alignment explanation
Indices: 8197111--8197141 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8197101 ATTTTATTTG
*
8197111 AGACATATGCACAAT
1 AGACATATGCAAAAT
8197126 AGACATATGCAAAAT
1 AGACATATGCAAAAT
8197141 A
1 A
8197142 ATATAATCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.16, G:0.13, T:0.19
Consensus pattern (15 bp):
AGACATATGCAAAAT
Found at i:8198113 original size:21 final size:21
Alignment explanation
Indices: 8198076--8198121 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8198066 TTTTTTAATT
*
8198076 TAAACAGTTTTTCTTAATAAA
1 TAAACAGTTTTTCTTAAGAAA
*
8198097 TAAA-AGTTTGTTTTTAAGAAA
1 TAAACAGTTT-TTCTTAAGAAA
8198118 TAAA
1 TAAA
8198122 TATATTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (21 bp):
TAAACAGTTTTTCTTAAGAAA
Found at i:8204827 original size:125 final size:133
Alignment explanation
Indices: 8204661--8204968 Score: 343
Period size: 132 Copynumber: 2.4 Consensus size: 133
8204651 CAGAATCCTA
* * * *
8204661 AGAATTCAAGAAAGTAGATTGCTAAAGATGAAA-TCAAATGTTTCAAAAAAAAAGAG-CAA-AG-
1 AGAATTCAAGAAAGTTGATTGCTAAAGAT-AAAGTTAAATGTTTCAAAAAAAAAAAGAAAAGAGT
** * ** * *
8204722 AAAG-AA-AAA-A-ATGCACCTCGGAGATGAGAG-CCTAGGGTAAAAAGTGAATAAAGCTTCAAG
65 AAAGAAAGAAAGACATGCACCTCAAAAACAAAAGTCC-AAGGTAAAAAGTGAATAAAGCTTCAAG
8204782 -AAAT
129 AAAAT
*
8204786 AGAATTTAAGAAAGTTGATTGCTAAAGATAAAGTTAAATG-TTCAAAAAAGAAAAAGAAAAGAGT
1 AGAATTCAAGAAAGTTGATTGCTAAAGATAAAGTTAAATGTTTCAAAAAA-AAAAAGAAAAGAGT
* *
8204850 AAAGAAAGAAAGACATGCACCTCAAAAACAAAAGTCCAAGGTAAAAAGTGAATGAAGCTTCAGGA
65 AAAGAAAGAAAGACATGCACCTCAAAAACAAAAGTCCAAGGTAAAAAGTGAATAAAGCTTCAAGA
8204915 AAAT
130 AAAT
* * * *
8204919 AAAATTCAAG-AAGTTTATTGCTAAATATAAAGTTAAATGTTCCAAAAAAA
1 AGAATTCAAGAAAGTTGATTGCTAAAGATAAAGTTAAATGTTTCAAAAAAA
8204969 TCAAAAACCA
Statistics
Matches: 152, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
124 12 0.08
125 38 0.25
126 2 0.01
127 2 0.01
128 4 0.03
129 2 0.01
130 3 0.02
131 1 0.01
132 66 0.43
133 22 0.14
ACGTcount: A:0.53, C:0.09, G:0.18, T:0.20
Consensus pattern (133 bp):
AGAATTCAAGAAAGTTGATTGCTAAAGATAAAGTTAAATGTTTCAAAAAAAAAAAGAAAAGAGTA
AAGAAAGAAAGACATGCACCTCAAAAACAAAAGTCCAAGGTAAAAAGTGAATAAAGCTTCAAGAA
AAT
Done.