Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 47 of 121
Found at i:8209000 original size:12 final size:13
Alignment explanation
Indices: 8208977--8209019 Score: 52
Period size: 12 Copynumber: 3.2 Consensus size: 13
8208967 AGATTAAAAC
8208977 ATAAATAAAATGA
1 ATAAATAAAATGA
*
8208990 ATAAA-AAAATGT
1 ATAAATAAAATGA
8209002 ATAACATAATAATGA
1 ATAA-ATAA-AATGA
8209017 ATA
1 ATA
8209020 TATATTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 10 0.40
13 6 0.24
14 2 0.08
15 7 0.28
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (13 bp):
ATAAATAAAATGA
Found at i:8210118 original size:10 final size:10
Alignment explanation
Indices: 8210103--8210129 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8210093 AAAATTATCT
8210103 TTTTAATAAA
1 TTTTAATAAA
8210113 TTTTAATAAA
1 TTTTAATAAA
8210123 TTTTAAT
1 TTTTAAT
8210130 TTTTTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:8211243 original size:17 final size:17
Alignment explanation
Indices: 8211218--8211252 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8211208 CTTTCCCTAG
*
8211218 CTTAGAATTTCATGAAA
1 CTTAAAATTTCATGAAA
8211235 CTTAAAATTTCATGAAA
1 CTTAAAATTTCATGAAA
8211252 C
1 C
8211253 CTTTCAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (17 bp):
CTTAAAATTTCATGAAA
Found at i:8211692 original size:19 final size:17
Alignment explanation
Indices: 8211651--8211702 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
8211641 AAGAATCAGG
*
8211651 AAAAAAAAAAGAAGAGT
1 AAAAAAAAAAGAAAAGT
8211668 ACAAAAAAAGAAGAAAAGCT
1 A-AAAAAAA-AAGAAAAG-T
8211688 AAAAATAAAAA-AAAA
1 AAAAA-AAAAAGAAAA
8211703 ATTCAAGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 1 0.03
18 11 0.37
19 13 0.43
20 5 0.17
ACGTcount: A:0.79, C:0.04, G:0.12, T:0.06
Consensus pattern (17 bp):
AAAAAAAAAAGAAAAGT
Found at i:8218389 original size:21 final size:21
Alignment explanation
Indices: 8218365--8218404 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8218355 CAAATATTCC
*
8218365 AAAAAAGAGAGAGAGAAAAGA
1 AAAAAAGAGAAAGAGAAAAGA
* *
8218386 AAAAGAGAGAAATAGAAAA
1 AAAAAAGAGAAAGAGAAAA
8218405 TTAGTTATGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (21 bp):
AAAAAAGAGAAAGAGAAAAGA
Found at i:8218392 original size:15 final size:16
Alignment explanation
Indices: 8218374--8218404 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8218364 CAAAAAAGAG
8218374 AGAGAGAAA-AGAAAA
1 AGAGAGAAATAGAAAA
8218389 AGAGAGAAATAGAAAA
1 AGAGAGAAATAGAAAA
8218405 TTAGTTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (16 bp):
AGAGAGAAATAGAAAA
Found at i:8220688 original size:98 final size:98
Alignment explanation
Indices: 8220541--8220723 Score: 262
Period size: 98 Copynumber: 1.9 Consensus size: 98
8220531 CCACCAAAGA
*
8220541 AATGTTAACCCCAATTTAGCTAGCCTTCAAAAAAATATTAAGCCCAGATTAATTGGCCCCTAA-T
1 AATGTTAACCCCAATTTAGCTAGCCTTCAAAAAAATATTAAGCCCAGATTAACTGGCCCC-AAGT
*
8220605 GAAATATTAACCCTAGATTAGCTAGTTTCCCATG
65 GAAATATTAACCCGAGATTAGCTAGTTTCCCATG
* * * * *
8220639 AATG-TAAGCCCAGTTTAGCTAGCCTTCAAGAAATATATTAAGCCTAGATTAGCTGGCCCCAAGT
1 AATGTTAACCCCAATTTAGCTAGCCTTCAA-AAAAATATTAAGCCCAGATTAACTGGCCCCAAGT
*
8220703 GAAATATTAAGCCGAGATTAG
65 GAAATATTAACCCGAGATTAG
8220724 TTGGCCTTCA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
97 25 0.33
98 50 0.67
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (98 bp):
AATGTTAACCCCAATTTAGCTAGCCTTCAAAAAAATATTAAGCCCAGATTAACTGGCCCCAAGTG
AAATATTAACCCGAGATTAGCTAGTTTCCCATG
Found at i:8220715 original size:33 final size:33
Alignment explanation
Indices: 8220512--8220823 Score: 171
Period size: 33 Copynumber: 9.6 Consensus size: 33
8220502 GATACAAGAT
* * * *
8220512 TTAAGCCTAGATTAGCTGGCCACCAAAGAAATG
1 TTAAGCCCAGATTAGCTGGCCTCCAATGAAATA
* * * **
8220545 TTAACCCCA-ATTTAGCTAGCCTTCAAAAAAATA
1 TTAAGCCCAGA-TTAGCTGGCCTCCAATGAAATA
**
8220578 TTAAGCCCAGATTAATTGGCC-CCTAATGAAATA
1 TTAAGCCCAGATTAGCTGGCCTCC-AATGAAATA
* ** *
8220611 TTAA-CCCTAGATTAGCTAGTTTCCCATG-AAT-
1 TTAAGCCC-AGATTAGCTGGCCTCCAATGAAATA
* * * *
8220642 GTAAGCCCAGTTTAGCTAGCCTTCAA-GAAATATA
1 TTAAGCCCAGATTAGCTGGCCTCCAATG-AA-ATA
*
8220676 TTAAGCCTAGATTAGCTGGCC-CCAAGTGAAATA
1 TTAAGCCCAGATTAGCTGGCCTCCAA-TGAAATA
* * * *
8220709 TTAAGCCGAGATTAGTTGGCCTTCAAAGAAGAT-
1 TTAAGCCCAGATTAGCTGGCCTCCAATGAA-ATA
* * *
8220742 TTAAGCCCATA-TAGCTAGCCTCCAATG-AATG
1 TTAAGCCCAGATTAGCTGGCCTCCAATGAAATA
* * * **
8220773 CTATGCCCA-ATTTAGCTGGCCT-TAAAAAAATA
1 TTAAGCCCAGA-TTAGCTGGCCTCCAATGAAATA
*
8220805 TTAAGCCCAGATTGGCTGG
1 TTAAGCCCAGATTAGCTGG
8220824 TCCCCTTGAT
Statistics
Matches: 209, Mismatches: 51, Indels: 39
0.70 0.17 0.13
Matches are distributed among these distances:
30 4 0.02
31 26 0.12
32 50 0.24
33 101 0.48
34 27 0.13
35 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (33 bp):
TTAAGCCCAGATTAGCTGGCCTCCAATGAAATA
Found at i:8221528 original size:35 final size:34
Alignment explanation
Indices: 8221453--8222913 Score: 756
Period size: 34 Copynumber: 42.7 Consensus size: 34
8221443 AGTGGTCACA
* * *
8221453 TTTATTCTCTAACTCATGGTTTAATCCCGATC-TT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * **
8221487 CATTATTCTCTGACCCATGGTTCAATCCCGGTTGTT
1 -TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * * ***
8221523 TTTATTTTTTATCCATGGTTTAATCGTAGTCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * ** *
8221557 TTTATTTTCTGACCCATGATTTAATTCTAGTCATA
1 TTTA-TTTCTGACCCATGGTTTAATCCCGGTCATT
* * ** **
8221592 TTTATTCTTTGACTCATAATTTAATCCTAGTCATTT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCA-TT
* * * * *
8221628 TTTTTTTCTAAACCATGGTTTAATCCCGATC-TCC
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCAT-T
* * * * *
8221662 GTTATTCTCTTA-CCATGGTTCAATTCCAGTCATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * ***
8221696 TTTATTTTTGACCCGTGGTTTAATCCCAACCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * *** *
8221730 TTTATTCTTTGACCCATGG-TCAATTTTGGTCCTT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* **
8221764 TTTATTTCTGACCCATGGTTTAATCCCTGTTGTT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* *** * *
8221798 TTTATTCTCTGGCCCATGGTTTAATCTTAGTGATC
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * * **
8221833 TTTATTTTTTGACCTATGGTTTGATCTTGGTCATT
1 TTTA-TTTCTGACCCATGGTTTAATCCCGGTCATT
* * * ***
8221868 TTTATTCTCTGACCTATAGTTCAATCCTAATCATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * * *** * * *
8221903 TTTATTTTTGACTCATGGTATAATTATGATTATC
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* *
8221937 ATTATTCTCTGACCCATGGTTTAATCCTGGTCATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * *
8221972 TTTATTTCTGACTCATGATTTAATCTCGGTCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* *
8222006 TTT-TTT-T-A-CCATGATTTAATCTCGGTCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* **
8222036 TTTATTCTCTGACCCATGGTTTAATCCTGGTTGTT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * *
8222071 TTTATTTCTAACTCATGGTTTAATCCCGGTCGTT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * * *
8222105 TCTATTTTTGACTCATGGTTTAAT-TCGAGTAATT
1 TTTATTTCTGACCCATGGTTTAATCCCG-GTCATT
** * ** *
8222139 TTTATTTCTGACTTATGGTCTAATCTTGGTCGTT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * * * *
8222173 TTTATTTCTGTCTCATGATTTAAT-CTGATCGTT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* *
8222206 TTTATTTCTGACCTATGGTTTAATCCCGATCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * * *
8222240 TTTATTTTTGACTCATGGTTTAATCTCAGTCGTT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * *
8222274 TTTATTTTTAACCCATGGTTTAATCCTGATCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * * **
8222308 TTTATTTTTAACTCATGATTTAA-CCTCAATCATT
1 TTTATTTCTGACCCATGGTTTAATCC-CGGTCATT
* * * *** *
8222342 TTTATTTTTGACTCATAGTTTAATTTTGATCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * *
8222376 TTTATTTCTAACTCATAGTTTAATCCTGGTCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * * *
8222410 TTTATTTTTGACTCATTGTTTTATCCCGGTCATC
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * * **
8222444 GTTATTCTTTGACTCATGGTTCAATCCTAGTCATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * ** ** *
8222479 TTTATTTCTAACTCATAATTTAATCTTGATCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * *
8222513 TTTATTT-TGAACTCATGGTTTAATCCCGATCATC
1 TTTATTTCTG-ACCCATGGTTTAATCCCGGTCATT
* * * * **
8222547 ATTATTCTCTGATCCA-AGTTCAATCCCAATCATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * **
8222581 TTTATTTCTGACTCATAGTTTAATCTTGGTCATT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * *
8222615 TTTATTT-TCGACTCATGATTTAATCCCGATCATTT
1 TTTATTTCT-GACCCATGGTTTAATCCCGGTCA-TT
* ***
8222650 TTTATTCTCTGACCCATGGTTCAATTTTGGTCATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* ** *
8222685 TTTATTTCTGACTCATGGTTTAATTTCGGTCATC
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * * *
8222719 ATTATTCTCTAACTCATGGTTCAATCCCAGTCA-T
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * * * * *
8222753 TTTATTTCTAACTCATAGTTTAATCTCGATCATG
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * ** *
8222787 CTTATTCTCTGACCCATGGTTCAATCTCTATTATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* * ** * **
8222822 TTTATTTCTAACCTATGGTTTAATCTTGATTGTT
1 TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
* * * *
8222856 TTTATTCTTTGACCCATGGTTCAATCCTGATCATT
1 TTTATT-TCTGACCCATGGTTTAATCCCGGTCATT
* *
8222891 TTTATTTTTGACTCATGGTTTAA
1 TTTATTTCTGACCCATGGTTTAA
8222914 CTCCAGTCAT
Statistics
Matches: 1109, Mismatches: 280, Indels: 75
0.76 0.19 0.05
Matches are distributed among these distances:
30 24 0.02
31 3 0.00
32 2 0.00
33 80 0.07
34 610 0.55
35 360 0.32
36 29 0.03
37 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (34 bp):
TTTATTTCTGACCCATGGTTTAATCCCGGTCATT
Found at i:8222178 original size:102 final size:103
Alignment explanation
Indices: 8221535--8222913 Score: 951
Period size: 102 Copynumber: 13.4 Consensus size: 103
8221525 TATTTTTTAT
* * * * * * *
8221535 CCATGGTTTAATCGTAGTCATTTTTATTTTCTGACCCATGATTTAATTCTAGTCATATTTATTCT
1 CCATGGTTTAATCTTGGTCATTTTTA-TTTCTGACTCATGGTTTAATCCTGGTCATTTTTATT-T
** * * * * *
8221600 TTGACTCATAATTTAATC-CTAGTCATTTTTTTTTTCTAAA
64 TTGACTCATGGTTTAATCTCGA-TCATTTTTATTCTCTGAC
** * ** * * *
8221640 CCATGGTTTAATCCCGATC-TCCGTTATTCTCTTAC-CATGGTTCAATTCC-AGTCATTTTTATT
1 CCATGGTTTAATCTTGGTCAT-TTTTATT-TCTGACTCATGGTTTAA-TCCTGGTCATTTTTATT
* * * * * *
8221702 TTTGACCCGTGGTTTAATCCCAACCATTTTTATTCTTTGAC
63 TTTGACTCATGGTTTAATCTCGATCATTTTTATTCTCTGAC
* * * * **
8221743 CCATGG-TCAATTTTGGTCCTTTTTATTTCTGACCCATGGTTTAATCCCT-GTTGTTTTTATTCT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAAT-CCTGGTCATTTTTATT-T
* * * * * * * *
8221806 CTGGCCCATGGTTTAATCT-TAGTGATCTTTATTTTTTGAC
64 TTGACTCATGGTTTAATCTCGA-TCATTTTTATTCTCTGAC
* * * * **
8221846 CTATGGTTTGATCTTGGTCATTTTTATTCTCTGAC-CTATAGTTCAATCCTAATCATTTTTATTT
1 CCATGGTTTAATCTTGGTCATTTTTATT-TCTGACTC-ATGGTTTAATCCTGGTCATTTTTATTT
* * * **
8221910 TTGACTCATGGTATAAT-TATGATTATCATTATTCTCTGAC
64 TTGACTCATGGTTTAATCT-CGATCATTTTTATTCTCTGAC
* *
8221950 CCATGGTTTAATCCTGGTCATTTTTATTTCTGACTCATGATTTAAT-CTCGGTCA-TTTT-TTTT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCT-GGTCATTTTTATTTT
* *
8222012 T-AC-CATGATTTAATCTCGGTCATTTTTATTCTCTGAC
65 TGACTCATGGTTTAATCTCGATCATTTTTATTCTCTGAC
* ** * * * *
8222049 CCATGGTTTAATCCTGGTTGTTTTTATTTCTAACTCATGGTTTAATCCCGGTCGTTTCTATTTTT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTTT
*
8222114 GACTCATGGTTTAAT-TCGAGTAATTTTTATT-TCTGAC
66 GACTCATGGTTTAATCTCGA-TCATTTTTATTCTCTGAC
** * * * * * * *
8222151 TTATGGTCTAATCTTGGTCGTTTTTATTTCTGTCTCATGATTTAAT-CTGATCGTTTTTATTTCT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTTT
* *
8222215 GAC-CTATGGTTTAATCCCGATCATTTTTATT-TTTGAC
66 GACTC-ATGGTTTAATCTCGATCATTTTTATTCTCTGAC
* ** * * * * *
8222252 TCATGGTTTAATCTCAGTCGTTTTTATTTTTAACCCATGGTTTAATCCTGATCATTTTTATTTTT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTTT
* * * * *
8222317 AACTCATGATTTAACCTCAATCATTTTTATT-TTTGAC
66 GACTCATGGTTTAATCTCGATCATTTTTATTCTCTGAC
* * * * * *
8222354 TCATAGTTTAATTTTGATCATTTTTATTTCTAACTCATAGTTTAATCCTGGTCATTTTTATTTTT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTTT
* * * * ** *
8222419 GACTCATTGTTTTATCCCGGTCATCGTTATTCTTTGAC
66 GACTCATGGTTTAATCTCGATCATTTTTATTCTCTGAC
* * * * * ** * *
8222457 TCATGGTTCAATCCTAGTCATTTTTATTTCTAACTCATAATTTAATCTTGATCATTTTTA-TTTT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTTT
* ** *
8222521 GAACTCATGGTTTAATCCCGATCATCATTATTCTCTGAT
66 G-ACTCATGGTTTAATCTCGATCATTTTTATTCTCTGAC
* * **** * * *
8222560 CCA-AGTTCAATCCCAATCATTTTTATTTCTGACTCATAGTTTAATCTTGGTCATTTTTATTTTC
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTTT
* *
8222624 GACTCATGATTTAATCCCGATCATTTTTTATTCTCTGAC
66 GACTCATGGTTTAATCTCGATCA-TTTTTATTCTCTGAC
* * * **
8222663 CCATGGTTCAATTTTGGTCATTTTTATTTCTGACTCATGGTTTAAT-TTCGGTCATCATTATTCT
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCT-GGTCATTTTTATT-T
* * * * *
8222727 CTAACTCATGGTTCAATC-CCAGTCA-TTTTATT-TCTAAC
64 TTGACTCATGGTTTAATCTCGA-TCATTTTTATTCTCTGAC
* * * * ** * * * *
8222765 TCATAGTTTAATCTCGATCATGCTTATTCTCTGACCCATGGTTCAATCTCT-ATTATTTTTATTT
1 CCATGGTTTAATCTTGGTCATTTTTATT-TCTGACTCATGGTTTAATC-CTGGTCATTTTTATTT
* * * ** *
8222829 CTAAC-CTATGGTTTAATCTTGATTGTTTTTATTCTTTGAC
64 TTGACTC-ATGGTTTAATCTCGATCATTTTTATTCTCTGAC
* * * *
8222869 CCATGGTTCAATCCTGATCATTTTTATTTTTGACTCATGGTTTAA
1 CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAA
8222914 CTCCAGTCAT
Statistics
Matches: 1018, Mismatches: 212, Indels: 90
0.77 0.16 0.07
Matches are distributed among these distances:
99 71 0.07
100 8 0.01
101 96 0.09
102 332 0.33
103 271 0.27
104 173 0.17
105 67 0.07
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.49
Consensus pattern (103 bp):
CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGGTTTAATCCTGGTCATTTTTATTTTT
GACTCATGGTTTAATCTCGATCATTTTTATTCTCTGAC
Found at i:8222233 original size:135 final size:133
Alignment explanation
Indices: 8221663--8222913 Score: 551
Period size: 137 Copynumber: 9.2 Consensus size: 133
8221653 CCGATCTCCG
* * * * * * * **
8221663 TTATTCTCTTACC-ATGGTTCAATTCCAGTCATTTTTATTTTTGACCCGTGGTTTAATC-CCAAC
1 TTATT-TCTGACCTATGGTTTAATCCCGGTCATTTTTATTTTTGACTCATGGTTTAATCTCGAGT
* * * * *
8221726 CATTTTTATTCTTTGACCCATGG-TCAATTTTGGTCCTTTTTATTTCTGACCCATGGTTTAATCC
65 CATTTTTA-T-TTT-A-CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGATTTAAT--
*
8221790 CTG-TTGTTT
124 CTGATCGTTT
* * *** * * * *
8221799 TTATTCTCTGGCCCATGGTTTAATCTTAGTGATCTTTATTTTTTGAC-CTATGGTTTGATCTTG-
1 TTATT-TCTGACCTATGGTTTAATCCCGGTCATTTTTA-TTTTTGACTC-ATGGTTTAATCTCGA
* * * ** * * *
8221862 GTCATTTTTATTCTCTGACCTATAGTTCAATCCTAATCATTTTTATTTTTGACTCATGGTATAAT
63 GTCATTTTTATT-T-T-ACC-ATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGATTTAA-
* ** **
8221927 TATGATTATCA
123 TCTGATCGTTT
* * * *
8221938 TTATTCTCTGACCCATGGTTTAATCCTGGTCATTTTTATTTCTGACTCATGATTTAATCTCG-GT
1 TTATT-TCTGACCTATGGTTTAATCCCGGTCATTTTTATTTTTGACTCATGGTTTAATCTCGAGT
* * * * *
8222002 CATTTTT-TTTTACCATGATTTAATCTCGGTCATTTTTATTCTCTGACCCATGGTTTAATCCTGG
65 CATTTTTATTTTACCATGGTTTAATCTTGGTCATTTTTATT-TCTGACTCATGATTTAAT-CTGA
*
8222066 TTGTTT
128 TCGTTT
* * *
8222072 TTATTTCT-AACTCATGGTTTAATCCCGGTCGTTTCTATTTTTGACTCATGGTTTAAT-TCGAGT
1 TTATTTCTGACCT-ATGGTTTAATCCCGGTCATTTTTATTTTTGACTCATGGTTTAATCTCGAGT
* * * * *
8222135 AATTTTTATTTCTGACTTATGGTCTAATCTTGGTCGTTTTTATTTCTGTCTCATGATTTAATCTG
65 CATTTTTATTT-T-AC-CATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGATTTAATCTG
8222200 ATCGTTT
127 ATCGTTT
*
8222207 TTATTTCTGACCTATGGTTTAATCCCGATCATTTTTATTTTTGACTCATGGTTTAATCTC-AGTC
1 TTATTTCTGACCTATGGTTTAATCCCGGTCATTTTTATTTTTGACTCATGGTTTAATCTCGAGTC
* * * * * * *
8222271 GTTTTTATTTTTAACCCATGGTTTAATCCTGATCATTTTTATTTTTAACTCATGATTTAACCTCA
66 ATTTTTA-TTTT-A-CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGATTTAATCT-G
*
8222336 ATCATTT
127 ATCGTTT
* * *** * * * *
8222343 TTATTTTTGA-CTCATAGTTTAATTTTGATCATTTTTATTTCTAACTCATAGTTTAATC-CTG-G
1 TTATTTCTGACCT-ATGGTTTAATCCCGGTCATTTTTATTTTTGACTCATGGTTTAATCTC-GAG
* * ** ** * * *
8222405 TCATTTTTATTTTTGACTCATTGTTTTATCCCGGTCATCGTTATTCTTTGACTCATGGTTCAATC
64 TCATTTTTA-TTTT-AC-CATGGTTTAATCTTGGTCATTTTTATT-TCTGACTCATGATTTAAT-
*
8222470 CT-AGTCATTT
124 CTGA-TCGTTT
* ** ** * *
8222480 TTATTTCT-AACTCATAATTTAATCTTGATCATTTTTA-TTTTGAACTCATGGTTTAATCCCGA-
1 TTATTTCTGACCT-ATGGTTTAATCCCGGTCATTTTTATTTTTG-ACTCATGGTTTAATCTCGAG
** * * ****
8222542 TCATCATTATTCTCTGATCCA-AGTTCAATCCCAATCATTTTTATTTCTGACTCAT-AGTTTAAT
64 TCATTTTTATT-T-T-A-CCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGA-TTTAAT
* *
8222605 CTTGGTCATTT
124 C-TGATCGTTT
* * * * * * *
8222616 TTATTT-TCGA-CTCATGATTTAATCCCGATCATTTTTTATTCTCTGACCCATGGTTCAATTTTG
1 TTATTTCT-GACCT-ATGGTTTAATCCCGGTCA-TTTTTATT-TTTGACTCATGGTTTAATCTCG
** * * *
8222679 -GTCATTTTTATTTCTGACTCATGGTTTAAT-TTCGGTCATCATTATTCTCTAACTCATGGTTCA
62 AGTCATTTTTATTT-T-AC-CATGGTTTAATCTT-GGTCATTTTTATT-TCTGACTCATGATTTA
** *
8222742 ATCCCAGTC-ATT
122 ATCTGA-TCGTTT
* * * * ** * * * *
8222754 TTATTTCT-AACTCATAGTTTAATCTCGATCATGCTTATTCTCTGACCCATGGTTCAATCTCTA-
1 TTATTTCTGACCT-ATGGTTTAATCCCGGTCATTTTTATT-TTTGACTCATGGTTTAATCTCGAG
* * ** * * * *
8222817 TTATTTTTATTTCTAACCTATGGTTTAATCTTGATTGTTTTTATTCTTTGACCCATGGTTCAATC
64 TCATTTTTATTT-T-ACC-ATGGTTTAATCTTGGTCATTTTTATT-TCTGACTCATGATTTAAT-
*
8222882 CTGATCATTT
124 CTGATCGTTT
*
8222892 TTATTTTTGA-CTCATGGTTTAA
1 TTATTTCTGACCT-ATGGTTTAA
8222914 CTCCAGTCAT
Statistics
Matches: 879, Mismatches: 175, Indels: 120
0.75 0.15 0.10
Matches are distributed among these distances:
132 5 0.01
133 70 0.08
134 30 0.03
135 114 0.13
136 182 0.21
137 231 0.26
138 156 0.18
139 90 0.10
140 1 0.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (133 bp):
TTATTTCTGACCTATGGTTTAATCCCGGTCATTTTTATTTTTGACTCATGGTTTAATCTCGAGTC
ATTTTTATTTTACCATGGTTTAATCTTGGTCATTTTTATTTCTGACTCATGATTTAATCTGATCG
TTT
Found at i:8222357 original size:17 final size:17
Alignment explanation
Indices: 8222337--8222426 Score: 67
Period size: 17 Copynumber: 5.3 Consensus size: 17
8222327 TTAACCTCAA
8222337 TCATTTTTATTTTTGAC
1 TCATTTTTATTTTTGAC
* *
8222354 TCATAGTTTAATTTTGA-
1 TCAT-TTTTATTTTTGAC
* *
8222371 TCATTTTTATTTCTAAC
1 TCATTTTTATTTTTGAC
* * ** *
8222388 TCATAGTTTAATCCTG-G
1 TCAT-TTTTATTTTTGAC
8222405 TCATTTTTATTTTTGAC
1 TCATTTTTATTTTTGAC
8222422 TCATT
1 TCATT
8222427 GTTTTATCCC
Statistics
Matches: 53, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
16 15 0.28
17 21 0.40
18 17 0.32
ACGTcount: A:0.22, C:0.13, G:0.08, T:0.57
Consensus pattern (17 bp):
TCATTTTTATTTTTGAC
Found at i:8222368 original size:18 final size:18
Alignment explanation
Indices: 8222342--8222399 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
8222332 CTCAATCATT
*
8222342 TTTATTTTTGACTCATAG
1 TTTAATTTTGACTCATAG
8222360 TTTAATTTTGA-TCAT--
1 TTTAATTTTGACTCATAG
* *
8222375 TTTTATTTCTAACTCATAG
1 TTTAATTT-TGACTCATAG
8222394 TTTAAT
1 TTTAAT
8222400 CCTGGTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
15 7 0.22
16 2 0.06
17 8 0.25
18 10 0.31
19 5 0.16
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.57
Consensus pattern (18 bp):
TTTAATTTTGACTCATAG
Found at i:8222827 original size:137 final size:138
Alignment explanation
Indices: 8221967--8222913 Score: 607
Period size: 137 Copynumber: 7.0 Consensus size: 138
8221957 TTAATCCTGG
* * * * *
8221967 TCATTTTTATTTCTGACTCATGATTTAATCTC-GGTCATTTTT-TTT-T-AC-CATGATTTAATC
1 TCATTTTTATTTCTGACCCATGGTTCAATCTCTGATCATTTTTATTTCTGACTCATGGTTTAATC
* ** * * * ** *
8222027 TCGGTCATTTTTATTCTCTGACCCATGGTTTAATCCTGGTTGTTTTTATTTCTAACTCATGGTTT
66 CCGGTCATCATTATTCTCTGACTCATGGTTCAATCCTAGTCATTTTTATTTCTAACTCATAGTTT
* *
8222092 AATCCCGG
131 AATCTCGA
* * * * * * * *
8222100 TCGTTTCTATTTTTGACTCATGGTTTAAT-TC-GAGTAATTTTTATTTCTGACTTATGGTCTAAT
1 TCATTTTTATTTCTGACCCATGGTTCAATCTCTGA-TCATTTTTATTTCTGACTCATGGTTTAAT
** * ** * * * * * *
8222163 CTTGGTCGTTTTTATT-TCTGTCTCATGATTTAAT-CT-GATCGTTTTTATTTCTGAC-CTATGG
65 CCCGGTCATCATTATTCTCTGACTCATGGTTCAATCCTAG-TCATTTTTATTTCTAACTC-ATAG
*
8222224 TTTAATCCCGA
128 TTTAATCTCGA
* * * * * * * *
8222235 TCATTTTTATTTTTGACTCATGGTTTAATCTCAG-TCGTTTTTATTTTTAACCCATGGTTTAATC
1 TCATTTTTATTTCTGACCCATGGTTCAATCTCTGATCATTTTTATTTCTGACTCATGGTTTAATC
* * ** * * * * * * *
8222299 CTGATCATTTTTATT-TTTAACTCATGATTTAA-CCTCAATCATTTTTATTTTTGACTCATAGTT
66 CCGGTCATCATTATTCTCTGACTCATGGTTCAATCCT-AGTCATTTTTATTTCTAACTCATAGTT
* *
8222362 TAATTTTGA
130 TAATCTCGA
* * * * * * * *
8222371 TCATTTTTATTTCTAACTCATAGTTTAATC-CTGGTCATTTTTATTTTTGACTCATTGTTTTATC
1 TCATTTTTATTTCTGACCCATGGTTCAATCTCTGATCATTTTTATTTCTGACTCATGGTTTAATC
* * *
8222435 CCGGTCATCGTTATTCTTTGACTCATGGTTCAATCCTAGTCATTTTTATTTCTAACTCATAATTT
66 CCGGTCATCATTATTCTCTGACTCATGGTTCAATCCTAGTCATTTTTATTTCTAACTCATAGTTT
*
8222500 AATCTTGA
131 AATCTCGA
* * * ** * *
8222508 TCATTTTTATTT-TGAACTCATGGTTTAATC-CCGATCATCATTATTCTCTGA-TCCA-AGTTCA
1 TCATTTTTATTTCTG-ACCCATGGTTCAATCTCTGATCATTTTTATT-TCTGACT-CATGGTTTA
** ** * * * * *
8222569 ATCCCAATCATTTTTATT-TCTGACTCATAGTTTAATCTTGGTCATTTTTATTT-TCGACTCAT-
63 ATCCCGGTCATCATTATTCTCTGACTCATGGTTCAATCCTAGTCATTTTTATTTCT-AACTCATA
*
8222631 GATTTAATCCCGA
127 G-TTTAATCTCGA
* *
8222644 TCATTTTTTATTCTCTGACCCATGGTTCAAT-TTTGGTCATTTTTATTTCTGACTCATGGTTTAA
1 TCA-TTTTTATT-TCTGACCCATGGTTCAATCTCTGATCATTTTTATTTCTGACTCATGGTTTAA
** * *
8222708 TTTCGGTCATCATTATTCTCTAACTCATGGTTCAATCCCAGTCA-TTTTATTTCTAACTCATAGT
64 TCCCGGTCATCATTATTCTCTGACTCATGGTTCAATCCTAGTCATTTTTATTTCTAACTCATAGT
8222772 TTAATCTCGA
129 TTAATCTCGA
** * *
8222782 TCATGCTTATTCTCTGACCCATGGTTCAATCTCT-ATTATTTTTATTTCTAAC-CTATGGTTTAA
1 TCATTTTTATT-TCTGACCCATGGTTCAATCTCTGATCATTTTTATTTCTGACTC-ATGGTTTAA
** * ** ** * * * * *
8222845 TCTTGATTGTTTTTATTCTTTGACCCATGGTTCAATCCT-GATCATTTTTATTTTTGACTCATGG
64 TCCCGGTCATCATTATTCTCTGACTCATGGTTCAATCCTAG-TCATTTTTATTTCTAACTCATAG
8222909 TTTAA
128 TTTAA
8222914 CTCCAGTCAT
Statistics
Matches: 654, Mismatches: 126, Indels: 63
0.78 0.15 0.07
Matches are distributed among these distances:
132 3 0.00
133 32 0.05
134 5 0.01
135 113 0.17
136 159 0.24
137 219 0.33
138 99 0.15
139 24 0.04
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.50
Consensus pattern (138 bp):
TCATTTTTATTTCTGACCCATGGTTCAATCTCTGATCATTTTTATTTCTGACTCATGGTTTAATC
CCGGTCATCATTATTCTCTGACTCATGGTTCAATCCTAGTCATTTTTATTTCTAACTCATAGTTT
AATCTCGA
Found at i:8223720 original size:129 final size:129
Alignment explanation
Indices: 8223565--8223801 Score: 316
Period size: 129 Copynumber: 1.8 Consensus size: 129
8223555 AAGGGAAAAT
* * * ** * * *
8223565 TTACCAAAATACCCTTAAAGGGGTATTTTGGTAATTTGGCTTTTCCAAGCGT-GGATTTTCATGT
1 TTACCAAAATACCATTAAAGGGGTATTTTCGTAATTTAGCTTTTCCAAGC-TCAAAATTTCACGA
* * *
8223629 AACTTTCCAGATTTTAATTTTATAATATTTCATGATTTTTTGTGTATACCTCAAAAAGTGTGAAA
65 AACTTTCCAGATCTCAATTCTATAATATTTCATGATTTTTTGTGTATACCTCAAAAAGTGTGAAA
* *
8223694 TTACCAAAATACCATTATAA-GGGTATTTTCGTAATTTAGCTTTTTCGAGCTCAAAATTTCACGA
1 TTACCAAAATACCATTA-AAGGGGTATTTTCGTAATTTAGCTTTTCCAAGCTCAAAATTTCACGA
*
8223758 AACTTTTCAGATCTCAATTCTATAATATTTCATGATTTTTTGTG
65 AACTTTCCAGATCTCAATTCTATAATATTTCATGATTTTTTGTG
8223802 CTTTAAAATC
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
128 1 0.01
129 89 0.97
130 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (129 bp):
TTACCAAAATACCATTAAAGGGGTATTTTCGTAATTTAGCTTTTCCAAGCTCAAAATTTCACGAA
ACTTTCCAGATCTCAATTCTATAATATTTCATGATTTTTTGTGTATACCTCAAAAAGTGTGAAA
Found at i:8229710 original size:29 final size:28
Alignment explanation
Indices: 8229678--8229733 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
8229668 CAACAACAAC
* * *
8229678 AATAATAATAAAAATCTAAAAGTAAAATA
1 AATAAAAATAAAAA-CAAAAAATAAAATA
*
8229707 AATAAAAATATAAACAAAAAATAAAAT
1 AATAAAAATAAAAACAAAAAATAAAAT
8229734 GAAAAAAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (28 bp):
AATAAAAATAAAAACAAAAAATAAAATA
Found at i:8229727 original size:23 final size:23
Alignment explanation
Indices: 8229684--8229731 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
8229674 CAACAATAAT
* *
8229684 AATAAAAATCTAAAAGTAAAATA
1 AATAAAAATATAAAAGAAAAATA
8229707 AATAAAAATATAAACA-AAAAATA
1 AATAAAAATATAAA-AGAAAAATA
8229730 AA
1 AA
8229732 ATGAAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 21 0.95
24 1 0.05
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (23 bp):
AATAAAAATATAAAAGAAAAATA
Found at i:8230512 original size:15 final size:15
Alignment explanation
Indices: 8230492--8230520 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8230482 TAAGGATTTG
8230492 CCTTAAGATTGGATC
1 CCTTAAGATTGGATC
8230507 CCTTAAGATTGGAT
1 CCTTAAGATTGGAT
8230521 TTATCACCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (15 bp):
CCTTAAGATTGGATC
Found at i:8231422 original size:21 final size:21
Alignment explanation
Indices: 8231398--8231437 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8231388 TAAACATAGC
8231398 AATCAACTACTAACTTGTAGT
1 AATCAACTACTAACTTGTAGT
* *
8231419 AATCGACTAGTAACTTGTA
1 AATCAACTACTAACTTGTA
8231438 TAGTCTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
AATCAACTACTAACTTGTAGT
Found at i:8231974 original size:58 final size:58
Alignment explanation
Indices: 8231851--8232003 Score: 216
Period size: 58 Copynumber: 2.6 Consensus size: 58
8231841 ACTTCAAAGT
* * * * * *
8231851 AGAATCTAAGAAATCAGTAAAGTTTGTACCTTTTCCTTGGGTAGCATCAAAATACCACA
1 AGAATCTAAGAAATCGGCAAACTTTGTACCCTTT-CTTGGATAGCAACAAAATACCACA
* * *
8231910 AAAATCTAAGAAATCGGCAAATTTTGTACCCTTTCTTGGATAGCAACAAAATACCATA
1 AGAATCTAAGAAATCGGCAAACTTTGTACCCTTTCTTGGATAGCAACAAAATACCACA
8231968 AGAATCTAAGAAATCGGCAAACTTTGTACCCTTTCT
1 AGAATCTAAGAAATCGGCAAACTTTGTACCCTTTCT
8232004 CCCTTTCTTG
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
58 55 0.65
59 29 0.35
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (58 bp):
AGAATCTAAGAAATCGGCAAACTTTGTACCCTTTCTTGGATAGCAACAAAATACCACA
Found at i:8234187 original size:20 final size:20
Alignment explanation
Indices: 8234144--8234189 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
8234134 TCGAATAACT
** * *
8234144 AAAAAAAAAAAATCAAAGGC
1 AAAAAAAAAAAAGAAAAAGA
8234164 AAAAAAAAAAAAGAAAAAGA
1 AAAAAAAAAAAAGAAAAAGA
8234184 AAAAAA
1 AAAAAA
8234190 TGAGGGTCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.85, C:0.04, G:0.09, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAAAAGAAAAAGA
Found at i:8235527 original size:20 final size:20
Alignment explanation
Indices: 8235468--8235527 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
8235458 CACGAATCGT
8235468 AATATATAAT-TTTTATATAA
1 AATAT-TAATATTTTATATAA
** *
8235488 AATATT-ATATAAATACATAA
1 AATATTAATAT-TTTATATAA
*
8235508 ATTATTAATATTTTATATAA
1 AATATTAATATTTTATATAA
8235528 TATAAATAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
18 2 0.07
19 2 0.07
20 22 0.73
21 4 0.13
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATTAATATTTTATATAA
Found at i:8236274 original size:34 final size:35
Alignment explanation
Indices: 8236197--8236282 Score: 97
Period size: 34 Copynumber: 2.5 Consensus size: 35
8236187 ATTTGAGGCC
*
8236197 TCTTGGAAATTGATTTTCAAAAAGACTTAATGCCT
1 TCTTGGCAATTGATTTTCAAAAAGACTTAATGCCT
* * **
8236232 T-ATAGCAATTGATTTGT-AAAAAGACTTAA-GTTT
1 TCTTGGCAATTGATTT-TCAAAAAGACTTAATGCCT
8236265 TCTTGGCAATTGATTTTC
1 TCTTGGCAATTGATTTTC
8236283 GAGAAACTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
33 4 0.10
34 35 0.85
35 2 0.05
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.41
Consensus pattern (35 bp):
TCTTGGCAATTGATTTTCAAAAAGACTTAATGCCT
Found at i:8238265 original size:61 final size:62
Alignment explanation
Indices: 8238170--8238286 Score: 191
Period size: 61 Copynumber: 1.9 Consensus size: 62
8238160 TTTTATCATT
* * *
8238170 TAAAAGTTTTTTTACTAATTGGTTAATTTAAATTATATGATATC-ATACTAATGATATTTAG
1 TAAAAGCTTTTTCACTAATTAGTTAATTTAAATTATATGATATCAATACTAATGATATTTAG
*
8238231 TAAAAGCTTTTTCATTAATTAGTTAATTTAAATTATATGATATCAATACTAATGAT
1 TAAAAGCTTTTTCACTAATTAGTTAATTTAAATTATATGATATCAATACTAATGAT
8238287 GTTATTAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
61 40 0.78
62 11 0.22
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (62 bp):
TAAAAGCTTTTTCACTAATTAGTTAATTTAAATTATATGATATCAATACTAATGATATTTAG
Found at i:8239027 original size:17 final size:19
Alignment explanation
Indices: 8239000--8239049 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 19
8238990 ACATGTTCAT
*
8239000 AACATATTATAAAAC-ATA
1 AACATAATATAAAACAATA
8239018 AACA-AATAT-AAACAATA
1 AACATAATATAAAACAATA
8239035 AACATTAATATAAAA
1 AACA-TAATATAAAA
8239050 TTTTTAGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 4 0.15
17 11 0.41
18 4 0.15
19 5 0.19
20 3 0.11
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (19 bp):
AACATAATATAAAACAATA
Found at i:8242181 original size:34 final size:34
Alignment explanation
Indices: 8242124--8242204 Score: 81
Period size: 34 Copynumber: 2.4 Consensus size: 34
8242114 TTCATAATTC
* * * * *
8242124 TATTTCCAAAAATATATTGTAATTCTTAAAAATA
1 TATTTCCAAGAATATAGTATAATTATCAAAAATA
* *
8242158 TATTTCCAAGAATCTAGTATAATTATCGAAAATA
1 TATTTCCAAGAATATAGTATAATTATCAAAAATA
* *
8242192 AATTTACAAGAAT
1 TATTTCCAAGAAT
8242205 TATAAAATTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (34 bp):
TATTTCCAAGAATATAGTATAATTATCAAAAATA
Found at i:8243242 original size:20 final size:17
Alignment explanation
Indices: 8243207--8243240 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8243197 TGTTACTTTA
8243207 TAAAAAAATATTATAAT
1 TAAAAAAATATTATAAT
8243224 TAAAAAAATATTATAAT
1 TAAAAAAATATTATAAT
8243241 AAATTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAAAAATATTATAAT
Found at i:8252574 original size:22 final size:20
Alignment explanation
Indices: 8252511--8252589 Score: 68
Period size: 22 Copynumber: 3.6 Consensus size: 20
8252501 TTGCAATTTG
8252511 CAATTGAAATTCAAAAGTTCA
1 CAATTGAAATTCAAAA-TTCA
*
8252532 CAATTGAAAATTTAAACATTCA
1 CAATTG-AAATTCAAA-ATTCA
* *
8252554 TAATTTGAAATTCAAGAATTCT
1 CAA-TTGAAATTCAA-AATTCA
*
8252576 CAACTTGAAGTTCA
1 CAA-TTGAAATTCA
8252590 GAAGTTTGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
21 6 0.13
22 36 0.77
23 5 0.11
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (20 bp):
CAATTGAAATTCAAAATTCA
Found at i:8252737 original size:36 final size:36
Alignment explanation
Indices: 8252689--8252919 Score: 139
Period size: 36 Copynumber: 6.3 Consensus size: 36
8252679 GATAAATTGA
*
8252689 ATTCAAAGATTCTAAAAAAATTTAAGATTCGTAAAAG
1 ATTC-AAGATTCTACAAAAATTTAAGATTCGTAAAAG
* * * * *
8252726 ATTCAAGATTCTAAAAAAATTCAAGTTTTG-CAAAG
1 ATTCAAGATTCTACAAAAATTTAAGATTCGTAAAAG
* * * **
8252761 ATTCAAAAATTC-ACTAAAGATTCAAAGATTCACAAAAG
1 ATTC-AAGATTCTAC-AAAAATT-TAAGATTCGTAAAAG
* ** * * *
8252799 ATTCAAGATT-TGCTCAGATTCAAAGATTTGTAAAAG
1 ATTCAAGATTCTACAAAAATT-TAAGATTCGTAAAAG
* * **
8252835 ATTCGATATT-TACAAAAATTTCAAGATTCACAAAAG
1 ATTCAAGATTCTACAAAAATTT-AAGATTCGTAAAAG
* *
8252871 ATTCAAGATT-TGCAAAGATTTAAAGATTCGTAAAAG
1 ATTCAAGATTCTACAAAAATTT-AAGATTCGTAAAAG
8252907 ATTTCAAGGATTC
1 A-TTCAA-GATTC
8252920 AAAGATTAGC
Statistics
Matches: 149, Mismatches: 36, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
35 9 0.06
36 108 0.72
37 20 0.13
38 12 0.08
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (36 bp):
ATTCAAGATTCTACAAAAATTTAAGATTCGTAAAAG
Found at i:8252781 original size:19 final size:19
Alignment explanation
Indices: 8252757--8252804 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
8252747 CAAGTTTTGC
*
8252757 AAAGATTCAAAAATTCACT
1 AAAGATTCAAAAATTCACA
*
8252776 AAAGATTCAAAGATTCACA
1 AAAGATTCAAAAATTCACA
8252795 AAAGATTCAA
1 AAAGATTCAA
8252805 GATTTGCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (19 bp):
AAAGATTCAAAAATTCACA
Found at i:8252808 original size:18 final size:18
Alignment explanation
Indices: 8252689--8252920 Score: 107
Period size: 18 Copynumber: 12.7 Consensus size: 18
8252679 GATAAATTGA
*
8252689 ATTCAAAGATTCTA-AAAAA
1 ATTC-AAGATTC-ACAAAAG
* **
8252708 ATTTAAGATTCGTAAAAG
1 ATTCAAGATTCACAAAAG
*
8252726 ATTCAAGATTCTA-AAAAA
1 ATTCAAGATTC-ACAAAAG
* **
8252744 ATTCAAGTTTTGC-AAAG
1 ATTCAAGATTCACAAAAG
* *
8252761 ATTCAAAAATTCACTAAAG
1 ATTC-AAGATTCACAAAAG
8252780 ATTCAAAGATTCACAAAAG
1 ATTC-AAGATTCACAAAAG
** **
8252799 ATTCAAGATTTGC-TCAG
1 ATTCAAGATTCACAAAAG
***
8252816 ATTCAAAGATTTGTAAAAG
1 ATTC-AAGATTCACAAAAG
* * *
8252835 ATTCGATATTTACAAAA-
1 ATTCAAGATTCACAAAAG
8252852 ATTTCAAGATTCACAAAAG
1 A-TTCAAGATTCACAAAAG
**
8252871 ATTCAAGATTTGC-AAAG
1 ATTCAAGATTCACAAAAG
* **
8252888 ATTTAAAGATTCGTAAAAG
1 A-TTCAAGATTCACAAAAG
8252907 ATTTCAAGGATTCA
1 A-TTCAA-GATTCA
8252921 AAGATTAGCA
Statistics
Matches: 164, Mismatches: 37, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
17 19 0.12
18 95 0.58
19 45 0.27
20 5 0.03
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (18 bp):
ATTCAAGATTCACAAAAG
Found at i:8252835 original size:55 final size:54
Alignment explanation
Indices: 8252712--8252880 Score: 148
Period size: 55 Copynumber: 3.1 Consensus size: 54
8252702 AAAAAAATTT
* *
8252712 AAGATTCGTAAAAGATTCAAGATTCTAAAAAAATTCAAGTTTTGCAAAGATTCA
1 AAGATTAGTAAAAGATTCAAGATTCTAAAAAAATTCAAGATTTGCAAAGATTCA
* * * **
8252766 AAAATTCACT-AAAGATTCAAAGATTC-ACAAAAGATTCAAGATTTGCTCAGATTCA
1 AAGATT-AGTAAAAGATTC-AAGATTCTA-AAAAAATTCAAGATTTGCAAAGATTCA
* * * * **
8252821 AAGATTTGTAAAAGATTCGATATT-TACAAAAATTTCAAGATTCACAAAAGATTC-
1 AAGATTAGTAAAAGATTCAAGATTCTA-AAAAAATTCAAGATTTGC-AAAGATTCA
8252875 AAGATT
1 AAGATT
8252881 TGCAAAGATT
Statistics
Matches: 91, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
54 41 0.45
55 50 0.55
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (54 bp):
AAGATTAGTAAAAGATTCAAGATTCTAAAAAAATTCAAGATTTGCAAAGATTCA
Found at i:8252890 original size:28 final size:28
Alignment explanation
Indices: 8252857--8252976 Score: 85
Period size: 28 Copynumber: 4.3 Consensus size: 28
8252847 CAAAAATTTC
8252857 AAGATTCACAAAAGATTCAAGATTTGCA
1 AAGATTCACAAAAGATTCAAGATTTGCA
*
8252885 AAGATT---TAAAGATTCGTAAAAGATTT-CA
1 AAGATTCACAAAAGATTC----AAGATTTGCA
*
8252913 AGGATT--C-AAAGATTAGCAAG-TGATTGCA
1 AAGATTCACAAAAGATT--CAAGAT--TTGCA
*
8252941 AAGATTCACAAAAGATTTAAGATTTGCA
1 AAGATTCACAAAAGATTCAAGATTTGCA
8252969 AAGATTCA
1 AAGATTCA
8252977 TATATTCGTA
Statistics
Matches: 74, Mismatches: 4, Indels: 28
0.70 0.04 0.26
Matches are distributed among these distances:
25 9 0.12
26 3 0.04
27 2 0.03
28 40 0.54
29 10 0.14
30 3 0.04
31 7 0.09
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.28
Consensus pattern (28 bp):
AAGATTCACAAAAGATTCAAGATTTGCA
Found at i:8252923 original size:36 final size:36
Alignment explanation
Indices: 8252776--8253091 Score: 168
Period size: 36 Copynumber: 8.4 Consensus size: 36
8252766 AAAATTCACT
*
8252776 AAAGATTCAAAGATTCACAAAAGATTCAAGATTTGC
1 AAAGATTTAAAGATTCACAAAAGATTCAAGATTTGC
** * *** * * *
8252812 TCAGATTCAAAGATTTGTAAAAGATTCGATATTTAC
1 AAAGATTTAAAGATTCACAAAAGATTCAAGATTTGC
* *
8252848 AAAAATTTCAAGATTCACAAAAGATTCAAGATTTGC
1 AAAGATTTAAAGATTCACAAAAGATTCAAGATTTGC
* *
8252884 AAAGATTTAAAGATTCGTAAAAGATTTCAAGGATTCAAAGATTAGC
1 AAAGATTTAAAGATTC---ACA-A----AA-GATTC-AAGATTTGC
* * *
8252930 AAGTGATTGCAAAGATTCACAAAAGATTTAAGATTTGC
1 AA-AGATT-TAAAGATTCACAAAAGATTCAAGATTTGC
* * * ** * * * *
8252968 AAAGATTCATATATTCGTAAAGGATTTAAAATTTGT
1 AAAGATTTAAAGATTCACAAAAGATTCAAGATTTGC
* * * * * *
8253004 AAAAATTCAAAGATTCGCAAAAAATTTAAGATTTGT
1 AAAGATTTAAAGATTCACAAAAGATTCAAGATTTGC
* *
8253040 AAAGATTCAAAGATT-AGCAAAATATTTCAAAGATTT-C
1 AAAGATTTAAAGATTCA-CAAAAGA-TTC-AAGATTTGC
*
8253077 AAAGATTCAAAGATT
1 AAAGATTTAAAGATT
8253092 TGGAAGTGAT
Statistics
Matches: 217, Mismatches: 48, Indels: 29
0.74 0.16 0.10
Matches are distributed among these distances:
36 138 0.64
37 21 0.10
38 17 0.08
39 6 0.03
40 3 0.01
44 3 0.01
45 7 0.03
46 10 0.05
47 4 0.02
48 8 0.04
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (36 bp):
AAAGATTTAAAGATTCACAAAAGATTCAAGATTTGC
Found at i:8252963 original size:156 final size:156
Alignment explanation
Indices: 8252779--8253422 Score: 392
Period size: 156 Copynumber: 4.1 Consensus size: 156
8252769 ATTCACTAAA
** * * *
8252779 GATTCAAAGATTCACAAAAGATTCAAGATTTGCTCAGATTCAAAGATTTGTAAAAGATTCGATAT
1 GATTCAAAGATTCACAAAAGATTCAAGATTTGCAAAGATTCAAAGATTCGTAAAAGATTCAAAAT
* * * *
8252844 TTACAAAAATTTC-AAGATTCACAAAAGATTCAAGATTTGCAAAGATTTAAAGATTCGTAAAAGA
66 TTACAAAAA-TTCAAAGATTCACAAAAAATTCAAGATTTGCAAAGATTCAAAGATTAGCAAAAGA
*
8252908 TTTCAAGGA-TTCAAAGATTAGCAAGT
130 TTTCAAAGATTTCAAAGATTAGCAAGT
* * * * *
8252934 GATTGCAAAGATTCACAAAAGATTTAAGATTTGCAAAGATTCATATATTCGTAAAGGATTTAAAA
1 GATT-CAAAGATTCACAAAAGATTCAAGATTTGCAAAGATTCAAAGATTCGTAAAAGATTCAAAA
** * * * *
8252999 TTTGTAAAAATTCAAAGATTCGCAAAAAATTTAAGATTTGTAAAGATTCAAAGATTAGCAAAATA
65 TTTACAAAAATTCAAAGATTCACAAAAAATTCAAGATTTGCAAAGATTCAAAGATTAGCAAAAGA
*
8253064 TTTCAAAGATTTCAAAGATTCAAAGATTTGGAAGT
130 TTTCAAAGATTTCAAAGATT-----A---GCAAGT
* * * * * *
8253099 GATTTCAAAGGTTCGCAAAAGATTTCAAATATTTGCAAAAATTGAAAGATTC-AAAAAG-TTCAA
1 GA-TTCAAAGATTCACAAAAGA-TTC-AAGATTTGCAAAGATTCAAAGATTCGTAAAAGATTCAA
* ** * *
8253162 AGATTTGCAAAATATTTCAAAGATTCGTAAAAAATTTCAAAGATTCGC--A-TTTGC-AA-ATTA
63 A-ATTTACAAAA-A-TTCAAAGATTCACAAAAAA-TTC-AAGATTTGCAAAGATT-CAAAGATTA
*** * * * * *
8253222 -TTTAAGATTTGTAAAGATTT-AAAAATTTGTAA-A
122 GCAAAAGATTT-CAAAGATTTCAAAGATTAGCAAGT
* ** ** * * * * *
8253255 GATTTAAAGATTTGCAAAAGATTCAAGATTCACAAGAGATTCAAAGATTTGCAAGAGATTTAAGA
1 GATTCAAAGATTCACAAAAGATTCAAGATTTGCAA-AGATTCAAAGATTCGTAAAAGATTCAAAA
*** * * ** *
8253320 TTCGTAAAAGTTAAAAGATTCAC--AACTTTCAAGATTTGCAAGTGATTC-AAGATTCA-CAAAA
65 TTTACAAAAATTCAAAGATTCACAAAAAATTCAAGATTTGCAA-AGATTCAAAGATT-AGCAAAA
* *
8253381 -A-TTC-AAGA-TTCAAAGATTCGCAAAT
128 GATTTCAAAGATTTCAAAGATTAGCAAGT
8253406 GATTCAAAGATTCACAA
1 GATTCAAAGATTCACAA
8253423 TTAAAACTTT
Statistics
Matches: 374, Mismatches: 83, Indels: 68
0.71 0.16 0.13
Matches are distributed among these distances:
149 10 0.03
150 16 0.04
151 16 0.04
152 5 0.01
153 24 0.06
154 17 0.05
155 35 0.09
156 115 0.31
157 13 0.03
162 1 0.00
165 39 0.10
166 29 0.08
167 25 0.07
168 20 0.05
169 2 0.01
170 7 0.02
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.31
Consensus pattern (156 bp):
GATTCAAAGATTCACAAAAGATTCAAGATTTGCAAAGATTCAAAGATTCGTAAAAGATTCAAAAT
TTACAAAAATTCAAAGATTCACAAAAAATTCAAGATTTGCAAAGATTCAAAGATTAGCAAAAGAT
TTCAAAGATTTCAAAGATTAGCAAGT
Found at i:8252970 original size:18 final size:18
Alignment explanation
Indices: 8252949--8253321 Score: 93
Period size: 18 Copynumber: 19.9 Consensus size: 18
8252939 CAAAGATTCA
8252949 CAAAAGATTTAAGATTTG
1 CAAAAGATTTAAGATTTG
* * *
8252967 C-AAAGATTCATATATTCG
1 CAAAAGATTTA-AGATTTG
* * *
8252985 TAAAGGATTTAAAATTTG
1 CAAAAGATTTAAGATTTG
* * *
8253003 TAAAA-ATTCAAAGATTCG
1 CAAAAGATT-TAAGATTTG
*
8253021 CAAAAAATTTAAGATTTG
1 CAAAAGATTTAAGATTTG
* * *
8253039 -TAAAGATTCAAAGATTAG
1 CAAAAGATT-TAAGATTTG
*
8253057 CAAAATATTTCAAAGATTT-
1 CAAAAGATTT--AAGATTTG
*
8253076 C-AAAGATTCAAAGATTTG
1 CAAAAGATT-TAAGATTTG
* ** * *
8253094 GAAGTGATTTCAAAGGTTCG
1 CAAAAGATTT--AAGATTTG
*
8253114 CAAAAGATTTCAAATATTTG
1 CAAAAGATTT--AAGATTTG
*
8253134 CAAAA-ATTGAAAGA-TT-
1 CAAAAGATT-TAAGATTTG
*
8253150 CAAAA-AGTTCAAAGATTTG
1 CAAAAGA-TT-TAAGATTTG
* *
8253169 CAAAATATTTCAAAGATTCG
1 CAAAAGATTT--AAGATTTG
* *
8253189 TAAAAAATTTCAAAGATTCGCATTTG
1 CAAAAGATTT---A-A---G-ATTTG
**
8253215 CAAATTATTTAAGATTTG
1 CAAAAGATTTAAGATTTG
* *
8253233 -TAAAGATTTAAAAATTTG
1 CAAAAGATTT-AAGATTTG
*
8253251 -TAAAGATTTAAAGATTTG
1 CAAAAGATTT-AAGATTTG
* **
8253269 CAAAAGATTCAAGATTCA
1 CAAAAGATTTAAGATTTG
* *
8253287 CAAGAGATTCAAAGATTTG
1 CAAAAGATT-TAAGATTTG
*
8253306 CAAGAGATTTAAGATT
1 CAAAAGATTTAAGATT
8253322 CGTAAAAGTT
Statistics
Matches: 263, Mismatches: 63, Indels: 58
0.68 0.16 0.15
Matches are distributed among these distances:
16 6 0.02
17 39 0.15
18 99 0.38
19 55 0.21
20 47 0.18
21 2 0.01
22 2 0.01
23 1 0.00
25 1 0.00
26 11 0.04
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (18 bp):
CAAAAGATTTAAGATTTG
Found at i:8253053 original size:8 final size:8
Alignment explanation
Indices: 8253040--8253091 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 8
8253030 TAAGATTTGT
8253040 AAAGATTC
1 AAAGATTC
8253048 AAAGATTAGC
1 AAAGATT--C
*
8253058 AAAATATTTC
1 -AAAGA-TTC
8253068 AAAGATTTC
1 AAAGA-TTC
8253077 AAAGATTC
1 AAAGATTC
8253085 AAAGATT
1 AAAGATT
8253092 TGGAAGTGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 17 0.45
9 13 0.34
10 2 0.05
11 4 0.11
12 2 0.05
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (8 bp):
AAAGATTC
Found at i:8253070 original size:20 final size:20
Alignment explanation
Indices: 8253009--8253206 Score: 143
Period size: 20 Copynumber: 10.5 Consensus size: 20
8252999 TTTGTAAAAA
* *
8253009 TTCAAAGATTCGCAAAAAAT
1 TTCAAAGATTTGCAAAATAT
* *
8253029 TT--AAGATTTG-TAAAGA-
1 TTCAAAGATTTGCAAAATAT
*
8253045 TTCAAAGATTAGCAAAATAT
1 TTCAAAGATTTGCAAAATAT
*
8253065 TTCAAAGATTT-C-AAAGA-
1 TTCAAAGATTTGCAAAATAT
* *
8253082 TTCAAAGATTTG-GAAGTGAT
1 TTCAAAGATTTGCAAAAT-AT
* * *
8253102 TTCAAAGGTTCGCAAAAGAT
1 TTCAAAGATTTGCAAAATAT
*
8253122 TTCAAATATTTGCAAAA-A-
1 TTCAAAGATTTGCAAAATAT
* *
8253140 TTGAAAGA-TT-CAAAA-AG
1 TTCAAAGATTTGCAAAATAT
8253157 TTCAAAGATTTGCAAAATAT
1 TTCAAAGATTTGCAAAATAT
* * *
8253177 TTCAAAGATTCGTAAAAAAT
1 TTCAAAGATTTGCAAAATAT
8253197 TTCAAAGATT
1 TTCAAAGATT
8253207 CGCATTTGCA
Statistics
Matches: 140, Mismatches: 25, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
16 8 0.06
17 24 0.17
18 28 0.20
19 12 0.09
20 66 0.47
21 2 0.01
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.31
Consensus pattern (20 bp):
TTCAAAGATTTGCAAAATAT
Found at i:8253077 original size:9 final size:9
Alignment explanation
Indices: 8253040--8253206 Score: 81
Period size: 9 Copynumber: 17.8 Consensus size: 9
8253030 TAAGATTTGT
8253040 AAAGA-TTC
1 AAAGATTTC
*
8253048 AAAGATTAGC
1 AAAGATT-TC
*
8253058 AAAATATTTC
1 -AAAGATTTC
8253068 AAAGATTTC
1 AAAGATTTC
8253077 AAAGA-TTC
1 AAAGATTTC
*
8253085 AAAGATTTGG
1 AAAGATTT-C
*
8253095 AAGTGATTTC
1 AA-AGATTTC
* *
8253105 AAAGGTTCGC
1 AAAGATT-TC
8253115 AAAAGATTTC
1 -AAAGATTTC
*
8253125 AAATATTTGC
1 AAAGATTT-C
* *
8253135 AAA-AATTG
1 AAAGATTTC
8253143 AAAGA-TTC
1 AAAGATTTC
* *
8253151 AAAAAGTTC
1 AAAGATTTC
8253160 AAAGATTTGC
1 AAAGATTT-C
*
8253170 AAAATATTTC
1 -AAAGATTTC
*
8253180 AAAGATTCGTA
1 AAAGATT--TC
*
8253191 AAAAATTTC
1 AAAGATTTC
8253200 AAAGATT
1 AAAGATT
8253207 CGCATTTGCA
Statistics
Matches: 119, Mismatches: 25, Indels: 29
0.69 0.14 0.17
Matches are distributed among these distances:
8 22 0.18
9 52 0.44
10 14 0.12
11 31 0.26
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.30
Consensus pattern (9 bp):
AAAGATTTC
Found at i:8253090 original size:37 final size:37
Alignment explanation
Indices: 8253008--8253186 Score: 163
Period size: 37 Copynumber: 4.8 Consensus size: 37
8252998 ATTTGTAAAA
* * *
8253008 ATTCAAAGATTCGCAAAAAATTT--AAGATTTGTAAAG
1 ATTCAAAGATTTGCAAAATATTTCAAAGATTT-CAAAG
*
8253044 ATTCAAAGATTAGCAAAATATTTCAAAGATTTCAAAG
1 ATTCAAAGATTTGCAAAATATTTCAAAGATTTCAAAG
* * * *
8253081 ATTCAAAGATTTG-GAAGTGATTTCAAAGGTTCGCAAAAG
1 ATTCAAAGATTTGCAAAAT-ATTTCAAAGATT-TC-AAAG
* * *
8253120 ATTTCAAATATTTGCAAAA-A-TTGAAAGA-TTCAAAA
1 A-TTCAAAGATTTGCAAAATATTTCAAAGATTTCAAAG
8253155 AGTTCAAAGATTTGCAAAATATTTCAAAGATT
1 A-TTCAAAGATTTGCAAAATATTTCAAAGATT
8253187 CGTAAAAAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
35 20 0.17
36 26 0.23
37 35 0.30
38 15 0.13
39 6 0.05
40 11 0.10
41 2 0.02
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.31
Consensus pattern (37 bp):
ATTCAAAGATTTGCAAAATATTTCAAAGATTTCAAAG
Found at i:8253161 original size:75 final size:77
Alignment explanation
Indices: 8253004--8253206 Score: 215
Period size: 75 Copynumber: 2.7 Consensus size: 77
8252994 TAAAATTTGT
* * * *
8253004 AAAAATTCAAAGATTCGCAAAAAATTT--AAGATTTG-TAAAGA-TTCAAAGATTAGCAAAATAT
1 AAAAATTCAAAGATTTGCAAAATATTTCAAAGATTCGCAAAAGATTTCAAAGATTAGCAAAATAT
8253065 TTCAAAGATTTC
66 TTCAAAGATTTC
* * * * * *
8253077 AAAGATTCAAAGATTTG-GAAGTGATTTCAAAGGTTCGCAAAAGATTTCAAATATTTGCAAAA-A
1 AAAAATTCAAAGATTTGCAAAAT-ATTTCAAAGATTCGCAAAAGATTTCAAAGATTAGCAAAATA
*
8253140 -TTGAAAGA-TTC
65 TTTCAAAGATTTC
* *
8253151 AAAAAGTTCAAAGATTTGCAAAATATTTCAAAGATTCGTAAAAAATTTCAAAGATT
1 AAAAA-TTCAAAGATTTGCAAAATATTTCAAAGATTCGCAAAAGATTTCAAAGATT
8253207 CGCATTTGCA
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
72 2 0.02
73 19 0.18
74 7 0.07
75 53 0.50
76 9 0.09
77 15 0.14
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.30
Consensus pattern (77 bp):
AAAAATTCAAAGATTTGCAAAATATTTCAAAGATTCGCAAAAGATTTCAAAGATTAGCAAAATAT
TTCAAAGATTTC
Found at i:8254315 original size:13 final size:13
Alignment explanation
Indices: 8254297--8254349 Score: 70
Period size: 13 Copynumber: 3.9 Consensus size: 13
8254287 TGTAATGTTT
8254297 ATGAATGCAATGC
1 ATGAATGCAATGC
* *
8254310 ATGAATGCGATGTTT
1 ATGAATGCAATG--C
8254325 ATGAATGCAATGC
1 ATGAATGCAATGC
8254338 ATGAATGCAATG
1 ATGAATGCAATG
8254350 TTAATGAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 23 0.68
15 11 0.32
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (13 bp):
ATGAATGCAATGC
Found at i:8254323 original size:28 final size:28
Alignment explanation
Indices: 8254290--8254362 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
8254280 CATGAGTTGT
8254290 AATGTTTATGAATGCAATGCATGAATGC
1 AATGTTTATGAATGCAATGCATGAATGC
*
8254318 GATGTTTATGAATGCAATGCATGAATGC
1 AATGTTTATGAATGCAATGCATGAATGC
*
8254346 AATGTTAATGAATGCAA
1 AATGTTTATGAATGCAA
8254363 CTTTAATTGC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (28 bp):
AATGTTTATGAATGCAATGCATGAATGC
Found at i:8254330 original size:15 final size:15
Alignment explanation
Indices: 8254290--8254362 Score: 82
Period size: 15 Copynumber: 5.1 Consensus size: 15
8254280 CATGAGTTGT
*
8254290 AATGTTTATGAATGC
1 AATGTTCATGAATGC
8254305 AATG--CATGAATGC
1 AATGTTCATGAATGC
* *
8254318 GATGTTTATGAATGC
1 AATGTTCATGAATGC
8254333 AATG--CATGAATGC
1 AATGTTCATGAATGC
*
8254346 AATGTTAATGAATGC
1 AATGTTCATGAATGC
8254361 AA
1 AA
8254363 CTTTAATTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
13 23 0.48
15 25 0.52
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (15 bp):
AATGTTCATGAATGC
Found at i:8259351 original size:39 final size:38
Alignment explanation
Indices: 8259285--8259640 Score: 236
Period size: 39 Copynumber: 9.2 Consensus size: 38
8259275 TGGGTGTTTA
* * * *
8259285 TTTA-TTTTAAAGCTATGTGCTTTTGTTAAAAGGAGCC
1 TTTATTTTTAAAGTTGTGTGCCTCTGTTAAAAGGAGCC
* * * *
8259322 TTTATTTTTAAAAGTTGTGTGCTTCTGTTAAGAGAAGCT
1 TTTATTTTT-AAAGTTGTGTGCCTCTGTTAAAAGGAGCC
* *
8259361 TTTATTTTTAAAAGTTGTGTGCCTCTGTTAAGAGGAACC
1 TTTATTTTT-AAAGTTGTGTGCCTCTGTTAAAAGGAGCC
* * * * **
8259400 TTTATTTTTAAAGTCGTCTACCTTTGTTATGGAGGAGCAC
1 TTTATTTTTAAAGTTGTGTGCCTCTGTTA-AAAGGAGC-C
* ** * *
8259440 -TTATTTTTAAAAATCATGTGCCTCTATTATAAAGGAGCT
1 TTTATTTTT-AAAGTTGTGTGCCTCTGTTA-AAAGGAGCC
* *
8259479 TTTATTTTTAAAGTTGTGTGCCTCTATTAGAAGGAGTCC
1 TTTATTTTTAAAGTTGTGTGCCTCTGTTAAAAGGAG-CC
* * ** *
8259518 -TTATTTTTAAAGTTTTATGCCTCTGTTATGGATGAG-C
1 TTTATTTTTAAAGTTGTGTGCCTCTGTTA-AAAGGAGCC
* * * * * * *
8259555 TTTATTTTTATAGGTGTGTACCTCTATTATACAGAAGCT
1 TTTATTTTTAAAGTTGTGTGCCTCTGTTA-AAAGGAGCC
* * **
8259594 TTTATTTGTATAGTTGTGTGCCTCTGTTAGGAGGA-CC
1 TTTATTTTTAAAGTTGTGTGCCTCTGTTAAAAGGAGCC
8259631 TTTTATTTTT
1 -TTTATTTTT
8259641 CAATTTATTG
Statistics
Matches: 253, Mismatches: 55, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
37 6 0.02
38 88 0.35
39 129 0.51
40 30 0.12
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45
Consensus pattern (38 bp):
TTTATTTTTAAAGTTGTGTGCCTCTGTTAAAAGGAGCC
Found at i:8259616 original size:77 final size:77
Alignment explanation
Indices: 8259362--8259640 Score: 201
Period size: 77 Copynumber: 3.6 Consensus size: 77
8259352 AGAGAAGCTT
* * * * * *
8259362 TTATTTTTAAAAGTTGTGTGCCTCTGTTA-AGAGGAACCTTTATTTTTAAA-GTCGTCTACCTTT
1 TTATTTGT-AAAGTTGTGTGCCTCTGTTATGGAGGAGCTTTTATTTTTAAAGGT-GTGTACCTCT
* * *
8259425 GTTATGGAGGAG-CAC
64 ATTA-GAAGAAGTC-C
* * ** * ** * *
8259440 TTATTTTTAAAAATCATGTGCCTCTATTATAAAGGAGCTTTTATTTTTAAAGTTGTGTGCCTCTA
1 TTATTTGT-AAAGTTGTGTGCCTCTGTTATGGAGGAGCTTTTATTTTTAAAGGTGTGTACCTCTA
*
8259505 TTAGAAGGAGTCC
65 TTAGAAGAAGTCC
* * * * *
8259518 TTATTTTTAAAGTTTTATGCCTCTGTTATGGATGAGC-TTTATTTTTATAGGTGTGTACCTCTAT
1 TTATTTGTAAAGTTGTGTGCCTCTGTTATGGAGGAGCTTTTATTTTTAAAGGTGTGTACCTCTAT
* *
8259582 TATACAGAAG-CTT
66 TAGA-AGAAGTC-C
* *
8259595 TTATTTGTATAGTTGTGTGCCTCTGTTA-GGAGGACCTTTTATTTTT
1 TTATTTGTAAAGTTGTGTGCCTCTGTTATGGAGGAGCTTTTATTTTT
8259641 CAATTTATTG
Statistics
Matches: 162, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
76 34 0.21
77 58 0.36
78 40 0.25
79 29 0.18
80 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.45
Consensus pattern (77 bp):
TTATTTGTAAAGTTGTGTGCCTCTGTTATGGAGGAGCTTTTATTTTTAAAGGTGTGTACCTCTAT
TAGAAGAAGTCC
Found at i:8259637 original size:115 final size:116
Alignment explanation
Indices: 8259354--8259640 Score: 337
Period size: 115 Copynumber: 2.5 Consensus size: 116
8259344 TTCTGTTAAG
* *
8259354 AGAAGCTTTTATTTTTAAAAGTTGTGTGCCTCTGTTAAGAGGAACCTTTATTTTTAAAGTCGTCT
1 AGAAGCTTTTATTTTT-AAAGTTGTGTGCCTCTGTTAGGAGG-ACCTTTATTTTTAAAGTCGTAT
* *
8259419 ACCTTTGTTATGGAGGAGCACTTATTTTTAAAAATCATGTGCCTCTATTATAA
64 ACCTCTGTTATGGAGGAGCACTTATTTTTAAAAATCATGTACCTCTATTATAA
* * * **
8259472 AGGAGCTTTTATTTTTAAAGTTGTGTGCCTCTATTAGAAGGAGTCC-TTATTTTTAAAGTTTTAT
1 AGAAGCTTTTATTTTTAAAGTTGTGTGCCTCTGTTAGGAGGA--CCTTTATTTTTAAAGTCGTAT
* * * * ** * *
8259536 GCCTCTGTTATGGATGAGC-TTTATTTTTATAGGT-GTGTACCTCTATTATAC
64 ACCTCTGTTATGGAGGAGCACTTATTTTTAAAAATCATGTACCTCTATTATAA
* *
8259587 AGAAGCTTTTATTTGTATAGTTGTGTGCCTCTGTTAGGAGGACCTTTTATTTTT
1 AGAAGCTTTTATTTTTAAAGTTGTGTGCCTCTGTTAGGAGGACC-TTTATTTTT
8259641 CAATTTATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
113 2 0.01
115 59 0.41
116 12 0.08
117 53 0.37
118 17 0.12
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.45
Consensus pattern (116 bp):
AGAAGCTTTTATTTTTAAAGTTGTGTGCCTCTGTTAGGAGGACCTTTATTTTTAAAGTCGTATAC
CTCTGTTATGGAGGAGCACTTATTTTTAAAAATCATGTACCTCTATTATAA
Found at i:8261744 original size:46 final size:44
Alignment explanation
Indices: 8261692--8261778 Score: 138
Period size: 46 Copynumber: 1.9 Consensus size: 44
8261682 TTATCATATC
*
8261692 TTTCTCATTTCTTATTTTTCTTTTTCCTTTTCATTTCTTTTTCTCA
1 TTTCTCATTTCTTATTATTCTTTTT-CTTTTCATTT-TTTTTCTCA
*
8261738 TTTCTCATTTTTTATTATTCTTTTTCTTTTCATTTTTTTTC
1 TTTCTCATTTCTTATTATTCTTTTTCTTTTCATTTTTTTTC
8261779 CTTTCATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 6 0.15
45 10 0.26
46 23 0.59
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.72
Consensus pattern (44 bp):
TTTCTCATTTCTTATTATTCTTTTTCTTTTCATTTTTTTTCTCA
Found at i:8261748 original size:26 final size:26
Alignment explanation
Indices: 8261696--8261748 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8261686 CATATCTTTC
* * *
8261696 TCATTTCTTATTTTTCTTTTTCCTTT
1 TCATTTCTTATTTCTCTTTCTCATTT
8261722 TCATTTCTT-TTTCTCATTTCTCATTT
1 TCATTTCTTATTTCTC-TTTCTCATTT
8261748 T
1 T
8261749 TTATTATTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (26 bp):
TCATTTCTTATTTCTCTTTCTCATTT
Found at i:8261793 original size:40 final size:45
Alignment explanation
Indices: 8261693--8261793 Score: 115
Period size: 46 Copynumber: 2.3 Consensus size: 45
8261683 TATCATATCT
*
8261693 TTCTCATTTC-TTATTTTTCTTTTTCCTTTTCATTTCTTTTTCTCA
1 TTCTCA-TTCATTATTATTCTTTTTCCTTTTCATTTCTTTTTCTCA
**
8261738 TTTCTCATTTTTTATTATTCTTTTT-CTTTTCATTT-TTTTTC-C-
1 -TTCTCATTCATTATTATTCTTTTTCCTTTTCATTTCTTTTTCTCA
8261780 TT-TCATTCATTATT
1 TTCTCATTCATTATT
8261794 GACATCCCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
40 10 0.20
41 2 0.04
43 1 0.02
44 6 0.12
45 12 0.24
46 19 0.38
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (45 bp):
TTCTCATTCATTATTATTCTTTTTCCTTTTCATTTCTTTTTCTCA
Found at i:8277657 original size:61 final size:60
Alignment explanation
Indices: 8277567--8277714 Score: 165
Period size: 60 Copynumber: 2.4 Consensus size: 60
8277557 CCTTCAATAA
* * **
8277567 TAAAAAAATTGGAAGAGCATTATTCAAGGTATTTTTAGGCAAAAAAGC-CTTG-AATAATCTT
1 TAAAAAAATTGG-AGGGGATTATTCAAGGTATTTTTA-GCAAAAAA-CACTTGAAATAATCCC
* * *
8277628 TAAAAAAAATTGGAGGGGATTATTGAAGGTGTTTTTAGCCAAAAACACTTGAAATAATCCC
1 T-AAAAAAATTGGAGGGGATTATTCAAGGTATTTTTAGCAAAAAACACTTGAAATAATCCC
* *
8277689 TAAAAAAATCGAAGGGGATTATTCAA
1 TAAAAAAATTGGAGGGGATTATTCAA
8277715 TGCATGTTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 1 0.01
60 33 0.45
61 29 0.39
62 11 0.15
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.28
Consensus pattern (60 bp):
TAAAAAAATTGGAGGGGATTATTCAAGGTATTTTTAGCAAAAAACACTTGAAATAATCCC
Found at i:8277744 original size:60 final size:61
Alignment explanation
Indices: 8277527--8277744 Score: 166
Period size: 61 Copynumber: 3.7 Consensus size: 61
8277517 TTTATGAGGA
* * * * * *
8277527 GATTATTCAAGATGTTTTCT-GCAAAAAATGCCTTCAATAA----TAAAAAAATTGGAAGAG
1 GATTATTCAAGATGTTTT-TAGCCAAAAACGCCTTGAATAATCCCTAAAAAAAATCGAAGGG
* * * * * ** * *
8277584 CATTATTCAAGGTATTTTTAGGCAAAAAAGCCTTGAATAATCTTTAAAAAAAATTGGAGGG
1 GATTATTCAAGATGTTTTTAGCCAAAAACGCCTTGAATAATCCCTAAAAAAAATCGAAGGG
* * *
8277645 GATTATTGAAGGTGTTTTTAGCCAAAAAC-ACTTGAAATAATCCCT-AAAAAAATCGAAGGG
1 GATTATTCAAGATGTTTTTAGCCAAAAACGCCTTG-AATAATCCCTAAAAAAAATCGAAGGG
*
8277705 GATTATTCAATGCATG-TTTT-GCCAGAAACGCCTTGAATAA
1 GATTATTCAA-G-ATGTTTTTAGCCAAAAACGCCTTGAATAA
8277745 CCCCATTCAA
Statistics
Matches: 127, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
56 1 0.01
57 31 0.24
60 39 0.31
61 54 0.43
62 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.30
Consensus pattern (61 bp):
GATTATTCAAGATGTTTTTAGCCAAAAACGCCTTGAATAATCCCTAAAAAAAATCGAAGGG
Found at i:8277836 original size:184 final size:183
Alignment explanation
Indices: 8277598--8278175 Score: 570
Period size: 183 Copynumber: 3.2 Consensus size: 183
8277588 ATTCAAGGTA
* * * *
8277598 TTTTTAGG-CAAAAAAGCCTTGAATAATCTT-TAAAAAAAATTGGAGGGGATTATTGAAGG-TGT
1 TTTTTTGGCCAAAAACGCCTTGAATAAT-TTCAAAAAAAAATTGGAGGGGATTATTGAAGGCTAT
* * *
8277660 TTTTAGCCAAAAACACTTGAAATAATCCCTAAAAAAATCGAAGGGGATTATTCAATGCATGTTTT
65 TTTTAGCCAAAAACACTTGAAATAATCCCAAAAAAAAT-GAAAGGGATTATTCAA-GCATTTTTT
*
8277725 GCCAGAAACGCCTTGAATAACCCCATTCAA-TTTTTGTAAGGGAATATTGAAGACC
128 GCCAGAAACGCCTTGAATAACCCCATTCAATTTTTTGTAAGGGAATATTCAAGACC
** ** *
8277780 TTTTTT-GCCTAAAATTGCCTTGAATAATTTCAAAAAAAAAAGGGGAGGGGATTATTGAAGGCTT
1 TTTTTTGGCC-AAAAACGCCTTGAATAATTTC-AAAAAAAAATTGGAGGGGATTATTGAAGGCTA
*
8277844 TTTTTA--CAGAAAACACCTT-AAATAATCCCCAAAAAAATGAAAGGGATTATTCAAGGCATTTT
64 TTTTTAGCCA-AAAACA-CTTGAAATAATCCCAAAAAAAATGAAAGGGATTATTCAA-GCATTTT
* * * * ***
8277906 TTGCTAGAAACGCCTTGAATAACCCTATTCAATTTTTTGTAA-AGATTATTCAAGTTG
126 TTGCCAGAAACGCCTTGAATAACCCCATTCAATTTTTTGTAAGGGAATATTCAAGACC
* * * * * * * * *
8277963 TTTTTTGGCCAAAAACACTTTTAATAATCTCCCAAAAAAAATTAGAAGGGACTATTGAAGGCAAT
1 TTTTTTGGCCAAAAACGCCTTGAATAAT-TTCAAAAAAAAATTGGAGGGGATTATTGAAGGCTAT
*
8278028 TATT-GCCAAAAATGC-CTTG-AATAAT-CCAAAAAAAATGAAACGGGATTATTCAAGTCATTTT
65 TTTTAGCCAAAAA--CACTTGAAATAATCCCAAAAAAAATGAAA-GGGATTATTCAAG-CATTTT
* * * * * * *
8278089 TTGCCAGAAATGCCTTAAATAACGCCATTCAATTTTTTGTAAGGGATTGTTCAAGGCA
126 TTGCCAGAAACGCCTTGAATAACCCCATTCAATTTTTTGTAAGGGAATATTCAAGACC
* * * *
8278147 TTTTCTAGCCAAAAATGCCTTTAATAATT
1 TTTTTTGGCCAAAAACGCCTTGAATAATT
8278176 ACACTCTCTT
Statistics
Matches: 328, Mismatches: 50, Indels: 35
0.79 0.12 0.08
Matches are distributed among these distances:
181 1 0.00
182 23 0.07
183 194 0.59
184 99 0.30
185 11 0.03
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.32
Consensus pattern (183 bp):
TTTTTTGGCCAAAAACGCCTTGAATAATTTCAAAAAAAAATTGGAGGGGATTATTGAAGGCTATT
TTTAGCCAAAAACACTTGAAATAATCCCAAAAAAAATGAAAGGGATTATTCAAGCATTTTTTGCC
AGAAACGCCTTGAATAACCCCATTCAATTTTTTGTAAGGGAATATTCAAGACC
Found at i:8277927 original size:59 final size:59
Alignment explanation
Indices: 8277585--8278110 Score: 204
Period size: 61 Copynumber: 8.7 Consensus size: 59
8277575 TTGGAAGAGC
* * * * * *** * *
8277585 ATTATTCAAGGTATTTTTAGGCAAAAAAGCCTTGAATAATCTTTAAAAAAAATTGGAGGGG
1 ATTATTCAAGGCATTTTTTGCCAGAAACGCCTTGAATAATC-CCCAAAAAAA-TGAAAGGG
* ** * * * * *
8277646 ATTATTGAAGGTGTTTTTAGCCAAAAAC-ACTTGAAATAATCCCTAAAAAAATCGAAGGGG
1 ATTATTCAAGGCATTTTTTGCCAGAAACGCCTTG-AATAATCCCCAAAAAAAT-GAAAGGG
* * **** *
8277706 ATTATTCAATGCATGTTTTGCCAGAAACGCCTTGAATAA-CCCCATTCAATTTTTGTAAGGG
1 ATTATTCAAGGCATTTTTTGCCAGAAACGCCTTGAATAATCCCCA---AAAAAATGAAAGGG
* * * * * *** * * *
8277767 AATATTGAAGACCTTTTTTGCCTA-AAATTGCCTTGAATAATTTCAAAAAAAAAAGGGGAGGGG
1 ATTATTCAAGGCATTTTTTGCC-AGAAA-CGCCTTGAATAA--TCCCCAAAAAAA-TGAAAGGG
* ** * *
8277830 ATTATTGAAGGC-TTTTTTTACAGAAAACACCTTAAATAATCCCCAAAAAAATGAAAGGG
1 ATTATTCAAGGCATTTTTTGCCAG-AAACGCCTTGAATAATCCCCAAAAAAATGAAAGGG
* *****
8277889 ATTATTCAAGGCATTTTTTGCTAGAAACGCCTTGAATAA-CCCTATTCAATTTTTTGTAAA--G
1 ATTATTCAAGGCATTTTTTGCCAGAAACGCCTTGAATAATCCC----CAAAAAAATG-AAAGGG
*** * * * * *
8277950 ATTATTCAAGTTGTTTTTTGGCCAAAAACACTTTTAATAATCTCCCAAAAAAAATTAGAAGGG
1 ATTATTCAAGGCATTTTTT-GCCAGAAACGCCTTGAATAATC-CCC-AAAAAAATGA-AAGGG
* * * * * * *
8278013 ACTATTGAAGGCAATTATTGCCAAAAATGCCTTGAATAAT-CCAAAAAAAATGAAACGGG
1 ATTATTCAAGGCATTTTTTGCCAGAAACGCCTTGAATAATCCCCAAAAAAATGAAA-GGG
* * *
8278072 ATTATTCAAGTCATTTTTTGCCAGAAATGCCTTAAATAA
1 ATTATTCAAGGCATTTTTTGCCAGAAACGCCTTGAATAA
8278111 CGCCATTCAA
Statistics
Matches: 338, Mismatches: 99, Indels: 58
0.68 0.20 0.12
Matches are distributed among these distances:
58 5 0.01
59 78 0.23
60 64 0.19
61 82 0.24
62 70 0.21
63 35 0.10
64 2 0.01
65 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (59 bp):
ATTATTCAAGGCATTTTTTGCCAGAAACGCCTTGAATAATCCCCAAAAAAATGAAAGGG
Found at i:8279258 original size:33 final size:34
Alignment explanation
Indices: 8279221--8279309 Score: 119
Period size: 33 Copynumber: 2.6 Consensus size: 34
8279211 GTAACAGCAC
8279221 TTTCTGCTATAAATGCTGCTAAATTTAGTGGCA-
1 TTTCTGCTATAAATGCTGCTAAATTTAGTGGCAT
*
8279254 TTTCTACTATAAATGCCT-CTAAATTTAGTGGCAT
1 TTTCTGCTATAAATG-CTGCTAAATTTAGTGGCAT
* * *
8279288 TTTGTGATAAAAATGCTGCTAA
1 TTTCTGCTATAAATGCTGCTAA
8279310 GTTGGTGATG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
33 31 0.65
34 17 0.35
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (34 bp):
TTTCTGCTATAAATGCTGCTAAATTTAGTGGCAT
Found at i:8283392 original size:26 final size:24
Alignment explanation
Indices: 8283363--8283410 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 24
8283353 TTTTAATTAA
8283363 TTATTTAATTATATATATTTATATAT
1 TTATTTAATT-T-TATATTTATATAT
8283389 TTATTTAATTTTATATTTATAT
1 TTATTTAATTTTATATTTATAT
8283411 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.50
25 1 0.05
26 10 0.45
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (24 bp):
TTATTTAATTTTATATTTATATAT
Found at i:8283405 original size:12 final size:12
Alignment explanation
Indices: 8283364--8283431 Score: 50
Period size: 12 Copynumber: 5.6 Consensus size: 12
8283354 TTTAATTAAT
8283364 TATTTAATTATATA
1 TATTTAATT-T-TA
*
8283378 TATTTATATATT-
1 TATTTA-ATTTTA
8283390 TATTTAATTTTA
1 TATTTAATTTTA
*
8283402 TATTT-ATATTA
1 TATTTAATTTTA
* **
8283413 AAAATAATTTTA
1 TATTTAATTTTA
8283425 TATTTAA
1 TATTTAA
8283432 AAAATAATAT
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
11 11 0.27
12 20 0.49
13 1 0.02
14 7 0.17
15 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTTAATTTTA
Found at i:8283424 original size:23 final size:23
Alignment explanation
Indices: 8283394--8283466 Score: 77
Period size: 19 Copynumber: 3.3 Consensus size: 23
8283384 TATATTTATT
8283394 TAATTTTATATTTATATTAAAAA
1 TAATTTTATATTTATATTAAAAA
8283417 TAATTTTATA-TT-TA--AAAAA
1 TAATTTTATATTTATATTAAAAA
*
8283436 TAATATT-T-TTTATATTTAAAAA
1 TAATTTTATATTTATA-TTAAAAA
8283458 TAATATTTA
1 TAAT-TTTA
8283467 ATTAATTTCA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
18 3 0.07
19 13 0.32
21 2 0.05
22 11 0.27
23 12 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TAATTTTATATTTATATTAAAAA
Found at i:8283445 original size:22 final size:22
Alignment explanation
Indices: 8283397--8283465 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 22
8283387 ATTTATTTAA
* *
8283397 TTTTATATTTATATTAAA-AATAA
1 TTTTATATTTA-A-AAAATAATAT
8283420 TTTTATATTTAAAAAATAATATT
1 TTTTATATTTAAAAAATAATA-T
8283443 TTTTATATTT-AAAAATAATAT
1 TTTTATATTTAAAAAATAATAT
8283464 TT
1 TT
8283466 AATTAATTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.14
22 15 0.36
23 21 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTTATATTTAAAAAATAATAT
Found at i:8283474 original size:22 final size:21
Alignment explanation
Indices: 8283410--8283474 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
8283400 TATATTTATA
8283410 TTAAAAATAAT-TTTA-T-AT
1 TTAAAAATAATATTTATTAAT
*
8283428 TTAAAAAATAATATTTTTTATAT
1 TT-AAAAATAATATTTATTA-AT
8283451 TTAAAAATAATATTTAATTAAT
1 TTAAAAATAATATTT-ATTAAT
8283473 TT
1 TT
8283475 CATGTCAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 2 0.05
19 9 0.23
20 3 0.08
21 1 0.03
22 17 0.44
23 7 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTAAAAATAATATTTATTAAT
Found at i:8288010 original size:37 final size:39
Alignment explanation
Indices: 8287945--8288020 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 39
8287935 ACTCATTTAA
* * *
8287945 CTAGAAATGGACTAAAATTGGACTTTGGC-TATGCAATT
1 CTAGAAATGGACTAAAATTGAACATTGGCTTATACAATT
*
8287983 CTAGAATTGGACT-AAATTGAACATTGGCTTATACAATT
1 CTAGAAATGGACTAAAATTGAACATTGGCTTATACAATT
8288021 AAGCCCTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 13 0.39
38 20 0.61
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (39 bp):
CTAGAAATGGACTAAAATTGAACATTGGCTTATACAATT
Found at i:8291479 original size:9 final size:9
Alignment explanation
Indices: 8291465--8291491 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8291455 ATATGAATGG
8291465 ATTTTAAAA
1 ATTTTAAAA
8291474 ATTTTAAAA
1 ATTTTAAAA
8291483 ATTTTAAAA
1 ATTTTAAAA
8291492 GGTGATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:8291835 original size:17 final size:17
Alignment explanation
Indices: 8291809--8291842 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8291799 AAGTGAAATT
8291809 AAAAAAACAAA-AAGAG
1 AAAAAAACAAAGAAGAG
8291825 AAAAGAAACAAAGAAGAG
1 AAAA-AAACAAAGAAGAG
8291843 GTAAGGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.76, C:0.06, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAGAAGAG
Found at i:8294058 original size:19 final size:19
Alignment explanation
Indices: 8294017--8294073 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
8294007 AGTTTTTAGA
8294017 GTTTTGAGTTTCACCTATA-
1 GTTTTGAGTTTCACCTA-AG
8294036 G-TTTGAGGTTTCACCTAAG
1 GTTTTGA-GTTTCACCTAAG
*
8294055 GTTTTGAATTTCACCTAAG
1 GTTTTGAGTTTCACCTAAG
8294074 ATTTAGGGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
18 6 0.18
19 23 0.68
20 5 0.15
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (19 bp):
GTTTTGAGTTTCACCTAAG
Found at i:8294085 original size:19 final size:17
Alignment explanation
Indices: 8294019--8294085 Score: 53
Period size: 19 Copynumber: 3.6 Consensus size: 17
8294009 TTTTTAGAGT
*
8294019 TTTGAGTTTCACCTATAG
1 TTTGGGTTTCACCTA-AG
8294037 TTTGAGGTTTCACCTAAGG
1 TTTG-GGTTTCACCTAA-G
**
8294056 TTTTGAATTTCACCTAAG
1 -TTTGGGTTTCACCTAAG
8294074 ATTTAGGGTTTC
1 -TTT-GGGTTTC
8294086 CTTTTAGGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
18 9 0.23
19 26 0.67
20 4 0.10
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.43
Consensus pattern (17 bp):
TTTGGGTTTCACCTAAG
Found at i:8294095 original size:38 final size:39
Alignment explanation
Indices: 8294010--8294097 Score: 94
Period size: 38 Copynumber: 2.3 Consensus size: 39
8294000 GCTTTGGAGT
*
8294010 TTTTAGAGTTTTGAGTTTCACCTATAGTTTGAGGTTTCAC
1 TTTTAG-GTTTTGAATTTCACCTATAGTTTGAGGTTTCAC
* *
8294050 -CTAAGGTTTTGAATTTCACCTA-AGATTT-AGGGTTTC-C
1 TTTTAGGTTTTGAATTTCACCTATAG-TTTGA-GGTTTCAC
8294087 TTTTAGGTTTT
1 TTTTAGGTTTT
8294098 TATTTTAGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
37 4 0.10
38 33 0.82
39 3 0.08
ACGTcount: A:0.20, C:0.12, G:0.19, T:0.48
Consensus pattern (39 bp):
TTTTAGGTTTTGAATTTCACCTATAGTTTGAGGTTTCAC
Found at i:8294276 original size:3 final size:3
Alignment explanation
Indices: 8294268--8294326 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
8294258 CAAAACACTA
8294268 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8294316 ATT ATT ATT AT
1 ATT ATT ATT AT
8294327 ACTTTTCTCC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8294377 original size:22 final size:22
Alignment explanation
Indices: 8294349--8294399 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
8294339 TTCATTAAAA
8294349 TTATTATT-TTATTTACTTACT-T
1 TTATTATTCTTATTT--TTACTAT
8294371 TTATTATTCTTATTTTTACTAT
1 TTATTATTCTTATTTTTACTAT
8294393 TTATTAT
1 TTATTAT
8294400 GTAATAATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.19
22 16 0.59
23 6 0.22
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.69
Consensus pattern (22 bp):
TTATTATTCTTATTTTTACTAT
Found at i:8295797 original size:11 final size:11
Alignment explanation
Indices: 8295781--8295805 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8295771 TGGTTTACAC
8295781 TTTCATCAATT
1 TTTCATCAATT
8295792 TTTCATCAATT
1 TTTCATCAATT
8295803 TTT
1 TTT
8295806 TTCTTTTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTCATCAATT
Found at i:8299496 original size:17 final size:17
Alignment explanation
Indices: 8299455--8299498 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
8299445 TAATTTTTTG
*
8299455 ATTTTTTTAAAATATCA
1 ATTTTTTTACAATATCA
* * *
8299472 ATTCTTTTACAATGTCT
1 ATTTTTTTACAATATCA
8299489 ATTTTTTTAC
1 ATTTTTTTAC
8299499 CATGAAATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.30, C:0.11, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTTTTACAATATCA
Found at i:8300430 original size:20 final size:20
Alignment explanation
Indices: 8300405--8300442 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8300395 AAAAATAATT
8300405 AATTTAAATT-TTACATTATG
1 AATTT-AATTATTACATTATG
8300425 AATTTAATTATTACATTA
1 AATTTAATTATTACATTA
8300443 AAATATTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (20 bp):
AATTTAATTATTACATTATG
Found at i:8310665 original size:14 final size:12
Alignment explanation
Indices: 8310629--8310688 Score: 68
Period size: 13 Copynumber: 4.8 Consensus size: 12
8310619 CTCCATTCTC
8310629 TTTTTATTTTAT
1 TTTTTATTTTAT
*
8310641 TTTAT-TTTTAT
1 TTTTTATTTTAT
8310652 GTGTTTTATTTTAT
1 -T-TTTTATTTTAT
8310666 TATTTTATTATTAT
1 T-TTTTATT-TTAT
8310680 TTTTTATTT
1 TTTTTATTT
8310689 GATAAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
11 6 0.15
12 6 0.15
13 18 0.44
14 11 0.27
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.78
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:8310679 original size:28 final size:26
Alignment explanation
Indices: 8310637--8310688 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
8310627 TCTTTTTATT
*
8310637 TTATTTTATTTTTATGTGTTTTATTTTA
1 TTATTTTATTATTAT-T-TTTTATTTTA
8310665 TTATTTTATTATTATTTTTTATTT
1 TTATTTTATTATTATTTTTTATTT
8310689 GATAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 8 0.35
27 1 0.04
28 14 0.61
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (26 bp):
TTATTTTATTATTATTTTTTATTTTA
Found at i:8310683 original size:25 final size:26
Alignment explanation
Indices: 8310629--8310688 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 26
8310619 CTCCATTCTC
*
8310629 TTTTTATTTTATTTTATTTTTATG-T
1 TTTTTATTTTATTTTATTATTATGTT
*
8310654 GTTTTATTTTATTATT-TTATTAT-TAT
1 TTTTTATTTTATT-TTATTATTATGT-T
8310680 TTTTTATTT
1 TTTTTATTT
8310689 GATAAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 18 0.62
26 11 0.38
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.78
Consensus pattern (26 bp):
TTTTTATTTTATTTTATTATTATGTT
Found at i:8316913 original size:25 final size:25
Alignment explanation
Indices: 8316880--8316928 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8316870 AAAAAAATCC
*
8316880 AAATCTGATATTGATGGCCTAAATT
1 AAATCTGATATTGATGGCCCAAATT
*
8316905 AAATTTGATATTGATGGCCCAAAT
1 AAATCTGATATTGATGGCCCAAAT
8316929 GCAATCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (25 bp):
AAATCTGATATTGATGGCCCAAATT
Found at i:8317351 original size:31 final size:31
Alignment explanation
Indices: 8317307--8317376 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
8317297 CAACATGAAG
*
8317307 CACCAACCCTAGCACCACCC-TAAACACCAA
1 CACCAACACTAGCACCACCCTTAAACACCAA
*
8317337 CACCAAGCACTAGCACCACCCTTAAGCACCATA
1 CACCAA-CACTAGCACCACCCTTAAACACCA-A
8317370 C-CCAACA
1 CACCAACA
8317377 ACCTTGGCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 6 0.17
31 15 0.43
32 12 0.34
33 2 0.06
ACGTcount: A:0.39, C:0.47, G:0.06, T:0.09
Consensus pattern (31 bp):
CACCAACACTAGCACCACCCTTAAACACCAA
Found at i:8317689 original size:14 final size:14
Alignment explanation
Indices: 8317670--8317700 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8317660 TCGCATAAAA
*
8317670 AAATTATAAATGTT
1 AAATTACAAATGTT
8317684 AAATTACAAATGTT
1 AAATTACAAATGTT
8317698 AAA
1 AAA
8317701 GTTAGGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (14 bp):
AAATTACAAATGTT
Found at i:8319291 original size:20 final size:18
Alignment explanation
Indices: 8319262--8319304 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
8319252 TTGACTCAAA
*
8319262 AATTATTTTTAATGAATTTT
1 AATTAATTTTAA-G-ATTTT
8319282 AATTAATTTTAAGATTTT
1 AATTAATTTTAAGATTTT
8319300 -ATTAA
1 AATTAA
8319305 AAATGTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 5 0.23
18 5 0.23
19 1 0.05
20 11 0.50
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
AATTAATTTTAAGATTTT
Found at i:8320216 original size:371 final size:371
Alignment explanation
Indices: 8319527--8320692 Score: 1530
Period size: 371 Copynumber: 3.1 Consensus size: 371
8319517 GACCTAAGGA
* *
8319527 AGACCTAAAGAAGAGTCCTGAGTCCCACATCGAACATAATAGGAGGGTCCCTGGGGTATAAAAGG
1 AGACCTAAAGAGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGTATAAAAGG
* * *
8319592 GTTCACACCACCTCCGTCTTGTGAGGCACCTTTTGTAGGACAAAACCATGAGGCTATA-GGGGCT
66 GTTCACACCACCTCCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCTA-AGGGGGCC
*
8319656 AGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAAGAAGGCTGATCTGGGACGTCGGAAGG
130 AGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAAGAAGGCTGATCTGGGACGTCGAAAGG
* * *
8319721 GTGAATGCACGAGTCCCAGAGTCGTGCGGGTTCGG-AGCTTAAGTCTCGACCCGTGACAAGTGGT
195 GTGAATGCCCGGGTCCCAGAGCCGTGCGGGTT-GGAAGCTTAAGTCTCGACCCGTGACAAGTGGT
* * * * *
8319785 GTCAGAGCCAGCCCTAAATCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAAGCAGGGTGGCC
259 ATCAGAGCCAGCCCTATACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAGGCAGGGTGGTC
* * *
8319850 AGCCTCCGTGACGAGGACGTCACGAGATTGGGTGCGAGAGAATGTCAC
324 AGCCTCCGTGACGAGGGCATCACGAGGTTGGGTGCGAGAGAATGTCAC
* *
8319898 AGACCTAAAGAGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGG
1 AGACCTAAAGAGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGTATAAAAGG
* * ** *
8319963 GTTCACAACATCTCCGCCTTGTGAGGCGTCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGCCA
66 GTTCACACCACCTCCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCTAAGGGGGCCA
* * * * * * * * *
8320028 AAGCAGATAATACCTCACAAGGGTGTGAACCATGGTAGGAAGGCTAATCTAGGACGTTGAAAGGG
131 GAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAAGAAGGCTGATCTGGGACGTCGAAAGGG
* * * * *
8320093 TGAATGCCCGGGTCCCAGAGCCGCGCGGGTTGGAAGCATAAGTTTCGACTCGTGACAAATGGTAT
196 TGAATGCCCGGGTCCCAGAGCCGTGCGGGTTGGAAGCTTAAGTCTCGACCCGTGACAAGTGGTAT
* * ** *
8320158 TAGAGCCAGCCTTATACCGTTCGATCCACGCCAAGTGCCTCGAGAGAGGTAGGCAGGGTGGTCAG
261 CAGAGCCAGCCCTATACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAG
*
8320223 CCTCCGTGATGAGGGCATCACGAGGTTGGGTGCGAGAGAATGTCAC
326 CCTCCGTGACGAGGGCATCACGAGGTTGGGTGCGAGAGAATGTCAC
* * * *
8320269 GGACCTAAGGAAGACCTAAGAAAGAGTCCTGAGTCTCACATCGAACATAATAGGAGGGTCCCTAG
1 AGACCT-A--AAG-----AG---GAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGG
* *
8320334 GGTATAAAAGGGTTCACACCACCTCCGCCTTATGAGGCACCTTTTGTAGGACAAAACCGTGATGC
55 GGTATAAAAGGGTTCACACCACCTCCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGC
* * * *
8320399 TAGGGAGGGTCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGACAAGAAGGTTGATCTGGG
120 TAAGG-GGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAAGAAGGCTGATCTGGG
* * * * ** *
8320464 ATGTCAAAATGGTGAATGCCCAGGTTTCAGAGCCGTGCGGGTT-CAGAGCTTAAGTCTCGACCCG
184 ACGTCGAAAGGGTGAATGCCCGGGTCCCAGAGCCGTGCGGGTTGGA-AGCTTAAGTCTCGACCCG
* * * *
8320528 TGACAAGTGGTATCAGAGCCAACCCTATACCGTTCGATCCACGTCAAGCACCTCAAAGGGAGGCA
248 TGACAAGTGGTATCAGAGCCAGCCCTATACCGTTCGATCCACGCCAAGCACCTC-GAGGGAGGTA
*
8320593 GGCAGGGTGGTCAGCCTTCGTGACGAGGGCATCACGAGGTTGGGTGCGAGAGAATGTCAC
312 GGCAGGGTGGTCAGCCTCCGTGACGAGGGCATCACGAGGTTGGGTGCGAGAGAATGTCAC
* * *
8320653 -GAACCTAAGGGGGAGTCCTGAATCCCACATCAAACATAAT
1 AG-ACCTAAAGAGGAGTCCTGAATCCCACATCGAACATAAT
8320693 CGTGACAAGT
Statistics
Matches: 680, Mismatches: 98, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
370 3 0.00
371 327 0.48
372 1 0.00
373 25 0.04
374 3 0.00
376 1 0.00
379 2 0.00
381 2 0.00
382 100 0.15
383 147 0.22
384 69 0.10
ACGTcount: A:0.28, C:0.23, G:0.30, T:0.19
Consensus pattern (371 bp):
AGACCTAAAGAGGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGTATAAAAGG
GTTCACACCACCTCCGCCTTGTGAGGCACCTTTTGTAGGACAAAACCGTGAGGCTAAGGGGGCCA
GAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAAGAAGGCTGATCTGGGACGTCGAAAGGG
TGAATGCCCGGGTCCCAGAGCCGTGCGGGTTGGAAGCTTAAGTCTCGACCCGTGACAAGTGGTAT
CAGAGCCAGCCCTATACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAGGCAGGGTGGTCAG
CCTCCGTGACGAGGGCATCACGAGGTTGGGTGCGAGAGAATGTCAC
Found at i:8320801 original size:166 final size:167
Alignment explanation
Indices: 8320526--8320858 Score: 506
Period size: 166 Copynumber: 2.0 Consensus size: 167
8320516 AGTCTCGACC
* * *
8320526 CGTGACAAGTGGTATCAGAGCCAACCCTATACCGTTCGATCCACGTCAAGCACCTCAAAGGGAGG
1 CGTGACAAGTGGTATCAGAGCCAACCCTAAACCGTTCGATCCACGCCAAGCACCTCAAAGAGAGG
* * * *
8320591 CAGGCAGGGTGGTCAGCCTTCGTGACGAGGGCATCACGAGGTTGGGTGCGAGAGAATGTCACGAA
66 CAGGCAGGGTGGCCAGCCTCCGTGACGAGGACATCACGAGGTTGGGTGCGAGAGAATGTCACAAA
***
8320656 CCTAAGGGGGAGTCCTGAATCCCACATCAAACATAAT
131 CCTAAGAAAGAGTCCTGAATCCCACATCAAACATAAT
* * * * *
8320693 CGTGACAAGTGGTATCAGAGCTAGCCCTAAACCGTTTGATCCATGCCAAGCACCTC-GAGAGAGG
1 CGTGACAAGTGGTATCAGAGCCAACCCTAAACCGTTCGATCCACGCCAAGCACCTCAAAGAGAGG
* *
8320757 TAGGCAGGGTGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGAGAGAATGTCACAAA
66 CAGGCAGGGTGGCCAGCCTCCGTGACGAGGACATCACGAGGTTGGGTGCGAGAGAATGTCACAAA
8320822 CCTAAGAAAGAGTCCTGAATCCCACATCAAACATAAT
131 CCTAAGAAAGAGTCCTGAATCCCACATCAAACATAAT
8320859 AGGAGGGTCA
Statistics
Matches: 149, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
166 99 0.66
167 50 0.34
ACGTcount: A:0.29, C:0.25, G:0.29, T:0.17
Consensus pattern (167 bp):
CGTGACAAGTGGTATCAGAGCCAACCCTAAACCGTTCGATCCACGCCAAGCACCTCAAAGAGAGG
CAGGCAGGGTGGCCAGCCTCCGTGACGAGGACATCACGAGGTTGGGTGCGAGAGAATGTCACAAA
CCTAAGAAAGAGTCCTGAATCCCACATCAAACATAAT
Found at i:8321384 original size:370 final size:368
Alignment explanation
Indices: 8320693--8321811 Score: 1451
Period size: 371 Copynumber: 3.0 Consensus size: 368
8320683 CAAACATAAT
* * * *
8320693 CGTGACAAGTGGTATCAGAGCTAGCCCTAAACCGTTTGATCCATGCCAAGCACCTCGAGAGAGGT
1 CGTGACAAATGGTATCAGAGCCAGCCCTAAACCGTTCGATCCATGCCAAGCACCTCGAGGGAGGT
** *
8320758 AGGCAGGGTGGCCAGCCTCCGTGACGAGGACGTCACGAGGTTGGGTGCGAGAGAATGTCACAAAC
66 AGGCAGGGTGGCCAGCCTCCGTGACGAGGGTGTCACGAGATTGGGTGCGAGAGAATGTCA-AAAC
* *
8320823 CTAAGAAAGAGTCCTGAATCCCACATCAAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTC
130 CTAAG-AAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
* * * *
8320888 ACACCACCT-TCGCCTTGTGAGGCACCTTTTGTAGGATAAAATCGTGAGGCTAGGGGGGCCAGAA
194 ACACCATCTCT-GCCTTGTGAGGCACCTTTTGTAGGACAAAATCGTGAGGCCAGGGGGGCCAGAG
* * * * * * **
8320952 TGGACAATACCTCACAATGGTGTGAATTATGGCAAAAAAGTTGATCTGGGACACCGGAAGGGTGA
258 CGGACAATACCTCACAAAGGTGTGAA-TGTGGCAGAAAGGCTGATCTGGGATGCCGGAAGGGTGA
* *
8321017 ATGCTCGGGCCTCAGAGCCGTGCGGGTTCAGAGCTTAAGTCTCGACC
322 ATGCCCGGGCCTCAGAGCCGTGTGGGTTCAGAGCTTAAGTCTCGACC
* * *
8321064 TGTGATAAATGGTATCAGAGCCAGCCCTAAATCGTTCGATCCATGCCAAGCACCTCGAGGGAGGT
1 CGTGACAAATGGTATCAGAGCCAGCCCTAAACCGTTCGATCCATGCCAAGCACCTCGAGGGAGGT
*
8321129 -GGCAGGGTGGCCAGCCTCCGTGACGAGGGTGTCACGAGATTGGGTGCGAGAGAATGTCATGAAC
66 AGGCAGGGTGGCCAGCCTCCGTGACGAGGGTGTCACGAGATTGGGTGCGAGAGAATGTCA-AAAC
* *
8321193 CTAAGGAAGAGTCCTGAATCTCACATTGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
130 CTAA-GAAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTC
* * * ** *
8321258 ACAACATCTCTGCCTTGTGAGACGCCTTTTGTAGGACAAAATCGTGAGGCCAAAGGGGTCAGAGC
194 ACACCATCTCTGCCTTGTGAGGCACCTTTTGTAGGACAAAATCGTGAGGCCAGGGGGGCCAGAGC
* *
8321323 GGACAATACCTCACAAGGGTGTGAACTGTGGCAGAAAGGCTGATCTGGGATGTCGGAAGGGTGAA
259 GGACAATACCTCACAAAGGTGTGAA-TGTGGCAGAAAGGCTGATCTGGGATGCCGGAAGGGTGAA
* *
8321388 TGCCCAGGTCC-CAGAGCCGTGTGAGTTC-GAAGCTTAAGTCTCGACC
323 TGCCC-GGGCCTCAGAGCCGTGTGGGTTCAG-AGCTTAAGTCTCGACC
* * * * * ** * *
8321434 CGTGACAAGTGGTATCAGAGCCAGCCTTATACCATTCGATCCACGCCAAGCGTCTCAAGGGAGAT
1 CGTGACAAATGGTATCAGAGCCAGCCCTAAACCGTTCGATCCATGCCAAGCACCTCGAGGGAGGT
* * * * *
8321499 AGGCAGGGTGGACAACCTCCGTGATGAGGGTGTCACGAGATTGGGTGCG-GAAAAATGTCACAGA
66 AGGCAGGGTGGCCAGCCTCCGTGACGAGGGTGTCACGAGATTGGGTGCGAG-AGAATGTCA-AAA
* * *
8321563 CCTAA-AAGGGTGTCTTAAATCCCACATCGAACATAATAGG-AGTGTCACTGGGGTATAAAAGGG
129 CCTAAGAA--GAGTCCTGAATCCCACATCGAACATAATAGGAAG-GTCACTGGGGTATAAAAGGG
*
8321626 TTCATACCATCTCTGCCTTGTGAGGCACCTTTTGTAGGACAAAATCGTGAGGCCAGGGGGGCCAG
191 TTCACACCATCTCTGCCTTGTGAGGCACCTTTTGTAGGACAAAATCGTGAGGCCAGGGGGGCCAG
* * * * *
8321691 AGCGGACAATACCTCACAAAGGTGTGAATCGTGGTAGGAAGGCTAATCTGAGATGCCGAAAGGGT
256 AGCGGACAATACCTCACAAAGGTGTGAAT-GTGGCAGAAAGGCTGATCTGGGATGCCGGAAGGGT
* * * * *
8321756 GAATACCCGGGTCTCGGAGTCGCGTGGGTTCAGAGCTTAAGTCTCGACC
320 GAATGCCCGGGCCTCAGAGCCGTGTGGGTTCAGAGCTTAAGTCTCGACC
8321805 CGTGACA
1 CGTGACA
8321812 CGTAAACGTG
Statistics
Matches: 651, Mismatches: 85, Indels: 24
0.86 0.11 0.03
Matches are distributed among these distances:
369 3 0.00
370 321 0.49
371 326 0.50
372 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (368 bp):
CGTGACAAATGGTATCAGAGCCAGCCCTAAACCGTTCGATCCATGCCAAGCACCTCGAGGGAGGT
AGGCAGGGTGGCCAGCCTCCGTGACGAGGGTGTCACGAGATTGGGTGCGAGAGAATGTCAAAACC
TAAGAAGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGGTATAAAAGGGTTCAC
ACCATCTCTGCCTTGTGAGGCACCTTTTGTAGGACAAAATCGTGAGGCCAGGGGGGCCAGAGCGG
ACAATACCTCACAAAGGTGTGAATGTGGCAGAAAGGCTGATCTGGGATGCCGGAAGGGTGAATGC
CCGGGCCTCAGAGCCGTGTGGGTTCAGAGCTTAAGTCTCGACC
Found at i:8323498 original size:3 final size:3
Alignment explanation
Indices: 8323492--8323525 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8323482 AAAGAAGATA
8323492 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
8323526 ACACATTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:8324643 original size:22 final size:21
Alignment explanation
Indices: 8324618--8324661 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
8324608 GGGGATCAAT
8324618 CCTATCAAGGGGTAATCGATCC
1 CCTA-CAAGGGGTAATCGATCC
* *
8324640 CCTACATGGGGTGATCGATCC
1 CCTACAAGGGGTAATCGATCC
8324661 C
1 C
8324662 TTCTTCAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (21 bp):
CCTACAAGGGGTAATCGATCC
Found at i:8327843 original size:20 final size:19
Alignment explanation
Indices: 8327814--8327851 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8327804 ATGGATTTTT
*
8327814 TATGATGTTTTATGGATGC
1 TATGATGTTTGATGGATGC
8327833 TATGAATGTTTGATGGATG
1 TATG-ATGTTTGATGGATG
8327852 TTTACGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.24, C:0.03, G:0.29, T:0.45
Consensus pattern (19 bp):
TATGATGTTTGATGGATGC
Found at i:8327869 original size:41 final size:44
Alignment explanation
Indices: 8327780--8327871 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 44
8327770 TATTTGATGG
* *
8327780 ATGGATGCTATGAATGTTTTCTGGATGGATTTTTTATGATGTTTT
1 ATGGATGCTATGAATG-TTTCTGGATGGATTGTTTACGATGTTTT
8327825 ATGGATGCTATGAATG-TT-T-GATGGA-TGTTTACGATGTTTAT
1 ATGGATGCTATGAATGTTTCTGGATGGATTGTTTACGATGTTT-T
8327866 ATGGAT
1 ATGGAT
8327872 TTGATATTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
40 12 0.27
41 13 0.30
42 1 0.02
43 2 0.05
45 16 0.36
ACGTcount: A:0.23, C:0.04, G:0.26, T:0.47
Consensus pattern (44 bp):
ATGGATGCTATGAATGTTTCTGGATGGATTGTTTACGATGTTTT
Found at i:8339593 original size:63 final size:60
Alignment explanation
Indices: 8339494--8339706 Score: 187
Period size: 60 Copynumber: 3.5 Consensus size: 60
8339484 AATAGAAATA
* *
8339494 GATTATTCAAGGCATTTTTGGCCAAAAACACCTTGAATAACCCCATTCAATTTTTTGTAAAG
1 GATTATTCAAAGCATTTTTTGCCAAAAACACCTTGAATAA-CCCATTCAA-TTTTTGTAAAG
* ** *** * *
8339556 GATTATTCAAAGCATTTTCTTGCCAAAAACACCTTGAATAATCC-TAGAA-AAATGGAAGGG
1 GATTATTCAAAGCATTTT-TTGCCAAAAACACCTTGAATAACCCATTCAATTTTTGTAA-AG
* * **
8339616 GATTATTCAAAGCATTTTCTAGTCAAAAATGCCTTGAATAATCCCATTCAACTTTTTGTAAAG
1 GATTATTCAAAGCATTTT-TTGCCAAAAACACCTTGAATAA-CCCATTCAA-TTTTTGTAAAG
* * * *
8339679 AATTATTCAAGGCGTTTTTTACCAAAAA
1 GATTATTCAAAGCATTTTTTGCCAAAAA
8339707 TCGACTTGAA
Statistics
Matches: 117, Mismatches: 28, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
59 4 0.03
60 38 0.32
61 5 0.04
62 29 0.25
63 37 0.32
64 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (60 bp):
GATTATTCAAAGCATTTTTTGCCAAAAACACCTTGAATAACCCATTCAATTTTTGTAAAG
Found at i:8339634 original size:60 final size:59
Alignment explanation
Indices: 8339458--8339659 Score: 181
Period size: 60 Copynumber: 3.3 Consensus size: 59
8339448 TTTAGTAAAA
* * * * *
8339458 AAAAACACCTTGAATAATCCAAAAAAAATAGAAATAGATTATTCAAGGCATTTT-TGGCC
1 AAAAACACCTTGAATAATCCTAAAAAAATGGAAA-GGATTATTCAAAGCATTTTCTAGCC
* ***** * *
8339517 AAAAACACCTTGAATAACCCCATTCAATTTTTTGTAAAGGATTATTCAAAGCATTTTCTTGCC
1 AAAAACACCTTGAATAA-TCC--T-AAAAAAATGGAAAGGATTATTCAAAGCATTTTCTAGCC
* * *
8339580 AAAAACACCTTGAATAATCCTAGAAAAATGGAAGGGGATTATTCAAAGCATTTTCTAGTC
1 AAAAACACCTTGAATAATCCTAAAAAAATGGAA-AGGATTATTCAAAGCATTTTCTAGCC
**
8339640 AAAAATGCCTTGAATAATCC
1 AAAAACACCTTGAATAATCC
8339660 CATTCAACTT
Statistics
Matches: 112, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
59 22 0.20
60 44 0.39
62 19 0.17
63 27 0.24
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (59 bp):
AAAAACACCTTGAATAATCCTAAAAAAATGGAAAGGATTATTCAAAGCATTTTCTAGCC
Found at i:8339717 original size:123 final size:122
Alignment explanation
Indices: 8339458--8339706 Score: 329
Period size: 122 Copynumber: 2.0 Consensus size: 122
8339448 TTTAGTAAAA
* * *
8339458 AAAAACACCTTGAATAATCCAAAAAAAATAGAAATAGATTATTCAAGGCATTTTTGGCCAAAAAC
1 AAAAACACCTTGAATAATCCAAAAAAAATAGAAAGAGATTATTCAAAGCATTTTTAGCCAAAAAC
* * *
8339523 ACCTTGAATAACCCCATTCAATTTTTTGTAAAGGATTATTCAAAGCATTTTCTTGCC
66 ACCTTGAATAACCCCATTCAACTTTTTGTAAAGAATTATTCAAAGCATTTTCTTACC
* * * * * *
8339580 AAAAACACCTTGAATAATCCTAGAAAAATGGAAGGGGATTATTCAAAGCATTTTCTAGTCAAAAA
1 AAAAACACCTTGAATAATCCAAAAAAAATAGAAAGAGATTATTCAAAGCATTTT-TAGCCAAAAA
** * * *
8339645 TGCCTTGAATAATCCCATTCAACTTTTTGTAAAGAATTATTCAAGGCGTTTT-TTACC
65 CACCTTGAATAACCCCATTCAACTTTTTGTAAAGAATTATTCAAAGCATTTTCTTACC
8339702 AAAAA
1 AAAAA
8339707 TCGACTTGAA
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
122 56 0.51
123 53 0.49
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.31
Consensus pattern (122 bp):
AAAAACACCTTGAATAATCCAAAAAAAATAGAAAGAGATTATTCAAAGCATTTTTAGCCAAAAAC
ACCTTGAATAACCCCATTCAACTTTTTGTAAAGAATTATTCAAAGCATTTTCTTACC
Found at i:8344821 original size:13 final size:13
Alignment explanation
Indices: 8344785--8344821 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8344775 CTTATCAACG
8344785 TCTTTATATATGT
1 TCTTTATATATGT
* *
8344798 TCTCTACATATGT
1 TCTTTATATATGT
8344811 TCTTTATATAT
1 TCTTTATATAT
8344822 TCACTTTTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.24, C:0.14, G:0.05, T:0.57
Consensus pattern (13 bp):
TCTTTATATATGT
Found at i:8346324 original size:161 final size:161
Alignment explanation
Indices: 8345865--8347592 Score: 1488
Period size: 161 Copynumber: 10.9 Consensus size: 161
8345855 AAGTAAGTTT
* * * * ** * *
8345865 ATGATATTAAACTTATTCGAATAATTGAACTTGGTTTCCATTGTCAATATGTTTGAAAAAGTTAC
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
** * * ** * * *
8345930 AATTTATGTCTGTTTAAGACTTTTTGTGCCGA-TAAAAGAAAAAAATGTAAATTTACAATTATTG
66 TGTTTACGTCTGTTTAAGACTTTTTATGCC-ATTAAAAGGCAAAAATGCAAATTTGCTATTATTG
* * *
8345994 TTCTATTTTAACAGTTTTGATAGTTTTAATAC
130 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * *
8346026 ATGATATTAAACTTGTCTGAATAATTGAACTTGGTTTCCAT-GATT--TATGTGTGAAAAAGTTG
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAG-TTGATATGTGTGAAAAAGTTA
* * *
8346088 TTGTTTATGTC-GATTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAAGTTGCTATTGTT
65 TTGTTTACGTCTG-TTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATT
* *
8346152 GTTCTATTTTAACAATTTGGATAGCTTCAATAT
129 GTTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * *
8346185 ATGATATTAAACTTGTCCAAATGATTGAACTTGGTTTCCATAGTTGATATGTATGAAAAAATTAC
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
* * * * * *
8346250 TGTTTACGTCTGTTTAGGACTTTTTGTGCCGTTAAAAGGCAAAAATGTGAAA-TTACTGTTATTG
66 TGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATG-CAAATTTGCTATTATTG
*
8346314 TGCTATTTTAACAGTTTGGATAGCTTCAATAC
130 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * ** * * *
8346346 ATG-TATTAAACCTATTTGAAGGATTGAACTTGGTTTCCAT-GATTGATATGTATGAAAAAGTTC
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAG-TTGATATGTGTGAAAAAGTTA
* * * * * * * *
8346409 TTATTTATGTCTGTTTAGGACTTTTTATGCTATTAGAAGGTAAAAATGCAAATTTCCTATTGTTG
65 TTGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTG
* * * * *
8346474 TTATGTTTTCACATTTTTGATAG-TT---T--
130 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * * *
8346500 -TAATATTAAACTTGTTCGAATGATTGAACTTGGTTTTCACAATTGATATGTATGAAAAAGTTAT
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
* * * * * * * * * **
8346564 CGTTTACATCTATTTAAGACTTTTTATGTCGTTAAAAGGCAAAAATACAAAATTGTTGTTATCAT
66 TGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTGT
* * *
8346629 GCTATTTTAATAGTTTGGATAGCTTTAATAC
131 TCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * * *
8346660 ATGATATTAAACTTGTCCAAATGATTGAACATGGTTTCTACAGTTGATATATATGAAAAAGTTAT
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
* ** *** **
8346725 TGTTTACCTCTGTTTAAGGTTTTTTTATGTTGTTAAAAGTTAAAAATGCAAATTTGCTATTATTG
66 TGTTTACGTCTGTTTAA-GACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTG
* * * *
8346790 TTTTGTTTTAACAATTTGGATGGCTTCAATAC
130 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * * * * *
8346822 ATGATATTAAACTTGTCTGAATGATTGAACTTGATTTTCACAGTTAAAATGTGTGAAAAAATTAC
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
* * * * * * * *
8346887 CGTTAATGTCTATTTAAGACTTTTTATGCCATTAAAAAGCAAAATTGCAAATTTGATATTATTAT
66 TGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTGT
** * * *
8346952 GGTATTTTAATAGTTTGGATAGTTTTAATAC
131 TCTATTTTAACAGTTTGGATAGCTTCAATAC
** ** * *
8346983 ACAATATTAAACTTGTATGAATGATTAAACTTGGCTTT-CATAGTTGATATGTGTGAAAAAGTTG
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGG-TTTCCATAGTTGATATGTGTGAAAAAGTTA
* * * * * * * *
8347047 TTGTTTACCTCTATTTAAG-TTTTTTGTGTCGTTAAAAAGCAAAAATGCAAAATTGCTATTATTG
65 TTGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTG
8347111 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
130 TTCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * *
8347143 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACAGTTGATATGTGTGGAAAAGTTGT
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
* * * * * * * *
8347208 TGTTTACCTCTGTTTAAG-GTTTTTTTGTATCTTTAAAAAGTAAAAATGCAAATTTGCTGTTATT
66 TGTTTACGTCTGTTTAAGACTTTTTATG--CCATTAAAAGGCAAAAATGCAAATTTGCTATTATT
8347272 GTTC-----T---A---T---T---TT-AATAC
129 GTTCTATTTTAACAGTTTGGATAGCTTCAATAC
* *
8347287 ATGATATTAAACTTGTTCGAATGATTGAACTTGGTTTCCATAGTTGAAATGTGTG-AAAAGTTAT
1 ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
** * * * * * * *
8347351 CATTGATGTCTATTTAAGACTTTTTACGCCATTAAAAGGCAAAAATGCAAAATTGTTGTTATTGT
66 TGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTGT
* * *
8347416 GCTAGTTTAATAGTTTGGATAGCTTCAATA-
131 TCTATTTTAACAGTTTGGATAGCTTCAATAC
* * * * * * ** *
8347446 A--ACTA-T-AACTTGTTCGAATGAATGAACTTAGTTTCGACAGTTGATATGTGTAAAAAAACTG
1 ATGA-TATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTA
* * * * * * *
8347507 TTGTTTACCTCTGTTTAAGATTTTTTGTGTCATTAAAAGACAAAAACGCAAATTTGCTGTTATTG
65 TTGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTG
* *
8347572 TTTTCTTTTAACAGTTTGGAT
130 TTCTATTTTAACAGTTTGGAT
8347593 GATATTAAAT
Statistics
Matches: 1265, Mismatches: 257, Indels: 94
0.78 0.16 0.06
Matches are distributed among these distances:
142 32 0.03
143 20 0.02
144 62 0.05
145 2 0.00
147 1 0.00
148 1 0.00
150 1 0.00
151 1 0.00
153 2 0.00
154 114 0.09
155 2 0.00
156 42 0.03
157 75 0.06
158 5 0.00
159 144 0.11
160 264 0.21
161 329 0.26
162 168 0.13
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (161 bp):
ATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTCCATAGTTGATATGTGTGAAAAAGTTAT
TGTTTACGTCTGTTTAAGACTTTTTATGCCATTAAAAGGCAAAAATGCAAATTTGCTATTATTGT
TCTATTTTAACAGTTTGGATAGCTTCAATAC
Found at i:8347093 original size:637 final size:636
Alignment explanation
Indices: 8345996--8347225 Score: 1458
Period size: 637 Copynumber: 1.9 Consensus size: 636
8345986 AATTATTGTT
* * ** *
8345996 CTATTTTAACAGTTTTGATAGTTTTAATACATGATATTAAACTTGTCTGAATAATTGAACTTGGT
1 CTATTTTAACAGTTTGGATAGCTTTAATACATGATATTAAACTTGTCCAAATAATTGAACATGGT
* * * **
8346061 TTCCATGATTTATGTGTGAAAAAGTTGTTGTTTATGTCGATTTAAGACTTTTTATGCCATTAAAA
66 TTCCATGA-TTATATATGAAAAAGTTATTGTTTACCTCGATTTAAGACTTTTTATGCCATTAAAA
* *
8346126 GGCAAAAATGCAAAGTTGCTATTGTTGTTCTATTTTAACAATTTGGATAGCTTCAATATATGATA
130 GGCAAAAATGCAAAGTTGCTATTATTGTTCTATTTTAACAATTTGGATAGCTTCAATACATGATA
* * * * * *
8346191 TTAAACTTGTCCAAATGATTGAACTTGGTTTCCATAGTTGATATGTATGAAAAAATTACTGTTTA
195 TTAAACTTGTCCAAATGATTGAACTTGATTTCCACAGTTAAAATGTATGAAAAAATTACCGTTAA
* * * * * * *
8346256 CGTCTGTTTAGGACTTTTTGTGCCGTTAAAAGGCAAAAATGTGAAATTACTGTTATTGTGCTATT
260 CGTCTATTTAAGACTTTTTATGCCATTAAAAAGCAAAAATGTGAAATTACTATTATTATGCTATT
** * *
8346321 TTAACAGTTTGGATAGCTTCAATACATGTATTAAACCTATTTGAAGGATTGAACTTGGTTTCCAT
325 TTAACAGTTTGGATAGCTTCAATACAAATATTAAACCTATATGAAGGATTAAACTTGGTTTCCAT
** * * * * *
8346386 GATTGATATGTATGAAAAAGTTCTTATTTATGTCTGTTTAGGACTTTTTATGCTATTAGAAGGTA
390 GATTGATATGTATGAAAAAGTTCTTATTTACCTCTATTTAAGACTTTTTATGCTATTAAAAAGCA
* * * * * *
8346451 AAAATGCAAATTTCCTATTGTTGTTATGTTTTCACATTTTTGATAG-TT-T-TAATATTAAACTT
455 AAAATGCAAAATTCCTATTATTGTTATATTTTAACAGTTTGGATAGCTTATATAATATTAAACTT
*
8346513 GTTCGAATGATTGAACTTGGTTTTCACAATTGATATGTATGAAAAAGTTATCGTTTACATCTATT
520 GTCCGAATGATTGAACTTGGTTTTCACAATTGATATGTATGAAAAAGTTATCGTTTACATCTATT
8346578 TAAGACTTTTTATGTCGTTAAAAGGCAAAAATACAAAATTGTTGTTATCATG
585 TAAGACTTTTTATGTCGTTAAAAGGCAAAAATACAAAATTGTTGTTATCATG
* *
8346630 CTATTTTAATAGTTTGGATAGCTTTAATACATGATATTAAACTTGTCCAAATGATTGAACATGGT
1 CTATTTTAACAGTTTGGATAGCTTTAATACATGATATTAAACTTGTCCAAATAATTGAACATGGT
** ***
8346695 TTCTACAGTTGA-TATATATGAAAAAGTTATTGTTTACCTCTG-TTTAAGGTTTTTTTATGTTGT
66 TTC--CA--TGATTATATATGAAAAAGTTATTGTTTACCTC-GATTTAA-GACTTTTTATGCCAT
** * * * *
8346758 TAAAAGTTAAAAATGCAAATTTGCTATTATTGTTTTGTTTTAACAATTTGGATGGCTTCAATACA
125 TAAAAGGCAAAAATGCAAAGTTGCTATTATTGTTCTATTTTAACAATTTGGATAGCTTCAATACA
** * *
8346823 TGATATTAAACTTGTCTGAATGATTGAACTTGATTTTCACAGTTAAAATGTGTGAAAAAATTACC
190 TGATATTAAACTTGTCCAAATGATTGAACTTGATTTCCACAGTTAAAATGTATGAAAAAATTACC
*
8346888 GTTAATGTCTATTTAAGACTTTTTATGCCATTAAAAAGC-AAAAT-TGCAAATTTGA-TATTATT
255 GTTAACGTCTATTTAAGACTTTTTATGCCATTAAAAAGCAAAAATGTG-AAA-TT-ACTATTATT
* * * * * * *
8346950 ATGGTATTTTAATAGTTTGGATAGTTTTAATACACAATATTAAACTTGTATGAATGATTAAACTT
317 ATGCTATTTTAACAGTTTGGATAGCTTCAATACA-AATATTAAACCTATATGAAGGATTAAACTT
* * * * *
8347015 GGCTTT-CAT-AGTTGATATGTGTGAAAAAGTTGTTGTTTACCTCTATTTAAG-TTTTTTGTG-T
381 GG-TTTCCATGA-TTGATATGTATGAAAAAGTTCTTATTTACCTCTATTTAAGACTTTTTATGCT
* * *
8347076 CGTTAAAAAGCAAAAATGCAAAATTGCTATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAAT
444 -ATTAAAAAGCAAAAATGCAAAATTCCTATTATTGTTATATTTTAACAGTTTGGATAGCTT--AT
* * * *
8347141 ACATGATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACAGTTGATATGTGTGGAAAAGTT
506 --ATAATATTAAACTTGTCCGAATGATTGAACTTGGTTTTCACAATTGATATGTATGAAAAAGTT
* * * *
8347206 GTTGTTTACCTCTGTTTAAG
569 ATCGTTTACATCTATTTAAG
8347226 GTTTTTTTGT
Statistics
Matches: 492, Mismatches: 84, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
634 61 0.12
635 2 0.00
636 39 0.08
637 246 0.50
638 67 0.14
639 3 0.01
641 1 0.00
644 73 0.15
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (636 bp):
CTATTTTAACAGTTTGGATAGCTTTAATACATGATATTAAACTTGTCCAAATAATTGAACATGGT
TTCCATGATTATATATGAAAAAGTTATTGTTTACCTCGATTTAAGACTTTTTATGCCATTAAAAG
GCAAAAATGCAAAGTTGCTATTATTGTTCTATTTTAACAATTTGGATAGCTTCAATACATGATAT
TAAACTTGTCCAAATGATTGAACTTGATTTCCACAGTTAAAATGTATGAAAAAATTACCGTTAAC
GTCTATTTAAGACTTTTTATGCCATTAAAAAGCAAAAATGTGAAATTACTATTATTATGCTATTT
TAACAGTTTGGATAGCTTCAATACAAATATTAAACCTATATGAAGGATTAAACTTGGTTTCCATG
ATTGATATGTATGAAAAAGTTCTTATTTACCTCTATTTAAGACTTTTTATGCTATTAAAAAGCAA
AAATGCAAAATTCCTATTATTGTTATATTTTAACAGTTTGGATAGCTTATATAATATTAAACTTG
TCCGAATGATTGAACTTGGTTTTCACAATTGATATGTATGAAAAAGTTATCGTTTACATCTATTT
AAGACTTTTTATGTCGTTAAAAGGCAAAAATACAAAATTGTTGTTATCATG
Found at i:8347601 original size:304 final size:304
Alignment explanation
Indices: 8346974--8347582 Score: 772
Period size: 304 Copynumber: 2.0 Consensus size: 304
8346964 GTTTGGATAG
** * *
8346974 TTTTAATACACAATATTAAACTTGTAT-GAATGATTAAACTTGGCTTT-CATAGTTGATATGTGT
1 TTTTAATACATGATATTAAACTTGTATCGAATGATTGAACTTGG-TTTCCATAGTTGAAATGTGT
* ** * * ** * *
8347037 GAAAAAGTTGTTGTTTACCTCTATTTAAGTTTTTTGTGTCGTTAAAAAGCAAAAATGCAAAATTG
65 GAAAAAGTTATCATTGACCTCTATTTAAGCTTTTTACGCCATTAAAAAGCAAAAATGCAAAATTG
* *
8347102 CTATTATTGTTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTCCGAATGA
130 CTATTATTGTGCTAGTTTAACAGTTTGGATAGCTTCAATACA-GATATTAAACTTGTCCGAATGA
* * ** ** *
8347167 TTGAACTTGGTTTTCACAGTTGATATGTGTGGAAAAGTTGTTGTTTACCTCTGTTTAAGGTTTTT
194 ATGAACTTAGTTTTCACAGTTGATATGTGTAAAAAAACTGTTGTTTACCTCTGTTTAAGGATTTT
* * *
8347232 TTGTATCTTTAAAAAGTAAAAATGCAAATTTGCTGTTATTGTTCTA
259 TTGTATCATTAAAAAGCAAAAACGCAAATTTGCTGTTATTGTTCTA
8347278 TTTTAATACATGATATTAAACTTGT-TCGAATGATTGAACTTGGTTTCCATAGTTGAAATGTGTG
1 TTTTAATACATGATATTAAACTTGTATCGAATGATTGAACTTGGTTTCCATAGTTGAAATGTGTG
** *
8347342 -AAAAGTTATCATTGATGTCTATTTAAGACTTTTTACGCCATTAAAAGGCAAAAATGCAAAATTG
66 AAAAAGTTATCATTGACCTCTATTTAAG-CTTTTTACGCCATTAAAAAGCAAAAATGCAAAATTG
* * * *
8347406 TTGTTATTGTGCTAGTTTAATAGTTTGGATAGCTTCAATA-A-ACTA-T-AACTTGTTCGAATGA
130 CTATTATTGTGCTAGTTTAACAGTTTGGATAGCTTCAATACAGA-TATTAAACTTGTCCGAATGA
8347467 ATGAACTTAG-TTTCGACAGTTGATATGTGTAAAAAAACTGTTGTTTACCTCTGTTTAA-GATTT
194 ATGAACTTAGTTTTC-ACAGTTGATATGTGTAAAAAAACTGTTGTTTACCTCTGTTTAAGGATTT
* * *
8347530 TTTGTGTCATT-AAAAGACAAAAACGCAAATTTGCTGTTATTGTTTTC
258 TTTGTATCATTAAAAAG-CAAAAACGCAAATTTGCTGTTATTGTTCTA
8347577 TTTTAA
1 TTTTAA
8347583 CAGTTTGGAT
Statistics
Matches: 264, Mismatches: 35, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
298 5 0.02
299 49 0.19
300 61 0.23
301 2 0.01
302 2 0.01
303 26 0.10
304 119 0.45
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (304 bp):
TTTTAATACATGATATTAAACTTGTATCGAATGATTGAACTTGGTTTCCATAGTTGAAATGTGTG
AAAAAGTTATCATTGACCTCTATTTAAGCTTTTTACGCCATTAAAAAGCAAAAATGCAAAATTGC
TATTATTGTGCTAGTTTAACAGTTTGGATAGCTTCAATACAGATATTAAACTTGTCCGAATGAAT
GAACTTAGTTTTCACAGTTGATATGTGTAAAAAAACTGTTGTTTACCTCTGTTTAAGGATTTTTT
GTATCATTAAAAAGCAAAAACGCAAATTTGCTGTTATTGTTCTA
Found at i:8348202 original size:21 final size:21
Alignment explanation
Indices: 8348176--8348252 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 21
8348166 AGCATAAAAA
8348176 GAACAAGAGCATGCTAGAATT
1 GAACAAGAGCATGCTAGAATT
*
8348197 GAACAA-AGGCATGCTAAAATT
1 GAACAAGA-GCATGCTAGAATT
* * * * * *
8348218 GAAGAATAACGTGTTAGAATG
1 GAACAAGAGCATGCTAGAATT
*
8348239 GACCAAGAGCATGC
1 GAACAAGAGCATGC
8348253 AAGATTTCAA
Statistics
Matches: 41, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
20 1 0.02
21 39 0.95
22 1 0.02
ACGTcount: A:0.43, C:0.14, G:0.25, T:0.18
Consensus pattern (21 bp):
GAACAAGAGCATGCTAGAATT
Found at i:8350245 original size:15 final size:16
Alignment explanation
Indices: 8350220--8350252 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
8350210 GAAATAAAAA
8350220 AAAATTATAACTATTT
1 AAAATTATAACTATTT
8350236 AAAA-TATAACTATTT
1 AAAATTATAACTATTT
8350251 AA
1 AA
8350253 CAAATACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAATTATAACTATTT
Found at i:8351344 original size:261 final size:263
Alignment explanation
Indices: 8350866--8351398 Score: 637
Period size: 261 Copynumber: 2.0 Consensus size: 263
8350856 GAATCCATAA
* *
8350866 ATTTTTTTCGAAATCTTACTGGTGGGTATTTGATTTCAACGTTTGATTAAAAGTAATCTAATTAC
1 ATTTTTTTCGAAATCTTACTGATGGGTATTTGATTTCAACGTTTGACTAAAAGTAATCTAATTAC
* * * * * **
8350931 GGGGGAAAGTGACAAATTCTCAATAGTACCCAAAGTCCTAGAATCAGAAACCTACCTCTCTTTAT
66 GAGAGAAAGTGACAAATTCTCAATAGTACCCAAAGTCCTAAAATCAAAAACCCACCTCTCTCCAT
** ** * * *
8350996 GGTATTCTAGGATTTTGAAGGGGAAAGTAGTGTTATTTTCAAATTTAACTTGAATAAAAATTATG
131 GGTATTCTAGGATTTCCAAGGGGAAAGTAGCATTATTTTCAAATTTAACCTAAATAAAAATTATA
* * *
8351061 AAATAGCTGTTACCTATTTAAAAAACATGTTTGAAAGTGACTACAACTCAATTATA-G-TTTGCT
196 AAATAACTATTACCTATTTAAAAAACATGTTTGAAAATGACTACAACTCAATTATAGGTTTTGCT
8351124 GCT
261 GCT
* * * * * * * * * *
8351127 ATTTTTTTGGAAATCTTATTGATGTGTATTTGATTTCAATGTTTGGCTCAAGGTGATCTGATTAT
1 ATTTTTTTCGAAATCTTACTGATGGGTATTTGATTTCAACGTTTGACTAAAAGTAATCTAATTAC
* * * * *
8351192 GAGAGAAAGTGACAGATTTTCAATAGTACCTAAAGT-TTCAAAATCAAAAACCCACCTCTC-CCG
66 GAGAGAAAGTGACAAATTCTCAATAGTACCCAAAGTCCT-AAAATCAAAAACCCACCTCTCTCCA
*
8351255 TGGTATTCTAGGA-TTCCAAGGGAGAAAGTAGCATTATTTTCAAATTTGACCTAAATAAAAAATT
130 TGGTATTCTAGGATTTCCAAGGG-GAAAGTAGCATTATTTTCAAATTTAACCTAAAT-AAAAATT
* *
8351319 ATAAAATAACTATTACCCT-TTTAAAAAGCATGTTTGAAAATGACTGCAACTCAATTATAGGTTT
193 ATAAAATAACTATTA-CCTATTTAAAAAACATGTTTGAAAATGACTACAACTCAATTATAGG-TT
8351383 TTGCTGCT
256 TTGCTGCT
*
8351391 TTTTTTTT
1 ATTTTTTT
8351399 TTGTGATTGC
Statistics
Matches: 227, Mismatches: 38, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
259 7 0.03
260 42 0.19
261 158 0.70
262 4 0.02
264 16 0.07
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (263 bp):
ATTTTTTTCGAAATCTTACTGATGGGTATTTGATTTCAACGTTTGACTAAAAGTAATCTAATTAC
GAGAGAAAGTGACAAATTCTCAATAGTACCCAAAGTCCTAAAATCAAAAACCCACCTCTCTCCAT
GGTATTCTAGGATTTCCAAGGGGAAAGTAGCATTATTTTCAAATTTAACCTAAATAAAAATTATA
AAATAACTATTACCTATTTAAAAAACATGTTTGAAAATGACTACAACTCAATTATAGGTTTTGCT
GCT
Found at i:8356383 original size:14 final size:15
Alignment explanation
Indices: 8356364--8356450 Score: 51
Period size: 13 Copynumber: 5.9 Consensus size: 15
8356354 AATAGGTGAG
8356364 TTTATTTT-TTTTTC
1 TTTATTTTATTTTTC
*
8356378 TTTATTTTATTTTTATT
1 TTTATTTTA-TTTT-TC
*
8356395 TTTATTTTAATTTT-
1 TTTATTTTATTTTTC
* *
8356409 TTT-TTGTATTTTAC
1 TTTATTTTATTTTTC
*
8356423 -ATA-TTTATTTTAT-
1 TTTATTTTATTTT-TC
8356436 TTCTATTTTATTTTT
1 TT-TATTTTATTTTT
8356451 ATTCTTTACT
Statistics
Matches: 55, Mismatches: 9, Indels: 17
0.68 0.11 0.21
Matches are distributed among these distances:
13 15 0.27
14 11 0.20
15 4 0.07
16 15 0.27
17 10 0.18
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.78
Consensus pattern (15 bp):
TTTATTTTATTTTTC
Found at i:8356386 original size:5 final size:5
Alignment explanation
Indices: 8356364--8356449 Score: 63
Period size: 5 Copynumber: 16.6 Consensus size: 5
8356354 AATAGGTGAG
*
8356364 TTTAT TTT-T TTT-T CTTTAT TTTATT TTTATT TTTAT TTTAA TTT-T
1 TTTAT TTTAT TTTAT -TTTAT TTTA-T TTTA-T TTTAT TTTAT TTTAT
*
8356409 TTT-T TGTAT TTTACAT ATTTAT TTTAT TTCTAT TTTAT TTT
1 TTTAT TTTAT TTT--AT -TTTAT TTTAT TT-TAT TTTAT TTT
8356450 TATTCTTTAC
Statistics
Matches: 69, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
4 11 0.16
5 34 0.49
6 19 0.28
7 2 0.03
8 3 0.04
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:8356392 original size:11 final size:11
Alignment explanation
Indices: 8356378--8356453 Score: 80
Period size: 11 Copynumber: 6.5 Consensus size: 11
8356368 TTTTTTTTTC
8356378 TTTATTTTATT
1 TTTATTTTATT
8356389 TTTATTTTTATT
1 TTTA-TTTTATT
* *
8356401 TTAATTTTTTT
1 TTTATTTTATT
*
8356412 TTGTATTTTACATA
1 TT-TATTTT--ATT
8356426 TTTATTTTATT
1 TTTATTTTATT
*
8356437 TCTATTTTATT
1 TTTATTTTATT
8356448 TTTATT
1 TTTATT
8356454 CTTTACTATT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
11 29 0.55
12 15 0.28
13 6 0.11
14 3 0.06
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:8356393 original size:6 final size:6
Alignment explanation
Indices: 8356364--8356458 Score: 72
Period size: 6 Copynumber: 15.7 Consensus size: 6
8356354 AATAGGTGAG
* *
8356364 TTTATT TTT-TT TTCTTTAT TTTATT TTTATT TTTATT TTAATT TTT-TT
1 TTTATT TTTATT TT-TAT-T TTTATT TTTATT TTTATT TTTATT TTTATT
* * *
8356412 TTGTATT TTACATA TTTA-T TTTATT TCTA-T TTTATT TTTATT CTTTA
1 TT-TATT TT-TATT TTTATT TTTATT TTTATT TTTATT TTTATT -TTTA
8356459 CTATTATTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
5 16 0.23
6 37 0.52
7 15 0.21
8 3 0.04
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:8356459 original size:37 final size:36
Alignment explanation
Indices: 8356364--8356517 Score: 93
Period size: 36 Copynumber: 4.1 Consensus size: 36
8356354 AATAGGTGAG
* * *
8356364 TTTATTTTTTTTTCTTTATTTTA-TTTTTATTTTTAT
1 TTTAATTTTTTTT-TATATTTTACTATTTATTTTTAT
*
8356400 TTTAATTTTTTTTTGTATTTTACATATTTA-TTTTAT
1 TTTAATTTTTTTTTATATTTTAC-TATTTATTTTTAT
8356436 TTCT-ATTTTATTTTTAT-TCTTTACTATTATTATTGTTT-T
1 TT-TAATTTT-TTTTTATAT-TTTACTA-T-TTATT-TTTAT
* * *
8356475 TTTATATATTTTTTCTTTTATCTTAGGTATTTATTATTTAT
1 TTTA-AT-TTTTTT-TTATATTTTA-CTATTTATT-TTTAT
8356516 TT
1 TT
8356518 ATTGATCATT
Statistics
Matches: 94, Mismatches: 8, Indels: 27
0.73 0.06 0.21
Matches are distributed among these distances:
35 8 0.09
36 28 0.30
37 18 0.19
38 4 0.04
39 4 0.04
40 16 0.17
41 13 0.14
42 3 0.03
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.74
Consensus pattern (36 bp):
TTTAATTTTTTTTTATATTTTACTATTTATTTTTAT
Found at i:8356506 original size:78 final size:78
Alignment explanation
Indices: 8356364--8356509 Score: 172
Period size: 78 Copynumber: 1.9 Consensus size: 78
8356354 AATAGGTGAG
* * * * *
8356364 TTTATTTTTTTTTCTTTATTTTATTTTTATTTTTATTTTAATTTTTTTTTGTATTTTACATATTT
1 TTTATTTTTTATTCTTTATATTATTATTATTTTTATTATAATTTTTTTTTGTATCTTACATATTT
8356429 ATTTTATTTCTAT
66 ATTTTATTTCTAT
* **
8356442 TTTA-TTTTTATTCTTTACTATTATTATTGTTTTT-TTATATATTTTTTCTTT-TATCTTAGGTA
1 TTTATTTTTTATTCTTTA-TATTATTATTATTTTTATTATA-ATTTTTT-TTTGTATCTTACATA
8356504 TTTATT
63 TTTATT
8356510 ATTTATTTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
77 16 0.28
78 38 0.67
79 3 0.05
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (78 bp):
TTTATTTTTTATTCTTTATATTATTATTATTTTTATTATAATTTTTTTTTGTATCTTACATATTT
ATTTTATTTCTAT
Found at i:8356640 original size:12 final size:12
Alignment explanation
Indices: 8356602--8356641 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
8356592 TTATATGTTA
8356602 TAATTTATCTGT
1 TAATTTATCTGT
8356614 T-ATTTAAT-T-T
1 TAATTT-ATCTGT
8356624 TAATTTATCTGT
1 TAATTTATCTGT
8356636 TAATTT
1 TAATTT
8356642 TTTTGATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (12 bp):
TAATTTATCTGT
Found at i:8356650 original size:21 final size:21
Alignment explanation
Indices: 8356602--8356670 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 21
8356592 TTATATGTTA
8356602 TAATTTATCTGTTATTTAATTT
1 TAATTTATCTGTTATTT-ATTT
8356624 TAATTTATCTGTTAATTT-TTT
1 TAATTTATCTGTT-ATTTATTT
*
8356645 TGATTTATC--TTATTTATTT
1 TAATTTATCTGTTATTTATTT
*
8356664 TCATTTA
1 TAATTTA
8356671 ATTTTTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.09
19 11 0.26
21 11 0.26
22 13 0.30
23 4 0.09
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (21 bp):
TAATTTATCTGTTATTTATTT
Found at i:8356669 original size:19 final size:19
Alignment explanation
Indices: 8356602--8356683 Score: 60
Period size: 19 Copynumber: 4.1 Consensus size: 19
8356592 TTATATGTTA
8356602 TAATTTATCTGTTATTTAATTT
1 TAATTTATC--TTATTT-ATTT
8356624 TAATTTATCTGTTAATTT-TTT
1 TAATTTATC--TT-ATTTATTT
*
8356645 TGATTTATCTTATTTATTT
1 TAATTTATCTTATTTATTT
* *
8356664 TCATTTAAT-TTTTTTATTT
1 TAATTT-ATCTTATTTATTT
8356683 T
1 T
8356684 TTTATTTATC
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
18 4 0.07
19 20 0.37
20 2 0.04
21 11 0.20
22 13 0.24
23 4 0.07
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (19 bp):
TAATTTATCTTATTTATTT
Found at i:8356670 original size:40 final size:42
Alignment explanation
Indices: 8356604--8356693 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 42
8356594 ATATGTTATA
8356604 ATTTATCTGTTATTTAATTTTAATTT-ATCTGTTAATTTTTTT
1 ATTTATC-GTTATTTAATTTTAATTTAATCTGTTAATTTTTTT
* * * *
8356646 GATTTATC-TTATTT-ATTTTCATTTAATTTTTTTATTTTTTT
1 -ATTTATCGTTATTTAATTTTAATTTAATCTGTTAATTTTTTT
8356687 ATTTATC
1 ATTTATC
8356694 CGACTGAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
40 16 0.38
41 19 0.45
43 7 0.17
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.69
Consensus pattern (42 bp):
ATTTATCGTTATTTAATTTTAATTTAATCTGTTAATTTTTTT
Found at i:8357520 original size:5 final size:5
Alignment explanation
Indices: 8357496--8357646 Score: 66
Period size: 5 Copynumber: 29.8 Consensus size: 5
8357486 CGTTTCAAGT
*
8357496 TTTTT TTTTAA TTTTAA TTTTA -TTTA -TTTA -TTTA TTTTTA TTATTA
1 TTTTA TTTT-A TTTT-A TTTTA TTTTA TTTTA TTTTA -TTTTA TT-TTA
* * * * * * *
8357542 GATTAA GTTTA TTTAA TATTC TTTTA TCTTTA TTTTA TTTTTA TTTTTG
1 -TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA -TTTTA -TTTTA
* *
8357591 TTTTA CTTTT- TTTTA TTTT- TTTT- TTTCA CTTTTA TTTTG TTTTA --TTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
8357638 TTTTA TTTT
1 TTTTA TTTT
8357647 CTTTAAATAA
Statistics
Matches: 115, Mismatches: 18, Indels: 26
0.72 0.11 0.16
Matches are distributed among these distances:
3 3 0.03
4 23 0.20
5 46 0.40
6 42 0.37
7 1 0.01
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:8357535 original size:6 final size:6
Alignment explanation
Indices: 8357495--8357646 Score: 52
Period size: 6 Copynumber: 25.7 Consensus size: 6
8357485 CCGTTTCAAG
* * * *
8357495 TTTTT- TTTTTA ATTTTA ATTTTA TTTATT- TATTTA TTTTTA TTATTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA
** ** * *
8357542 -GATTA AGTTTA TTTAATA TTCTTTTA TCTTTA -TTTTA TTTTTA TTTTT-
1 TTTTTA TTTTTA TTT-TTA TT-T-TTA TTTTTA TTTTTA TTTTTA TTTTTA
* * * *
8357590 GTTTTA -CTTT- TTTTTA TTTTTT TTTTTCA CTTTTA TTTTGT- TTTATTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT-A TTTTTA TTTT-TA TTT-TTA
8357638 -TTTTA TTTT
1 TTTTTA TTTT
8357647 CTTTAAATAA
Statistics
Matches: 111, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
5 28 0.25
6 66 0.59
7 13 0.12
8 4 0.04
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:8357607 original size:27 final size:28
Alignment explanation
Indices: 8357563--8357616 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
8357553 TTTAATATTC
8357563 TTTTATCTTTATTTTATTTTTATTTTTG
1 TTTTATCTTTATTTTATTTTTATTTTTG
* *
8357591 TTTTA-CTTTTTTTTATTTTTTTTTTT
1 TTTTATCTTTATTTTATTTTTATTTTT
8357617 CACTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.11, C:0.04, G:0.02, T:0.83
Consensus pattern (28 bp):
TTTTATCTTTATTTTATTTTTATTTTTG
Found at i:8357611 original size:11 final size:11
Alignment explanation
Indices: 8357570--8357615 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
8357560 TTCTTTTATC
*
8357570 TTTATTTTATT
1 TTTATTTTTTT
*
8357581 TTTATTTTTGT
1 TTTATTTTTTT
*
8357592 TTTA-CTTTTT
1 TTTATTTTTTT
8357602 TTTATTTTTTT
1 TTTATTTTTTT
8357613 TTT
1 TTT
8357616 TCACTTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.85
Consensus pattern (11 bp):
TTTATTTTTTT
Found at i:8357628 original size:18 final size:18
Alignment explanation
Indices: 8357558--8357646 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 18
8357548 GTTTATTTAA
* *
8357558 TATTCTTTTATCTTTATTT
1 TATTATTTTAT-TTTGTTT
8357577 TA-T-TTTTATTTTTGTTT
1 TATTATTTTA-TTTTGTTT
*
8357594 TACTTTTTTTTATTTT-TTT
1 TA--TTATTTTATTTTGTTT
*
8357613 TTTTCACTTTTATTTTGTTT
1 TATT-A-TTTTATTTTGTTT
8357633 TATTATTTTATTTT
1 TATTATTTTATTTT
8357647 CTTTAAATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
17 15 0.26
18 11 0.19
19 16 0.28
20 11 0.19
21 5 0.09
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (18 bp):
TATTATTTTATTTTGTTT
Found at i:8357633 original size:23 final size:22
Alignment explanation
Indices: 8357570--8357646 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
8357560 TTCTTTTATC
8357570 TTTA-TTTTATTTTTATTTTTGT
1 TTTACTTTTATTTTT-TTTTTGT
*
8357592 TTTACTTTT-TTTTATTTTTTTT
1 TTTACTTTTATTTT-TTTTTTGT
*
8357614 TTTCACTTTTATTTTGTTTTATTAT
1 TTT-ACTTTTATTTT-TTTT-TTGT
8357639 TTTA-TTTT
1 TTTACTTTT
8357647 CTTTAAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
22 17 0.36
23 15 0.32
24 9 0.19
25 6 0.13
ACGTcount: A:0.13, C:0.04, G:0.03, T:0.81
Consensus pattern (22 bp):
TTTACTTTTATTTTTTTTTTGT
Found at i:8357650 original size:28 final size:26
Alignment explanation
Indices: 8357560--8357650 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 26
8357550 TTATTTAATA
8357560 TTCTTTTATCTTTATTTTA-TTTTTATTT
1 TTCTTTTAT-TTT-TTTTATTTTTTA-TT
* *
8357588 TTGTTTTACTTTTTTTTATTTTTTTTT
1 TTCTTTTA-TTTTTTTTATTTTTTATT
8357615 TTCACTTTTATTTTGTTTTATTATTTTATT
1 TT--CTTTTATTTT-TTTTATT-TTTTATT
8357645 TTCTTT
1 TTCTTT
8357651 AAATAAAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
27 9 0.17
28 23 0.43
29 13 0.25
30 8 0.15
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (26 bp):
TTCTTTTATTTTTTTTATTTTTTATT
Found at i:8357724 original size:58 final size:57
Alignment explanation
Indices: 8357662--8357988 Score: 385
Period size: 59 Copynumber: 5.7 Consensus size: 57
8357652 AATAAAATAA
*
8357662 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTCCTTCGAAATTAAAGTTTTC
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTCCTT-GAAATTAAAGTTTTC
* *
8357720 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAA-TTTCCTTGAAATTAAAGTTTTC
** *
8357777 AAAAAA-AGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTTC
1 AAAAAATA-TTTTTGAGAAAAAGTTGAAAGTATCAATTT-CCTTGAAATTAAAGTTTTC
** * * * * *
8357835 AAAAAAATATTTTCAAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTTA
1 -AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAA-TTTCCTTGAAATTAAAGTTTTC
* *
8357894 AAAAAAGAATTTTTGA-AGAAAAGTTGAAAGTATCAATTTTCTTTGAAATTAAAGTTTT-
1 AAAAAA-TATTTTTGAGA-AAAAGTTGAAAGTATCAA-TTTCCTTGAAATTAAAGTTTTC
* *
8357952 AAAAGATA-TTTTGAAAAAAAGTTGAAAGTATCAATTT
1 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTT
8357989 TTTCTGCATA
Statistics
Matches: 231, Mismatches: 28, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
55 3 0.01
56 28 0.12
57 48 0.21
58 58 0.25
59 90 0.39
60 4 0.02
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTCCTTGAAATTAAAGTTTTC
Found at i:8357724 original size:59 final size:58
Alignment explanation
Indices: 8357661--8357988 Score: 384
Period size: 58 Copynumber: 5.7 Consensus size: 58
8357651 AAATAAAATA
*
8357661 AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTCCTTCGAAATTAAAGTTTTC
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTCCTT-GAAATTAAAGTTTTC
* *
8357720 -AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAA-TTTCCTTGAAATTAAAGTTTTC
* ** *
8357777 AAAAAAA-GTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTTC
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTT-CCTTGAAATTAAAGTTTTC
** * * * *
8357835 AAAAAAATATTTTCAAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-TTTTT
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAA-TTTCCTTGAAATTAAAGTTTTC
* *
8357893 AAAAAAAGAATTTTTGA-AGAAAAGTTGAAAGTATCAATTTTCTTTGAAATTAAAGTTTT-
1 AAAAAAA-TATTTTTGAGA-AAAAGTTGAAAGTATCAA-TTTCCTTGAAATTAAAGTTTTC
* *
8357952 -AAAAGATA-TTTTGAAAAAAAGTTGAAAGTATCAATTT
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTT
8357989 TTTCTGCATA
Statistics
Matches: 231, Mismatches: 28, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
55 3 0.01
56 27 0.12
57 42 0.18
58 76 0.33
59 76 0.33
60 7 0.03
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTCCTTGAAATTAAAGTTTTC
Found at i:8357813 original size:115 final size:116
Alignment explanation
Indices: 8357661--8357989 Score: 486
Period size: 116 Copynumber: 2.8 Consensus size: 116
8357651 AAATAAAATA
* *
8357661 AAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTCCTTCGAAATTAAAGTTTTCAAAAA
1 AAAAAAAGATTTTTGAAG-AAAAGTTGAAAGTATCAATTTCCTTCGAAATTAAAGTTTTCAAAAA
8357725 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
65 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
8357777 AAAAAAAG-TTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTTCAAAAAA
1 AAAAAAAGATTTTTGAAGAAAAGTTGAAAGTATCAATTTCCTTCGAAATTAAAGTTTTC-AAAAA
** * *
8357841 ATATTTTCAAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTT
65 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
8357893 AAAAAAAGAATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCTTTGAAATTAAAGTTTT-AAAAG
1 AAAAAAAG-ATTTTTGAAGAAAAGTTGAAAGTATCAATTTCCTTCGAAATTAAAGTTTTCAAAAA
*
8357957 ATA-TTTTGAAAAAAAGTTGAAAGTATCAATTTT
65 ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTT
8357990 TTCTGCATAA
Statistics
Matches: 193, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
115 72 0.37
116 77 0.40
118 44 0.23
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (116 bp):
AAAAAAAGATTTTTGAAGAAAAGTTGAAAGTATCAATTTCCTTCGAAATTAAAGTTTTCAAAAAA
TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:8364852 original size:8 final size:8
Alignment explanation
Indices: 8364841--8364966 Score: 203
Period size: 8 Copynumber: 16.6 Consensus size: 8
8364831 TAAAAAAAAT
8364841 AAAAATGA
1 AAAAATGA
8364849 AAAAATGA
1 AAAAATGA
8364857 AAAAATGA
1 AAAAATGA
8364865 AAAAATGA
1 AAAAATGA
8364873 AAAAATGA
1 AAAAATGA
8364881 AAAAATGA
1 AAAAATGA
8364889 AAAAATG-
1 AAAAATGA
8364896 AAAAATGA
1 AAAAATGA
8364904 AAAAATG-
1 AAAAATGA
8364911 AAAAATGA
1 AAAAATGA
8364919 AAAAATG-
1 AAAAATGA
8364926 AAAAATGA
1 AAAAATGA
8364934 AAAAATG-
1 AAAAATGA
8364941 AAAAATG-
1 AAAAATGA
8364948 AAAAATG-
1 AAAAATGA
8364955 -AAAATGA
1 AAAAATGA
8364962 AAAAA
1 AAAAA
8364967 AAAAAGAGGA
Statistics
Matches: 113, Mismatches: 0, Indels: 10
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.05
7 35 0.31
8 72 0.64
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.13
Consensus pattern (8 bp):
AAAAATGA
Found at i:8364967 original size:15 final size:15
Alignment explanation
Indices: 8364841--8364966 Score: 211
Period size: 15 Copynumber: 8.3 Consensus size: 15
8364831 TAAAAAAAAT
8364841 AAAAATGAAAAAATGA
1 AAAAATG-AAAAATGA
8364857 AAAAATGAAAAAATGA
1 AAAAATG-AAAAATGA
8364873 AAAAATGAAAAAATGA
1 AAAAATG-AAAAATGA
8364889 AAAAATGAAAAATGA
1 AAAAATGAAAAATGA
8364904 AAAAATGAAAAATGA
1 AAAAATGAAAAATGA
8364919 AAAAATGAAAAATGA
1 AAAAATGAAAAATGA
8364934 AAAAATGAAAAATG-
1 AAAAATGAAAAATGA
8364948 AAAAATG-AAAATGA
1 AAAAATGAAAAATGA
8364962 AAAAA
1 AAAAA
8364967 AAAAAGAGGA
Statistics
Matches: 109, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.06
14 12 0.11
15 52 0.48
16 39 0.36
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAATGAAAAATGA
Found at i:8366046 original size:41 final size:41
Alignment explanation
Indices: 8365989--8366164 Score: 217
Period size: 41 Copynumber: 4.1 Consensus size: 41
8365979 ATGATTGTCA
8365989 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
8366030 AGGAGCAATTTACTTTCTAATTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTC-------CAAAGTCGTGGTGCCTCTGTTTAG
* * *
8366078 AGAAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
8366119 AGGAGCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
8366160 AGGAG
1 AGGAG
8366165 TCATTTATGT
Statistics
Matches: 119, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
41 80 0.67
48 39 0.33
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:8366171 original size:41 final size:41
Alignment explanation
Indices: 8366050--8366208 Score: 169
Period size: 41 Copynumber: 3.8 Consensus size: 41
8366040 TACTTTCTAA
* * * *
8366050 TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGAAGCAATTTAC
1 TTTTCAAAGTCGTGGAGCCTCTGATTAGAGGAGCAATTTAT
*
8366091 TTTTCAAAGTCGTGGTGCCTCT-ATTTAGAGGAGCAATTTAT
1 TTTTCAAAGTCGTGGAGCCTCTGA-TTAGAGGAGCAATTTAT
*
8366132 TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGTC-ATTTAT
1 TTTTCAAAGTCGTGGAGCCTCTGATTAGAGGAG-CAATTTAT
* ** * *
8366173 GTTTCTCAAAGTCATTAAGCCTTTGCTTAGAGGAGC
1 -TTT-TCAAAGTCGTGGAGCCTCTGATTAGAGGAGC
8366209 TTTGGTCAAA
Statistics
Matches: 104, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
41 72 0.69
42 6 0.06
43 26 0.25
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (41 bp):
TTTTCAAAGTCGTGGAGCCTCTGATTAGAGGAGCAATTTAT
Found at i:8366610 original size:22 final size:21
Alignment explanation
Indices: 8366575--8366651 Score: 72
Period size: 22 Copynumber: 3.8 Consensus size: 21
8366565 GTATATCAGA
* *
8366575 TTATATATTATAATTTATCTG
1 TTATTTATTTTAATTTATCTG
*
8366596 TTATTTAATTTTAATTTATTTG
1 TTATTT-ATTTTAATTTATCTG
8366618 TTAATTT-TTTT-ATTTATC--
1 TT-ATTTATTTTAATTTATCTG
*
8366636 TTATTTATTTTTATTT
1 TTATTTATTTTAATTT
8366652 GATTTTTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
17 4 0.08
18 6 0.12
19 4 0.08
20 6 0.12
21 9 0.19
22 15 0.31
23 4 0.08
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (21 bp):
TTATTTATTTTAATTTATCTG
Done.