Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 49 of 121
Found at i:8581253 original size:20 final size:20
Alignment explanation
Indices: 8581225--8581267 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8581215 TTTAAATATG
* *
8581225 CAAGAAAAATAGCAAAAAGT
1 CAAGAAAAAAAGCAAAAAAT
* *
8581245 CAAGGAAAAAAGTAAAAAAT
1 CAAGAAAAAAAGCAAAAAAT
8581265 CAA
1 CAA
8581268 CTTAAAGCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.67, C:0.09, G:0.14, T:0.09
Consensus pattern (20 bp):
CAAGAAAAAAAGCAAAAAAT
Found at i:8581447 original size:12 final size:12
Alignment explanation
Indices: 8581412--8581486 Score: 61
Period size: 12 Copynumber: 6.7 Consensus size: 12
8581402 CTAATCCTTA
8581412 AAACCAAACCCT
1 AAACCAAACCCT
**
8581424 AAATAAAACCCT
1 AAACCAAACCCT
*
8581436 AAACCAAGCCCT
1 AAACCAAACCCT
*
8581448 -----AAACCTT
1 AAACCAAACCCT
* *
8581455 AAACTAAACTCT
1 AAACCAAACCCT
8581467 AAACCAAACCCT
1 AAACCAAACCCT
8581479 AAACCAAA
1 AAACCAAA
8581487 AATCTAACCA
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
7 5 0.11
12 42 0.89
ACGTcount: A:0.52, C:0.33, G:0.01, T:0.13
Consensus pattern (12 bp):
AAACCAAACCCT
Found at i:8582871 original size:20 final size:20
Alignment explanation
Indices: 8582842--8582889 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
8582832 ATTTAAAATT
* *
8582842 ATACCCATCCTCATAATGTA
1 ATACCTATCCCCATAATGTA
8582862 ATACCTATCCCCATAATGTA
1 ATACCTATCCCCATAATGTA
8582882 ATACCTAT
1 ATACCTAT
8582890 TCCTATCCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.31
Consensus pattern (20 bp):
ATACCTATCCCCATAATGTA
Found at i:8583418 original size:17 final size:18
Alignment explanation
Indices: 8583393--8583427 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8583383 ACATTAGTTA
*
8583393 TTAATAAAATATAAATAT
1 TTAATAAAATAAAAATAT
8583411 TTAA-AAAATAAAAATAT
1 TTAATAAAATAAAAATAT
8583428 ATCAATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TTAATAAAATAAAAATAT
Found at i:8583689 original size:13 final size:13
Alignment explanation
Indices: 8583671--8583700 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8583661 ATTAAAGTTT
8583671 ATTTAAATAAAAA
1 ATTTAAATAAAAA
*
8583684 ATTTAAGTAAAAA
1 ATTTAAATAAAAA
8583697 ATTT
1 ATTT
8583701 GCCAGTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (13 bp):
ATTTAAATAAAAA
Found at i:8583734 original size:16 final size:16
Alignment explanation
Indices: 8583710--8583749 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
8583700 TGCCAGTGTA
*
8583710 ATTTGTTTTAAAGAAT
1 ATTTTTTTTAAAGAAT
8583726 ATTTTTTTTAAAGAAT
1 ATTTTTTTTAAAGAAT
8583742 ATTATTTT
1 ATT-TTTT
8583750 ATTTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (16 bp):
ATTTTTTTTAAAGAAT
Found at i:8583781 original size:14 final size:15
Alignment explanation
Indices: 8583754--8583785 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
8583744 TATTTTATTT
8583754 TAATTTATTATTATA
1 TAATTTATTATTATA
8583769 TAATTTA-TATTATA
1 TAATTTATTATTATA
8583783 TAA
1 TAA
8583786 AAGATAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATTTATTATTATA
Found at i:8584966 original size:11 final size:11
Alignment explanation
Indices: 8584950--8584975 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8584940 AGAAAAACAT
8584950 AAAAAATTCTA
1 AAAAAATTCTA
8584961 AAAAAATTCTA
1 AAAAAATTCTA
8584972 AAAA
1 AAAA
8584976 TTTTCAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAAATTCTA
Found at i:8585486 original size:23 final size:22
Alignment explanation
Indices: 8585456--8585499 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
8585446 CGAAACCCAA
8585456 ACTATGAAT-TTTCTTGATTTTT
1 ACTATGAATGTTTCTTG-TTTTT
8585478 ACTAGTGAATGTTTCTTGTTTT
1 ACTA-TGAATGTTTCTTGTTTT
8585500 ATTGGACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.20
23 9 0.45
24 7 0.35
ACGTcount: A:0.20, C:0.09, G:0.14, T:0.57
Consensus pattern (22 bp):
ACTATGAATGTTTCTTGTTTTT
Found at i:8585499 original size:22 final size:21
Alignment explanation
Indices: 8585456--8585500 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
8585446 CGAAACCCAA
8585456 ACTATGAATTTTCTTGATTTTT
1 ACTATGAATTTTCTTGA-TTTT
8585478 ACTAGTGAATGTTTCTTG-TTTT
1 ACTA-TGAAT-TTTCTTGATTTT
8585500 A
1 A
8585501 TTGGACTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.43
23 5 0.24
24 7 0.33
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.56
Consensus pattern (21 bp):
ACTATGAATTTTCTTGATTTT
Found at i:8586525 original size:20 final size:20
Alignment explanation
Indices: 8586475--8586525 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
8586465 TTTTTTAGAA
*
8586475 TTTTAGATTTTTATAAAAAT
1 TTTTAGAATTTTATAAAAAT
*
8586495 TTTTA-ACATTTTA-AAGAATT
1 TTTTAGA-ATTTTATAA-AAAT
8586515 TTTTAGAATTT
1 TTTTAGAATTT
8586526 AGAATTTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 3 0.12
20 22 0.85
21 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (20 bp):
TTTTAGAATTTTATAAAAAT
Found at i:8586567 original size:48 final size:48
Alignment explanation
Indices: 8586467--8586603 Score: 113
Period size: 48 Copynumber: 2.8 Consensus size: 48
8586457 TTTTGAATTT
* *
8586467 TTTTAGAATTTTAGATTTTTATAAAAATTTTTAACATTTTAAAGAATT
1 TTTTAGAATTTTAGATTTTTATAAAAATTTTTAAAATTTTAAAGAATA
* * *
8586515 TTTTAGAA-TTTAGAATTTGTTTTGAAAA-TTTTAAAATTTTTAAG-ATAA
1 TTTTAGAATTTTAG-ATTT-TTATAAAAATTTTTAAAATTTTAAAGAAT-A
* * *
8586563 TTTTAGCAATATTTAAAAATTTT-T-AGAATTTTTAAAATTTT
1 TTTTAG-AAT-TTT-AGATTTTTATAAAAATTTTTAAAATTTT
8586604 TTTGAAGTGA
Statistics
Matches: 73, Mismatches: 8, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
47 7 0.10
48 35 0.48
49 22 0.30
50 2 0.03
51 6 0.08
52 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.52
Consensus pattern (48 bp):
TTTTAGAATTTTAGATTTTTATAAAAATTTTTAAAATTTTAAAGAATA
Found at i:8589170 original size:12 final size:12
Alignment explanation
Indices: 8589155--8589192 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
8589145 ACTAAAATTT
*
8589155 TCACCATCACCA
1 TCACCATCATCA
8589167 TCACCATCATCA
1 TCACCATCATCA
*
8589179 TCATCATCATCA
1 TCACCATCATCA
8589191 TC
1 TC
8589193 TAGACTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.32, C:0.42, G:0.00, T:0.26
Consensus pattern (12 bp):
TCACCATCATCA
Found at i:8589179 original size:3 final size:3
Alignment explanation
Indices: 8589159--8589192 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
8589149 AAATTTTCAC
* *
8589159 CAT CAC CAT CAC CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
8589193 TAGACTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.41, G:0.00, T:0.26
Consensus pattern (3 bp):
CAT
Found at i:8592867 original size:19 final size:20
Alignment explanation
Indices: 8592833--8592872 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8592823 AAAAGAATTG
*
8592833 ACAACAATATAAATATCAAA
1 ACAACAATAAAAATATCAAA
*
8592853 ACAACAA-AAAAATATTAAA
1 ACAACAATAAAAATATCAAA
8592872 A
1 A
8592873 TTCAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (20 bp):
ACAACAATAAAAATATCAAA
Found at i:8593309 original size:18 final size:18
Alignment explanation
Indices: 8593286--8593340 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
8593276 CTTTCTAGAA
*
8593286 TTTTTTTCTTCTCTC-TT
1 TTTTTTTCATCTCTCTTT
*
8593303 TTTTTTTCACCTCTCTTT
1 TTTTTTTCATCTCTCTTT
8593321 TTTTTTTCATCTCTCATTT
1 TTTTTTTCATCTCTC-TTT
8593340 T
1 T
8593341 CTCTTGTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 13 0.39
18 16 0.48
19 4 0.12
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTTCATCTCTCTTT
Found at i:8596098 original size:18 final size:18
Alignment explanation
Indices: 8596077--8596116 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8596067 GATTTTAAGG
*
8596077 AAATT-ATTTCTTTTTTAA
1 AAATTAATTTC-TATTTAA
8596095 AAATTAATTTCTATTTAA
1 AAATTAATTTCTATTTAA
8596113 AAAT
1 AAAT
8596117 CATAAGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
AAATTAATTTCTATTTAA
Found at i:8597226 original size:22 final size:20
Alignment explanation
Indices: 8597191--8597280 Score: 74
Period size: 22 Copynumber: 4.2 Consensus size: 20
8597181 TTGCAATTGA
*
8597191 AAATTTAAACATTCACAATTT
1 AAATTCAAA-ATTCACAATTT
* *
8597212 GAAATTCAAGAATTCTCAACTT
1 -AAATTCAA-AATTCACAATTT
8597234 AAAGTTCAAAAGTTCACAA-TT
1 AAA-TTCAAAA-TTCACAATTT
*
8597255 AAATTCAAAGATTCTCAATTT
1 AAATTCAAA-ATTCACAATTT
*
8597276 GAATT
1 AAATT
8597281 TGAAAGCTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
20 12 0.21
21 17 0.30
22 27 0.47
23 1 0.02
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.34
Consensus pattern (20 bp):
AAATTCAAAATTCACAATTT
Found at i:8597273 original size:20 final size:20
Alignment explanation
Indices: 8597213--8597274 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
8597203 TCACAATTTG
8597213 AAATTC-AAGAATTCTCAACTT
1 AAATTCAAAG-ATTCTCAA-TT
*
8597234 AAAGTTCAAA-AGTTCACAATT
1 AAA-TTCAAAGA-TTCTCAATT
8597255 AAATTCAAAGATTCTCAATT
1 AAATTCAAAGATTCTCAATT
8597275 TGAATTTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
20 14 0.40
21 10 0.29
22 9 0.26
23 2 0.06
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.32
Consensus pattern (20 bp):
AAATTCAAAGATTCTCAATT
Found at i:8597421 original size:19 final size:19
Alignment explanation
Indices: 8597397--8597593 Score: 92
Period size: 18 Copynumber: 10.6 Consensus size: 19
8597387 CCATGATAAT
*
8597397 GATTCAAAGGTTCACAAAA
1 GATTCAAAGATTCACAAAA
*
8597416 GATTCAAA-ATTCGC-AAA
1 GATTCAAAGATTCACAAAA
*
8597433 GAATTCAAAGATTCACAAGA
1 G-ATTCAAAGATTCACAAAA
*
8597453 GATTTCAAAGATTTTA-AAAA
1 GA-TTCAAAGA-TTCACAAAA
* ** **
8597473 -ATTAAAAGATTCGTAACT
1 GATTCAAAGATTCACAAAA
*
8597491 TATTC-AAGATTCAC-AAA
1 GATTCAAAGATTCACAAAA
* *
8597508 GATT-TAAGATTCACAAGA
1 GATTCAAAGATTCACAAAA
**
8597526 GATTTCAAAGA-TCTGTAAAA
1 GA-TTCAAAGATTC-ACAAAA
**
8597546 -ATTC-AAGATTTGCAAAA
1 GATTCAAAGATTCACAAAA
** *
8597563 GATTTCAAAGATTTGCCAAA
1 GA-TTCAAAGATTCACAAAA
8597583 G-TTCAAAGATT
1 GATTCAAAGATT
8597594 GGAAAATTCA
Statistics
Matches: 137, Mismatches: 25, Indels: 33
0.70 0.13 0.17
Matches are distributed among these distances:
17 28 0.20
18 46 0.34
19 26 0.19
20 34 0.25
21 3 0.02
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (19 bp):
GATTCAAAGATTCACAAAA
Found at i:8597518 original size:17 final size:18
Alignment explanation
Indices: 8597496--8597530 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
8597486 TAACTTATTC
8597496 AAGATTCACAA-AGATTT
1 AAGATTCACAAGAGATTT
8597513 AAGATTCACAAGAGATTT
1 AAGATTCACAAGAGATTT
8597531 CAAAGATCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGATTCACAAGAGATTT
Found at i:8597570 original size:73 final size:75
Alignment explanation
Indices: 8597402--8597575 Score: 185
Period size: 73 Copynumber: 2.3 Consensus size: 75
8597392 ATAATGATTC
* * * * *
8597402 AAAGGTTCACAAAAGATTCAAAATTCGCAAAGAATTCAAAGATTCACAAGAGATTTCAAAGATTT
1 AAAGATTCGCAAAAGATTCAAGATTCACAAAGAATTCAAAGATTCACAAGAGATTTCAAAGATTG
8597467 TAAAAAATTA
66 TAAAAAATTA
* *** *
8597477 AAAGATTCGTAACTTATTCAAGATTCACAAAG-ATT-TAAGATTCACAAGAGATTTCAAAGATCT
1 AAAGATTCGCAAAAGATTCAAGATTCACAAAGAATTCAAAGATTCACAAGAGATTTCAAAGAT-T
8597540 GT-AAAAATT-
65 GTAAAAAATTA
* *
8597549 CAAGATTTGCAAAAGATTTCAAAGATT
1 AAAGATTCGCAAAAGA-TTC-AAGATT
8597576 TGCCAAAGTT
Statistics
Matches: 80, Mismatches: 16, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
72 10 0.12
73 35 0.44
74 11 0.14
75 24 0.30
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (75 bp):
AAAGATTCGCAAAAGATTCAAGATTCACAAAGAATTCAAAGATTCACAAGAGATTTCAAAGATTG
TAAAAAATTA
Found at i:8597666 original size:16 final size:16
Alignment explanation
Indices: 8597615--8597684 Score: 81
Period size: 17 Copynumber: 4.3 Consensus size: 16
8597605 AAGAATTCAC
8597615 GATTTGCAAATATTTAA
1 GATTTGCAAA-ATTTAA
*
8597632 G-GTT-CAAAAGTTTAA
1 GATTTGCAAAA-TTTAA
*
8597647 GATTTGCAAAATTCAA
1 GATTTGCAAAATTTAA
8597663 GATTTGCAAAAATTTAA
1 GATTTGC-AAAATTTAA
8597680 GATTT
1 GATTT
8597685 AAAGATTCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.02
15 10 0.22
16 15 0.33
17 19 0.42
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.37
Consensus pattern (16 bp):
GATTTGCAAAATTTAA
Found at i:8597674 original size:17 final size:17
Alignment explanation
Indices: 8597615--8597684 Score: 83
Period size: 16 Copynumber: 4.3 Consensus size: 17
8597605 AAGAATTCAC
*
8597615 GATTTGCAAATATTTAA
1 GATTTGCAAAAATTTAA
* *
8597632 G-GTT-CAAAAGTTTAA
1 GATTTGCAAAAATTTAA
*
8597647 GATTTGC-AAAATTCAA
1 GATTTGCAAAAATTTAA
8597663 GATTTGCAAAAATTTAA
1 GATTTGCAAAAATTTAA
8597680 GATTT
1 GATTT
8597685 AAAGATTCGC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
15 10 0.23
16 18 0.42
17 15 0.35
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.37
Consensus pattern (17 bp):
GATTTGCAAAAATTTAA
Found at i:8597679 original size:33 final size:32
Alignment explanation
Indices: 8597615--8597684 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 32
8597605 AAGAATTCAC
* *
8597615 GATTTGCAAATATTTAAGGTTCAAAAGTTTAA
1 GATTTGCAAATATTCAAGGTTCAAAAATTTAA
*
8597647 GATTTGCAAA-ATTCAAGATTTGCAAAAATTTAA
1 GATTTGCAAATATTCAAG-GTT-CAAAAATTTAA
8597680 GATTT
1 GATTT
8597685 AAAGATTCGC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 6 0.18
32 12 0.36
33 15 0.45
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.37
Consensus pattern (32 bp):
GATTTGCAAATATTCAAGGTTCAAAAATTTAA
Found at i:8597748 original size:44 final size:43
Alignment explanation
Indices: 8597698--8597922 Score: 294
Period size: 44 Copynumber: 5.2 Consensus size: 43
8597688 GATTCGCAAG
* *
8597698 GATTCAAAGATTCACATTCGAAAATTTTAGAGATTGACATCCAA
1 GATTCAAAGATTCACATTC-AAAATCTTAGAGATTCACATCCAA
*
8597742 GATTCAAAG-TTCACATTCAAAATCTTAGAGATTAACATCCAA
1 GATTCAAAGATTCACATTCAAAATCTTAGAGATTCACATCCAA
* *
8597784 AATTCAAA-AGTTCTCATTCGAAAATCTTAGAGATTCACATCCAA
1 GATTCAAAGA-TTCACATTC-AAAATCTTAGAGATTCACATCCAA
* * *
8597828 AATTCAAAGATTCACATTAAAAAATCTTAGGGATTCACATCCAA
1 GATTCAAAGATTCACATT-CAAAATCTTAGAGATTCACATCCAA
* *
8597872 GATTCAAAGGTTTACATTCAAAATCTTAGAGATTCACATCCGAA
1 GATTCAAAGATTCACATTCAAAATCTTAGAGATTCACATCC-AA
8597916 -ATTCAAA
1 GATTCAAA
8597923 TATTTTTATT
Statistics
Matches: 162, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
42 29 0.18
43 45 0.28
44 87 0.54
45 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (43 bp):
GATTCAAAGATTCACATTCAAAATCTTAGAGATTCACATCCAA
Found at i:8598168 original size:108 final size:107
Alignment explanation
Indices: 8598012--8598221 Score: 287
Period size: 109 Copynumber: 2.0 Consensus size: 107
8598002 CGATATTTCT
* * * * * *
8598012 TATTTAAAAACTTTAGGATTTCATCTAAAATTTCAAAGCTTCTTATTCGAGTT-CAAAATTCACA
1 TATTAAAAAAATTTAGGATTACATCCAAAATTTCAAAGCTTCTCATTCGAGTTAAAAAATTCACA
* * *
8598076 TTTAATAGATTTTAAAGTTTCACATCTTAATTCAAAGGTTCC
66 TTCAATAAATTTTAAAGTTTCACATCTAAATTCAAAGGTTCC
*
8598118 TATTAAAAAAATTTAGGGATTCACATCCAAAATTTCAAAGCTTCTCATTCGAGTTAAAAAATTTA
1 TATTAAAAAAATTTA-GGATT-ACATCCAAAATTTCAAAGCTTCTCATTCGAGTTAAAAAATTCA
* *
8598183 TATTCGATAAATTTTAAAGTTTCACATCTAAATTCAAAG
64 CATTCAATAAATTTTAAAGTTTCACATCTAAATTCAAAG
8598222 ATTCTCATTT
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
106 13 0.15
107 5 0.06
108 30 0.34
109 41 0.46
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (107 bp):
TATTAAAAAAATTTAGGATTACATCCAAAATTTCAAAGCTTCTCATTCGAGTTAAAAAATTCACA
TTCAATAAATTTTAAAGTTTCACATCTAAATTCAAAGGTTCC
Found at i:8598250 original size:24 final size:24
Alignment explanation
Indices: 8598218--8598368 Score: 154
Period size: 24 Copynumber: 6.5 Consensus size: 24
8598208 ATCTAAATTC
8598218 AAAGATTCTCATTTAAAACTTCTT
1 AAAGATTCTCATTTAAAACTTCTT
**
8598242 AAAGATTCTCATTTAAAA-GAC--
1 AAAGATTCTCATTTAAAACTTCTT
* * *
8598263 AAAGGTTCTCATTCAAAACTCCTT
1 AAAGATTCTCATTTAAAACTTCTT
* *
8598287 AAAGATTTTCGTTTAAAAC-TC--
1 AAAGATTCTCATTTAAAACTTCTT
*
8598308 AAAGATTCTCATTTAAAACTTCCT
1 AAAGATTCTCATTTAAAACTTCTT
* *
8598332 AAAGATTCTCTTTTAACAC-TCTTT
1 AAAGATTCTCATTTAAAACTTC-TT
8598356 AAAGATTCTCATT
1 AAAGATTCTCATT
8598369 GTTTTTAACT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
21 33 0.32
22 3 0.03
23 4 0.04
24 63 0.61
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.38
Consensus pattern (24 bp):
AAAGATTCTCATTTAAAACTTCTT
Found at i:8598266 original size:109 final size:108
Alignment explanation
Indices: 8598045--8598276 Score: 243
Period size: 109 Copynumber: 2.1 Consensus size: 108
8598035 TCTAAAATTT
* * * * *
8598045 CAAAGCTTCTTATTCGAGTTCAAAATTCACATTTAATAGATTTTAAAGTTTCACATCTTAATTCA
1 CAAAGCTTCTCATTCGAGTTAAAAATTCACATTCAATAAATTTTAAAGTTTCACATCTAAATTCA
* ** **
8598110 AAGGTTCCTATTAAAAAAATTTAGGGATTCACATCCAAAATTT
66 AAGATTCCTATTAAAAAAATTTAAAGATTCACATCCAAAATGA
* * *
8598153 CAAAGCTTCTCATTCGAGTTAAAAAATTTATATTCGATAAATTTTAAAGTTTCACATCTAAATTC
1 CAAAGCTTCTCATTCGAGTT-AAAAATTCACATTCAATAAATTTTAAAGTTTCACATCTAAATTC
* ** * **
8598218 AAAGATT-CTCATTTAAAACTTCTTAAAGATTCTCATTTAAAA-GA
65 AAAGATTCCT-ATTAAAAAAAT-TTAAAGATTCACATCCAAAATGA
*
8598262 CAAAGGTTCTCATTC
1 CAAAGCTTCTCATTC
8598277 AAAACTCCTT
Statistics
Matches: 101, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
108 21 0.21
109 65 0.64
110 15 0.15
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (108 bp):
CAAAGCTTCTCATTCGAGTTAAAAATTCACATTCAATAAATTTTAAAGTTTCACATCTAAATTCA
AAGATTCCTATTAAAAAAATTTAAAGATTCACATCCAAAATGA
Found at i:8598272 original size:45 final size:45
Alignment explanation
Indices: 8598217--8598347 Score: 181
Period size: 45 Copynumber: 2.9 Consensus size: 45
8598207 CATCTAAATT
*
8598217 CAAAGATTCTCATTTAAAACTTCTTAAAGATTCTCATTTAAAAGA
1 CAAAGATTCTCATTTAAAACTTCTTAAAGATTCTCATTTAAAACA
* * * * * *
8598262 CAAAGGTTCTCATTCAAAACTCCTTAAAGATTTTCGTTTAAAACT
1 CAAAGATTCTCATTTAAAACTTCTTAAAGATTCTCATTTAAAACA
* *
8598307 CAAAGATTCTCATTTAAAACTTCCTAAAGATTCTCTTTTAA
1 CAAAGATTCTCATTTAAAACTTCTTAAAGATTCTCATTTAA
8598348 CACTCTTTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.37
Consensus pattern (45 bp):
CAAAGATTCTCATTTAAAACTTCTTAAAGATTCTCATTTAAAACA
Found at i:8598693 original size:24 final size:24
Alignment explanation
Indices: 8598666--8598715 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
8598656 ATGTTCTTTG
*
8598666 CATGATGCAAATGCATGTCCAAAA
1 CATGATGCAAATCCATGTCCAAAA
*
8598690 CATGATGCAAATCCGTGTCCAAAA
1 CATGATGCAAATCCATGTCCAAAA
8598714 CA
1 CA
8598716 AAATTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.20
Consensus pattern (24 bp):
CATGATGCAAATCCATGTCCAAAA
Found at i:8599559 original size:8 final size:8
Alignment explanation
Indices: 8599548--8599601 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
8599538 TTTTATATTT
8599548 TTTTTTCA
1 TTTTTTCA
8599556 -TTTTTCA
1 TTTTTTCA
8599563 TTTTTTCA
1 TTTTTTCA
* *
8599571 CTTTTTAA
1 TTTTTTCA
8599579 TTTTGTTCA
1 TTTT-TTCA
8599588 -TTTTTCA
1 TTTTTTCA
*
8599595 CTTTTTC
1 TTTTTTC
8599602 TTCATTCATT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
7 11 0.28
8 25 0.64
9 3 0.08
ACGTcount: A:0.13, C:0.15, G:0.02, T:0.70
Consensus pattern (8 bp):
TTTTTTCA
Found at i:8603631 original size:119 final size:120
Alignment explanation
Indices: 8603496--8603717 Score: 258
Period size: 119 Copynumber: 1.9 Consensus size: 120
8603486 TATGGAAAAT
* * * *
8603496 ATTTCTTTTCTAAAAATTAAT-TTTTATTTAA-AA-ATCATAAGGTTTTCAAATATATTGGTAGA
1 ATTTCTTTTCTAAAAATT--TGTTTT-TTTAATAATATAATAACGTTCTCAAATATATTGGTAAA
8603558 ACCTTATCTT-AAAAATCAAATTGCC-TTCTAATATGTTGGTACGGCTTTATTGAAAACA
63 ACCTTAT-TTCAAAAATCAAATTGCCTTTC-AATATGTTGGTACGGCTTTATTGAAAACA
* * *
8603616 ATTT-TTTTCTTAAAATTTGTTTTTTTAATAATTTAATAACGTTCTCCAATATATTGGTAAAACC
1 ATTTCTTTTCTAAAAATTTGTTTTTTTAATAATATAATAACGTTCTCAAATATATTGGTAAAACC
* * **
8603680 TTATTTCAAAGATCTAATTTTCTTTCAATATGTTGGTA
66 TTATTTCAAAAATCAAATTGCCTTTCAATATGTTGGTA
8603718 AGGCATTTTA
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
117 6 0.07
118 8 0.09
119 65 0.76
120 7 0.08
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.45
Consensus pattern (120 bp):
ATTTCTTTTCTAAAAATTTGTTTTTTTAATAATATAATAACGTTCTCAAATATATTGGTAAAACC
TTATTTCAAAAATCAAATTGCCTTTCAATATGTTGGTACGGCTTTATTGAAAACA
Found at i:8604588 original size:22 final size:22
Alignment explanation
Indices: 8604558--8604599 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8604548 TTTAAAATAT
*
8604558 TATTTAAATAATATAAAATTCA
1 TATTAAAATAATATAAAATTCA
* *
8604580 TATTAAAATATTATTAAATT
1 TATTAAAATAATATAAAATT
8604600 TAGATTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TATTAAAATAATATAAAATTCA
Found at i:8604612 original size:21 final size:21
Alignment explanation
Indices: 8604558--8604871 Score: 121
Period size: 21 Copynumber: 14.5 Consensus size: 21
8604548 TTTAAAATAT
* * *
8604558 TATTTAAATAATATAAAATTCA
1 TATTT-AATATTATTAAATTTA
*
8604580 TATTAAAATATTATTAAATTTA
1 TATT-TAATATTATTAAATTTA
* * * *
8604602 GATTTAATATTGTCATA-TTA
1 TATTTAATATTATTAAATTTA
**
8604622 GTATTTAATATTATTAAATCAA
1 -TATTTAATATTATTAAATTTA
* **
8604644 TATTTAATATTACTAAATCAA
1 TATTTAATATTATTAAATTTA
* * *
8604665 TATTCAATATTTTTAAATTAA
1 TATTTAATATTATTAAATTTA
*
8604686 AATTTAATA-TATTAAA-TTA
1 TATTTAATATTATTAAATTTA
8604705 TTATTTAAT-TATATTAATATTTAA
1 -TATTTAATAT-TATTAA-ATTT-A
8604729 TATTTAATA-T-TTAACA--T-
1 TATTTAATATTATTAA-ATTTA
* *
8604746 TATTGAATAATAGTT-AATATTA
1 TATTTAATATTA-TTAAAT-TTA
* *
8604768 TTAAATTAATATTTAATAATATGAAATTA
1 -T-ATTTAATA-TT-AT--TA--AATTTA
* *
8604797 CTATTTAATATTATTCAATTAA
1 -TATTTAATATTATTAAATTTA
*
8604819 TATTGAATATTATTAAA-TTA
1 TATTTAATATTATTAAATTTA
*
8604839 -ATTTGGAATATTATTAAATTAA
1 TATTT--AATATTATTAAATTTA
*
8604861 TATTTATTATT
1 TATTTAATATT
8604872 TATTTTCATT
Statistics
Matches: 220, Mismatches: 42, Indels: 61
0.68 0.13 0.19
Matches are distributed among these distances:
17 8 0.04
18 2 0.01
19 7 0.03
20 20 0.09
21 110 0.50
22 29 0.13
23 15 0.07
24 8 0.04
25 2 0.01
26 3 0.01
27 3 0.01
28 7 0.03
29 4 0.02
30 2 0.01
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
TATTTAATATTATTAAATTTA
Found at i:8604638 original size:42 final size:41
Alignment explanation
Indices: 8604586--8604872 Score: 229
Period size: 42 Copynumber: 6.7 Consensus size: 41
8604576 TTCATATTAA
* * * *
8604586 AATATTATTAAATTTAGATTTAATATTGTCATATTAGTATTT
1 AATATTATTAAATTAATATTTAATATT-TCAAATTAATATTT
* * * *
8604628 AATATTATTAAATCAATATTTAATATTACTAAATCAATATTC
1 AATATTATTAAATTAATATTTAATATTTC-AAATTAATATTT
* * *
8604670 AATATTTTTAAATTAAAATTTAATATATT-AAATTATTATTT
1 AATATTATTAAATTAATATTTAATAT-TTCAAATTAATATTT
*
8604711 AAT-TATATTAATATTTAATATTTAATATTTAACATTATTGAATAATAGTT
1 AATAT-TATTAA-A-TTAATATTTAATATTT--CA-AATT-AAT-AT--TT
* * *
8604761 AATATTATTAAATTAATATTTAATAATATGAAATTACTATTT
1 AATATTATTAAATTAATATTTAAT-ATTTCAAATTAATATTT
* * * *
8604803 AATATTATTCAATTAATATTGAATATTATTAAATTAAT-TTGG
1 AATATTATTAAATTAATATTTAATATT-TCAAATTAATATT-T
*
8604845 AATATTATTAAATTAATATTTATTATTT
1 AATATTATTAAATTAATATTTAATATTT
8604873 ATTTTCATTA
Statistics
Matches: 196, Mismatches: 32, Indels: 35
0.75 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 23 0.12
42 114 0.58
43 14 0.07
44 2 0.01
45 3 0.02
46 6 0.03
47 3 0.02
48 14 0.07
49 4 0.02
50 11 0.06
51 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (41 bp):
AATATTATTAAATTAATATTTAATATTTCAAATTAATATTT
Found at i:8604652 original size:7 final size:7
Alignment explanation
Indices: 8604603--8604742 Score: 64
Period size: 7 Copynumber: 19.9 Consensus size: 7
8604593 TTAAATTTAG
8604603 ATTTAAT
1 ATTTAAT
*
8604610 ATTGTCAT
1 ATT-TAAT
*
8604618 A-TTAGT
1 ATTTAAT
8604624 ATTTAAT
1 ATTTAAT
8604631 ATTATTAA-
1 A-T-TTAAT
*
8604639 A-TCAAT
1 ATTTAAT
8604645 ATTTAAT
1 ATTTAAT
8604652 ATTACTAA-
1 ATT--TAAT
*
8604660 A-TCAAT
1 ATTTAAT
*
8604666 ATTCAAT
1 ATTTAAT
8604673 ATTTTTAA-
1 A--TTTAAT
*
8604681 A-TTAAA
1 ATTTAAT
8604687 ATTTAAT
1 ATTTAAT
8604694 ATATTAA-
1 AT-TTAAT
*
8604701 A-TTATT
1 ATTTAAT
8604707 ATTTAATT
1 ATTTAA-T
8604715 ATATTAAT
1 AT-TTAAT
8604723 ATTTAAT
1 ATTTAAT
8604730 ATTTAAT
1 ATTTAAT
8604737 ATTTAA
1 ATTTAA
8604743 CATTATTGAA
Statistics
Matches: 103, Mismatches: 11, Indels: 38
0.68 0.07 0.25
Matches are distributed among these distances:
5 12 0.12
6 7 0.07
7 51 0.50
8 18 0.17
9 15 0.15
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (7 bp):
ATTTAAT
Found at i:8604720 original size:16 final size:16
Alignment explanation
Indices: 8604696--8604742 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
8604686 AATTTAATAT
* *
8604696 ATTAAATTATTATTTA
1 ATTATATTAATATTTA
8604712 ATTATATTAATATTTA
1 ATTATATTAATATTTA
8604728 A-TAT-TTAATATTTA
1 ATTATATTAATATTTA
8604742 A
1 A
8604743 CATTATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 11 0.38
15 3 0.10
16 15 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTATATTAATATTTA
Found at i:8604723 original size:71 final size:73
Alignment explanation
Indices: 8604633--8604799 Score: 166
Period size: 71 Copynumber: 2.3 Consensus size: 73
8604623 TATTTAATAT
* * * *
8604633 TATTAAATCAATATTTAATATTACTAA-A-TCAATATTCAATATTTTTAAATTAAAATTTAATA-
1 TATTTAAT-AATA-TTAATATTACTAATATTCAATATTCAACATTATTAAA-TAAAAGTTAATAT
*
8604695 TATTAAATTAT
63 TATTAAATTAA
* * * * *
8604706 TATTTAATTATATTAATATT--TAATATTTAATATTTAACATTATTGAATAATAGTTAATATTAT
1 TATTTAATAATATTAATATTACTAATATTCAATATTCAACATTATTAAATAAAAGTTAATATTAT
8604769 TAAATTAA
66 TAAATTAA
*
8604777 TATTTAATAATATGAA-ATTACTA
1 TATTTAATAATATTAATATTACTA
8604800 TTTAATATTA
Statistics
Matches: 77, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
69 3 0.04
70 14 0.18
71 48 0.62
72 5 0.06
73 7 0.09
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.48
Consensus pattern (73 bp):
TATTTAATAATATTAATATTACTAATATTCAATATTCAACATTATTAAATAAAAGTTAATATTAT
TAAATTAA
Found at i:8604859 original size:63 final size:62
Alignment explanation
Indices: 8604732--8604871 Score: 176
Period size: 63 Copynumber: 2.2 Consensus size: 62
8604722 TATTTAATAT
* * *
8604732 TTAATATTTAACATTATTGAATAATAGTTAATATTATTAAATTAATATTTAATAATATGAAA
1 TTAATATTTAATATTATTCAATAATAGTTAATATTATTAAATTAATATTGAATAATATGAAA
* * *
8604794 TTACTATTTAATATTATTCAATTAATA-TTGAATATTATTAAATTAAT-TTGGAATATTATTAAA
1 TTAATATTTAATATTATTCAA-TAATAGTT-AATATTATTAAATTAATATT-GAATAATATGAAA
*
8604857 TTAATATTTATTATT
1 TTAATATTTAATATT
8604872 TATTTTCATT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
62 22 0.33
63 45 0.67
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (62 bp):
TTAATATTTAATATTATTCAATAATAGTTAATATTATTAAATTAATATTGAATAATATGAAA
Found at i:8604963 original size:22 final size:23
Alignment explanation
Indices: 8604919--8604965 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
8604909 AGCAAAATGG
**
8604919 TTTTTAAACTAATTCCATCCATAT
1 TTTTTAAACTAA-TCCAAACATAT
8604943 TTTTTAAACTAA-CCAAACATAT
1 TTTTTAAACTAATCCAAACATAT
8604965 T
1 T
8604966 AATAATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
24 12 0.57
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTTTAAACTAATCCAAACATAT
Found at i:8624607 original size:145 final size:145
Alignment explanation
Indices: 8624325--8624743 Score: 477
Period size: 145 Copynumber: 2.9 Consensus size: 145
8624315 TCATTTTTTG
* * * * **
8624325 GATTTTAAA-ACACCAAAAATTATGAAATATTATAAAATTAAGATCTTAAAAGTTTCATAAAAAT
1 GATTTCAAATACACTAAAAATCATGAAATATTATGAAATTAAGATCCAAAAAGTTTCATAAAAAT
** * * * *
8624389 CCAAGCTCAGGAAGGTTAAATTATGAAAATACCCTTATCAGGGTATTTTGGTAATTTTACACTTT
66 CTGAGCTCAAGAAGGTTAAATTATGAAAATACCCTTATCAGGGTATTTTAGTAATTTTAAACTTC
*
8624454 TTAAGGTACTACTAT
131 TCAAGGTACTACTAT
** * *
8624469 GATTTCAAATGTA-TAAAAAATCATGAAACATTATGAAATTAAGATCCAAAAAGTTTCATTAAAA
1 GATTTCAAATACACT-AAAAATCATGAAATATTATGAAATTAAGATCCAAAAAGTTTCATAAAAA
* *
8624533 TTTGAGCTCAAGAAGGTTAAATTATGAAAATACCCTT-TTAGGGGTATTTTAGTAATTTTAAACT
65 TCTGAGCTCAAGAAGGTTAAATTATGAAAATACCCTTATCA-GGGTATTTTAGTAATTTTAAACT
** *
8624597 TCTCGGGGTACTGCTAT
129 TCTCAAGGTACTACTAT
* * *
8624614 GATTTCAAATACACTAAAAATCATGAAATATTATGAAATTAAGATCCAGAAGGTTTCATGAAAAT
1 GATTTCAAATACACTAAAAATCATGAAATATTATGAAATTAAGATCCAAAAAGTTTCATAAAAAT
* * ** * * * *
8624679 CTGAGCTCAAGAAGGTCAAAATACAAAAATATCCTTTATGAGGATATTTT-GATAATTTTATACT
66 CTGAGCTCAAGAAGGTTAAATTATGAAAATA-CCCTTATCAGGGTATTTTAG-TAATTTTAAACT
8624743 T
129 T
8624744 TCCCAATGCA
Statistics
Matches: 231, Mismatches: 37, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
144 10 0.04
145 194 0.84
146 25 0.11
147 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.34
Consensus pattern (145 bp):
GATTTCAAATACACTAAAAATCATGAAATATTATGAAATTAAGATCCAAAAAGTTTCATAAAAAT
CTGAGCTCAAGAAGGTTAAATTATGAAAATACCCTTATCAGGGTATTTTAGTAATTTTAAACTTC
TCAAGGTACTACTAT
Found at i:8629816 original size:20 final size:20
Alignment explanation
Indices: 8629786--8629839 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
8629776 TTTTGACACA
*
8629786 AGTGTATGACACAGTT-AGTT
1 AGTGCATGACACAGTTGA-TT
* * *
8629806 GGTGCATGACATAATTGATT
1 AGTGCATGACACAGTTGATT
8629826 AGTGCATGACACAG
1 AGTGCATGACACAG
8629840 AGCTGGTTAA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (20 bp):
AGTGCATGACACAGTTGATT
Found at i:8630583 original size:45 final size:45
Alignment explanation
Indices: 8630498--8630584 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
8630488 CGGTATGTGA
* * * * * *
8630498 CGATGGTGGTCGAGGCAAGTGCTCGTACCAAGGGCTAGCTTGCAC
1 CGATGGTGCTCAAGGCAAGTGCCCATACCAAAGGCCAGCTTGCAC
* *
8630543 CGATGGTGCTCAAGGTAAGTGCCCATACCAAAGTCCAGCTTG
1 CGATGGTGCTCAAGGCAAGTGCCCATACCAAAGGCCAGCTTG
8630585 TGTCAATGAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (45 bp):
CGATGGTGCTCAAGGCAAGTGCCCATACCAAAGGCCAGCTTGCAC
Found at i:8640896 original size:45 final size:45
Alignment explanation
Indices: 8640803--8640902 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 45
8640793 ATGGTAATCG
* * * * * *
8640803 AGGCAAGTGCCCATACCAAGAGCTAGTTTATGTCGATGGTGGTCA
1 AGGCAAGTGCCCATACCAAGAGCCAGCTTATGCCAATGATGGTAA
*
8640848 AGGCAAGTGCCCATACCAA-AGTCCAGCTTGTGCCAATGATGGTAA
1 AGGCAAGTGCCCATACCAAGAG-CCAGCTTATGCCAATGATGGTAA
*
8640893 AGGCATGTGC
1 AGGCAAGTGC
8640903 TTGCACCATG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 2 0.04
45 44 0.96
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (45 bp):
AGGCAAGTGCCCATACCAAGAGCCAGCTTATGCCAATGATGGTAA
Found at i:8666286 original size:26 final size:26
Alignment explanation
Indices: 8666250--8666305 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
8666240 TTTAAAAGCT
*
8666250 ATAAAAATGGCATTGGCATGGTAGAA
1 ATAAAAATGGCATTAGCATGGTAGAA
8666276 ATAAAAATGGCATTAGCATGGTAGAA
1 ATAAAAATGGCATTAGCATGGTAGAA
8666302 ATAA
1 ATAA
8666306 GAAGATGCGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.23, T:0.23
Consensus pattern (26 bp):
ATAAAAATGGCATTAGCATGGTAGAA
Found at i:8670038 original size:45 final size:44
Alignment explanation
Indices: 8669987--8670079 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 44
8669977 CTCTAGGCCC
8669987 TTCCATGCCTACATG-CTTGGCCTATTTTCAGGCTCCTTTTAACCT
1 TTCCATGCCT--ATGACTTGGCCTATTTTCAGGCTCCTTTTAACCT
* *
8670032 TTCCATGCCTGTGCACTTGGCCTATTTTTAGGCTCCTTTTAACCT
1 TTCCATGCCTATG-ACTTGGCCTATTTTCAGGCTCCTTTTAACCT
8670077 TTC
1 TTC
8670080 AGGCTCCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 2 0.05
45 42 0.95
ACGTcount: A:0.14, C:0.30, G:0.14, T:0.42
Consensus pattern (44 bp):
TTCCATGCCTATGACTTGGCCTATTTTCAGGCTCCTTTTAACCT
Found at i:8670085 original size:19 final size:19
Alignment explanation
Indices: 8670061--8670097 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8670051 GCCTATTTTT
8670061 AGGCTCCTTTTAACCTTTC
1 AGGCTCCTTTTAACCTTTC
8670080 AGGCTCCTTTTAACCTTT
1 AGGCTCCTTTTAACCTTT
8670098 ACATGCTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.30, G:0.11, T:0.43
Consensus pattern (19 bp):
AGGCTCCTTTTAACCTTTC
Found at i:8680875 original size:13 final size:13
Alignment explanation
Indices: 8680834--8680866 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
8680824 GCATGTGCCC
8680834 ACACCATACGCCA
1 ACACCATACGCCA
*
8680847 ACACCATACACCA
1 ACACCATACGCCA
8680860 ACACCAT
1 ACACCAT
8680867 GTGCCAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.45, G:0.03, T:0.09
Consensus pattern (13 bp):
ACACCATACGCCA
Found at i:8685851 original size:75 final size:77
Alignment explanation
Indices: 8685751--8685893 Score: 193
Period size: 76 Copynumber: 1.9 Consensus size: 77
8685741 GTCTGACCAT
* * * *
8685751 AAGGGCGACCAGGCCATTGAGGCCTACT-GGAGACCCAGGTTATA-GAACTAGCACAAAATAGTG
1 AAGGGCGACCAAGCCATTGAGGCCTACTAGAAG-CCCAGGTCATAGGAACTAGCACAAAACAGTG
8685814 GTATTTTGATTGC
65 GTATTTTGATTGC
* * *
8685827 AAGGGTGACCAAGCC-TTGAGGCCTACTATAAGCCCATGTCATAGGAACTAGCACAAAACAGTGG
1 AAGGGCGACCAAGCCATTGAGGCCTACTAGAAGCCCAGGTCATAGGAACTAGCACAAAACAGTGG
8685891 TAT
66 TAT
8685894 GGATGGTGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
75 21 0.36
76 37 0.64
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (77 bp):
AAGGGCGACCAAGCCATTGAGGCCTACTAGAAGCCCAGGTCATAGGAACTAGCACAAAACAGTGG
TATTTTGATTGC
Found at i:8692056 original size:46 final size:45
Alignment explanation
Indices: 8691985--8692071 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 45
8691975 GCAAGTGCCC
* *
8691985 ACACCAAGTGCTAGCATCTAGTAATGGTGTTCGAGGTAACATCCT
1 ACACCAAGGGCTAGCATCTAGTAATGGTGTTCGAGGCAACATCCT
*
8692030 ACACCAAGGGGCTAGTATCT-GTTAATGGTGTTCGAGGCAACA
1 ACACCAA-GGGCTAGCATCTAG-TAATGGTGTTCGAGGCAACA
8692072 ACGAGCTAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
45 8 0.22
46 29 0.78
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (45 bp):
ACACCAAGGGCTAGCATCTAGTAATGGTGTTCGAGGCAACATCCT
Found at i:8702595 original size:24 final size:26
Alignment explanation
Indices: 8702563--8702616 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
8702553 TGGGACTGTG
8702563 TTTAATG-AA-AAAGGAGGCCTTTTT
1 TTTAATGAAAGAAAGGAGGCCTTTTT
*
8702587 TTTAATGAAAAGAAAGGTGGCCTTTTT
1 TTTAATG-AAAGAAAGGAGGCCTTTTT
8702614 TTT
1 TTT
8702617 CTACCATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 7 0.27
26 2 0.08
27 17 0.65
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (26 bp):
TTTAATGAAAGAAAGGAGGCCTTTTT
Found at i:8702800 original size:102 final size:102
Alignment explanation
Indices: 8702619--8702902 Score: 381
Period size: 102 Copynumber: 2.8 Consensus size: 102
8702609 TTTTTTTTCT
* ** *
8702619 ACCATTTGGGCAATAAAAGGCCATGGCATGGGGATCATGTTGGCTTT-TGTTGTATATTTCTTAT
1 ACCATTTAGGCAGCAAAAGGCCATGGCATGGGGATCATGTTGGCTTTCT-TTGTATATTTCTTCT
** *
8702683 TTGCATTCCCATGGTTTGGTTTAAAATGGGATGCTAAC
65 TTGCATTCCTGTGGTTTGGTTTAAAATGGGATGCCAAC
* ** *
8702721 ACCATTTAGGCAGCAAAAAGCCATGGTGTGGGGACCATGTTGGCTTTCTTTGTATATTTCTTCTT
1 ACCATTTAGGCAGCAAAAGGCCATGGCATGGGGATCATGTTGGCTTTCTTTGTATATTTCTTCTT
* *
8702786 TACATTCTTGTGGTTTGGTTTAAAATGGGATGCCAAC
66 TGCATTCCTGTGGTTTGGTTTAAAATGGGATGCCAAC
* ** * *
8702823 ACCATTAAGGTGGCAAACGGCCATGGCATGGGGATCATGTTGGCTTTCTTTGTATATTTCCTCTT
1 ACCATTTAGGCAGCAAAAGGCCATGGCATGGGGATCATGTTGGCTTTCTTTGTATATTTCTTCTT
*
8702888 TGTATTCCTGTGGTT
66 TGCATTCCTGTGGTT
8702903 GTTTGTAAAT
Statistics
Matches: 156, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
102 155 0.99
103 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (102 bp):
ACCATTTAGGCAGCAAAAGGCCATGGCATGGGGATCATGTTGGCTTTCTTTGTATATTTCTTCTT
TGCATTCCTGTGGTTTGGTTTAAAATGGGATGCCAAC
Found at i:8703125 original size:13 final size:14
Alignment explanation
Indices: 8703096--8703122 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8703086 ATTATAATTT
8703096 TTTTTATGGTTAAA
1 TTTTTATGGTTAAA
8703110 TTTTTATGGTTAA
1 TTTTTATGGTTAA
8703123 TTTAATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (14 bp):
TTTTTATGGTTAAA
Found at i:8703529 original size:13 final size:14
Alignment explanation
Indices: 8703511--8703553 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
8703501 ATTTGTATCT
8703511 TTAAAAAATTAA-A
1 TTAAAAAATTAATA
8703524 TTAAAAAAATTAATTA
1 TT-AAAAAATTAA-TA
8703540 TTAAAAAA-TAATA
1 TTAAAAAATTAATA
8703553 T
1 T
8703554 GATTAATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.19
14 13 0.48
15 6 0.22
16 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TTAAAAAATTAATA
Found at i:8711893 original size:49 final size:49
Alignment explanation
Indices: 8711821--8711919 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
8711811 CTGGTTGTTG
* *
8711821 GCTAGCAATGTCACTCTGGGATGCCATCTCTTCGATTATGATCTAACTT
1 GCTAGCAACGTCACTCTGGGATGCCATCTCTTCGACTATGATCTAACTT
*
8711870 GCTAGCAACGTCACTCTGGGATGCCATCTCTTTGACTATGATCTAACTT
1 GCTAGCAACGTCACTCTGGGATGCCATCTCTTCGACTATGATCTAACTT
8711919 G
1 G
8711920 AACAACACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.33
Consensus pattern (49 bp):
GCTAGCAACGTCACTCTGGGATGCCATCTCTTCGACTATGATCTAACTT
Found at i:8713082 original size:28 final size:26
Alignment explanation
Indices: 8713051--8713110 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
8713041 AAACTCCTTT
* *
8713051 TAAAAATATTTCAAAAACTCATGAACCA
1 TAAAAACATTT-AAAAA-TCATGAAACA
* *
8713079 TAAAAACCTTTAAAAATCATGAAATA
1 TAAAAACATTTAAAAATCATGAAACA
8713105 TAAAAA
1 TAAAAA
8713111 ATACGTCATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.50
27 5 0.18
28 9 0.32
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.25
Consensus pattern (26 bp):
TAAAAACATTTAAAAATCATGAAACA
Found at i:8714202 original size:22 final size:22
Alignment explanation
Indices: 8714177--8714226 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
8714167 TAAAAGGTAA
* *
8714177 CATGTACCGATAATGGTCAAGG
1 CATGTACCAATAATGGTCAAGC
* * *
8714199 CATGTGCTAATGATGGTCAAGC
1 CATGTACCAATAATGGTCAAGC
8714221 CATGTA
1 CATGTA
8714227 TCAAGACCAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (22 bp):
CATGTACCAATAATGGTCAAGC
Found at i:8732598 original size:10 final size:10
Alignment explanation
Indices: 8732583--8732613 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8732573 AAGTGCCAGT
*
8732583 AGCAAGGGCC
1 AGCAAGTGCC
8732593 AGCAAGTGCC
1 AGCAAGTGCC
8732603 AGCAAGTGCC
1 AGCAAGTGCC
8732613 A
1 A
8732614 ATGGTATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.32, C:0.29, G:0.32, T:0.06
Consensus pattern (10 bp):
AGCAAGTGCC
Found at i:8748657 original size:63 final size:66
Alignment explanation
Indices: 8748576--8748717 Score: 172
Period size: 64 Copynumber: 2.3 Consensus size: 66
8748566 AAATTGAAGA
* * *
8748576 GGATTATTTAAGGCA-TTTTTAGCCTAAAACATCTTGAATAATCT-CTTTCA-ATTTTTATAAAA
1 GGATTATTCAAGGCATTTTTTAACCAAAAACATCTTGAATAATCTCCTTTCATATTTTTATAAAA
8748638 G
66 G
* * * *
8748639 GGATTATTCAAGGTATTTTTTAACCAAAAACGTCTTGAATAGTCTCCTTTCATATTTTT-T---G
1 GGATTATTCAAGGCATTTTTTAACCAAAAACATCTTGAATAATCTCCTTTCATATTTTTATAAAA
8748700 G
66 G
8748701 GGATTATTCAAGGCATT
1 GGATTATTCAAGGCATT
8748718 GTTGGCCAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
62 17 0.25
63 13 0.19
64 25 0.37
65 7 0.10
66 6 0.09
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (66 bp):
GGATTATTCAAGGCATTTTTTAACCAAAAACATCTTGAATAATCTCCTTTCATATTTTTATAAAA
G
Found at i:8748730 original size:62 final size:61
Alignment explanation
Indices: 8748576--8748846 Score: 174
Period size: 63 Copynumber: 4.3 Consensus size: 61
8748566 AAATTGAAGA
* *
8748576 GGATTATTTAAGGCATTTTTAGCCTAAAACATCTTGAATAATCTCTTTCAATTTTTATAAAAG
1 GGATTATTCAAGGCATTTTTAGCCAAAAACATCTTGAATAATCTCTTTCAATTTTTAT--AAG
* * * * *
8748639 GGATTATTCAAGGTATTTTTTAACCAAAAACGTCTTGAATAGTCTCCTTTCATATTTTT-T-GG
1 GGATTATTCAAGGCA-TTTTTAGCCAAAAACATCTTGAATAATCT-CTTTCA-ATTTTTATAAG
* * * * * ** * *
8748701 GGATTATTCAAGGCATTGTTGGCCAAAAA-ATACCTTGGATAATCCCTTACAAAAAATTGATTAG
1 GGATTATTCAAGGCATTTTTAGCCAAAAACAT--CTTGAATAATCTCTTTC--AATTTTTATAAG
* * *** * * * *
8748765 GG-TTATTGAAGGCATTTTCTAGCCCAAAATGCCTTTAATAAT-TCCCTCCAATTTTTATGAGG
1 GGATTATTCAAGGCATTTT-TAGCCAAAAACATCTTGAATAATCT-CTTTCAATTTTTAT-AAG
8748827 GGATTATTCAAGGCATTTTT
1 GGATTATTCAAGGCATTTTT
8748847 TGCTTGAATA
Statistics
Matches: 157, Mismatches: 37, Indels: 29
0.70 0.17 0.13
Matches are distributed among these distances:
60 1 0.01
61 21 0.13
62 31 0.20
63 55 0.35
64 36 0.23
65 7 0.04
66 6 0.04
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (61 bp):
GGATTATTCAAGGCATTTTTAGCCAAAAACATCTTGAATAATCTCTTTCAATTTTTATAAG
Found at i:8749076 original size:104 final size:104
Alignment explanation
Indices: 8748962--8749170 Score: 418
Period size: 104 Copynumber: 2.0 Consensus size: 104
8748952 AGGCATTTTT
8748962 GTCCAAAAATGCCTTAAATAATCCCCTTCAATTTTTATAAGGGGATTATTCAGGATGTTTTTTGC
1 GTCCAAAAATGCCTTAAATAATCCCCTTCAATTTTTATAAGGGGATTATTCAGGATGTTTTTTGC
8749027 CAAAAACATCTTGAATAATCCCCTCTAATTTTTATGAAG
66 CAAAAACATCTTGAATAATCCCCTCTAATTTTTATGAAG
8749066 GTCCAAAAATGCCTTAAATAATCCCCTTCAATTTTTATAAGGGGATTATTCAGGATGTTTTTTGC
1 GTCCAAAAATGCCTTAAATAATCCCCTTCAATTTTTATAAGGGGATTATTCAGGATGTTTTTTGC
8749131 CAAAAACATCTTGAATAATCCCCTCTAATTTTTATGAAG
66 CAAAAACATCTTGAATAATCCCCTCTAATTTTTATGAAG
8749170 G
1 G
8749171 GATTATTCAA
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 105 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (104 bp):
GTCCAAAAATGCCTTAAATAATCCCCTTCAATTTTTATAAGGGGATTATTCAGGATGTTTTTTGC
CAAAAACATCTTGAATAATCCCCTCTAATTTTTATGAAG
Found at i:8749314 original size:62 final size:61
Alignment explanation
Indices: 8749082--8749383 Score: 229
Period size: 62 Copynumber: 4.9 Consensus size: 61
8749072 AAATGCCTTA
*
8749082 AATAATCCCCTTCAATTTTTATAAGGGGATTATTC-AGGATGTTTTTTGCCAAAAACATCTTG
1 AATAATCCCCTTCAATTTTTA-AAAGGGATTATTCAAGG-TGTTTTTTGCCAAAAACATCTTG
* * * * * * *
8749144 AATAATCCCC-TCTAATTTTTATGAAGGGATTATTCAAGGAGTTTTTGGCTAGAAAATACCGTG
1 AATAATCCCCTTC-AATTTTTA-AAAGGGATTATTCAAGGTGTTTTTTGCCA-AAAACATCTTG
* ** * * **
8749207 AATAAT-CTCTTACAAAAAATTGAATAGGG-TTATTCAAGGCATTTTTTGCCAAAAACA-CTTTG
1 AATAATCCCCTT-C--AATTTTTAAAAGGGATTATTCAAGGTGTTTTTTGCCAAAAACATC-TTG
* * * * *
8749269 ACTAATCCCCTTCAATTTTTTAAAAGGGATTATTTAAGGTGTTTTTAGCCAAAAATATCTTA
1 AATAATCCCCTTCAA-TTTTTAAAAGGGATTATTCAAGGTGTTTTTTGCCAAAAACATCTTG
* * * *** *
8749331 AATAATCTCATTC-CTTTTTTGGAGGGATTATTCAAGGTGTTTTTTGGCAAAAA
1 AATAATCCCCTTCAATTTTTAAAAGGGATTATTCAAGGTGTTTTTTGCCAAAAA
8749384 AATACGTTGA
Statistics
Matches: 186, Mismatches: 43, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
60 35 0.19
61 11 0.06
62 89 0.48
63 41 0.22
64 5 0.03
65 5 0.03
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (61 bp):
AATAATCCCCTTCAATTTTTAAAAGGGATTATTCAAGGTGTTTTTTGCCAAAAACATCTTG
Found at i:8749570 original size:40 final size:41
Alignment explanation
Indices: 8749495--8749610 Score: 135
Period size: 40 Copynumber: 2.8 Consensus size: 41
8749485 TAAAAGGATT
* * *
8749495 ATTGAAGGCATTTTTGAGGAAAAATACCTTAAATGATCATC
1 ATTGAAGGCATTTTTAAAGAAAAATACCTTAAATGATCAAC
* * *
8749536 ATTGAAGCCATTTTTAAAG-AAAATGCCTTAAATGATTAAC
1 ATTGAAGGCATTTTTAAAGAAAAATACCTTAAATGATCAAC
* **
8749576 ATTTAAGGCATTTTTTGAGAAGAAATACCTTAAAT
1 ATTGAAGGCATTTTTAAAGAA-AAATACCTTAAAT
8749611 AATGATGATC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
40 33 0.53
41 17 0.27
42 12 0.19
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.34
Consensus pattern (41 bp):
ATTGAAGGCATTTTTAAAGAAAAATACCTTAAATGATCAAC
Found at i:8749652 original size:45 final size:42
Alignment explanation
Indices: 8749598--8749683 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
8749588 TTTTGAGAAG
* * *
8749598 AAATACCTTAAATAATGATGATCATTTAAGGCGTTTCTTCAACCC
1 AAATACCTT--AT-ATGATCATCATCTAAGGCATTTCTTCAACCC
*
8749643 AAATGCCTTATATGATCATCATCTAAGGCATTTCTTCAACC
1 AAATACCTTATATGATCATCATCTAAGGCATTTCTTCAACC
8749684 TACAATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 27 0.73
43 2 0.05
45 8 0.22
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (42 bp):
AAATACCTTATATGATCATCATCTAAGGCATTTCTTCAACCC
Found at i:8753704 original size:3 final size:3
Alignment explanation
Indices: 8753696--8753746 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
8753686 ATAATCATAA
8753696 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8753744 ATT
1 ATT
8753747 TTCATAAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8756706 original size:20 final size:21
Alignment explanation
Indices: 8756681--8756723 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
8756671 AAAAAAAGAA
8756681 AAAAAAAGAAAACCTG-TAGC
1 AAAAAAAGAAAACCTGATAGC
* *
8756701 AAAAAAATAAAACTTGATAGC
1 AAAAAAAGAAAACCTGATAGC
8756722 AA
1 AA
8756724 CAAGCAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.63, C:0.12, G:0.12, T:0.14
Consensus pattern (21 bp):
AAAAAAAGAAAACCTGATAGC
Found at i:8759190 original size:9 final size:10
Alignment explanation
Indices: 8759161--8759192 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
8759151 TAAAAATAAA
*
8759161 TTAAAATTTT
1 TTAACATTTT
8759171 TTAACATTTT
1 TTAACATTTT
8759181 TTAACATTTT
1 TTAACATTTT
8759191 TT
1 TT
8759193 CCCTTTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTAACATTTT
Found at i:8759310 original size:48 final size:50
Alignment explanation
Indices: 8759258--8759359 Score: 172
Period size: 48 Copynumber: 2.1 Consensus size: 50
8759248 AAAATAATAG
* *
8759258 AAAAAGAGATTAAAATAATAAAATATTTAAATTGAAGA-T-AAAAACAAT
1 AAAAAGAGATTAAAACAATAAAATATTTAAATTGAAGATTGAAAAAAAAT
8759306 AAAAAGAGATTAAAACAATAAAATATTTAAATTGAAGATTGAAAAAAAAT
1 AAAAAGAGATTAAAACAATAAAATATTTAAATTGAAGATTGAAAAAAAAT
8759356 AAAA
1 AAAA
8759360 TGATTAGAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
48 37 0.74
49 1 0.02
50 12 0.24
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.24
Consensus pattern (50 bp):
AAAAAGAGATTAAAACAATAAAATATTTAAATTGAAGATTGAAAAAAAAT
Found at i:8759365 original size:48 final size:48
Alignment explanation
Indices: 8759243--8759359 Score: 171
Period size: 48 Copynumber: 2.4 Consensus size: 48
8759233 GTTATGTAGA
* * *
8759243 AAGATAAAATAATAGAAAAAGAGATTAAAATAATAAAATATTTAAATTG
1 AAGATAAAA-AAAATAAAAAGAGATTAAAACAATAAAATATTTAAATTG
*
8759292 AAGATAAAAACAATAAAAAGAGATTAAAACAATAAAATATTTAAATTG
1 AAGATAAAAAAAATAAAAAGAGATTAAAACAATAAAATATTTAAATTG
8759340 AAGATTGAAAAAAAATAAAA
1 AAGA-T-AAAAAAAATAAAA
8759360 TGATTAGAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
48 39 0.64
49 10 0.16
50 12 0.20
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.23
Consensus pattern (48 bp):
AAGATAAAAAAAATAAAAAGAGATTAAAACAATAAAATATTTAAATTG
Found at i:8760388 original size:17 final size:18
Alignment explanation
Indices: 8760366--8760399 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8760356 CAAAAGCGAT
*
8760366 AAAATAA-ATCAAAAATG
1 AAAATAACAACAAAAATG
8760383 AAAATAACAACAAAAAT
1 AAAATAACAACAAAAAT
8760400 ATTATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.15
Consensus pattern (18 bp):
AAAATAACAACAAAAATG
Found at i:8760862 original size:16 final size:16
Alignment explanation
Indices: 8760827--8760885 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
8760817 AAAGGAGATG
* *
8760827 AAAAATCATAAGTCACA
1 AAAAATCAAAAGT-AAA
8760844 AAAAATCAAAAGTAAA
1 AAAAATCAAAAGTAAA
* *
8760860 AAACAT-AAACATTAAA
1 AAAAATCAAA-AGTAAA
8760876 AAAAATCAAA
1 AAAAATCAAA
8760886 GGTTTCAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 3 0.09
16 17 0.49
17 15 0.43
ACGTcount: A:0.69, C:0.12, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAAATCAAAAGTAAA
Found at i:8762325 original size:14 final size:15
Alignment explanation
Indices: 8762279--8762317 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
8762269 GATCATGACA
*
8762279 AAAAATAAAAAATAAT
1 AAAAAT-AAAAATACT
8762295 AAAAATAAAAATACT
1 AAAAATAAAAATACT
8762310 AAAAATAA
1 AAAAATAA
8762318 TATACTAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAAATAAAAATACT
Found at i:8762818 original size:2 final size:2
Alignment explanation
Indices: 8762811--8762855 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
8762801 GTAAAAGGAG
8762811 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8762853 TA T
1 TA T
8762856 TATGGAATAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8765797 original size:34 final size:34
Alignment explanation
Indices: 8765754--8765824 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
8765744 AGCAGAAATG
* *
8765754 CAACAAATCAGATAAAAACTTTAAGGATTTGACC
1 CAACAAATCAAACAAAAACTTTAAGGATTTGACC
* *
8765788 CAACAAATCAAACAAAAAGTTTAGGGATTTGACC
1 CAACAAATCAAACAAAAACTTTAAGGATTTGACC
8765822 CAA
1 CAA
8765825 AATGCAAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.48, C:0.18, G:0.13, T:0.21
Consensus pattern (34 bp):
CAACAAATCAAACAAAAACTTTAAGGATTTGACC
Found at i:8766199 original size:60 final size:59
Alignment explanation
Indices: 8766135--8766478 Score: 180
Period size: 60 Copynumber: 5.7 Consensus size: 59
8766125 TTGAAAGAGG
* *
8766135 TTATTCAAGGCGTTTCTAGCAAAAAATACCTTGAATAATCTTGTTCCATTTTTTTTGGAA
1 TTATTCAAGGCGTTTCTAGCAAAAAATACCTTCAATAATCCT-TTCCATTTTTTTTGGAA
* * * * * * ** * *
8766195 TTATTGAAGACATTTTTGGCCAAAAATGTCTTCAATAATCTCGTTCCATTTTTTTT-TAGA
1 TTATTCAAGGCGTTTCTAGCAAAAAATACCTTCAATAATC-CTTTCCATTTTTTTTGGA-A
* * * * *
8766255 TTATTGAAGGTGTTT-TTGACCAAAAATACCTTCAATAATCCCTTTCTA-TTTTTTTGGAGA
1 TTATTCAAGGCGTTTCTAG-CAAAAAATACCTTCAATAAT-CCTTTCCATTTTTTTTGGA-A
* * * * * * * * * ** ***
8766315 TTATTCATGACATTTTTTGGCCAAAAAATGCCTT-AATGATCTCTTACAAAAAATTGAAT-GAA
1 TTATTCAAGGC-GTTTCTAG-CAAAAAATACCTTCAATAATC-CTTTC--CATTTTTTTTGGAA
* * * *
8766377 GTTATTCAAGGCGTTTCTAGCAAAAAATATCTTAAATAATCCCTTT-CATTTTTTTGGGGA
1 -TTATTCAAGGCGTTTCTAGCAAAAAATACCTTCAATAAT-CCTTTCCATTTTTTTTGGAA
*
8766437 TTATTCAAGGTGTTTTCTA-CAAAAAAATACCTTCAATAATCC
1 TTATTCAAGGCG-TTTCTAGC-AAAAAATACCTTCAATAATCC
8766479 GCTCCCTTTT
Statistics
Matches: 210, Mismatches: 57, Indels: 35
0.70 0.19 0.12
Matches are distributed among these distances:
59 27 0.13
60 116 0.55
61 24 0.11
62 27 0.13
63 13 0.06
64 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (59 bp):
TTATTCAAGGCGTTTCTAGCAAAAAATACCTTCAATAATCCTTTCCATTTTTTTTGGAA
Found at i:8766473 original size:243 final size:241
Alignment explanation
Indices: 8766035--8766502 Score: 554
Period size: 243 Copynumber: 1.9 Consensus size: 241
8766025 AGTGTGATAT
* * * *
8766035 AAAAATGCCTTCAATAATCTTCTTCAATTTTTTTTGGGATTATTCAAGACGTTTTTGGCTAGAAA
1 AAAAATACCTTCAATAATCCTCTTCAATTTTTTTTGGGATTATTCAAGACGTTTTTGGCCAAAAA
* *
8766100 ATGCTTTGAATAATCCCTTACAAAATTGAAAGAGGTTATTCAAGGCGTTTCTAGCAAAAAATACC
66 ATGCCTTGAATAATCCCTTACAAAATTGAAAGAAGTTATTCAAGGCGTTTCTAGCAAAAAATACC
* * * * * * **
8766165 TTGAATAATCTTGTTCCATTTTTTTTGGAATTATTGAAGACATTTTTGGCCAAAAATGTCTTCAA
131 TTAAATAATCCTGTTCCATTTTTTTGGGAATTATTCAAGACATTTTTGACAAAAAATACCTTCAA
* *
8766230 TAATCTCGTTCCATTTTT-TTTTAGATTATTGAAGGTGTTTTTGACC
196 TAATC-CGCTCCATTTTTATTTAAGATTATTGAAGGTGTTTTTGACC
* * *
8766276 AAAAATACCTTCAATAATCC-CTTTCTA-TTTTTTTGGAGATTATTCATGACATTTTTTGGCCAA
1 AAAAATACCTTCAATAATCCTC-TTCAATTTTTTTTGG-GATTATTCAAGAC-GTTTTTGGCCAA
* * *
8766339 AAAATGCCTT-AATGATCTCTTACAAAAAATTGAATGAAGTTATTCAAGGCGTTTCTAGCAAAAA
63 AAAATGCCTTGAATAATCCCTTAC--AAAATTGAAAGAAGTTATTCAAGGCGTTTCTAGCAAAAA
* * ***
8766403 ATATCTTAAATAATCCCT-TT-CATTTTTTTGGGGATTATTCAAGGTGTTTTCT-ACAAAAAAAT
126 ATACCTTAAATAAT-CCTGTTCCATTTTTTTGGGAATTATTCAAGACATTTT-TGAC-AAAAAAT
*
8766465 ACCTTCAATAATCCGCTCCCTTTTTATTTAAGATTATT
188 ACCTTCAATAATCCGCTCCATTTTTATTTAAGATTATT
8766503 CAAGCCATTT
Statistics
Matches: 190, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
240 10 0.05
241 45 0.24
242 53 0.28
243 80 0.42
244 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (241 bp):
AAAAATACCTTCAATAATCCTCTTCAATTTTTTTTGGGATTATTCAAGACGTTTTTGGCCAAAAA
ATGCCTTGAATAATCCCTTACAAAATTGAAAGAAGTTATTCAAGGCGTTTCTAGCAAAAAATACC
TTAAATAATCCTGTTCCATTTTTTTGGGAATTATTCAAGACATTTTTGACAAAAAATACCTTCAA
TAATCCGCTCCATTTTTATTTAAGATTATTGAAGGTGTTTTTGACC
Found at i:8766501 original size:183 final size:183
Alignment explanation
Indices: 8766216--8766652 Score: 444
Period size: 183 Copynumber: 2.4 Consensus size: 183
8766206 ATTTTTGGCC
* * * * * *
8766216 AAAAATGTCTTCAATAATCTCGTTCCATTTTTTTTTA-GATTATTGAAGGTGTTTTTGACCAAAA
1 AAAAATATCTTAAATAATCTCCTTTCA-TTTTTTTTAGGATTATTCAAGGTGTTTTTGACAAAAA
** * * *
8766280 ATACCTTCAATAATCCCTTTCTATTTTTTTGGAGATTATTCATGACATTTTTTGGC-CAAAAAAT
65 ATACCTTCAATAATCCCTCCCTATTTTTTTGAAGATTATTCAAGACATTTTTT--CTCAAAAAAC
* * *
8766344 GCCTT-AATGA-TCTCTTACAAAAAATTGAATGAAGTTATTCAAGGCGTTTCTAGCA
128 GCCTTGAAT-ATTCTCTTACAAAAAATTAAATGAAGTTACTCAAGGCATTTCTAGCA
**
8766399 AAAAATATCTTAAATAATC-CCTTTCATTTTTTTGGGGATTATTCAAGGTGTTTTCT-ACAAAAA
1 AAAAATATCTTAAATAATCTCCTTTCATTTTTTTTAGGATTATTCAAGGTGTTTT-TGAC-AAAA
* * *
8766462 AATACCTTCAATAATCCGCTCCCT-TTTTATTT-AAGATTATTCAAGCCATTTTTTCTTAGAAAA
64 AATACCTTCAATAATCC-CTCCCTATTTT-TTTGAAGATTATTCAAGACATTTTTTCTCAAAAAA
** * * *
8766525 CGCCTTGAATATTCTCTTACAAAAAATTAAATGGGGTTACTCAAGGTATTTCTGGCC
127 CGCCTTGAATATTCTCTTACAAAAAATTAAATGAAGTTACTCAAGGCATTTCTAGCA
* * * * *
8766582 AAAAACA-CATTGAATAATCTCC-TTCAATTTTTTTTAGGATTATTTAAGGTGTTTTTGGCTAAA
1 AAAAATATC-TTAAATAATCTCCTTTC-ATTTTTTTTAGGATTATTCAAGGTGTTTTTGACAAAA
*
8766645 AATGCCTT
64 AATACCTT
8766653 TAGTAATAAA
Statistics
Matches: 210, Mismatches: 32, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
181 8 0.04
182 36 0.17
183 130 0.62
184 36 0.17
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (183 bp):
AAAAATATCTTAAATAATCTCCTTTCATTTTTTTTAGGATTATTCAAGGTGTTTTTGACAAAAAA
TACCTTCAATAATCCCTCCCTATTTTTTTGAAGATTATTCAAGACATTTTTTCTCAAAAAACGCC
TTGAATATTCTCTTACAAAAAATTAAATGAAGTTACTCAAGGCATTTCTAGCA
Found at i:8766679 original size:20 final size:20
Alignment explanation
Indices: 8766642--8766679 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8766632 GTTTTTGGCT
* *
8766642 AAAAATGCCTTTAGTAATAA
1 AAAAATGCCTTGAATAATAA
8766662 AAAAATGCCTTGAATAAT
1 AAAAATGCCTTGAATAAT
8766680 CTCTAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.29
Consensus pattern (20 bp):
AAAAATGCCTTGAATAATAA
Found at i:8768197 original size:1 final size:1
Alignment explanation
Indices: 8768191--8768217 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
8768181 TTTGCACAAC
8768191 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
8768218 GAGAGAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8771537 original size:58 final size:58
Alignment explanation
Indices: 8771468--8771579 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 58
8771458 AAAAGTTAAA
*
8771468 AAGTAAAGAAGGATTATATCCCTCAC-TTTACATTTTTTTTTTCCAAGCCATACACACC
1 AAGTAAAGAAGGATTAAATCCCTCACTTTTAC-TTTTTTTTTTCCAAGCCATACACACC
*
8771526 AAGTAAAGAAGGATTAAATCCCTCACTTTTACTTTTTTTTTTCCTAGCCATACA
1 AAGTAAAGAAGGATTAAATCCCTCACTTTTACTTTTTTTTTTCCAAGCCATACA
8771580 AGCGTGAATG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
58 46 0.90
59 5 0.10
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (58 bp):
AAGTAAAGAAGGATTAAATCCCTCACTTTTACTTTTTTTTTTCCAAGCCATACACACC
Found at i:8780954 original size:821 final size:820
Alignment explanation
Indices: 8779314--8781303 Score: 1926
Period size: 821 Copynumber: 2.4 Consensus size: 820
8779304 GGCTTGGTTG
* * * ** ** * *
8779314 TGTTGGGAATAGTGACTCAAAACCCTTAAGAGATTTGTTTGGGATTGGCTAAATATTACTTGA-A
1 TGTTAGGAATAATGACTCAAAACCCATAAGAGATTTGTTTGAAATTAACTACACATTACTTGATA
* * * * * * * * *
8779378 GGATAACAAGGCTTGCAAAATAAGAATTATAAGAGGAAAGGGATTCCTGATAGACAAGTTTATAT
66 -GATAAGAAGACTTACAAAAAAAGAATTCTAAGAAGAAAGAGATTCTTGATAGGCAAG-TT-TA-
* * * * *
8779443 GCTTATAAATAGCTTATAAATAGGTGAAGTCTCTATAAGTTTAAGTATGAGAAAAATATGTACAA
127 -C------ATA-CTTATAAATAGGTGAAGTCTCTAT-AG---AATTA-GGGAAAAAAATATAAAA
* * * ** ** * *
8779508 AAGTTGTAAGTTTTTATGGGATAGACA-TATCATAGGAGTGTTGGGGATTTACATCTTATGGGTG
179 AAGTTGTAAGATTTTATGGAATAGACACT-CCATAAAAGTACTGGGGATTTACGTCTTATGGGTA
* * * * *
8779572 TGAGTATGTTTGAATGTTAAGTGAGCTAGAGGAGAACAAAATGGTTCACATAGGTATGATGCATA
243 T-TG-ATGTTTGAATATTAAGTGA-CTAGAGGAGAACAAGATGGTTCACATAGATATGATGCATG
* * ** *** *
8779637 GGAGCATATAGGTATATATTTATTTGTGTTGAAAGGGTGTACATGTGTATGTGTTTGTTTGGGTT
305 GGTGCATATAGGTATATATTTATTTGTGATGAAAGGGTACACACAAGTATGCGTTTGTTTGGGTT
* * * *
8779702 GAGAATACTCCATAGAACTAGAAGGAATTGAGAGGATCTATGGGTATTGATTATTAGTGTTTGAT
370 GAGAATACTCCATAGAACTAGAAGGAATTGAGAGGATCTATGAGTATTGATTATGAATATTTGAT
* * * * * * * ** *
8779767 TTAATTGTATGTTTGTAATTTTTTATAATTAGTGGATCTTGTTTCTCATCCGTGGGCGTAAGTTA
435 TTAATTCTATATTTGTAATTATCTACAACTACTGGATCTTGTTTCTCATCCGTGAACGTAAGTGA
* * *
8779832 GTTGGGCCAAACCACATTAAATTGTTATCTTTTATGTGACTGATTAATTGCTTAATTATGCTTTC
500 GTTAGGCCAAACCACATTAAATTGTTATCTCTTATGTGACTGATTAATTACTTAATTATGCTTTC
* * * * * * *
8779897 GCGAGCTTGATTGATTGGAGGCTTTTTGCTTAACAGTAGTATCAAAGCTAAAGGTTTGAGATATG
565 GCGAGCTTAATTGATTGGAGGCTTTTTGCCTAACAATAGTATCAAACCTAAAGGTTTAAAATATA
* * * * *
8779962 GGAAGAGGTAACCTTAGAGGAACTCGATTCAAGTGAAGAGTTCGAGTTCGTGCTTTAAGAATTGA
630 AGAAGAGATAACCTTAGAGGAACTCGATTCAAGAGAAGAGTTCAAGTTCGTGATTTAAGAATTGA
* * * * * * * *
8780027 GGATTGATTTGCGTGAAGCATGAAGACATAAGAGAAGATAATTGTGAGAGTTCTATTGCAGATGG
695 AGATTGATTTGCATGAAGCATAAAAACACAAGAGAAGATAATTGTGAGACTTCCATTGAAGATGG
* ** * * * *
8780092 AAAGCCAAGCATGTTTAGTATGAAAACAAATGATTTGATGGAATTTGAGTTAAGGTAGAGAT
760 -AAGCCAAGCATGTCTAACATGAAAACAAATGATTTGATGGAATTGGAATCAAAGTAGAGAT
* *
8780154 TGTT-GGAA-ACA-GTACCTCAAAACCTATAAGAGATTTGTTTGAAATTAACTAGACATTACTTG
1 TGTTAGGAATA-ATG-A-CTCAAAACCCATAAGAGATTTGTTTGAAATTAACTACACATTACTTG
* * * ** * *
8780216 ATGGATAAGAATACTTGCAAAAGTATAATTTTAA-AAGGAAATG-GATTCTTGATAGGCAAGTTT
63 ATAGATAAGAAGACTTACAAAAAAAGAATTCTAAGAA-GAAA-GAGATTCTTGATAGGCAAGTTT
* * * *
8780279 GCATGCTTATAAATAGGTGAA-TCCTCTATA-AGGTTAGGTATAAGAAAA-A-AAATAAGAGTTG
126 ACATACTTATAAATAGGTGAAGT-CTCTATAGA-ATTAGGGA-AA-AAAATATAAA-AA-AGTTG
* *
8780340 T-AGAATTTTTTTGG-ATAGACAC-CCTGTAAAAGTACTGGGGATTTACGTCTTATGGGTATTGA
185 TAAG-A-TTTTATGGAATAGACACTCC-ATAAAAGTACTGGGGATTTACGTCTTATGGGTATTGA
*
8780402 TGTTTAAATATTAAGTGCACTAGAGGAGAACAAGATGGTTCACAT-GATATGATGCATGGGTGCA
247 TGTTTGAATATTAAGTG-ACTAGAGGAGAACAAGATGGTTCACATAGATATGATGCATGGGTGCA
* * * * * *
8780466 TATCGGTATGTGTTTGTTTGTGATGGAAGGGTACACACAAGTATGCGTTTGTTTGGGTTGAGAGT
311 TATAGGTATATATTTATTTGTGATGAAAGGGTACACACAAGTATGCGTTTGTTTGGGTTGAGAAT
* * * *
8780531 ACTCCATA-AGACTAGAA-GAGATTGAGAATG-TTTATGAGTATTGGTTATGAATATTTGATTTG
376 ACTCCATAGA-ACTAGAAGGA-ATTGAG-AGGATCTATGAGTATTGATTATGAATATTTGATTTA
* * * *
8780593 ATTCTATATTTGTAATTATCTACAACTACTGGATCTTGTTTCTCATTCGTGAATGTAGGTGCGTT
438 ATTCTATATTTGTAATTATCTACAACTACTGGATCTTGTTTCTCATCCGTGAACGTAAGTGAGTT
** ** * * * * * *
8780658 AGGCTGAACCATGTTAAA-T-TTGTCTCTTCTGTGATTGATTAATTATTTGATTATGTTTTCGCT
503 AGGCCAAACCACATTAAATTGTTATCTCTTATGTGACTGATTAATTACTTAATTATGCTTTCGC-
*
8780721 G-GCTTAATTGATTGGAGGCTTTTTGCCTAACAATGGTATCAAACCTAAAGGTTTAAAATATAAG
567 GAGCTTAATTGATTGGAGGCTTTTTGCCTAACAATAGTATCAAACCTAAAGGTTTAAAATATAAG
* * * * *
8780785 AAGAGATAAGCTTATAGGAGCTCGATTCAAGAGAAGAGTTTAAGTTCGTGATTTGAGAATTGAAG
632 AAGAGATAACCTTAGAGGAACTCGATTCAAGAGAAGAGTTCAAGTTCGTGATTTAAGAATTGAAG
* * * *
8780850 ATTGATTTGCATGAAGTATAAAAACAAACAAGAGAAGATGATTGTGTGACTTCCATTGAAGGTGG
697 ATTGATTTGCATGAAGCATAAAAAC--ACAAGAGAAGATAATTGTGAGACTTCCATTGAAGATGG
* * * * *
8780915 -AGTCAAGTATGTCTAACATGAAGACAAATGATTTGATGGAATTGGAATCAAAGTGGAGGT
760 AAGCCAAGCATGTCTAACATGAAAACAAATGATTTGATGGAATTGGAATCAAAGTAGAGAT
* * * ** *
8780975 TTTTAGGAATAATGACTCAAAACCCATGAGAGATTTGTTTGGAATTGGCTACATATTACTTGATA
1 TGTTAGGAATAATGACTCAAAACCCATAAGAGATTTGTTTGAAATTAACTACACATTACTTGATA
* *
8781040 GATAAGAAGACTTACAAAAAAAGAATTCTAAGAAGAAAGAGATTCTTGATAGGTAAGTTTATATA
66 GATAAGAAGACTTACAAAAAAAGAATTCTAAGAAGAAAGAGATTCTTGATAGGCAAGTTTACATA
8781105 CTTATAAATAGGTGAAGTCTCTATAGAATTAGGGAAAAAAATATAAAAAAGTTGTAAGATTTTAT
131 CTTATAAATAGGTGAAGTCTCTATAGAATTAGGGAAAAAAATATAAAAAAGTTGTAAGATTTTAT
** *
8781170 GGAATAGACACTCCATAGGAGTACT-GGAATTTACGTCTTATAGGTGTA-T-ATGTTTGAATATT
196 GGAATAGACACTCCATAAAAGTACTGGGGATTTACGTCTTAT-GG-GTATTGATGTTTGAATATT
* ** * *
8781232 AAGTGGACTAGATGAGAATGAGATGGTTCACATAGATATGATGCATGAGTGCACAT-GGATATAT
259 AAGT-GACTAGAGGAGAACAAGATGGTTCACATAGATATGATGCATGGGTGCATATAGG-TATAT
*
8781296 GTTTATTT
322 ATTTATTT
8781304 AAGTTGAAAA
Statistics
Matches: 940, Mismatches: 170, Indels: 101
0.78 0.14 0.08
Matches are distributed among these distances:
818 64 0.07
819 62 0.07
820 13 0.01
821 340 0.36
822 15 0.02
823 211 0.22
824 48 0.05
825 11 0.01
826 43 0.05
827 7 0.01
828 2 0.00
829 22 0.02
830 2 0.00
836 1 0.00
838 3 0.00
839 8 0.01
840 87 0.09
841 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (820 bp):
TGTTAGGAATAATGACTCAAAACCCATAAGAGATTTGTTTGAAATTAACTACACATTACTTGATA
GATAAGAAGACTTACAAAAAAAGAATTCTAAGAAGAAAGAGATTCTTGATAGGCAAGTTTACATA
CTTATAAATAGGTGAAGTCTCTATAGAATTAGGGAAAAAAATATAAAAAAGTTGTAAGATTTTAT
GGAATAGACACTCCATAAAAGTACTGGGGATTTACGTCTTATGGGTATTGATGTTTGAATATTAA
GTGACTAGAGGAGAACAAGATGGTTCACATAGATATGATGCATGGGTGCATATAGGTATATATTT
ATTTGTGATGAAAGGGTACACACAAGTATGCGTTTGTTTGGGTTGAGAATACTCCATAGAACTAG
AAGGAATTGAGAGGATCTATGAGTATTGATTATGAATATTTGATTTAATTCTATATTTGTAATTA
TCTACAACTACTGGATCTTGTTTCTCATCCGTGAACGTAAGTGAGTTAGGCCAAACCACATTAAA
TTGTTATCTCTTATGTGACTGATTAATTACTTAATTATGCTTTCGCGAGCTTAATTGATTGGAGG
CTTTTTGCCTAACAATAGTATCAAACCTAAAGGTTTAAAATATAAGAAGAGATAACCTTAGAGGA
ACTCGATTCAAGAGAAGAGTTCAAGTTCGTGATTTAAGAATTGAAGATTGATTTGCATGAAGCAT
AAAAACACAAGAGAAGATAATTGTGAGACTTCCATTGAAGATGGAAGCCAAGCATGTCTAACATG
AAAACAAATGATTTGATGGAATTGGAATCAAAGTAGAGAT
Found at i:8782787 original size:103 final size:103
Alignment explanation
Indices: 8782608--8782816 Score: 382
Period size: 103 Copynumber: 2.0 Consensus size: 103
8782598 ACCATCAAGC
8782608 CAATACTGGATTCTCACTTTTCAACTGAAATTTCAGTTTGTGATCTTAGACTTACATTAAAACTT
1 CAATACTGGATTCTCACTTTTCAACTGAAATTTCAGTTTGTGATCTTAGACTTACATTAAAACTT
*
8782673 CAGTTTTAGCAAATCTAATTCCAATCCTTAATATTAGG
66 CAGTTTTAGCAAATCTAATTACAATCCTTAATATTAGG
* *
8782711 CAATACTGGATTCTCACTTTTCAACTGAAATTTCAGTTTGTGATCTTCGACTTCCATTAAAACTT
1 CAATACTGGATTCTCACTTTTCAACTGAAATTTCAGTTTGTGATCTTAGACTTACATTAAAACTT
*
8782776 CAGTTTTAGCAAATCTAATTACAATCCTTCATATTAGG
66 CAGTTTTAGCAAATCTAATTACAATCCTTAATATTAGG
8782814 CAA
1 CAA
8782817 CATTTTTTAG
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 102 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (103 bp):
CAATACTGGATTCTCACTTTTCAACTGAAATTTCAGTTTGTGATCTTAGACTTACATTAAAACTT
CAGTTTTAGCAAATCTAATTACAATCCTTAATATTAGG
Found at i:8789052 original size:21 final size:21
Alignment explanation
Indices: 8789028--8789068 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8789018 TGAGATTTAC
8789028 ATGTGAACACAATAATTTGTA
1 ATGTGAACACAATAATTTGTA
* *
8789049 ATGTGAACGCAATTATTTGT
1 ATGTGAACACAATAATTTGT
8789069 CCATTTACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (21 bp):
ATGTGAACACAATAATTTGTA
Found at i:8789922 original size:22 final size:22
Alignment explanation
Indices: 8789894--8789939 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
8789884 TAATAAGAAG
8789894 AACTATACTTAAGATTAGTACC
1 AACTATACTTAAGATTAGTACC
8789916 AACTATACTTAAGATTAGTACC
1 AACTATACTTAAGATTAGTACC
8789938 AA
1 AA
8789940 GCTTTCTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.30
Consensus pattern (22 bp):
AACTATACTTAAGATTAGTACC
Found at i:8795503 original size:315 final size:317
Alignment explanation
Indices: 8794688--8797388 Score: 1202
Period size: 316 Copynumber: 8.6 Consensus size: 317
8794678 ATGAATTGAT
* * * * *
8794688 GAAATGCTTTT-TTTGTTAAGAAAAGCAACAATATCA-TGTATCACAATGCTAACAAACTATTTT
1 GAAATGCTTTTATTGGTAAACAAAAGCAACAATAT-AGTGTATCCCAATGGTAACAAACTATTTT
** * * * * ** *
8794751 GCTTGGTACTTTGTGAAAGGAACTTAAACTTTTATGATGAAAAAAGTTTGAAGAAGTTGAAGGAC
65 GCTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAACAAGTTGAAGGAC
* * * *
8794816 CAACTTTGAAACCAAACAAAAT-GATTAGGAGAAATGTTTTTTTTTTTGGTAAACAAAA-CAACA
130 CAACTTTGAAACCAAACAAAATAAATGA-GAGAAATG---CTTTTTTAGG-AAACAAAAGCAACA
* * * * * * *
8794879 ATATCA-ATATCCCAATTG-TAACATACAATTTTGCTTGGTACATTATGAAAAGAAC-T-T--TT
190 ATATCATGTATCCCAA-AGATAACAAACTATTTTGCTTCGTACTTTGTGAAAAGAACTTATACTT
* * * * * * * ** * * **
8794938 ATA--ATTAAAGATGTTTGAAT-GAGTTGAAGGACTAACTTTGAAACCAAATGAAGTGATTGGGA
254 TTACGATGAAAGAAGTTTG-ATCAAGTAGAAAGACCAACTTTGAAACCAAACAAAATAAAAGGGA
* * * * *
8795000 GAAATGCTTTTTTTTTTTTTTGTAAAC-AAA--AATAATATTGTGTATCCTAATGGTAACAAACT
1 GAAATGC------TTTTATTGGTAAACAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACT
* * * * *
8795062 ATTTTACTTGGTACTTTGTGAAAAGAATTTATACTATTACA-ATGGTGGAAGTTTAAACAAGTTG
60 ATTTTGCTTGGTACTTTGTGAAAATAATTTATACTTTTA-AGATGGAGGAAGTTTGAACAAGTTG
* * * * * * * *
8795126 AAGGTCCAACTTTGAAACCAAATAAAATGAATGGGAGAAATACATTTTTAGGAGAGAAAAGCAAC
124 AAGGACCAACTTTGAAACCAAACAAAATAAATGAGAGAAATGCTTTTTTAGGAAACAAAAGCAAC
* * * *
8795191 AATATCATGTATCCCAAAGATAACAAATTATTTTGCTTGGTATTTTGTGAAGAA-AACTTCTACT
189 AATATCATGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTTGTGAA-AAGAACTTATACT
* * *
8795255 TTTATGAT-TAAGAAAGTTTGAAT-AAGTAGAAAGAGC-ACTTTGAAACCAAACAAAATAAAAGG
253 TTTACGATGAAAG-AAGTTTG-ATCAAGTAGAAAGACCAACTTTGAAACCAAACAAAATAAAAGG
8795317 GA
316 GA
* * *
8795319 GAAATGCTTTGT-TTGGTAAAGAAAATCAACAA-ATCGTGTATCCCAATGGTAACAAACTATTTT
1 GAAATGCTTT-TATTGGTAAACAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTT
* ** * * *
8795382 GCTTGGTATTTTGTG-AAATAACATATACTTTTAAGATGGAAGAAGTTTGAACGAGTTGAAAGAC
65 GCTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAACAAGTTGAAGGAC
** * * * * *
8795446 CAGTTTTGAAACCAAACAAAATAAATGAGAGAATTGGTTTTTTCAGTACATAAAAGCAACAATAT
130 CAACTTTGAAACCAAACAAAATAAATGAGAGAAATGCTTTTTT-AGGAAACAAAAGCAACAATAT
*
8795511 -AGTGTATCCCAAAGGTAACAAACTATTTTGCTTCGTACTTTGTGAAAAGAACTTATACTTTTAC
194 CA-TGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTTGTGAAAAGAACTTATACTTTTAC
* * * * * **
8795575 GATGAAAGAAGTTTGATCGAGTTGAAAGACCAATTTTGACACCAAACAAAATGAGGGGGA
258 GATGAAAGAAGTTTGATCAAGTAGAAAGACCAACTTTGAAACCAAACAAAATAAAAGGGA
* * * * *
8795635 GAAATGCTTTTATTGGTAAACTAAAGCAATAATATAGTGTATTCCAAAGATAACAAACTATTTTG
1 GAAATGCTTTTATTGGTAAACAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTG
* * * *
8795700 CTTCGTACTTTGTGAAAATAATTTATACTTTTACGATGGAGGAATTTTGAATAAGTTGAAGGACC
66 CTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAACAAGTTGAAGGACC
* * *
8795765 AACTTTGAAACTAAACAAAATGAAAGGA-AGAAATGTTTTTTTTATGGAAACAAAAGCAACAATA
131 AACTTTGAAACCAAACAAAAT-AAATGAGAGAAATG-CTTTTTTA-GGAAACAAAAGCAACAATA
* * * ** * ** * * * * * * * *** *
8795829 TCTTGTAT-CTAATGGGAACTATGTATTTTCCTTGGT-TTTTCATGTAAAGAGCATAGGGTTCTA
193 TCATGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTT-GTGAAAAGAACTTATACTTTTA
* * * * * * * * * *
8795892 CGATGGAGGGAGTTTGAAT-TAGTTA-AAGGACAAACTCTGAAACCAAATAAAATCAATA-GAA
257 CGATGAAAGAAGTTTG-ATCAAG-TAGAAAGACCAACTTTGAAACCAAACAAAAT-AAAAGGGA
* * * * *
8795953 GAAATGCTTTTTTTGGTAAAAAAAAAGAAGCAACAATATAGTATATCCCAAAGGTAACAAACAAT
1 GAAATGCTTTTATTGGT---AAACAA-AAGCAACAATATAGTGTATCCCAATGGTAACAAACTAT
* * * ** * * ***
8796018 TTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTCATTATGGTGAAAGCGCGAACAAGTTGAAG
62 TTTGCTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAACAAGTTGAAG
*** * * **
8796083 GACTGGCTTT-TAACCTAAACAAAATGAAAGGA-AGAAAT--TTTTTT----------A-TTACA
127 GACCAACTTTGAAACC-AAACAAAAT-AAATGAGAGAAATGCTTTTTTAGGAAACAAAAGCAACA
* *** * ** * * * * * *
8796133 ATATCTTGTATATGAATGGGAACTATCTATTTTGCTTCGT-TTTTCTTGTAAAGAACATTGA-GC
190 ATATCATGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTT-GTGAAAAGAAC-TT-ATAC
* * * * * * * *
8796196 --TT--GATGATAGATGATTTTGAACAAGTTGAAACACCAAATTTGAAACCAAACAAAATGAATG
252 TTTTACGATGAAAGA--AGTTTGATCAAGTAGAAAGACCAACTTTGAAACCAAACAAAATAAAAG
8796257 GGA
315 GGA
* * * * * * *
8796260 GCAATGGTTTTTTTGGTACACAAAGGAAACAATATAGTGTATCCCAATGGTAACAAACTATTTTA
1 GAAATGCTTTTATTGGTAAACAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTG
* * * * * *
8796325 CTTGGTACTTTGTCAAAAGAATTTCTACTTTTATGATGGAGGAAGTTTTAACAAGTT-AATGAAC
66 CTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAACAAGTTGAA-GGAC
* * * * * *
8796389 CAACTTTCAAACCAAACAAAATGGAA-GGGAGAAAGGCCTTTTTAGGTAAACAAATGCAACAATA
130 CAACTTTGAAACCAAACAAAAT-AAATGAGAGAAATGCTTTTTTAGG-AAACAAAAGCAACAATA
** * * ** * * * * * ** * *
8796453 TGTTGTATCCCTATGGGAGCTACCTA-TTTACTTAGTACTTTACGATAAGAACTTATACTTTTAT
193 TCATGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTTGTGAAAAGAACTTATACTTTTAC
** * ** * * *
8796517 GATGGGTA-AAGTTTGAAT-AAGTTGAAAGGTCAACTTTGAAACCAAATAAAATGAAAGGAA
258 GAT-GAAAGAAGTTTG-ATCAAGTAGAAAGACCAACTTTGAAACCAAACAAAATAAAAGGGA
** * * * * * *
8796577 GAAATATTTTTATTGGTAAACGAAAGCAACAATA-ACTTGTATCCCAATAGAAACTATCTATTTT
1 GAAATGCTTTTATTGGTAAACAAAAGCAACAATATA-GTGTATCCCAATGGTAACAAACTATTTT
* * ** * * ** * * * * * * * *
8796641 GCTTGGTTCCTCATGTAAAGAACGTAAATTTTTATGATAGAGTAAATTTTACCGAA--TGAAAGG
65 GCTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAAC-AAGTTG-AAGG
* * * * * * * *
8796704 ACCAAATTTGAAACCAAACAAAATGAAA-GGGAGAACTACTTTTTTTGGTAAGCGAAAGCAACAC
128 ACCAACTTTGAAACCAAACAAAAT-AAATGAGAGAAATGCTTTTTTAGG-AAACAAAAGCAACAA
* * * * * * * *
8796768 TAT-GTGTATCCCAATGGTAGC-AACTATTTTTCTTGGTATTTTGTGAAAAGAACTCATACTTTT
191 TATCATGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTTGTGAAAAGAACTTATACTTTT
** * * * ** * ** *
8796831 GTGATGGAGGAAGTTTGAGT-GAGTTA-ATGGACCAACTTTGAGACCAAACAAAATAAATTGAA
256 ACGATGAAAGAAGTTTGA-TCAAG-TAGAAAGACCAACTTTGAAACCAAACAAAATAAAAGGGA
* * * ** * * *
8796893 GAATTGGCTTTT-TCAT-G-ACACAAAAGCAACATTATACCGTATCTCAAAGATAACAAACTA--
1 GAAAT-GCTTTTAT--TGGTAAACAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATT
* * * * *
8796953 -----T--T--TTT-TGAAAAGAACTTATACTTTTACGATGGAGGAAGTTTAAATC-AGTTTAAG
63 TTGCTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAA-CAAGTTGAAG
* * *
8797007 GACCAACTTTGAAACTAAACAACATGAAA-GGGAGAAATGCATTTTTT-GGTAAACAAAAGCAAC
127 GACCAACTTTGAAACCAAACAAAAT-AAATGAGAGAAATGC-TTTTTTAGG-AAACAAAAGCAAC
* * ** ** * *
8797070 AATAACTTGTATCCC--A-AT-A-GGA-TATTTT--TTTTTATTTTGTGACAAGAACTTATACTT
189 AATATCATGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTTGTGAAAAGAACTTATACTT
* * * * * * * * *
8797127 TTATGATGTAGGAAGTTTGAAT-GATTTGAAAGACCAACTTTGAAACCATACAAAATGAAACGGA
254 TTACGATGAAAGAAGTTTG-ATCAAGTAGAAAGACCAACTTTGAAACCAAACAAAATAAAAGGGA
* * * ** * * *
8797191 GAAATGTTTTTTTTTAATGTAAACAAAAGCAACAATATCTTGTATCCCAATGGAAAC-TATTCAT
1 GAAATG-CTTTTATT--GGTAAACAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACT-AT
* * * * * ** * * * * *
8797255 TTTGCTTAGTTCTTTATGTAAAGAACATAGA-GTTTATGATGGAGGAAGTTTGAATGAA-TTAAA
62 TTTGCTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAA-CAAGTTGAA
* * * * * * *
8797318 GGACAAACCTTGAAACAAAAGAAAATGAATG-GTAGAAATGCTTTTTTTGGTAGAAAAAAAAGCA
126 GGACCAACTTTGAAACCAAACAAAATAAATGAG-AGAAATGC-TTTTTTAG--GAAACAAAAGCA
8797382 ACAATAT
187 ACAATAT
8797389 TGTACTTTGT
Statistics
Matches: 1838, Mismatches: 425, Indels: 250
0.73 0.17 0.10
Matches are distributed among these distances:
297 3 0.00
298 81 0.04
299 2 0.00
300 9 0.00
301 30 0.02
302 4 0.00
303 107 0.06
304 92 0.05
305 27 0.01
306 3 0.00
307 62 0.03
308 39 0.02
309 3 0.00
310 2 0.00
311 3 0.00
312 77 0.04
313 44 0.02
314 133 0.07
315 148 0.08
316 303 0.16
317 264 0.14
318 173 0.09
319 86 0.05
320 22 0.01
321 7 0.00
322 114 0.06
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (317 bp):
GAAATGCTTTTATTGGTAAACAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTG
CTTGGTACTTTGTGAAAATAATTTATACTTTTAAGATGGAGGAAGTTTGAACAAGTTGAAGGACC
AACTTTGAAACCAAACAAAATAAATGAGAGAAATGCTTTTTTAGGAAACAAAAGCAACAATATCA
TGTATCCCAAAGATAACAAACTATTTTGCTTCGTACTTTGTGAAAAGAACTTATACTTTTACGAT
GAAAGAAGTTTGATCAAGTAGAAAGACCAACTTTGAAACCAAACAAAATAAAAGGGA
Found at i:8795612 original size:159 final size:159
Alignment explanation
Indices: 8794472--8797388 Score: 1398
Period size: 159 Copynumber: 18.6 Consensus size: 159
8794462 ACTACTTTGG
** *
8794472 CGATGGAAGAAGTTTGAATGAGTTGAAAGATTAACTTTGAAACCAAACAAATATAAA-GGGAGAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAA-ATAAATGAGAGAA
** * ** * ** * * *
8794536 ATGCACATTTTTGATAAA-AAAAAAAATAATATCTTGCATCCCAATGGTAACCATCTATTTTGCT
65 ATGC-TTTTTTTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGCT
* * * * ** * *
8794600 TAGT-TTTTCATGTAAAA-AACATGGAGTATTA
129 TGGTACTTT-GTG-AAAAGAACTTATACTTTTA
* ** * * * * * * *
8794631 CAATGGGGGATGCTTGAACGAGTTGAAATACCAACTTTG-AA--AAA-GAAATGAATTGA-TGAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAAT-AAATGAGAGAA
* * * *
8794691 ATGCTTTTTTT-GTTAAGAAAAGCAACAATATCA-TGTATCACAATGCTAACAAACTATTTTGCT
65 ATGCTTTTTTTGGTAAATAAAAGCAACAATAT-AGTGTATCCCAATGGTAACAAACTATTTTGCT
* *
8794754 TGGTACTTTGTGAAAGGAACTTAAACTTTTA
129 TGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * * * *
8794785 TGATGAAAAAAGTTTGAA-GAAGTTGAAGGACCAACTTTGAAACCAAACAAAAT-GATTAGGAGA
1 CGATGGAAGAAGTTTGAATG-AGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGA-GAGA
* * * * * *
8794848 AATGTTTTTTTTTTTGGTAAACAAAA-CAACAATATCA--ATATCCCAATTGTAACATACAATTT
64 AATG---CTTTTTTTGGTAAATAAAAGCAACAATAT-AGTGTATCCCAATGGTAACAAACTATTT
* * *
8794910 TGCTTGGTACATTATGAAAAGAAC-T-T--TTATA
125 TGCTTGGTACTTTGTGAAAAGAACTTATACTTTTA
** * * * ** * * * *
8794941 --ATTAAAGATGTTTGAATGAGTTGAAGGACTAACTTTGAAACCAAATGAAGTGATTGGGAGAAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGAGAGAAA
** *** * * * *
8795004 TGCTTTTTTTTTTTTTTGTAAA-CAAAAATAATATTGTGTATCCTAATGGTAACAAACTATTTTA
66 TGCTTTTTTTGGTAAAT-AAAAGCAACAAT-ATA--GTGTATCCCAATGGTAACAAACTATTTTG
* *
8795068 CTTGGTACTTTGTGAAAAGAATTTATACTATTA
127 CTTGGTACTTTGTGAAAAGAACTTATACTTTTA
* ** * ** * * * * *
8795101 CAATGGTGGAAGTTTAAACAAGTTGAAGGTCCAACTTTGAAACCAAATAAAATGAATGGGAGAAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGAGAGAAA
* * * * * * * *
8795166 TACATTTTTAGG-AGAGAAAAGCAACAATATCA-TGTATCCCAAAGATAACAAATTATTTTGCTT
66 TGCTTTTTTTGGTAAATAAAAGCAACAATAT-AGTGTATCCCAATGGTAACAAACTATTTTGCTT
* *
8795229 GGTATTTTGTGAAGAA-AACTTCTACTTTTA
130 GGTACTTTGTGAA-AAGAACTTATACTTTTA
* * * * * * *
8795259 TGAT-TAAGAAAGTTTGAATAAGTAGAAAGAGC-ACTTTGAAACCAAACAAAATAAAAGGGAGAA
1 CGATGGAAG-AAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGAGAGAA
* * * *
8795322 ATGCTTTGTTTGGTAAAGAAAATCAACAA-ATCGTGTATCCCAATGGTAACAAACTATTTTGCTT
65 ATGCTTTTTTTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGCTT
* * *
8795386 GGTATTTTGTG-AAATAACATATACTTTTA
130 GGTACTTTGTGAAAAGAACTTATACTTTTA
* * ** *
8795415 AGATGGAAGAAGTTTGAACGAGTTGAAAGACCAGTTTTGAAACCAAACAAAATAAATGAGAGAAT
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGAGAGAAA
* ** * * *
8795480 TGGTTTTTTCAGTACATAAAAGCAACAATATAGTGTATCCCAAAGGTAACAAACTATTTTGCTTC
66 TGCTTTTTTTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGCTTG
8795545 GTACTTTGTGAAAAGAACTTATACTTTTA
131 GTACTTTGTGAAAAGAACTTATACTTTTA
* * * * ** *
8795574 CGATGAAAGAAGTTTG-ATCGAGTTGAAAGACCAATTTTGACACCAAACAAAATGAGGGGGAGAA
1 CGATGGAAGAAGTTTGAAT-GAGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGAGAGAA
* * * * *
8795638 ATGCTTTTATTGGTAAACT-AAAGCAATAATATAGTGTATTCCAAAGATAACAAACTATTTTGCT
65 ATGCTTTTTTTGGTAAA-TAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGCT
* * *
8795702 TCGTACTTTGTGAAAATAATTTATACTTTTA
129 TGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * * * *
8795733 CGATGGAGGAATTTTGAATAAGTTGAAGGACCAACTTTGAAACTAAACAAAATGAAAGGA-AGAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAAT-AAATGAGAGAA
* * ** * * * ** *
8795797 ATGTTTTTTTTATGG-AAACAAAAGCAACAATATCTTGTAT-CTAATGGGAACTATGTATTTTCC
65 ATG-CTTTTTT-TGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGC
* * * * * *** *
8795860 TTGGT-TTTTCATGTAAAGAGCATAGGGTTCTA
128 TTGGTACTTT-GTGAAAAGAACTTATACTTTTA
* * * * * * *
8795892 CGATGGAGGGAGTTTGAATTAGTT-AAAGGACAAACTCTGAAACCAAATAAAATCAAT-AGAAGA
1 CGATGGAAGAAGTTTGAATGAGTTGAAA-GACCAACTTTGAAACCAAACAAAATAAATGAG-AGA
* * * *
8795955 AATGCTTTTTTTGGTAAAAAAAAAGAAGCAACAATATAGTATATCCCAAAGGTAACAAACAATTT
64 AATGCTTTTTTTGGT---AAATAA-AAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTT
*
8796020 TGCTTGGTACTTTGTGAAAAGAACTTATACTTTCA
125 TGCTTGGTACTTTGTGAAAAGAACTTATACTTTTA
** * *** ** * *** * *
8796055 TTATGG-TGAAAGCGCGAACAAGTTGAAGGACTGGCTTT-TAACCTAAACAAAATGAAAGGA-AG
1 CGATGGAAG-AAGTTTGAATGAGTTGAAAGACCAACTTTGAAACC-AAACAAAAT-AAATGAGAG
* ** *** * * *
8796117 AAA----TTTTTT--T--AT------TACAATATCTTGTATATGAATGGGAACTATCTATTTTGC
63 AAATGCTTTTTTTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGC
* * * * * *
8796168 TTCGT-TTTTCTTGTAAAGAACATTGA-GC-TTGA
128 TTGGTACTTT-GTGAAAAGAAC-TT-ATACTTTTA
* * * * ** * * * * *
8796200 TGATAGATG-ATTTTGAACAAGTTGAAACACCAAATTTGAAACCAAACAAAATGAATGGGAGCAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGAGAGAAA
* * * * * *
8796264 TGGTTTTTTTGGTACACAAAGGAAACAATATAGTGTATCCCAATGGTAACAAACTATTTTACTTG
66 TGCTTTTTTTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGCTTG
* * *
8796329 GTACTTTGTCAAAAGAATTTCTACTTTTA
131 GTACTTTGTGAAAAGAACTTATACTTTTA
* * * ** * * * *
8796358 TGATGGAGGAAGTTTTAACAAGTT-AATGAACCAACTTTCAAACCAAACAAAATGGAA-GGGAGA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAG-ACCAACTTTGAAACCAAACAAAAT-AAATGAGAGA
* * * * * * * * * * *
8796421 AAGGCCTTTTTAGGTAAACAAATGCAACAATAT-GTTGTATCCCTATGGGAGCTACCTA-TTTAC
64 AATGCTTTTTTTGGTAAATAAAAGCAACAATATAG-TGTATCCCAATGGTAACAAACTATTTTGC
* ** *
8796484 TTAGTACTTTACGATAAGAACTTATACTTTTA
128 TTGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * ** * *
8796516 TGATGGGTA-AAGTTTGAATAAGTTGAAAGGTCAACTTTGAAACCAAATAAAATGAAAGGA-AGA
1 CGAT-GGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAAT-AAATGAGAGA
* ** * * * * *
8796579 AAT-ATTTTTATTGGTAAACGAAAGCAACAATA-ACTTGTATCCCAATAGAAACTATCTATTTTG
64 AATGCTTTTT-TTGGTAAATAAAAGCAACAATATA-GTGTATCCCAATGGTAACAAACTATTTTG
* * ** * * * *
8796642 CTTGGTTCCTCATGTAAAGAACGTAAATTTTTA
127 CTTGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * * ** * * *
8796675 TGATAG-AGTAAATTTTACCGA-ATGAAAGGACCAAATTTGAAACCAAACAAAATGAAA-GGGAG
1 CGATGGAAG-AAGTTTGAATGAGTTGAAA-GACCAACTTTGAAACCAAACAAAAT-AAATGAGAG
* * *** * * *
8796737 AACTACTTTTTTTGGTAAGCGAAAGCAACACTAT-GTGTATCCCAATGGTAGC-AACTATTTTTC
63 AAATGCTTTTTTTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGC
* * *
8796800 TTGGTATTTTGTGAAAAGAACTCATACTTTTG
128 TTGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * * *
8796832 TGATGGAGGAAGTTTGAGTGAGTT-AATGGACCAACTTTGAGACCAAACAAAATAAATTGA-AGA
1 CGATGGAAGAAGTTTGAATGAGTTGAA-AGACCAACTTTGAAACCAAACAAAATAAA-TGAGAGA
* * * * * ** * * *
8796895 ATTGGCTTTTTCAT-G-ACACAAAAGCAACATTATACCGTATCTCAAAGATAACAAACTA-----
64 AAT-GCTTTTT-TTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTG
8796953 --T--T--TTT-TGAAAAGAACTTATACTTTTA
127 CTTGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * * * * * *
8796979 CGATGGAGGAAGTTTAAATCAGTTTAAGGACCAACTTTGAAACTAAACAACATGAAA-GGGAGAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAAT-AAATGAGAGAA
* * *
8797043 ATGCATTTTTTGGTAAACAAAAGCAACAATA-ACTTGTATCCCAATAGG------A-TATTTT--
65 ATGCTTTTTTTGGTAAATAAAAGCAACAATATA-GTGTATCCCAAT-GGTAACAAACTATTTTGC
** * *
8797098 TTTTTATTTTGTGACAAGAACTTATACTTTTA
128 TTGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * * * *
8797130 TGATGTAGGAAGTTTGAATGATTTGAAAGACCAACTTTGAAACCATACAAAATGAAACG-GAGAA
1 CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAAT-AAATGAGAGAA
* * * ** * * *
8797194 ATGTTTTTTTTTAATGTAAACAAAAGCAACAATATCTTGTATCCCAATGGAAAC-TATTCATTTT
65 ATG-CTTTTTTT--GGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACT-ATTTT
* * * * * * *
8797258 GCTTAGTTCTTTATGTAAAGAACATAGA-GTTTA
126 GCTTGGTACTTTGTGAAAAGAACTTATACTTTTA
* * * * * * * *
8797291 TGATGGAGGAAGTTTGAATGAATT-AAAGGACAAACCTTGAAACAAAAGAAAATGAATG-GTAGA
1 CGATGGAAGAAGTTTGAATGAGTTGAAA-GACCAACTTTGAAACCAAACAAAATAAATGAG-AGA
*
8797354 AATGCTTTTTTTGGTAGAAAAAAAAGCAACAATAT
64 AATGCTTTTTTTGGT--AAATAAAAGCAACAATAT
8797389 TGTACTTTGT
Statistics
Matches: 2091, Mismatches: 518, Indels: 297
0.72 0.18 0.10
Matches are distributed among these distances:
141 2 0.00
142 1 0.00
143 3 0.00
144 34 0.02
145 52 0.02
146 15 0.01
147 91 0.04
148 16 0.01
150 5 0.00
151 83 0.04
152 20 0.01
153 11 0.01
154 165 0.08
155 20 0.01
156 88 0.04
157 234 0.11
158 361 0.17
159 505 0.24
160 123 0.06
161 86 0.04
162 103 0.05
163 65 0.03
164 7 0.00
165 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (159 bp):
CGATGGAAGAAGTTTGAATGAGTTGAAAGACCAACTTTGAAACCAAACAAAATAAATGAGAGAAA
TGCTTTTTTTGGTAAATAAAAGCAACAATATAGTGTATCCCAATGGTAACAAACTATTTTGCTTG
GTACTTTGTGAAAAGAACTTATACTTTTA
Found at i:8797082 original size:147 final size:148
Alignment explanation
Indices: 8796804--8797241 Score: 415
Period size: 147 Copynumber: 2.9 Consensus size: 148
8796794 TTTTTCTTGG
* * *
8796804 TATTTTGTGAAAAGAACTCATACTTTTGTGATGGAGGAAGTTTGAGTGAG-TTAATGGACCAACT
1 TATTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTTAA-GGACCAACT
* * * * * *
8796868 TTGAGACCAAACAAAAT-AAATTGAAGAATTGGCTTTTTCATG-ACACAAAAGCAACATTATAC-
65 TTGAAACCAAACAAAATGAAA-CGGAGAAAT-GCTTTTT--TGTAAACAAAAGCAACAATA-ACT
* *
8796930 CGTATCTCAA-A-GATA-ACAAAC
125 TGTATCCCAATAGGATATACAAAC
* * * *
8796951 TATTTTTTGAAAAGAACTTATACTTTTACGATGGAGGAAGTTTAAATCAGTTTAAGGACCAACTT
1 TATTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTTAAGGACCAACTT
* * *
8797016 TGAAACTAAACAACATGAAAGGGAGAAATGCATTTTTTGGTAAACAAAAGCAACAATAACTTGTA
66 TGAAACCAAACAAAATGAAACGGAGAAATGC-TTTTTT-GTAAACAAAAGCAACAATAACTTGTA
******
8797081 TCCCAATAGGATATTTTTTTT
129 TCCCAATAGGATA-TACAAAC
* * *
8797102 TATTTTGTGACAAGAACTTATACTTTTATGATGTAGGAAGTTTGAATGA-TTTGAAAGACCAACT
1 TATTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTT-AAGGACCAACT
* * *
8797166 TTGAAACCATACAAAATGAAACGGAGAAATGTTTTTTTTTAATGTAAACAAAAGCAACAATATCT
65 TTGAAACCAAACAAAATGAAACGGAGAAATG---CTTTTT--TGTAAACAAAAGCAACAATAACT
8797231 TGTATCCCAAT
125 TGTATCCCAAT
8797242 GGAAACTATT
Statistics
Matches: 239, Mismatches: 36, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
145 1 0.00
146 5 0.02
147 100 0.42
148 8 0.03
149 4 0.02
150 3 0.01
151 80 0.33
153 5 0.02
154 32 0.13
155 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (148 bp):
TATTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTTAAGGACCAACTT
TGAAACCAAACAAAATGAAACGGAGAAATGCTTTTTTGTAAACAAAAGCAACAATAACTTGTATC
CCAATAGGATATACAAAC
Found at i:8797345 original size:161 final size:151
Alignment explanation
Indices: 8796354--8797387 Score: 440
Period size: 158 Copynumber: 6.7 Consensus size: 151
8796344 AATTTCTACT
* * * * * * * *
8796354 TTTATGATGGAGGAAGTTTTAA-CAAGTTAATGAACCAACTTTCAAACCAAACAAAATGGAAGGG
1 TTTATGATGGAGGAAGTTTGAATGAA-TTAAAGGACCAACTTTGAAACAAAACAAAATGAAACGG
* ** * * ** * * * *
8796418 AGAAAGGCCTTTTTAGGTAAACAAATGCAACAATATGTTGTATCCCTATGGGAGCTACCTATTTA
65 AGAAATGTTTTTTTTGGTAAACAAAAGCAACAATAACTTGTATCCCAATAGGA--TA--TTTTTT
* * * * *
8796483 CTTAGTACTTTACGATAAGAACTTATACT
126 CTTA-T--TTTATGACAAGAACATAGACG
* * * *
8796512 TTTATGATGG-GTAAAGTTTGAAT-AAGTTGAAAGG-TCAACTTTGAAACCAAATAAAATGAAA-
1 TTTATGATGGAG-GAAGTTTGAATGAA-TT-AAAGGACCAACTTTGAAACAAAACAAAATGAAAC
* * * *
8796573 GGAAGAAATATTTTTATTGGTAAACGAAAGCAACAATAACTTGTATCCCAATAGAAACTATCTAT
63 GG-AGAAATGTTTTTTTTGGTAAACAAAAGCAACAATAACTTGTATCCCAATAG-GA-TAT-T-T
* * * * **
8796638 TTTGCTTGGTTCCTCATGTA-AAGAACGTAAATT
123 TTT-CTT-ATT--TTATG-ACAAGAACATAGACG
* * * * ** * * * *
8796671 TTTATGATAGAGTAAATTTTACCGAATGAAAGGACCAAATTTGAAACCAAACAAAATGAAAGGGA
1 TTTATGATGGAGGAAGTTTGAATGAATTAAAGGACCAACTTTGAAACAAAACAAAATGAAACGGA
* ** * * * *
8796736 GAACTACTTTTTTTGGTAAGCGAAAGCAACACT-A-TGTGTATCCCAAT-GGTAGCAACTATTTT
66 GAAATGTTTTTTTTGGTAAACAAAAGCAACAATAACT-TGTATCCCAATAGG-A--TA-T-TTTT
* * * *
8796798 TCTTGGTATTTTGTGAAAAGAAC-TCATACT
125 TC-T--TATTTTATGACAAGAACAT-AGACG
* * * * * * * *
8796828 TTTGTGATGGAGGAAGTTTGAGTGAGTTAATGGACCAACTTTGAGACCAAACAAAAT-AAATTGA
1 TTTATGATGGAGGAAGTTTGAATGAATTAAAGGACCAACTTTGAAACAAAACAAAATGAAA-CGG
* ** * * * * *****
8796892 AGAATTGGCTTTTTCAT-G-ACACAAAAGCAACATTATAC-CGTATCTCAA-A-GATA-ACAAAC
65 AGAAAT-G-TTTTTTTTGGTAAACAAAAGCAACAATA-ACTTGTATCCCAATAGGATATTTTTTC
* * * * *
8796951 -TATTTTTTGAAAAGAACTTATACT
127 TTATTTTATGACAAGAACATAGACG
* * * * * * * *
8796975 TTTACGATGGAGGAAGTTTAAATCAGTTTAAGGACCAACTTTGAAACTAAACAACATGAAAGGGA
1 TTTATGATGGAGGAAGTTTGAATGAATTAAAGGACCAACTTTGAAACAAAACAAAATGAAACGGA
** *
8797040 GAAATGCATTTTTTGGTAAACAAAAGCAACAATAACTTGTATCCCAATAGGATATTTTTTTTTAT
66 GAAATGTTTTTTTTGGTAAACAAAAGCAACAATAACTTGTATCCCAATAGGATATTTTTTCTTAT
* * * *
8797105 TTTGTGACAAGAACTTATACT
131 TTTATGACAAGAACATAGACG
* * * *
8797126 TTTATGATGTAGGAAGTTTGAATGATTTGAAA-GACCAACTTTGAAACCATACAAAATGAAACGG
1 TTTATGATGGAGGAAGTTTGAATGAATT-AAAGGACCAACTTTGAAACAAAACAAAATGAAACGG
* *
8797190 AGAAATGTTTTTTTTTAATGTAAACAAAAGCAACAATATCTTGTATCCCAAT-GGAAACTATTCA
65 AGAAATG-TTTTTTTT--GGTAAACAAAAGCAACAATAACTTGTATCCCAATAGG--A-TATT--
8797254 TTTTGCTTAGTTCTTTATGTA-AAGAACATAGA-G
122 TTTT-CTTA--T-TTTATG-ACAAGAACATAGACG
* * * *
8797287 TTTATGATGGAGGAAGTTTGAATGAATTAAAGGACAAACCTTGAAACAAAAGAAAATG-AATGGT
1 TTTATGATGGAGGAAGTTTGAATGAATTAAAGGACCAACTTTGAAACAAAACAAAATGAAACGG-
* *
8797351 AGAAATGCTTTTTTTGGTAGAAAAAAAAGCAACAATA
65 AGAAATGTTTTTTTTGGT--AAACAAAAGCAACAATA
8797388 TTGTACTTTG
Statistics
Matches: 674, Mismatches: 143, Indels: 116
0.72 0.15 0.12
Matches are distributed among these distances:
145 4 0.01
146 4 0.01
147 97 0.14
148 5 0.01
149 4 0.01
151 81 0.12
152 8 0.01
153 2 0.00
154 33 0.05
155 1 0.00
156 11 0.02
157 84 0.12
158 130 0.19
159 103 0.15
160 37 0.05
161 55 0.08
162 14 0.02
163 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (151 bp):
TTTATGATGGAGGAAGTTTGAATGAATTAAAGGACCAACTTTGAAACAAAACAAAATGAAACGGA
GAAATGTTTTTTTTGGTAAACAAAAGCAACAATAACTTGTATCCCAATAGGATATTTTTTCTTAT
TTTATGACAAGAACATAGACG
Found at i:8797650 original size:285 final size:286
Alignment explanation
Indices: 8797105--8797672 Score: 635
Period size: 286 Copynumber: 2.0 Consensus size: 286
8797095 TTTTTTTTAT
* * * * ** * *
8797105 TTTGTGACAAGAACTTATACTTTTATGATGTAGGAAGTTTGAATGATTTGAAAGACCAACTTTGA
1 TTTGTGAAAAGAACTTATACTTGTATGATGAAGGAAGTTGGAACAAGTTGAAAGACCAACTTTAA
* * * * *
8797170 AACCATACAAAATGAAACGGAGAAATGTTTTTTTTTAATGTAAACAAAAGCAACAATATCTTGTA
66 AACCAAACAAAATGAAACGAAGAAATGTCTTTTTTT-ATGCAAACAAAAGCAACAATACCTTGTA
* * ** **
8797235 TCCCAATGGAAACTATTCATTTTGCTTAGTTCTTTATGTAAAGAACATAGAGTTTATGATGGAGG
130 TCACAATGGAAACTATTCATTTTGCTTAGTTCTTTATGAAAAGAACATAGAGTTTACAATGGAAA
* * *
8797300 AAGTTTGAATGAATTAAAGGACAAACCTTGAAACAAAAGAAAATGAATGGTAGAAATGCTTTTTT
195 AAGTTTGAATGAACTAAAGGACAAACCTTAAAACAAAAGAAAATGAATGGGAGAAATGCTTTTTT
8797365 TGGTAGAAAAAAAAGCAACAATATTGTAC
260 TGGT--AAAAAAAAGCAACAATATTGTAC
* * *
8797394 TTTGTGAAAAGAAGTTAT-CTTGTATGATGAAGGAAGTTGGAACAAGTTGAAGGATCAACTTTAA
1 TTTGTGAAAAGAACTTATACTTGTATGATGAAGGAAGTTGGAACAAGTTGAAAGACCAACTTTAA
* *
8797458 AACCAAACAAAATGAAATGAAGAAGTG-CTTTTTTT-TGCAAACAAATA-CAACAATACCTTGTA
66 AACCAAACAAAATGAAACGAAGAAATGTCTTTTTTTATGCAAACAAA-AGCAACAATACCTTGTA
* * * * * * * * *
8797520 TCACTATGGGAACTATTTATTTTGCTTAGTGT-TTTGTGAAAATAACTTATATTTTTACAATTGA
130 TCACAATGGAAACTATTCATTTTGCTTAGT-TCTTTATGAAAAGAACATAGA-GTTTACAATGGA
* * * * * * *
8797584 AAAAGTTTGAATGAGCTGAAGGACCAACTTTAAAA-ACAAATAAAATGACTGGGAGAAATGTTTT
193 AAAAGTTTGAATGAACTAAAGGACAAACCTTAAAACA-AAAGAAAATGAATGGGAGAAATGCTTT
*
8797648 TTTTGGTAAACAAAAGCAACAATAT
257 TTTTGGTAAAAAAAAGCAACAATAT
8797673 CGTGCATCTC
Statistics
Matches: 231, Mismatches: 44, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
284 17 0.07
285 64 0.28
286 67 0.29
287 7 0.03
288 60 0.26
289 16 0.07
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.32
Consensus pattern (286 bp):
TTTGTGAAAAGAACTTATACTTGTATGATGAAGGAAGTTGGAACAAGTTGAAAGACCAACTTTAA
AACCAAACAAAATGAAACGAAGAAATGTCTTTTTTTATGCAAACAAAAGCAACAATACCTTGTAT
CACAATGGAAACTATTCATTTTGCTTAGTTCTTTATGAAAAGAACATAGAGTTTACAATGGAAAA
AGTTTGAATGAACTAAAGGACAAACCTTAAAACAAAAGAAAATGAATGGGAGAAATGCTTTTTTT
GGTAAAAAAAAGCAACAATATTGTAC
Found at i:8797715 original size:159 final size:157
Alignment explanation
Indices: 8797438--8798965 Score: 590
Period size: 159 Copynumber: 9.7 Consensus size: 157
8797428 AGTTGGAACA
* * * * * *
8797438 AGTTGAAGGATCAACTTTAAAACCAAACAAAATGAAAT-GAAGAAGTGCTTTTTTTTGCAAACAA
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATG-AATGGCAGAAATGC-TTTTTTGGTAAACAA
* * * * * * * ** * **
8797502 ATA-CAACAATACCTTGTATCACTATGGGAACTATTTATTTTGCTTAGTGTTTTGTGAAAATAAC
64 A-AGCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGCTTGGTACTTTGTGAAAA-AAC
8797566 TTATATTTTTACAATTGAAAAAGTTTGAATG
127 TTATATTTTTACAATTGAAAAAGTTTGAATG
* * * * * * *
8797597 AGCTGAAGGACCAACTTTAAAAACAAATAAAATGACTGGGAGAAATGTTTTTTTTGGTAAACAAA
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATGGCAGAAATG-CTTTTTTGGTAAACAAA
* * *
8797662 AGCAACAATATCGTGCATCTCAATGTTAA-AAGCTATTTTGCTTTTGTACTTTGTGAAAAAATCT
65 AGCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGC-TTGGTACTTTGTGAAAAAA-CT
* *
8797726 TATACTTTTACAA-TGAAGGAAA-TTTAAACT-
128 TATATTTTTACAATTGAA--AAAGTTTGAA-TG
* * * * * *
8797756 AGTTAAAGAACCAACTTTGAAACCAAGCCAAATGAATGGCAGAAATGCTTTTTTGGTATAGAAAA
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATGGCAGAAATGCTTTTTTGGTAAACAAAA
* * * *
8797821 GCAATAATATCGTGCATCCCAATGGTAACAATCTATTTTGCTTGGTGCTTTGTGAAAAGAC----
66 GCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGCTTGGTACTTTGTGAAAAAACTTAT
* * *
8797882 -TTTTTACGATAGAGAAAGTTTGAATG
131 ATTTTTACAATTGAAAAAGTTTGAATG
* * **
8797908 AGTTGAAGGATCAACTTTGAAACCAAACAAAATGAAAT-G-ATGAAATGTTTTTTTTTCATAAAT
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATG-AATGGCA-GAAATG--CTTTTTTGGTAAA-
* * * * * * * * * * * *
8797971 GAAAA-TAACAATATCTTGTATTCTAAT--AAACTATCTATTTTGCTTGGTTCTTTATGTAAAGA
61 CAAAAGCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGCTTGGTACTTTGTG-AAAAA
** * * ** * * * *
8798033 ACAAAGAGTTTTATGATGGAGAAAA-TCTAAACG
125 ACTTATATTTTTACAATTGA-AAAAGTTTGAATG
* * * * * * *
8798066 AGTTAAAGGACCAATTTTGAAATCGAACAATATGAATGGGAGAAACT-TTTTTATTGGTAAACAC
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATGGCAGAAA-TGCTTTT-TTGGTAAACA-
* * * * * * * * *
8798130 AAA-TAACAATATCTTGTATACCAATAGG-AACTATCTGTTTTGCTTGGTTCTTCATGT-AAAGA
63 AAAGCAACAATATCGTGCATCCCAAT-GGTAACAAGCTATTTTGCTTGGTACTT--TGTGAAAAA
* * * * * * *
8798192 ACATAAATTTTTAATAATGGAGTAAA-TTTCACTG
125 ACTTATATTTTT-ACAATTGA-AAAAGTTTGAATG
* * * * * * * * * ** **
8798226 AATAGAATGACCAAATTTCAATCCAAACAAAATGAAAAGG-AGAACTGTTTGTTTTTTTTGTA-A
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATG-AATGGCAGAAATG-CT-TTTTTGGTAAACA
* * * ** * *
8798289 AAA-CAACAA-ATCATGTATCCTAATGGTAACAAATTATTTTGATTAGTACTTTGTGAAAAGAAC
63 AAAGCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGCTTGGTACTTTGTGAAAA-AAC
* * ** * ** * *
8798352 CTATACTTTTATGATGGAGGAAGTTTAAATA
127 TTATATTTTTACAATTGAAAAAGTTTGAATG
* * * * * ** * *
8798383 AGTTGACA-AACCAATTTTGAAACCAAACAAAATAAATTGG-AGAATTGGTTTTTTTACTACATA
1 AGTTGA-AGGACCAACTTTGAAACCAAACAAAATGAA-TGGCAGAAAT-GCTTTTTTGGTAAACA
** * * * *
8798446 AAAGCAACAATATAATGTATCCCAAAGGTAACAAACTATTTTGCTTGGTACTTCGTGAAAAGAAC
63 AAAGCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGCTTGGTACTTTGTGAAAA-AAC
* *
8798511 TTATACTTTTACAA-TGAAAAAAGTTTGGATG
127 TTATATTTTTACAATTG-AAAAAGTTTGAATG
* * * * * * ***
8798542 AGTTAAAGGACCAATTTTGAAACCAAA-TAAATTAAAGGAAGAAATGCATTTTTCAATAAACAAA
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATGGCAGAAATGC-TTTTTTGGTAAACAAA
* * * * ** * *
8798606 AGCAACAATATCTTGTATCCCAATGGGAACTATTTATTTTGCTTAGTATTTTGTGAAAAAAGCTT
65 AGCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGCTTGGTACTTTGTGAAAAAA-CTT
* * * * **
8798671 ATACTTTTACGA-TGTCAGAAGTTTGAACA
129 ATATTTTTACAATTG-AAAAAGTTTGAATG
* * * * * * *
8798700 AGTTAAAGGACCAACTTTGAAACTAAACAAAATAAAAGGGATAAATGCTTTTTCTTTGGTAAATG
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATGGCAGAAATGC--TTT-TTTGGTAAA-C
* * * ** ** * * *
8798765 AAAA-CAACAATTTCTTGTATGGCAATGCG-AATTATCTATTTTGCTGGGTACTTCATGT-AAAT
62 AAAAGCAACAATATCGTGCATCCCAATG-GTAACAAGCTATTTTGCTTGGTACTT--TGTGAAAA
* * * ** * ***
8798827 AACATAGAGTTTTATGATGGTGGAAGTTTGAATG
124 AACTTATATTTTTACAATTGAAAAAGTTTGAATG
* ** * *
8798861 AGTT-AAGGGACAAACTTTGAAACCAAGTAAAATGAAT-GCTAGAAATGCATTCTTTGGTAAAAA
1 AGTTGAA-GGACCAACTTTGAAACCAAACAAAATGAATGGC-AGAAATGC-TTTTTTGGTAAACA
** * * * * *
8798924 AAAAAAACAATATAGTGTATCCGAATGGCAACAAACTATTTT
63 AAAGCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTT
8798966 ATGTAAACAA
Statistics
Matches: 1059, Mismatches: 244, Indels: 132
0.74 0.17 0.09
Matches are distributed among these distances:
151 5 0.00
152 73 0.07
153 10 0.01
154 25 0.02
155 5 0.00
156 20 0.02
157 93 0.09
158 298 0.28
159 344 0.32
160 56 0.05
161 113 0.11
162 14 0.01
163 3 0.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.33
Consensus pattern (157 bp):
AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATGGCAGAAATGCTTTTTTGGTAAACAAAA
GCAACAATATCGTGCATCCCAATGGTAACAAGCTATTTTGCTTGGTACTTTGTGAAAAAACTTAT
ATTTTTACAATTGAAAAAGTTTGAATG
Found at i:8798095 original size:158 final size:157
Alignment explanation
Indices: 8797907--8798194 Score: 366
Period size: 157 Copynumber: 1.8 Consensus size: 157
8797897 AAGTTTGAAT
* * * *
8797907 GAGTTGAAGGATCAACTTTGAAACCAAACAAAATGAAAT-GATGAAATGTTTTTTTTTCATAAAT
1 GAGTTAAAGGACCAACTTTGAAACCAAACAAAATG-AATGGA-GAAA-CTTTTTTATTCATAAA-
* * * *
8797971 GA-AAATAACAATATCTTGTATTCTAATA-AACTATCTATTTTGCTTGGTTCTTTATGTAAAGAA
62 CACAAATAACAATATCTTGTATACCAATAGAACTATCTATTTTGCTTGGTTCTTCATGTAAAGAA
8798034 CAAAGAGTTTTATGATGGAGAAAATCTAAAC
127 CAAAGAGTTTTATGATGGAGAAAATCTAAAC
* * * * **
8798065 GAGTTAAAGGACCAATTTTGAAATCGAACAATATGAATGGGAGAAACTTTTTTATTGGTAAACAC
1 GAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAAT-GGAGAAACTTTTTTATTCATAAACAC
*
8798130 AAATAACAATATCTTGTATACCAATAGGAACTATCTGTTTTGCTTGGTTCTTCATGTAAAGAACA
65 AAATAACAATATCTTGTATACCAATA-GAACTATCTATTTTGCTTGGTTCTTCATGTAAAGAACA
8798195 TAAATTTTTA
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
156 1 0.01
157 39 0.35
158 33 0.30
159 37 0.34
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (157 bp):
GAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAATGGAGAAACTTTTTTATTCATAAACACA
AATAACAATATCTTGTATACCAATAGAACTATCTATTTTGCTTGGTTCTTCATGTAAAGAACAAA
GAGTTTTATGATGGAGAAAATCTAAAC
Found at i:8798454 original size:158 final size:156
Alignment explanation
Indices: 8798286--8798753 Score: 478
Period size: 158 Copynumber: 3.0 Consensus size: 156
8798276 GTTTTTTTTG
* * *
8798286 TAAAAACAACAA-ATCATGTATCCTAATGGTAACAAATTATTTTGATTAGTACTTTGTGAAAAGA
1 TAAAAGCAACAATATCATGTATCCCAATGGTAACAAATTATTTTGCTTAGTACTTTGTGAAAAGA
* * * *
8798350 ACCTATACTTTTATGATGGAGGAAGTTTAAATAAGTTGACAA-ACCAATTTTGAAACCAAACAAA
66 ACTTATACTTTTACGAT-GAAGAAGTTTGAATAAGTT-A-AAGACCAATTTTGAAACCAAACAAA
* ** * * *
8798414 ATAAATTGG-AGAATTGGTTTTTTTACTACA
128 ATAAA--GGAAGAAATGCATTTTTCAATAAA
* * * * *
8798444 TAAAAGCAACAATATAATGTATCCCAAAGGTAACAAACTATTTTGCTTGGTACTTCGTGAAAAGA
1 TAAAAGCAACAATATCATGTATCCCAATGGTAACAAATTATTTTGCTTAGTACTTTGTGAAAAGA
* * * * * *
8798509 ACTTATACTTTTACAATGAAAAAAGTTTGGATGAGTTAAAGGACCAATTTTGAAACCAAATAAAT
66 ACTTATACTTTTACGATG-AAGAAGTTTGAATAAGTTAAA-GACCAATTTTGAAACCAAACAAAA
8798574 TAAAGGAAGAAATGCATTTTTCAATAAA
129 TAAAGGAAGAAATGCATTTTTCAATAAA
* * * * * *
8798602 CAAAAGCAACAATATCTTGTATCCCAATGGGAACTATTTATTTTGCTTAGTATTTTGTGAAAA-A
1 TAAAAGCAACAATATCATGTATCCCAATGGTAACAAATTATTTTGCTTAGTACTTTGTGAAAAGA
* * * *
8798666 AGCTTATACTTTTACGATGTCAGAAGTTTGAACAAGTTAAAGGACCAACTTTGAAACTAAACAAA
66 A-CTTATACTTTTACGATG-AAGAAGTTTGAATAAGTTAAA-GACCAATTTTGAAACCAAACAAA
* *
8798731 ATAAAAGGGATAAATGC-TTTTTC
128 AT-AAAGGAAGAAATGCATTTTTC
8798754 TTTGGTAAAT
Statistics
Matches: 255, Mismatches: 48, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
157 6 0.02
158 140 0.55
159 109 0.43
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (156 bp):
TAAAAGCAACAATATCATGTATCCCAATGGTAACAAATTATTTTGCTTAGTACTTTGTGAAAAGA
ACTTATACTTTTACGATGAAGAAGTTTGAATAAGTTAAAGACCAATTTTGAAACCAAACAAAATA
AAGGAAGAAATGCATTTTTCAATAAA
Found at i:8799312 original size:130 final size:130
Alignment explanation
Indices: 8799149--8799462 Score: 441
Period size: 130 Copynumber: 2.4 Consensus size: 130
8799139 AACTTTTACA
* * * *
8799149 ATGGAAGAAGTTTGAATAAGTTGATGGGCCAACTTTGAAACCAAATGAAATGAAAACAACAATTC
1 ATGGAGGAAGTTTGAATAAGTTGAAGGGACAACTTTGAAACCAAATAAAATGAAAACAACAATTC
* *
8799214 CTTGTATGGTAATACGAATTATCTATTTTGTTAGGTACTTCATATAAAGAACAAAGAGTTTTATG
66 CTTGTATGGCAATACGAATTATCTATTTTGCTAGGTACTTCATATAAAGAACAAAGAGTTTTATG
* *
8799279 ATGGAGGAAGTTTTAATAAGTTGAAGGGACAACTTTGAAACCAAATAAAATGAAAACAACAATTT
1 ATGGAGGAAGTTTGAATAAGTTGAAGGGACAACTTTGAAACCAAATAAAATGAAAACAACAATTC
** * * *
8799344 CTTGTATGGCAATGTGAATTATCTATTTTGCTGGGTACTTCATGTAAAGAACATAGAGTTTTATG
66 CTTGTATGGCAATACGAATTATCTATTTTGCTAGGTACTTCATATAAAGAACAAAGAGTTTTATG
* * ** **
8799409 ATGGTGAAAGTTTGAAGGAGTT-AAGGGACAAACTTTGAAACCAAGCAAAATGAA
1 ATGGAGGAAGTTTGAATAAGTTGAAGGGAC-AACTTTGAAACCAAATAAAATGAA
8799463 TGCTAGAAAT
Statistics
Matches: 163, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
129 7 0.04
130 156 0.96
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.30
Consensus pattern (130 bp):
ATGGAGGAAGTTTGAATAAGTTGAAGGGACAACTTTGAAACCAAATAAAATGAAAACAACAATTC
CTTGTATGGCAATACGAATTATCTATTTTGCTAGGTACTTCATATAAAGAACAAAGAGTTTTATG
Found at i:8799857 original size:228 final size:224
Alignment explanation
Indices: 8799463--8799918 Score: 750
Period size: 228 Copynumber: 2.0 Consensus size: 224
8799453 GCAAAATGAA
*
8799463 TGCTAGAAATGCATTCTTTGGTAAAAAAAAAAAAACAATATAGTGTATCCAAATGGCAACAAACT
1 TGCTAGAAATGCATTCTTAGGTAAAAAAAAAAAAACAATATAGTGTATCCAAATGGCAACAAACT
* * *
8799528 ATTTTATGGTGAAACAAACTTATGCTTTTATGGTGGAAAAAGTTGGAACAGGTTGAAGGACCAAC
66 ATTTTATGGTGAAACAAACCTATGCTTTTATGGTAGAAAAAGTTGGAACAAGTTGAAGGACCAAC
* **
8799593 TTTTAAACCAAGCAAAATTAAAAGGAGAAATATTTTTCAGCATACAAATGAAACAATATCTTGTA
131 TTTTAAACCAAGCAAAATGAAAAAAAGAAATATTTTTCAGCATACAAATGAAACAATATCTTGTA
*
8799658 TCACAATGGGAACTATTTTATTTTGCTTGG
196 TCACAAAGGGAACTA-TTTATTTTGCTTGG
* * *
8799688 TGCTAGAAGTGCATTCTTAGGTAAAAAAAAAAAAGAAACAATATAGTGTATTCGAATGGCAACAA
1 TGCTAGAAATGCATTCTTAGGT--AAAAAAAAAA-AAACAATATAGTGTATCCAAATGGCAACAA
**
8799753 ACTATTTTATGGTGAAACAAACCTATGCTTTTATGGTAGAGGAAGTTGGAACAAGTTGAAGGACC
63 ACTATTTTATGGTGAAACAAACCTATGCTTTTATGGTAGAAAAAGTTGGAACAAGTTGAAGGACC
*
8799818 AACTTTTAAACCAAGCAAAATGAAAAAAAGAAATATTTTTCTGCATACAAATGAAACAATATCTT
128 AACTTTTAAACCAAGCAAAATGAAAAAAAGAAATATTTTTCAGCATACAAATGAAACAATATCTT
8799883 GTATCACAAAGGGAACTATTTATTTTGCTTGG
193 GTATCACAAAGGGAACTATTTATTTTGCTTGG
8799915 TGCT
1 TGCT
8799919 TTGTGAAAAT
Statistics
Matches: 214, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
225 20 0.09
227 28 0.13
228 166 0.78
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.29
Consensus pattern (224 bp):
TGCTAGAAATGCATTCTTAGGTAAAAAAAAAAAAACAATATAGTGTATCCAAATGGCAACAAACT
ATTTTATGGTGAAACAAACCTATGCTTTTATGGTAGAAAAAGTTGGAACAAGTTGAAGGACCAAC
TTTTAAACCAAGCAAAATGAAAAAAAGAAATATTTTTCAGCATACAAATGAAACAATATCTTGTA
TCACAAAGGGAACTATTTATTTTGCTTGG
Found at i:8800390 original size:160 final size:158
Alignment explanation
Indices: 8799780--8800820 Score: 715
Period size: 160 Copynumber: 6.6 Consensus size: 158
8799770 CAAACCTATG
* * * * * * * **
8799780 CTTTTATGGTAGAGGAAGTTGGAACAAGTTGAAGGACCAACTTTTAAACCAAGCAAAATGAAAAA
1 CTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAAAGG
* * * * * * * * *
8799845 AAGAAAT-ATTTTTCTGCATACA-AATGAAACAATATCTTGTATCACAAAGGGAACTATTTATTT
66 AAGAAATGCTTTTTTTG-GTAAATAAAGCAACAATATCTTGTATCCCAACGGGAACTATCTATTT
* *
8799908 TGCTTGGT-GCTTTGTGAAAATAACTTAAA
130 TGCTTGGTAG-TTTGTGAAAAGAACTTATA
* * * * * * *
8799937 CTTTTACAATGGGGGAAGTTTGAATAAGTTGAAGGGCCAACTTTGAAACCAAATAAAATGAATGG
1 CTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAAAGG
* * ** * ** * **
8800002 GAGAAATGCTTTTTTTGGTAAACAAATGCAACAATATAGTGTATCCCAATGTTAA-AAAATATTT
66 AAGAAATGCTTTTTTTGGTAAATAAA-GCAACAATATCTTGTATCCCAACGGGAACTATCTATTT
* *
8800066 TGCTTGGTACTTTGTGAAAAGATCTTATA
130 TGCTTGGTAGTTTGTGAAAAGAACTTATA
* * * ** *
8800095 CTTTTACGA-AGGAGGAAGTTTAAACAAGTTAAAGGA-CAACTTTAAAATTAAACAAAATGAAAA
1 CTTTTACGATA-GAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAAAG
* * ** * * * * * *
8800158 AAAGAAATG-TTTTTTTGGTAAACAAAATAAACAATATCCTGAATCCCTACGGAAATTATTTATT
65 GAAGAAATGCTTTTTTTGGTAAA-TAAAGCAACAATATCTTGTATCCCAACGGGAACTATCTATT
* *
8800222 TTGCTTGGTAGTTTGTGAAAAAAACTTACA
129 TTGCTTGGTAGTTTGTGAAAAGAACTTATA
* * * * * * * * *
8800252 CTTTTATGATAAATGACGTTTGAAGAAGTTAAAGGACTAACCTTGAAACCAAATAAAATGAAAGC
1 CTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAAAGG
* ** * *
8800317 AAGAAATGCCTTTTTTTTGGTAAATAAAGGAACAATATCTTGTATTTCAATGGGAACTGTCTATT
66 AAGAAATG-C-TTTTTTTGGTAAATAAAGCAACAATATCTTGTATCCCAACGGGAACTATCTATT
* *
8800382 TTGCTTGGTAATATGTGAAAAGAACTTATA
129 TTGCTTGGTAGTTTGTGAAAAGAACTTATA
* * * *
8800412 CTTTTA-TAGTAGATGAAGTTTGAATAAGTT-GAGGAGCCAACTTTGAAACCAAACAAAATAAAA
1 CTTTTACGA-TAGAGGAAGTTTGAATAAGTTAAAGGA-CCAACTTTGAAACCAAACAAAATGAAA
* * * * * *
8800475 GGAAGAAATGATTTTTCTTGGGAATGTAAAGCTACAATATCTTGTTTCCCAACGAGAACTATCTA
64 GGAAGAAATGCTTTTT-TTGGTAA-ATAAAGCAACAATATCTTGTATCCCAACGGGAACTATCTA
** * * * *
8800540 TTTTGCTTGGTTCTTTTTGTAGAGAA-TATAAA
127 TTTTGCTTGGTAGTTTGTGAAAAGAACT-TATA
* * * * ** ** * *
8800572 TTTTTACAATGGAGTAAGTTTGTCTGAA-TGGATGGACCAACTTTGAAACCAAACAAAAT-AAAA
1 CTTTTACGATAGAGGAAGTTTGAAT-AAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAAAG
** * * * ** ** * * *
8800635 GAGAGAAATGCTAGTTTAGGTAAAAACAAGCAACAATATCATGTATCATAGTGGTAACAAACTAT
65 GA-AGAAATGCTTTTTTTGGTAAATA-AAGCAACAATATCTTGTATCCCAACGGGAACTATCTAT
* * *
8800700 TTTGTTTAGTAGTTTATGAAAAGAACTTATA
128 TTTGCTTGGTAGTTTGTGAAAAGAACTTATA
* * ** * * * * *
8800731 CTTTTATGATAAAGGAA-TTTGAATGTGTTGAAGAATCAATTTTGAAACCAAACAAAGTGAACA-
1 CTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAA-AG
* *
8800794 GTAGAAATACTTTTTTTGGTAAATAAA
65 GAAGAAATGCTTTTTTTGGTAAATAAA
8800821 ATCAAACAAT
Statistics
Matches: 674, Mismatches: 184, Indels: 52
0.74 0.20 0.06
Matches are distributed among these distances:
156 32 0.05
157 152 0.23
158 150 0.22
159 105 0.16
160 216 0.32
161 19 0.03
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (158 bp):
CTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAACCAAACAAAATGAAAGG
AAGAAATGCTTTTTTTGGTAAATAAAGCAACAATATCTTGTATCCCAACGGGAACTATCTATTTT
GCTTGGTAGTTTGTGAAAAGAACTTATA
Found at i:8803619 original size:153 final size:154
Alignment explanation
Indices: 8803246--8804283 Score: 565
Period size: 162 Copynumber: 6.6 Consensus size: 154
8803236 GGAGTTAAAG
* * ** * *
8803246 GACCAACTTTTAAACCAAACAAAATGAAAAGGAGCAATGCTTTTTTGGAAAAGAAAAGCAACAAT
1 GACCAACTCTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTGGAAAAAAAAAGCAACAAT
* * * * * *
8803311 ATCATGTATCCCAATGGTGAGAAACTATTTTCCTTTGGGCTTTGTGAAAATAACATATACTTTTA
66 ATCATGTATCCTAATGGTAACAAACTATTTT-GTTTGGGCTTTGTAAAAATAACATATAC--TAA
* * *
8803376 TGATGGAGAAGTTTGAATGAATTGAAG
128 TGAGGGAGAAGTTTGAACGAATTGAAA
* * * * *
8803403 GGCCAACTCTGAAACCAAACAAAATGAATGGGATAAAAGCTTTTTTTGGTAAACAAAAGCAACAA
1 GACCAACTCTGAAACCAAACAAAATGAATGGGAGAAATGC-TTTTTTGGAAAAAAAAAGCAACAA
* * * *
8803468 CATCTTGTATCGTAATGGTAACAAACTATTTTGTTTGGTGCTTTGTAAAAATAACATTTAC-AAT
65 TATCATGTATCCTAATGGTAACAAACTATTTTGTTTGG-GCTTTGTAAAAATAACATATACTAAT
*
8803532 -AGGGA-AAGTTTGAACGAGTTGAAA
129 GAGGGAGAAGTTTGAACGAATTGAAA
**** *
8803556 GACCAACAT-TGAAACCAAATGGTATGAGTGGGAGAAATGCTTTTATTGGAAAAAAAAAGCAACA
1 GACCAAC-TCTGAAACCAAACAAAATGAATGGGAGAAATGCTTTT-TTGGAAAAAAAAAGCAACA
* **** * * *
8803620 ATATCAAGTATCCTAATGGTAACAAACTATTTTGCTTCATACTTTATGAATAA-AACATGTACTT
64 ATATCATGTATCCTAATGGTAACAAACTATTTTG-TTTGGGCTTTGT-AAAAATAACATATAC--
* * * * *
8803684 TTACGATGGAGGAAGTTTGAACAAATTCAAA
125 TAATGAGGGA-GAAGTTTGAACGAATTGAAA
* * * * * *
8803715 GACTAACTTTGAAACCAAACAAAATGAATAGGAGAAATGCATTTTTTTTTAGTAAAGAAAAGCAA
1 GACCAACTCTGAAACCAAACAAAATGAATGGGAGAAATGC----TTTTTTGGAAAAAAAAAGCAA
* * * ** ** * * *
8803780 TATTATCATGTTTCCTAATTCTAACAAACTATTTTGCTTTGCACTTTATGAAAAA-AACTTGTAC
62 CAATATCATGTATCCTAATGGTAACAAACTATTTTG-TTTGGGCTTTGT-AAAAATAACATATAC
* * * * *
8803844 TTTTACGATGGAGGAAGTTTGAA-TAAGTTGAAG
125 --TAATGAGGGA-GAAGTTTGAACGAA-TTGAAA
* * * * ** * *
8803877 GACCAACTTTAAAACCAAACAAAATGAATGGGGACAAAAGCTTTTTTTGGTGGACAAAAA-CAAT
1 GACCAACTCTGAAACCAAACAAAATGAAT-GGGAGAAATGC-TTTTTTGG-AAAAAAAAAGCAAC
* * * * * *
8803941 ATTATCATGTATCCTAATAGTAACAAACTA---T-TTT--GCTTATGAAAAAAACTTACGCTTTT
63 AATATCATGTATCCTAATGGTAACAAACTATTTTGTTTGGGCTT-TG-TAAAAA--TA-ACATAT
* * *
8804000 AC-AATG-GAGGA-AA-TTTGAACTAGTTAAAA
123 ACTAATGAG-GGAGAAGTTTGAACGAATTGAAA
* * * * * **
8804029 GACCAACTTTGAAACTAAACAAAATGAAAGGGAGAAATGCCATTTTTGGTAAATGAAAGCAACAA
1 GACCAACTCTGAAACCAAACAAAATGAATGGGAGAAATG-CTTTTTTGGAAAAAAAAAGCAACAA
* * * * ** *
8804094 AAT--TGTATATCTCAATGGTAACTAACTATTTTGCTTGGTATTTTGTTAAAAA-AACTTATAAT
65 TATCATGTAT-CCT-AATGGTAACAAACTATTTTGTTTGG-GCTTTG-TAAAAATAACATAT-A-
* * * * *
8804156 TTTATGATGTATGAAGTTTGTACGAATTGAAA
124 CTAATGAGGGA-GAAGTTTGAACGAATTGAAA
* * * * * * * *
8804188 GACCAATTTTGAAATCAAACAAAATGAATGGTAGAAATGATTTTTTGG-TAAACAAACCAAACAA
1 GACCAACTCTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTGGAAAAAAAAAGC-AACAA
*
8804252 TAT-AGTGTATCCTAATGTTAACAAACTATTTT
65 TATCA-TGTATCCTAATGGTAACAAACTATTTT
8804284 TCTCGATAAA
Statistics
Matches: 686, Mismatches: 146, Indels: 97
0.74 0.16 0.10
Matches are distributed among these distances:
149 5 0.01
150 6 0.01
151 34 0.05
152 41 0.06
153 117 0.17
154 20 0.03
155 12 0.02
156 6 0.01
157 56 0.08
158 110 0.16
159 95 0.14
160 44 0.06
161 7 0.01
162 121 0.18
163 12 0.02
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (154 bp):
GACCAACTCTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTGGAAAAAAAAAGCAACAAT
ATCATGTATCCTAATGGTAACAAACTATTTTGTTTGGGCTTTGTAAAAATAACATATACTAATGA
GGGAGAAGTTTGAACGAATTGAAA
Found at i:8803845 original size:162 final size:159
Alignment explanation
Indices: 8802663--8804283 Score: 928
Period size: 159 Copynumber: 10.3 Consensus size: 159
8802653 TGATAAAAAC
* * * * *
8802663 AAGCAATAATATCATGTATCATAATGGTAACAAAATATTTTG-TTTGATACTTTGTGAAAAGAAC
1 AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTTG-TACTTTATGAAAAAAAC
* * * * * * * *** *
8802727 ATATATTTTTACGATAGAAGAAGTTTGAATGTA-TTGAAGGATCAATTTTGAAATTGATCAAAAT
65 ATATACTTTTACGATGGAGGAAGTTTGAACG-AGTTGAAAGACCAACTTTGAAACCAAACAAAAT
* * * ** * *
8802791 GATTAGTAAAAAT-AATTTTTTGGTAAACAA
129 GAATAGGAGAAATGCTTTTTTTGGAAAAGAA
* * * * ** * * *
8802821 AATCGAACAATAT-A-GTATATCTCAATGGTAAAAAACTGTTTCACTTGGCACTTTATGAAAAGA
1 AAGC-AACAATATCATGTAT-CCT-AATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAA
* * * * * * * * *
8802884 ACATATACTTTTACAATAGAAGAAGTTTGAA-GAACTTAAAATACTAACTTTGAAACCAAATAGA
63 ACATATACTTTTACGATGGAGGAAGTTTGAACG-AGTTGAAAGACCAACTTTGAAACCAAACAAA
* * * * *
8802948 AT-AAAAGGAAGAAGTGCTTTTCTTGGCAAACAA
127 ATGAATAGG-AGAAATGCTTTTTTTGGAAAAGAA
* * * * * * * * ** * ** * * *
8802981 AATCAACAATATCTTGTACCCCAATAGAAACTATCTATTTTAATTGGTACCATGTGAAAAGAACT
1 AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAAACA
* * * * * * *
8803046 TATACTTTTACTATGGA-TAAGTTTGAATGA-CTCAAAGTATCAACATTGAAACCAAACAAAATG
66 TATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAAG-ACCAACTTTGAAACCAAACAAAATG
* * **
8803109 AAT-GGAGGAAATGTTTTTTTTTTTTTGTAACTGAA
130 AATAGGA-GAAATG-----CTTTTTTTGGAAAAGAA
* * * * **** * * * *
8803144 CA-CAACAATTTCTTGTATCCTAACAGG-AATTGTCTATTTTGCTTGGT-TTTTCATGTAAAGAA
1 AAGCAACAATATCATGTATCCTAA-TGGTAACAAACTATTTTGCTTTGTACTTT-ATGAAAAAAA
* * * * * * *
8803206 CAAAGAGTTTTATGATGGAGGAAATTTGAAGGAGTT-AAAGGACCAACTTTTAAACCAAACAAAA
64 CATATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAA-GACCAACTTTGAAACCAAACAAAA
* *
8803270 TGAAAAGGAGCAATGC-TTTTTTGGAAAAGAA
128 TGAATAGGAGAAATGCTTTTTTTGGAAAAGAA
* * * * ** * *
8803301 AAGCAACAATATCATGTATCCCAATGGTGAGAAACTATTTTCCTTTGGGCTTTGTGAAAATAACA
1 AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAAACA
* * * * * *
8803366 TATACTTTTATGATGGA-GAAGTTTGAATGAATTGAAGGGCCAACTCTGAAACCAAACAAAATGA
66 TATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAAGACCAACTTTGAAACCAAACAAAATGA
* * * * *
8803430 ATGGGATAAAAGCTTTTTTTGGTAAACAA
131 ATAGGAGAAATGCTTTTTTTGGAAAAGAA
* * * * *
8803459 AAGCAACAACATCTTGTATCGTAATGGTAACAAACTATTTTG-TTTGGTGC-TT-TG--TAAAA-
1 AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTT-GTACTTTATGAAAAAAAC
* * * * ****
8803518 ATA-ACATTTACAATAGG-GAAAGTTTGAACGAGTTGAAAGACCAACATTGAAACCAAATGGTAT
65 ATATACTTTTACGAT-GGAGGAAGTTTGAACGAGTTGAAAGACCAACTTTGAAACCAAACAAAAT
* * * *
8803581 GAGTGGGAGAAATGCTTTTATTGGAAAAAAA
129 GAATAGGAGAAATGCTTTTTTTGGAAAAGAA
* ** *
8803612 AAGCAACAATATCAAGTATCCTAATGGTAACAAACTATTTTGCTTCATACTTTATGAATAAAACA
1 AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAAACA
* * * * *
8803677 TGTACTTTTACGATGGAGGAAGTTTGAACAAATTCAAAGACTAACTTTGAAACCAAACAAAATGA
66 TATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAAGACCAACTTTGAAACCAAACAAAATGA
* *
8803742 ATAGGAGAAATGCATTTTTTTTTAGTAAAGAA
131 ATAGGAGAAATGC---TTTTTTTGGAAAAGAA
* * * ** * *
8803774 AAGCAATATTATCATGTTTCCTAATTCTAACAAACTATTTTGCTTTGCACTTTATGAAAAAAACT
1 AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAAACA
* ** * *
8803839 TGTACTTTTACGATGGAGGAAGTTTGAATAAGTTGAAGGACCAACTTTAAAACCAAACAAAATGA
66 TATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAAGACCAACTTTGAAACCAAACAAAATGA
* * * *** *
8803904 ATGGGGACAAAAGCTTTTTTTGGTGGACAA
131 AT-AGGAGAAATGCTTTTTTTGGAAAAGAA
* * * * *
8803934 AAACAATATTATCATGTATCCTAATAGTAACAAACTA---T--TTTG--C-TTATGAAAAAAACT
1 AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAAACA
** * * * * *
8803991 TACGCTTTTACAATGGAGGAAATTTGAACTAGTTAAAAGACCAACTTTGAAACTAAACAAAATGA
66 TATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAAGACCAACTTTGAAACCAAACAAAATGA
** *
8804056 A-AGGGAGAAATGCCATTTTTGGTAAATG-A
131 ATA-GGAGAAATGCTTTTTTTGG-AAAAGAA
* * * * * * *
8804085 AAGCAACAAAAT--TGTATATCTCAATGGTAACTAACTATTTTGCTTGGTATTTTGTTAAAAAAA
1 AAGCAACAATATCATGTAT-CCT-AATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAAA
* * * * * * * * *
8804148 CTTATAATTTTATGATGTATGAAGTTTGTACGAATTGAAAGACCAATTTTGAAATCAAACAAAAT
64 CATATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAAGACCAACTTTGAAACCAAACAAAAT
* * *
8804213 GAAT-GGTAGAAATG-ATTTTTTGGTAAA-CA
129 GAATAGG-AGAAATGCTTTTTTTGGAAAAGAA
* *
8804242 AACCAAACAATAT-AGTGTATCCTAATGTTAACAAACTATTTT
1 AAGC-AACAATATCA-TGTATCCTAATGGTAACAAACTATTTT
8804284 TCTCGATAAA
Statistics
Matches: 1120, Mismatches: 281, Indels: 124
0.73 0.18 0.08
Matches are distributed among these distances:
149 5 0.00
150 2 0.00
151 37 0.03
152 77 0.07
153 105 0.09
154 8 0.01
155 6 0.01
156 5 0.00
157 86 0.08
158 189 0.17
159 276 0.25
160 71 0.06
161 4 0.00
162 182 0.16
163 62 0.06
164 5 0.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.32
Consensus pattern (159 bp):
AAGCAACAATATCATGTATCCTAATGGTAACAAACTATTTTGCTTTGTACTTTATGAAAAAAACA
TATACTTTTACGATGGAGGAAGTTTGAACGAGTTGAAAGACCAACTTTGAAACCAAACAAAATGA
ATAGGAGAAATGCTTTTTTTGGAAAAGAA
Found at i:8804003 original size:473 final size:469
Alignment explanation
Indices: 8803213--8804233 Score: 1087
Period size: 473 Copynumber: 2.2 Consensus size: 469
8803203 GAACAAAGAG
* * * * *
8803213 TTTTATGATGGAGGAAATTTGAAGGAGTTAAAGGACCAACTTTTAAACCAAACAAAATGAAAAGG
1 TTTTATGATGGAGGAAGTTTGAACGAATTAAA-GACCAACTTTGAAACCAAACAAAATGAATAGG
* * * * *
8803278 AGCAATGC----TTTTTTGGAAAAGAAAAGCAACAATATCATGTATCCCAATGGTGAGAAACTAT
65 AGAAATGCATTTTTTTTTAGAAAAGAAAAGCAACAATATCATGTATCCCAATGCTAACAAACTAT
** * * *
8803339 TTTCCTTTGGGCTTTGTGAAAATAACATATACTTTTATGATGGAGAAGTTTGAATGAATTGAAGG
130 TTTCCTTTGCACTTTATGAAAAAAACATATACTTTTACGATGGAGAAGTTTGAATGAATTGAAGG
* * * *
8803404 GCCAACTCTGAAACCAAACAAAATGAATGGGATAAAAGCTTTTTTTGGTAAACAAAAGCAACAAC
195 ACCAACTCTAAAACCAAACAAAATGAATGGGACAAAAGCTTTTTTTGGTAAACAAAAACAACAAC
* * * * * **
8803469 ATCTTGTATCGTAATGGTAACAAACTATTTTGTTTGGTGCTTTGTAAAAATAACATTTACAATAG
260 ATCATGTATCCTAATAGTAACAAACTATTTTGCTTGATG---TAAAAAAATAACATTTACAATAG
* **** ** *
8803534 -GGAAAGTTTGAACGAGTTGAAAGACCAACATTGAAACCAAATGGTATGAGTGGGAGAAATG-CT
322 AGGAAA-TTTGAACGAGTTAAAAGACCAACATTGAAACCAAACAAAATGAAAGGGAGAAATGCCA
*
8803597 TTTATTGGAAAAAAAAAGCAACAATATCAAGTAT-CCT-AATGGTAACAAACTATTTTGCTTCAT
386 TTT-TTGGAAAAAAAAAGCAACAAAAT--AGTATACCTCAATGGTAACAAACTATTTTGCTTCAT
* * *
8803660 ACTTTATGAATAAAACATGTAC
448 ACTTTATGAAAAAAACATATAA
* * *
8803682 TTTTACGATGGAGGAAGTTTGAACAAATTCAAAGACTAACTTTGAAACCAAACAAAATGAATAGG
1 TTTTATGATGGAGGAAGTTTGAACGAATT-AAAGACCAACTTTGAAACCAAACAAAATGAATAGG
* * * * * *
8803747 AGAAATGCATTTTTTTTTAGTAAAGAAAAGCAATATTATCATGTTTCCTAATTCTAACAAACTAT
65 AGAAATGCATTTTTTTTTAGAAAAGAAAAGCAACAATATCATGTATCCCAATGCTAACAAACTAT
* * *
8803812 TTTGCTTTGCACTTTATGAAAAAAACTTGTACTTTTACGATGGAGGAAGTTTGAAT-AAGTTGAA
130 TTTCCTTTGCACTTTATGAAAAAAACATATACTTTTACGATGGA-GAAGTTTGAATGAA-TTGAA
* ** *
8803876 GGACCAACTTTAAAACCAAACAAAATGAATGGGGACAAAAGCTTTTTTTGGTGGACAAAAACAAT
193 GGACCAACTCTAAAACCAAACAAAATGAAT-GGGACAAAAGCTTTTTTTGGTAAACAAAAACAAC
** * *
8803941 ATTATCATGTATCCTAATAGTAACAAACTATTTTGCTT-ATG-AAAAAAACTTACGCTTTTACAA
257 AACATCATGTATCCTAATAGTAACAAACTATTTTGCTTGATGTAAAAAAA--TA-ACATTTACAA
* * * *
8804004 TGGAGGAAATTTGAACTAGTTAAAAGACCAACTTTGAAACTAAACAAAATGAAAGGGAGAAATGC
319 TAGAGGAAATTTGAACGAGTTAAAAGACCAACATTGAAACCAAACAAAATGAAAGGGAGAAATGC
* ** * * * **
8804069 CATTTTTGGTAAATGAAAGCAACAAAATTGTATATCTCAATGGTAACTAACTATTTTGCTTGGTA
384 CATTTTTGGAAAAAAAAAGCAACAAAATAGTATACCTCAATGGTAACAAACTATTTTGCTTCATA
* * * *
8804134 TTTTGTTAAAAAAACTTATAA
449 CTTTATGAAAAAAACATATAA
* * * * *
8804155 TTTTATGATGTATGAAGTTTGTACGAATTGAAAGACCAATTTTGAAATCAAACAAAATGAAT-GG
1 TTTTATGATGGAGGAAGTTTGAACGAATT-AAAGACCAACTTTGAAACCAAACAAAATGAATAGG
8804219 TAGAAATG-ATTTTTT
65 -AGAAATGCATTTTTT
8804234 GGTAAACAAA
Statistics
Matches: 453, Mismatches: 83, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
469 60 0.13
470 8 0.02
471 4 0.01
472 13 0.03
473 253 0.56
474 54 0.12
475 61 0.13
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (469 bp):
TTTTATGATGGAGGAAGTTTGAACGAATTAAAGACCAACTTTGAAACCAAACAAAATGAATAGGA
GAAATGCATTTTTTTTTAGAAAAGAAAAGCAACAATATCATGTATCCCAATGCTAACAAACTATT
TTCCTTTGCACTTTATGAAAAAAACATATACTTTTACGATGGAGAAGTTTGAATGAATTGAAGGA
CCAACTCTAAAACCAAACAAAATGAATGGGACAAAAGCTTTTTTTGGTAAACAAAAACAACAACA
TCATGTATCCTAATAGTAACAAACTATTTTGCTTGATGTAAAAAAATAACATTTACAATAGAGGA
AATTTGAACGAGTTAAAAGACCAACATTGAAACCAAACAAAATGAAAGGGAGAAATGCCATTTTT
GGAAAAAAAAAGCAACAAAATAGTATACCTCAATGGTAACAAACTATTTTGCTTCATACTTTATG
AAAAAAACATATAA
Found at i:8804318 original size:158 final size:158
Alignment explanation
Indices: 8804026--8804321 Score: 357
Period size: 158 Copynumber: 1.9 Consensus size: 158
8804016 GAACTAGTTA
* *
8804026 AAAGACCAACTTTGAAACTAAACAAAATGAAAGGGAGAAATGCCATTTTTGGTAAATGAAAGCAA
1 AAAGACCAACTTTGAAACTAAACAAAATGAAAGGGAGAAATG-CATTTTTGGTAAATCAAACCAA
* * * * ** **
8804091 CAAAATTGTATATCTCAATGGTAACTAACTATTTTGCTTGGTATTTTGTTAAAAAAACTTATAAT
65 CAAAATAGTATATCTCAATGGTAACAAACTATTTTGCTCGATAAATTGGGAAAAAAACTTATAAT
8804156 TTTATGATGTATGAAGTTTGTACGAATTG
130 TTTATGATGTATGAAGTTTGTACGAATTG
* * *
8804185 AAAGACCAATTTTGAAA-TCAAACAAAATGAATGGTAGAAATG-ATTTTTTGGTAAA-CAAACCA
1 AAAGACCAACTTTGAAACT-AAACAAAATGAAAGGGAGAAATGCA-TTTTTGGTAAATCAAACC-
* * * *
8804247 AACAATATAGTGTATC-CTAATGTTAACAAACTATTTTTCTCGATAAATTGGGAAAAAAACTTAT
63 AACAAAATAGTATATCTC-AATGGTAACAAACTATTTTGCTCGATAAATTGGGAAAAAAACTTAT
*
8804311 ACTTTTATGAT
127 AATTTTATGAT
8804322 TGATCCTGGA
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
157 6 0.05
158 72 0.63
159 37 0.32
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.33
Consensus pattern (158 bp):
AAAGACCAACTTTGAAACTAAACAAAATGAAAGGGAGAAATGCATTTTTGGTAAATCAAACCAAC
AAAATAGTATATCTCAATGGTAACAAACTATTTTGCTCGATAAATTGGGAAAAAAACTTATAATT
TTATGATGTATGAAGTTTGTACGAATTG
Found at i:8817940 original size:41 final size:39
Alignment explanation
Indices: 8817894--8818029 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
8817884 CCTCTCAAAT
8817894 TTTTAATATTTAAAGTTTTGTTGCCTCTAGTCAGAAGAGCC
1 TTTTAA-ATTTAAAG-TTTGTTGCCTCTAGTCAGAAGAGCC
* * * *
8817935 TTTTAACATTTAAAGTTTGTTGCCTTTGGTTAGAGGAGCC
1 TTTTAA-ATTTAAAGTTTGTTGCCTCTAGTCAGAAGAGCC
* * * * *
8817975 GTTTGAATTTAAAGTTCGTTGCCT-TTGATCA-AAGAAGTC
1 TTTTAAATTTAAAGTTTGTTGCCTCTAG-TCAGAAG-AGCC
*
8818014 TTTTAAATTTAGAGTT
1 TTTTAAATTTAAAGTT
8818030 CCATTGCCTT
Statistics
Matches: 78, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
38 4 0.05
39 35 0.45
40 25 0.32
41 14 0.18
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (39 bp):
TTTTAAATTTAAAGTTTGTTGCCTCTAGTCAGAAGAGCC
Found at i:8817974 original size:40 final size:39
Alignment explanation
Indices: 8817894--8818060 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
8817884 CCTCTCAAAT
* *
8817894 TTTTAATATTTAAAGTTTTGTTGCCTCTAGTCAGAAGAGCC
1 TTTTAA-ATTTAAAG-TTTGTTGCCTTTGGTCAGAAGAGCC
* *
8817935 TTTTAACATTTAAAGTTTGTTGCCTTTGGTTAGAGGAGCC
1 TTTTAA-ATTTAAAGTTTGTTGCCTTTGGTCAGAAGAGCC
* * * * *
8817975 GTTTGAATTTAAAGTTCGTTGCCTTTGATCA-AAGAAGTC
1 TTTTAAATTTAAAGTTTGTTGCCTTTGGTCAGAAG-AGCC
* ** * *
8818014 TTTTAAATTTAGAGTTCCATTGCCTTTGATCAAAAGAGCC
1 TTTTAAATTTAAAGTT-TGTTGCCTTTGGTCAGAAGAGCC
*
8818054 ATTTAAA
1 TTTTAAA
8818061 CTTTCATAGC
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 2 0.02
39 38 0.36
40 48 0.46
41 17 0.16
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (39 bp):
TTTTAAATTTAAAGTTTGTTGCCTTTGGTCAGAAGAGCC
Found at i:8818412 original size:118 final size:118
Alignment explanation
Indices: 8818310--8818589 Score: 305
Period size: 118 Copynumber: 2.4 Consensus size: 118
8818300 TAAAGTTTTG
8818310 TTACCTTTGGTCA-AAGAAGCCTTTTGAATTTAAAG-TTCATTGACTCTAGTCAGAGGAGCCTTT
1 TTACCTTTGGTCAGAA-AAGCCTTTTGAATTTAAAGTTTCATTGACTCTAGT-AGAGGAGCCTTT
* ** * * *
8818373 TCACATTTAAAGTTTGTTACCTTTGGTTAGA-GAAGCTTTTTGAATTTAAAGTTCA
64 TAACATTTAAAGTTCATTACCTCTGGTTAGATGAA-CCTTTTGAAATTAAAGTTCA
* ** * * * *
8818428 TTACTTTTGGTCAGAAAAGCCTTTTGAATTTAAAGTTTTGTTGCCTCTGGTTGAGGAGTCTTTTA
1 TTACCTTTGGTCAGAAAAGCCTTTTGAATTTAAAGTTTCATTGACTCTAGTAGAGGAGCCTTTTA
* *
8818493 ACATTTAAAGTTCATTGCCTCTGGTTAGATGAACCTTTTGAATTTAAAGTTCA
66 ACATTTAAAGTTCATTACCTCTGGTTAGATGAACCTTTTGAAATTAAAGTTCA
* * * ** * *
8818546 TTACCTCTAGTCGGAGGAGTCTTTTAATATTTAAAGTTTCATTG
1 TTACCTTTGGTCAGAAAAGCCTTTTGA-ATTTAAAGTTTCATTG
8818590 CTTCTGGTTA
Statistics
Matches: 135, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
118 105 0.78
119 30 0.22
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.41
Consensus pattern (118 bp):
TTACCTTTGGTCAGAAAAGCCTTTTGAATTTAAAGTTTCATTGACTCTAGTAGAGGAGCCTTTTA
ACATTTAAAGTTCATTACCTCTGGTTAGATGAACCTTTTGAAATTAAAGTTCA
Found at i:8818491 original size:39 final size:40
Alignment explanation
Indices: 8818218--8818634 Score: 276
Period size: 39 Copynumber: 10.5 Consensus size: 40
8818208 TAAAGAAGTC
* * * * *
8818218 ATTTAAAAG-TTCATTGCATCTAGTTAAAAGAGCATTTTGA
1 ATTT-AAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* * * * *
8818258 ATTTAGAG-TTCATTGCCTCTAGTCAAAAGAGCCTTTT-A
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* ** * * * * *
8818296 ACATTAAAGTTTTGTTACCTTTGGTCAAAGAAGCCTTTTGA
1 A-TTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* * * *
8818337 ATTTAAAG-TTCATTGACTCTAGTCAGAGGAGCCTTTTCA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* * * * *
8818376 CATTTAAAGTTT-GTTACCTTTGGTTAGAGAAGCTTTTTGA
1 -ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* * * * **
8818416 ATTTAAAG-TTCATTACTTTTGGTCAGAAAAGCCTTTTGA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
** * *
8818455 ATTTAAAGTTTTGTTGCCTCTGGTT-GAGGAGTCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* *
8818494 CATTTAAAG-TTCATTGCCTCTGGTTAGATGAACCTTTTGA
1 -ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* * ** * *
8818534 ATTTAAAG-TTCATTACCTCTAGTCGGAGGAGTCTTTTAA
1 ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
* * * *
8818573 TATTTAAAGTTTCATTGCTTCTGGTTAAAAGAGCCTTCTGA
1 -ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
*
8818614 ATTTAAAGTTTCATAGCCTCT
1 ATTTAAAGTTTCATTGCCTCT
8818635 ATTTAGTGGA
Statistics
Matches: 293, Mismatches: 73, Indels: 22
0.76 0.19 0.06
Matches are distributed among these distances:
38 4 0.01
39 150 0.51
40 114 0.39
41 25 0.09
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.40
Consensus pattern (40 bp):
ATTTAAAGTTTCATTGCCTCTGGTTAGAGGAGCCTTTTGA
Found at i:8818530 original size:79 final size:79
Alignment explanation
Indices: 8818252--8818624 Score: 335
Period size: 79 Copynumber: 4.7 Consensus size: 79
8818242 TAAAAGAGCA
* * * * *
8818252 TTTTGAATTTAGAGTTCATTGCCTCTAGTCAAAAGAGCCTTTT-AACATTAAAGTTTTGTTACCT
1 TTTTAAATTTAAAGTTCATTGCCTCTGGTCAGAAGAGCCTTTTGAA-TTTAAAGTTTTGTTACCT
* ** *
8818316 TTGGTCAAAGAAGCC
65 CTGGTCTGAGAAGTC
* * * * *
8818331 TTTTGAATTTAAAGTTCATTGACTCTAGTCAGAGGAGCCTTTTCACATTTAAAG-TTTGTTACCT
1 TTTTAAATTTAAAGTTCATTGCCTCTGGTCAGAAGAGCCTTTTGA-ATTTAAAGTTTTGTTACCT
*
8818395 TTGGT-TAGAGAAG-C
65 CTGGTCT-GAGAAGTC
* * * * * *
8818409 TTTTTGAATTTAAAGTTCATTACTTTTGGTCAGAAAAGCCTTTTGAATTTAAAGTTTTGTTGCCT
1 -TTTTAAATTTAAAGTTCATTGCCTCTGGTCAGAAGAGCCTTTTGAATTTAAAGTTTTGTTACCT
*
8818474 CTGGT-TGAGGAGTC
65 CTGGTCTGAGAAGTC
* * * **
8818488 TTTTAACATTTAAAGTTCATTGCCTCTGGTTAGATGAACCTTTTGAATTTAAAG-TTCATTACCT
1 TTTTAA-ATTTAAAGTTCATTGCCTCTGGTCAGAAGAGCCTTTTGAATTTAAAGTTTTGTTACCT
* * *
8818552 CTAGTCGGAGGAGTC
65 CTGGTCTGAGAAGTC
* * * *
8818567 TTTTAATATTTAAAGTTTCATTGCTTCTGGTTAAAAGAGCCTTCTGAATTTAAAGTTT
1 TTTTAA-ATTTAAAG-TTCATTGCCTCTGGTCAGAAGAGCCTTTTGAATTTAAAGTTT
8818625 CATAGCCTCT
Statistics
Matches: 247, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
78 30 0.12
79 173 0.70
80 41 0.17
81 3 0.01
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (79 bp):
TTTTAAATTTAAAGTTCATTGCCTCTGGTCAGAAGAGCCTTTTGAATTTAAAGTTTTGTTACCTC
TGGTCTGAGAAGTC
Found at i:8819546 original size:16 final size:15
Alignment explanation
Indices: 8819515--8819544 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8819505 AAGAGGCTCT
*
8819515 TAGGGTAAAGAAAAA
1 TAGGGGAAAGAAAAA
8819530 TAGGGGAAAGAAAAA
1 TAGGGGAAAGAAAAA
8819545 ATTAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.30, T:0.10
Consensus pattern (15 bp):
TAGGGGAAAGAAAAA
Found at i:8819731 original size:21 final size:19
Alignment explanation
Indices: 8819700--8819747 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
8819690 TTTCTTTTTC
* *
8819700 TTTTCTATTTTGATTTTGAT
1 TTTTTTATTTTG-TGTTGAT
8819720 TTTATTTATTTTGTGTTGAT
1 TTT-TTTATTTTGTGTTGAT
8819740 TTTTTTAT
1 TTTTTTAT
8819748 GATATTATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.20
20 12 0.48
21 8 0.32
ACGTcount: A:0.15, C:0.02, G:0.10, T:0.73
Consensus pattern (19 bp):
TTTTTTATTTTGTGTTGAT
Found at i:8819828 original size:12 final size:12
Alignment explanation
Indices: 8819805--8819838 Score: 50
Period size: 12 Copynumber: 2.7 Consensus size: 12
8819795 ATTATTTTAG
8819805 AAATAGAAAAATA
1 AAATA-AAAAATA
8819818 AAATAAAAAATA
1 AAATAAAAAATA
8819830 AAACTAAAA
1 AAA-TAAAA
8819839 TAAAATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:8822701 original size:18 final size:20
Alignment explanation
Indices: 8822666--8822702 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8822656 ATAAGACTTT
*
8822666 AATATTTATATGTAGGAAAG
1 AATATATATATGTAGGAAAG
8822686 AATATATAT-TGT-GGAAA
1 AATATATATATGTAGGAAA
8822703 AACTAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 3 0.19
20 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (20 bp):
AATATATATATGTAGGAAAG
Found at i:8822924 original size:22 final size:22
Alignment explanation
Indices: 8822888--8822930 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8822878 TTTTTTGTCT
* *
8822888 TTAATTTTAGGGATACAAATAC
1 TTAATTCTAGAGATACAAATAC
8822910 TTAATTCTAGAGATACAAATA
1 TTAATTCTAGAGATACAAATA
8822931 TAAATATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (22 bp):
TTAATTCTAGAGATACAAATAC
Found at i:8826901 original size:22 final size:22
Alignment explanation
Indices: 8826874--8826917 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8826864 AATTTTTATC
*
8826874 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
8826896 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
8826918 TAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:8826929 original size:22 final size:22
Alignment explanation
Indices: 8826877--8826929 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
8826867 TTTTATCCTT
* * *
8826877 AATTCTAGGGATACAAATACTT
1 AATTATAGAGATACAAATACTA
*
8826899 AATTCTAGAGATACAAATA-TA
1 AATTATAGAGATACAAATACTA
8826920 AATATATAGA
1 AAT-TATAGA
8826930 TTATAAGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.30
Consensus pattern (22 bp):
AATTATAGAGATACAAATACTA
Found at i:8827017 original size:2 final size:2
Alignment explanation
Indices: 8827012--8827043 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8827002 CGATCAGAGT
8827012 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8827044 ACGATCAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8828835 original size:42 final size:42
Alignment explanation
Indices: 8828787--8828868 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
8828777 TAAAAGTAAT
* * *
8828787 TTTAAATGAAGGTCAATACAAGCTTTCATTAAAAATAAAAAC
1 TTTAAATAAAGGTCAATAAAAGCTTTCACTAAAAATAAAAAC
* * *
8828829 TTTAAATAAAGGTTAATAAAAGTTTTCACTAAAATTAAAA
1 TTTAAATAAAGGTCAATAAAAGCTTTCACTAAAAATAAAA
8828869 GATATAATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.32
Consensus pattern (42 bp):
TTTAAATAAAGGTCAATAAAAGCTTTCACTAAAAATAAAAAC
Found at i:8831360 original size:2 final size:2
Alignment explanation
Indices: 8831353--8831391 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8831343 GACCAGGCTT
*
8831353 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8831392 CAGGAAAACA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8840134 original size:17 final size:17
Alignment explanation
Indices: 8840071--8840134 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
8840061 GGATAACTTA
**
8840071 AATAATATTAATTGCCT
1 AATAATATTAATTGAAT
*
8840088 AATAATATTAAATTAAAGT
1 AATAATATT-AATTGAA-T
* * *
8840107 AATTATTTTAATTGGAT
1 AATAATATTAATTGAAT
8840124 AATAATATTAA
1 AATAATATTAA
8840135 ATTTTAAACA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
17 19 0.53
18 9 0.25
19 8 0.22
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
AATAATATTAATTGAAT
Found at i:8850966 original size:63 final size:63
Alignment explanation
Indices: 8850898--8851070 Score: 194
Period size: 62 Copynumber: 2.7 Consensus size: 63
8850888 ATCATAAGCA
* *
8850898 TTTTTGACTAAAAACGCCTTCATTAATCCATTCAAAATTTTTAAAAAA-ATTTATTGAAGGCAT
1 TTTTTGACTAAAAACGCCTTCAATAATCCCTTCAAAATTTTTAAAAAAGATTT-TTGAAGGCAT
* * *
8850961 TTTTTG-C-ATAATACGCTTTCAATAATCCCCTT--AAATTTTAACAAAAAGATTTTTGAAGGCA
1 TTTTTGACTA-AAAACGCCTTCAATAAT-CCCTTCAAAATTTTTA-AAAAAGATTTTTGAAGGCA
8851022 T
63 T
*
8851023 TTTTTGACTAAAAACACCTTCAATAATCTCCTCTTCAAAATTTTTAAA
1 TTTTTGACTAAAAACGCCTTCAATAA--TCC-CTTCAAAATTTTTAAA
8851071 GGAAATTATT
Statistics
Matches: 90, Mismatches: 9, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
61 9 0.10
62 36 0.40
63 28 0.31
64 3 0.03
65 4 0.04
66 2 0.02
67 8 0.09
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.39
Consensus pattern (63 bp):
TTTTTGACTAAAAACGCCTTCAATAATCCCTTCAAAATTTTTAAAAAAGATTTTTGAAGGCAT
Found at i:8851627 original size:28 final size:28
Alignment explanation
Indices: 8851556--8851627 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
8851546 TTAAATATTA
* *
8851556 TGGTTTGTTGAATGGAATTATATGATAT
1 TGGTTTGCTGAATGGTATTATATGATAT
* *
8851584 TGATTTGCTGAATGGTATTGTATGATAT
1 TGGTTTGCTGAATGGTATTATATGATAT
8851612 TGGTTTGCTGAATGGT
1 TGGTTTGCTGAATGGT
8851628 TTGCTAAATG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.03, G:0.28, T:0.46
Consensus pattern (28 bp):
TGGTTTGCTGAATGGTATTATATGATAT
Found at i:8851629 original size:12 final size:12
Alignment explanation
Indices: 8851587--8851726 Score: 84
Period size: 12 Copynumber: 11.1 Consensus size: 12
8851577 ATGATATTGA
8851587 TTTGCTGAATGG
1 TTTGCTGAATGG
*
8851599 TATTGTATGATATTGG
1 T-TTG-CTGA-A-TGG
8851615 TTTGCTGAATGG
1 TTTGCTGAATGG
*
8851627 TTTGCTAAATGG
1 TTTGCTGAATGG
**
8851639 TATTTTTGAATGG
1 T-TTGCTGAATGG
*
8851652 TTTGCTAAATGG
1 TTTGCTGAATGG
**
8851664 TGTTTTTGAATGG
1 T-TTGCTGAATGG
*
8851677 TTTGTTGAATGG
1 TTTGCTGAATGG
* **
8851689 TGTTTCTGAA-CA
1 T-TTGCTGAATGG
8851701 TATTGCTGAATGG
1 T-TTGCTGAATGG
**
8851714 TTTATTGAATGG
1 TTTGCTGAATGG
8851726 T
1 T
8851727 ATTTCTATAG
Statistics
Matches: 97, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
12 54 0.56
13 29 0.30
14 6 0.06
15 4 0.04
16 4 0.04
ACGTcount: A:0.21, C:0.05, G:0.27, T:0.46
Consensus pattern (12 bp):
TTTGCTGAATGG
Found at i:8851631 original size:40 final size:38
Alignment explanation
Indices: 8851587--8851689 Score: 113
Period size: 37 Copynumber: 2.7 Consensus size: 38
8851577 ATGATATTGA
*
8851587 TTTGCTGAATGGTATTGTATGATATTGGTTTGCTGAATGG
1 TTTGCTGAATGGTATTGTATGA-A-TGGTTTGCTAAATGG
* *
8851627 TTTGCTAAATGGTATT-TTTGAATGGTTTGCTAAATGG
1 TTTGCTGAATGGTATTGTATGAATGGTTTGCTAAATGG
**
8851664 TGTTTTTGAATGGT-TTGT-TGAATGGT
1 T-TTGCTGAATGGTATTGTATGAATGGT
8851690 GTTTCTGAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
37 25 0.45
38 11 0.20
39 4 0.07
40 15 0.27
ACGTcount: A:0.20, C:0.04, G:0.28, T:0.48
Consensus pattern (38 bp):
TTTGCTGAATGGTATTGTATGAATGGTTTGCTAAATGG
Done.