Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 50 of 121
Found at i:8851654 original size:25 final size:25
Alignment explanation
Indices: 8851620--8851698 Score: 122
Period size: 25 Copynumber: 3.2 Consensus size: 25
8851610 ATTGGTTTGC
*
8851620 TGAATGGTTTGCTAAATGGTATTTT
1 TGAATGGTTTGCTAAATGGTGTTTT
8851645 TGAATGGTTTGCTAAATGGTGTTTT
1 TGAATGGTTTGCTAAATGGTGTTTT
* * *
8851670 TGAATGGTTTGTTGAATGGTGTTTC
1 TGAATGGTTTGCTAAATGGTGTTTT
8851695 TGAA
1 TGAA
8851699 CATATTGCTG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.22, C:0.04, G:0.28, T:0.47
Consensus pattern (25 bp):
TGAATGGTTTGCTAAATGGTGTTTT
Found at i:8851729 original size:25 final size:25
Alignment explanation
Indices: 8851620--8851726 Score: 119
Period size: 25 Copynumber: 4.3 Consensus size: 25
8851610 ATTGGTTTGC
* *
8851620 TGAATGGTTTGCTAAATGGTATTTT
1 TGAATGGTTTGCTGAATGGTGTTTT
*
8851645 TGAATGGTTTGCTAAATGGTGTTTT
1 TGAATGGTTTGCTGAATGGTGTTTT
* *
8851670 TGAATGGTTTGTTGAATGGTGTTTC
1 TGAATGGTTTGCTGAATGGTGTTTT
** *
8851695 TGAA-CATATTGCTGAATGGT-TTAT
1 TGAATGGT-TTGCTGAATGGTGTTTT
8851719 TGAATGGT
1 TGAATGGT
8851727 ATTTCTATAG
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
24 7 0.10
25 62 0.90
ACGTcount: A:0.22, C:0.05, G:0.27, T:0.46
Consensus pattern (25 bp):
TGAATGGTTTGCTGAATGGTGTTTT
Found at i:8854873 original size:35 final size:35
Alignment explanation
Indices: 8854770--8854874 Score: 156
Period size: 36 Copynumber: 3.0 Consensus size: 35
8854760 TATATAAACC
* * *
8854770 AAATGTTTTCTGGGTATAAATCTACAATTGAATTT
1 AAATGTTTTTTGGGCATAAATCTACAATTGACTTT
8854805 AAATGTTTTTCTGGGCATAAATCTACAATTGACTTT
1 AAATGTTTTT-TGGGCATAAATCTACAATTGACTTT
* *
8854841 AAATGTTTTTTGGGCATAAAACTACAACTGACTT
1 AAATGTTTTTTGGGCATAAATCTACAATTGACTT
8854875 CACATATATA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 31 0.48
36 33 0.52
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (35 bp):
AAATGTTTTTTGGGCATAAATCTACAATTGACTTT
Found at i:8874909 original size:45 final size:45
Alignment explanation
Indices: 8874820--8874927 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
8874810 ACATGCACTA
* * * *
8874820 CCTTGACCACCATCAGCACATGTTGGCCTTTGGTCTTAGTACATG
1 CCTTAACCACCATCAGCACATGTTGGCCCTTGGTCTGAGCACATG
* *
8874865 CCTTAACCACCATTAGCACATGTTTGCCCTTGGTCTCGA-CACATG
1 CCTTAACCACCATCAGCACATGTTGGCCCTTGGTCT-GAGCACATG
* **
8874910 CGTCGACCACCATCAGCA
1 CCTTAACCACCATCAGCA
8874928 AATGCTAGGC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 51 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (45 bp):
CCTTAACCACCATCAGCACATGTTGGCCCTTGGTCTGAGCACATG
Found at i:8877903 original size:18 final size:19
Alignment explanation
Indices: 8877861--8877902 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8877851 CTCATTTTCT
* *
8877861 ATTTTTCATGATTTTTAGA
1 ATTTTTCATGAGTTTGAGA
8877880 ATTTTTCATG-GTTTGAG-
1 ATTTTTCATGAGTTTGAGA
8877897 ATTTTT
1 ATTTTT
8877903 TGAAATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 5 0.24
19 10 0.48
ACGTcount: A:0.21, C:0.05, G:0.14, T:0.60
Consensus pattern (19 bp):
ATTTTTCATGAGTTTGAGA
Found at i:8912003 original size:23 final size:23
Alignment explanation
Indices: 8911972--8912019 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
8911962 ATTAGCACAA
* *
8911972 GCTAGAGCATGGTGTAGGCAAAT
1 GCTAAAGCATGGTATAGGCAAAT
*
8911995 GCTAAAGCATGGTATAGGCACAT
1 GCTAAAGCATGGTATAGGCAAAT
8912018 GC
1 GC
8912020 CTTGACCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (23 bp):
GCTAAAGCATGGTATAGGCAAAT
Found at i:8912070 original size:45 final size:45
Alignment explanation
Indices: 8912019--8912144 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 45
8912009 TAGGCACATG
* * *
8912019 CCTTGACCATTGTTGGCACAAGCTGACCTTTGGTAC-GAGCACCTA
1 CCTTGACCATTATCGACACAAGCTGACCTTTGGTACGGA-CACCTA
* * * *
8912064 CCTTGACCACTATCGACACAAGCTGGCCTTTGGTATGGACACTTA
1 CCTTGACCATTATCGACACAAGCTGACCTTTGGTACGGACACCTA
* * * *
8912109 CCTTGACCATCATCGACACATGTTGGCCTTTGGTAC
1 CCTTGACCATTATCGACACAAGCTGACCTTTGGTAC
8912145 AGGCACATGC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 66 0.97
46 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
CCTTGACCATTATCGACACAAGCTGACCTTTGGTACGGACACCTA
Found at i:8919907 original size:224 final size:223
Alignment explanation
Indices: 8919640--8920085 Score: 624
Period size: 224 Copynumber: 2.0 Consensus size: 223
8919630 ACCATTAGTA
*
8919640 GATGCTAGCCCATTGTTGCCAAATGTTGACTAAGGCATCATCATTAAATAATGGCCCATTGGTGT
1 GATGCTAGCCCATTGTTGCCAAATGTTGACTAAGACATCATCATTAAATAATGGCCCATTGGTGT
* *
8919705 AAGATGTTACGTATGACACCATGCTAGATGCTTGCACTTGGTGTGGGCAATTACCTTGACCAT-T
66 AAGATGTTACCTATGACACCATGCTAGATGCTTGCACTTGGTGTGGGCAAATACCTTGACCATAT
* * * * * ** * *
8919769 GTCGACATAAGCAAGCCTTTGGTGTGGGTTGTTACCTTAGACAACTCTTTAGTAGATGCTGGCAC
131 -TAG-CATAAACAAGCCCTTGGTATGGGTTGTTACCTCAGACAACTCTTTAACAAATGATGGCAC
*
8919834 TTGGTGTAGCATGTGTACTATGACCTTCCC
194 TTAGTGTAGCATGTGTACTATGACCTTCCC
* * * *
8919864 GATGCTAGCCCATTGTTGCCTAATGTTGACTAAGATATCATCATTAGATAATGGCCCTTTGGTGT
1 GATGCTAGCCCATTGTTGCCAAATGTTGACTAAGACATCATCATTAAATAATGGCCCATTGGTGT
* * ** *
8919929 AAGATGTTGCCTCTGACACCATGCTAGATGCTTGCACTTGGTGTTTGTAAATACCTTGACCATCA
66 AAGATGTTACCTATGACACCATGCTAGATGCTTGCACTTGGTGTGGGCAAATACCTTGACCAT-A
**
8919994 TTAGCATAAACGGGCCCTTGGTATGGGTTGTTACCTCAGACAACTCTTTAACAAATGATGGCACT
130 TTAGCATAAACAAGCCCTTGGTATGGGTTGTTACCTCAGACAACTCTTTAACAAATGATGGCACT
* *
8920059 TAGTGTAGCATGTGTATTGTGACCTTC
195 TAGTGTAGCATGTGTACTATGACCTTC
8920086 TCGTATAAGG
Statistics
Matches: 194, Mismatches: 26, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
224 191 0.98
225 2 0.01
226 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (223 bp):
GATGCTAGCCCATTGTTGCCAAATGTTGACTAAGACATCATCATTAAATAATGGCCCATTGGTGT
AAGATGTTACCTATGACACCATGCTAGATGCTTGCACTTGGTGTGGGCAAATACCTTGACCATAT
TAGCATAAACAAGCCCTTGGTATGGGTTGTTACCTCAGACAACTCTTTAACAAATGATGGCACTT
AGTGTAGCATGTGTACTATGACCTTCCC
Found at i:8923216 original size:45 final size:45
Alignment explanation
Indices: 8923118--8923234 Score: 108
Period size: 45 Copynumber: 2.6 Consensus size: 45
8923108 TACATGCCTC
* * * * *
8923118 AACCATCATCAACATAAGCTGGCCTTTGGTATGGGCACCTACCTT
1 AACCACCATCAGCATAAGCTAGCCTTTGGTATAGACACCTACCTT
* ** ** *
8923163 GACCACCATTGGCATAAGCTAGCCTTTGGTATAGACATTTGCCTT
1 AACCACCATCAGCATAAGCTAGCCTTTGGTATAGACACCTACCTT
* * *
8923208 AACTACCATCAGCACATGCTAGCCTTT
1 AACCACCATCAGCATAAGCTAGCCTTT
8923235 ATTGAAGGCA
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (45 bp):
AACCACCATCAGCATAAGCTAGCCTTTGGTATAGACACCTACCTT
Found at i:8930741 original size:29 final size:29
Alignment explanation
Indices: 8930696--8930757 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
8930686 CAGCAGGATA
* *
8930696 GGTGATCAGAGGGGTGGAGGGTAGGGTAT
1 GGTGATCAGAGGAGTGGAGGGTAGGGCAT
*
8930725 GGTGATCAGAGGAGTGGGGGGTAGGGCAT
1 GGTGATCAGAGGAGTGGAGGGTAGGGCAT
8930754 GGTG
1 GGTG
8930758 GCAGTGATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.19, C:0.05, G:0.56, T:0.19
Consensus pattern (29 bp):
GGTGATCAGAGGAGTGGAGGGTAGGGCAT
Found at i:8930831 original size:19 final size:18
Alignment explanation
Indices: 8930781--8930831 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 18
8930771 TGACTTTTTT
8930781 TTTTTTTTATGTTTTTGGTA
1 TTTTTTTTA--TTTTTGGTA
*
8930801 TTTTGTATTATTTTTGGTA
1 TTTT-TTTTATTTTTGGTA
8930820 TTTTTTTGTATT
1 TTTTTTT-TATT
8930832 CTGTATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.07
19 17 0.63
20 4 0.15
21 4 0.15
ACGTcount: A:0.12, C:0.00, G:0.14, T:0.75
Consensus pattern (18 bp):
TTTTTTTTATTTTTGGTA
Found at i:8931213 original size:50 final size:49
Alignment explanation
Indices: 8931136--8931517 Score: 294
Period size: 50 Copynumber: 7.8 Consensus size: 49
8931126 AAAATCTGAA
* * * *
8931136 AAAAGTCTCCTCTTAGCAAAGGCTCAACAA-TTGTAAAAATTTTATCTTG
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTT-TAAAAATTTTATCTTG
* *
8931185 AAAATGGCTCATCTCAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTG
1 AAAA-GGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTTATCTTG
* * * **
8931235 AAAA-GCTCCTCTTAGCAGACGCTCAATGACTTTAAAAA-TTTATCTTG
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTTATCTTG
* * * * * * **
8931282 AAAAAGCTCTTCTCAGTAGAGGCTCAACAACTTTTGAGAATTTAAAATCTAA
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAAC-TTTAAAAATTT--TATCTTG
* *
8931334 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAA-TTCA-CTGG
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTTATCTTG
* ** * *
8931381 AAAAAGCTTC-TCTCAATAGAGGTTCAACAACTTTAAAAATTCTCATCTTAG
1 AAAAGGC-TCATCTCAGCAGAGGCTCAACAACTTTAAAAATT-TTATCTT-G
** * * * * *
8931432 AAAA-GCTCCCCTCAACAGAGACTTAACAACTTTAAAAATCTCATCTTGG
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTTATCTT-G
** * *
8931481 AAAA-GCTCCCCTCAGTAGAGGCTCAATAACTTTAAAA
1 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAA
8931518 TCTTATATCT
Statistics
Matches: 273, Mismatches: 47, Indels: 26
0.79 0.14 0.08
Matches are distributed among these distances:
47 46 0.17
48 52 0.19
49 55 0.20
50 75 0.27
51 13 0.05
52 32 0.12
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (49 bp):
AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTTATCTTG
Found at i:8931401 original size:99 final size:97
Alignment explanation
Indices: 8931090--8931517 Score: 332
Period size: 99 Copynumber: 4.3 Consensus size: 97
8931080 TAAAAAATAT
* * ** * * * *
8931090 TTCTCTCACTTGAGGCTCGGCAACTTTTGAAATTTTAAAATCTGAAAAAAGTCTCCTCTTAGCAA
1 TTCTCTCAGTAGAGGCTCAACAACTTTTAAAAATTT--AATCT-AAAAAAG-CTCCTCTCAGCAG
* * *
8931155 AGGCTCAACAA-TTGTAAAAATTTTATCTTGAAAATGGC
62 AGGCTCAACAACTT-TAAAAA-TTCATCTGGAAAA-AGC
* * * ** * *
8931193 -TCATCTCAGCAAAGGCTCAACAAC-TTTAAAAATTTCATCTTGAAAAGCTCCTCTTAGCAGACG
1 TTC-TCTCAGTAGAGGCTCAACAACTTTTAAAAATTTAATCTAAAAAAGCTCCTCTCAGCAGAGG
** * *
8931256 CTCAATGACTTTAAAAATTTATCTTGAAAAAGC
65 CTCAACAACTTTAAAAATTCATCTGGAAAAAGC
* * *
8931289 -TCTTCTCAGTAGAGGCTCAACAACTTTTGAGAATTTAAAATCTAAAAAAGGCTCATCTCAGCAG
1 TTC-TCTCAGTAGAGGCTCAACAACTTTTAAAAATTT--AATCTAAAAAA-GCTCCTCTCAGCAG
8931353 AGGCTCAACAACTTTAAAAATTCA-CTGGAAAAAGC
62 AGGCTCAACAACTTTAAAAATTCATCTGGAAAAAGC
* * * * * *
8931388 TTCTCTCAATAGAGGTTCAACAAC-TTTAAAAATTCTCATCTTAGAAAAGCTCCCCTCAACAGAG
1 TTCTCTCAGTAGAGGCTCAACAACTTTTAAAAATT-TAATC-TAAAAAAGCTCCTCTCAGCAGAG
* *
8931452 ACTTAACAACTTTAAAAATCTCATCTTGG-AAAAGC
64 GCTCAACAACTTTAAAAAT-TCATC-TGGAAAAAGC
* * *
8931487 TCCCCTCAGTAGAGGCTCAATAAC-TTTAAAA
1 TTCTCTCAGTAGAGGCTCAACAACTTTTAAAA
8931518 TCTTATATCT
Statistics
Matches: 266, Mismatches: 47, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
96 23 0.09
97 55 0.21
98 43 0.16
99 78 0.29
100 41 0.15
102 11 0.04
103 15 0.06
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (97 bp):
TTCTCTCAGTAGAGGCTCAACAACTTTTAAAAATTTAATCTAAAAAAGCTCCTCTCAGCAGAGGC
TCAACAACTTTAAAAATTCATCTGGAAAAAGC
Found at i:8931487 original size:198 final size:199
Alignment explanation
Indices: 8931101--8931513 Score: 491
Period size: 198 Copynumber: 2.1 Consensus size: 199
8931091 TCTCTCACTT
** * * *
8931101 GAGGCTCGGCAACTTTTGAAATTTTAAAATCTGAAAAAAGTCTCCTCTTAGCAAAGGCTCAACAA
1 GAGGCTCAACAACTTTTGAAATTTTAAAATCTGAAAAAAGGCTCATCTCAGCAAAGGCTCAACAA
* * * *
8931166 TTGTAAAAATTTTATCTTGAAAATGGCTCATCTCAGCAAAGGCTCAACAACTTTAAAAATTTCAT
66 TTGTAAAAATTTCATCTGGAAAATAGCTCATCTCAACAAAGGCTCAACAACTTTAAAAATTTCAT
* * * ** * **
8931231 CTTGAAAAGCTCCTCTTAGCAGACGCTCAATGACTTTAAAAATTTATCTTGAAAAAGCTCTTCTC
131 CTTGAAAAGCTCCCCTCAACAGACGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCCCCTC
8931296 AGTA
196 AGTA
*
8931300 GAGGCTCAACAACTTTTGAGAA-TTTAAAATCT-AAAAAAGGCTCATCTCAGCAGAGGCTCAACA
1 GAGGCTCAACAACTTTTGA-AATTTTAAAATCTGAAAAAAGGCTCATCTCAGCAAAGGCTCAACA
* * *
8931363 ACTT-TAAAAA-TTCA-CTGGAAAA-AGCTTC-TCTCAATAGAGGTTCAACAACTTTAAAAATTC
65 A-TTGTAAAAATTTCATCTGGAAAATAGC-TCATCTCAACAAAGGCTCAACAACTTTAAAAATT-
* *
8931423 TCATCTTAGAAAAGCTCCCCTCAACAGA-GACTTAACAACTTTAAAAATCTCATCTTGGAAAAGC
127 TCATCTT-GAAAAGCTCCCCTCAACAGACG-CTCAACAACTTTAAAAAT-TCATCTTGAAAAAGC
8931487 TCCCCTCAGTA
189 TCCCCTCAGTA
*
8931498 GAGGCTCAATAACTTT
1 GAGGCTCAACAACTTT
8931514 AAAATCTTAT
Statistics
Matches: 183, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
195 29 0.16
196 17 0.09
197 35 0.19
198 71 0.39
199 29 0.16
200 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.28
Consensus pattern (199 bp):
GAGGCTCAACAACTTTTGAAATTTTAAAATCTGAAAAAAGGCTCATCTCAGCAAAGGCTCAACAA
TTGTAAAAATTTCATCTGGAAAATAGCTCATCTCAACAAAGGCTCAACAACTTTAAAAATTTCAT
CTTGAAAAGCTCCCCTCAACAGACGCTCAACAACTTTAAAAATTCATCTTGAAAAAGCTCCCCTC
AGTA
Found at i:8932303 original size:18 final size:18
Alignment explanation
Indices: 8932280--8932315 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8932270 TGAGTCATTA
8932280 TTTTTCA-TTTTTTACTTT
1 TTTTTCACTTTTTT-CTTT
8932298 TTTTTCACTTTTTTCTTT
1 TTTTTCACTTTTTTCTTT
8932316 CAAGCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTCACTTTTTTCTTT
Found at i:8933323 original size:18 final size:19
Alignment explanation
Indices: 8933295--8933332 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
8933285 ATTGTCAACC
*
8933295 AATTGTATCTAGCCCTCAT
1 AATTGTATCTAGCCATCAT
8933314 AATT-TATCTAGCCATCAT
1 AATTGTATCTAGCCATCAT
8933332 A
1 A
8933333 TGACCATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.37
Consensus pattern (19 bp):
AATTGTATCTAGCCATCAT
Found at i:8938994 original size:55 final size:55
Alignment explanation
Indices: 8938910--8939019 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
8938900 CGTCATGAGT
8938910 ATGTGCTGTCATATTATGATAATACATAGTGATATGAGTCATTGGACATTTTGTG
1 ATGTGCTGTCATATTATGATAATACATAGTGATATGAGTCATTGGACATTTTGTG
8938965 ATGTGCTGTCATATTATGATAATACATAGTGATATGAGTCATTGGACATTTTGTG
1 ATGTGCTGTCATATTATGATAATACATAGTGATATGAGTCATTGGACATTTTGTG
8939020 CCGTCATATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (55 bp):
ATGTGCTGTCATATTATGATAATACATAGTGATATGAGTCATTGGACATTTTGTG
Found at i:8943165 original size:20 final size:18
Alignment explanation
Indices: 8943140--8943178 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8943130 TTCCTTGATT
8943140 TTTTATTTATTAGAAAAAAA
1 TTTTA-TTATT-GAAAAAAA
*
8943160 TTTTATTCTTGAAAAAAA
1 TTTTATTATTGAAAAAAA
8943178 T
1 T
8943179 AAATTAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 4 0.22
20 5 0.28
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (18 bp):
TTTTATTATTGAAAAAAA
Found at i:8943826 original size:13 final size:13
Alignment explanation
Indices: 8943808--8943845 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
8943798 GATAAAATTT
8943808 TTTTTTCTTATTA
1 TTTTTTCTTATTA
8943821 TTTTTTCTTATTA
1 TTTTTTCTTATTA
* *
8943834 TTCTTTATTATT
1 TTTTTTCTTATT
8943846 TTATAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTCTTATTA
Found at i:8944698 original size:12 final size:12
Alignment explanation
Indices: 8944681--8944713 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8944671 GGGGACTGAG
8944681 TTTTTTTTTGTA
1 TTTTTTTTTGTA
*
8944693 TTTTTTTTGGTA
1 TTTTTTTTTGTA
8944705 TTTTTTTTT
1 TTTTTTTTT
8944714 TAGCAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTGTA
Found at i:8945056 original size:19 final size:19
Alignment explanation
Indices: 8945033--8945075 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8945023 TCTGTTCTAT
*
8945033 TTTTTTA-ATTTTTTTTGG
1 TTTTTTATATTATTTTTGG
*
8945051 TATTTTATATTATTTTTGG
1 TTTTTTATATTATTTTTGG
8945070 TTTTTT
1 TTTTTT
8945076 TTTGTATTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (19 bp):
TTTTTTATATTATTTTTGG
Found at i:8945067 original size:29 final size:28
Alignment explanation
Indices: 8945030--8945093 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
8945020 TTTTCTGTTC
*
8945030 TATTTTTTTAATTTTTTTTGGTATTTTA
1 TATTTTTTTAATTTTTTTTGGTATTCTA
** *
8945058 TATTATTTTTGGTTTTTTTTTGTATTCTA
1 TATT-TTTTTAATTTTTTTTGGTATTCTA
8945087 TATTTTT
1 TATTTTT
8945094 GTTTAATGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 7 0.23
29 24 0.77
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (28 bp):
TATTTTTTTAATTTTTTTTGGTATTCTA
Found at i:8956835 original size:45 final size:44
Alignment explanation
Indices: 8956786--8956890 Score: 106
Period size: 45 Copynumber: 2.3 Consensus size: 44
8956776 TCATCTACAC
*
8956786 AAGCTGGCCTTTGGTACAGA-CACTTGCCT-AAACCACTATTAGCAT
1 AAGCTGGCC-TTGGTA-AGAGCACTTGCCTCAAA-CACCATTAGCAT
* * *
8956831 AAGCTAGACCTTGGTATGAGCACTTGCCTCAAACACCATTGGCAT
1 AAGCT-GGCCTTGGTAAGAGCACTTGCCTCAAACACCATTAGCAT
*
8956876 ATGCTGGCCCTTGGT
1 AAGCTGG-CCTTGGT
8956891 GTGGGCACAT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
44 3 0.06
45 41 0.82
46 6 0.12
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (44 bp):
AAGCTGGCCTTGGTAAGAGCACTTGCCTCAAACACCATTAGCAT
Found at i:8971790 original size:45 final size:44
Alignment explanation
Indices: 8971718--8971822 Score: 104
Period size: 45 Copynumber: 2.4 Consensus size: 44
8971708 GATGGTGTGG
* * * *** *
8971718 GCACATGCCTCGACCATTATTGACATAAGTTGGCTTTTGGTATGA
1 GCACTTGCCTCGACCATCATAGACATAAGCAAGC-CTTGGTATGA
*
8971763 GCACTTGCCTCGACCATCATCAG-CATAAGCAAGCCTTGGTATGG
1 GCACTTGCCTCGACCATCAT-AGACATAAGCAAGCCTTGGTATGA
*
8971807 GTACTTGCCTCGACCA
1 GCACTTGCCTCGACCA
8971823 CCCTCGACAA
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
44 23 0.46
45 26 0.52
46 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (44 bp):
GCACTTGCCTCGACCATCATAGACATAAGCAAGCCTTGGTATGA
Found at i:8979716 original size:12 final size:12
Alignment explanation
Indices: 8979699--8979729 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
8979689 CATAGCAAAA
8979699 TGTGATACTTGG
1 TGTGATACTTGG
8979711 TGTGATACTTGG
1 TGTGATACTTGG
8979723 TGTGATA
1 TGTGATA
8979730 TATAGAATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.06, G:0.32, T:0.42
Consensus pattern (12 bp):
TGTGATACTTGG
Found at i:8986380 original size:44 final size:45
Alignment explanation
Indices: 8986285--8986393 Score: 139
Period size: 44 Copynumber: 2.4 Consensus size: 45
8986275 CATGTACATG
* * * * *
8986285 CCTTAACCATCATTAGCACAAGTTGGCCTTTCATACGGGCACTTA
1 CCTTGACCACCATCAGCACAAGTTAGCCTTTCATACGAGCACTTA
* * *
8986330 CCTTGACCACCATCAGCACAAGTTAGCC-TTGATACGAGTATTTA
1 CCTTGACCACCATCAGCACAAGTTAGCCTTTCATACGAGCACTTA
8986374 CCTTGACCACCATCAGCACA
1 CCTTGACCACCATCAGCACA
8986394 TACTTGCCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 32 0.57
45 24 0.43
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (45 bp):
CCTTGACCACCATCAGCACAAGTTAGCCTTTCATACGAGCACTTA
Found at i:8989465 original size:34 final size:35
Alignment explanation
Indices: 8989394--8989467 Score: 105
Period size: 34 Copynumber: 2.1 Consensus size: 35
8989384 AATGGAATAA
* * *
8989394 GAAGAGTAGACTATTGCACAGTATCTTAGTTAGTG
1 GAAGAGTAGACTATTACACAGTATCTTAGATAATG
*
8989429 GAAG-GTAGACTATTACACAGTATCTTGGATAATG
1 GAAGAGTAGACTATTACACAGTATCTTAGATAATG
8989463 GAAGA
1 GAAGA
8989468 TCAAGATAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 30 0.88
35 4 0.12
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (35 bp):
GAAGAGTAGACTATTACACAGTATCTTAGATAATG
Found at i:9006327 original size:47 final size:47
Alignment explanation
Indices: 9006273--9006368 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 47
9006263 TGGGCCCTTG
9006273 GTATGGGTTATTGCCTCAGACACCTCTTTGACAGATGCTGGCACTTA
1 GTATGGGTTATTGCCTCAGACACCTCTTTGACAGATGCTGGCACTTA
* * * ** *
9006320 GTATGGGTTGTTGCCTCATACACCTTTTTGGTAGATGCTGGTACTTA
1 GTATGGGTTATTGCCTCAGACACCTCTTTGACAGATGCTGGCACTTA
9006367 GT
1 GT
9006369 GCAGCATGTG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (47 bp):
GTATGGGTTATTGCCTCAGACACCTCTTTGACAGATGCTGGCACTTA
Found at i:9018393 original size:19 final size:18
Alignment explanation
Indices: 9018347--9018398 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
9018337 TGACAAATGG
*
9018347 AGCTAGAGTTGCCATGAA
1 AGCTAGAGTTGGCATGAA
* *
9018365 AGCCAAAGTTGGCATGGAA
1 AGCTAGAGTTGGCAT-GAA
*
9018384 AGCTAGAGTTAGCAT
1 AGCTAGAGTTGGCAT
9018399 CGATACAGGT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (18 bp):
AGCTAGAGTTGGCATGAA
Found at i:9020206 original size:24 final size:24
Alignment explanation
Indices: 9020161--9020206 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9020151 GACAAGATTG
* * *
9020161 AGTCAGGCCCAAGCACAGGCACCC
1 AGTCAGACCCAAGCAAAAGCACCC
9020185 AGTCAGACCCAAGCAAAAGCAC
1 AGTCAGACCCAAGCAAAAGCAC
9020207 TAATGATCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.37, C:0.37, G:0.22, T:0.04
Consensus pattern (24 bp):
AGTCAGACCCAAGCAAAAGCACCC
Found at i:9038214 original size:18 final size:18
Alignment explanation
Indices: 9038193--9038242 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
9038183 TATAGGCCTT
*
9038193 TTAGACCCTTCCTAGTCC
1 TTAGACACTTCCTAGTCC
9038211 TTAGACACTTCCTAGTCC
1 TTAGACACTTCCTAGTCC
9038229 TTAGACACTTCCTA
1 TTAGACACTTCCTA
9038243 AGTCAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.22, C:0.34, G:0.10, T:0.34
Consensus pattern (18 bp):
TTAGACACTTCCTAGTCC
Found at i:9046611 original size:17 final size:17
Alignment explanation
Indices: 9046585--9046618 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9046575 GGCCACTTAA
9046585 GCCAAAGAAGTTTAAGG
1 GCCAAAGAAGTTTAAGG
*
9046602 GCCAAGGAAGTTTAAGG
1 GCCAAAGAAGTTTAAGG
9046619 CAATAATAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.32, T:0.18
Consensus pattern (17 bp):
GCCAAAGAAGTTTAAGG
Found at i:9059603 original size:385 final size:385
Alignment explanation
Indices: 9058893--9059659 Score: 1142
Period size: 385 Copynumber: 2.0 Consensus size: 385
9058883 AAAGAGCATA
9058893 TTCCAAGCCTAAGGGTAAAGGCAGGGATGATAGGGACCGAAAAAAGTAGTCCAAGGGGAAAGACC
1 TTCCAAGCCTAAGGGTAAAGGCAGGGATGATAGGGACCGAAAAAAGTAGTCCAAGGGGAAAGACC
* * *
9058958 ATGATCGGGAGTCCAAGGATGGAGATCGAGACCGTTCAACCAAGGATGGCAAGAAGAAGCCACCA
66 ATGATCGGGAGTCCAAGGATAGAGATCAAGACAGTTCAACCAAGGATGGCAAGAAGAAGCCACCA
* ***
9059023 GCAGGCAAGTGGAAAGCAAAGCTTGTCACAGGTCGAGACTTAAGCTCCAAACCCGTGTGGCTCTG
131 ACAGGCAAGTGGAAAGCAAAGCTTGTCACAGGTCGAGACTTAAGCTCCAAACCCGTGCACCTCTG
** * *
9059088 GGACCCGGGCATTCACCCTTCTGACATCTCGAATCAGCCTGACCACCACAGTTCACACCTTTGTG
196 GGACCCAAGCATTCACCCTTCTGACATCTCGAATCAGCCTGACCACCACAGTTCACACCCTTATG
* * *
9059153 AGGTATTATCCACTTTAGCCCCCCTGGCCTCACAGTTTTATCCTACAAAAGGTGTCGCACAAGGC
261 AGATATTATCCACTCTAGCCCCACTGGCCTCACAGTTTTATCCTACAAAAGGTGTCGCACAAGGC
*
9059218 AAAGGTGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGGTC
326 AAAGGTGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCAATGTGGGGTC
* *
9059278 TTCCAAGCCTAAGGGTAAGGGCAGGGATGATAGGGACCGAAAGAAGTAGTCCAAGGGGAAAGACC
1 TTCCAAGCCTAAGGGTAAAGGCAGGGATGATAGGGACCGAAAAAAGTAGTCCAAGGGGAAAGACC
* * *
9059343 ATGATCGGGAGTCTAAGGATAGAGATCAAGACAGTTCAACCAAGGATGGCGAGAGGAAGCCACCA
66 ATGATCGGGAGTCCAAGGATAGAGATCAAGACAGTTCAACCAAGGATGGCAAGAAGAAGCCACCA
* *
9059408 ACAGGTAAGTGGAAAGCAAAGCTTGTCACGGGTCGAGACTTAAGCTCCAAACCCGTGCACCTCTG
131 ACAGGCAAGTGGAAAGCAAAGCTTGTCACAGGTCGAGACTTAAGCTCCAAACCCGTGCACCTCTG
* ** * * * ***
9059473 GGACCCAAGCATTCACCCTTTTGATGTTTTGAATCAGCTTGATTGCCACAGTTCACACCCTTATG
196 GGACCCAAGCATTCACCCTTCTGACATCTCGAATCAGCCTGACCACCACAGTTCACACCCTTATG
* ** * * * * *
9059538 AGATATTCTCTGCTCTGGCCCCACTGGCCTCA-TGATTTTGTCCTATAAAAGGTG-CTTCACAAG
261 AGATATTATCCACTCTAGCCCCACTGGCCTCACAG-TTTTATCCTACAAAAGGTGTC-GCACAAG
*
9059601 GCACAGGTGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCAATGTGGG
324 GCAAAGGTGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCAATGTGGG
9059660 ATTCAGGACT
Statistics
Matches: 340, Mismatches: 40, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
384 2 0.01
385 338 0.99
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.22
Consensus pattern (385 bp):
TTCCAAGCCTAAGGGTAAAGGCAGGGATGATAGGGACCGAAAAAAGTAGTCCAAGGGGAAAGACC
ATGATCGGGAGTCCAAGGATAGAGATCAAGACAGTTCAACCAAGGATGGCAAGAAGAAGCCACCA
ACAGGCAAGTGGAAAGCAAAGCTTGTCACAGGTCGAGACTTAAGCTCCAAACCCGTGCACCTCTG
GGACCCAAGCATTCACCCTTCTGACATCTCGAATCAGCCTGACCACCACAGTTCACACCCTTATG
AGATATTATCCACTCTAGCCCCACTGGCCTCACAGTTTTATCCTACAAAAGGTGTCGCACAAGGC
AAAGGTGGTGTGAACCCTTATATACCCCAGTGACCCTCCTATTATGTTCAATGTGGGGTC
Found at i:9060330 original size:471 final size:470
Alignment explanation
Indices: 9059433--9060361 Score: 1204
Period size: 471 Copynumber: 2.0 Consensus size: 470
9059423 GCAAAGCTTG
* * * * *
9059433 TCACGGGTCGAGACTTAAGCTCCAAACCCGTGCACCTCTGGGACCCAAGCATTCACCCTTTTGAT
1 TCACGGATCGAGACTCAAGCTCCAAACCCGCGCAACTCTGAGACCCAAGCATTCACCCTTTTGAT
* ** *
9059498 GTTTTGAATCAGCTTGATTGCCACAGTTCACACCCTTATGAGATATTCTCTGCTCTGGCCCCACT
66 GCTCAGAATCAGCTTGATTGCCACAGTTCACACCCTTATGAGATATTCTCTACTCTGGCCCCACT
* * ** * *
9059563 GGCCTCATGATTTTGTCCTATAAAAGGTGCTTCACAAGGCACAGGTGGTGTGAACCCTTATATAC
131 GGCCTCACGATTTTGTCCTACAAAAGGCACCTCACAAGGCACAGATGGTGTGAACCCTTATATAC
* * ** *
9059628 CCCAGTGACCCTCCTATTATGTTCAATGTGGGATTCAGGACTCATTCTTAGGTCCGTGACATTCT
196 CCCAGTGACCATCCTATTATGTTCAATGTGGGATTCAAGACTCACCCTTAGGTCCATGACATTCT
* *
9059693 CTCGCACCCAACCTCGTGACACCCTCATCACAGAGGCTGGCCACCCTACCTACCTCCCTCGAGGT
261 CCCACACCCAACCTCGTGACACCCTCATCACAGAGGCTGGCCACCCTACCTACCTCCCTCGAGGT
* * * * * * *
9059758 GCTTGGCGTGGATCGAACGGTTTAGGGCTGACTTTGATACCACTTGTCATAGGTGGAGACTCAAG
326 GCTTGGCATCGATCAAACGATTTAGGGCTGACTCTGATACCACTTGTCACAGGTGGAAACTCAAG
* * * * *
9059823 CTCTGAACCCACGCGACTCTGAGACTCGAACATTCACCCTTTCAGTGTCCC-AGATCAGCCTTCC
391 CTCTGAACCCACGCGACTCCGAGACCCGAACATTCACCCTTCCAGTATCCCGA-ATCAACCTTCC
9059887 TGCCTCGATCTCCTTA
455 TGCCTCGATCTCCTTA
* * *
9059903 TCACGGATCGAGACTCAAGCTCCAAACCTGCGTAACTCTGAGACCCAGGCATTCACCCTTTTGGC
1 TCACGGATCGAGACTCAAGCTCCAAACCCGCGCAACTCTGAGACCCAAGCATTCACCCTTTT-G-
* ** * * *
9059968 AT-CTCAG-ATCAGCCTT-CTTGCCATGGTTCACACCCTTGTGAGGTATTGTCTACTCTGGCCCC
64 ATGCTCAGAATCAG-CTTGATTGCCACAGTTCACACCCTTATGAGATATTCTCTACTCTGGCCCC
* * *
9060030 CCATGGCCTCACGATTTTGTCCTACAAAAGGCACCTCACAAGGCAGAGATGGTGTGAACCCTTTT
128 AC-TGGCCTCACGATTTTGTCCTACAAAAGGCACCTCACAAGGCACAGATGGTGTGAACCCTTAT
* * *
9060095 ATACCCCAGTGACCATCCTATTATGTTCGATGTGGGATTCAAGACTCCCCCTTAGGTCTATGACA
192 ATACCCCAGTGACCATCCTATTATGTTCAATGTGGGATTCAAGACTCACCCTTAGGTCCATGACA
* * * * * *
9060160 TTCTCCCACACCCAACCTCGTGGCGCCCTCGTCACGGAGGTTGGCCACCCTGCCTACCTCCCTCG
257 TTCTCCCACACCCAACCTCGTGACACCCTCATCACAGAGGCTGGCCACCCTACCTACCTCCCTCG
* *
9060225 AGGTGCTTGGCATCGATCAAACGATTTAGGGCTGGCTCTGATACCACTTGTCACAGGTTGAAACT
322 AGGTGCTTGGCATCGATCAAACGATTTAGGGCTGACTCTGATACCACTTGTCACAGGTGGAAACT
* ** *
9060290 CAAGCTCTGAACCTGCACG-G-CTCCGGGACCCGGGCATTCACCCTTCCGGTATCCCGAATCAAC
387 CAAGCTCTGAACC--CACGCGACTCCGAGACCCGAACATTCACCCTTCCAGTATCCCGAATCAAC
9060353 CTTCCTGCC
450 CTTCCTGCC
9060362 ATGGTTCACA
Statistics
Matches: 391, Mismatches: 61, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
470 99 0.25
471 284 0.73
472 4 0.01
473 4 0.01
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (470 bp):
TCACGGATCGAGACTCAAGCTCCAAACCCGCGCAACTCTGAGACCCAAGCATTCACCCTTTTGAT
GCTCAGAATCAGCTTGATTGCCACAGTTCACACCCTTATGAGATATTCTCTACTCTGGCCCCACT
GGCCTCACGATTTTGTCCTACAAAAGGCACCTCACAAGGCACAGATGGTGTGAACCCTTATATAC
CCCAGTGACCATCCTATTATGTTCAATGTGGGATTCAAGACTCACCCTTAGGTCCATGACATTCT
CCCACACCCAACCTCGTGACACCCTCATCACAGAGGCTGGCCACCCTACCTACCTCCCTCGAGGT
GCTTGGCATCGATCAAACGATTTAGGGCTGACTCTGATACCACTTGTCACAGGTGGAAACTCAAG
CTCTGAACCCACGCGACTCCGAGACCCGAACATTCACCCTTCCAGTATCCCGAATCAACCTTCCT
GCCTCGATCTCCTTA
Found at i:9060602 original size:371 final size:371
Alignment explanation
Indices: 9059944--9060875 Score: 1229
Period size: 371 Copynumber: 2.5 Consensus size: 371
9059934 GTAACTCTGA
** * *
9059944 GACCCAGGCATTCACCCTTTTGGCATCTC-AGATCAGCCTTCTTGCCATGGTTCACACCCTTGTG
1 GACCCAGGCATTCACCCTTCCGGCATCCCGA-ATCAGCCTTCCTGCCATGGTTCACACCCTTGTG
*
9060008 AGGTATTGTCTACTCTGGCCCCCCATGGCCTCACGATTTTGTCCTACAAAAGGCACCTCACAAGG
65 AGGTATTGTCTACTCTGGCCCCCC-TGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGG
* * *
9060073 CAGAGATGGTGTGAACCCTTTTATACCCCAGTGACCATCCTATTATGTTCGATGTGGGATTCAAG
129 CGGAGGTGGTGTGAACCCTTTTATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAG
* * * *
9060138 ACTCCCCCTTAGGTCTATGACATTCTCCCACACCCAACCTCGTGGCGCCCTCGTCACGGAGGTTG
194 ACTCCCCCTTAGGTCTATGACATTCTCCCACACCCAACCTCGTGACACCCTCGTCACAGAGGCTG
* *
9060203 GCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCATCGATCAAACGATTTAGGGCTGGCTCTGATA
259 GCCACCCTGCCTACCTCCCTCAAGGTGCTTGGCATCGATCAAACGATTTAGGGCTGGCTCTAATA
*
9060268 CCACTTGTCACAGGTTGAAACTCAAGCTCTGAACCTGCACGGCTCCGG
324 CCACTTGTCACAGGTTGAAACTCAAGCTCTGAACCCGCACGGCTCCGG
* * *
9060316 GACCCGGGCATTCACCCTTCCGGTATCCCGAATCAACCTTCCTGCCATGGTTCACACCCTTGTGA
1 GACCCAGGCATTCACCCTTCCGGCATCCCGAATCAGCCTTCCTGCCATGGTTCACACCCTTGTGA
* * * * * * *
9060381 GGTATTGTCTGCTTTGGCCCCCCTAGCCTCACGGTTTTATCTTACAAAAGGCGTCTCACAAGGCG
66 GGTATTGTCTACTCTGGCCCCCCTGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCG
* *
9060446 GAGGTGGTGTGAACCCTTTTATACCCCAGTGACCCTCCTATTATGTTCAATGTGGGATTCATGAC
131 GAGGTGGTGTGAACCCTTTTATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGAC
*** * **
9060511 TCTTTCTTAGGTCTGTGACATTCTCCTGCACCCAACCTCGTGACACCCTCGTCACAGAGGCTGGC
196 TCCCCCTTAGGTCTATGACATTCTCCCACACCCAACCTCGTGACACCCTCGTCACAGAGGCTGGC
* * * *
9060576 CACCCTGCCTACCTCCCTCAAGGTGCTTGGCGTGGATCGAATGATTTAGGGCTGGCTCTAATACC
261 CACCCTGCCTACCTCCCTCAAGGTGCTTGGCATCGATCAAACGATTTAGGGCTGGCTCTAATACC
** * * * ** *
9060641 ACTTGTCATGGGTTGAGACTTATGCTCTGAACCCGTGCGGCTTCGG
326 ACTTGTCACAGGTTGAAACTCAAGCTCTGAACCCGCACGGCTCCGG
* * * * * * * *
9060687 GACTCAGGCATTGACCCTTCCGGCATCCCGGATCAGCCTGACC-GCCACGATTCACACCATTGTA
1 GACCCAGGCATTCACCCTTCCGGCATCCCGAATCAGCCT-TCCTGCCATGGTTCACACCCTTGTG
* ** * * * ** *
9060751 AGGTATTGTCCACTCTAACCCCTCTGGCTTCATGATTTTGTCCTACAAAAGATGCCTCAAAAGGC
65 AGGTATTGTCTACTCTGGCCCCCCTGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGC
* * * *
9060816 GAAGGTGGTGTGAACCCTTATATACCCCAGTGACTCTCCTATTATGTTCGATGTGAGATT
130 GGAGGTGGTGTGAACCCTTTTATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATT
9060876 TAGGACTCAT
Statistics
Matches: 481, Mismatches: 77, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
371 401 0.83
372 79 0.16
373 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (371 bp):
GACCCAGGCATTCACCCTTCCGGCATCCCGAATCAGCCTTCCTGCCATGGTTCACACCCTTGTGA
GGTATTGTCTACTCTGGCCCCCCTGGCCTCACGATTTTGTCCTACAAAAGGCGCCTCACAAGGCG
GAGGTGGTGTGAACCCTTTTATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAAGAC
TCCCCCTTAGGTCTATGACATTCTCCCACACCCAACCTCGTGACACCCTCGTCACAGAGGCTGGC
CACCCTGCCTACCTCCCTCAAGGTGCTTGGCATCGATCAAACGATTTAGGGCTGGCTCTAATACC
ACTTGTCACAGGTTGAAACTCAAGCTCTGAACCCGCACGGCTCCGG
Found at i:9069872 original size:45 final size:45
Alignment explanation
Indices: 9069802--9069899 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
9069792 CCATCATCAA
* *
9069802 CACAAGCTAGCCTTTGATATAGGCACCTACCTCTACCACTATTAG
1 CACAAGCTAGCCATTGATATAGGCACCTACCTCTACCACCATTAG
* * * * *
9069847 CACAAGCTAGTCATTGGTATGGGCACCTACCTTTACCACCATTGG
1 CACAAGCTAGCCATTGATATAGGCACCTACCTCTACCACCATTAG
9069892 CACAAGCT
1 CACAAGCT
9069900 GGACTTTAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (45 bp):
CACAAGCTAGCCATTGATATAGGCACCTACCTCTACCACCATTAG
Found at i:9069912 original size:45 final size:45
Alignment explanation
Indices: 9069823--9069933 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 45
9069813 CTTTGATATA
* * *
9069823 GGCACCTACCTCTACCACTATTAGCACAAGCTAGTCATTGGTATG
1 GGCACCTACCTCTACCACCATTAGCACAAGCTAGACATTAGTATG
* * * *
9069868 GGCACCTACCTTTACCACCATTGGCACAAGCTGGACTTTAGTATG
1 GGCACCTACCTCTACCACCATTAGCACAAGCTAGACATTAGTATG
* * * *
9069913 GCCATCTGCCTCGACCACCAT
1 GGCACCTACCTCTACCACCAT
9069934 CAACATATGT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.25
Consensus pattern (45 bp):
GGCACCTACCTCTACCACCATTAGCACAAGCTAGACATTAGTATG
Found at i:9071693 original size:21 final size:21
Alignment explanation
Indices: 9071667--9071720 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
9071657 ACCTTGCGTG
**
9071667 ATGGCATGGAGGCCATGTGCC
1 ATGGCATGGAGGCCATACGCC
*
9071688 ATGGCATTGAGGCCATACGCC
1 ATGGCATGGAGGCCATACGCC
9071709 AGTGG-ATGGAGG
1 A-TGGCATGGAGG
9071721 AGCTTACCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.22, C:0.20, G:0.39, T:0.19
Consensus pattern (21 bp):
ATGGCATGGAGGCCATACGCC
Found at i:9083561 original size:18 final size:18
Alignment explanation
Indices: 9083528--9083626 Score: 53
Period size: 18 Copynumber: 5.6 Consensus size: 18
9083518 ACATTCAAAA
* *
9083528 AAAATTTGTAATGATTTC
1 AAAATTTGCAAAGATTTC
*
9083546 AAAATTTGCAAAGA-TTA
1 AAAATTTGCAAAGATTTC
** *
9083563 AAAGATTCACAAAGGTTTTC
1 AAA-ATTTGCAAA-GATTTC
* **
9083583 -ATATTCACAAAGATTTTC
1 AAAATTTGCAAAGA-TTTC
9083601 -AAATTTGC-AAGATTTC
1 AAAATTTGCAAAGATTTC
*
9083617 AAATTTTGCA
1 AAAATTTGCA
9083627 GAGGTTCGAC
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
16 4 0.06
17 17 0.27
18 37 0.60
19 2 0.03
20 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (18 bp):
AAAATTTGCAAAGATTTC
Found at i:9083669 original size:68 final size:68
Alignment explanation
Indices: 9083567--9083743 Score: 183
Period size: 68 Copynumber: 2.5 Consensus size: 68
9083557 AGATTAAAAG
* * * * ** *
9083567 ATTCACAAAGGTTTTCATATTCACAAAGATTTTCAAATTTGCAAGATTTCAAATTTTGCAGAGGT
1 ATTCGCAAAGG-TTT-ATATTCACAAGGACTTTCAAATTCGCAAGATTTCAAATTTCACAGAGAT
9083632 TCGAC
64 TCGAC
* * * *
9083637 ATTTGCAAAGGTTTATATTCACAAGGACTTTCAGATTCGCAAGATTTCAAGTTTCATAGAGATTC
1 ATTCGCAAAGGTTTATATTCACAAGGACTTTCAAATTCGCAAGATTTCAAATTTCACAGAGATTC
* *
9083702 TAG
66 GAC
* *
9083705 ATTCGTAAAGGTTCTAGATTCACAAGGACTTTCATAATT
1 ATTCGCAAAGGTT-TATATTCACAAGGACTTTCA-AATT
9083744 GAAAGAATGG
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
68 54 0.61
69 22 0.25
70 12 0.14
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (68 bp):
ATTCGCAAAGGTTTATATTCACAAGGACTTTCAAATTCGCAAGATTTCAAATTTCACAGAGATTC
GAC
Found at i:9083843 original size:36 final size:34
Alignment explanation
Indices: 9083803--9083926 Score: 79
Period size: 35 Copynumber: 3.6 Consensus size: 34
9083793 TTGCAAAGGT
* *
9083803 TTCAAGTTCATAAGAAATTCAAAGATTCGTAACAGA
1 TTCAAGTTCACAAGAAATTC-AAG-TTCGTAACAAA
* ** *
9083839 TTCAATTTTGCAAGAAATTCAAGTTCGTAATAAA
1 TTCAAGTTCACAAGAAATTCAAGTTCGTAACAAA
** * * * *
9083873 TTCAAAGATTC-TTAGAACTTCAAATTCATAATAAA
1 TTC-AAG-TTCACAAGAAATTCAAGTTCGTAACAAA
* *
9083908 TTTAGGTTCACAAGAAATT
1 TTCAAGTTCACAAGAAATT
9083927 GAAAGATTCA
Statistics
Matches: 67, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
33 3 0.04
34 20 0.30
35 26 0.39
36 18 0.27
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (34 bp):
TTCAAGTTCACAAGAAATTCAAGTTCGTAACAAA
Found at i:9083873 original size:17 final size:17
Alignment explanation
Indices: 9083803--9083877 Score: 69
Period size: 17 Copynumber: 4.3 Consensus size: 17
9083793 TTGCAAAGGT
*
9083803 TTCAAGTTCATAAGAAA
1 TTCAAGTTCGTAAGAAA
* *
9083820 TTCAAAGATTCGTAACAGA
1 TTC-AAG-TTCGTAAGAAA
* * *
9083839 TTCAATTTTGCAAGAAA
1 TTCAAGTTCGTAAGAAA
*
9083856 TTCAAGTTCGTAATAAA
1 TTCAAGTTCGTAAGAAA
9083873 TTCAA
1 TTCAA
9083878 AGATTCTTAG
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
17 28 0.64
18 5 0.11
19 11 0.25
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (17 bp):
TTCAAGTTCGTAAGAAA
Found at i:9084010 original size:17 final size:17
Alignment explanation
Indices: 9083803--9084019 Score: 58
Period size: 17 Copynumber: 12.4 Consensus size: 17
9083793 TTGCAAAGGT
*
9083803 TTCAAGTTCATAAGAAA
1 TTCAAATTCATAAGAAA
* * *
9083820 TTCAAAGATTCGTAACAGA
1 TTC-AA-ATTCATAAGAAA
* ***
9083839 TTCAATTTTGCAAGAAA
1 TTCAAATTCATAAGAAA
* * *
9083856 TTCAAGTTCGTAATAAA
1 TTCAAATTCATAAGAAA
* *
9083873 TTCAAAGATTC-TTAGAAC
1 TTC-AA-ATTCATAAGAAA
*
9083891 TTCAAATTCATAATAAA
1 TTCAAATTCATAAGAAA
* ** *
9083908 TTTAGGTTCACAAGAAA
1 TTCAAATTCATAAGAAA
* * **
9083925 TTGAAAGATTCACAAGAGC
1 TT-CAA-ATTCATAAGAAA
** **
9083944 TTCAGTTTTGTAAGAAA
1 TTCAAATTCATAAGAAA
** * *
9083961 TTCAGGTTTATAAAAAA
1 TTCAAATTCATAAGAAA
* *
9083978 TTTAAAGATTCGTAAGAAA
1 -TTCAA-ATTCATAAGAAA
*
9083997 TTCAAATTCATAAGAAC
1 TTCAAATTCATAAGAAA
9084014 TTCAAA
1 TTCAAA
9084020 GATTTGCAAG
Statistics
Matches: 141, Mismatches: 50, Indels: 18
0.67 0.24 0.09
Matches are distributed among these distances:
16 4 0.03
17 82 0.58
18 22 0.16
19 33 0.23
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (17 bp):
TTCAAATTCATAAGAAA
Found at i:9084011 original size:53 final size:53
Alignment explanation
Indices: 9083803--9084018 Score: 173
Period size: 53 Copynumber: 4.1 Consensus size: 53
9083793 TTGCAAAGGT
* * * ***
9083803 TTCAAGTTCATAAGAAATTCAAAGATTCGTAACAGATTCAATTTTGCAAGAAA
1 TTCAAGTTCATAAGAAATTCAAAGATTCGTAAGAAATTCAAATTCATAAGAAA
* * * * *
9083856 TTCAAGTTCGTAATAAATTCAAAGATTC-TTAGAACTTCAAATTCATAATAAA
1 TTCAAGTTCATAAGAAATTCAAAGATTCGTAAGAAATTCAAATTCATAAGAAA
* * * * ** ** ** **
9083908 TTTAGGTTCACAAGAAATTGAAAGATTCACAAGAGCTTCAGTTTTGTAAGAAA
1 TTCAAGTTCATAAGAAATTCAAAGATTCGTAAGAAATTCAAATTCATAAGAAA
* * * * *
9083961 TTCAGGTTTATAAAAAATTTAAAGATTCGTAAGAAATTCAAATTCATAAGAAC
1 TTCAAGTTCATAAGAAATTCAAAGATTCGTAAGAAATTCAAATTCATAAGAAA
9084014 TTCAA
1 TTCAA
9084019 AGATTTGCAA
Statistics
Matches: 122, Mismatches: 40, Indels: 2
0.74 0.24 0.01
Matches are distributed among these distances:
52 37 0.30
53 85 0.70
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (53 bp):
TTCAAGTTCATAAGAAATTCAAAGATTCGTAAGAAATTCAAATTCATAAGAAA
Found at i:9084021 original size:36 final size:36
Alignment explanation
Indices: 9083850--9084023 Score: 97
Period size: 36 Copynumber: 4.9 Consensus size: 36
9083840 TCAATTTTGC
* * *
9083850 AAGAAATTCAAGTTCGTAATAAATTCAAAGATTC-T
1 AAGAAATTCAAATTCATAAGAAATTCAAAGATTCGT
* * * * * **
9083885 TAGAACTTCAAATTCATAATAAATT--TAGGTTCAC
1 AAGAAATTCAAATTCATAAGAAATTCAAAGATTCGT
* * ** * *
9083919 AAGAAATTGAAAGATTCACAAGAGCTTC--AGTTTTGT
1 AAGAAATT-CAA-ATTCATAAGAAATTCAAAGATTCGT
** * * *
9083955 AAGAAATTCAGGTTTATAAAAAATTTAAAGATTCGT
1 AAGAAATTCAAATTCATAAGAAATTCAAAGATTCGT
*
9083991 AAGAAATTCAAATTCATAAGAACTTCAAAGATT
1 AAGAAATTCAAATTCATAAGAAATTCAAAGATT
9084024 TGCAAGAATT
Statistics
Matches: 98, Mismatches: 35, Indels: 11
0.68 0.24 0.08
Matches are distributed among these distances:
33 5 0.05
34 14 0.14
35 24 0.24
36 55 0.56
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (36 bp):
AAGAAATTCAAATTCATAAGAAATTCAAAGATTCGT
Found at i:9084281 original size:44 final size:45
Alignment explanation
Indices: 9084149--9084336 Score: 147
Period size: 45 Copynumber: 4.2 Consensus size: 45
9084139 ATAGCTAAAA
* * *
9084149 TTCAAAGATTCTCATTCAAAAAATTTCAAGG-TTCCACATGCAAAGT
1 TTCAAAGATTTTCATTCAAAAAATTT-TAGGATT-CACATTCAAAGT
* * * * *
9084195 TTTAAAGA-TTTCATTCAAAAAA-CTTAGGA-TCATATCCAAAAT
1 TTCAAAGATTTTCATTCAAAAAATTTTAGGATTCACATTCAAAGT
* *
9084237 TTCAAAGATTTTCATTTAAAAAATTTTAGGATTCACATTCAAATT
1 TTCAAAGATTTTCATTCAAAAAATTTTAGGATTCACATTCAAAGT
*** * *
9084282 TTCAAA-A-TTTCATATTGGAAAATTTTAAGAAATTCCCATT-AAAGT
1 TTCAAAGATTTTCAT-TCAAAAAATTTT-AG-GATTCACATTCAAAGT
9084327 TTCAAAGATT
1 TTCAAAGATT
9084337 GACATCCAAA
Statistics
Matches: 115, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
42 16 0.14
43 23 0.20
44 18 0.16
45 41 0.36
46 16 0.14
47 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (45 bp):
TTCAAAGATTTTCATTCAAAAAATTTTAGGATTCACATTCAAAGT
Found at i:9085797 original size:13 final size:13
Alignment explanation
Indices: 9085779--9085828 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
9085769 GTCTCATCAA
9085779 TTTTTCCTTCATT
1 TTTTTCCTTCATT
**
9085792 TTTTTCCTTTTTT
1 TTTTTCCTTCATT
9085805 TCTTTTCCTT--TT
1 T-TTTTCCTTCATT
*
9085817 TTTTTCTTTCAT
1 TTTTTCCTTCAT
9085829 CATTTTTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 7 0.23
12 3 0.10
13 13 0.42
14 8 0.26
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTCCTTCATT
Found at i:9088318 original size:16 final size:16
Alignment explanation
Indices: 9088297--9088336 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
9088287 AAAGGTTAGT
*
9088297 AAAAAATGATATATAC
1 AAAAAATAATATATAC
*
9088313 AAAAAATAATATATAG
1 AAAAAATAATATATAC
9088329 AAAAAATA
1 AAAAAATA
9088337 GGATAAAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAAATAATATATAC
Found at i:9088790 original size:22 final size:22
Alignment explanation
Indices: 9088750--9088791 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
9088740 TAAAATGAAT
9088750 AAATAAAAAAAAAATAAAATAC
1 AAATAAAAAAAAAATAAAATAC
*
9088772 AAATAAGAAAGAAAA-AAAAT
1 AAATAA-AAAAAAAATAAAAT
9088792 CTTAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (22 bp):
AAATAAAAAAAAAATAAAATAC
Found at i:9089781 original size:22 final size:23
Alignment explanation
Indices: 9089734--9089783 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
9089724 TAAAGTCATG
9089734 AATAAAATAATAATTAAATATGAA
1 AATAAAATAATAATTAAATA-GAA
*
9089758 AATAATAATAATAA-TAAATAAAA
1 AATAA-AATAATAATTAAATAGAA
9089781 AAT
1 AAT
9089784 CTAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 11 0.46
25 8 0.33
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (23 bp):
AATAAAATAATAATTAAATAGAA
Found at i:9090560 original size:7 final size:7
Alignment explanation
Indices: 9090548--9090573 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9090538 ATTACTCCAC
9090548 ATGATTT
1 ATGATTT
9090555 ATGATTT
1 ATGATTT
9090562 ATGATTT
1 ATGATTT
9090569 ATGAT
1 ATGAT
9090574 AAAAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (7 bp):
ATGATTT
Found at i:9098434 original size:9 final size:9
Alignment explanation
Indices: 9098415--9098445 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
9098405 TTATATATAA
9098415 ATTAA-ATT
1 ATTAATATT
9098423 ATTAATATT
1 ATTAATATT
9098432 ATTAATATT
1 ATTAATATT
9098441 ATTAA
1 ATTAA
9098446 ACTAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
ATTAATATT
Found at i:9098694 original size:17 final size:16
Alignment explanation
Indices: 9098656--9098701 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 16
9098646 TATTAATATA
9098656 ATAAATTATTATAA-TT
1 ATAAA-TATTATAATTT
9098672 AT-AATATTATAATTT
1 ATAAATATTATAATTT
9098687 AGTAAATATT-TAATT
1 A-TAAATATTATAATT
9098702 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 8 0.30
15 5 0.19
16 8 0.30
17 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATAAATATTATAATTT
Found at i:9098721 original size:12 final size:12
Alignment explanation
Indices: 9098616--9098761 Score: 60
Period size: 12 Copynumber: 12.2 Consensus size: 12
9098606 TTATTAAATC
9098616 TTATAA-AATTAA
1 TTATAATAATT-A
*
9098628 TAATAAT-ATGTA
1 TTATAATAAT-TA
*
9098640 TTATTAT-ATTA
1 TTATAATAATTA
*
9098651 ATATAATAAATTA
1 TTATAAT-AATTA
*
9098664 TTATAATTATAATA
1 TTATAA-TA-ATTA
9098678 TTATAAT--TTA
1 TTATAATAATTA
* *
9098688 GTA-AATATTTAA
1 TTATAATAATT-A
9098700 TTA-AAT-ATTA
1 TTATAATAATTA
9098710 TTATAATAATTA
1 TTATAATAATTA
9098722 TTAGTTAATAATTGA
1 TTA--TAATAATT-A
*
9098737 -TATAAAAATTA
1 TTATAATAATTA
*
9098748 AT-TAATAAATTA
1 TTATAAT-AATTA
9098760 TT
1 TT
9098762 TTTTTCGAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 32
0.69 0.09 0.21
Matches are distributed among these distances:
9 3 0.03
10 8 0.08
11 18 0.17
12 42 0.40
13 12 0.12
14 20 0.19
15 1 0.01
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
TTATAATAATTA
Found at i:9099374 original size:181 final size:179
Alignment explanation
Indices: 9098756--9099687 Score: 743
Period size: 181 Copynumber: 5.2 Consensus size: 179
9098746 TAATTAATAA
* ** * *
9098756 ATTATTTTTTTCGAAATAAGCTTACATGAA-A-AAAACCAATTGTTTTATGACAAAACATAAA-G
1 ATTATTTTATTCGAAATAAGCTTGTATGAATAGAAAA--TATTATTTTATGACAAAACA-AAAGG
*** ** * * * * * *
9098818 TCATAATGTTTTGGGATAAATAATTGTTCAGATAGTCATAACTATTTAAACTTATTC-GAAAAAT
63 TCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG-TAAAC
* * * * * *
9098882 AAATTCTTTTTTTTAATTCTCTTACTCATTAATTTTCAGAATATTAATAAATTAGT
127 AAATT-TATTTTTTAAATATTTTACTTATTAA-TTTC-TAATATTAATAAATTAGT
* * * * * * *
9098938 ATTATTTTACTT-TAGATAAGCTTGTATGAACT--AAAATAAGTCTTTTATTACAAAAGAAAATG
1 ATTATTTTA-TTCGAAATAAGCTTGTATGAA-TAGAAAAT-ATTATTTTATGACAAAACAAAAGG
* * * * * *
9099000 TTATAATAATTTGAAATAGATAATTATTTAAATGGTCATCACTATTTGAACTTGTTTCA-TAAAC
63 TCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTCAGTAAAC
* * * * *
9099064 ATATTTATTTTTTAAATCTTTTATTTATTAA-----AATGTTAATAAATTAAT
127 AAATTTATTTTTTAAATATTTTACTTATTAATTTCTAATATTAATAAATTAGT
* * * * *
9099112 ATTATTTTAATCCG-AATAAACTTGAATGAATAG-AAATAATTATTTTATGATAAAACAAAAAGT
1 ATTATTTT-ATTCGAAATAAGCTTGTATGAATAGAAAAT-ATTATTTTATGACAAAACAAAAGGT
* * ** * *
9099175 CATAGCAAGTTGAAATAAATAATCGCTT-AAATAGTCATAACGATTTGAACTTGTTCAGTAAATA
64 CATAACAATTTGAAATAAATAAT-TATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACA
*
9099239 AATTTATTTTTTAAATATTTTACTTATTAATTGTCTTAATATTAATAAATTTGT
128 AATTTATTTTTTAAATATTTTACTTATTAATT-TC-TAATATTAATAAATTAGT
* * *
9099293 ATTATTTTATTCGAAATAAGCTTGTATGAACAGAAAATTTTATTTTATGACAAAACAAAAGGTTA
1 ATTATTTTATTCGAAATAAGCTTGTATGAATAGAAAATATTATTTTATGACAAAACAAAAGGTCA
** * * * * *
9099358 TAGTAATTTCAAATAAATAATTATTCAAATAGTCATAATTATTTAAAATTGTTCAGTAAACAGAT
66 TAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAAT
* * * * *
9099423 TTATTTTTTAAATCTTTTTA-TCATTAATTTTTAGATTTTTAGTAAATTAGT
131 TTATTTTTTAAAT-ATTTTACTTATTAATTTCTA-A-TATTAATAAATTAGT
* * * * *
9099474 ATTAATTTATTTCG-AATAAGCTTATATGAATTGAAACA-ATTCTTTTATGACAAAACAGAAGGT
1 ATTATTTTA-TTCGAAATAAGCTTGTATGAATAGAAA-ATATTATTTTATGACAAAACAAAAGGT
* * * * * * *
9099537 CATAACAATTTGAAATAGATAATTATTCAAATAGTCATGATTATTTGATCTAGTTCAATAAACAT
64 CATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAA
* * * *
9099602 ATTTA-TTTTAAAAAATTTTACTTATTAATTGTCAATATATTAGTAAATTAGT
129 ATTTATTTTTTAAATATTTTACTTATTAATT-TCTA-ATATTAATAAATTAGT
* * *
9099654 ATTAGTTTAATCCAAATAAGCTTGTATGAATAGA
1 ATTATTTTATTCGAAATAAGCTTGTATGAATAGA
9099688 TTATTTTATT
Statistics
Matches: 601, Mismatches: 118, Indels: 64
0.77 0.15 0.08
Matches are distributed among these distances:
173 5 0.01
174 133 0.22
175 3 0.00
179 9 0.01
180 63 0.10
181 279 0.46
182 100 0.17
183 9 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (179 bp):
ATTATTTTATTCGAAATAAGCTTGTATGAATAGAAAATATTATTTTATGACAAAACAAAAGGTCA
TAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAAT
TTATTTTTTAAATATTTTACTTATTAATTTCTAATATTAATAAATTAGT
Found at i:9099427 original size:355 final size:358
Alignment explanation
Indices: 9098770--9099698 Score: 921
Period size: 355 Copynumber: 2.6 Consensus size: 358
9098760 TTTTTTTCGA
* * * * * **** **
9098770 AATAAGCTTACATGAA-AAAAACCAATTGTTTTATGACAAAACATAAAGTCATAATGTTTTGGGA
1 AATAAACTTATATGAATAGAAA-CAATTATTTTATGACAAAACAAAAAGTCATAACAAGTTGAAA
* * * * *
9098834 TAAATAATTG-TTCAGATAGTCATAACTATTTAAACTTATTC-GAAAAATAAATTCTTTTTTTTA
65 TAAATAA-TGATTCAAATAGTCATAACTATTTGAACTTGTTCAG-TAAATAAATT-TATTTTTTA
* * * * * * *
9098897 ATTCTCTTACTCATTAATTTTCAGAATATTAATAAATTAGTATTATTTTACTT-TAGATAAGCTT
127 AATATTTTACTTATTAATTGTCA-AATATTAATAAATTAGTATTATTTTA-TTCCAAATAAGCTT
* ** * * * * * *
9098961 GTATGAAC-TAAAATAAGTCTTTTATTACAAAAGAAAATGTTATAATAATTTGAAATAGATAATT
190 GTATGAACAGAAAAT-TTTATTTTATGACAAAACAAAAGGTTATAATAATTTCAAATAAATAATT
* * * * * *
9099025 ATTTAAATGGTCATCACTATTTGAACTTGTTTCATAAACATATTTATTTTTTAAATC-TTTTAT-
254 ATTCAAATAGTCATAACTATTTAAAATTGTTTCATAAACAGATTTATTTTTTAAATCTTTTTATA
*
9099088 TT-A-TTAAAATGTTAATAAATTAATATTATTTTAATCCG
319 TTAATTTAAAATGTTAATAAATTAATATTAATTTAATCCG
* * *
9099126 AATAAACTTGA-ATGAATAGAAATAATTATTTTATGATAAAACAAAAAGTCATAGCAAGTTGAAA
1 AATAAACTT-ATATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAACAAGTTGAAA
* *
9099190 TAAATAATCGCTT-AAATAGTCATAACGATTTGAACTTGTTCAGTAAATAAATTTATTTTTTAAA
65 TAAATAAT-GATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAAATTTATTTTTTAAA
* * *
9099254 TATTTTACTTATTAATTGTCTTAATATTAATAAATTTGTATTATTTTATTCGAAATAAGCTTGTA
129 TATTTTACTTATTAATTGTC-AAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTA
*
9099319 TGAACAGAAAATTTTATTTTATGACAAAACAAAAGGTTATAGTAATTTCAAATAAATAATTATTC
193 TGAACAGAAAATTTTATTTTATGACAAAACAAAAGGTTATAATAATTTCAAATAAATAATTATTC
*
9099384 AAATAGTCATAATTATTTAAAATTG-TTCAGTAAACAGATTTATTTTTTAAATCTTTTTATCATT
258 AAATAGTCATAACTATTTAAAATTGTTTCA-TAAACAGATTTATTTTTTAAATCTTTTTAT-ATT
* * * * * * *
9099448 AATTTTTAGATTTTTAGTAAATTAGTATTAATTTATTTCG
321 AA--TTTAAAATGTTAATAAATTAATATTAATTTAATCCG
* * * * * *
9099488 AATAAGCTTATATGAATTGAAACAATTCTTTTATGACAAAACAGAAGGTCATAACAATTTGAAAT
1 AATAAACTTATATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAACAAGTTGAAAT
* * * * * * * * * * *
9099553 AGATAATTATTCAAATAGTCATGATTATTTGATCTAGTTCAATAAACATATTTA-TTTTAAAAAA
66 AAATAATGATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAAATTTATTTTTTAAATA
* * *
9099617 TTTTACTTATTAATTGTCAATATATTAGTAAATTAGTATTAGTTTAATCCAAATAAGCTTGTATG
131 TTTTACTTATTAATTGTCAA-ATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATG
* **
9099682 AATAGATTATTTTATTT
195 AACAGAAAATTTTATTT
9099699 CGAATAAGCT
Statistics
Matches: 470, Mismatches: 84, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
354 6 0.01
355 153 0.33
356 96 0.20
357 8 0.02
358 2 0.00
359 1 0.00
360 1 0.00
361 82 0.17
362 121 0.26
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (358 bp):
AATAAACTTATATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAACAAGTTGAAAT
AAATAATGATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAATAAATTTATTTTTTAAATA
TTTTACTTATTAATTGTCAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGA
ACAGAAAATTTTATTTTATGACAAAACAAAAGGTTATAATAATTTCAAATAAATAATTATTCAAA
TAGTCATAACTATTTAAAATTGTTTCATAAACAGATTTATTTTTTAAATCTTTTTATATTAATTT
AAAATGTTAATAAATTAATATTAATTTAATCCG
Found at i:9100430 original size:10 final size:10
Alignment explanation
Indices: 9100415--9100448 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
9100405 TATGTTATAA
9100415 TAATTAAATT
1 TAATTAAATT
9100425 TAATTATAATT
1 TAATTA-AATT
*
9100436 TAAATAAATT
1 TAATTAAATT
9100446 TAA
1 TAA
9100449 ATTTATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATTAAATT
Found at i:9100459 original size:21 final size:20
Alignment explanation
Indices: 9100409--9100459 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
9100399 TATTTCTATG
* *
9100409 TTATAATAATTAAATTT-AA
1 TTATATTAAATAAATTTAAA
9100428 TTATAATTTAAATAAATTTAAA
1 TTAT-A-TTAAATAAATTTAAA
9100450 TTTATATTAA
1 -TTATATTAA
9100460 TAATTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 4 0.15
20 1 0.04
21 14 0.54
22 3 0.12
23 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATATTAAATAAATTTAAA
Found at i:9100631 original size:14 final size:14
Alignment explanation
Indices: 9100612--9100654 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
9100602 TAGTTTATAG
9100612 TTTATATAAATTAT
1 TTTATATAAATTAT
* *
9100626 TTTATATTAATTAG
1 TTTATATAAATTAT
*
9100640 ATTATATAAAATTAT
1 TTTATAT-AAATTAT
9100655 ATAGATTTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
TTTATATAAATTAT
Found at i:9100688 original size:62 final size:62
Alignment explanation
Indices: 9100609--9100738 Score: 244
Period size: 62 Copynumber: 2.1 Consensus size: 62
9100599 TATTAGTTTA
9100609 TAGTTT-ATATAAATTATTTTATATTAATTAGATTATATAAAATTATATAGATTTGTCAATT
1 TAGTTTAATATAAATTATTTTATATTAATTAGATTATATAAAATTATATAGATTTGTCAATT
*
9100670 TAGTTTAATATAAGTTATTTTATATTAATTAGATTATATAAAATTATATAGATTTGTCAATT
1 TAGTTTAATATAAATTATTTTATATTAATTAGATTATATAAAATTATATAGATTTGTCAATT
9100732 TAGTTTA
1 TAGTTTA
9100739 TAGTTTAAAT
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 6 0.09
62 61 0.91
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.51
Consensus pattern (62 bp):
TAGTTTAATATAAATTATTTTATATTAATTAGATTATATAAAATTATATAGATTTGTCAATT
Found at i:9100740 original size:33 final size:33
Alignment explanation
Indices: 9100636--9100740 Score: 112
Period size: 33 Copynumber: 3.3 Consensus size: 33
9100626 TTTATATTAA
9100636 TTAGATTATATAAAATTATATAGATTTGTCAAT
1 TTAGATTATATAAAATTATATAGATTTGTCAAT
* * ** *
9100669 TTAGTTTA-ATATAAGTTAT-TTTATAT-T-AA-
1 TTAGATTATATA-AAATTATATAGATTTGTCAAT
9100698 TTAGATTATATAAAATTATATAGATTTGTCAAT
1 TTAGATTATATAAAATTATATAGATTTGTCAAT
*
9100731 TTAGTTTATA
1 TTAGATTATA
9100741 GTTTAAATAG
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
29 13 0.24
30 9 0.16
31 2 0.04
32 9 0.16
33 22 0.40
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.50
Consensus pattern (33 bp):
TTAGATTATATAAAATTATATAGATTTGTCAAT
Found at i:9100871 original size:24 final size:24
Alignment explanation
Indices: 9100844--9100923 Score: 65
Period size: 24 Copynumber: 3.3 Consensus size: 24
9100834 ATCTCTTTTT
*
9100844 ATTTATTAATATTAATTTTAATTA
1 ATTTATTAATATTAATTTTAAATA
* *
9100868 ATTTAAGTAATA-TAATAATTAAATA
1 ATTT-ATTAATATTAAT-TTTAAATA
* * *
9100893 A-TTACTTAAAATAAATTTTAACTA
1 ATTTA-TTAATATTAATTTTAAATA
9100917 ATTTATT
1 ATTTATT
9100924 CTTTTAATAA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
23 1 0.02
24 23 0.53
25 19 0.44
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (24 bp):
ATTTATTAATATTAATTTTAAATA
Found at i:9101650 original size:32 final size:31
Alignment explanation
Indices: 9101553--9101655 Score: 77
Period size: 32 Copynumber: 3.2 Consensus size: 31
9101543 TATACTAAAT
*
9101553 TATTAAATA-TT-ATTAAGTTAATATCTAATACT
1 TATTAAATATTTAATT-A-TTAATATCTAATA-A
* * *
9101585 TAATTAATTAATTTAATTATGAATAAT-TCATAA
1 T-ATTAAAT-ATTTAATTATTAAT-ATCTAATAA
9101618 TATTAAATATTTAATTCATTAATATCTAATAA
1 TATTAAATATTTAATT-ATTAATATCTAATAA
*
9101650 TTTTAA
1 TATTAA
9101656 TTAGCTTCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
31 10 0.18
32 22 0.39
33 7 0.12
34 9 0.16
35 5 0.09
36 3 0.05
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (31 bp):
TATTAAATATTTAATTATTAATATCTAATAA
Found at i:9102689 original size:36 final size:36
Alignment explanation
Indices: 9102643--9102717 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
9102633 TATATTAAAT
*
9102643 TAAATATTAATT-ATATATT-ACTAATTTACTAATTAA
1 TAAATATTAATTAATAAATTAACTAA--TACTAATTAA
* *
9102679 TAAATGTTAATTAATAAATTAACTAATATTAATTAA
1 TAAATATTAATTAATAAATTAACTAATACTAATTAA
9102715 TAA
1 TAA
9102718 CAATATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 23 0.68
37 6 0.18
38 5 0.15
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (36 bp):
TAAATATTAATTAATAAATTAACTAATACTAATTAA
Found at i:9103776 original size:176 final size:175
Alignment explanation
Indices: 9102853--9105051 Score: 1376
Period size: 181 Copynumber: 12.2 Consensus size: 175
9102843 AATTCACAAC
* * *
9102853 GATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTGTTCGGTAAACAAATTTAG
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGT-AACATATTTA-
* * * * * *
9102918 TTTTTCAAATATCCCACTTATTAATCTTTCAAAA-GTTAATAAATTAGTATTATTTTCTTTTGAA
64 TTTTT-TAA-AT-CTACTTATTAAT-TTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAA
* * * * * * *
9102982 TAAGCTTGTATGAACTA-AAATAATTATTTTATGATTAAACAAAAGGTCAAAAC
125 TAAGCTTGTATGAA--AGAAACAATTGTTTTATGA-CAAAAAAAAGATCATAAT
* * * * * * ** * *
9103035 GATTTGAAACAGATAATTATTCTAATAATCTTAACTATTTAAAC-TAATCGGCAAACACATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGG-TAACATATTTAT
* *
9103099 TTTTTAAATCTCTTACTTATTAATTTTTAAAATATT-ATATATTAGTATTATTTT-TATCTGAAT
65 TTTTTAAA--TC-TACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTC-GAAT
* * * * *
9103162 TAGCTTATATGATAA-AAA-AATTATTTTATGATAAAAAAAAGATCATAAC
126 AAGCTTGTATGA-AAGAAACAATTGTTTTATGACAAAAAAAAGATCATAAT
* * * * * **
9103211 AATTTGAGATTA-ATATTTGTTCAAATAGTCATAACTATTAGAAC-TGCTTTGAAAAACAGT-TT
1 GATTTGA-AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTCG-GTAACA-TATT
* * * * *
9103273 TAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTC-A
62 TATTTTTTAAA--TC-TACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGA
* * * ** * * *
9103337 GATAAGTTTTTATTAGCTGAAATAATTGTTTTATGACAAAACAAAATG-TTAAAAT
124 -ATAAGCTTGTATGA-AAGAAACAATTGTTTTATGACAAAA-AAAA-GATCATAAT
* * * * * * * ** *
9103392 AATTTTAAACAGATAATTGTTTAAATAATCATATCTATTTGAAATTGTTCAATAAACA-GTTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGT-AACATATTTA-
* * * * * * *
9103456 TTTTTTAAATCT-CTTGCTTTAATTTTTCAAATGTTAAGAAATTAGTATTATCTTATTCCAAATA
64 TTTTTTAAATCTACTT--ATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * *
9103520 AGCTTGTATGAACTGAAATAATTGTTTTATGACTAAACAAAAGGAT-AGAAT
127 AGCTTGTATGAA-AGAAACAATTGTTTTATGAC-AAA-AAAAAGATCATAAT
* * * * *
9103571 GATTTGAAATAGATAATTATTCTAATAGTCCTAACTATTTGAACTAGTTCAGCTAACATATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTC-GGTAACATATTTAT
* * * *
9103636 TTTTTAAATCT-CTTATTAATTTTTAAAATATTATTAAATTAGTATCATTTTAATCCGAATAAGC
65 TTTTTAAATCTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGC
* *
9103700 TTGTATGAAAGGAAACAATTGTTGTATGA-AAAAATAAAGATCATTAT
130 TTGTATGAAA-GAAACAATTGTTTTATGACAAAAA-AAAGATCATAAT
* * * *
9103747 GATTTGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTGTTAA-ATAGATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAACAT--ATTTA
** * * ** * *
9103811 GCTTTTAAATCT-CTTATTAATTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGAATAAT
64 TTTTTTAAATCTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAG
* * * * *
9103875 TTTGTATGAACAAAAAAAATTCTTTTATGACAAAACAAAAGATCATAAA
129 CTTGTATGAA-AGAAACAATTGTTTTATGACAAAA-AAAAGATCATAAT
* * * *
9103924 GATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTGCTCGGTAAGCATATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAA-CATATTTAT
* * * * *
9103989 TTTTTAAATCTTTTACTTATTAATTTTTGAAATTTTAATAAATTAGTACTATTTTATTTCAAAAA
65 TTTTTAAATC---TACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * * *
9104054 AGCTTTTTATGACCAGAAACAATTGGTTTATGACAAAATAAAAGGTCATAGCT
127 AGC-TTGTATGA-AAGAAACAATTGTTTTATGACAAAA-AAAAGATCATA-AT
* * * ** **
9104107 -ATTTGAAATAGATAATTCTTCAAATAGTTATAACTATTTGAA-TGTGCTCAGAAAACGGATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TGTTC-GGTAACATATTTA
* * ** *
9104170 TTTTTTAAAATTTTACTTATTAAGTTTTGGAATATTAATAAATTTA-AATTATTTTA-TTCGAAA
64 TTTTTT-AAA-TCTACTTATTAATTTTTAAAATATTAATAAA-TTAGTATTATTTTATTTCG-AA
* * *
9104233 TAAGCTTGCATGAACA-AAGCCAATTGTTTTATGACAAAACAAAAGGTCATAAT
125 TAAGCTTGTATGAA-AGAA-ACAATTGTTTTATGACAAAA-AAAAGATCATAAT
* * ** *
9104286 GTTTTGAAATAAATAATTGTTCAAATAGTCATAGTTATTTGAACTTATTCGGTAAACATATTCT-
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGT-AACATATT-TA
* * * ** * ** * *
9104350 TTTCTTAATTCTCTCACTCATTAATTTTTGGAATATTAATAAATTAATATTATCCTACTTCAAAT
64 TTTTTTAA--ATCT-ACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* * * * *
9104415 AAGCTTATATGAATTGAAACAAGTGTTTTATTAGAAAAGAAAATG-TCATAAT
126 AAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAAA-AAAA-GATCATAAT
* * * * * * * *
9104467 GATTTGAAATAGATAATTATTGAAATATTAATGACTATTTAAACTTGTTTGGTAAATATATTTAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGT-AACATATTTAT
* * * * *
9104532 ATTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATTAATTAATATTATTTTAATTCGAAT
65 -TTTTTAAATC---TACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* * * * *
9104597 AAACTTGTATGAATAGAAATAATTATTTCATGACAAAACAAAAAATCATAACAT
126 AAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAAA-AAAAGATCAT-A-AT
* * * * * * * *
9104651 GA--TGAAACAAATAATTGCTCAAATAGCCATAA-TGATTAGAACTTGTTTTGATAAACAGATTT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACT-ATTTGAACTTG-TTCGGT-AACATATTT
* *
9104713 A-TTTTTAAATCTTTTACTTATTAATTATCTT--AATATTAATAAATTTGTATCATTTTA-TTCG
63 ATTTTTTAAATC---TACTTATTAATT-T-TTAAAATATTAATAAATTAGTATTATTTTATTTCG
* * * * * *
9104774 AAATAAGCTTAG-ATGAACA-AAAAAATTCTTTTATTACAAAACAAAAGGTTATAGCT
123 -AATAAGCTT-GTATGAA-AGAAACAATTGTTTTATGACAAAA-AAAAGATCATA-AT
* * * * * * ** * * *
9104830 -ATTTCAAATAGATAATTATTCAAATAGTCCTAATTATTTAAATTTGTTTAGTAAACAAAGTCAT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGT-AACATATTTAT
** * * * *
9104894 TTTTTAAATCT-CTTTATTATTAATTTTTGGATTACTAATAAATTAGTAATATTTTATTTTGAAT
65 TTTTTAAATCTAC----TTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAAT
* * * * * *
9104958 AAGCTTATATGAACTGAAACAACTCTTTTATGACAAATCAAAAGGTCATAAT
126 AAGCTTGTATGAA-AGAAACAATTGTTTTATGACAAA-AAAAAGATCATAAT
** * * *
9105010 GATTTGAAATAGATAATTAATCAAATTGTCATGATTATTTGA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
9105052 TCTAGTGTAC
Statistics
Matches: 1593, Mismatches: 327, Indels: 195
0.75 0.15 0.09
Matches are distributed among these distances:
174 4 0.00
175 12 0.01
176 175 0.11
177 206 0.13
178 38 0.02
179 200 0.13
180 270 0.17
181 406 0.25
182 254 0.16
183 23 0.01
184 5 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (175 bp):
GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAACATATTTATT
TTTTAAATCTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCT
TGTATGAAAGAAACAATTGTTTTATGACAAAAAAAAGATCATAAT
Found at i:9104272 original size:362 final size:358
Alignment explanation
Indices: 9102853--9105041 Score: 1648
Period size: 362 Copynumber: 6.1 Consensus size: 358
9102843 AATTCACAAC
* * * * *
9102853 GATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTGTTCGGTAAACAAATTTAG
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACTTGTTCGGTAAACATATTTA-
* * ** * * * **
9102918 TTTTTCAAATATCCCACTTATTAATCTTTCAAA-AGTTAATAAATTAGTATTATTTTCTTTTGAA
65 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATA-TTAATAAATTAGTATTATTTTATTTCAAA
* * * ** * *
9102982 TAAGCTTGTATGAACTA-AAATAATTATTTTATGATTAAACAAAAGGTCAAAAC-GATTTGAAAC
129 TAAGCTTATATGAAC-AGAAACAATTGTTTTATGACAAAACAAAAGGTC-ATACTGATTTGAAAT
* * * * * ** * * *
9103045 AGATAATTATTCTAATAATCTTAACTATTTAAACTAATCGGCAAACACATTTATTTTTT-AAATC
192 AGATAATTATTCAAATAGTCATAACTATTTGAATTGTTCAGTAAACAGATTTATTTTTTAAAATC
* * * *
9103109 TCTTACTTATTAATTTTTAAAATATT-ATATATTAGTATTATTTT-TATCTGAATTAGCTTATAT
257 T-TTACTTATTAATTTTTAAAATATTAATAAATTAGAATTATTTTAT-TC-GAATAAGCTTGTAT
*
9103172 GATA-AAAAAATTATTTTATGATAAAA-AAAAGATCATAACA
319 GA-ACAAAAAATTATTTTATGACAAAACAAAAGATCATAA-A
* * * * **
9103212 -ATTTGAGATTAATATTTGTTCAAATAGTCATAACTA-TTAGAAC-TGCTTTGAAAAACAGT-TT
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTA-AACTTG-TTCGGTAAACA-TATT
* * * * *
9103273 TAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAG
63 TATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAA
* * * * * * * * * * * * *
9103338 ATAAGTTTTTATTAGCTGAAATAATTGTTTTATGACAAAACAAAATGTTAAAATAATTTTAAACA
128 ATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATACTGATTTGAAATA
* * * * * *
9103403 GATAATTGTTTAAATAATCATATCTATTTGAAATTGTTCAATAAACAG-TTTATTTTTTTAAATC
193 GATAATTATTCAAATAGTCATAACTATTTG-AATTGTTCAGTAAACAGATTTATTTTTTAAAATC
* * * * * * *
9103467 TCTTGC-T-TTAATTTTTCAAATGTTAAGAAATTAGTATTATCTTATTCCAAATAAGCTTGTATG
257 T-TTACTTATTAATTTTTAAAATATTAATAAATTAGAATTATTTTATT-CGAATAAGCTTGTATG
* * * * *
9103530 AACTGAAATAATTGTTTTATGACTAAACAAAAGGAT-AGAAT
320 AAC--AAAAAATTATTTTATGACAAAACAAAA-GATCATAAA
* * * * * * *
9103571 GATTTGAAATAGATAATTATTCTAATAGTCCTAACTATTTGAACTAGTTCAGCT-AACATATTTA
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACTTGTTC-GGTAAACATATTTA
* * * * * *
9103635 TTTTTTAAA--TC-T-CTTATTAATTTTTAAAATATTATTAAATTAGTATCATTTTAATCCGAAT
65 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * *
9103696 AAGCTTGTATGAA-AGGAAACAATTGTTGTATGA-AAAA-ATAAAGATCATTA-TGATTTGAGAT
130 AAGCTTATATGAACA-GAAACAATTGTTTTATGACAAAACA-AAAGGTCA-TACTGATTTGAAAT
* * * * **
9103757 AGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTT-TGTTAAATAGATTTAGCTTTT-AAA
192 AGATAATTATTCAAATAGTCATAACTATTTGAA-TTGTTCAG-TAAACAGATTTATTTTTTAAAA
* * * * **
9103820 TC--T-CTTATTAATTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGAATAATTTTGTAT
255 TCTTTACTTATTAATTTTTAAAATATTAATAAATTAGAATTATTTTA-TTCGAATAAGCTTGTAT
*
9103882 GAACAAAAAAAATTCTTTTATGACAAAACAAAAGATCATAAA
319 GAAC--AAAAAATTATTTTATGACAAAACAAAAGATCATAAA
* * *
9103924 GATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTGCTCGGTAAGCATATTTAT
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACTTGTTCGGTAAACATATTTAT
* * * *
9103989 TTTTTAAATCTTTTACTTATTAATTTTTGAAATTTTAATAAATTAGTACTATTTTATTTCAAAAA
66 TTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * * *
9104054 AGCTTTTTATGACCAGAAACAATTGGTTTATGACAAAATAAAAGGTCATAGCT-ATTTGAAATAG
131 AGC-TTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATA-CTGATTTGAAATAG
* * * * *
9104118 ATAATTCTTCAAATAGTTATAACTATTTGAATGTGCTCAGAAAACGGATTTATTTTTTAAAAT-T
194 ATAATTATTCAAATAGTCATAACTATTTGAAT-TGTTCAGTAAACAGATTTATTTTTTAAAATCT
* ** *
9104182 TTACTTATTAAGTTTTGGAATATTAATAAATTTA-AATTATTTTATTCGAAATAAGCTTGCATGA
258 TTACTTATTAATTTTTAAAATATTAATAAA-TTAGAATTATTTTATTCG-AATAAGCTTGTATGA
* * * *
9104246 ACAAAGCCAATTGTTTTATGACAAAACAAAAGGTCATAAT
321 ACAAA--AAATTATTTTATGACAAAACAAAAGATCATAAA
* ** * *
9104286 GTTTTGAAATAAATAATTGTTCAAATAGTCATAGTTATTTGAACTTATTCGGTAAACATATTCT-
1 GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACTTGTTCGGTAAACATATT-TA
* * * * * * ** *
9104350 TTTCTTAATTCTCTCACTCATTAATTTTTGGAATATTAATAAATTAATATTATCCTACTTCAAAT
65 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAAT
** * * * * * *
9104415 AAGCTTATATGAATTGAAACAAGTGTTTTATTAGAAAAGAAAATGTCATAATGATTTGAAATAGA
130 AAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATACTGATTTGAAATAGA
* * * * * ** * *
9104480 TAATTATTGAAATATTAATGACTATTTAAACTTGTTTGGTAAATATATTTATATTTTT-AAATCT
195 TAATTATTCAAATAGTCATAACTATTTGAA-TTGTTCAGTAAACAGATTTAT-TTTTTAAAATC-
* * * *
9104544 TTTACTTATTAATTGTCAAAATATTAATTAATTA-ATATTATTTTAATTCGAATAAACTTGTATG
257 TTTACTTATTAATTTTTAAAATATTAATAAATTAGA-ATTATTTT-ATTCGAATAAGCTTGTATG
* * *
9104608 AATAGAAATAATTATTTCATGACAAAACAAAAAATCATAACA
320 AACA-AAA-AATTATTTTATGACAAAACAAAAGATCATAA-A
* * * * * *
9104650 TGA--TGAAACAAATAATTGCTCAAATAGCCATAA-TGA-TTAGAACTTGTTTTGATAAACAGAT
1 -GATTTGAAATAAATAATTGTTCAAATAGTCATAACT-ATTTA-AACTTG-TTCGGTAAACATAT
* * *
9104711 TTA-TTTTTAAATCTTTTACTTATTAATTATCTT--AATATTAATAAATTTGTATCATTTTA-TT
62 TTATTTTTTAAATCTCTTACTTATTAATT-T-TTGAAATATTAATAAATTAGTATTATTTTATTT
* * * * * *
9104772 CGAAATAAGCTTAGATGAACA-AAAAAATTCTTTTATTACAAAACAAAAGGTTATAGCT-ATTTC
125 C-AAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATA-CTGATTTG
* * * * * * *
9104835 AAATAGATAATTATTCAAATAGTCCTAATTATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTA
188 AAATAGATAATTATTCAAATAGTCATAACTATTTGAA-TTGTTCAGTAAACAGATTTATTTTTTA
* ** * * *
9104900 AATCTCTTTA-TTATTAATTTTTGGATTACTAATAAATTAGTAA-TATTTTATTTTGAATAAGCT
252 AA-ATCTTTACTTATTAATTTTTAAAATATTAATAAATTAG-AATTATTTTA-TTCGAATAAGCT
* * * * * * *
9104963 TATATGAACTGAAACAACTCTTTTATGACAAATCAAAAGGTCATAAT
314 TGTATGAAC--AAAAAATTATTTTATGACAAAACAAAAGATCATAAA
* ** *
9105010 GATTTGAAATAGATAATTAATCAAATTGTCAT
1 GATTTGAAATAAATAATTGTTCAAATAGTCAT
9105042 GATTATTTGA
Statistics
Matches: 1441, Mismatches: 308, Indels: 160
0.75 0.16 0.08
Matches are distributed among these distances:
351 1 0.00
352 7 0.00
353 133 0.09
354 5 0.00
355 60 0.04
356 94 0.07
357 207 0.14
358 96 0.07
359 87 0.06
360 69 0.05
361 197 0.14
362 289 0.20
363 173 0.12
364 20 0.01
365 3 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (358 bp):
GATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACTTGTTCGGTAAACATATTTAT
TTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATA
AGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGTCATACTGATTTGAAATAGAT
AATTATTCAAATAGTCATAACTATTTGAATTGTTCAGTAAACAGATTTATTTTTTAAAATCTTTA
CTTATTAATTTTTAAAATATTAATAAATTAGAATTATTTTATTCGAATAAGCTTGTATGAACAAA
AAATTATTTTATGACAAAACAAAAGATCATAAA
Found at i:9105372 original size:24 final size:23
Alignment explanation
Indices: 9105317--9105373 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 23
9105307 TAGGTAAACA
9105317 AAATTATTTTTTAAATATTTTAAT
1 AAATTATTTTTTAAATA-TTTAAT
*
9105341 -TATTATTTTTTGAAATA-TTAAT
1 AAATTATTTTTT-AAATATTTAAT
9105363 AAATTCATTTT
1 AAATT-ATTTT
9105374 ATTTTATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 5 0.18
23 13 0.46
24 10 0.36
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (23 bp):
AAATTATTTTTTAAATATTTAAT
Found at i:9105573 original size:182 final size:176
Alignment explanation
Indices: 9105066--9105661 Score: 553
Period size: 182 Copynumber: 3.3 Consensus size: 176
9105056 GTGTACAACA
* * **
9105066 AAAAAAAATGTCATAATGATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAACTAAT
1 AAAAAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGGT
* * * * *
9105131 TT-GATACATAGATTTATTGTCTAAATC-ACTTATTAATTTTTGA-AATATTAATAGATTAGTAT
66 TTGGAAACA-A-ATTTATTTTTTAAATCTAATTATTAATTTTTTAGAATATTAATAGATTAGTAT
* * * * *
9105193 TACTTTATTCCAAATAAACTTA-TATGAACAAAAACATTTGTTGTATGAC
129 TATTTTATTTCAAATAAGC-TAGTATGAA-AAAAACAATTGTTTTATGAC
* * * * * *
9105242 AAAACAAAAAGTAATAATGATTTGAAATAAATAACTATTCAAATAGT-ATAATTTTTTGAACTGG
1 AAAA-AAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGG
* * * *
9105306 TTAGGTAAACAAAATTATTTTTTAAATATTTTAATTATT-ATTTTTT-GAAATATTAATAAATTC
65 TTTGG-AAACAAATTTATTTTTT-AA-A-TCTAATTATTAATTTTTTAG-AATATTAATAGATT-
* *
9105369 A-TTTTATTTTATTTCAAATAAGCTAGTATGAAAAGAGAA-AATTGTTTTATGAT
124 AGTATTATTTTATTTCAAATAAGCTAGTATGAAAA-A-AACAATTGTTTTATGAC
* * * * *
9105422 AAGAAAAAAGGTCATAACGATTTGAAATAGATAATTGTTCATATAGTCTTAACTATTTGAATTGG
1 AA-AAAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGG
*
9105487 TTTGGCAAACAAATTTATTTTTTAAATCCCGTAATTATTAATTTTTTAGAATATTATTAGATTAG
65 TTTGG-AAACAAATTTATTTTTTAAAT--C-TAATTATTAATTTTTTAGAATATTAATAGATTAG
* ** * * *
9105552 TATTGTTTTATTTTGAATAAGCTTGTATGAACATAAATAATTGTTTTATGAC
126 TATTATTTTATTTCAAATAAGCTAGTATGAA-AAAAACAATTGTTTTATGAC
* * ** * *
9105604 ATAACAAAAGGTTATAATGATTTGACGTATAGAATTGTTCAAATAGTCATAACTATTT
1 A-AAAAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTT
9105662 TAATATAAAT
Statistics
Matches: 338, Mismatches: 58, Indels: 42
0.77 0.13 0.10
Matches are distributed among these distances:
176 27 0.08
177 41 0.12
178 6 0.02
179 12 0.04
180 94 0.28
181 49 0.14
182 106 0.31
183 3 0.01
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (176 bp):
AAAAAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTGGT
TTGGAAACAAATTTATTTTTTAAATCTAATTATTAATTTTTTAGAATATTAATAGATTAGTATTA
TTTTATTTCAAATAAGCTAGTATGAAAAAAACAATTGTTTTATGAC
Found at i:9106285 original size:44 final size:42
Alignment explanation
Indices: 9106235--9106316 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 42
9106225 AAGACTAATA
*
9106235 TATTATAA-AGTTATAATTTAATAATTTAATAAATTATATTGTGT
1 TATTATAATA-TTATAA-TAAATAATTTAA-AAATTATATTGTGT
*
9106279 TATTATAATATTATAATAAATAATTTAAACATTATATT
1 TATTATAATATTATAATAAATAATTTAAAAATTATATT
9106317 ATTTAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
42 9 0.26
43 11 0.31
44 14 0.40
45 1 0.03
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (42 bp):
TATTATAATATTATAATAAATAATTTAAAAATTATATTGTGT
Found at i:9106328 original size:42 final size:43
Alignment explanation
Indices: 9106245--9106337 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
9106235 TATTATAAAG
* * *
9106245 TTATAATTTAATAATTTAATAAATTATATTGTGTTATTATAATA
1 TTATAA-TAAATAATTTAATAAATTATATTATGTTAATATAATA
*
9106289 TTATAATAAATAATTTAA-ACATTATATTAT-TTAAATATAATA
1 TTATAATAAATAATTTAATAAATTATATTATGTT-AATATAATA
*
9106331 TAATAAT
1 TTATAAT
9106338 TATAAGTTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
41 2 0.05
42 24 0.56
43 11 0.26
44 6 0.14
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (43 bp):
TTATAATAAATAATTTAATAAATTATATTATGTTAATATAATA
Found at i:9107665 original size:15 final size:16
Alignment explanation
Indices: 9107640--9107747 Score: 58
Period size: 14 Copynumber: 7.2 Consensus size: 16
9107630 ATTAATAACT
9107640 ATATAATATTATAATTA
1 ATAT-ATATTATAATTA
*
9107657 A-ATATATTATATTTA
1 ATATATATTATAATTA
* *
9107672 ATATATA--ATTATTG
1 ATATATATTATAATTA
9107686 A-ATA-A--A-AATTA
1 ATATATATTATAATTA
*
9107697 ATTTATAATTATAAATTA
1 ATATAT-ATTAT-AATTA
9107715 ATA-ATTATTATAATTA
1 ATATA-TATTATAATTA
*
9107731 AT-TA-ATTATAATAA
1 ATATATATTATAATTA
9107745 ATA
1 ATA
9107748 GCATTAATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 24
0.68 0.09 0.23
Matches are distributed among these distances:
11 4 0.06
12 4 0.06
13 3 0.04
14 17 0.24
15 12 0.17
16 16 0.23
17 7 0.10
18 8 0.11
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (16 bp):
ATATATATTATAATTA
Found at i:9107720 original size:25 final size:25
Alignment explanation
Indices: 9107643--9107730 Score: 67
Period size: 25 Copynumber: 3.5 Consensus size: 25
9107633 AATAACTATA
* *
9107643 TAATATTATAATTA-AATATATTATATT
1 TAAT-TTATAATTATAA-AT-TAATAAT
* * *
9107670 TAATATATAATTATTGAA-TAAAAAT
1 TAATTTATAATTA-TAAATTAATAAT
9107695 TAATTTATAATTATAAATTAATAAT
1 TAATTTATAATTATAAATTAATAAT
9107720 T-A-TTATAATTA
1 TAATTTATAATTA
9107731 ATTAATTATA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
23 9 0.18
24 4 0.08
25 23 0.46
26 8 0.16
27 5 0.10
28 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (25 bp):
TAATTTATAATTATAAATTAATAAT
Found at i:9107726 original size:17 final size:18
Alignment explanation
Indices: 9107691--9107746 Score: 71
Period size: 17 Copynumber: 3.2 Consensus size: 18
9107681 TATTGAATAA
* *
9107691 AAATTAATTTATAATTAT
1 AAATTAATTAATTATTAT
9107709 AAATTAA-TAATTATTAT
1 AAATTAATTAATTATTAT
*
9107726 -AATTAATTAATTATAAT
1 AAATTAATTAATTATTAT
9107743 AAAT
1 AAAT
9107747 AGCATTAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 6 0.18
17 17 0.52
18 10 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATTAATTAATTATTAT
Found at i:9107805 original size:17 final size:17
Alignment explanation
Indices: 9107781--9107847 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 17
9107771 TAATAATATA
9107781 ATAAATAATTA-TATTT
1 ATAAATAATTATTATTT
**
9107797 ATCAAATAATGTATTAAAT
1 AT-AAATAAT-TATTATTT
9107816 ATAATAATAATTATTATTT
1 AT-A-AATAATTATTATTT
9107835 ATAAATTAATTAT
1 ATAAA-TAATTAT
9107848 AATAATAGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
16 2 0.05
17 9 0.22
18 10 0.24
19 14 0.34
20 6 0.15
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (17 bp):
ATAAATAATTATTATTT
Found at i:9107958 original size:3 final size:3
Alignment explanation
Indices: 9107950--9108020 Score: 56
Period size: 3 Copynumber: 23.7 Consensus size: 3
9107940 AATTACTATA
* ** *
9107950 ATT ATT ATT ATT ATT ATT A-T ATT ATT TTT AAAG ATT ATG ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT
* *
9107995 ATT AATT AAT ATT A-T AAT ATT ATT AT
1 ATT -ATT ATT ATT ATT ATT ATT ATT AT
9108021 ACTTTATAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
2 4 0.08
3 46 0.87
4 3 0.06
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:9107987 original size:30 final size:30
Alignment explanation
Indices: 9107953--9108020 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
9107943 TACTATAATT
* *
9107953 ATTATTATTATTATTATATTATTTTTA-AAG
1 ATTATTATTATTATTA-ATTAATATTATAAG
* *
9107983 ATTATGATTATTATTAATTAATATTATAAT
1 ATTATTATTATTATTAATTAATATTATAAG
9108013 ATTATTAT
1 ATTATTAT
9108021 ACTTTATAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTATTATTATTATTAATTAATATTATAAG
Found at i:9108046 original size:4 final size:4
Alignment explanation
Indices: 9108037--9108154 Score: 58
Period size: 4 Copynumber: 29.8 Consensus size: 4
9108027 TAATAATATA
*
9108037 AATT AATT AATT AATT AACTT AAATT AATT AATT -A-T AATT AA-T ATTT
1 AATT AATT AATT AATT AA-TT -AATT AATT AATT AATT AATT AATT AATT
* *
9108084 TATT AATAT ATTT AA-T -ATT ATATT -A-T AATT -ATAT ATATT AATAT
1 AATT AAT-T AATT AATT AATT A-ATT AATT AATT AAT-T A-ATT AAT-T
9108128 AATT -ATT AATTT GAA-T AATT AATT AAT
1 AATT AATT AA-TT -AATT AATT AATT AAT
9108155 AAAAGGTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 38
0.67 0.05 0.29
Matches are distributed among these distances:
2 3 0.03
3 15 0.17
4 47 0.53
5 18 0.20
6 6 0.07
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:9108062 original size:14 final size:13
Alignment explanation
Indices: 9108037--9108079 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 13
9108027 TAATAATATA
9108037 AATTAATT-AATT
1 AATTAATTAAATT
9108049 AATTAACTTAAATT
1 AATTAA-TTAAATT
9108063 AATTAATTATAATT
1 AATTAATTA-AATT
9108077 AAT
1 AAT
9108080 ATTTTATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.21
13 5 0.18
14 17 0.61
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTAAATT
Found at i:9108098 original size:20 final size:21
Alignment explanation
Indices: 9107983--9108108 Score: 77
Period size: 22 Copynumber: 6.0 Consensus size: 21
9107973 ATTTTTAAAG
* *
9107983 ATTATGATTATTATTA-ATTAA
1 ATTATAATTAATATTATATT-A
* *
9108004 TATTATAA-TATTATTATACTTT
1 -ATTATAATTAATATTATA-TTA
*
9108026 ATAATAATATAA-ATTA-ATTA
1 ATTATAAT-TAATATTATATTA
9108046 ATTAATTAACTTAA-ATTA-ATTA
1 ATT-A-TAA-TTAATATTATATTA
*
9108068 ATTATAATTAATATTTTATTA
1 ATTATAATTAATATTATATTA
*
9108089 A-TATATTTAATATTATATTA
1 ATTATAATTAATATTATATTA
9108109 TAATTATATA
Statistics
Matches: 86, Mismatches: 9, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
19 4 0.05
20 27 0.31
21 22 0.26
22 28 0.33
23 5 0.06
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.52
Consensus pattern (21 bp):
ATTATAATTAATATTATATTA
Found at i:9108121 original size:20 final size:19
Alignment explanation
Indices: 9108064--9108133 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 19
9108054 ACTTAAATTA
9108064 ATTAATTATAATTA-ATAT
1 ATTAATTATAATTATATAT
*
9108082 -TTTATTAATATATT-TA-AT
1 ATTAATT-ATA-ATTATATAT
9108100 ATTATATTATAATTATATAT
1 ATTA-ATTATAATTATATAT
9108120 ATTAA-TATAATTAT
1 ATTAATTATAATTAT
9108134 TAATTTGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
17 5 0.12
18 17 0.40
19 12 0.28
20 9 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTAATTATAATTATATAT
Found at i:9108137 original size:25 final size:24
Alignment explanation
Indices: 9108060--9108138 Score: 74
Period size: 23 Copynumber: 3.3 Consensus size: 24
9108050 ATTAACTTAA
*
9108060 ATTAATTA-ATTATAATTAATATTTT
1 ATTAATTATA-TAT-ATTAATATATT
* * *
9108085 ATTAA-TATATTTAATATTATATT
1 ATTAATTATATATATTAATATATT
9108108 A-TAATTATATATATTAATATAATT
1 ATTAATTATATATATTAATAT-ATT
9108132 ATTAATT
1 ATTAATT
9108139 TGAATAATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
22 3 0.07
23 21 0.49
24 8 0.19
25 11 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATTAATTATATATATTAATATATT
Found at i:9108409 original size:11 final size:11
Alignment explanation
Indices: 9108393--9108425 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
9108383 GATAATTGTA
9108393 ATAATAATATT
1 ATAATAATATT
9108404 ATAATAAT-TT
1 ATAATAATATT
9108414 ATAAT-ATATT
1 ATAATAATATT
9108424 AT
1 AT
9108426 TTATACGACG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.10
10 11 0.52
11 8 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
ATAATAATATT
Found at i:9108543 original size:26 final size:25
Alignment explanation
Indices: 9108485--9108569 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 25
9108475 ATTTACTATT
9108485 TTAATATTAAATTAATATAATATAA
1 TTAATATTAAATTAATATAATATAA
*
9108510 CTATATATTAAATTATAATATAAT-TAA
1 TTA-ATATTAAA-T-TAATATAATATAA
* *
9108537 TTAATA-TAACTGAATATAAGCTATTAA
1 TTAATATTAAATTAATATAA--TA-TAA
9108564 TTAATA
1 TTAATA
9108570 ATATTGTTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
23 7 0.14
24 1 0.02
25 6 0.12
26 11 0.22
27 15 0.31
28 9 0.18
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (25 bp):
TTAATATTAAATTAATATAATATAA
Found at i:9108785 original size:13 final size:13
Alignment explanation
Indices: 9108769--9108806 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
9108759 AATATATTAA
9108769 ATAATTATATAGT
1 ATAATTATATAGT
9108782 ATAA-TATATTAGT
1 ATAATTATA-TAGT
9108795 ATAATTTATATA
1 ATAA-TTATATA
9108807 TATGATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 4 0.18
13 12 0.55
14 2 0.09
15 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (13 bp):
ATAATTATATAGT
Found at i:9108830 original size:27 final size:27
Alignment explanation
Indices: 9108756--9108820 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 27
9108746 ATAATAAATA
*
9108756 TATAATATATTA-AATAA-TTATATAG
1 TATAATATATTAGTATAATTTATATAG
9108781 TATAATATATTAGTATAATTTATATA-
1 TATAATATATTAGTATAATTTATATAG
*
9108807 TATGATATAATTAG
1 TATAATAT-ATTAG
9108821 ATTATTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 12 0.34
26 11 0.31
27 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (27 bp):
TATAATATATTAGTATAATTTATATAG
Found at i:9108956 original size:11 final size:11
Alignment explanation
Indices: 9108940--9108966 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
9108930 TATTAATTAT
9108940 ATATAGAAATA
1 ATATAGAAATA
9108951 ATATAGAAATA
1 ATATAGAAATA
9108962 ATATA
1 ATATA
9108967 ACATAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (11 bp):
ATATAGAAATA
Found at i:9109343 original size:24 final size:25
Alignment explanation
Indices: 9109305--9109381 Score: 75
Period size: 24 Copynumber: 3.0 Consensus size: 25
9109295 TATAATAAAA
*
9109305 AAATAAATATTTAATATTATTTTAC
1 AAATAAATATATAATATTATTTTAC
*
9109330 AAAT-AATATATAATATATATTTATAT
1 AAATAAATATATAATAT-TATTT-TAC
** *
9109356 ATTTGAATAATATAATATTATTTTAC
1 AAATAAAT-ATATAATATTATTTTAC
9109382 TATTTGATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
24 11 0.26
25 9 0.21
26 6 0.14
27 8 0.19
28 9 0.21
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (25 bp):
AAATAAATATATAATATTATTTTAC
Found at i:9109368 original size:28 final size:27
Alignment explanation
Indices: 9109316--9109398 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
9109306 AATAAATATT
**
9109316 TAATATTATTTTAC-AAAT-AAT-ATA
1 TAATATTATTTTACTATTTGAATAATA
9109340 TAATATATATTTATA-TATTTGAATAATA
1 TAATAT-TATTT-TACTATTTGAATAATA
*
9109368 TAATATTATTTTACTATTTGATTAAT-
1 TAATATTATTTTACTATTTGAATAATA
9109394 TAATA
1 TAATA
9109399 ATTGTTGAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
24 6 0.12
25 5 0.10
26 11 0.22
27 19 0.38
28 9 0.18
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
TAATATTATTTTACTATTTGAATAATA
Found at i:9110168 original size:32 final size:31
Alignment explanation
Indices: 9110126--9110201 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 31
9110116 TTTAATATAA
9110126 AATAA-TATTAATTTA-ATAT-TTATAAATTAT
1 AATAATTATTAATTTATA-ATCTTAT-AATTAT
9110156 ATATAATTATTAATTTATAATCTTATAATTAT
1 A-ATAATTATTAATTTATAATCTTATAATTAT
*
9110188 AATATATTAATAAT
1 AATA-ATTATTAAT
9110202 AATGTGATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
30 1 0.03
31 7 0.17
32 27 0.68
33 5 0.12
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (31 bp):
AATAATTATTAATTTATAATCTTATAATTAT
Found at i:9110171 original size:25 final size:29
Alignment explanation
Indices: 9110143--9110198 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 29
9110133 TTAATTTAAT
9110143 ATTTATAA-ATTAT-A-TATAAT-TATTA
1 ATTTATAATATTATAATTATAATATATTA
*
9110168 ATTTATAATCTTATAATTATAATATATTA
1 ATTTATAATATTATAATTATAATATATTA
9110197 AT
1 AT
9110199 AATAATGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 8 0.31
26 4 0.15
27 1 0.04
28 6 0.23
29 7 0.27
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (29 bp):
ATTTATAATATTATAATTATAATATATTA
Found at i:9110651 original size:29 final size:28
Alignment explanation
Indices: 9110619--9110746 Score: 75
Period size: 28 Copynumber: 4.5 Consensus size: 28
9110609 TCTAATTTAG
9110619 ATTATATATAATTAAGAATATTAAAATAT
1 ATTATAT-TAATTAAGAATATTAAAATAT
* * * *
9110648 ATTAT-CTAA-TAATATTTATATTATATTAT
1 ATTATATTAATTAAGA---ATATTAAAATAT
*
9110677 ATTAT-TTAATTAATGAATATTTAAATAT
1 ATTATATTAATTAA-GAATATTAAAATAT
* * * * *
9110705 -TAATATTAATTATATATTTTTTAAATAT
1 ATTATATTAATTA-AGAATATTAAAATAT
9110733 ATTATAATTAATTA
1 ATTAT-ATTAATTA
9110747 TAATATAAGT
Statistics
Matches: 76, Mismatches: 14, Indels: 17
0.71 0.13 0.16
Matches are distributed among these distances:
26 4 0.05
27 6 0.08
28 27 0.36
29 27 0.36
30 11 0.14
31 1 0.01
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.51
Consensus pattern (28 bp):
ATTATATTAATTAAGAATATTAAAATAT
Found at i:9110682 original size:19 final size:19
Alignment explanation
Indices: 9110645--9110688 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
9110635 AATATTAAAA
*
9110645 TATATTATCTAATAATATT
1 TATATTATATAATAATATT
* *
9110664 TATATTATATTATATTATT
1 TATATTATATAATAATATT
9110683 TA-ATTA
1 TATATTA
9110689 ATGAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATTATATAATAATATT
Found at i:9111026 original size:21 final size:22
Alignment explanation
Indices: 9110977--9111027 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
9110967 ATAGTTATAG
*
9110977 TAATAA-ATATTATTAGTACTAT
1 TAATAATA-ATTATTAGAACTAT
*
9110999 T-AGAATAATTATTA-AACTAT
1 TAATAATAATTATTAGAACTAT
9111019 TAATAATAA
1 TAATAATAA
9111028 CAAATAAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
20 6 0.25
21 16 0.67
22 2 0.08
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (22 bp):
TAATAATAATTATTAGAACTAT
Found at i:9112651 original size:37 final size:37
Alignment explanation
Indices: 9112535--9112651 Score: 100
Period size: 37 Copynumber: 3.1 Consensus size: 37
9112525 TTTGTATAAC
* * *
9112535 ATATTAA-ATAAATATATAATTGATTATAAATTAATTTA
1 ATATTAATATAAATATTTAATTAATT-TAATTTAA-TTA
*
9112573 A-ATTAATA-ATAATA-TT-ATTAATTTATATTACTATTTAA
1 ATATTAATATA-AATATTTAATTAATTTA-ATT--TAATT-A
9112611 ATATTAATATAAATATTTAATTAATTTAATTTAATTA
1 ATATTAATATAAATATTTAATTAATTTAATTTAATTA
9112648 ATAT
1 ATAT
9112652 ATTATCAATT
Statistics
Matches: 64, Mismatches: 5, Indels: 21
0.71 0.06 0.23
Matches are distributed among these distances:
35 2 0.03
36 8 0.12
37 14 0.22
38 14 0.22
39 11 0.17
40 6 0.09
41 9 0.14
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (37 bp):
ATATTAATATAAATATTTAATTAATTTAATTTAATTA
Found at i:9112705 original size:25 final size:25
Alignment explanation
Indices: 9112658--9112705 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9112648 ATATATTATC
* * *
9112658 AATTAATATCATAATTATGATAATT
1 AATTAATAGCATAATAATAATAATT
9112683 AATTAATAGCATAATAATAATAA
1 AATTAATAGCATAATAATAATAA
9112706 GAAAAAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (25 bp):
AATTAATAGCATAATAATAATAATT
Found at i:9112758 original size:14 final size:15
Alignment explanation
Indices: 9112739--9112774 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
9112729 AATAGAATAT
9112739 TTAATTTA-ATTTAA
1 TTAATTTATATTTAA
9112753 TTAA-TTATATTTAA
1 TTAATTTATATTTAA
9112767 -TAATTTAT
1 TTAATTTAT
9112775 CATAAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTAATTTATATTTAA
Found at i:9113067 original size:176 final size:177
Alignment explanation
Indices: 9112821--9113159 Score: 438
Period size: 176 Copynumber: 1.9 Consensus size: 177
9112811 AATAATTTTG
* ** * *
9112821 ATTTATTAATATTTTAAAAATTAATAAGAGATTTAAAACCTAAATCTATTTACTAAACTAGTTCA
1 ATTTAATAATATTTTAAAAATTAATAAGAGATTTAAAAAATAAATATATTTACCAAACTAGTTCA
**
9112886 AATAGTTATA-ACTATTTGAACAATTATCTATCTCAAATCATAATGAT-CTTTCT-TTT-GTCAT
66 AATAGTTA-AGACTATCAGAACAATTATCTATCTCAAATCATAAT-ATACTTT-TGTTTAGTCAT
* * **
9112947 ACAACAATTGTTTCCTTTCATACAAGCTTATTTGGATTTAAATGATACTA
128 AAAACAATTATTTCAGTTCATACAAGCTTATTTGGATTTAAATGATACTA
*
9112997 ATTTAATAATA-TTTCAAAATTAATAAGAGATTTAAAAAATAAA-ATATGTTAGCCAAACTAGTT
1 ATTTAATAATATTTTAAAAATTAATAAGAGATTTAAAAAATAAATATAT-TTA-CCAAACTAGTT
* * **
9113060 CAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATTCTATACTTTTGTTTAGTCATA
64 CAAATAGTTAAGACTATCAGAACAATTATCTATCTCAAATCATAATATACTTTTGTTTAGTCATA
*
9113125 AAACAATTATTTTAGTTCATACAAGCTTATTTGGA
129 AAACAATTATTTCAGTTCATACAAGCTTATTTGGA
9113160 ATAAAATTAG
Statistics
Matches: 140, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
174 3 0.02
175 36 0.26
176 65 0.46
177 36 0.26
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (177 bp):
ATTTAATAATATTTTAAAAATTAATAAGAGATTTAAAAAATAAATATATTTACCAAACTAGTTCA
AATAGTTAAGACTATCAGAACAATTATCTATCTCAAATCATAATATACTTTTGTTTAGTCATAAA
ACAATTATTTCAGTTCATACAAGCTTATTTGGATTTAAATGATACTA
Found at i:9113304 original size:23 final size:22
Alignment explanation
Indices: 9113261--9113308 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
9113251 TATGAATAAT
*
9113261 AATAATAATATATAATCTATTA
1 AATAATAATAAATAATCTATTA
*
9113283 AATAATAATTAAATAATTTATTA
1 AATAATAA-TAAATAATCTATTA
9113306 AAT
1 AAT
9113309 TTAATACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATAATAATAAATAATCTATTA
Found at i:9113496 original size:17 final size:18
Alignment explanation
Indices: 9113457--9113527 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
9113447 AAATTTATAA
*
9113457 TAATA-TAATTAAATATTA
1 TAATATTAATT-AATATTT
* *
9113475 AAATATTAA-TCATATTT
1 TAATATTAATTAATATTT
9113492 TAATATTAATTAATATTT
1 TAATATTAATTAATATTT
* *
9113510 TAATTATTGACTAATATT
1 TAA-TATTAATTAATATT
9113528 ATAGGATAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
17 13 0.30
18 15 0.35
19 15 0.35
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (18 bp):
TAATATTAATTAATATTT
Found at i:9113524 original size:19 final size:18
Alignment explanation
Indices: 9113476--9113527 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
9113466 TAAATATTAA
*
9113476 AATATTAA-TCATATTTT
1 AATATTAACTAATATTTT
*
9113493 AATATTAATTAATATTTT
1 AATATTAACTAATATTTT
*
9113511 AATTATTGACTAATATT
1 AA-TATTAACTAATATT
9113528 ATAGGATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 8 0.27
18 10 0.33
19 12 0.40
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (18 bp):
AATATTAACTAATATTTT
Found at i:9113672 original size:17 final size:17
Alignment explanation
Indices: 9113652--9113713 Score: 53
Period size: 17 Copynumber: 3.9 Consensus size: 17
9113642 CTATTGAATA
9113652 ATATATATTATTTTATT
1 ATATATATTATTTTATT
* *
9113669 ATATAGA-TATTTAACTT
1 ATATATATTATTTTA-TT
9113686 ATA-ATATTA--TTATT
1 ATATATATTATTTTATT
*
9113700 ATAAAT-TTATTTTA
1 ATATATATTATTTTA
9113714 AATTAATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 11
0.71 0.08 0.22
Matches are distributed among these distances:
14 8 0.22
15 4 0.11
16 11 0.31
17 13 0.36
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (17 bp):
ATATATATTATTTTATT
Found at i:9113810 original size:20 final size:22
Alignment explanation
Indices: 9113785--9113827 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
9113775 TAAGCAATTG
*
9113785 TTATAATTTAT-ATT-AATTAA
1 TTATAATGTATCATTGAATTAA
9113805 TTATAATGTATCATTGAATTAA
1 TTATAATGTATCATTGAATTAA
9113827 T
1 T
9113828 GAAGTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (22 bp):
TTATAATGTATCATTGAATTAA
Found at i:9114065 original size:19 final size:20
Alignment explanation
Indices: 9114041--9114081 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
9114031 AAGTTGTATA
*
9114041 ATTAATTTAA-AAATTAATT
1 ATTAATATAACAAATTAATT
*
9114060 ATTAATATAACAATTTAATT
1 ATTAATATAACAAATTAATT
9114080 AT
1 AT
9114082 CCAGTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTAATATAACAAATTAATT
Found at i:9114121 original size:17 final size:16
Alignment explanation
Indices: 9114101--9114156 Score: 62
Period size: 17 Copynumber: 3.5 Consensus size: 16
9114091 ATATTATTAA
9114101 TATAATTATATTATAAT
1 TATAATTA-ATTATAAT
*
9114118 TATAAGTAA-TA-AAT
1 TATAATTAATTATAAT
*
9114132 TATAAGTAATTAATAAT
1 TATAATTAATT-ATAAT
9114149 TATAATTA
1 TATAATTA
9114157 CTACAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 12 0.35
15 3 0.09
16 2 0.06
17 17 0.50
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (16 bp):
TATAATTAATTATAAT
Found at i:9114132 original size:14 final size:14
Alignment explanation
Indices: 9114115--9114141 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9114105 ATTATATTAT
9114115 AATTATAAGTAATA
1 AATTATAAGTAATA
9114129 AATTATAAGTAAT
1 AATTATAAGTAAT
9114142 TAATAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (14 bp):
AATTATAAGTAATA
Found at i:9114546 original size:21 final size:21
Alignment explanation
Indices: 9114507--9114559 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
9114497 AGTATTTATA
*
9114507 TAATAAATAATACTAATAAATT
1 TAATAAATTATACTAAT-AATT
9114529 T-ATAAATTATA-TATATAATT
1 TAATAAATTATACTA-ATAATT
9114549 TAATATAATTA
1 TAATA-AATTA
9114560 ATAGTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 7 0.26
21 14 0.52
22 6 0.22
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATAAATTATACTAATAATT
Found at i:9114573 original size:25 final size:24
Alignment explanation
Indices: 9114544--9114590 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
9114534 ATTATATATA
9114544 TAATT-TAATATAATTAATAGTTAAT
1 TAATTATAATAT-ATTAAT-GTTAAT
*
9114569 TAATTATATTATATTAATGTTA
1 TAATTATAATATATTAATGTTA
9114591 TAAACTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 4 0.20
25 11 0.55
26 5 0.25
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TAATTATAATATATTAATGTTAAT
Found at i:9114601 original size:27 final size:27
Alignment explanation
Indices: 9114569--9114626 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
9114559 AATAGTTAAT
*
9114569 TAATTATATTATATTAATGTTA-TAAAC
1 TAATTATATTATA-TAATATTATTAAAC
* *
9114596 TAATTATTTTATATATTATTATTAAAC
1 TAATTATATTATATAATATTATTAAAC
9114623 TAAT
1 TAAT
9114627 ATCTAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (27 bp):
TAATTATATTATATAATATTATTAAAC
Found at i:9114708 original size:34 final size:34
Alignment explanation
Indices: 9114639--9114709 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
9114629 CTAATTAACT
* *
9114639 ATTAATAATATTATTAATAATAATAAATGATTAA
1 ATTAATAATATTATTAATAATAAAAAATGAATAA
9114673 ATTAAT-ATAATTATTAATAATAAAATAAT-AATAA
1 ATTAATAAT-ATTATTAATAATAAAA-AATGAATAA
9114707 ATT
1 ATT
9114710 TATTTACTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 2 0.06
34 28 0.85
35 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (34 bp):
ATTAATAATATTATTAATAATAAAAAATGAATAA
Found at i:9115081 original size:10 final size:10
Alignment explanation
Indices: 9115066--9115104 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
9115056 ATTAACACTA
9115066 AATAATTAAT
1 AATAATTAAT
9115076 AATAATTAAT
1 AATAATTAAT
*
9115086 AATATTTTAATT
1 AATA-ATTAA-T
9115098 AATAATT
1 AATAATT
9115105 TAATTACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 14 0.56
11 6 0.24
12 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AATAATTAAT
Found at i:9116261 original size:20 final size:20
Alignment explanation
Indices: 9116212--9116262 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
9116202 TTATCATTAA
9116212 TAATAATTATTTAACTATAT
1 TAATAATTATTTAACTATAT
* *
9116232 TATTATTTATTATAA-TA-ATT
1 TAATAATTATT-TAACTATA-T
9116252 TAATAATTATT
1 TAATAATTATT
9116263 GAAATATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATAATTATTTAACTATAT
Found at i:9117325 original size:36 final size:37
Alignment explanation
Indices: 9117261--9117343 Score: 91
Period size: 36 Copynumber: 2.3 Consensus size: 37
9117251 ATAATTATAA
* *
9117261 ATATTATTA-A-TATTACTTATTATAATATATAAATT
1 ATATTATTAGATTAGTACTTATTATAATATAGAAATT
* *
9117296 ATATTATTAGATTAGTA-TTATTATTATATAGATATT
1 ATATTATTAGATTAGTACTTATTATAATATAGAAATT
**
9117332 ATAAAATTAGAT
1 ATATTATTAGAT
9117344 AAATAATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
35 9 0.22
36 27 0.68
37 4 0.10
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (37 bp):
ATATTATTAGATTAGTACTTATTATAATATAGAAATT
Found at i:9117394 original size:14 final size:14
Alignment explanation
Indices: 9117377--9117420 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 14
9117367 TTTACTAGTT
9117377 ATTATTATATATAA
1 ATTATTATATATAA
9117391 ATTA-TA-ATATAA
1 ATTATTATATATAA
9117403 ATT-TTAT-T-TAA
1 ATTATTATATATAA
9117414 ATTATTA
1 ATTATTA
9117421 ATTAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
11 6 0.22
12 15 0.56
13 2 0.07
14 4 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTATTATATATAA
Found at i:9117402 original size:12 final size:11
Alignment explanation
Indices: 9117380--9117418 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9117370 ACTAGTTATT
9117380 ATTATATATAA
1 ATTATATATAA
9117391 ATTATAATATAA
1 ATTAT-ATATAA
* *
9117403 ATTTTATTTAA
1 ATTATATATAA
9117414 ATTAT
1 ATTAT
9117419 TAATTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATTATATATAA
Found at i:9118552 original size:20 final size:20
Alignment explanation
Indices: 9118524--9118565 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
9118514 GGTTATAACC
9118524 AATACTTTAT-TAATAATAAT
1 AATACTTTATAT-ATAATAAT
*
9118544 AATATTTTATATATAATAAT
1 AATACTTTATATATAATAAT
9118564 AA
1 AA
9118566 ATTAATAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
AATACTTTATATATAATAAT
Found at i:9118790 original size:44 final size:42
Alignment explanation
Indices: 9118740--9118888 Score: 115
Period size: 42 Copynumber: 3.4 Consensus size: 42
9118730 AAGACTAATA
*
9118740 TATTATAA-ATTTATAATTTAATAATTTAATAAATTATATTGTAT
1 TATTATAATA-TTATAA-TAAATAATTTAA-AAATTATATTGTAT
* *
9118784 TATTATAATATTATAATAAATAATTTAAAGATTATATTAT-T
1 TATTATAATATTATAATAAATAATTTAAAAATTATATTGTAT
* * * * *
9118825 TAAATATAATATAATAAT-TATAAGTTAATATATTAATATTGTTAT
1 T-ATTATAATATTATAATAAATAATTTAA-AAATT-ATATTG-TAT
* *
9118870 TATTTTATTATTCATAATA
1 TATTATAATATT-ATAATA
9118889 TAAAATAATT
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
41 10 0.12
42 28 0.33
43 16 0.19
44 22 0.26
45 8 0.10
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (42 bp):
TATTATAATATTATAATAAATAATTTAAAAATTATATTGTAT
Found at i:9119044 original size:16 final size:17
Alignment explanation
Indices: 9119023--9119055 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9119013 AGTTTTTACA
9119023 ATTTC-AATAATTATTT
1 ATTTCAAATAATTATTT
*
9119039 ATTTCAAATCATTATTT
1 ATTTCAAATAATTATTT
9119056 GTTTTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTCAAATAATTATTT
Found at i:9119888 original size:26 final size:26
Alignment explanation
Indices: 9119859--9119922 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 26
9119849 TATTTATAGC
9119859 AATAATTTATTAAA-ATTAAATAATTA
1 AATAATTTATTAAAGATTAAA-AATTA
* *
9119885 AATAATTAATTAAAGATTATAAATTA
1 AATAATTTATTAAAGATTAAAAATTA
9119911 AATAGATTTATT
1 AATA-ATTTATT
9119923 TTTTAAATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 22 0.67
27 11 0.33
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
AATAATTTATTAAAGATTAAAAATTA
Found at i:9120128 original size:16 final size:16
Alignment explanation
Indices: 9120109--9120142 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9120099 ATTAATATGC
* *
9120109 TAATTTTATAATTAAT
1 TAATTTAATAATAAAT
9120125 TAATTTAATAATAAAT
1 TAATTTAATAATAAAT
9120141 TA
1 TA
9120143 TTAAATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTTAATAATAAAT
Found at i:9120166 original size:34 final size:34
Alignment explanation
Indices: 9120114--9120188 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
9120104 TATGCTAATT
9120114 TTATAATTAATTAATTTAATAATAAATT-ATTAAA
1 TTATAATTAATTAATTTAATAATAAATTGA-TAAA
* *
9120148 TTATAATTATATT-GTTTAATATTAAATTGATAAA
1 TTATAATTA-ATTAATTTAATAATAAATTGATAAA
9120182 TTATAAT
1 TTATAAT
9120189 AATCTAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
34 33 0.89
35 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (34 bp):
TTATAATTAATTAATTTAATAATAAATTGATAAA
Done.