Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 51 of 121
Found at i:9120530 original size:14 final size:14
Alignment explanation
Indices: 9120473--9120530 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
9120463 TAGATTATAA
**
9120473 AATATAATTTTTAT
1 AATATAATAATTAT
9120487 AAT-T-AT-ATTAT
1 AATATAATAATTAT
*
9120498 AATATATATAATATGT
1 AATATA-ATAAT-TAT
9120514 AATATAATAATTAT
1 AATATAATAATTAT
9120528 AAT
1 AAT
9120531 GGTTTAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
11 7 0.19
12 3 0.08
13 1 0.03
14 10 0.28
15 7 0.19
16 8 0.22
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
AATATAATAATTAT
Found at i:9120850 original size:6 final size:6
Alignment explanation
Indices: 9120813--9120837 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9120803 AACTATTAAT
9120813 AATATA AATATA AATATA AATATA A
1 AATATA AATATA AATATA AATATA A
9120838 TTTAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AATATA
Found at i:9121074 original size:16 final size:16
Alignment explanation
Indices: 9121055--9121093 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
9121045 AATTAATAAT
9121055 ATAATTAATTTATATA
1 ATAATTAATTTATATA
*
9121071 ATAATCAATTTATATA
1 ATAATTAATTTATATA
*
9121087 ATTATTA
1 ATAATTA
9121094 TATAATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATTAATTTATATA
Found at i:9121096 original size:11 final size:11
Alignment explanation
Indices: 9121080--9121105 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
9121070 AATAATCAAT
9121080 TTATATAATTA
1 TTATATAATTA
9121091 TTATATAATTA
1 TTATATAATTA
9121102 TTAT
1 TTAT
9121106 TATTATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TTATATAATTA
Found at i:9121184 original size:28 final size:30
Alignment explanation
Indices: 9121148--9121222 Score: 82
Period size: 28 Copynumber: 2.5 Consensus size: 30
9121138 TATTTAAACT
*
9121148 TAAAGTTATAATTAT-TAAACTATTA-ATA
1 TAAAATTATAATTATATAAACTATTATATA
* *
9121176 TAAATTTATAATTTATAATAAATTATTATATA
1 TAAAATTATAA-TTAT-ATAAACTATTATATA
9121208 TAATAATTATAATTA
1 TAA-AATTATAATTA
9121223 ATTATATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
28 10 0.26
29 4 0.10
31 9 0.23
32 9 0.23
33 7 0.18
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
TAAAATTATAATTATATAAACTATTATATA
Found at i:9121209 original size:17 final size:17
Alignment explanation
Indices: 9121175--9121220 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
9121165 AACTATTAAT
*
9121175 ATAAATTTATAATTTATA
1 ATAAA-TTATAATATATA
*
9121193 ATAAATTATTATATATA
1 ATAAATTATAATATATA
9121210 AT-AATTATAAT
1 ATAAATTATAAT
9121221 TAATTATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 8 0.32
17 12 0.48
18 5 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAAATTATAATATATA
Found at i:9121519 original size:21 final size:21
Alignment explanation
Indices: 9121495--9121534 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9121485 TAAATTATAT
* *
9121495 TAATAGTAATTATTATTAACA
1 TAATAATAATCATTATTAACA
*
9121516 TAATAATTATCATTATTAA
1 TAATAATAATCATTATTAA
9121535 ACAAATTTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (21 bp):
TAATAATAATCATTATTAACA
Found at i:9121721 original size:9 final size:9
Alignment explanation
Indices: 9121707--9121739 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
9121697 ATTAACAATA
9121707 ATTTATAAT
1 ATTTATAAT
9121716 ATTTATAAT
1 ATTTATAAT
*
9121725 ATAT-TAAT
1 ATTTATAAT
9121733 ATTTATA
1 ATTTATA
9121740 CTAAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
ATTTATAAT
Found at i:9121870 original size:19 final size:18
Alignment explanation
Indices: 9121843--9121914 Score: 60
Period size: 19 Copynumber: 4.1 Consensus size: 18
9121833 AGTTTTAAAT
*
9121843 TATTTTAATATAATTATTA
1 TATTATAATAT-ATTATTA
9121862 TATTAT-A-ATATTATT-
1 TATTATAATATATTATTA
*
9121877 TTTTATAATATATTATTAA
1 TATTATAATATATTATT-A
* * *
9121896 TAGTATTATAAATTATTA
1 TATTATAATATATTATTA
9121914 T
1 T
9121915 TAACAAATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
15 5 0.12
16 7 0.16
17 10 0.23
18 3 0.07
19 18 0.42
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (18 bp):
TATTATAATATATTATTA
Found at i:9122081 original size:6 final size:6
Alignment explanation
Indices: 9122062--9122114 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
9122052 TGTTATAAAT
*
9122062 TATTAA AATT-A TATTAA TATTAA TA-TAA T-TTAA GTATTAA TATTAA
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA -TATTAA TATTAA
9122108 TTATTAA
1 -TATTAA
9122115 ATAACTTGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
5 11 0.28
6 19 0.47
7 10 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (6 bp):
TATTAA
Found at i:9122082 original size:17 final size:18
Alignment explanation
Indices: 9122062--9122110 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
9122052 TGTTATAAAT
*
9122062 TATTAAAATTATATTAA-
1 TATTAATATTATATTAAG
*
9122079 TATTAATATAAT-TTAAG
1 TATTAATATTATATTAAG
9122096 TATTAATATTA-ATTA
1 TATTAATATTATATTA
9122111 TTAAATAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 4 0.15
17 23 0.85
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TATTAATATTATATTAAG
Found at i:9122110 original size:27 final size:25
Alignment explanation
Indices: 9122072--9122157 Score: 63
Period size: 25 Copynumber: 3.4 Consensus size: 25
9122062 TATTAAAATT
*
9122072 ATATTAATATTAATATAATTTAAGTATTA
1 ATATTAA-ATTAAT-TAATATAA-T-TTA
* *
9122101 ATATT-AATT-ATTAA-ATAACTTG
1 ATATTAAATTAATTAATATAATTTA
*
9122123 ATTTTAAATTAATTAATATAATCTT-
1 ATATTAAATTAATTAATATAAT-TTA
9122148 ATATTAAATT
1 ATATTAAATT
9122158 GATAATACTA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
22 6 0.13
23 4 0.09
24 8 0.17
25 16 0.34
26 4 0.09
27 3 0.06
28 1 0.02
29 5 0.11
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (25 bp):
ATATTAAATTAATTAATATAATTTA
Found at i:9122290 original size:26 final size:25
Alignment explanation
Indices: 9122251--9122397 Score: 88
Period size: 26 Copynumber: 5.6 Consensus size: 25
9122241 CGTCTCCATT
*
9122251 TAAATATTAAATTATTTAATTAATA
1 TAAATATTAAATTATATAATTAATA
*
9122276 TAAATATTACTATTATATAATTAATA
1 TAAATATTA-AATTATATAATTAATA
* * *
9122302 GT-TATTTTAATAATTATTTAAATTAAT-
1 -TAAATATT-A-AATTATAT-AATTAATA
*
9122329 TAAATAATTTAATTATAT-ATT-ATA
1 TAAAT-ATTAAATTATATAATTAATA
9122353 TAATAGTTATTAAATTAGTATAAATTAAT-
1 TAA-A--TATTAAATTA-TAT-AATTAATA
9122382 TAATATATTATAATTA
1 TAA-ATATTA-AATTA
9122398 ATTAATAATA
Statistics
Matches: 95, Mismatches: 12, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
23 2 0.02
24 6 0.06
25 10 0.11
26 34 0.36
27 19 0.20
28 14 0.15
29 8 0.08
30 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (25 bp):
TAAATATTAAATTATATAATTAATA
Found at i:9122337 original size:40 final size:41
Alignment explanation
Indices: 9122287--9122413 Score: 104
Period size: 41 Copynumber: 3.1 Consensus size: 41
9122277 AAATATTACT
*
9122287 ATTATATAATTAATAGT-TATT-T-TAATAATTATTTAAATTA
1 ATTAAATAATTAATA-TATATTATATAATAATTA-TTAAATTA
*
9122327 ATTAAATAATTTAATTATATATTATATAATAGTTATTAAATTA
1 ATTAAATAA-TTAA-TATATATTATATAATAATTATTAAATTA
* * *
9122370 GTATAAATTAATT-A-ATATATTATA-ATTAATTAATAATATTA
1 AT-TAAA-TAATTAATATATATTATATAATAATTATTAA-ATTA
9122411 ATT
1 ATT
9122414 TATTAATATT
Statistics
Matches: 72, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
40 18 0.25
41 20 0.28
42 6 0.08
43 11 0.15
44 14 0.19
45 3 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (41 bp):
ATTAAATAATTAATATATATTATATAATAATTATTAAATTA
Found at i:9122344 original size:53 final size:54
Alignment explanation
Indices: 9122260--9122363 Score: 135
Period size: 53 Copynumber: 1.9 Consensus size: 54
9122250 TTAAATATTA
9122260 AATTATTTAATTAATATAAATATTACTATTATATA-AT-TAATAGTTATTTTAAT
1 AATTATTTAATTAATATAAATATTAC-ATTATATATATATAATAGTTATTTTAAT
9122313 AATTATTTAAATTAAT-TAAATAATTTA-ATTATATATTATATAATAGTTATT
1 AATTATTT-AATTAATATAAAT-A-TTACATTATATA-TATATAATAGTTATT
9122364 AAATTAGTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
53 21 0.47
54 8 0.18
55 5 0.11
56 11 0.24
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (54 bp):
AATTATTTAATTAATATAAATATTACATTATATATATATAATAGTTATTTTAAT
Found at i:9122363 original size:44 final size:41
Alignment explanation
Indices: 9122293--9122410 Score: 100
Period size: 40 Copynumber: 2.8 Consensus size: 41
9122283 TACTATTATA
* *
9122293 TAATTAATAGTTATT-T-TAATAATTATTTAAATTAATTAAATAATT
1 TAATTAATA--TATTATATAATAATTA-TTAAATT-AGT--ATAAAT
*
9122338 TAATT-ATATATTATATAATAGTTATTAAATTAGTATAAAT
1 TAATTAATATATTATATAATAATTATTAAATTAGTATAAAT
* *
9122378 TAATTAATATATTATA-ATTAATTAATAATATTA
1 TAATTAATATATTATATAATAATTATTAA-ATTA
9122411 ATTTATTAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
40 19 0.30
41 14 0.22
42 6 0.10
43 8 0.13
44 11 0.17
45 5 0.08
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (41 bp):
TAATTAATATATTATATAATAATTATTAAATTAGTATAAAT
Found at i:9122391 original size:22 final size:21
Alignment explanation
Indices: 9122327--9122408 Score: 64
Period size: 22 Copynumber: 4.0 Consensus size: 21
9122317 ATTTAAATTA
* *
9122327 ATTAAATAATTTAATT-ATAT
1 ATTATATAAATTAATTAATAT
* * *
9122347 ATTATAT-AA-TAGTTATTAA
1 ATTATATAAATTAATTAATAT
9122366 ATTAGTATAAATTAATTAATAT
1 ATTA-TATAAATTAATTAATAT
*
9122388 ATTATAATTAATTAA-TAATAT
1 ATTAT-ATAAATTAATTAATAT
9122409 TAATTTATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 9
0.73 0.14 0.14
Matches are distributed among these distances:
18 4 0.08
19 7 0.15
20 9 0.19
21 9 0.19
22 19 0.40
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATTATATAAATTAATTAATAT
Found at i:9122783 original size:15 final size:16
Alignment explanation
Indices: 9122752--9122789 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
9122742 ATATACCAAT
9122752 AATTATATATAAATTA
1 AATTATATATAAATTA
9122768 AATTATATAT-AATTA
1 AATTATATATAAATTA
9122783 AATTATA
1 AATTATA
9122790 AATATTGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTATATATAAATTA
Found at i:9122931 original size:23 final size:22
Alignment explanation
Indices: 9122897--9122939 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
9122887 GAATTTTAAT
9122897 AATTAAAGTTATAAGATATTATA
1 AATTAAAGTTATAAG-TATTATA
*
9122920 AATTAATA-TTATTAGTATTA
1 AATTAA-AGTTATAAGTATTA
9122940 GAATAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 5 0.28
23 12 0.67
24 1 0.06
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (22 bp):
AATTAAAGTTATAAGTATTATA
Found at i:9123057 original size:17 final size:16
Alignment explanation
Indices: 9123019--9123064 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 16
9123009 TATTAATGTA
9123019 ATAAATTATTATAA-TT
1 ATAAA-TATTATAATTT
9123035 AT-AATATTATAATTT
1 ATAAATATTATAATTT
9123050 AGTAAATATT-TAATT
1 A-TAAATATTATAATT
9123065 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 8 0.30
15 5 0.19
16 8 0.30
17 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATAAATATTATAATTT
Found at i:9123084 original size:12 final size:12
Alignment explanation
Indices: 9122979--9123124 Score: 51
Period size: 12 Copynumber: 12.2 Consensus size: 12
9122969 TTGCTAAATC
9122979 TTATAA-AATTAA
1 TTATAATAATT-A
*
9122991 TAATAAT-ATGTA
1 TTATAATAAT-TA
*
9123003 TTATTAT-ATTA
1 TTATAATAATTA
* *
9123014 ATGTAATAAATTA
1 TTATAAT-AATTA
*
9123027 TTATAATTATAATA
1 TTATAA-TA-ATTA
9123041 TTATAAT--TTA
1 TTATAATAATTA
* *
9123051 GTA-AATATTTAA
1 TTATAATAATT-A
9123063 TTA-AAT-ATTA
1 TTATAATAATTA
9123073 TTATAATAATTA
1 TTATAATAATTA
9123085 TTAGTTAATAATTGA
1 TTA--TAATAATT-A
*
9123100 -TATAAAAATTA
1 TTATAATAATTA
*
9123111 AT-TAATAAATTA
1 TTATAAT-AATTA
9123123 TT
1 TT
9123125 TTTTTTGAAA
Statistics
Matches: 102, Mismatches: 16, Indels: 32
0.68 0.11 0.21
Matches are distributed among these distances:
9 3 0.03
10 8 0.08
11 17 0.17
12 42 0.41
13 11 0.11
14 20 0.20
15 1 0.01
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
TTATAATAATTA
Found at i:9123427 original size:182 final size:179
Alignment explanation
Indices: 9123119--9124046 Score: 794
Period size: 182 Copynumber: 5.2 Consensus size: 179
9123109 TAATTAATAA
* * * *
9123119 ATTATTTTTTTTGAAATAAGCTT-TCATGAAC-AAAACCAATTGTTTTATGACAAAACATAAA-G
1 ATTATTTTATTCG-AATAAGCTTGT-ATGAACTGAAA-CAATTCTTTTATGACAAAACA-AAAGG
** ** * * * * *
9123181 TCATAATGTTTTGTGATAGATAATTGTTCAGATAGTCATAACTATTTGAACTTATTCGGTAAACA
62 TCATAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACA
*
9123246 AATTCTTTTTTTTAATTCTCTTACTCATTAATTTTTAGAATATTAATAAATTAGT
127 AATT-TTTTTTTTAATTCTTTTACTCATTAATTTTTA-AATATTAATAAATTAGT
* * * * *
9123301 ATTATTTTACTTCGAATAAGTTTGTATGAACTGAAATAATTCTTTTATTACAAAAGAAAATGTCA
1 ATTATTTTA-TTCGAATAAGCTTGTATGAACTGAAACAATTCTTTTATGACAAAACAAAAGGTCA
* *
9123366 TAATAATTTGAAATAGATAATTATTTAAATGGTCATCACTATTTGAACTTGATTC-GTAAAC--A
65 TAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTG-TTCAGTAAACAAA
* * *
9123428 TTTATTTTTTAAATT-TTTTA--C-TT-A--TTAAAATATTAATAAATTAAT
129 TTT-TTTTTTTAATTCTTTTACTCATTAATTTTTAAATATTAATAAATTAGT
* * * * *
9123473 ATTATTTTATTTGAATAAACTTGTATGAA-TAGAAACAATTGTTTTATGACAAAATAAAAAGTCA
1 ATTATTTTATTCGAATAAGCTTGTATGAACT-GAAACAATTCTTTTATGACAAAACAAAAGGTCA
** * * ** * * *
9123537 TAGCAAGTTGAAATAAATAATTGCTTAAATAGTCATAACGATTTGAACTTGTTTAGCAAACAAAT
65 TAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAAT
* * * *
9123602 TTATTTTTTAAATCTTTTACTTATTAATTGTCTT-AATATTAATAAATTTGT
130 TTTTTTTTTAATTCTTTTACTCATTAATT-T-TTAAATATTAATAAATTAGT
* * *
9123653 ATTATTTTATTTGAAATAAGCTTGTATGAAC--AAAAAATTTTATTTTATGACAAAACAAAAGGT
1 ATTATTTTATTCG-AATAAGCTTGTATGAACTGAAACAA--TTCTTTTATGACAAAACAAAAGGT
* * * * * * * *
9123716 TATAGTGATTTCAAATAAATAATTATTTAAATAGTCATAATTA-TTGAAAATTGTTCAATAAACA
63 CATAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTG-AACTTGTTCAGTAAACA
* ** * ** * * *
9123780 GATTCATTTTTTAAATCTTTTTTGTCATTACTTTTTAGATTATTATTAAATTAGT
127 AATTTTTTTTTTAATTC-TTTTACTCATTAATTTTTA-AATATTAATAAATTAGT
* * *
9123835 ATTAATTTATTTCGAATAAGCTTATATGAACTGAAACAATTCTTTTATGACAAAACAGAAGGTCA
1 ATTATTTTA-TTCGAATAAGCTTGTATGAACTGAAACAATTCTTTTATGACAAAACAAAAGGTCA
* * * * * * * *
9123900 TAACAATTTGAAATAGATAATTATTCAAATAGTTATGATTATTTGATCTAGTTCAGTAAACATAT
65 TAATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAAT
** * * * * *
9123965 TTATTTTTAAAATTTTTTTACTTATTAATTGTCAATATATTAGTAAATTAGT
130 TT-TTTTTTTAATTCTTTTACTCATTAATTTTTAA-ATATTAATAAATTAGT
* *
9124017 ATTAGTTTAATCGAAATAAGCTTGTATGAA
1 ATTATTTTATTCG-AATAAGCTTGTATGAA
9124047 TAGATTATTT
Statistics
Matches: 600, Mismatches: 112, Indels: 68
0.77 0.14 0.09
Matches are distributed among these distances:
170 3 0.00
171 92 0.15
172 33 0.05
173 12 0.02
175 1 0.00
176 4 0.01
177 2 0.00
179 10 0.02
180 47 0.08
181 107 0.18
182 261 0.44
183 23 0.04
184 5 0.01
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (179 bp):
ATTATTTTATTCGAATAAGCTTGTATGAACTGAAACAATTCTTTTATGACAAAACAAAAGGTCAT
AATAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATT
TTTTTTTTAATTCTTTTACTCATTAATTTTTAAATATTAATAAATTAGT
Found at i:9124799 original size:10 final size:10
Alignment explanation
Indices: 9124784--9124817 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
9124774 TAAGTTATAA
9124784 TAATTAAATT
1 TAATTAAATT
9124794 TAATTATAATT
1 TAATTA-AATT
*
9124805 TAAATAAATT
1 TAATTAAATT
9124815 TAA
1 TAA
9124818 ATTTATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATTAAATT
Found at i:9124811 original size:28 final size:25
Alignment explanation
Indices: 9124778--9124856 Score: 86
Period size: 28 Copynumber: 2.9 Consensus size: 25
9124768 TATTTCTAAG
9124778 TTATAATAATTAAATTTAATTATAAT
1 TTATAA-AATTAAATTTAATTATAAT
*
9124804 TTAAATAAATTTAAATTTATATTAATAAT
1 TT--ATAAAATTAAATTTA-ATT-ATAAT
9124833 TTATAACAATTAAATTTAAATTAT
1 TTATAA-AATTAAATTT-AATTAT
9124857 GCCTTAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
26 2 0.04
27 16 0.36
28 19 0.42
29 8 0.18
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATAAAATTAAATTTAATTATAAT
Found at i:9124828 original size:21 final size:20
Alignment explanation
Indices: 9124778--9124828 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
9124768 TATTTCTAAG
* *
9124778 TTATAATAATTAAATTT-AA
1 TTATATTAAATAAATTTAAA
9124797 TTATAATTTAAATAAATTTAAA
1 TTAT-A-TTAAATAAATTTAAA
9124819 TTTATATTAA
1 -TTATATTAA
9124829 TAATTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 4 0.15
20 1 0.04
21 14 0.54
22 3 0.12
23 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATATTAAATAAATTTAAA
Found at i:9125297 original size:13 final size:13
Alignment explanation
Indices: 9125260--9125302 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
9125250 TTTAATAATG
*
9125260 ATAAACTAATAAAT
1 ATAAA-TAATATAT
* *
9125274 ATTAATTATATAT
1 ATAAATAATATAT
9125287 ATAAATAATATAT
1 ATAAATAATATAT
9125300 ATA
1 ATA
9125303 TAGTATAAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAATAATATAT
Found at i:9125482 original size:17 final size:19
Alignment explanation
Indices: 9125460--9125497 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9125450 TAAAGTTTAA
9125460 AAATA-TTTT-ATTATTAT
1 AAATATTTTTAATTATTAT
9125477 AAATATTTTTAATTATTAT
1 AAATATTTTTAATTATTAT
9125496 AA
1 AA
9125498 TTATAACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATATTTTTAATTATTAT
Found at i:9126059 original size:34 final size:34
Alignment explanation
Indices: 9126021--9126117 Score: 89
Period size: 30 Copynumber: 3.0 Consensus size: 34
9126011 ATGTTATAAA
* *
9126021 TAATATAATATTAATTTTAAGTTAACTAATTTAT
1 TAATATAATATTAATTTTAAATTAACTAATTAAT
* *
9126055 TAATATAATA--AATATT-ATTTAA-TAATTAAT
1 TAATATAATATTAATTTTAAATTAACTAATTAAT
** *
9126085 TAATATTGTATT-ATTATAAATTAACTAA-TAAT
1 TAATATAATATTAATTTTAAATTAACTAATTAAT
9126117 T
1 T
9126118 TTTAATATTA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
30 15 0.29
31 8 0.16
32 15 0.29
33 3 0.06
34 10 0.20
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.48
Consensus pattern (34 bp):
TAATATAATATTAATTTTAAATTAACTAATTAAT
Found at i:9126328 original size:29 final size:25
Alignment explanation
Indices: 9126278--9126354 Score: 68
Period size: 29 Copynumber: 2.9 Consensus size: 25
9126268 ATTAATTATT
9126278 ATTATA-ACTTATAATT-TATATTAAA
1 ATTATATA-TTATAATTAT-TATTAAA
*
9126303 ATATAACTAATATTATAATTATTATTATA
1 AT-T-A-T-ATATTATAATTATTATTAAA
9126332 ATTATATATTATAATTAATTATT
1 ATTATATATTATAATT-ATTATT
9126355 TGTTATTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
25 13 0.30
26 8 0.18
27 2 0.05
28 2 0.05
29 17 0.39
30 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTATATATTATAATTATTATTAAA
Found at i:9126352 original size:17 final size:17
Alignment explanation
Indices: 9126330--9126383 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
9126320 ATTATTATTA
9126330 TAATTATATATTATAAT
1 TAATTATATATTATAAT
* * *
9126347 TAATTATTTGTTATTAT
1 TAATTATATATTATAAT
9126364 TAA-TATA-ATGTATAAT
1 TAATTATATAT-TATAAT
9126380 TAAT
1 TAAT
9126384 AAATTATAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 1 0.03
16 11 0.38
17 17 0.59
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
TAATTATATATTATAAT
Found at i:9126877 original size:14 final size:13
Alignment explanation
Indices: 9126841--9126884 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
9126831 CTAATCTGTA
*
9126841 TATGAATATAAAT
1 TATGAATATGAAT
*
9126854 TATTAATATGAAT
1 TATGAATATGAAT
9126867 TATGGAATATGAAAT
1 TAT-GAATATG-AAT
9126882 TAT
1 TAT
9126885 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 14 0.54
14 6 0.23
15 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (13 bp):
TATGAATATGAAT
Found at i:9127059 original size:18 final size:18
Alignment explanation
Indices: 9127038--9127090 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 18
9127028 ACACTAATTT
* * *
9127038 ATTAAATTATTTTGTTTA
1 ATTAAATTATTATATTAA
9127056 ATTAAAATTATTATATTAA
1 ATT-AAATTATTATATTAA
9127075 ATTAAA-TATTA-ATTAA
1 ATTAAATTATTATATTAA
9127091 TTATATATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 5 0.16
17 5 0.16
18 6 0.19
19 15 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTAAATTATTATATTAA
Found at i:9127098 original size:15 final size:17
Alignment explanation
Indices: 9127064--9127100 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
9127054 TAATTAAAAT
9127064 TATTATATTAAATTAAA
1 TATTATATTAAATTAAA
*
9127081 TATTA-ATT-AATTATA
1 TATTATATTAAATTAAA
9127096 TATTA
1 TATTA
9127101 CTAATTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 11 0.58
16 3 0.16
17 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTATATTAAATTAAA
Found at i:9127958 original size:180 final size:180
Alignment explanation
Indices: 9127301--9130201 Score: 2112
Period size: 181 Copynumber: 16.2 Consensus size: 180
9127291 AATTCACAAC
* * * ** *
9127301 GATTTTAAATAGATAATTATTCAAATAATCATAACTATTTGAATTTGTTTGGTAAACAAATTTAG
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTA-
* * * * * * * * *
9127366 TTTTTCAAATATCCTGCTTATTAATCTTT-CAAAAGTTAATAAATTAGTATTATTTTCTTTCGAA
65 TTTTTTAAATCTCTTAC-TATTAATTTTTGGAATA-TTAATAAATTAGTATTATTTTATTTCAAA
* * ** * * *
9127430 TAAGCTTGTATGAACTGAAACGATTATTTTATGATTAAACAAAAAGGTTAGAAT
128 TAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAAC-AAAAGATCATAAT
* * * ** * * *
9127484 GATTTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAAC-TAATCGGCAAACACATTTAT
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTAT
** * * * *
9127548 TTTTTAAATCTC-T--TATTAATTTTTAAAATGTTATTAAATTAGTATTATTTTTATTT-GAATC
66 TTTTTAAATCTCTTACTATTAATTTTTGGAATATTAATAAATTAGTATTA-TTTTATTTCAAATA
* *** * * *
9127609 AGCTTATATGATAAAAAAACAATTATTTTATGACAAAA-TAAAGATCATAAC
130 AGCTTGTATGA-ACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
* * * *
9127660 GATTTGAGAT---TAA-TATTTCAAATAGTCATAACTATTAGAACTACT-TTGA-AAAACA-ACT
1 GATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTTGAACT--TGTTCAGTAAACATA-T
* * * * *
9127718 TTAGTTTTTAAATCTCTTGCT-TAACCATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTC
62 TTATTTTTTAAATCTCTTACTATTA--ATTTTTGGAATATTAATAAATTAGTATTATTTTATTTC
* * * * * *
9127782 AGATAAGTTTTTATTAACTGAAACAATTGTTTTATGACAAAACAAAATATCAAAAT
125 AAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
* * * * * * ** * * *
9127838 AATTTTAAACAGATAATTGTTTAAATGGTCATATTTATTTAAAATTGTTCAGTAAACAAATTTAT
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTA-
* * *
9127903 TTTTTTAAATCTCTTGCT-TTAATTTTTTGAATATTAATAAATTAGTATTATTTTATTCCAAATA
65 TTTTTTAAATCTCTTACTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * * *
9127967 AGCTTGTATGAATTGAAATAATTGTTTTATGACTAAACAAAAG--GAT-A-
130 AGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
*** * *
9128014 GA----AAATAGATAATTATTTTTATAGTCTTAACTATTTGAACTAGTT-AGGCT-AACATATTT
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCA-G-TAAACATATTT
** * * * *
9128073 ATTTTTTAAATCT-TT--TATTAATTTTTAAAATATTATTAAATTAGTATCATTTTA-ATCTGAA
64 ATTTTTTAAATCTCTTACTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTC-AAA
** * * **
9128134 TAAGCTTGTATGAAAGGAAACAATTGTTGTATGACAAAA-TAAAGATCATTGT
128 TAAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
* * * * * * * *
9128186 GATTTGAGATAGATAATTGTTCAAATAGTTATAACTATTTGAACTGGTTTAGTAAATAGATTTAG
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTAT
* ** * * ** * *
9128251 TTTTTAAATCT-GT--TATTAA-TTTTCAAAAATTAATAAATCAAAATTATTTTAGTTT-GAACA
66 TTTTTAAATCTCTTACTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTA-TTTCAAATA
** * *
9128311 ATTTTGTATGAAC-AAAAAAATTGTTTTATGAC-AAA-AAAAGATCATAAT
130 AGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
* *
9128359 GATTTGAAATAAATAATTATTCAAATAGTCAT-ACTATTTGAACTTGCTC-GATAAACATATTTA
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAG-TAAACATATTTA
* * * * * *
9128422 TTTTTAAAATTTTTTACTTATTAATGTTTGGAATTTTAATAAATTAGTACTATTTTATTTCGAAA
65 TTTTTTAAATCTCTTAC-TATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTC-AAA
* * * * * *
9128487 -AAGCTTTTAT-CACTAAAAACAATTAG-TTTATGACAAAATAAAAAGGTCATAAC
128 TAAGCTTGTATGAACT-GAAACAATT-GTTTTATGACAAAA-CAAAAGATCATAAT
* *
9128540 GATTTGAAATAGATAATTCTTCAAATAAAATAGTCATAACTATTTGAACGTGTTCA-TAAAACAT
1 GATTTGAAATAGATAATTATTC-----AAATAGTCATAACTATTTGAACTTGTTCAGT-AAACAT
*
9128604 ATTTATTTTTTAAAAT-T-TTACTTATTAATTTTTGGAATATTAATAAATTTA-AATTATTTTA-
60 ATTTATTTTTT-AAATCTCTTAC-TATTAATTTTTGGAATATTAATAAA-TTAGTATTATTTTAT
* *
9128665 TTCGAAATAAGCTTGCATGAAC--AAAGCCAATTGTTTTATGACAAAACAAAAGGTCATAAT
122 TTC-AAATAAGCTTGTATGAACTGAAA--CAATTGTTTTATGACAAAACAAAAGATCATAAT
* * * * * * * * *
9128725 GTTTTGAAATAGATAATTGTTTAGATAGTCATAACTATTTAAATTTATTCGGTAAATATATTCT-
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATT-TA
* * *
9128789 TTTTTTAATTCTCTCACTCATTAATTTTTGGAATATTAATAAATTAGTATTATCTTATTTCAAAT
65 TTTTTTAAATCTCTTACT-ATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * * *
9128854 AAGCTTATATGAATTGAAACAAGTGTTTTATTACAAAAGAAAA-AGTCATAAT
129 AAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGA-TCATAAT
* * * * ** *
9128906 GATTTGAAATAGATAATTATTGAAATATTAATGACTATTTGAACTTGTTTGGTAAATATATTTAT
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTAT
* * *** * * *
9128971 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATTAATTAATATTATTTTAATTCAAATA
66 TTTTTAAATCTCTTAC-TATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * * *
9129036 AACTTGTATGAA-TAGAAATAATTATTTTATGACAAAACAAAAAATCATAA-
130 AGCTTGTATGAACT-GAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
* * ** * * * ** *
9129086 CATGTTGAAATAAATAATTGCTCAAATAGCCATAATTATTAGAACTTGTTTGGTAAACAGATTTA
1 GAT-TTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTA
*
9129151 -TTTTTAAATCTTTTACTAATTAATTGTATT--AATATTAATAAATTTA-TATTATTTTA-TTCA
65 TTTTTTAAATCTCTTACT-ATTAATT-T-TTGGAATATTAATAAA-TTAGTATTATTTTATTTC-
* * * * * * *
9129211 AAATAAGCTTAG-ATGAACAGAAAAAATTCTTTTATTACAAAACAAAAGGTTATAGCT
125 AAATAAGCTT-GTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATA-AT
* * * * * * * * *
9129268 -ATTTCAAATAGATAATTATTCAAATTGTCCTAATTATTTAAACTTGTTTAGTAAACAAAGTCAT
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTAT
* * **
9129332 TTTTTAAATCTCTTTATTATTAATTTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATA
66 TTTTTAAATCTC-TTACTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * * * * *
9129397 AGCTTATATGAATTGAAACAACTCTTTTATGACAAATCAAAAGGTCATAAT
130 AGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
* * * * * *
9129448 GATTTGAAATAGATAATTATTCAAATTGTCATGATTATTTGATCTAGTGT-GGTAAAC--A--TA
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGT-TCAGTAAACATATTTA
* * * * * *** * *
9129508 TTTTTAAAATTTTTTACTTACTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATGCAAAT
65 TTTTTTAAATCTCTTAC-TATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAAT
**
9129573 AAGCTTGTATGAA-TAGAAACAATTGTTTTACAACAAAACAAAATG-TCATAAT
129 AAGCTTGTATGAACT-GAAACAATTGTTTTATGACAAAACAAAA-GATCATAAT
* ** * * **
9129625 GATTTGAAATAAATAATTGCTCAAATAGTCATAACTATTTGAACTAGTT-TG-ATTCATTGATTT
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACA-T-ATTT
* * * * * * * *
9129688 ATTGTCTAAATCAC-T--TATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCAAAC
64 ATTTTTTAAATCTCTTACTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * ** ** * * *
9129750 AAACTTATATGAACAAAAACGTTTGTTGTATGACAAAACAAAAAATAATAAT
129 AAGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
* * * * * * * *
9129802 GATTTGAAATATATAATTGTTCAAATAGT-ATAATTTTTTAAACTGGTT-AGGTAAACAGAATTA
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCA-GTAAACATATTTA
* * * *
9129865 TTTTTTAAATCTTTTACTTATTATTTTTTGAAATATTAATAAATTCA-TTTTATTTTATTTCAAA
65 TTTTTTAAATCTCTTAC-TATTAATTTTTGGAATATTAATAAATT-AGTATTATTTTATTTCAAA
* * * * *
9129929 TAAGCTAGTATGAATTGAGAA-AATTGTTTT-TGACAAGATAAAAGATAATAAT
128 TAAGCTTGTATGAACTGA-AACAATTGTTTTATGACAAAACAAAAGATCATAAT
* * * * *
9129981 GATTTGAAATAGATAATTATTCATATAGTCTTAACTATTTGAA-TTGGTTCGGCAAACAAATTTA
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTCAGTAAACATATTTA
* * * * **
9130045 TTTTTTAAATCTCTTAATTATTAATTTTTGGAATATTATTAGATTAGTATTGTTTTATTTTGAAT
65 TTTTTTAAATCTCTT-ACTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * *
9130110 AAGCTTGTATGAACAT-AAATAATTATTTTATGACAAAACAAAAGGTTATAAT
129 AAGCTTGTATGAAC-TGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
** * * *
9130162 GATTTGACGTATAGAATTGTTCAAATAGTCATAACTATTT
1 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
9130202 TAATATAAAT
Statistics
Matches: 2164, Mismatches: 426, Indels: 258
0.76 0.15 0.09
Matches are distributed among these distances:
168 6 0.00
169 69 0.03
170 4 0.00
171 14 0.01
172 79 0.04
173 68 0.03
174 37 0.02
175 44 0.02
176 128 0.06
177 341 0.16
178 102 0.05
179 65 0.03
180 415 0.19
181 546 0.25
182 48 0.02
183 43 0.02
184 3 0.00
185 39 0.02
186 72 0.03
187 37 0.02
188 4 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATATTTAT
TTTTTAAATCTCTTACTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAA
GCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAAT
Found at i:9129217 original size:542 final size:539
Alignment explanation
Indices: 9127301--9130201 Score: 2075
Period size: 542 Copynumber: 5.4 Consensus size: 539
9127291 AATTCACAAC
* * * * * *
9127301 GATTTTAAATAGATAATTATTCAAATAATCATAACTATTTGAATTTGTTTGGTAAACAAATTTAG
1 GATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTCGGTAAACATATTTA-
* * ** * * * ** *
9127366 TTTTTCAAATATCCTGCTTATTAATCTTTCAAAA-GTTAATAAATTAGTATTATTTTCTTTCGAA
65 TTTTTAAAATCTTTTACTTATTAAT-TGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAA
* ** * * *
9127430 TAAGCTTGTATGAACT-GAAACGATTATTTTATGATTAAACAAAAAGGTTAGAATGATTTGAAAT
129 TAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAACAAAAA-GTCATAA-CATTTGAAAT
* ** * * * ** * ** *
9127494 AGATAATTATTCTAATAATCTTAACTATTTGAAC-TAATCGGCAAACACATTTATTTTTTAAATC
191 AAATAATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGATAAACAGATTTA-TTTTTAAATC
* * * * * ** * *
9127558 TCTTATTAATT--TT-TA-AAATGTTATTAAA-TTAGTATTATTTTTATT-TGAATCAGCTTATA
255 TTTTACTAATTAATTGTATTAATATTAATAAATTTA-TATTA-TTTTATTCAAAATAAGCTT-GA
* * * * * * * *
9127617 TGATAAAAAAACAATTATTTTATGACAAAA-TAAAGATCATAACGATTTGAGAT---TAATAT-T
317 TG--AACAAAACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGAAATAGATAAT-TGT
* ** * ** * * * *
9127677 TCAAATAGTCATAACTA-TTAGAACTACTTTGAAAAACAACTTTAGTTTTTAAATCTCTTGCTTA
379 TCAAATAGTCATAATTATTTA-AACTTGTTAGGTAAACAAATTCATTTTTTAAATCTCTTACTTA
*** * * * * * * *
9127741 ACCATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAGATAAGTTTTTATTAACTGAAAC
443 TTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAAC
* * *
9127806 AATTGTTTTATGACAAAACAAAATA-TCAAAAT
508 AACTGTTTTATGACAAAAGAAAA-AGTCATAAT
* * * * * * * * * * *
9127838 AATTTTAAACAGATAATTGTTTAAATGGTCAT-ATTTATTTAAAATTGTTCAGTAAACAAATTTA
1 GATTTGAAATAGATAATTATTCAAATAGTCATGA-CTATTTGAACTTGTTCGGTAAACATATTTA
* * * * ***
9127902 TTTTTTTAAATCTCTTGC-T-TTAATTTTTTGAATATTAATAAATTAGTATTATTTT-ATTCCAA
65 -TTTTTAAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATT-CAA
* * * * * * *
9127964 ATAAGCTTGTATGAATTGAAATAATTGTTTTATGACTAAAC-AAAAG-GAT-AGA----AAATAG
128 ATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAACATTTGAAATAA
** *** * * * * *
9128022 ATAATTATTTTTATAGTCTTAACTATTTGAACTAGTTAGGCT-AACATATTTATTTTTTAAATCT
193 ATAATTGCTCAAATAGTCATAACTATTTGAACTTGTT-TGATAAACAGATTTA-TTTTTAAATCT
* * * * * **
9128086 TTTATTAATT--TT-TA-AAATATTATTAAA-TTAGTATCATTTTAATCTGAATAAGCTTGTATG
256 TTTACTAATTAATTGTATTAATATTAATAAATTTA-TATTATTTTATTCAAAATAAGCTTG-ATG
* * * * ** * *
9128146 AA-AGGAAACAATTGTTGTATGACAAAA-TAAAGATCATTGTGATTTGAGATAGATAATTGTTCA
319 AACA--AAACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGAAATAGATAATTGTTCA
* * * * * * * * *
9128209 AATAGTTATAACTATTTGAACTGGTTTA-GTAAATAGATTTAGTTTTTAAA--TC-T-GTTATTA
382 AATAGTCATAATTATTTAAACTTG-TTAGGTAAACAAATTCATTTTTTAAATCTCTTACTTATTA
** * * ** * * ** * ** *
9128269 A-TTTTCAAAAATTAATAAATCAAAATTATTTTAGTTT-GAACAATTTTGTATGAA-CAAAAAAA
446 ATTTTTGGAATATTAATAAATTAGTATTATTTTA-TTTCAAATAAGCTTATATGAATTGAAACAA
* *
9128331 TTGTTTTATGACAAAA-AAAGA-TCATAAT
510 CTGTTTTATGACAAAAGAAAAAGTCATAAT
* * *
9128359 GATTTGAAATAAATAATTATTCAAATAGTCAT-ACTATTTGAACTTGCTCGATAAACATATTTAT
1 GATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTCGGTAAACATATTTAT
* *** * * *
9128423 TTTTAAAATTTTTTACTTATTAA-TGTTTGGAATTTTAATAAATTAGTACTATTTTATTTCGAAA
66 TTTTAAAATCTTTTACTTATTAATTG-TCAAAATATTAATAAATTAGTATTATTTTAATTC-AAA
* * * * * *
9128487 -AAGCTTTTATCACTAAAAACAATTAGTTTATGACAAAATAAAAAGGTCATAACGATTTGAAATA
129 TAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAA-GTCATAAC-ATTTGAAATA
* * * *
9128551 GATAATT-CTTCAAATAAAATAGTCATAACTATTTGAACGTG-TTCATAAAACATATTTATTTTT
192 AATAATTGC-TC-----AAATAGTCATAACTATTTGAACTTGTTTGAT-AAACAGATTTA-TTTT
* * * *
9128614 TAAA-ATTTTACTTATTAATT-T-TTGGAATATTAATAAATTTAAATTATTTTATTCGAAATAAG
249 TAAATCTTTTACTAATTAATTGTATT--AATATTAATAAATTTATATTATTTTATTCAAAATAAG
* *
9128676 CTTGCATGAACAAAGCCAATTGTTTTATGACAAAACAAAAGGTCATAATGTTTTGAAATAGATAA
312 CTTG-ATGAACAAA-ACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGAAATAGATAA
* * * * * * * * * * *
9128741 TTGTTTAGATAGTCATAACTATTTAAATTTATTCGGTAAATATATTCTTTTTTTAATTCTCTCAC
375 TTGTTCAAATAGTCATAATTATTTAAACTTGTTAGGTAAACAAATTCATTTTTTAAATCTCTTAC
* *
9128806 TCATTAATTTTTGGAATATTAATAAATTAGTATTATCTTATTTCAAATAAGCTTATATGAATTGA
440 TTATTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGA
* *
9128871 AACAAGTGTTTTATTACAAAAGAAAAAGTCATAAT
505 AACAACTGTTTTATGACAAAAGAAAAAGTCATAAT
* * * * *
9128906 GATTTGAAATAGATAATTATTGAAATATTAATGACTATTTGAACTTGTTTGGTAAATATATTTAT
1 GATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTCGGTAAACATATTTAT
* * *
9128971 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATTAATTAATATTATTTTAATTCAAATA
66 TTTTAAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAATA
* * *
9129036 AACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAAATCATAACATGTTGAAATAAAT
131 AGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAACAT-TTGAAATAAAT
* * * *
9129101 AATTGCTCAAATAGCCATAATTATTAGAACTTGTTTGGTAAACAGATTTATTTTTAAATCTTTTA
195 AATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGATAAACAGATTTATTTTTAAATCTTTTA
9129166 CTAATTAATTGTATTAATATTAATAAATTTATATTATTTTATTCAAAATAAGCTTAGATGAACAG
260 CTAATTAATTGTATTAATATTAATAAATTTATATTATTTTATTCAAAATAAGCTT-GATGAACA-
* * * * * * *
9129231 AAAAAATTCTTTTATTACAAAACAAAAGGTTAT-A-GCTATTTCAAATAGATAATTATTCAAATT
323 AAACAATTGTTTTATGACAAAACAAAAGGTAATAATG-T-TTTGAAATAGATAATTGTTCAAATA
* *
9129294 GTCCTAATTATTTAAACTTGTTTA-GTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATTAATT
386 GTCATAATTATTTAAACTTG-TTAGGTAAACAAATTCATTTTTTAAATCTC-TTACTTATTAATT
* ** *
9129357 TTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATTGAAACAACTCT
449 TTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAACAACTGT
** *
9129422 TTTATGACAAATCAAAAGGTCATAAT
514 TTTATGACAAAAGAAAAAGTCATAAT
* * * *
9129448 GATTTGAAATAGATAATTATTCAAATTGTCATGATTATTTGATCTAGTGT-GGTAAAC--A--TA
1 GATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTGAACTTGT-TCGGTAAACATATTTA
* * *
9129508 TTTTTAAAATTTTTTACTTACTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATGCAAAT
65 TTTTTAAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAAT
* ** * *
9129573 AAGCTTGTATGAATAGAAACAATTGTTTTACAACAAAACAAAATGTCATAATGATTTGAAATAAA
130 AAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAA-CATTTGAAATAAA
* ** ** * **
9129638 TAATTGCTCAAATAGTCATAACTATTTGAACTAGTTTGATTCATTGATTTATTGTCTAAATCACT
194 TAATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGATAAACAGATTTATT-TTTAAATCTTT
* * * * * * * *
9129703 TATTAATT-TTTG-A--AATATTAATAGA-TTAGTATTACTTTATTCCAAACAAACTTATATGAA
258 TACTAATTAATTGTATTAATATTAATAAATTTA-TATTATTTTATTCAAAATAAGCTT-GATGAA
** * ** * *
9129763 CAAAAACGTTTGTTGTATGACAAAACAAAAAATAATAATGATTTGAAATATATAATTGTTCAAAT
321 C-AAAACAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGAAATAGATAATTGTTCAAAT
* * * *
9129828 AGT-ATAATTTTTTAAACTGGTTAGGTAAACAGAATT-ATTTTTTAAATCTTTTACTTATTATTT
385 AGTCATAATTATTTAAACTTGTTAGGTAAACA-AATTCATTTTTTAAATCTCTTACTTATTAATT
* * *
9129891 TTTGAAATATTAATAAATTCA-TTTTATTTTATTTCAAATAAGC-TAGTATGAATTGAGAA-AAT
449 TTTGGAATATTAATAAATT-AGTATTATTTTATTTCAAATAAGCTTA-TATGAATTGA-AACAAC
*
9129953 TGTTTT-TGAC--AAGATAAAAGATAATAAT
511 TGTTTTATGACAAAAGA-AAAAG-TCATAAT
* * * * *
9129981 GATTTGAAATAGATAATTATTCATATAGTCTTAACTATTTGAA-TTGGTTCGGCAAACAAATTTA
1 GATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTGAACTT-GTTCGGTAAACATATTTA
* * * * *** * * * * **
9130045 TTTTTTAAATCTCTTAATTATTAATTTTTGGAATATTATTAGATTAGTATTGTTTTATTTTGAAT
65 TTTTTAAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAAT
* * * * * * ** *
9130110 AAGCTTGTATGAACATAAATAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGACGTATA
130 AAGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAA-CATTTGAAATAAA
* *
9130175 GAATTGTTCAAATAGTCATAACTATTT
194 TAATTGCTCAAATAGTCATAACTATTT
9130202 TAATATAAAT
Statistics
Matches: 1912, Mismatches: 358, Indels: 188
0.78 0.15 0.08
Matches are distributed among these distances:
519 13 0.01
520 25 0.01
521 93 0.05
522 12 0.01
523 22 0.01
524 40 0.02
525 10 0.01
526 83 0.04
527 70 0.04
528 2 0.00
529 42 0.02
530 19 0.01
531 3 0.00
532 7 0.00
533 65 0.03
534 120 0.06
535 194 0.10
536 7 0.00
537 199 0.10
538 218 0.11
539 85 0.04
540 2 0.00
541 12 0.01
542 309 0.16
543 21 0.01
544 39 0.02
545 19 0.01
546 6 0.00
547 61 0.03
548 112 0.06
549 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (539 bp):
GATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTCGGTAAACATATTTAT
TTTTAAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCAAATA
AGCTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAAAGTCATAACATTTGAAATAAATA
ATTGCTCAAATAGTCATAACTATTTGAACTTGTTTGATAAACAGATTTATTTTTAAATCTTTTAC
TAATTAATTGTATTAATATTAATAAATTTATATTATTTTATTCAAAATAAGCTTGATGAACAAAA
CAATTGTTTTATGACAAAACAAAAGGTAATAATGTTTTGAAATAGATAATTGTTCAAATAGTCAT
AATTATTTAAACTTGTTAGGTAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTTTTGGAA
TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAACAACTGTTTTATGA
CAAAAGAAAAAGTCATAAT
Found at i:9130365 original size:17 final size:17
Alignment explanation
Indices: 9130322--9130368 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
9130312 ATAATGTACA
9130322 TTATAATAAATAAAATT
1 TTATAATAAATAAAATT
*
9130339 TTAATTATAAA-AAAATT
1 TT-ATAATAAATAAAATT
9130356 TATATAATAAATA
1 T-TATAATAAATA
9130369 GTATATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TTATAATAAATAAAATT
Found at i:9130877 original size:42 final size:43
Alignment explanation
Indices: 9130796--9130906 Score: 102
Period size: 42 Copynumber: 2.6 Consensus size: 43
9130786 TTATAATTTG
* * **
9130796 TAATTTAATAAATTATATTGTATTATTATAATATTATAATAAA
1 TAATTTAATAAATTATATTATATTAATATAATACAATAATAAA
* *
9130839 TAATTTAA-ACATTATATTAT-TTAAATATAATACAATAAT-TA
1 TAATTTAATAAATTATATTATATT-AATATAATACAATAATAAA
* *
9130880 TAAATTAATATATTAATATTATTATTA
1 TAATTTAATAAATT-ATATTA-TATTA
9130907 TTTTTGTTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
41 10 0.18
42 27 0.49
43 14 0.25
44 2 0.04
45 2 0.04
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (43 bp):
TAATTTAATAAATTATATTATATTAATATAATACAATAATAAA
Found at i:9130892 original size:37 final size:37
Alignment explanation
Indices: 9130816--9130894 Score: 92
Period size: 37 Copynumber: 2.1 Consensus size: 37
9130806 AATTATATTG
*
9130816 TATTATTATAATATTATAATAAATAATTTAAACATTA
1 TATTATTATAATATTATAATAAATAATTTAAACAATA
*
9130853 TATTATT-TAA-A-TATAATACAATAATTATAAATTAATA
1 TATTATTATAATATTATAATA-AATAATT-TAAA-CAATA
9130890 TATTA
1 TATTA
9130895 ATATTATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
34 7 0.19
35 8 0.22
36 7 0.19
37 15 0.41
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.46
Consensus pattern (37 bp):
TATTATTATAATATTATAATAAATAATTTAAACAATA
Found at i:9130896 original size:19 final size:19
Alignment explanation
Indices: 9130830--9130896 Score: 54
Period size: 19 Copynumber: 3.7 Consensus size: 19
9130820 ATTATAATAT
*
9130830 TATAATA-AATAATTTAAA
1 TATAATATATTAATTTAAA
*
9130848 CAT--TATATT-ATTTAAA
1 TATAATATATTAATTTAAA
* *
9130864 TATAATACAATAATTATAAA
1 TATAATATATTAATT-TAAA
9130884 T-TAATATATTAAT
1 TATAATATATTAAT
9130897 ATTATTATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
16 11 0.30
17 2 0.05
18 6 0.16
19 13 0.35
20 5 0.14
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (19 bp):
TATAATATATTAATTTAAA
Found at i:9131563 original size:181 final size:181
Alignment explanation
Indices: 9131328--9131658 Score: 470
Period size: 181 Copynumber: 1.8 Consensus size: 181
9131318 AATTATTTAG
* ***
9131328 TCGATAAATAGATTTATTCTTTTAAATCTCTTTCTTATTAATTTTTTGAATATTAATAAATTAGT
1 TCGATAAATAAATTTATTCTTTTAAATCTCTTTCTTATTAATTTTCAAAATATTAATAAATTAGT
* * *
9131393 ATTAATGT-ATTATGAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACTAAACAAAAGGTC
66 ATTAATGTAATTA-GAATAAGCTTGTATGAA-TAAAACAATTCTTTTACGACAAAACAAAAGGTC
*
9131457 AAAACGATTTTAAATAGATAATTGTTCTAATGGTCTTAGCTATTTGAACTAAT
129 AAAACGATTTGAAATAGATAATTGTTCTAATGGTCTTAGCTATTTGAACTAAT
* *
9131510 TCGATAAATAAATTTATT-TTTTAAATCTGTTAT-TTATTAATTTTCAAAATATTATTAAATTAG
1 TCGATAAATAAATTTATTCTTTTAAATCTCTT-TCTTATTAATTTTCAAAATATTAATAAATTAG
* * * * *
9131573 TATTATTTTAATTAGAATAAGTTTGTATGAATAAAACAATTCTTTTACGACAAAAGAAACGGTCA
65 TATTAATGTAATTAGAATAAGCTTGTATGAATAAAACAATTCTTTTACGACAAAACAAAAGGTCA
*
9131638 TAACGATTTGAAATAGATAAT
130 AAACGATTTGAAATAGATAAT
9131659 CATAAATAAA
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
180 48 0.37
181 61 0.47
182 22 0.17
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
TCGATAAATAAATTTATTCTTTTAAATCTCTTTCTTATTAATTTTCAAAATATTAATAAATTAGT
ATTAATGTAATTAGAATAAGCTTGTATGAATAAAACAATTCTTTTACGACAAAACAAAAGGTCAA
AACGATTTGAAATAGATAATTGTTCTAATGGTCTTAGCTATTTGAACTAAT
Found at i:9131850 original size:18 final size:19
Alignment explanation
Indices: 9131807--9131855 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
9131797 ATTATACTAT
*
9131807 TTTAT-TAATATTAATATA
1 TTTATATAATTTTAATATA
*
9131825 ATTA-ATAATTTTAAT-TA
1 TTTATATAATTTTAATATA
*
9131842 TTTATATAAATTTA
1 TTTATATAATTTTA
9131856 TAGTAACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 5 0.20
18 20 0.80
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATATAATTTTAATATA
Found at i:9132167 original size:14 final size:14
Alignment explanation
Indices: 9132148--9132244 Score: 67
Period size: 14 Copynumber: 6.7 Consensus size: 14
9132138 TAACTATATA
9132148 ATATTATAATTAAT
1 ATATTATAATTAAT
*
9132162 ATATTATACTTAAT
1 ATATTATAATTAAT
* *
9132176 ATATAATTATTAA-
1 ATATTATAATTAAT
*
9132189 ATA--AAAATTAATTT
1 ATATTATAATTAA--T
9132203 ATCATTATAAATTAAT
1 AT-ATTAT-AATTAAT
9132219 AATTATTATAATTAAT
1 -A-TATTATAATTAAT
9132235 -TAATTATAAT
1 AT-ATTATAAT
9132245 AAATTAGCAT
Statistics
Matches: 66, Mismatches: 7, Indels: 20
0.71 0.08 0.22
Matches are distributed among these distances:
11 6 0.09
13 4 0.06
14 33 0.50
15 1 0.02
16 8 0.12
17 7 0.11
18 7 0.11
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTATAATTAAT
Found at i:9132199 original size:25 final size:25
Alignment explanation
Indices: 9132171--9132237 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
9132161 TATATTATAC
9132171 TTAATATATAATTATTAAA-TAAAAA
1 TTAAT-TATAATTATTAAATTAAAAA
* *
9132196 TTAATTTATCATTA-TAAATTAATAA
1 TTAA-TTATAATTATTAAATTAAAAA
9132221 TT-ATTATAATTAATTAA
1 TTAATTATAATT-ATTAA
9132238 TTATAATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
23 7 0.20
24 6 0.17
25 21 0.60
26 1 0.03
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAATTATAATTATTAAATTAAAAA
Found at i:9132224 original size:20 final size:18
Alignment explanation
Indices: 9132189--9132239 Score: 50
Period size: 20 Copynumber: 2.8 Consensus size: 18
9132179 TAATTATTAA
9132189 ATAA-AAATTAATTTATC
1 ATAATAAATTAATTTATC
* *
9132206 ATTATAAATTAATAATTATT
1 ATAATAAATTAAT--TTATC
*
9132226 ATAATTAATTAATT
1 ATAATAAATTAATT
9132240 ATAATAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
17 3 0.11
18 9 0.33
20 15 0.56
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
ATAATAAATTAATTTATC
Found at i:9132228 original size:17 final size:18
Alignment explanation
Indices: 9132193--9132250 Score: 75
Period size: 17 Copynumber: 3.3 Consensus size: 18
9132183 TATTAAATAA
* *
9132193 AAATTAATTTATCATTAT
1 AAATTAATTAATTATTAT
9132211 AAATTAA-TAATTATTAT
1 AAATTAATTAATTATTAT
*
9132228 -AATTAATTAATTATAAT
1 AAATTAATTAATTATTAT
9132245 AAATTA
1 AAATTA
9132251 GCATTAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.17
17 17 0.49
18 12 0.34
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AAATTAATTAATTATTAT
Found at i:9132249 original size:14 final size:13
Alignment explanation
Indices: 9132153--9132358 Score: 56
Period size: 14 Copynumber: 15.4 Consensus size: 13
9132143 ATATAATATT
*
9132153 ATAATTAATATATT
1 ATAATTAAT-TATA
*
9132167 ATACTTAATATATA
1 ATAATTAAT-TATA
*
9132181 ATTATTAA--ATA
1 ATAATTAATTATA
* *
9132192 AAAATTAATTTATC
1 ATAATTAA-TTATA
* *
9132206 ATTA-TAAAT-TA
1 ATAATTAATTATA
9132217 ATAATT-ATTATA
1 ATAATTAATTATA
9132229 ATTAATTAATTATA
1 A-TAATTAATTATA
9132243 ATAAATTAGCATTAATA
1 AT-AATTA--ATT-ATA
* *
9132260 TTTTTTATTAA-TATCA
1 ---ATAATTAATTAT-A
9132276 ATAAATATAATTATA
1 AT-AAT-TAATTATA
* * *
9132291 TTTATCAA--ATA
1 ATAATTAATTATA
*
9132302 ATATATTAAAATATTA
1 ATA-ATT-AATTAT-A
9132318 ATAATT-ATTATA
1 ATAATTAATTATA
*
9132330 ATAATTATTTAT-
1 ATAATTAATTATA
9132342 A-AATTAATTATA
1 ATAATTAATTATA
9132354 ATAAT
1 ATAAT
9132359 AGTTATAACT
Statistics
Matches: 140, Mismatches: 26, Indels: 53
0.64 0.12 0.24
Matches are distributed among these distances:
11 28 0.20
12 16 0.11
13 25 0.18
14 38 0.27
15 12 0.09
16 12 0.09
17 4 0.03
19 4 0.03
20 1 0.01
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATAATTAATTATA
Found at i:9132366 original size:12 final size:12
Alignment explanation
Indices: 9132316--9132358 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
9132306 ATTAAAATAT
9132316 TAATAATTATTA
1 TAATAATTATTA
9132328 TAATAATTATT-
1 TAATAATTATTA
9132339 T-ATAAATTAATTA
1 TAAT-AATT-ATTA
9132352 TAATAAT
1 TAATAAT
9132359 AGTTATAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 2 0.07
11 5 0.19
12 14 0.52
13 4 0.15
14 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATAATTATTA
Found at i:9132490 original size:23 final size:25
Alignment explanation
Indices: 9132464--9132518 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 25
9132454 ATTATTATTA
* *
9132464 TTATTATTATTTAA-A-GATTATAT
1 TTATTATTAATTAATATGATAATAT
*
9132487 TTATTATTAATTAATATTATAATAT
1 TTATTATTAATTAATATGATAATAT
9132512 TTATTAT
1 TTATTAT
9132519 ACTTTATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 13 0.48
24 1 0.04
25 13 0.48
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
TTATTATTAATTAATATGATAATAT
Found at i:9132493 original size:3 final size:3
Alignment explanation
Indices: 9132445--9132474 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
9132435 AATTGGATAA
9132445 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9132475 TAAAGATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:9132717 original size:18 final size:17
Alignment explanation
Indices: 9132674--9132745 Score: 76
Period size: 17 Copynumber: 4.2 Consensus size: 17
9132664 TATTATTATT
9132674 AAATACAAAATA-CAAA
1 AAATACAAAATACCAAA
*
9132690 ATACA-AAAAAATACCAAA
1 A-A-ATACAAAATACCAAA
* *
9132708 TAATGCAAAATACCAAAA
1 AAATACAAAATACC-AAA
9132726 AAATACAAAATACCAAA
1 AAATACAAAATACCAAA
9132743 AAA
1 AAA
9132746 AAGAACAGCA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
16 2 0.04
17 23 0.51
18 20 0.44
ACGTcount: A:0.71, C:0.15, G:0.01, T:0.12
Consensus pattern (17 bp):
AAATACAAAATACCAAA
Found at i:9132746 original size:18 final size:18
Alignment explanation
Indices: 9132674--9132746 Score: 82
Period size: 18 Copynumber: 4.2 Consensus size: 18
9132664 TATTATTATT
9132674 AAATACAAAATA-CAAAA
1 AAATACAAAATACCAAAA
9132691 TACAA-A-AAAATACC-AAA
1 -A-AATACAAAATACCAAAA
* *
9132708 TAATGCAAAATACCAAAA
1 AAATACAAAATACCAAAA
9132726 AAATACAAAATACCAAAA
1 AAATACAAAATACCAAAA
9132744 AAA
1 AAA
9132747 AGAACAGCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
15 2 0.04
17 17 0.37
18 25 0.54
19 2 0.04
ACGTcount: A:0.71, C:0.15, G:0.01, T:0.12
Consensus pattern (18 bp):
AAATACAAAATACCAAAA
Found at i:9133144 original size:20 final size:20
Alignment explanation
Indices: 9133112--9133160 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
9133102 CACAAAGAAG
* **
9133112 AAAAACAAAAGTCAGTTTA-
1 AAAAAAAAAAGTCAGAATAC
9133131 AAAAAAAAAGAGTCAGAATAC
1 AAAAAAAAA-AGTCAGAATAC
9133152 AAAAAAAAA
1 AAAAAAAAA
9133161 TAGTTTCACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.32
20 8 0.32
21 9 0.36
ACGTcount: A:0.69, C:0.08, G:0.10, T:0.12
Consensus pattern (20 bp):
AAAAAAAAAAGTCAGAATAC
Found at i:9134312 original size:21 final size:21
Alignment explanation
Indices: 9134288--9134330 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
9134278 ATAAAATGTG
9134288 TGCATCAGCATG-ATAACATTT
1 TGCAT-AGCATGCATAACATTT
* *
9134309 TGCATTGCATGCATGACATTT
1 TGCATAGCATGCATAACATTT
9134330 T
1 T
9134331 TTTACGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (21 bp):
TGCATAGCATGCATAACATTT
Found at i:9141831 original size:14 final size:15
Alignment explanation
Indices: 9141803--9141855 Score: 65
Period size: 14 Copynumber: 3.5 Consensus size: 15
9141793 TGTTTTCATC
9141803 TTCATTTTACTTTCCA
1 TTCATTTT-CTTTCCA
9141819 TTC-TTTTCTTTCCA
1 TTCATTTTCTTTCCA
*
9141833 -TCATTTTCTTGCCA
1 TTCATTTTCTTTCCA
9141847 TTCCATTTT
1 TT-CATTTT
9141856 TGTGTGCCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 2 0.06
14 17 0.52
15 5 0.15
16 9 0.27
ACGTcount: A:0.13, C:0.26, G:0.02, T:0.58
Consensus pattern (15 bp):
TTCATTTTCTTTCCA
Found at i:9144134 original size:8 final size:8
Alignment explanation
Indices: 9144117--9144159 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
9144107 ATTTTTCTTG
9144117 AAAG-AAA
1 AAAGAAAA
9144124 AAAGAAAAA
1 AAAG-AAAA
9144133 AAAGAAAA
1 AAAGAAAA
*
9144141 AAAGTAAA
1 AAAGAAAA
*
9144149 AAATAAAA
1 AAAGAAAA
9144157 AAA
1 AAA
9144160 TAATGACTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
7 4 0.13
8 20 0.65
9 7 0.23
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (8 bp):
AAAGAAAA
Found at i:9144159 original size:17 final size:17
Alignment explanation
Indices: 9144117--9144151 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9144107 ATTTTTCTTG
9144117 AAAG-AAAAAAGAAAAA
1 AAAGAAAAAAAGAAAAA
9144133 AAAGAAAAAAAGTAAAAA
1 AAAGAAAAAAAG-AAAAA
9144151 A
1 A
9144152 TAAAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 7 0.41
18 6 0.35
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (17 bp):
AAAGAAAAAAAGAAAAA
Found at i:9144956 original size:48 final size:49
Alignment explanation
Indices: 9144887--9145674 Score: 590
Period size: 48 Copynumber: 15.8 Consensus size: 49
9144877 AAAGAAGAGA
* * * * *
9144887 TTTTAAAATCGTTGAGCCTCTGCTGAGAAGAGCTTTTCCAA-ATTATAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
* * *
9144935 TTTTAAAGTTGTTGAGACTCTGCTGAGAGGAGCCATTTCCAAGAT-AAAA
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCCAAGATGAAAT
* * * *
9144984 TTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGTTTTTCTAATATGAGAAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGA-AAT
9145034 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTT-CAA-ATGAAA-
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
* *
9145080 TTTTAAAGTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAA-ATGAAA-
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
* * * *
9145127 ATTTAAAGTTATTGAGCCTCTGCTAAGAGGAACCCTTTT-CAAGATG--AT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGG-A-GCTTTTCCAAGATGAAAT
* * *
9145175 TTTTAAAGTTGTTGAGCCTCTGTTAAAAGGAGCTTTTCCAA-ATGAAAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
* * *
9145223 TTTTAAAGTTGTTGAGCTTCTGCTGAGATGAGCCCTTTTTCAAGATG--AT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG--CTTTTCCAAGATGAAAT
* * * *
9145272 TTTTAAAGTCGTTGAGCCTCTGTTGAGAAGAGCCCTTTTTCAAGATGAAAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG--CTTTTCCAAGATGAAAT
* *
9145323 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAACCCTTTT-TAAGATGGAGAGGAGCCCTTTTCAA
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGG-A-GCTTTTCCAAGAT-GA-A--A-----------
9145387 GAT
49 --T
* * * * * *
9145390 GGATTTTAAAATTGTTAAGCCTCTGTTGAGAGGAACTTTTTC-AGATGAGAT
1 ---TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
* * *
9145441 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA-AAGAGA-
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
* * * * * *
9145488 TTTTAAAGTCGTTGAGTCTCTGTTGAGAGGAGTTTTTTTCAAGATGAGAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCCAAGATGAAAT
* * * * * *
9145538 TTTTAAAGCTATTGAGCTTCTGTTGAGAGGAGCCTTTTTCAAGATAAGAAT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTCCAAGATGA-AAT
* * * * *
9145589 TTTTAAAAATTGTTGAGCCTCTGCTGAGAGAAACTTTTCCAA-AAGAGA-
1 TTTT-AAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
* *
9145637 TTTTAAAGTTGTCGAGCCTCAAG-TGAGAGGAGCATTTT
1 TTTTAAAGTTGTTGAGCCTC-TGCTGAGAGGAGC-TTTT
9145675 TTATTTGATC
Statistics
Matches: 606, Mismatches: 86, Indels: 96
0.77 0.11 0.12
Matches are distributed among these distances:
46 43 0.07
47 92 0.15
48 156 0.26
49 103 0.17
50 93 0.15
51 54 0.09
52 23 0.04
54 1 0.00
64 1 0.00
67 3 0.00
68 9 0.01
69 1 0.00
70 27 0.04
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (49 bp):
TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAAAT
Found at i:9145111 original size:96 final size:96
Alignment explanation
Indices: 9144886--9145674 Score: 606
Period size: 97 Copynumber: 7.9 Consensus size: 96
9144876 AAAAGAAGAG
* * * * * *
9144886 ATTTTAAAATCGTTGAGCCTCTGCTGAGAAGAGCTTTTCCAAATTATATTTTTAAAGTTGTTGAG
1 ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAATGAAATTTTTAAAGTTGTTGAG
* * *
9144951 ACTCTGCTGAGAGGAGCCATTTCCAAGATAAA
66 CCTCTGCTGAGAGGAGCCATTTTCAAGAT-GA
* *
9144983 ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGTTTTTCTAATATGAGAATTTTTAAAGTTGTTG
1 ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAA-ATGA-AATTTTTAAAGTTGTTG
9145048 AGCCTCTGCTGAGAGGAG-C-TTTTCAA-ATGAA
64 AGCCTCTGCTGAGAGGAGCCATTTTCAAGATG-A
* * *
9145079 ATTTTAAAGTTGTTGAACCTCTACTGAGAGGAGCTTTTCCAAATGAAA-ATTTAAAGTTATTGAG
1 ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAATGAAATTTTTAAAGTTGTTGAG
* * *
9145143 CCTCTGCTAAGAGGAACCCTTTTCAAGATGA
66 CCTCTGCTGAGAGGAGCCATTTTCAAGATGA
* ** * *
9145174 TTTTTAAAGTTGTTGAGCCTCTGTTAAAAGGAGCTTTTCCAAATGAAATTTTTAAAGTTGTTGAG
1 ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAATGAAATTTTTAAAGTTGTTGAG
* * *
9145239 CTTCTGCTGAGATGAGCCCTTTTTCAAGATGA
66 CCTCTGCTGAGAGGAG-CCATTTTCAAGATGA
* * ** * *
9145271 TTTTTAAAGTCGTTGAGCCTCTGTTGAGAAGAGCCCTTTTTCAAGATGAAATTTTTAAAGTTGTT
1 ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAG--CTTTTCCAA-ATGAAATTTTTAAAGTTGTT
* * *
9145336 GAGCCTCTGCTGAGAGGAACCCTTTTTAAGATGGAGA
63 GAGCCTCTGCTGAGAGGAGCCATTTTCAAGAT---GA
* ** * * *
9145373 GGAGCCCTTTTCAAGATGGATTTTAAAATTGTTAAGCCTCTGTTGAGAGGAACTTTTTCAGATGA
1 --A----TTTT-AA-A--G---------TTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAATGA
* * *
9145438 GATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCAA-AAGA
47 AATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCATTTTCAAGATGA
* * ** * * * * *
9145486 GATTTTAAAGTCGTTGAGTCTCTGTTGAGAGGAGTTTTTTTCAAGATGAGATTTTTAAAGCTATT
1 -ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAG-CTTTTCCAA-ATGAAATTTTTAAAGTTGTT
* * *
9145551 GAGCTTCTGTTGAGAGGAGCCTTTTTCAAGATAAGA
63 GAGCCTCTGCTGAGAGGAGCCATTTTCAAGAT--GA
* * * * * * *
9145587 ATTTTTAAAAATTGTTGAGCCTCTGCTGAGAGAAACTTTTCCAAAAGAGA-TTTTAAAGTTGTCG
1 A-TTTT-AAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAATGAAATTTTTAAAGTTGTTG
*
9145651 AGCCTCAAG-TGAGAGGAG-CATTTT
64 AGCCTC-TGCTGAGAGGAGCCATTTT
9145675 TTATTTGATC
Statistics
Matches: 572, Mismatches: 78, Indels: 83
0.78 0.11 0.11
Matches are distributed among these distances:
93 28 0.05
94 3 0.01
95 74 0.13
96 78 0.14
97 120 0.21
98 18 0.03
99 78 0.14
100 43 0.08
101 13 0.02
102 24 0.04
104 1 0.00
106 1 0.00
107 2 0.00
108 8 0.01
109 2 0.00
110 1 0.00
112 3 0.01
113 2 0.00
116 1 0.00
117 7 0.01
118 37 0.06
119 8 0.01
121 20 0.03
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (96 bp):
ATTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTCCAAATGAAATTTTTAAAGTTGTTGAG
CCTCTGCTGAGAGGAGCCATTTTCAAGATGA
Found at i:9145375 original size:22 final size:22
Alignment explanation
Indices: 9145347--9145392 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
9145337 AGCCTCTGCT
*
9145347 GAGAGGAACCCTTTTTAAGATG
1 GAGAGGAACCCTTTTCAAGATG
*
9145369 GAGAGGAGCCCTTTTCAAGATG
1 GAGAGGAACCCTTTTCAAGATG
9145391 GA
1 GA
9145393 TTTTAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (22 bp):
GAGAGGAACCCTTTTCAAGATG
Found at i:9145464 original size:118 final size:122
Alignment explanation
Indices: 9145247--9145471 Score: 343
Period size: 118 Copynumber: 1.9 Consensus size: 122
9145237 AGCTTCTGCT
* * * **
9145247 GAGATGAGCCCTTTTTCAAGATGATTTTTAAAGTCGTTGAGCCTCTGTTGAGAAGAGCCCTTTTT
1 GAGAGGAGCCCTTTTTCAAGATGATTTTTAAAATCGTTAAGCCTCTGTTGAGAAGAGAACTTTTT
9145312 CAAGATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAACCCTTTTTAAGATG
66 CAAGATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAACCCTTTTTAAGATG
*
9145369 GAGAGGAGCCC-TTTTCAAGATGGA-TTTTAAAATTGTTAAGCCTCTGTTGAG-AG-GAACTTTT
1 GAGAGGAGCCCTTTTTCAAGAT-GATTTTTAAAATCGTTAAGCCTCTGTTGAGAAGAGAACTTTT
*
9145430 TC-AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGA
65 TCAAGATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGA
9145472 GCTTTTTCAA
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
118 39 0.41
119 8 0.08
120 2 0.02
121 34 0.36
122 12 0.13
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (122 bp):
GAGAGGAGCCCTTTTTCAAGATGATTTTTAAAATCGTTAAGCCTCTGTTGAGAAGAGAACTTTTT
CAAGATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAACCCTTTTTAAGATG
Found at i:9145664 original size:149 final size:143
Alignment explanation
Indices: 9145380--9145668 Score: 373
Period size: 149 Copynumber: 2.0 Consensus size: 143
9145370 AGAGGAGCCC
* * *
9145380 TTTTCAAGATGGATTTTAAAATTGTTAAGCCTCTGTTGAGAGGAACTTTTTCAGATGAGATTTTT
1 TTTTCAAGATGGATTTTAAAACTATTAAGCCTCTGTTGAGAGGAACTTTTTCAGATAAGATTTTT
* * * * * * *
9145445 AAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAAAGAGATTTTAAAGTCGTTGAGTCTCTG
66 AAAATTGTTGAGCCTCTGCTGAGAGAAACTTTTCCAAAAGAGATTTTAAAGTCGTCGAGCCTCAG
9145510 TTGAGAGGAGTTT
131 TTGAGAGGAGTTT
* * * *
9145523 TTTTCAAGATGAGATTTTTAAAGCTATTGAGCTTCTGTTGAGAGGAGCCTTTTTCAAGATAAGAA
1 TTTTCAAGATG-GA-TTTTAAAACTATTAAGCCTCTGTTGAGAGGA-ACTTTTTC-AGATAAG-A
*
9145588 TTTTTAAAAATTGTTGAGCCTCTGCTGAGAGAAACTTTTCCAAAAGAGATTTTAAAGTTGTCGAG
61 TTTTT-AAAATTGTTGAGCCTCTGCTGAGAGAAACTTTTCCAAAAGAGATTTTAAAGTCGTCGAG
9145653 CCTCAAG-TGAGAGGAG
125 CCTC-AGTTGAGAGGAG
9145669 CATTTTTTAT
Statistics
Matches: 124, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
143 11 0.09
144 2 0.02
145 26 0.21
146 7 0.06
147 6 0.05
148 6 0.05
149 65 0.52
150 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (143 bp):
TTTTCAAGATGGATTTTAAAACTATTAAGCCTCTGTTGAGAGGAACTTTTTCAGATAAGATTTTT
AAAATTGTTGAGCCTCTGCTGAGAGAAACTTTTCCAAAAGAGATTTTAAAGTCGTCGAGCCTCAG
TTGAGAGGAGTTT
Found at i:9145835 original size:13 final size:12
Alignment explanation
Indices: 9145811--9145853 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
9145801 TATTAAATAC
9145811 AAAATACAAAAA
1 AAAATACAAAAA
9145823 AAAATACCAAAAA
1 AAAATA-CAAAAA
* *
9145836 AAGAACAGAAAAA
1 AA-AATACAAAAA
9145849 AAAAT
1 AAAAT
9145854 TTTGGGGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 8 0.31
13 15 0.58
14 3 0.12
ACGTcount: A:0.79, C:0.09, G:0.05, T:0.07
Consensus pattern (12 bp):
AAAATACAAAAA
Found at i:9146222 original size:19 final size:18
Alignment explanation
Indices: 9146181--9146227 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
9146171 CACGAAAAAG
* **
9146181 AAAAACAAAAGTCAGTTT
1 AAAAAAAAAAGTCAGAAT
9146199 AAAAAAAAAAGTCAGAAT
1 AAAAAAAAAAGTCAGAAT
9146217 ACAAAAAAAAA
1 A-AAAAAAAAA
9146228 TACAGTTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.70, C:0.09, G:0.09, T:0.13
Consensus pattern (18 bp):
AAAAAAAAAAGTCAGAAT
Found at i:9147102 original size:20 final size:18
Alignment explanation
Indices: 9147058--9147105 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
9147048 TTTTTTTTAA
9147058 AAGTAATAAATAAAAATT
1 AAGTAATAAATAAAAATT
* * *
9147076 GATTAATATATTAAAAATAT
1 AAGTAATA-AATAAAAAT-T
9147096 AAGTAATAAA
1 AAGTAATAAA
9147106 AATGAGAAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 3
0.71 0.19 0.10
Matches are distributed among these distances:
18 6 0.27
19 9 0.41
20 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
AAGTAATAAATAAAAATT
Found at i:9148202 original size:24 final size:24
Alignment explanation
Indices: 9148175--9148225 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
9148165 ATGAACTAAG
9148175 ATAATTGTAATAAT-TATTA-TTATA
1 ATAATT-T-ATAATATATTATTTATA
9148199 ATAATTTATAATATATTATTTATA
1 ATAATTTATAATATATTATTTATA
9148223 ATA
1 ATA
9148226 CGTTCAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.20
23 6 0.24
24 14 0.56
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAATTTATAATATATTATTTATA
Found at i:9148465 original size:19 final size:19
Alignment explanation
Indices: 9148437--9148490 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
9148427 TTATTTATTT
*
9148437 TAAATCATTAAAATAATAA
1 TAAATAATTAAAATAATAA
*
9148456 TAAATAATTAAAAT--TAG
1 TAAATAATTAAAATAATAA
9148473 TATAATAATTATAAATAA
1 TA-AATAATTA-AAATAA
9148491 CTTAAATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 4 0.14
18 8 0.28
19 17 0.59
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAATAATTAAAATAATAA
Found at i:9148510 original size:26 final size:28
Alignment explanation
Indices: 9148448--9148512 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
9148438 AAATCATTAA
*
9148448 AATAATAATAAATAATTAAAATTAGTAT
1 AATAATTATAAATAATTAAAATTAGTAT
9148476 AATAATTATAAATAACTT-AAA-TA-TAT
1 AATAATTATAAATAA-TTAAAATTAGTAT
*
9148502 AATAGTTATAA
1 AATAATTATAA
9148513 TATTATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 13 0.38
27 2 0.06
28 17 0.50
29 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (28 bp):
AATAATTATAAATAATTAAAATTAGTAT
Found at i:9148526 original size:23 final size:23
Alignment explanation
Indices: 9148500--9148565 Score: 62
Period size: 27 Copynumber: 2.7 Consensus size: 23
9148490 ACTTAAATAT
9148500 ATAATAGTTATAATATTATATAA
1 ATAATAGTTATAATATTATATAA
*
9148523 ATAATAAATATATAATATATTATATAA
1 ATAAT-AGT-TAT-A-ATATTATATAA
*
9148550 TTATATAG-TATAATAT
1 ATA-ATAGTTATAATAT
9148566 ACTAGTATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
23 9 0.26
24 3 0.09
25 6 0.17
26 1 0.03
27 14 0.40
28 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (23 bp):
ATAATAGTTATAATATTATATAA
Found at i:9148532 original size:27 final size:25
Alignment explanation
Indices: 9148492--9148565 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 25
9148482 TATAAATAAC
9148492 TTAAAT-ATATAATAGTTATAATATTA
1 TTAAATAATA-AATAG-TATAATATTA
9148518 TATAAATAATAAATA-TATAATA-TA
1 T-TAAATAATAAATAGTATAATATTA
* *
9148542 TTATATAATTATATAGTATAATAT
1 TTAAATAA-TAAATAGTATAATAT
9148566 ACTAGTATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
23 6 0.15
24 8 0.20
25 14 0.34
26 1 0.02
27 9 0.22
28 3 0.07
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (25 bp):
TTAAATAATAAATAGTATAATATTA
Found at i:9148546 original size:35 final size:35
Alignment explanation
Indices: 9148451--9148556 Score: 103
Period size: 35 Copynumber: 3.0 Consensus size: 35
9148441 TCATTAAAAT
* * *
9148451 AATAATAAATA-ATTAAAATTAGTATAATAAT-TATA
1 AATAATAAATATA-TAATA-TATTATAATATTATATA
*
9148486 AATAACTTAAATATATAATA-GTTATAATATTATATA
1 AATAA--TAAATATATAATATATTATAATATTATATA
9148522 AATAATAAATATATAATATATTAT-ATAATTATATA
1 AATAATAAATATATAATATATTATAAT-ATTATATA
9148557 GTATAATATA
Statistics
Matches: 60, Mismatches: 5, Indels: 12
0.78 0.06 0.16
Matches are distributed among these distances:
34 15 0.25
35 25 0.42
36 9 0.15
37 10 0.17
38 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.41
Consensus pattern (35 bp):
AATAATAAATATATAATATATTATAATATTATATA
Found at i:9148549 original size:20 final size:20
Alignment explanation
Indices: 9148512--9148566 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
9148502 AATAGTTATA
*
9148512 ATATTATATAA-ATAATAAAT
1 ATATAATATAATAT-ATAAAT
* *
9148532 ATATAATATATTATATAATT
1 ATATAATATAATATATAAAT
*
9148552 ATATAGTATAATATA
1 ATATAATATAATATA
9148567 CTAGTATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
ATATAATATAATATATAAAT
Found at i:9148561 original size:13 final size:13
Alignment explanation
Indices: 9148533--9148576 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
9148523 ATAATAAATA
*
9148533 TATAATATATTA-
1 TATAATATACTAG
9148545 TATAATTATA-TAG
1 TATAA-TATACTAG
9148558 TATAATATACTAG
1 TATAATATACTAG
9148571 TATAAT
1 TATAAT
9148577 TTATAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.38
13 18 0.62
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (13 bp):
TATAATATACTAG
Found at i:9148566 original size:25 final size:25
Alignment explanation
Indices: 9148503--9148581 Score: 74
Period size: 25 Copynumber: 3.1 Consensus size: 25
9148493 TAAATATATA
* *
9148503 ATAGTTATAATATTATATAAATAA-TAA
1 ATAG-TATAATA-TAT-TATATAATTAT
9148530 ATA-TATAATATATTATATAATTAT
1 ATAGTATAATATATTATATAATTAT
*
9148554 ATAGTATAATATACTAGTATAATT-T
1 ATAGTATAATATATTA-TATAATTAT
9148579 ATA
1 ATA
9148582 AATATGATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
23 6 0.13
24 8 0.17
25 22 0.48
26 7 0.15
27 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (25 bp):
ATAGTATAATATATTATATAATTAT
Found at i:9148716 original size:12 final size:12
Alignment explanation
Indices: 9148659--9148719 Score: 56
Period size: 12 Copynumber: 5.0 Consensus size: 12
9148649 GTATTTTAAC
9148659 TATA-TTAATAT
1 TATATTTAATAT
*
9148670 TA-ATTATAGTAT
1 TATATT-TAATAT
9148682 TATATTTAA-ATT
1 TATATTTAATA-T
9148694 ATATAATTTAATAT
1 -TAT-ATTTAATAT
9148708 TATATTTAATAT
1 TATATTTAATAT
9148720 ATTACTAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
10 1 0.02
11 4 0.10
12 19 0.46
13 9 0.22
14 7 0.17
15 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (12 bp):
TATATTTAATAT
Found at i:9148843 original size:20 final size:22
Alignment explanation
Indices: 9148804--9148845 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
9148794 AATTTAAATT
9148804 ATAATAATTACTAATTTATTATA
1 ATAATAATTACTAA-TTATTATA
9148827 ATAATAATTA-TAA-TATTAT
1 ATAATAATTACTAATTATTAT
9148846 TTTATTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAATAATTACTAATTATTATA
Found at i:9149139 original size:22 final size:21
Alignment explanation
Indices: 9149085--9149127 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
9149075 ATAAAACAAT
*
9149085 AAATATTTAATATTATTTTAC
1 AAATAATTAATATTATTTTAC
9149106 AAATAATATAATATTATTTTAC
1 AAATAAT-TAATATTATTTTAC
9149128 TATTTGATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
AAATAATTAATATTATTTTAC
Found at i:9149324 original size:25 final size:25
Alignment explanation
Indices: 9149218--9149306 Score: 78
Period size: 25 Copynumber: 3.5 Consensus size: 25
9149208 ATTATTAAAA
* *
9149218 TTATATTTAATATTAATATAATTTAAGTG
1 TTATA-TTAA-ATTAAT-TAATATAA-TC
9149247 TTAATATT-AATT-ATTAA-ATAA-C
1 TT-ATATTAAATTAATTAATATAATC
9149269 TTGATATTAAATTAATTAATATAATC
1 TT-ATATTAAATTAATTAATATAATC
9149295 TTATATTAAATT
1 TTATATTAAATT
9149307 GATAATACTA
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
22 7 0.13
23 4 0.08
24 8 0.15
25 17 0.33
26 5 0.10
27 3 0.06
28 1 0.02
29 4 0.08
30 3 0.06
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (25 bp):
TTATATTAAATTAATTAATATAATC
Found at i:9150361 original size:29 final size:24
Alignment explanation
Indices: 9150307--9150355 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
9150297 ATATTTGTTT
*
9150307 ATAATATATAATTATTATATATCA
1 ATAATATATAATTAGTATATATCA
9150331 ATAATATATTTAATTAAGTATATAT
1 ATAATATA--TAATT-AGTATATAT
9150356 TACAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
26 5 0.24
27 8 0.38
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
ATAATATATAATTAGTATATATCA
Found at i:9150497 original size:15 final size:15
Alignment explanation
Indices: 9150460--9150510 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
9150450 ATAATTATCA
9150460 AATTAATATA-AATTAT
1 AATTAATATATAA-T-T
* *
9150476 AATTTAATTTATTATT
1 AA-TTAATATATAATT
9150492 AATTAATATATAATT
1 AATTAATATATAATT
9150507 AATT
1 AATT
9150511 TTGAAATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 15 0.52
16 5 0.17
17 8 0.28
18 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTAATATATAATT
Found at i:9150654 original size:18 final size:18
Alignment explanation
Indices: 9150616--9150655 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
9150606 ATATATTTGT
*
9150616 TATAATTATTAAAAATAA
1 TATAATTATAAAAAATAA
9150634 TATAATTATCAAAAAAT-A
1 TATAATTAT-AAAAAATAA
9150652 TATA
1 TATA
9150656 TTTTATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TATAATTATAAAAAATAA
Found at i:9150714 original size:21 final size:21
Alignment explanation
Indices: 9150683--9150738 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
9150673 TTATTAATAT
*
9150683 ATTATAA-TAATA-AATTAAA
1 ATTATAATTAATATAACTAAA
*
9150702 TTTAATAATTAATATAACTAAA
1 ATT-ATAATTAATATAACTAAA
9150724 ATTATAATTAATATA
1 ATTATAATTAATATA
9150739 TAATAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 2 0.06
20 4 0.13
21 17 0.55
22 8 0.26
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTATAATTAATATAACTAAA
Found at i:9150746 original size:21 final size:20
Alignment explanation
Indices: 9150678--9150746 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
9150668 ATTACTTATT
*
9150678 AATATATTATAA-TAATA-A
1 AATAAATTATAATTAATATA
*
9150696 ATTAAATTTAATAATTAATATA
1 AATAAA-TT-ATAATTAATATA
*
9150718 ACTAAAATTATAATTAATATA
1 AAT-AAATTATAATTAATATA
9150739 TAATAAAT
1 -AATAAAT
9150747 AATTAATTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
18 4 0.10
19 2 0.05
20 4 0.10
21 21 0.51
22 7 0.17
23 3 0.07
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (20 bp):
AATAAATTATAATTAATATA
Found at i:9150789 original size:57 final size:55
Alignment explanation
Indices: 9150664--9150789 Score: 137
Period size: 57 Copynumber: 2.2 Consensus size: 55
9150654 TATTTTATTA
* *
9150664 TAATATTACTTATTAATATATTATAATAATAAATTAAATTTAATAATTAATATAAC
1 TAATATTA-TAATTAATATATAATAATAATAAATTAAATTTAATAATTAATATAAC
* * * * * *
9150720 TAAAATTATAATTAATATATAATAAATAATTAATTTATTTGTAATTATATAA-ATAAT
1 TAATATTATAATTAATATATAAT-AATAATAAATTAAATT-TAATAAT-TAATATAAC
9150777 TAATATTATAATT
1 TAATATTATAATT
9150790 TAAGTAGGAA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
55 13 0.22
56 20 0.34
57 22 0.38
58 3 0.05
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.46
Consensus pattern (55 bp):
TAATATTATAATTAATATATAATAATAATAAATTAAATTTAATAATTAATATAAC
Found at i:9150920 original size:18 final size:20
Alignment explanation
Indices: 9150872--9150920 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 20
9150862 TGTTAATTTA
9150872 TAATAT-AATT-ATAAATTG
1 TAATATAAATTAATAAATTG
9150890 TAATATAAAATTAAT-AATT-
1 TAATAT-AAATTAATAAATTG
9150909 TAATATAAATTA
1 TAATATAAATTA
9150921 TTATTAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 12 0.43
19 6 0.21
20 8 0.29
21 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
TAATATAAATTAATAAATTG
Found at i:9150923 original size:21 final size:22
Alignment explanation
Indices: 9150865--9150986 Score: 68
Period size: 19 Copynumber: 5.8 Consensus size: 22
9150855 AATATTATGT
9150865 TAATTT-ATAATATAATTA-T-A
1 TAATTTAAT-ATATAATTATTAA
9150885 -AATTGTAATATA-AA--ATTAA
1 TAATT-TAATATATAATTATTAA
*
9150904 TAATTTAATATA-AATTATTAT
1 TAATTTAATATATAATTATTAA
*
9150925 TAAGTT-ATA-ATAATTAATTAA
1 TAATTTAATATATAATT-ATTAA
* * *
9150946 TAAATTTTATATATTATTATAAA
1 T-AATTTAATATATAATTATTAA
9150969 TAATTATTAATAT-TAATT
1 TAA-T-TTAATATATAATT
9150987 TTCAGATATA
Statistics
Matches: 80, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
17 1 0.01
18 1 0.01
19 17 0.21
20 15 0.19
21 16 0.20
22 6 0.08
23 13 0.16
24 11 0.14
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TAATTTAATATATAATTATTAA
Found at i:9152057 original size:19 final size:18
Alignment explanation
Indices: 9152014--9152070 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
9152004 TCACATAAAT
9152014 TTATAATAATTATTA-AA
1 TTATAATAATTATTATAA
*
9152031 TAAT-ATAATTATATATAA
1 TTATAATAATTAT-TATAA
*
9152049 TTATAATAAATATTAATAA
1 TTATAATAATTATT-ATAA
9152068 TTA
1 TTA
9152071 AGTTATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 8 0.24
17 5 0.15
18 6 0.18
19 14 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TTATAATAATTATTATAA
Found at i:9152583 original size:13 final size:13
Alignment explanation
Indices: 9152535--9152583 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
9152525 GAGGATGGAT
9152535 ATTAAT-TAATTTA
1 ATTAATATAA-TTA
9152548 ATTAATTATAATTA
1 ATTAA-TATAATTA
* *
9152562 AATATTATAATTA
1 ATTAATATAATTA
9152575 ATTAATATA
1 ATTAATATA
9152584 CAATTCAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 20 0.67
14 7 0.23
15 3 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTAATATAATTA
Found at i:9152679 original size:21 final size:22
Alignment explanation
Indices: 9152643--9152684 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
9152633 TTTTAGTCCA
9152643 TAATTAAAATTATT-AATTAAT
1 TAATTAAAATTATTAAATTAAT
9152664 TAATTAAAA-TATTTAAATTAA
1 TAATTAAAATTA-TTAAATTAA
9152685 AATCAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 11 0.58
22 6 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATTAAAATTATTAAATTAAT
Found at i:9153643 original size:185 final size:179
Alignment explanation
Indices: 9152842--9153944 Score: 1013
Period size: 179 Copynumber: 6.1 Consensus size: 179
9152832 AATCTTATAA
* * ** *
9152842 TTCAAATA-TTCATAACTATTTGAATAATTATCTATTTCAAATAACTATGACCTATTGTTTTGTC
1 TTCAAATAGTT-ATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTC
** * * ** *
9152906 ATAAAACAATTGTATCAATTCATATAGGCTTATTTGAAATAAAATATTACTAATTTATTAATATT
65 ATAAAACAATTGT-TTTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT
* * * * *
9152971 CTAAAAATTAATGAGTAAGAGATTTTAAAAAATGAATTTTTTTACTGAACAAG
129 C-CAAAATTAATAAGTAAAAGA-TTTAAAAAATAAATTTGTTTACTGAACAAG
* * * * * *
9153024 TTTAAATAGTGATGACTATTTAAACAATTATCTATTTCAAATCGTTATGACATTTTGTTTTGTTA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
*** *
9153089 TAAAACAATTGTTTCTATTCATACAAGCTTATTTTGAATAAAATAAT--TAAATTAATTAATATT
66 TAAAACAATTGTTT-TATTCATACAAGCTTATTCAAAATAAAATAATACT-AATTTATTAATATT
* ** *
9153152 CCAAAATTTAATAAGTAAAA-ATTTTAAAAATAAATTTGTTTTTTGAACATG
129 CCAAAA-TTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACTGAACAAG
* * * * * *
9153203 TTCAAATAGTTCTGACTATTTGAACAATTATTTGTTTCAAACAATTATGACCTTTTGTTTTGTGA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
* * * *
9153268 TAAACCAATT-TTTTCTGTCCATACAAGCTTATTTC-GAATAAAGTAAT--TAAATTTATTAATA
66 TAAAACAATTGTTTTAT-T-CATACAAGCTTA-TTCAAAATAAAATAATACT-AATTTATTAATA
** *
9153329 TTCCAAAATTTAATAAGTAAAA-ATTTAAAAAATAAATTTGTTTTTTGAACATG
127 TTCCAAAA-TTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACTGAACAAG
* * *
9153382 TTCAAATAGATT-TGACTATTTGAGCAATTATCTATTTTAAATAGTTATGACCTTTTGTTTTGTG
1 TTCAAATAG-TTATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTC
* * * *
9153446 ATGAACCAATTGTTTT-TGTCTATATAAGCTTATTCAAAATAAAATAATACTAATTTAATAATAT
65 ATAAAACAATTGTTTTAT-TC-ATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT
* * **
9153510 TCCAACAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACCGAGTAAG
128 TCCAA-AATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACTGAACAAG
* * * * * * *
9153563 CTCAAATAGTTATAACTGTTTGAACAATTTTTTTTTTATTTCTAATAGTTATGAACTTTTGTTTT
1 TTCAAATAGTTATGACTATTTGAACAA----TTATCTATTTCAAATAGTTATGACCTTTTGTTTT
* *
9153628 GTCATAAAACAATTGTTTGTATTCATACAAGTTTATTCAAAATAAAATAATACTACTTTATTAAT
62 GTCATAAAACAATTGTTT-TATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAAT
* * ** * *
9153693 ATTTTGC-AAATTAATAGGTAGGAGATTTAAAAAATAAATCTGTTTA-TCAAACAAG
126 A--TTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACT-GAACAAG
* * * * *
9153748 TTCAAATAGTCATGTCTATTAGAA-TATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCA
1 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
* * * * ** *
9153812 TAAAATAATTGTTTTTGTTCATAC-AGAATTATTCAAAATACAATAATTTTGATTTATTAATATT
66 TAAAACAATTG-TTTTATTCATACAAG-CTTATTCAAAATAAAATAATACTAATTTATTAATA-T
** * *** *
9153876 TTAAAAATTAATAAG----AGATTTAAAAACTAAATCAATTTACTAAACCAA-
128 TCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACTGAA-CAAG
9153924 TTCAAATAGTTATGACTATTT
1 TTCAAATAGTTATGACTATTT
9153945 TAATTAATTA
Statistics
Matches: 775, Mismatches: 116, Indels: 66
0.81 0.12 0.07
Matches are distributed among these distances:
176 42 0.05
177 6 0.01
178 8 0.01
179 268 0.35
180 136 0.18
181 76 0.10
182 90 0.12
183 1 0.00
184 1 0.00
185 139 0.18
186 4 0.01
187 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (179 bp):
TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
TAAAACAATTGTTTTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCC
AAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACTGAACAAG
Found at i:9154087 original size:15 final size:15
Alignment explanation
Indices: 9154044--9154091 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 15
9154034 AATTGTTATT
9154044 ATTAAGATAATAATA
1 ATTAAGATAATAATA
9154059 ATGTTATA-ATTAATAATA
1 A--TTA-AGA-TAATAATA
9154077 ATTAAGATAATAATA
1 ATTAAGATAATAATA
9154092 TAGTTTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
15 10 0.36
16 4 0.14
17 4 0.14
18 10 0.36
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (15 bp):
ATTAAGATAATAATA
Found at i:9154476 original size:22 final size:22
Alignment explanation
Indices: 9154445--9154489 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
9154435 ATATCTCAAT
*
9154445 TATTAATAATAATTATTATATA
1 TATTAATAATAATTAATATATA
*
9154467 TATTACTAATAATTAATATATA
1 TATTAATAATAATTAATATATA
9154489 T
1 T
9154490 TAGTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TATTAATAATAATTAATATATA
Found at i:9155081 original size:18 final size:17
Alignment explanation
Indices: 9155019--9155082 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 17
9155009 CAATTATTAA
9155019 ATATAAATT-TATTA-T
1 ATATAAATTATATTATT
* * * *
9155034 ATATTAACTATAATACT
1 ATATAAATTATATTATT
*
9155051 ATA-AAATTTTATTATT
1 ATATAAATTATATTATT
9155067 AATATAAATTATATTA
1 -ATATAAATTATATTA
9155083 GGTTTAGTAA
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
15 7 0.19
16 12 0.33
17 7 0.19
18 10 0.28
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATAAATTATATTATT
Found at i:9155504 original size:19 final size:19
Alignment explanation
Indices: 9155480--9155528 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
9155470 TTATGACCTT
9155480 TTGTTTTATCACAAAACAA
1 TTGTTTTATCACAAAACAA
* * *
9155499 TTGTTTCATCATAAAATAA
1 TTGTTTTATCACAAAACAA
9155518 TTGTTTCTATC
1 TTGTTT-TATC
9155529 TGTACTAGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 22 0.88
20 3 0.12
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (19 bp):
TTGTTTTATCACAAAACAA
Found at i:9155658 original size:16 final size:17
Alignment explanation
Indices: 9155626--9155658 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9155616 AACAAGTACA
9155626 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
9155644 AATAATTAT-CTATTT
1 AATAATTATACTATTT
9155659 CTAATCGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:9156351 original size:19 final size:20
Alignment explanation
Indices: 9156311--9156356 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
9156301 TAAGTTTAAA
9156311 ATATAATATAATATTAAGTT
1 ATATAATATAATATTAAGTT
*
9156331 AT-TAATATAAT-TTATGTTT
1 ATATAATATAATATTAAG-TT
9156350 ATATAAT
1 ATATAAT
9156357 TGTTATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 4 0.17
19 13 0.57
20 6 0.26
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (20 bp):
ATATAATATAATATTAAGTT
Found at i:9156439 original size:16 final size:16
Alignment explanation
Indices: 9156390--9156441 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 16
9156380 TACTATTTAA
9156390 TTATATATTAAATTAT
1 TTATATATTAAATTAT
* *
9156406 TTAATTATGTTTGTAATTAT
1 TT-A-TAT-ATT-AAATTAT
9156426 TTATATATTAAATTAT
1 TTATATATTAAATTAT
9156442 AATTATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
16 8 0.29
17 3 0.11
18 6 0.21
19 3 0.11
20 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (16 bp):
TTATATATTAAATTAT
Found at i:9157122 original size:18 final size:18
Alignment explanation
Indices: 9157099--9157133 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9157089 GTCCAATTAA
9157099 ATTATATAATAAATAATT
1 ATTATATAATAAATAATT
*
9157117 ATTATATAATATATAAT
1 ATTATATAATAAATAAT
9157134 ATACAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTATATAATAAATAATT
Found at i:9157134 original size:25 final size:25
Alignment explanation
Indices: 9157101--9157176 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 25
9157091 CCAATTAAAT
*
9157101 TATATAATAAATAATTATTATATA-A
1 TATATAATAAATAATTATAAT-TACA
* *
9157126 TATATAATATACAATTATAATTACA
1 TATATAATAAATAATTATAATTACA
*
9157151 TATTATAATAATTAA-TATAATT-CA
1 TA-TATAATAAATAATTATAATTACA
9157175 TA
1 TA
9157177 AAATATTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.14
25 28 0.65
26 9 0.21
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TATATAATAAATAATTATAATTACA
Found at i:9157146 original size:13 final size:14
Alignment explanation
Indices: 9157114--9157160 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
9157104 ATAATAAATA
*
9157114 ATTATTATATA-AT
1 ATTATAATATACAT
9157127 A-TATAATATACA-
1 ATTATAATATACAT
9157139 ATTATAAT-TACAT
1 ATTATAATATACAT
9157152 ATTATAATA
1 ATTATAATA
9157161 ATTAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATATACAT
Found at i:9157182 original size:47 final size:44
Alignment explanation
Indices: 9157092--9157182 Score: 103
Period size: 47 Copynumber: 2.0 Consensus size: 44
9157082 TATATATGTC
* *
9157092 CAATTAAATTATATAATAAATAATTATTATATAATATATAATATA
1 CAATTAAATTACATAATAAATAATTA-TATATAATATAAAATATA
*
9157137 CAATTATAATTACATATTATAATAATTA-ATATAATTCATAAAATAT
1 CAATTA-AATTACATAATA-AATAATTATATATAA-T-ATAAAATAT
9157183 TATTAATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
45 12 0.31
46 11 0.28
47 16 0.41
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (44 bp):
CAATTAAATTACATAATAAATAATTATATATAATATAAAATATA
Found at i:9157274 original size:18 final size:19
Alignment explanation
Indices: 9157251--9157286 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
9157241 AATTATTATA
9157251 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
9157269 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
9157287 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:9157903 original size:14 final size:14
Alignment explanation
Indices: 9157861--9157911 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
9157851 GTTGATTAAT
* *
9157861 TAAATATAATAATA
1 TAAATATTATAGTA
*
9157875 TTAAA-ATTATTGTA
1 -TAAATATTATAGTA
*
9157889 TAGATATTATAGTA
1 TAAATATTATAGTA
9157903 TAAATATTA
1 TAAATATTA
9157912 ATTTATTAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
13 3 0.10
14 22 0.76
15 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (14 bp):
TAAATATTATAGTA
Found at i:9157962 original size:22 final size:21
Alignment explanation
Indices: 9157921--9157963 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
9157911 AATTTATTAG
**
9157921 TAATTTATTAATAAGTAAAAT
1 TAATTTATTAATAACAAAAAT
9157942 TAATATTATTAATAACAAAAAT
1 TAAT-TTATTAATAACAAAAAT
9157964 ATTTGTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATTTATTAATAACAAAAAT
Found at i:9158198 original size:17 final size:16
Alignment explanation
Indices: 9158176--9158221 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 16
9158166 ATAATGATTT
*
9158176 ATTTATTGATTAATTAA
1 ATTTATT-AATAATTAA
9158193 ATTTATTAATAATTAA
1 ATTTATTAATAATTAA
9158209 ATAATTATTAATA
1 AT--TTATTAATA
9158222 TCATATGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 10 0.38
17 7 0.27
18 9 0.35
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATTTATTAATAATTAA
Found at i:9158427 original size:21 final size:21
Alignment explanation
Indices: 9158385--9158434 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
9158375 ATTTTTGTTA
** *
9158385 ATTTAATTTAATATTAATTAAT
1 ATTTAA-TTAATAAAAAATAAT
9158407 ATTTAATTAATAAAAAATAAT
1 ATTTAATTAATAAAAAATAAT
9158428 A-TTAATT
1 ATTTAATT
9158435 TTCATATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 6 0.24
21 13 0.52
22 6 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTAATTAATAAAAAATAAT
Found at i:9159256 original size:18 final size:18
Alignment explanation
Indices: 9159228--9159335 Score: 73
Period size: 19 Copynumber: 5.9 Consensus size: 18
9159218 AAATAATAAT
9159228 TTATAAATTATTATAATTA
1 TTAT-AATTATTATAATTA
9159247 TTATAATTATTATAATATA
1 TTATAATTATTATAAT-TA
*
9159266 TTATTAATTA-TATATATAA
1 TTA-TAATTATTATA-ATTA
*
9159285 TTA-AATTAATATATAAATA
1 TTATAATT-AT-TATAATTA
* *
9159304 TTA-ATTTATAATCAA--A
1 TTATAATTATTAT-AATTA
*
9159320 TTATAATTATCATAAT
1 TTATAATTATTATAAT
9159336 GCTATTATTA
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
16 6 0.08
17 13 0.18
18 17 0.23
19 25 0.34
20 12 0.16
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
TTATAATTATTATAATTA
Found at i:9159262 original size:38 final size:37
Alignment explanation
Indices: 9159220--9159306 Score: 88
Period size: 38 Copynumber: 2.3 Consensus size: 37
9159210 TAGTTAATAA
* *
9159220 ATAATA-ATTTATAAATTAT-TATAATTATTATAATTATT
1 ATAATATA-TTATAAATTATATAT-ATAATTA-AATTAAT
*
9159258 ATAATATATTATTAATTATATATATAATTAAATTAAT
1 ATAATATATTATAAATTATATATATAATTAAATTAAT
*
9159295 ATATAAATATTA
1 ATA-ATATATTA
9159307 ATTTATAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
37 9 0.21
38 29 0.69
39 4 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (37 bp):
ATAATATATTATAAATTATATATATAATTAAATTAAT
Found at i:9159280 original size:16 final size:16
Alignment explanation
Indices: 9159236--9159313 Score: 60
Period size: 16 Copynumber: 5.0 Consensus size: 16
9159226 ATTTATAAAT
9159236 TATTA-TAATTAT-TA
1 TATTATTAATTATATA
9159250 TA--ATT-ATTATAATA
1 TATTATTAATTAT-ATA
9159264 TATTATTAATTATATA
1 TATTATTAATTATATA
*
9159280 TATAATTAAATTAATATA
1 TATTATT-AATT-ATATA
*
9159298 TAAATATTAATT-TATA
1 T-ATTATTAATTATATA
9159314 ATCAAATTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
12 6 0.12
13 1 0.02
14 6 0.12
16 16 0.31
17 9 0.17
18 10 0.19
19 4 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATTATTAATTATATA
Found at i:9159287 original size:29 final size:28
Alignment explanation
Indices: 9159206--9159287 Score: 73
Period size: 29 Copynumber: 2.9 Consensus size: 28
9159196 ACATATATTC
*
9159206 ATATTAGTTAA-TAAATA-ATAATTTATAA
1 ATATTA-TTAATTATATATATAA-TTATAA
*
9159234 ATTATTA-TAATTAT-TATAATTATTATAA
1 A-TATTATTAATTATATAT-ATAATTATAA
9159262 TATATTATTAATTATATATATAATTA
1 -ATATTATTAATTATATATATAATTA
9159288 AATTAATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
27 5 0.11
28 14 0.32
29 22 0.50
30 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (28 bp):
ATATTATTAATTATATATATAATTATAA
Found at i:9159322 original size:16 final size:15
Alignment explanation
Indices: 9159259--9159322 Score: 58
Period size: 16 Copynumber: 4.1 Consensus size: 15
9159249 ATAATTATTA
* *
9159259 TAATATATTATTAAT
1 TAATATATAATAAAT
9159274 TATATATATAATTAAAT
1 TA-ATATATAA-TAAAT
*
9159291 TAATATATAA-ATAT
1 TAATATATAATAAAT
*
9159305 TAATTTATAATCAAAT
1 TAATATATAAT-AAAT
9159321 TA
1 TA
9159323 TAATTATCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
14 12 0.30
15 2 0.05
16 20 0.50
17 6 0.15
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATATATAATAAAT
Found at i:9159367 original size:82 final size:80
Alignment explanation
Indices: 9159216--9159367 Score: 184
Period size: 82 Copynumber: 1.9 Consensus size: 80
9159206 ATATTAGTTA
* * *
9159216 ATAAATAATAATTTATAAATTATTATAATTATTATAATTATTATAATATATTATTAATTATATAT
1 ATAAATAATAATTTATAAATAATTATAATTATCATAATTATTAT-ATATATTATTAATTATATAA
9159281 ATAATTAAATTAATAT
65 ATAATTAAATTAATAT
* *
9159297 ATAAATATTAATTTAT-AATCAAATTATAATTATCATAATGCTATTAT-TATACTTATTTATT-T
1 ATAAATAATAATTTATAAAT--AATTATAATTATCATAAT--TATTATATATA-TTATTAATTAT
9159359 ATAAATAAT
61 ATAAATAAT
9159368 ATATAAATTA
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
80 3 0.05
81 15 0.25
82 29 0.48
83 8 0.13
84 6 0.10
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.49
Consensus pattern (80 bp):
ATAAATAATAATTTATAAATAATTATAATTATCATAATTATTATATATATTATTAATTATATAAA
TAATTAAATTAATAT
Found at i:9159393 original size:67 final size:66
Alignment explanation
Indices: 9159222--9159394 Score: 170
Period size: 73 Copynumber: 2.5 Consensus size: 66
9159212 GTTAATAAAT
* * * * *
9159222 AATAATTTATAAATTATTATAATTATTATAATTATTATAATATATTATTAATTATATATATAATT
1 AATAATATATAAATTATTTTAATAAATATAATTATCATAATATATTATTAATTATATATATAATT
9159287 A
66 A
*
9159288 AATTAATATATAAATATTAATTTATAATCAAATTATAATTATCATAATGCTATTATTATACTTAT
1 AA-TAATATAT-AA-ATT-ATTT-TAAT-AAA-TATAATTATCATAAT-ATATTATTA-A-TTAT
* *
9159353 TTAT-TTA-TA
56 ATATATAATTA
9159362 AATAATATATAAATTATTTTAATAAATATAATT
1 AATAATATATAAATTATTTTAATAAATATAATT
9159395 TTTTAATAAT
Statistics
Matches: 89, Mismatches: 8, Indels: 19
0.77 0.07 0.16
Matches are distributed among these distances:
66 2 0.02
67 14 0.16
68 5 0.06
69 7 0.08
70 7 0.08
71 7 0.08
72 3 0.03
73 22 0.25
74 12 0.13
75 3 0.03
76 7 0.08
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (66 bp):
AATAATATATAAATTATTTTAATAAATATAATTATCATAATATATTATTAATTATATATATAATT
A
Found at i:9159398 original size:17 final size:20
Alignment explanation
Indices: 9159362--9159404 Score: 65
Period size: 17 Copynumber: 2.3 Consensus size: 20
9159352 TTTATTTATA
9159362 AATAATATATAAATTATTTT
1 AATAATATATAAATTATTTT
9159382 AATAA-ATAT-AATT-TTTT
1 AATAATATATAAATTATTTT
9159399 AATAAT
1 AATAAT
9159405 TAGTTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 9 0.41
18 4 0.18
19 4 0.18
20 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AATAATATATAAATTATTTT
Found at i:9159836 original size:175 final size:177
Alignment explanation
Indices: 9159571--9159921 Score: 410
Period size: 175 Copynumber: 2.0 Consensus size: 177
9159561 GATTATTATT
* * *
9159571 ATTTGAATAATTGTCTATTTAAAAAAGTTATAACTTTTAATTTGTCATAAAACAATTGTTTTAGT
1 ATTTGAATAATTATCTATTTAAAAAAGTTATAACTTTTAATTTATCATAAAACAATTATTTTA-T
* * * *
9159636 TAATACAAGCTTAGATGGAATAAAATAATACTAATTTATT-ATATTTCCTAAATTAATAAG-A-A
65 TAATACAAGCTTAGATGAAATAAAATAATACTAATTGATTAATATTT-CAAAAATAATAAGAACA
9159698 -A-TTAAAAAATAAATCTATTTACCAAATCAATTAAAATAATTATGGCC
129 GATTTAAAAAATAAATCTATTTACCAAATCAATTAAAATAATTATGGCC
** * * *
9159745 ATTTGAATAATTATCTATTTCAAATCA-TTATGATCTTTTATTTTATCATAATACAATTATTTT-
1 ATTTGAATAATTATCTATTT-AAAAAAGTTAT-AACTTTTAATTTATCATAAAACAATTATTTTA
** * *
9159808 TTATCATACAAGCTTATTTGAAATAAAATAATACTAATTGCTTAATATTTCAAAAATAATAGGTA
64 TTA--ATACAAGCTTAGATGAAATAAAATAATACTAATTGATTAATATTTCAAAAATAATAAG-A
* * * *
9159873 ACAGATTTAAATAATAAATCTGTTTACCAAATCAGTTCAAATAATTATG
126 ACAGATTTAAAAAATAAATCTATTTACCAAATCAATTAAAATAATTATG
9159922 ACTATTTATT
Statistics
Matches: 147, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
173 3 0.02
174 23 0.16
175 73 0.50
176 6 0.04
177 1 0.01
178 1 0.01
179 1 0.01
180 39 0.27
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (177 bp):
ATTTGAATAATTATCTATTTAAAAAAGTTATAACTTTTAATTTATCATAAAACAATTATTTTATT
AATACAAGCTTAGATGAAATAAAATAATACTAATTGATTAATATTTCAAAAATAATAAGAACAGA
TTTAAAAAATAAATCTATTTACCAAATCAATTAAAATAATTATGGCC
Found at i:9160280 original size:13 final size:13
Alignment explanation
Indices: 9160262--9160286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9160252 AGTAAAATAT
9160262 TAATAATTTTATC
1 TAATAATTTTATC
9160275 TAATAATTTTAT
1 TAATAATTTTAT
9160287 AATAAATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATAATTTTATC
Found at i:9160366 original size:17 final size:18
Alignment explanation
Indices: 9160334--9160367 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9160324 TTACTATTAA
*
9160334 TAAATATAATTAATAATT
1 TAAATATAAATAATAATT
9160352 TAAAT-TAAATAATAAT
1 TAAATATAAATAATAAT
9160368 ATTTTGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATATAAATAATAATT
Found at i:9160686 original size:17 final size:16
Alignment explanation
Indices: 9160663--9160706 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
9160653 TAAAATTGTT
9160663 AATATTAATAATAG-AA
1 AATATTAATAAT-GTAA
9160679 ATATATTAAT-ATGTAA
1 A-ATATTAATAATGTAA
9160695 AATATTAATAAT
1 AATATTAATAAT
9160707 TAAGAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.36
16 8 0.32
17 8 0.32
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (16 bp):
AATATTAATAATGTAA
Found at i:9160704 original size:23 final size:22
Alignment explanation
Indices: 9160661--9160709 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
9160651 TTTAAAATTG
9160661 TTAATATTAATAATAGAAATATA
1 TTAATATTAATAATAGAAATA-A
**
9160684 TTAATATGTAA-AATATTAATAA
1 TTAATAT-TAATAATAGAAATAA
9160706 TTAA
1 TTAA
9160710 GAATTAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 15 0.65
24 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (22 bp):
TTAATATTAATAATAGAAATAA
Found at i:9161543 original size:29 final size:27
Alignment explanation
Indices: 9161507--9161570 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
9161497 TTTAATAAAT
*
9161507 ATAATTATCATTAATAATAATTATTTA
1 ATAATTATCATTAATAATAATAATTTA
* * *
9161534 ACTATATTATTATTTATTATAATAATTTA
1 A-TA-ATTATCATTAATAATAATAATTTA
9161563 ATAATTAT
1 ATAATTAT
9161571 TGAAATATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 6 0.19
28 4 0.13
29 21 0.68
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (27 bp):
ATAATTATCATTAATAATAATAATTTA
Found at i:9161570 original size:20 final size:20
Alignment explanation
Indices: 9161521--9161571 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
9161511 TTATCATTAA
9161521 TAATAATTATTTAACTATAT
1 TAATAATTATTTAACTATAT
* *
9161541 TATTATTTATTATAA-TA-ATT
1 TAATAATTATT-TAACTATA-T
9161561 TAATAATTATT
1 TAATAATTATT
9161572 GAAATATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATAATTATTTAACTATAT
Done.