Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 52 of 121
Found at i:9161701 original size:29 final size:29
Alignment explanation
Indices: 9161604--9161733 Score: 78
Period size: 29 Copynumber: 4.6 Consensus size: 29
9161594 TTTCAAATAG
*
9161604 AATT-ATATTAT-ATATTTTATTTATAAT
1 AATTAATATTATAATATTATATTTATAAT
* * * *
9161631 AGTTTGAA-ATTATATTAATTAGT-TATATAGT
1 A-ATT-AATATTATAAT-ATTA-TATTTATAAT
* *
9161662 AACTAACATTATAATATTATATTTATAAT
1 AATTAATATTATAATATTATATTTATAAT
* * *
9161691 AATTAATATTA-ATTAAT-TATTAAT-AT
1 AATTAATATTATAATATTATATTTATAAT
9161717 AATTAATA-TATAATATT
1 AATTAATATTATAATATT
9161734 TGAATTACTC
Statistics
Matches: 77, Mismatches: 17, Indels: 19
0.68 0.15 0.17
Matches are distributed among these distances:
25 2 0.03
26 14 0.18
27 7 0.09
28 7 0.09
29 26 0.34
30 10 0.13
31 10 0.13
32 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (29 bp):
AATTAATATTATAATATTATATTTATAAT
Found at i:9161714 original size:21 final size:22
Alignment explanation
Indices: 9161671--9161719 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
9161661 TAACTAACAT
*
9161671 TATAATATTATATTTATAATAA
1 TATAATATTATATTAATAATAA
*
9161693 T-TAATATTA-ATTAATTATTAA
1 TATAATATTATATTAA-TAATAA
9161714 TATAAT
1 TATAAT
9161720 TAATATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.17
21 14 0.61
22 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TATAATATTATATTAATAATAA
Found at i:9162352 original size:16 final size:17
Alignment explanation
Indices: 9162331--9162363 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9162321 TAATGATTTG
9162331 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
9162347 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
9162364 TGAACTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:9162621 original size:28 final size:28
Alignment explanation
Indices: 9162565--9162627 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
9162555 CAAATTTATT
*
9162565 TTTTAATTATAAATTAAAATTTATTATA
1 TTTTAATTATAAATTAAAATTTATAATA
*
9162593 TTTTAATTA-AAGATTATAA-TTATAAATA
1 TTTTAATTATAA-ATTAAAATTTAT-AATA
9162621 TTATTAA
1 TT-TTAA
9162628 ATATTTACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 6 0.20
28 20 0.67
29 4 0.13
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (28 bp):
TTTTAATTATAAATTAAAATTTATAATA
Found at i:9162673 original size:14 final size:14
Alignment explanation
Indices: 9162649--9162693 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
9162639 TTATAATATA
9162649 TAAATTA-TATTAT
1 TAAATTAGTATTAT
9162662 TAAATTAGTATTAT
1 TAAATTAGTATTAT
*
9162676 TATA-TAGATATTAT
1 TAAATTAG-TATTAT
9162690 TAAA
1 TAAA
9162694 ATAGATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (14 bp):
TAAATTAGTATTAT
Found at i:9163034 original size:16 final size:15
Alignment explanation
Indices: 9163015--9163171 Score: 65
Period size: 16 Copynumber: 9.9 Consensus size: 15
9163005 ATATAATTAT
9163015 TTATAATTATAACTAA
1 TTATAATTATAA-TAA
* *
9163031 TTATATAATT-TATTGA
1 -T-TATAATTATAATAA
9163047 TT-TATATTATAAATAAA
1 TTATA-ATTAT-AAT-AA
* *
9163064 GTATAATATATAATAT
1 TTATAAT-TATAATAA
*
9163080 TTATAATTATAATTA
1 TTATAATTATAATAA
*
9163095 TT-TAATAATAATAA
1 TTATAATTATAATAA
9163109 TTATTAATAATATAACTAA
1 TTA-TAAT--TATAA-TAA
*
9163128 TTGA-AATTAT-ATTA
1 TT-ATAATTATAATAA
*
9163142 GT-TAATTATAATATA
1 TTATAATTATAATA-A
*
9163157 TTATATTTATTAATA
1 TTATAATTA-TAATA
9163172 TACCATTAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 36
0.66 0.11 0.23
Matches are distributed among these distances:
13 8 0.08
14 21 0.20
15 13 0.12
16 23 0.22
17 15 0.14
18 19 0.18
19 5 0.05
20 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (15 bp):
TTATAATTATAATAA
Found at i:9163041 original size:25 final size:25
Alignment explanation
Indices: 9162983--9163043 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
9162973 ATTATTATAT
*
9162983 TAATTATTTATATATTTAACAAATA
1 TAATAATTTATATATTTAACAAATA
* *
9163008 TAATTATTTATA-ATTATAACTAAT-
1 TAATAATTTATATATT-TAACAAATA
9163032 TATATAATTTAT
1 TA-ATAATTTAT
9163044 TGATTTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 27 0.84
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (25 bp):
TAATAATTTATATATTTAACAAATA
Found at i:9163103 original size:33 final size:34
Alignment explanation
Indices: 9163005--9163129 Score: 113
Period size: 32 Copynumber: 3.8 Consensus size: 34
9162995 TATTTAACAA
*
9163005 ATATAATTATTTATAATTATAACTAATTATATAAT
1 ATATAATTATTTATAATTATAATTAATTA-ATAAT
* *
9163040 -T-T-ATTGATTTAT-ATTATAAATAAAGT-ATAAT
1 ATATAATT-ATTTATAATTAT-AATTAATTAATAAT
*
9163071 ATATAA-TATTTATAATTATAATTATTTAATAAT
1 ATATAATTATTTATAATTATAATTAATTAATAAT
* *
9163104 A-ATAATTATTAATAA-TATAACTAATT
1 ATATAATTATTTATAATTATAATTAATT
9163130 GAAATTATAT
Statistics
Matches: 73, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
31 5 0.07
32 33 0.45
33 33 0.45
34 2 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (34 bp):
ATATAATTATTTATAATTATAATTAATTAATAAT
Found at i:9163489 original size:20 final size:19
Alignment explanation
Indices: 9163464--9163539 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 19
9163454 TTACTTTAAA
9163464 TTTATAAATAATTTAATAAT
1 TTTATAAATAA-TTAATAAT
9163484 TTTATAATATTAATT-ATAAT
1 TTTATAA-A-TAATTAATAAT
* * *
9163504 ATTATAAGTATTATAAT-AT
1 TTTATAAATAAT-TAATAAT
*
9163523 TTTATAATTAATTAATA
1 TTTATAAATAATTAATA
9163540 GTATAAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
18 7 0.16
19 12 0.27
20 20 0.44
21 3 0.07
22 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (19 bp):
TTTATAAATAATTAATAAT
Found at i:9163542 original size:29 final size:28
Alignment explanation
Indices: 9163464--9163543 Score: 74
Period size: 29 Copynumber: 2.7 Consensus size: 28
9163454 TTACTTTAAA
* *
9163464 TTTATAAATAATTTAATAATTTTATAATAT
1 TTTAT-AATAA-TTAATAGTATTATAATAT
9163494 TAATTATAAT-ATT-ATAAGTATTATAATAT
1 T--TTATAATAATTAAT-AGTATTATAATAT
9163523 TTTATAATTAATTAATAGTAT
1 TTTATAA-TAATTAATAGTAT
9163544 AAAATTAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
27 6 0.14
28 3 0.07
29 22 0.52
30 4 0.10
31 3 0.07
32 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
TTTATAATAATTAATAGTATTATAATAT
Found at i:9164257 original size:15 final size:14
Alignment explanation
Indices: 9164239--9164285 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
9164229 AATTATATAA
9164239 TATATTTAAGTTATT
1 TATATTTAA-TTATT
*
9164254 TATAATT-ATTATAT
1 TATATTTAATTAT-T
9164268 TATATTTTAATTATT
1 TATA-TTTAATTATT
9164283 TAT
1 TAT
9164286 TATTATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
13 4 0.15
14 6 0.22
15 12 0.44
16 5 0.19
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (14 bp):
TATATTTAATTATT
Found at i:9164272 original size:29 final size:29
Alignment explanation
Indices: 9164226--9164297 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
9164216 TATTATCCTA
9164226 TATAATTA-TATAATATA-TTTAAGTTATT
1 TATAATTATTATAATATATTTTAA-TTATT
*
9164254 TATAATTATTATATTATATTTTAATTATT
1 TATAATTATTATAATATATTTTAATTATT
* *
9164283 TATTATTATTTTAAT
1 TATAATTATTATAAT
9164298 GATTAGAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 8 0.21
29 25 0.66
30 5 0.13
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (29 bp):
TATAATTATTATAATATATTTTAATTATT
Found at i:9164278 original size:19 final size:20
Alignment explanation
Indices: 9164249--9164302 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
9164239 TATATTTAAG
9164249 TTATTTATAATTATTATATTA
1 TTATTT-TAATTATTATATTA
9164270 -TATTTTAATTATT-TATTA
1 TTATTTTAATTATTATATTA
*
9164288 TTATTTTAATGATTA
1 TTATTTTAATTATTA
9164303 GAAATAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 5 0.17
19 20 0.67
20 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTATTTTAATTATTATATTA
Found at i:9164292 original size:10 final size:10
Alignment explanation
Indices: 9164226--9164297 Score: 57
Period size: 10 Copynumber: 7.6 Consensus size: 10
9164216 TATTATCCTA
9164226 TATAATTA--
1 TATAATTATT
9164234 TATAATATATT
1 TATAAT-TATT
*
9164245 TA-AGTTATT
1 TATAATTATT
9164254 TATAATTA-T
1 TATAATTATT
9164263 TAT-ATTATAT
1 TATAATTAT-T
*
9164273 TTTAATTATT
1 TATAATTATT
*
9164283 TATTATTATT
1 TATAATTATT
9164293 T-TAAT
1 TATAAT
9164298 GATTAGAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
8 10 0.20
9 15 0.29
10 19 0.37
11 7 0.14
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (10 bp):
TATAATTATT
Found at i:9164558 original size:24 final size:24
Alignment explanation
Indices: 9164531--9164579 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 24
9164521 TTTGAACGTG
9164531 TTATAAATAATATATTA-TAC-ATTA
1 TTAT-AATAATA-ATTATTACAATTA
9164555 TTATAATAATAATTATTACAATTA
1 TTATAATAATAATTATTACAATTA
9164579 T
1 T
9164580 CTTAGTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.17
23 10 0.43
24 9 0.39
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTATAATAATAATTATTACAATTA
Found at i:9165068 original size:17 final size:16
Alignment explanation
Indices: 9165048--9165130 Score: 51
Period size: 17 Copynumber: 4.7 Consensus size: 16
9165038 TTTAATAGAT
9165048 ATAATTATATATTAATA
1 ATAATTAT-TATTAATA
* *
9165065 ATAACTTGTTA-AAATA
1 ATAA-TTATTATTAATA
9165081 ATTAACATTATTAATTAATTA
1 A-T-A-ATTATT-ATTAA-TA
*
9165102 ATAATTAATATTAATA
1 ATAATTATTATTAATA
9165118 ATTAATTAATTAT
1 A-TAATT-ATTAT
9165131 GATAATATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 17
0.69 0.08 0.23
Matches are distributed among these distances:
16 8 0.16
17 17 0.33
18 17 0.33
19 3 0.06
20 3 0.06
21 3 0.06
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (16 bp):
ATAATTATTATTAATA
Found at i:9165095 original size:13 final size:12
Alignment explanation
Indices: 9165077--9165127 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
9165067 AACTTGTTAA
9165077 AATAATTAACATT
1 AATAATTAA-ATT
*
9165090 ATTAATT-AATT
1 AATAATTAAATT
9165101 AATAATTAATATT
1 AATAATTAA-ATT
9165114 AATAATT-AATT
1 AATAATTAAATT
9165125 AAT
1 AAT
9165128 TATGATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 15 0.44
12 3 0.09
13 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (12 bp):
AATAATTAAATT
Found at i:9165099 original size:4 final size:4
Alignment explanation
Indices: 9165090--9165129 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
9165080 AATTAACATT
9165090 ATTA ATTA ATTA A-TA ATTA A-T- ATTA A-TA ATTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA
9165130 TGATAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
2 1 0.03
3 8 0.25
4 23 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
ATTA
Found at i:9165105 original size:24 final size:24
Alignment explanation
Indices: 9165077--9165127 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
9165067 AACTTGTTAA
*
9165077 AATAATTAACATTATTAATTAATT
1 AATAATTAACATTAATAATTAATT
*
9165101 AATAATTAATATTAATAATTAATT
1 AATAATTAACATTAATAATTAATT
9165125 AAT
1 AAT
9165128 TATGATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AATAATTAACATTAATAATTAATT
Found at i:9165136 original size:17 final size:15
Alignment explanation
Indices: 9165090--9165129 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
9165080 AATTAACATT
9165090 ATTAATTAATTAATA
1 ATTAATTAATTAATA
9165105 ATTAA-T-ATTAATA
1 ATTAATTAATTAATA
9165118 ATTAATTAATTA
1 ATTAATTAATTA
9165130 TGATAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 12 0.52
14 2 0.09
15 9 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAATTAATTAATA
Found at i:9165187 original size:17 final size:17
Alignment explanation
Indices: 9165165--9165216 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
9165155 CCATAATAAT
9165165 TTAATAATATAAATTAA
1 TTAATAATATAAATTAA
*
9165182 TTAATATTATAAATTATAA
1 TTAATAATATAAA-T-TAA
* *
9165201 TAAACAATATAAATTA
1 TTAATAATATAAATTA
9165217 TTTATCATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 14 0.48
18 2 0.07
19 13 0.45
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAATAATATAAATTAA
Found at i:9166077 original size:21 final size:20
Alignment explanation
Indices: 9166016--9166129 Score: 74
Period size: 20 Copynumber: 5.7 Consensus size: 20
9166006 TATTATTAAC
* *
9166016 TATTTATT-TTAATAAGAAT
1 TATTTATTATAAATAATAAT
* * *
9166035 AATTTTATTATAACT-ATTAT
1 TA-TTTATTATAAATAATAAT
9166055 TATTT-TTGATATAATAATAAT
1 TATTTATT-ATA-AATAATAAT
*
9166076 TATTTATTATAAATAATTATAC
1 TATTTATTATAAATAA-TA-AT
* * *
9166098 AATTAATTATAAATAACAAT
1 TATTTATTATAAATAATAAT
9166118 TATTTA-TATAAA
1 TATTTATTATAAA
9166130 CTATTATTAA
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
18 2 0.03
19 13 0.18
20 22 0.31
21 18 0.25
22 17 0.24
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (20 bp):
TATTTATTATAAATAATAAT
Found at i:9166095 original size:38 final size:37
Alignment explanation
Indices: 9165991--9166095 Score: 94
Period size: 38 Copynumber: 2.9 Consensus size: 37
9165981 ATAATGACAT
* * *
9165991 TATAATAAT-ATTATATATTATTAACTATTTA-TTTTA
1 TATAATAATAATTATTTATTA-TAAATAATTATTTTTA
* *
9166027 -ATAAGAATAA-T-TTTATTATAACTATTATTATTTTTGA
1 TATAATAATAATTATTTATTATAA--ATAATTATTTTT-A
9166064 TATAATAATAATTATTTATTATAAATAATTAT
1 TATAATAATAATTATTTATTATAAATAATTAT
9166096 ACAATTAATT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
33 3 0.06
34 6 0.11
35 12 0.22
36 5 0.09
37 1 0.02
38 16 0.30
39 1 0.02
40 10 0.19
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (37 bp):
TATAATAATAATTATTTATTATAAATAATTATTTTTA
Found at i:9166725 original size:13 final size:14
Alignment explanation
Indices: 9166699--9166739 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
9166689 AATAATTGTT
9166699 ATATA-ATA-TATA
1 ATATACATATTATA
9166711 ATATACA-ATTATA
1 ATATACATATTATA
9166724 AT-TACATATTATA
1 ATATACATATTATA
9166737 ATA
1 ATA
9166740 ATTAATATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATACATATTATA
Found at i:9166770 original size:14 final size:15
Alignment explanation
Indices: 9166729--9166794 Score: 54
Period size: 14 Copynumber: 4.7 Consensus size: 15
9166719 TTATAATTAC
9166729 ATATTA-TAATAATTA
1 ATATTATTAATAA-TA
* *
9166744 ATATGATTCATAA-A
1 ATATTATTAATAATA
9166758 ATATTATTAATAAT-
1 ATATTATTAATAATA
9166772 AT-TTAATT-ATAATA
1 ATATT-ATTAATAATA
9166786 AT-TTATTAA
1 ATATTATTAA
9166795 ATTATTACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 10 0.24
14 22 0.52
15 5 0.12
16 5 0.12
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
ATATTATTAATAATA
Found at i:9166853 original size:18 final size:19
Alignment explanation
Indices: 9166830--9166865 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
9166820 AATTATTATA
9166830 ATAAATAGTAA-TAATATC
1 ATAAATAGTAACTAATATC
*
9166848 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
9166866 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.36
Consensus pattern (19 bp):
ATAAATAGTAACTAATATC
Found at i:9166910 original size:18 final size:18
Alignment explanation
Indices: 9166762--9166912 Score: 53
Period size: 18 Copynumber: 8.1 Consensus size: 18
9166752 CATAAAATAT
*
9166762 TATTAATAATATTTAATTA
1 TATTAAT-ATATTAAATTA
* *
9166781 TAATAATTTATTAAATTA
1 TATTAATATATTAAATTA
* *
9166799 TTACATGATACTATATAAATTA
1 -TA-TTAATA-TAT-TAAATTA
* *
9166821 -ATTATTATAATAAA-TA
1 TATTAATATATTAAATTA
* *
9166837 GTAATAATATCATAAATATTA
1 -TATTAATAT-ATTAA-ATTA
* * *
9166858 -ACTAATATATGACTATTA
1 TATTAATATATTA-AATTA
9166876 GT-TTAA-A-ATTGAAATTA
1 -TATTAATATATT-AAATTA
9166893 TATTAATATATTAAATTA
1 TATTAATATATTAAATTA
9166911 TA
1 TA
9166913 ATAGCCAAAT
Statistics
Matches: 97, Mismatches: 19, Indels: 33
0.65 0.13 0.22
Matches are distributed among these distances:
16 3 0.03
17 14 0.14
18 35 0.36
19 27 0.28
20 6 0.06
21 5 0.05
22 7 0.07
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
TATTAATATATTAAATTA
Found at i:9167621 original size:22 final size:21
Alignment explanation
Indices: 9167580--9167622 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
9167570 AATTTATTAG
**
9167580 TAATTTATTAATAAGTAAAAT
1 TAATTTATTAATAACAAAAAT
9167601 TAATATTATTAATAACAAAAAT
1 TAAT-TTATTAATAACAAAAAT
9167623 ATTTGTAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATTTATTAATAACAAAAAT
Found at i:9168151 original size:14 final size:14
Alignment explanation
Indices: 9168132--9168161 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9168122 GACTATTTCA
*
9168132 ATTAATAAATATTT
1 ATTAATAAATAATT
9168146 ATTAATAAATAATT
1 ATTAATAAATAATT
9168160 AT
1 AT
9168162 CTATTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTAATAAATAATT
Found at i:9168435 original size:18 final size:17
Alignment explanation
Indices: 9168409--9168461 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 17
9168399 TTTCATAATT
9168409 TATACATAAATTATAATAA
1 TATA-ATAAATTAT-ATAA
9168428 TATAATAAATTATATAA
1 TATAATAAATTATATAA
*
9168445 -ATAA-ATATTATTATAA
1 TATAATAAATTA-TATAA
9168461 T
1 T
9168462 TATTTAATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 5 0.16
16 9 0.29
17 4 0.13
18 9 0.29
19 4 0.13
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
TATAATAAATTATATAA
Found at i:9168488 original size:20 final size:22
Alignment explanation
Indices: 9168451--9168492 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
9168441 ATAAATAAAT
9168451 ATTATTATAATTATTTAATCTA
1 ATTATTATAATTATTTAATCTA
*
9168473 ATTATTA-ATTTA-TTAATCTA
1 ATTATTATAATTATTTAATCTA
9168493 TTCAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 4 0.21
22 7 0.37
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTATTATAATTATTTAATCTA
Found at i:9168580 original size:19 final size:20
Alignment explanation
Indices: 9168540--9168612 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 20
9168530 TACTTTATAA
9168540 AATAATATTTTATTAATTTATT
1 AATAATA-TTTATTAA-TTATT
9168562 AATAATATTTATTAA-TATT
1 AATAATATTTATTAATTATT
* ** *
9168581 AATTATATTTTATTTGTTACT
1 AATAATA-TTTATTAATTATT
9168602 AAT-ATATTTAT
1 AATAATATTTAT
9168613 ATTTTATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
19 15 0.33
20 9 0.20
21 14 0.31
22 7 0.16
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (20 bp):
AATAATATTTATTAATTATT
Found at i:9168853 original size:27 final size:26
Alignment explanation
Indices: 9168818--9168868 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
9168808 ATAATATTTG
9168818 ATTTATAGTATAATATAATATTATATA
1 ATTTATAGTATAATATAA-ATTATATA
*
9168845 ATTTATAGTTTAATATAAATTATA
1 ATTTATAGTATAATATAAATTATA
9168869 AGTAACAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
ATTTATAGTATAATATAAATTATATA
Found at i:9169001 original size:28 final size:25
Alignment explanation
Indices: 9168961--9169015 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
9168951 TTATAATTTA
9168961 TATTATAAATTATTAAATATAATATAAT
1 TATTATAAATTATT--A-ATAATATAAT
* *
9168989 TATTATGATTTATTAATAATATAAT
1 TATTATAAATTATTAATAATATAAT
9169014 TA
1 TA
9169016 AAATATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.48
26 1 0.04
28 12 0.48
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
TATTATAAATTATTAATAATATAAT
Found at i:9169007 original size:25 final size:25
Alignment explanation
Indices: 9168979--9169033 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
9168969 ATTATTAAAT
**
9168979 ATAATATAATTATTATGATTT-ATTA
1 ATAATATAATTAAAAT-ATTTAATTA
9169004 ATAATATAATTAAAATATTTAATTA
1 ATAATATAATTAAAATATTTAATTA
9169029 ATAAT
1 ATAAT
9169034 TGTTATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (25 bp):
ATAATATAATTAAAATATTTAATTA
Found at i:9169108 original size:18 final size:16
Alignment explanation
Indices: 9169087--9169128 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
9169077 ATTACTAGTT
9169087 ATACTTATATTATTAATA
1 ATACTTATATTA-TAA-A
*
9169105 ATACATATATTATAAA
1 ATACTTATATTATAAA
9169121 ATA-TTATA
1 ATACTTATA
9169129 ATAAACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 4 0.18
16 4 0.18
17 3 0.14
18 11 0.50
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (16 bp):
ATACTTATATTATAAA
Found at i:9169413 original size:13 final size:13
Alignment explanation
Indices: 9169397--9169426 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9169387 AATTATATAA
*
9169397 TATTATAATAGTT
1 TATTATAATAGCT
9169410 TATTATAATAGCT
1 TATTATAATAGCT
9169423 TATT
1 TATT
9169427 TCGAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (13 bp):
TATTATAATAGCT
Found at i:9169938 original size:19 final size:20
Alignment explanation
Indices: 9169907--9169944 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
9169897 ATTCAAATAT
9169907 TAAATTATAAATAA-TTGAG
1 TAAATTATAAATAACTTGAG
9169926 TAAA-TATATAATAACTTGA
1 TAAATTATA-AATAACTTGA
9169945 AGTAGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.37
Consensus pattern (20 bp):
TAAATTATAAATAACTTGAG
Found at i:9170000 original size:19 final size:20
Alignment explanation
Indices: 9169978--9170062 Score: 72
Period size: 19 Copynumber: 4.3 Consensus size: 20
9169968 ATAACATAAC
9169978 TTAATTATAATATAATTAT-
1 TTAATTATAATATAATTATA
*
9169997 TTAAATT-TTA-ATAATTATA
1 TT-AATTATAATATAATTATA
9170016 TTAA-TATTAATA-AATTATA
1 TTAATTA-TAATATAATTATA
* *
9170035 TTAATTAGTTAATATTATAATA
1 TTAATTA--TAATATAATTATA
9170057 TTAATT
1 TTAATT
9170063 TAAATTATAA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
17 1 0.02
18 10 0.19
19 19 0.35
20 7 0.13
21 6 0.11
22 11 0.20
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (20 bp):
TTAATTATAATATAATTATA
Found at i:9170012 original size:18 final size:19
Alignment explanation
Indices: 9169989--9170053 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
9169979 TAATTATAAT
*
9169989 ATAATTAT-TTAAATTTTA
1 ATAATTATATTAAATATTA
9170007 ATAATTATATT-AATATTA
1 ATAATTATATTAAATATTA
*
9170025 ATAAATTATATTAATTAGTTA
1 AT-AATTATATTAAATA-TTA
9170046 AT-ATTATA
1 ATAATTATA
9170054 ATATTAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 16 0.39
19 17 0.41
20 3 0.07
21 5 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
ATAATTATATTAAATATTA
Found at i:9170046 original size:27 final size:27
Alignment explanation
Indices: 9169979--9170059 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 27
9169969 TAACATAACT
*
9169979 TAATTATAATATAATTATT-TAAATTTTAA
1 TAATTAT-AT-TAA-TATTATAAATTATAA
*
9170008 TAATTATATTAATATTAATAAATTATAT
1 TAATTATATTAATATT-ATAAATTATAA
*
9170036 TAATTA-GTTAATATTATAATATTA
1 TAATTATATTAATATTATAA-ATTA
9170060 ATTTAAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
26 8 0.17
27 15 0.33
28 16 0.35
29 7 0.15
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (27 bp):
TAATTATATTAATATTATAAATTATAA
Found at i:9170049 original size:14 final size:14
Alignment explanation
Indices: 9170015--9170065 Score: 54
Period size: 13 Copynumber: 3.8 Consensus size: 14
9170005 TAATAATTAT
9170015 ATTAATATTAATAA
1 ATTAATATTAATAA
*
9170029 ATT-ATATTAATTA
1 ATTAATATTAATAA
*
9170042 GTTAATATT-ATAA
1 ATTAATATTAATAA
9170055 TATTAAT-TTAA
1 -ATTAATATTAA
9170066 ATTATAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 16 0.53
14 14 0.47
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTAATATTAATAA
Found at i:9170069 original size:18 final size:17
Alignment explanation
Indices: 9169980--9170074 Score: 65
Period size: 18 Copynumber: 5.6 Consensus size: 17
9169970 AACATAACTT
9169980 AATTATAATA-TAATT-
1 AATTATAATATTAATTA
* *
9169995 ATTTA-AATTTTAA-TA
1 AATTATAATATTAATTA
*
9170010 ATTATATTAATATTAA-TA
1 AAT-TA-TAATATTAATTA
* *
9170028 AATTATATTAATTAGTTA
1 AATTATAAT-ATTAATTA
9170046 ATATTATAATATTAATTTA
1 A-ATTATAATATTAA-TTA
9170065 AATTATAATA
1 AATTATAATA
9170075 ATTATATACT
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
14 4 0.06
15 10 0.16
16 5 0.08
17 6 0.10
18 27 0.43
19 11 0.17
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (17 bp):
AATTATAATATTAATTA
Found at i:9170078 original size:19 final size:19
Alignment explanation
Indices: 9170026--9170078 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
9170016 TTAATATTAA
*
9170026 TAAATTATATTAATT-AGT
1 TAAATTATAATAATTAAGT
*
9170044 TAATATTATAAT-ATTAATT
1 TAA-ATTATAATAATTAAGT
9170063 TAAATTATAATAATTA
1 TAAATTATAATAATTA
9170079 TATACTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
TAAATTATAATAATTAAGT
Found at i:9170439 original size:13 final size:13
Alignment explanation
Indices: 9170421--9170445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9170411 ATACTTTATT
9170421 AATAATTAGATTA
1 AATAATTAGATTA
9170434 AATAATTAGATT
1 AATAATTAGATT
9170446 TCTTTATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:9170571 original size:13 final size:13
Alignment explanation
Indices: 9170553--9170577 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9170543 TATATTAGTT
9170553 TTAATATTTAAAC
1 TTAATATTTAAAC
9170566 TTAATATTTAAA
1 TTAATATTTAAA
9170578 ATTTAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAATATTTAAAC
Found at i:9170621 original size:17 final size:17
Alignment explanation
Indices: 9170595--9170646 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
9170585 TATTTATATG
*
9170595 ATATTTTAATTAATTAT
1 ATATTATAATTAATTAT
*
9170612 ATATTATAATTAAATTAG
1 ATATTATAATT-AATTAT
9170630 AGTATTAT--TTAATTAT
1 A-TATTATAATTAATTAT
9170646 A
1 A
9170647 ATAATTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.20
17 12 0.40
18 6 0.20
19 6 0.20
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (17 bp):
ATATTATAATTAATTAT
Found at i:9170674 original size:16 final size:15
Alignment explanation
Indices: 9170648--9170677 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
9170638 TTAATTATAA
9170648 TAATTATTTTAATTT
1 TAATTATTTTAATTT
9170663 TAATTAATTTTAATT
1 TAATT-ATTTTAATT
9170678 GTATAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TAATTATTTTAATTT
Found at i:9172233 original size:26 final size:24
Alignment explanation
Indices: 9172185--9172235 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
9172175 TATTTAATTG
9172185 ATTATTAATTATTAATACTAATAT
1 ATTATTAATTATTAATACTAATAT
9172209 ATTATTATATCTATTAATA-TAA-AT
1 ATTATTA-AT-TATTAATACTAATAT
9172233 ATT
1 ATT
9172236 TTAGATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 12 0.48
25 5 0.20
26 8 0.32
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTATTAATTATTAATACTAATAT
Found at i:9172337 original size:22 final size:21
Alignment explanation
Indices: 9172312--9172355 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
9172302 ATAGTACTAC
9172312 TTTATAAATAATATTTTATTAA
1 TTTATAAATAATA-TTTATTAA
*
9172334 TTTATTAATAATATTTATTAA
1 TTTATAAATAATATTTATTAA
9172355 T
1 T
9172356 ATTAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTATAAATAATATTTATTAA
Found at i:9172358 original size:19 final size:20
Alignment explanation
Indices: 9172313--9172368 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
9172303 TAGTACTACT
*
9172313 TTATAAATAATATTTTATTAA
1 TTATTAATAATA-TTTATTAA
9172334 TTTATTAATAATATTTATTAA
1 -TTATTAATAATATTTATTAA
*
9172355 -TATTAATTATATTT
1 TTATTAATAATATTT
9172369 TTATTTGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 13 0.41
21 8 0.25
22 11 0.34
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATTAATAATATTTATTAA
Found at i:9173417 original size:180 final size:179
Alignment explanation
Indices: 9172948--9173456 Score: 484
Period size: 181 Copynumber: 2.8 Consensus size: 179
9172938 AACTAATAGT
* *
9172948 AATAAAATAATACTATTTTATT-ACTATTTTAAAAATTAATAAG--AG-AATTAAAAACTAAATC
1 AATAAAATAATACTAATTTATTAAC-ATTCTAAAAATTAATAAGTAAGAAATTAAAAA-TAAATC
* * * *
9173009 TCTTTA-TCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCCAATTGTTATG
64 TATTTACT-GAA-CAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATG
* * * * * *
9173073 --ATTTTTGTTTTGTCCTAAAACATTTAATTTATATTCAACAAGCTTATTCAG
127 ACATTTTTGTTTAGTCATAAAATAATTAATTCATAATCAACAAGCTTATTCAG
* * * * * * * * * *
9173124 ACTAAAATATTGCTAAATTAATAATATTCTAAACATTAACAAGTAAGAATTTAAAAAATAAATGT
1 AATAAAATAATACTAATTTATTAACATTCTAAAAATTAATAAGTAAGAAATT-AAAAATAAATCT
* * * * * * *
9173189 GTTTACTGAATCAGTTTAAATAGTTAAGACTATTAGAATAATTATCTATTTCAAATCATTTTGAC
65 ATTTACTGAA-CAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGAC
* * *
9173254 ATTTTTGTTTAGTCATAAAATAATTACTTCA-AATCATACATGTTTATTC-G
129 ATTTTTGTTTAGTCATAAAATAATTAATTCATAATCA-ACAAGCTTATTCAG
* *
9173304 AAATAAAATAATACTAATTTATTAACATTCAAAAAATTATTAAGTAAGAAATTAGAAAA-AAATC
1 -AATAAAATAATACTAATTTATTAACATTCTAAAAATTAATAAGTAAGAAATTA-AAAATAAATC
* * *
9173368 TATTTACTGAACAAGTTCAAATATTTTTGACTATTTGAACAATTATCTATTTAAAATCGTTATGA
64 TATTTACTGAAC-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGA
* *
9173433 CCTTATAT-TTTA-TCATAAAATAAT
128 CATT-TTTGTTTAGTCATAAAATAAT
9173457 ATTACTTTAT
Statistics
Matches: 264, Mismatches: 56, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
176 31 0.12
177 1 0.00
178 2 0.01
179 72 0.27
180 76 0.29
181 82 0.31
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (179 bp):
AATAAAATAATACTAATTTATTAACATTCTAAAAATTAATAAGTAAGAAATTAAAAATAAATCTA
TTTACTGAACAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACAT
TTTTGTTTAGTCATAAAATAATTAATTCATAATCAACAAGCTTATTCAG
Found at i:9173585 original size:17 final size:17
Alignment explanation
Indices: 9173559--9173597 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
9173549 TCTATAGTGG
9173559 TTAT-ATTATATATTTA
1 TTATAATTATATATTTA
9173575 TTATAATTATATATTTA
1 TTATAATTATATATTTA
*
9173592 TAATAA
1 TTATAA
9173598 AATAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTATAATTATATATTTA
Found at i:9173768 original size:26 final size:26
Alignment explanation
Indices: 9173739--9173805 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
9173729 AATACTTATA
9173739 ATTTATTATTAATTATCTGAA-TATTG
1 ATTT-TTATTAATTATCTGAATTATTG
* * * *
9173765 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATCTGAATTATTG
9173792 ATTTTTATTAATTA
1 ATTTTTATTAATTA
9173806 ATAGATATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.06
26 20 0.61
27 11 0.33
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (26 bp):
ATTTTTATTAATTATCTGAATTATTG
Found at i:9173770 original size:27 final size:29
Alignment explanation
Indices: 9173740--9173807 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 29
9173730 ATACTTATAA
9173740 TTTATTATTAATTATCTGAA-TATTGA-T
1 TTTATTATTAATTATCTGAATTATTGATT
* * * *
9173767 TTTAAT-TTAAATATTTTAATTATTGATT
1 TTTATTATTAATTATCTGAATTATTGATT
9173795 TTTATTAATTAAT
1 TTTATT-ATTAAT
9173808 AGATATCTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.32
27 11 0.35
28 6 0.19
30 4 0.13
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (29 bp):
TTTATTATTAATTATCTGAATTATTGATT
Found at i:9174247 original size:181 final size:180
Alignment explanation
Indices: 9173840--9174955 Score: 812
Period size: 181 Copynumber: 6.2 Consensus size: 180
9173830 TTTAGATCTA
* * ** * * * * * *
9173840 TTATTAATTTTTAAAATATTAATAGAGCAATATTAATTTATTCCGAACAAACTTATATGGAC--A
1 TTATTAA-TTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAACTGA
* * * * *
9173903 AAAACATTTGTTTTATGACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTGTTCAAATAA
65 AAAA-A-TTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAA
* * *
9173968 TCAT-ATTATTTGAACTGGTT-AGGTAAGCAGAA-TTATTTGTTAAATCTCTTA-
128 TCATAATTATTTAAACTGGTTCA-GTAAACA-AATTTATTTTTTAAATCTCTTAC
* * * * * * *
9174019 TTAATT-A-TTGA-AATAGTAATAAATTCATTTTATTTTATTTTGAATAAGCTAGTATGAATTGA
1 TT-ATTAATTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAACTGA
* * * * *
9174081 AAAAATTGTTTTATGACAAAACAAAATGTTATAATGATTTAAAATAGATAATTTTTCATAGAATC
65 AAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAATC
* * *
9174146 TTAATTATTTAAACTGGTTCAGCAAACAAATTTATTTTTTAAATCTCTTAA
130 ATAATTATTTAAACTGGTTCAGTAAACAAATTTATTTTTTAAATCTCTTAC
* * * *
9174197 TTATTAATGTTTAGAGTATTATTAGATTAATATTATTTTATTTCGAATAAGCTTTTATGAACATG
1 TTATTAAT-TTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAAC-TG
* * * * * * *
9174262 -AATAATTGTTTTATGATAGAACAAAAAATGTTTATTTTTTAAATAACTAATTTAAACTATACAT
64 AAAAAATTGTTTTATGACA-AA-ACAAAA-G--------GT-CATAA-TGATTTAAA--ATAGAT
* * * *
9174326 -TTTGTTCAAATAGTCA-AATTATTTAAAC-GGATTC-GATAAATAAATTTATTTTTTAAATTTC
114 AATTGTTCAAATAATCATAATTATTTAAACTGG-TTCAG-TAAACAAATTTATTTTTTAAATCTC
9174387 TTAC
177 TTAC
* * * *
9174391 TTATTAACTTTT-GAAAGATTAATAAATTAGTATTATTTTA-TTC-TA-AAGCTTGTGTG-A-TA
1 TTATTAA-TTTTAG-AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAACT-
* * * * * * * *
9174450 AAAAAAATTGTTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGATAATTGTTGAAATAG
63 GAAAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAA
* * * **
9174515 CCATAATTGTTTGAACTAATTCAGTAAACATAA-TTATTTTTTAAA--TC--AC
128 TCATAATTATTTAAACTGGTTCAGTAAACA-AATTTATTTTTTAAATCTCTTAC
* * *
9174564 TTATTAATTTTTGGAATATTAATAAATTACTATTATTTTATTTCGAATAAGCTTATATGAACTGA
1 TTATTAA-TTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAACTGA
* * * * *
9174629 AACAATTATTTTATGAC-AAACTAGAAGGTCATAATGATTTTAAATAGATAATTGTTCAAATAGT
65 AAAAATTGTTTTATGACAAAAC-AAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAAT
* * * * *
9174693 CATAACTATTTAAATTTGTTCAGTAAACAAATTAATTTTTTTAAA-CTCTTGC
129 CATAATTATTTAAACTGGTTCAGTAAACAAATTTA-TTTTTTAAATCTCTTAC
* * * * * *
9174745 TTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTTTTATGAACTGA
1 TTATTAATTTTAG-AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAACTGA
* * * * * * *
9174810 AACAATTGTTTTTTGTCAAAACAAAAGGTCATTATGATTTTAAATAAATAATTATTCAAATAATC
65 AAAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAATC
* * * * * * * *
9174875 ATAATTGTTTAAACTTGATCGGTAAACAGATTTATTTTTTTATATCTTTTGC
130 ATAATTATTTAAACTGGTTCAGTAAACAAATTTA-TTTTTTAAATCTCTTAC
* *
9174927 TTATTAATTTTTTGAATGTTAAT-AATTAA
1 TTATTAA-TTTTAGAATATTAATAAATTAA
9174956 AAATTTTAAA
Statistics
Matches: 747, Mismatches: 136, Indels: 106
0.76 0.14 0.11
Matches are distributed among these distances:
173 37 0.05
174 4 0.01
175 8 0.01
176 115 0.15
177 159 0.21
178 26 0.03
179 6 0.01
180 11 0.01
181 201 0.27
182 28 0.04
183 11 0.01
187 1 0.00
188 6 0.01
189 2 0.00
190 15 0.02
191 9 0.01
192 2 0.00
193 11 0.01
194 79 0.11
195 11 0.01
196 5 0.01
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (180 bp):
TTATTAATTTTAGAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAACTGAA
AAAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATAATCA
TAATTATTTAAACTGGTTCAGTAAACAAATTTATTTTTTAAATCTCTTAC
Found at i:9174514 original size:16 final size:17
Alignment explanation
Indices: 9174493--9174525 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9174483 TATTGATTTC
9174493 AAATAG-ATAATTGTTG
1 AAATAGCATAATTGTTG
9174509 AAATAGCCATAATTGTT
1 AAATAG-CATAATTGTT
9174526 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTGTTG
Found at i:9174995 original size:13 final size:14
Alignment explanation
Indices: 9174950--9174993 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
9174940 GAATGTTAAT
9174950 AATTAAAA-ATTTTA
1 AATTAAAATA-TTTA
*
9174964 AATTTTAAATATTTA
1 AA-TTAAAATATTTA
9174979 AATTAAAATATTTA
1 AATTAAAATATTTA
9174993 A
1 A
9174994 TTTTTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 14 0.54
15 11 0.42
16 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:9174995 original size:28 final size:29
Alignment explanation
Indices: 9174950--9175007 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
9174940 GAATGTTAAT
9174950 AATTAAAAATTTTAAATTTTAAATATTTA
1 AATTAAAAATTTTAAATTTTAAATATTTA
* *
9174979 AATT-AAAATATTT-AATTTTTATTATTTA
1 AATTAAAAAT-TTTAAATTTTAAATATTTA
9175007 A
1 A
9175008 TTATCGATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (29 bp):
AATTAAAAATTTTAAATTTTAAATATTTA
Found at i:9175207 original size:19 final size:18
Alignment explanation
Indices: 9175147--9175207 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 18
9175137 ATTAAAATAG
9175147 ATAATTATTATTATT-AAT
1 ATAATTA-TATTATTAAAT
*
9175165 ATAATTA-ATTATTAACT
1 ATAATTATATTATTAAAT
9175182 AT--TTATATTATTAAAT
1 ATAATTATATTATTAAAT
9175198 ATAATGTATA
1 ATAAT-TATA
9175208 AGATATTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
15 3 0.08
16 17 0.47
17 4 0.11
18 8 0.22
19 4 0.11
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
ATAATTATATTATTAAAT
Found at i:9175238 original size:16 final size:17
Alignment explanation
Indices: 9175219--9175252 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9175209 GATATTATTC
9175219 AAATAATATTA-TTATA
1 AAATAATATTACTTATA
*
9175235 AAATAGTATTACTTATA
1 AAATAATATTACTTATA
9175252 A
1 A
9175253 TTAATAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
AAATAATATTACTTATA
Found at i:9175353 original size:34 final size:34
Alignment explanation
Indices: 9175315--9175402 Score: 90
Period size: 38 Copynumber: 2.5 Consensus size: 34
9175305 ATTTGAATAT
9175315 ATAATATATTTTTTAT-ATTATATATAATAAATTA
1 ATAATATATTTTTTATAATT-TATATAATAAATTA
*
9175349 ATAATATTTATTTTTTCATAAATTTATTTAATAAATTA
1 ATAATA--TATTTTTT-AT-AATTTATATAATAAATTA
*
9175387 TTAATA-ATTCTTTTAT
1 ATAATATATT-TTTTAT
9175403 TTAGTCATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
34 6 0.13
35 5 0.11
36 12 0.26
37 2 0.04
38 18 0.39
39 3 0.07
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (34 bp):
ATAATATATTTTTTATAATTTATATAATAAATTA
Found at i:9175355 original size:23 final size:23
Alignment explanation
Indices: 9175311--9175356 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
9175301 TATTATTTGA
* ** *
9175311 ATATATAATATATTTTTTATATT
1 ATATATAATAAATTAATAATATT
9175334 ATATATAATAAATTAATAATATT
1 ATATATAATAAATTAATAATATT
9175357 TATTTTTTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATATATAATAAATTAATAATATT
Found at i:9175429 original size:16 final size:17
Alignment explanation
Indices: 9175408--9175440 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9175398 TTTATTTAGT
9175408 CATTTA-ATAATAAATA
1 CATTTATATAATAAATA
*
9175424 CATTTATATAATGAATA
1 CATTTATATAATAAATA
9175441 TATCTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (17 bp):
CATTTATATAATAAATA
Found at i:9175628 original size:7 final size:7
Alignment explanation
Indices: 9175616--9175688 Score: 67
Period size: 7 Copynumber: 10.0 Consensus size: 7
9175606 TTTTATTTTA
9175616 TTTTATT
1 TTTTATT
9175623 TTTTATT
1 TTTTATT
*
9175630 TTGTATT
1 TTTTATT
*
9175637 TTGTA-T
1 TTTTATT
9175643 TTTTATTT
1 TTTTA-TT
9175651 TTTGTATCT
1 TTT-TAT-T
9175660 TTTTATT
1 TTTTATT
*
9175667 TATTATT
1 TTTTATT
9175674 TATTTATT
1 T-TTTATT
*
9175682 TATTATT
1 TTTTATT
9175689 ACTCTATATA
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
6 5 0.09
7 31 0.55
8 14 0.25
9 6 0.11
ACGTcount: A:0.18, C:0.01, G:0.04, T:0.77
Consensus pattern (7 bp):
TTTTATT
Found at i:9175646 original size:22 final size:23
Alignment explanation
Indices: 9175619--9175674 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
9175609 TATTTTATTT
*
9175619 TATTTTT-TATTTTGTAT-TTTG
1 TATTTTTATTTTTTGTATCTTTG
*
9175640 TATTTTTATTTTTTGTATCTTTT
1 TATTTTTATTTTTTGTATCTTTG
9175663 TATTTATTATTT
1 TATTT-TTATTT
9175675 ATTTATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 7 0.23
22 9 0.30
23 8 0.27
24 6 0.20
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (23 bp):
TATTTTTATTTTTTGTATCTTTG
Found at i:9175674 original size:37 final size:38
Alignment explanation
Indices: 9175606--9175688 Score: 100
Period size: 37 Copynumber: 2.2 Consensus size: 38
9175596 GGTAAGCCCA
*
9175606 TTTTATTTTATTTTATTTTTTATTTTGTATTT-TGTAT
1 TTTTATTTTATTGTATTTTTTATTTTGTATTTATGTAT
*
9175643 TTTTATTTT-TTGTATCTTTTTATTTAT-TATTTATTTAT
1 TTTTATTTTATTGTAT-TTTTTATTT-TGTATTTATGTAT
9175681 TTATTATT
1 TT-TTATT
9175689 ACTCTATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
36 5 0.12
37 23 0.57
38 7 0.17
39 5 0.12
ACGTcount: A:0.18, C:0.01, G:0.04, T:0.77
Consensus pattern (38 bp):
TTTTATTTTATTGTATTTTTTATTTTGTATTTATGTAT
Found at i:9175687 original size:3 final size:3
Alignment explanation
Indices: 9175666--9175780 Score: 54
Period size: 3 Copynumber: 34.7 Consensus size: 3
9175656 ATCTTTTTAT
*
9175666 TTA TTA TTTA TTTA TTTA TTA TTA CTCTA TATA TTT TTA TTA TTA TTA
1 TTA TTA -TTA -TTA -TTA TTA TTA -T-TA T-TA TTA TTA TTA TTA TTA
* * *
9175714 TTTA TCTG TTA ATA -TA TATA CT- TTA TTA TTA TTTA TCTA TTA TTA
1 -TTA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA T-TA TTA TTA
*
9175759 TTA TTA TTTA TCTA TTA ATA TT
1 TTA TTA -TTA T-TA TTA TTA TT
9175781 TTTTATTTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
2 3 0.03
3 50 0.56
4 35 0.39
5 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:9175701 original size:34 final size:31
Alignment explanation
Indices: 9175663--9175775 Score: 104
Period size: 35 Copynumber: 3.4 Consensus size: 31
9175653 TGTATCTTTT
9175663 TATTTATTATTTATTTATTTATTATTACTCTATA
1 TATTTATTA-TTATTTATTTATTATTA-T-TATA
*
9175697 TATTT-TTATTATTATTATTTATCTGTTAATATATA
1 TATTTATTATTA-T-TTATTTAT-TATT-AT-TATA
*
9175732 TACTTTATTATTATTTATCTATTATTATTAT-
1 TA-TTTATTATTATTTATTTATTATTATTATA
9175763 TATTTATCTATTA
1 TATTTAT-TATTA
9175776 ATATTTTTTA
Statistics
Matches: 68, Mismatches: 4, Indels: 17
0.76 0.04 0.19
Matches are distributed among these distances:
30 5 0.07
31 7 0.10
32 6 0.09
33 6 0.09
34 16 0.24
35 17 0.25
36 5 0.07
37 6 0.09
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (31 bp):
TATTTATTATTATTTATTTATTATTATTATA
Found at i:9175729 original size:31 final size:31
Alignment explanation
Indices: 9175694--9175824 Score: 101
Period size: 31 Copynumber: 4.2 Consensus size: 31
9175684 TTATTACTCT
*
9175694 ATATATTTTTATTATTATTATTTATCTGTTA
1 ATATATTTTTATTATTATTATTTATCTATTA
**
9175725 ATATATATACT-TTATTATTATTTATCTATTA
1 ATATAT-TTTTATTATTATTATTTATCTATTA
* * * *
9175756 TTATTATTATTTATCTATTAATATTT-TTTATTT
1 ATA-TATT-TTTAT-TATTATTATTTATCTATTA
* *
9175789 ATCTAATTTTT-TT-TT-TTAGTTATCTATTA
1 ATAT-ATTTTTATTATTATTATTTATCTATTA
9175818 ATATATT
1 ATATATT
9175825 ATCTTTATTT
Statistics
Matches: 77, Mismatches: 16, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
28 7 0.09
29 10 0.13
30 1 0.01
31 29 0.38
32 10 0.13
33 10 0.13
34 10 0.13
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (31 bp):
ATATATTTTTATTATTATTATTTATCTATTA
Found at i:9175769 original size:27 final size:28
Alignment explanation
Indices: 9175666--9175774 Score: 84
Period size: 27 Copynumber: 3.8 Consensus size: 28
9175656 ATCTTTTTAT
*
9175666 TTATTATTTATTTATTTATTA-TTACTCTA
1 TTATTA-TTACTTATTTATTATTTA-TCTA
* *
9175695 TATATTTTTA-TTA-TTATTATTTATCTG
1 T-TATTATTACTTATTTATTATTTATCTA
9175722 TTAATATATATACTT-TATTATTATTTATCTA
1 TT-AT-TAT-TACTTAT-TTATTATTTATCTA
9175753 TTATTATTA-TTATTTATCTATT
1 TTATTATTACTTATTTAT-TATT
9175775 AATATTTTTT
Statistics
Matches: 66, Mismatches: 4, Indels: 21
0.73 0.04 0.23
Matches are distributed among these distances:
26 1 0.02
27 18 0.27
28 15 0.23
29 9 0.14
30 8 0.12
31 15 0.23
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (28 bp):
TTATTATTACTTATTTATTATTTATCTA
Found at i:9175785 original size:17 final size:17
Alignment explanation
Indices: 9175662--9175786 Score: 77
Period size: 15 Copynumber: 7.5 Consensus size: 17
9175652 TTGTATCTTT
*
9175662 TTATTTAT-TATTTAT-
1 TTATTTATCTATTAATA
*
9175677 TTATTTAT-TATTACTCTA
1 TTATTTATCTATTA--ATA
*
9175695 TATATTT-T-TATTATTA
1 T-TATTTATCTATTAATA
*
9175711 TTATTTATCTGTTAATA
1 TTATTTATCTATTAATA
* *
9175728 -TATATA-CT-TTATTA
1 TTATTTATCTATTAATA
9175742 TTATTTATCTATTATTATTA
1 TTATTTATCTATTA--A-TA
9175762 TTATTTATCTATTAATA
1 TTATTTATCTATTAATA
*
9175779 TTTTTTAT
1 TTATTTAT
9175787 TTATCTAATT
Statistics
Matches: 88, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
14 5 0.06
15 24 0.27
16 11 0.12
17 19 0.22
18 8 0.09
19 5 0.06
20 16 0.18
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.65
Consensus pattern (17 bp):
TTATTTATCTATTAATA
Found at i:9175786 original size:27 final size:25
Alignment explanation
Indices: 9175661--9175787 Score: 70
Period size: 31 Copynumber: 4.8 Consensus size: 25
9175651 TTTGTATCTT
*
9175661 TTTATTTAT-TATTTATTTATTTATTA
1 TTTATCTATATATTT-TTTA-TTATTA
9175687 -TTACTCTATATATTTTTATTATTATTA
1 TTTA-TCTATATA-TTTT-TTATTATTA
*
9175714 TTTATCTGTTAATATATATACTTTATTATTA
1 TTTATC---T-ATATAT-T-TTTTATTATTA
9175745 TTTATCTAT-TA----TTATTATTA
1 TTTATCTATATATTTTTTATTATTA
9175765 TTTATCTATTAATATTTTTTATT
1 TTTATCTA-T-ATATTTTTTATT
9175788 TATCTAATTT
Statistics
Matches: 81, Mismatches: 2, Indels: 35
0.69 0.02 0.30
Matches are distributed among these distances:
20 17 0.21
21 1 0.01
23 2 0.02
25 3 0.04
26 6 0.07
27 18 0.22
28 10 0.12
30 2 0.02
31 21 0.26
32 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (25 bp):
TTTATCTATATATTTTTTATTATTA
Found at i:9175788 original size:21 final size:21
Alignment explanation
Indices: 9175742--9175821 Score: 92
Period size: 21 Copynumber: 3.9 Consensus size: 21
9175732 TACTTTATTA
* *
9175742 TTATTTATCTATTATTA-TTA
1 TTATTTATCTATTAATATTTT
9175762 TTATTTATCTATTAATATTTT
1 TTATTTATCTATTAATATTTT
* *
9175783 TTATTTATCTAATT-TTTTTTT
1 TTATTTATCT-ATTAATATTTT
*
9175804 TTAGTTATCTATTAATAT
1 TTATTTATCTATTAATAT
9175822 ATTATCTTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
20 19 0.38
21 28 0.56
22 3 0.06
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (21 bp):
TTATTTATCTATTAATATTTT
Found at i:9175799 original size:17 final size:17
Alignment explanation
Indices: 9175735--9175806 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
9175725 ATATATATAC
* *
9175735 TTTATTATTATTTATCTA
1 TTTATTAATATTT-TTTA
* *
9175753 -TTATTATTATTATTTA
1 TTTATTAATATTTTTTA
*
9175769 TCTATTAATATTTTTTA
1 TTTATTAATATTTTTTA
*
9175786 TTTATCTAAT-TTTTTTT
1 TTTAT-TAATATTTTTTA
9175803 TTTA
1 TTTA
9175807 GTTATCTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
16 3 0.07
17 38 0.84
18 4 0.09
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATTAATATTTTTTA
Found at i:9175818 original size:42 final size:41
Alignment explanation
Indices: 9175742--9175821 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 41
9175732 TACTTTATTA
*
9175742 TTATTTATCTATTATTATTATTATTTATCTATTAATATTTT
1 TTATTTATCTATTATTATTATTAGTTATCTATTAATATTTT
* * *
9175783 TTATTTATCTAATTTTTTTTTTTAGTTATCTATTAATAT
1 TTATTTATCT-ATTATTATTATTAGTTATCTATTAATAT
9175822 ATTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
41 10 0.29
42 24 0.71
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (41 bp):
TTATTTATCTATTATTATTATTAGTTATCTATTAATATTTT
Found at i:9175832 original size:42 final size:42
Alignment explanation
Indices: 9175766--9175847 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
9175756 TTATTATTAT
* * *
9175766 TTATCTATTAATATTTTTTATTTATCTAATTTTTTTTTTTAG
1 TTATCTATTAATATATTATATTTATCTAATTTTTTCTTTTAG
* * *
9175808 TTATCTATTAATATATTATCTTTATTTTATTTTTTCTTTT
1 TTATCTATTAATATATTATATTTATCTAATTTTTTCTTTT
9175848 CTTTTTTCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.23, C:0.06, G:0.01, T:0.70
Consensus pattern (42 bp):
TTATCTATTAATATATTATATTTATCTAATTTTTTCTTTTAG
Found at i:9176682 original size:5 final size:5
Alignment explanation
Indices: 9176672--9176743 Score: 83
Period size: 6 Copynumber: 13.4 Consensus size: 5
9176662 TTAGTACTTC
9176672 TTATT TTATT TTA-T TTATTT TTATTT TTATCT TTATCT TTATTT TTATTT
1 TTATT TTATT TTATT TTA-TT TTA-TT TTAT-T TTAT-T TTA-TT TTA-TT
9176722 TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TT
9176744 CTTTAAATAA
Statistics
Matches: 63, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 30 0.48
7 1 0.02
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:9176706 original size:12 final size:11
Alignment explanation
Indices: 9176675--9176743 Score: 88
Period size: 10 Copynumber: 6.3 Consensus size: 11
9176665 GTACTTCTTA
9176675 TTTTATTTTAT
1 TTTTATTTTAT
*
9176686 TTAT-TTTTAT
1 TTTTATTTTAT
9176696 TTTTATCTTTAT
1 TTTTAT-TTTAT
*
9176708 CTTTATTTTTAT
1 TTTTA-TTTTAT
9176720 TTTTATTTTA-
1 TTTTATTTTAT
9176730 TTTTATTTTAT
1 TTTTATTTTAT
9176741 TTT
1 TTT
9176744 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
10 19 0.38
11 12 0.24
12 18 0.36
13 1 0.02
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:9176944 original size:60 final size:60
Alignment explanation
Indices: 9176760--9177044 Score: 357
Period size: 59 Copynumber: 4.8 Consensus size: 60
9176750 ATAAAATTCC
* * * *
9176760 AAAAAAAAT-TTTTTAAGGAAAAGTTGAAAGTAACAATTTTCCTTGAAAATAAGTCTTC-
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* *
9176818 -AAAAAAATAATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCT
1 AAAAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTCT
*
9176879 --AAAAAATATTTTTGAGGAAAAGTTGACAGTATCAATTTTTCTTGAAAATAAGTTTTCT
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* *
9176937 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTTGAAAATAATTTTTTTTT
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAA--GTTTTCT
** * * *
9176999 AAAAAAGGTTTTTTTGGGGAAAAGCTGAAAGTATCAATTTTTCTTG
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
9177045 TACGAAAGCA
Statistics
Matches: 204, Mismatches: 13, Indels: 16
0.88 0.06 0.07
Matches are distributed among these distances:
57 8 0.04
58 6 0.03
59 90 0.44
60 55 0.27
62 40 0.20
63 5 0.02
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.38
Consensus pattern (60 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
Found at i:9176971 original size:119 final size:118
Alignment explanation
Indices: 9176762--9177044 Score: 399
Period size: 119 Copynumber: 2.4 Consensus size: 118
9176752 AAAATTCCAA
* * *
9176762 AAAAAATTTTTTAAGGAAAAGTTGAAAGTAACAATTTTCCTTGAAAATAAGTCTTCAAAAAAATA
1 AAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTCTTCAAAAAAATA
9176827 ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAA-GTTTTTCT
66 ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATGTTTTTCT
* *
9176879 AAAAAATATTTTTGAGGAAAAGTTGACAGTATCAATTTTTCTTGAAAATAAGTTTTCTAAAAAAA
1 AAAAAAT-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTCTTC-AAAAAAA
* * * *
9176944 -ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAATTTTTTTTT
64 TA-ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATGTTTTTCT
* *
9176999 AAAAAAGGTTTTTTTGGGGAAAAGCTGAAAGTATCAATTTTTCTTG
1 AAAAAA---TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
9177045 TACGAAAGCA
Statistics
Matches: 147, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
117 7 0.05
118 45 0.31
119 49 0.33
120 12 0.08
122 33 0.22
123 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.39
Consensus pattern (118 bp):
AAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTCTTCAAAAAAATA
ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATGTTTTTCT
Found at i:9178076 original size:15 final size:16
Alignment explanation
Indices: 9178046--9178081 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
9178036 TGACGTTTTA
*
9178046 ATTTACTTAGTTAGTT
1 ATTTACTTACTTAGTT
9178062 ATTTA-TTACTTAGTT
1 ATTTACTTACTTAGTT
9178077 ATTTA
1 ATTTA
9178082 ACCTTTTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.28, C:0.06, G:0.08, T:0.58
Consensus pattern (16 bp):
ATTTACTTACTTAGTT
Found at i:9187471 original size:9 final size:9
Alignment explanation
Indices: 9187469--9187493 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9187459 AAAAATGAAA
9187469 AAAAAAATG
1 AAAAAAATG
9187478 AAAAAAATG
1 AAAAAAATG
9187487 AAAAAAA
1 AAAAAAA
9187494 AAGTGAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (9 bp):
AAAAAAATG
Found at i:9187473 original size:12 final size:12
Alignment explanation
Indices: 9187456--9187507 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
9187446 ACTATGCTTG
9187456 AAAAAAAATGAA
1 AAAAAAAATGAA
9187468 AAAAAAAATG--
1 AAAAAAAATGAA
9187478 -AAAAAAATGAA
1 AAAAAAAATGAA
*
9187489 AAAAAAAGTGAA
1 AAAAAAAATGAA
*
9187501 TAAAAAA
1 AAAAAAA
9187508 GGAGGACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 9 0.26
12 26 0.74
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (12 bp):
AAAAAAAATGAA
Found at i:9187483 original size:21 final size:21
Alignment explanation
Indices: 9187457--9187506 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
9187447 CTATGCTTGA
9187457 AAAAAAATGAAAAAAAAAATG
1 AAAAAAATGAAAAAAAAAATG
*
9187478 AAAAAAATGAAAAAAAAAGTG
1 AAAAAAATGAAAAAAAAAATG
9187499 AATAAAAA
1 AA-AAAAA
9187507 AGGAGGACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (21 bp):
AAAAAAATGAAAAAAAAAATG
Found at i:9188487 original size:22 final size:22
Alignment explanation
Indices: 9188462--9188503 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9188452 TCTTGAAATC
*
9188462 CCTTCAAACATGATTTTCAACT
1 CCTTCAAACATGATTGTCAACT
* *
9188484 CCTTTAGACATGATTGTCAA
1 CCTTCAAACATGATTGTCAA
9188504 GGAGTAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.36
Consensus pattern (22 bp):
CCTTCAAACATGATTGTCAACT
Found at i:9188579 original size:42 final size:42
Alignment explanation
Indices: 9188532--9188934 Score: 336
Period size: 42 Copynumber: 9.4 Consensus size: 42
9188522 AAGTTGTGAT
* * **
9188532 GCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCTATTTACTTTTTAAAAGTCATTGA
* * * *
9188574 GCCTCTGATTAGAGGAGCCT-TTTATTTTTTAAAAGTCGTTAA
1 GCCTCTGTTTAGAGGAG-CTATTTACTTTTTAAAAGTCATTGA
*
9188616 GCCTCTGTTTAGAGGAGCTTTCTTTACTTTTTAAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGC--TATTTACTTTTTAAAAGTCATTGA
* * ** *
9188660 GCCTCTGTTTAGAGAAGCAATTTACTTTCCAAAAGTCGTTGA
1 GCCTCTGTTTAGAGGAGCTATTTACTTTTTAAAAGTCATTGA
* * * *
9188702 GCCTCTGATTAGAGGAGC-CTTTA-TTTTTAAAAGTCGTTAA
1 GCCTCTGTTTAGAGGAGCTATTTACTTTTTAAAAGTCATTGA
*
9188742 GCCTCTGTTTAGAGGAGCTTTGTTTATCTTTTTAAAAGT-AGTTGA
1 GCCTCTGTTTAGAGGAGC--TATTTA-CTTTTTAAAAGTCA-TTGA
9188787 GCCTCTGTTTAGAGGAGCTTTATTTA-TTTTTCCAAAA-TCATTGA
1 GCCTCTGTTTAGAGGAGC--TATTTACTTTTT--AAAAGTCATTGA
* * * * **
9188831 GCCTCTGTTTAGAAGAGCTTTGTTTATTTTTTTGAAA-TTGTTGA
1 GCCTCTGTTTAGAGGAGC--TATTTA-CTTTTTAAAAGTCATTGA
* * * **
9188875 GCCTCTATTTAGATGAGCAATTTA-TCTTTCCAAAGTCATTGA
1 GCCTCTGTTTAGAGGAGCTATTTACT-TTTTAAAAGTCATTGA
*
9188917 GCCTCTGCTTAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
9188935 CTTCGTTTAT
Statistics
Matches: 301, Mismatches: 43, Indels: 34
0.80 0.11 0.09
Matches are distributed among these distances:
40 32 0.11
41 11 0.04
42 109 0.36
43 11 0.04
44 89 0.30
45 44 0.15
46 5 0.02
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (42 bp):
GCCTCTGTTTAGAGGAGCTATTTACTTTTTAAAAGTCATTGA
Found at i:9188666 original size:86 final size:83
Alignment explanation
Indices: 9188511--9188937 Score: 396
Period size: 86 Copynumber: 5.0 Consensus size: 83
9188501 CAAGGAGTAA
* * * * **
9188511 TTTA-TTTTTCAAAGTTG-TGATGCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTGA
1 TTTATTTTTTAAAAGTCGTTGA-GCCTCTGTTTAGAGGAGCTATTTA-TTTTTAAAAGTCATTGA
*
9188574 GCCTCTGATTAGAGGAGCCT
64 GCCTCTGTTTAGAGGAGCCT
* *
9188594 TTTATTTTTTAAAAGTCGTTAAGCCTCTGTTTAGAGGAGCTTTCTTTACTTTTTAAAAGTCATTG
1 TTTATTTTTTAAAAGTCGTTGAGCCTCTGTTTAGAGGAGC--TATTTA-TTTTTAAAAGTCATTG
* **
9188659 AGCCTCTGTTTAGAGAAGCAA
63 AGCCTCTGTTTAGAGGAGCCT
* ** * * * *
9188680 TTTACTTTCCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC-CTTTATTTTTAAAAGTCGTTAAGC
1 TTTATTTTTTAAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTATTTATTTTTAAAAGTCATTGAGC
*
9188744 CTCTGTTTAGAGGAGCTTT
66 CTCTGTTTAGAGGAGC-CT
*
9188763 GTTTATCTTTTTAAAAGTAGTTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCAAAA-TCA
1 -TTTAT-TTTTTAAAAGTCGTTGAGCCTCTGTTTAGAGGAGC--TATTTATTTTT--AAAAGTCA
* *
9188827 TTGAGCCTCTGTTTAGAAGAGCTTT
60 TTGAGCCTCTGTTTAGAGGAGC-CT
* * * * * **
9188852 GTTTATTTTTTTGAAA-TTGTTGAGCCTCTATTTAGATGAGCAATTTATCTTTCCAAAGTCATTG
1 -TTTA-TTTTTTAAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTATTTAT-TTTTAAAAGTCATTG
*
9188916 AGCCTCTGCTTAGAGGAGCCT
63 AGCCTCTGTTTAGAGGAGCCT
9188937 T
1 T
9188938 CGTTTATTTT
Statistics
Matches: 288, Mismatches: 41, Indels: 29
0.80 0.11 0.08
Matches are distributed among these distances:
82 32 0.11
83 9 0.03
84 33 0.11
85 37 0.13
86 100 0.35
87 3 0.01
88 31 0.11
89 38 0.13
90 5 0.02
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (83 bp):
TTTATTTTTTAAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTATTTATTTTTAAAAGTCATTGAGC
CTCTGTTTAGAGGAGCCT
Found at i:9188830 original size:171 final size:170
Alignment explanation
Indices: 9188532--9188937 Score: 477
Period size: 171 Copynumber: 2.4 Consensus size: 170
9188522 AAGTTGTGAT
*
9188532 GCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTGAGCCTCTGATTAGAGGAGCCTTTT
1 GCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTAAGCCTCTGATTAGAGGAGCCTTTT
* *
9188597 ATTTTTTAAAAGTCGTTAAGCCTCTGTTTAGAGGAGCTTTCTTTACTTTTTAAAAGTCATTGAGC
66 ATTTTTTAAAAGTAGTTAAGCCTCTGTTTAGAGGAGCTTTATTTACTTTTTAAAAGTCATTGAGC
9188662 CTCTGTTTAGAGAAGCAATTTACTTTCCAAAAGTCGTTGA
131 CTCTGTTTAGAGAAGCAATTTACTTTCCAAAAGTCGTTGA
* ** * * *
9188702 GCCTCTGATTAGAGGAGC-CTTTA-TTTTTAAAAGTCGTTAAGCCTCTGTTTAGAGGAGCTTTGT
1 GCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTAAGCCTCTGATTAGAGGAGC-CT-T
*
9188765 TTATCTTTTTAAAAGTAGTTGAGCCTCTGTTTAGAGGAGCTTTATTTA-TTTTTCCAAAA-TCAT
64 TTAT-TTTTTAAAAGTAGTTAAGCCTCTGTTTAGAGGAGCTTTATTTACTTTTT--AAAAGTCAT
** * *** *
9188828 TGAGCCTCTGTTTAGA-AGAGCTTTGTTTATTTTTTTGAAA-TTGTTGA
126 TGAGCCTCTGTTTAGAGA-AGC--AATTTA-CTTTCCAAAAGTCGTTGA
* * *
9188875 GCCTCT-ATTTAGATGAGCAATTTATCTTTCC-AAAGTCATTGAGCCTCTGCTTAGAGGAGCCTT
1 GCCTCTGA-TTAGAGGAGCAATTTA-CTTTCCAAAAGTCATTAAGCCTCTGATTAGAGGAGCCTT
9188938 CGTTTATTTT
Statistics
Matches: 198, Mismatches: 25, Indels: 23
0.80 0.10 0.09
Matches are distributed among these distances:
168 30 0.15
169 5 0.03
170 29 0.15
171 63 0.32
172 5 0.03
173 26 0.13
174 11 0.06
175 26 0.13
176 3 0.02
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (170 bp):
GCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTAAGCCTCTGATTAGAGGAGCCTTTT
ATTTTTTAAAAGTAGTTAAGCCTCTGTTTAGAGGAGCTTTATTTACTTTTTAAAAGTCATTGAGC
CTCTGTTTAGAGAAGCAATTTACTTTCCAAAAGTCGTTGA
Found at i:9188877 original size:215 final size:210
Alignment explanation
Indices: 9188511--9188937 Score: 522
Period size: 215 Copynumber: 2.0 Consensus size: 210
9188501 CAAGGAGTAA
* * *
9188511 TTTATTTTTCAAAGTTGTGATGCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTGAGC
1 TTTATTTTTAAAAGTCGTGAAGCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTGAGC
* * *
9188576 CTCTGATTAGAGGAGCCTTTTATTTTTTAAAAGTCGTTAAGCCTCTGTTTAGAGGAGCTTTCTTT
66 CTCTGATTAGAGGAGCCTTTTATTTTTCAAAAGTCATTAAGCCTCTGTTTAGAAGAGCTTTCTTT
* *
9188641 ACTTTTTAAAAGTCATTGAGCCTCTGTTTAGA-GAAGCAATTTA-CTTTCCAAAAGTCGTTGAGC
131 ACTTTTTAAAAGTCATTGAGCCTCTATTTAGATG-AGCAATTTATCTTTCC-AAAGTCATTGAGC
9188704 CTCTGATTAGAGGAGCC
194 CTCTGATTAGAGGAGCC
* * ** **
9188721 TTTATTTTTAAAAGTCGTTAAGCCTCTGTTTAGAGGAGCTTTGTTTATCTTTTTAAAAGT-AGTT
1 TTTATTTTTAAAAGTCGTGAAGCCTCTGATTAGAGGAGC--AATTTA-CTTTCCAAAAGTCA-TT
* * *
9188785 GAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCAAAA-TCATTGAGCCTCTGTTTAGAAGAGC
62 GAGCCTCTGATTAGAGGAGC-CT-TTTATTTTT-CAAAAGTCATTAAGCCTCTGTTTAGAAGAGC
* * * **
9188849 TTTGTTTATTTTTTTGAAA-TTGTTGAGCCTCTATTTAGATGAGCAATTTATCTTTCCAAAGTCA
124 TTTCTTTA-CTTTTTAAAAGTCATTGAGCCTCTATTTAGATGAGCAATTTATCTTTCCAAAGTCA
*
9188913 TTGAGCCTCTGCTTAGAGGAGCC
188 TTGAGCCTCTGATTAGAGGAGCC
9188936 TT
1 TT
9188938 CGTTTATTTT
Statistics
Matches: 184, Mismatches: 23, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
210 34 0.18
212 5 0.03
213 31 0.17
214 1 0.01
215 94 0.51
216 19 0.10
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (210 bp):
TTTATTTTTAAAAGTCGTGAAGCCTCTGATTAGAGGAGCAATTTACTTTCCAAAAGTCATTGAGC
CTCTGATTAGAGGAGCCTTTTATTTTTCAAAAGTCATTAAGCCTCTGTTTAGAAGAGCTTTCTTT
ACTTTTTAAAAGTCATTGAGCCTCTATTTAGATGAGCAATTTATCTTTCCAAAGTCATTGAGCCT
CTGATTAGAGGAGCC
Found at i:9189243 original size:4 final size:4
Alignment explanation
Indices: 9189236--9189375 Score: 68
Period size: 4 Copynumber: 36.5 Consensus size: 4
9189226 TTTTTGTACC
* *
9189236 TTAT TTAT TTAT TTA- TTAT TTAT TTA- TTAT TACTAT ATAT TTTT TTA-
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T--TAT TTAT TTAT TTAT
* * * * *
9189283 TTAT TTAT CTAT TAAT ATAT ATACT TTA- TTA- TTAT TTAT CTA- TTA-
1 TTAT TTAT TTAT TTAT TTAT TTA-T TTAT TTAT TTAT TTAT TTAT TTAT
* * *
9189328 TTA- TTA- TTA- TTAT TTAT CTAT TAATAT TT-T TTAT TTAT CTAA TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT T--TAT TTAT TTAT TTAT TTAT TTAT
9189374 TT
1 TT
9189376 TCTTTTAGTT
Statistics
Matches: 107, Mismatches: 18, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
3 32 0.30
4 65 0.61
5 3 0.03
6 7 0.07
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (4 bp):
TTAT
Found at i:9189265 original size:3 final size:3
Alignment explanation
Indices: 9189248--9189355 Score: 60
Period size: 3 Copynumber: 33.7 Consensus size: 3
9189238 ATTTATTTAT
* *
9189248 TTA TTA TTTA TTTA TTA TTA CTA TATA TT- TTT TTA TTA TTTA TCTA
1 TTA TTA -TTA -TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA T-TA
* *
9189294 TTA ATA -TA TATA CT- TTA TTA TTA TTTA TCTA TTA TTA TTA TTA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA
*
9189340 TTTA TCTA TTA ATA TT
1 -TTA T-TA TTA TTA TT
9189356 TTTTATTTAT
Statistics
Matches: 85, Mismatches: 8, Indels: 24
0.73 0.07 0.21
Matches are distributed among these distances:
2 5 0.06
3 50 0.59
4 30 0.35
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:9189315 original size:31 final size:32
Alignment explanation
Indices: 9189243--9189327 Score: 118
Period size: 31 Copynumber: 2.7 Consensus size: 32
9189233 ACCTTATTTA
* * *
9189243 TTTATTTATTATTTATTTATTATTACTATATAT
1 TTTA-TTATTATTTATCTATTAATACTATATAC
*
9189276 TTTTTTATTATTTATCTATTAATA-TATATAC
1 TTTATTATTATTTATCTATTAATACTATATAC
9189307 TTTATTATTATTTATCTATTA
1 TTTATTATTATTTATCTATTA
9189328 TTATTATTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 26 0.55
32 18 0.38
33 3 0.06
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.65
Consensus pattern (32 bp):
TTTATTATTATTTATCTATTAATACTATATAC
Found at i:9189350 original size:97 final size:97
Alignment explanation
Indices: 9189240--9189420 Score: 237
Period size: 97 Copynumber: 1.9 Consensus size: 97
9189230 TGTACCTTAT
* * * *
9189240 TTATTTATTTATTATTTATTTATTA-TTA-CT-ATATATTTTTTTATTATTTATCTATTAATATA
1 TTATTTATCTATTA-ATATTTATTATTTATCTAAT-TATTTTCTT-TTAGTTATCTATTAATATA
9189302 -TATACTTTATTATTA-TTTATCTATTATTATTATTA
63 TTAT-CTTTATT-TTATTTTATCTATTATTATTATTA
*
9189337 TTATTTATCTATTAATATTTTTTATTTATCTAATTATTTTCTTTTAGTTATCTATTAATATATTA
1 TTATTTATCTATTAATATTTATTATTTATCTAATTATTTTCTTTTAGTTATCTATTAATATATTA
9189402 TCTTTATTTTATTTTATCT
66 TCTTTATTTTATTTTATCT
9189421 TTTTTTTCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
96 11 0.15
97 48 0.65
98 13 0.18
99 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.65
Consensus pattern (97 bp):
TTATTTATCTATTAATATTTATTATTTATCTAATTATTTTCTTTTAGTTATCTATTAATATATTA
TCTTTATTTTATTTTATCTATTATTATTATTA
Found at i:9189355 original size:17 final size:17
Alignment explanation
Indices: 9189236--9189335 Score: 88
Period size: 15 Copynumber: 6.3 Consensus size: 17
9189226 TTTTTGTACC
*
9189236 TTATTTATTTA-T-TTA
1 TTATTTATCTATTATTA
*
9189251 TTATTTATTTATTATTA
1 TTATTTATCTATTATTA
* * *
9189268 CTATATAT-T-TTTTTA
1 TTATTTATCTATTATTA
*
9189283 TTATTTATCTATTAATA
1 TTATTTATCTATTATTA
*
9189300 -TATATA-CT-TTATTA
1 TTATTTATCTATTATTA
9189314 TTATTTATCTATTATTA
1 TTATTTATCTATTATTA
9189331 TTATT
1 TTATT
9189336 ATTATTTATC
Statistics
Matches: 68, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
14 5 0.07
15 29 0.43
16 10 0.15
17 24 0.35
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (17 bp):
TTATTTATCTATTATTA
Found at i:9189360 original size:17 final size:16
Alignment explanation
Indices: 9189241--9189376 Score: 52
Period size: 17 Copynumber: 8.4 Consensus size: 16
9189231 GTACCTTATT
9189241 TATTTATTTATTATT--
1 TATTT-TTTATTATTAA
* *
9189256 TATTTATTATTACTATA
1 TATTTTTTATTATTA-A
9189273 TATTTTTTTATTATT--
1 TA-TTTTTTATTATTAA
* * *
9189288 TATCTATTAATA-TATA
1 TATTTTTTATTATTA-A
*
9189304 TACTTTATTATTATT--
1 TA-TTTTTTATTATTAA
* * *
9189319 TATCTATTATTATTAT
1 TATTTTTTATTATTAA
*
9189335 TATTATTTATCTATTAA
1 TATTTTTTAT-TATTAA
9189352 TATTTTTTATTTATCTAA
1 TATTTTTTA-TTAT-TAA
9189370 TTATTTT
1 -TATTTT
9189377 CTTTTAGTTA
Statistics
Matches: 91, Mismatches: 15, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
13 1 0.01
14 25 0.27
15 9 0.10
16 9 0.10
17 26 0.29
18 15 0.16
19 6 0.07
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTTTTATTATTAA
Found at i:9189394 original size:43 final size:44
Alignment explanation
Indices: 9189314--9189397 Score: 127
Period size: 43 Copynumber: 1.9 Consensus size: 44
9189304 TACTTTATTA
*
9189314 TTATTTATCTATTATTATTATTATTATTTATCTATTAATATTTT
1 TTATTTATCTATTATTATTATTATTAGTTATCTATTAATATTTT
*
9189358 TTATTTATCTAATTATT-TTCTT-TTAGTTATCTATTAATAT
1 TTATTTATCT-ATTATTATTATTATTAGTTATCTATTAATAT
9189398 ATTATCTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
43 17 0.46
44 14 0.38
45 6 0.16
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (44 bp):
TTATTTATCTATTATTATTATTATTAGTTATCTATTAATATTTT
Found at i:9189408 original size:21 final size:21
Alignment explanation
Indices: 9189309--9189408 Score: 83
Period size: 21 Copynumber: 4.6 Consensus size: 21
9189299 ATATATACTT
*
9189309 TATTATTATTTATCTATTATTA
1 TATTA-TATTTATCTATTAATA
9189331 TTATTATTATTTATCTATTAATA
1 -TATTA-TATTTATCTATTAATA
* * * *
9189354 TTTTTTATTTATCTAATTATTT
1 TATTATATTTATCT-ATTAATA
* * *
9189376 TCTTTTAGTTATCTATTAATA
1 TATTATATTTATCTATTAATA
*
9189397 TATTATCTTTAT
1 TATTATATTTAT
9189409 TTTATTTTAT
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
21 22 0.35
22 20 0.32
23 21 0.33
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (21 bp):
TATTATATTTATCTATTAATA
Found at i:9189408 original size:43 final size:44
Alignment explanation
Indices: 9189309--9189408 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 44
9189299 ATATATACTT
*
9189309 TATTATTATTTATCTATTATTATTATTATTATTTATCTATTAATA
1 TATTA-TATTTATCTATTATTATTATTATTAGTTATCTATTAATA
* * *
9189354 TTTTTTATTTATCTAATTATT-TTCTT-TTAGTTATCTATTAATA
1 TATTATATTTATCT-ATTATTATTATTATTAGTTATCTATTAATA
*
9189397 TATTATCTTTAT
1 TATTATATTTAT
9189409 TTTATTTTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
43 25 0.53
44 13 0.28
45 9 0.19
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (44 bp):
TATTATATTTATCTATTATTATTATTATTAGTTATCTATTAATA
Found at i:9190343 original size:6 final size:6
Alignment explanation
Indices: 9190318--9190370 Score: 67
Period size: 6 Copynumber: 9.2 Consensus size: 6
9190308 AATTATTTAG
*
9190318 TATTTCT TA-TTT TA-TTT TATTTT TATCTT TATTTT TATTTT TA-TTT
1 TATTT-T TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
9190364 TATTTT T
1 TATTTT T
9190371 TAATTTTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
5 13 0.31
6 27 0.64
7 2 0.05
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:9190348 original size:12 final size:11
Alignment explanation
Indices: 9190318--9190370 Score: 63
Period size: 11 Copynumber: 4.6 Consensus size: 11
9190308 AATTATTTAG
9190318 TATTTCTTATTT
1 TATTT-TTATTT
9190330 TA-TTTTATTTT
1 TATTTTTA-TTT
*
9190341 TATCTTTATTTT
1 TATTTTTA-TTT
9190353 TATTTTTATTT
1 TATTTTTATTT
9190364 TATTTTT
1 TATTTTT
9190371 TAATTTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
10 3 0.08
11 17 0.46
12 17 0.46
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:9190371 original size:12 final size:12
Alignment explanation
Indices: 9190318--9190377 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
9190308 AATTATTTAG
*
9190318 TATTTCTTATTT
1 TATTTTTTATTT
*
9190330 TATTTTAT-TTT
1 TATTTTTTATTT
*
9190341 TA-TCTTTATTT
1 TATTTTTTATTT
9190352 T-TATTTTTATTT
1 TAT-TTTTTATTT
9190364 TATTTTTTAATTT
1 TATTTTTT-ATTT
9190377 T
1 T
9190378 CTTTAAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
10 3 0.08
11 9 0.24
12 20 0.53
13 6 0.16
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.78
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:9190495 original size:59 final size:58
Alignment explanation
Indices: 9190395--9190616 Score: 225
Period size: 58 Copynumber: 3.7 Consensus size: 58
9190385 TAAAATTCCA
*
9190395 AAAAAAATATTTTATAATTGAAAAGTTGAAAGTATCAATTTTCCTTGGAAAATAAGTTTTTCT
1 AAAAAAATATTTT-TGA--GAAAAGTTGAAAGTATCAATTTT-CTT-GAAAATAAGTTTTTCT
* * *
9190458 -AAACAATA-TTTTGAGAAAAGTTGGAAGTATTCAATTTTTCTTAAAAATAAG-TTTTCT
1 AAAAAAATATTTTTGAGAAAAGTTGAAAGTA-TCAA-TTTTCTTGAAAATAAGTTTTTCT
* *
9190515 AAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAATTTTTTTTT
1 AAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTC-TTGAAAATAA-GTTTTTCT
*** * *
9190575 AAAAAAGGGTTTTTTAGGAAAAAGTTAAAAGTATCAATTTTC
1 AAAAAAATATTTTTGA-G-AAAAGTTGAAAGTATCAATTTTC
9190617 CTTGTACGAA
Statistics
Matches: 136, Mismatches: 14, Indels: 19
0.80 0.08 0.11
Matches are distributed among these distances:
57 11 0.08
58 42 0.31
59 27 0.20
60 23 0.17
61 4 0.03
62 29 0.21
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.40
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTCTTGAAAATAAGTTTTTCT
Found at i:9191528 original size:181 final size:177
Alignment explanation
Indices: 9191210--9191775 Score: 618
Period size: 181 Copynumber: 3.2 Consensus size: 177
9191200 TAATAATTCC
* *
9191210 ATTTAAACAATTATCTATTTCAAATCATTATGAA-CTTTTGTGTTGTCATAAAACAATTATTTTT
1 ATTTGAACAATTATCTATTTCAAATCATTAT-AACCTTTTGTTTTGTCATAAAACAATTATTTTT
* * * * *
9191274 CATCATACAAGCCTATTCATAATAAAGTAATACTAATTTATTAATATTTGAAAAATTAATAAGTA
65 CTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTG-AAAATTAATAA-T-
*
9191339 GGAGATTTAAAAAATAAATCTATTTATCGAATCAGTTCAAATAGTTATGACT
127 GAAGATTTAAAAAATAAATCTATTTA-CGAATCAGTTCAAATAGTTATGACT
* * * *
9191391 ATTTGAACAATTATATATTTCCAATCAATATAACCTTTTGTTTTGTCATAAAACAATTATTTATC
1 ATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTATTTTTC
* * *
9191456 TTCATATAAGCTTATTCAAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAACTGA
66 TTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TGAAAATTAATAA-TGA
* * * * * * *
9191521 TAGATTTAAAAAATAAATTTGTTTACCGAACCAATTCAAATAGCTAAGGCT
129 -AGATTTAAAAAATAAATCTATTTA-CGAATCAGTTCAAATAGTTATGACT
* * * * * * * *
9191572 ATATGAATAATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCACAAAACAAATGTTTTTG
1 ATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTATTTTTC
* * * * *
9191637 TTCATATAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTTCAAAATTAATAA-G-AG
66 TTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAATTAATAATGAAG
* * * * * *
9191700 ATTTAATAAGTAAATCTATTTA-GCATACTAGTTCAATTAGTTATAACA
131 ATTTAAAAAATAAATCTATTTACGAAT-C-AGTTCAAATAGTTATGACT
* *
9191748 ATTTGAACATTTATTTATTTCAAATCAT
1 ATTTGAACAATTATCTATTTCAAATCAT
9191776 ACTAAATTAA
Statistics
Matches: 318, Mismatches: 62, Indels: 15
0.81 0.16 0.04
Matches are distributed among these distances:
174 2 0.01
175 1 0.00
176 55 0.17
178 1 0.00
180 14 0.04
181 243 0.76
182 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (177 bp):
ATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTATTTTTC
TTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAATTAATAATGAAG
ATTTAAAAAATAAATCTATTTACGAATCAGTTCAAATAGTTATGACT
Found at i:9192785 original size:175 final size:175
Alignment explanation
Indices: 9192493--9192815 Score: 508
Period size: 175 Copynumber: 1.8 Consensus size: 175
9192483 AATTTAATTT
* * **
9192493 ATTTTTTTAAATCTTTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTTATTTTGA
1 ATTTTTTTAAATCTTTTACTTATTAAATGTTGGAATATTAATAAATTAG-ATTATTTTATTCGGA
9192558 ATAAGCTTATATAGACAAAAACAATTGGTTCATCACAAAACAAAAGGTCATAACTATTTGAAATA
65 ATAAGCTTATATAGACAAAAACAATTGGTTCATCACAAAACAAAAGGTCATAACTATTTGAAATA
*
9192623 GATAATTGTTCAAATAGTTAGATCTATTTGAACATGTTCAAAAGTA
130 AATAATTGTTCAAATAGTTAGATCTATTTGAACATGTTCAAAAGTA
9192669 ATTTTTTTAAAAT-TTTTACTTATTAAAAT-TTGGAATATTAATAAATTTAG-TTATTTTATTCG
1 ATTTTTTT-AAATCTTTTACTTATT-AAATGTTGGAATATTAATAAA-TTAGATTATTTTATTCG
* * * *
9192731 GAATAAGCTTGTATGGACAGAAACAATTGGTTTATCACAAAACAAAAGGTCATAACTATTTGAAA
63 GAATAAGCTTATATAGACAAAAACAATTGGTTCATCACAAAACAAAAGGTCATAACTATTTGAAA
9192796 TAAATAATTGTTCAAATAGT
128 TAAATAATTGTTCAAATAGT
9192816 CAGAATTATT
Statistics
Matches: 135, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
175 90 0.67
176 34 0.25
177 11 0.08
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (175 bp):
ATTTTTTTAAATCTTTTACTTATTAAATGTTGGAATATTAATAAATTAGATTATTTTATTCGGAA
TAAGCTTATATAGACAAAAACAATTGGTTCATCACAAAACAAAAGGTCATAACTATTTGAAATAA
ATAATTGTTCAAATAGTTAGATCTATTTGAACATGTTCAAAAGTA
Found at i:9194406 original size:180 final size:176
Alignment explanation
Indices: 9194080--9195108 Score: 676
Period size: 180 Copynumber: 5.8 Consensus size: 176
9194070 TTTTTGTTCA
* * * * * * * * * *
9194080 ACAAGCTTATTCGAAGTAAAATATTGCTAAATCAATAATATTCTAAACATTAATAAGTAAGGATT
1 ACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT-AAAAAATT-ATAAGTAA-AAAT
* * * * * * * * * *
9194145 TCAAAAATAAATGTGTTTGCTGAATCAATTTAAATAGTTAAGACTATTAGAACAATTATCTATTT
63 T-AAAAAAAAATCTATTTACCGAATCAGTTCAAATAATTATGACTATTTGAACAATTATCTATTT
* * * *
9194210 CAAATTGTTTTGACCTTTTGTTTAGTCATAAAATAATTGCTTCAACTCAT
127 CAAATCGTTATGACCTTTTGTTTAGTCATAAAACAATTGTTTCAACTCAT
* *
9194260 ACATGCTTATTCGAAATAAAACAATACTAATTTATTAATATTCAAAAAATTATTAAGTAATAAAT
1 ACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT-AAAAAATTA-TAAGTAA-AAAT
* *
9194325 TAGAAAAAAAATCTATTTACCGAA-CAAGTTCAAATATTTTTGACTATTTGAACAATTATCTATT
63 TA-AAAAAAAATCTATTTACCGAATC-AGTTCAAATAATTATGACTATTTGAACAATTATCTATT
* * ** *
9194389 TTAAATCGTTATGACCTTATAT-TTTA-TCATAAAACGATTGTTTCAGTTTAT
126 TCAAATCGTTATGACCTT-T-TGTTTAGTCATAAAACAATTGTTTCAACTCAT
* * * *
9194440 AAAAGCTTA-TCTGAAATAAAAATATTATTACTTTATTAATATTATAAAAATTGATAAGTTAAAG
1 ACAAGCTTATTC-GAAAT-AAAATAATACTAATTTATTAATATTA-AAAAATT-ATAAG-TAAA-
* * * * * *
9194504 ATTTAAAATATAAATC-AGTTTAGCGAATCAGTTCAAATAATTATGGCCATTTAAACAATTATCT
60 AATTAAAA-AAAAATCTA-TTTACCGAATCAGTTCAAATAATTATGACTATTTGAACAATTATCT
* * *
9194568 ATTTCAAATCATTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTC-A-TCAT
123 ATTTCAAATCGTTATGACCTTTTGTTTAGTCATAAAACAATTG-TTTCAACTCAT
* * * * *
9194621 ACAAGCCTATTC-ATAATAAAATAATACTAATTTATAAATATTTGAAAAATTAATAAGTAGGAGA
1 ACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATA-TTAAAAAATT-ATAAGTA-AAAA
* * * * *
9194685 TTAAAAAATAAATATGTTTATCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATATATT
62 TTAAAAAA-AAATCTATTTACCGAATCAGTTCAAATAATTATGACTATTTGAACAATTATCTATT
* * * * *
9194750 TCCAATC----T-ACCTTTTGTTTTGTCATAAAATAATTATTT-ATCTTCAT
126 TCAAATCGTTATGACCTTTTGTTTAGTCATAAAACAATTGTTTCAAC-TCAT
* * * * * * * *
9194796 ACAAGCTTATTCAAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAACTGATAGAT
1 ACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTA-AAAAATT-ATAAGT-A-AAAA
* * ** * * * * * *
9194861 TTAAAAAATAAATTTGTTTACTAAACCAATTCAAAT-ATTAAGGCTATATGAATAATTATCTATT
62 TTAAAAAA-AAATCTATTTACCGAATCAGTTCAAATAATTATGACTATTTGAACAATTATCTATT
** * * ****
9194925 TCAAATCGTTATGATTTTTTGTTCTA-TCGTAAAACAAATGTTTTTGTTCAT
126 TCAAATCGTTATGACCTTTTGTT-TAGTCATAAAACAATTGTTTCAACTCAT
* * * * * * *
9194976 ATAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG--AGATTT
1 ACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTAAAAAATT-ATAAGTAAAAATT
* * * * * * *
9195039 AACAAATAAATCTATTTACC--ATACTAGTTCAATTAGTTATAACAATTTGAACATTTATTTATT
64 AA-AAAAAAATCTATTTACCGAAT-C-AGTTCAAATAATTATGACTATTTGAACAATTATCTATT
9195102 TCAAATC
126 TCAAATC
9195109 ATACTAAATT
Statistics
Matches: 666, Mismatches: 142, Indels: 85
0.75 0.16 0.10
Matches are distributed among these distances:
173 3 0.00
174 27 0.04
175 79 0.12
176 57 0.09
177 29 0.04
178 1 0.00
179 67 0.10
180 248 0.37
181 64 0.10
182 86 0.13
183 5 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (176 bp):
ACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTAAAAAATTATAAGTAAAAATTAA
AAAAAAATCTATTTACCGAATCAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA
TCGTTATGACCTTTTGTTTAGTCATAAAACAATTGTTTCAACTCAT
Found at i:9195282 original size:16 final size:15
Alignment explanation
Indices: 9195261--9195326 Score: 50
Period size: 16 Copynumber: 4.4 Consensus size: 15
9195251 ATTAAACTGT
9195261 TAATAATAAATAATCA
1 TAATAATAAATAAT-A
*
9195277 TAATAACAAA-AAT-
1 TAATAATAAATAATA
*
9195290 TAATTAGTAAATAAT-
1 TAA-TAATAAATAATA
9195305 TAAATAATCAAATAAT-
1 T-AATAAT-AAATAATA
9195321 TAATAA
1 TAATAA
9195327 ACAAATAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
13 3 0.07
14 5 0.12
15 15 0.36
16 19 0.45
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (15 bp):
TAATAATAAATAATA
Found at i:9196276 original size:9 final size:9
Alignment explanation
Indices: 9196270--9196306 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
9196260 ATTATTAAAT
9196270 ATATTAATA
1 ATATTAATA
9196279 ATATTAAT-
1 ATATTAATA
*
9196287 ATAATAATA
1 ATATTAATA
9196296 ATATTAATA
1 ATATTAATA
9196305 AT
1 AT
9196307 TTATTCAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
ATATTAATA
Found at i:9196289 original size:17 final size:17
Alignment explanation
Indices: 9196262--9196304 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
9196252 TTGATTGGAT
*
9196262 TATTAAATATATTAATAA
1 TATT-AATATAATAATAA
9196280 TATTAATATAATAATAA
1 TATTAATATAATAATAA
9196297 TATTAATA
1 TATTAATA
9196305 ATTTATTCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TATTAATATAATAATAA
Found at i:9196342 original size:19 final size:19
Alignment explanation
Indices: 9196320--9196358 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9196310 TTCAGTAGCC
*
9196320 ATTAATA-ATATTGTTAATT
1 ATTAATACA-ATTATTAATT
9196339 ATTAATACAATTATTAATT
1 ATTAATACAATTATTAATT
9196358 A
1 A
9196359 ATGATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTAATACAATTATTAATT
Found at i:9196847 original size:19 final size:19
Alignment explanation
Indices: 9196820--9196858 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
9196810 TTACCAAACC
*
9196820 AGTTTAAATAATTATGACT
1 AGTTCAAATAATTATGACT
* *
9196839 AGTTCAAATAGTTATTACT
1 AGTTCAAATAATTATGACT
9196858 A
1 A
9196859 TTTGAACAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (19 bp):
AGTTCAAATAATTATGACT
Found at i:9197134 original size:14 final size:14
Alignment explanation
Indices: 9197082--9197136 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
9197072 TATATGTTTA
* *
9197082 AATTTATTAACTAT
1 AATTTAATAATTAT
*
9197096 AA-TTAATAATAAT
1 AATTTAATAATTAT
*
9197109 AATATAATAATTAT
1 AATTTAATAATTAT
*
9197123 AATTTAACAATTAT
1 AATTTAATAATTAT
9197137 TTAATAATAG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
13 10 0.30
14 23 0.70
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTTAATAATTAT
Found at i:9197727 original size:13 final size:14
Alignment explanation
Indices: 9197709--9197741 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
9197699 ATTTATTTAT
9197709 AATTATA-TAGATA
1 AATTATATTAGATA
9197722 AATTATATTAGATA
1 AATTATATTAGATA
9197736 ATATTA
1 A-ATTA
9197742 ATAATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 7 0.39
15 4 0.22
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTATATTAGATA
Found at i:9198408 original size:14 final size:15
Alignment explanation
Indices: 9198376--9198416 Score: 66
Period size: 14 Copynumber: 2.7 Consensus size: 15
9198366 TTTATTAACT
9198376 ATAATTATTAATAATA
1 ATAATTA-TAATAATA
9198392 ATAATTATAAT-ATA
1 ATAATTATAATAATA
9198406 ATAATTATAAT
1 ATAATTATAAT
9198417 TTAACGATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 14 0.56
15 4 0.16
16 7 0.28
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATTATAATAATA
Found at i:9198624 original size:44 final size:42
Alignment explanation
Indices: 9198574--9198655 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 42
9198564 AAGACTAATA
*
9198574 TATTATAA-AGTTATAATTTAATAATTTAATAAATTATATTGTAT
1 TATTATAATA-TTATAA-TAAATAATTTAA-AAATTATATTGTAT
*
9198618 TATTATAATATTATAATAAATAATTTAAACATTATATT
1 TATTATAATATTATAATAAATAATTTAAAAATTATATT
9198656 ATTTAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
42 9 0.26
43 11 0.31
44 14 0.40
45 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (42 bp):
TATTATAATATTATAATAAATAATTTAAAAATTATATTGTAT
Found at i:9200887 original size:40 final size:41
Alignment explanation
Indices: 9200843--9200923 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 41
9200833 AATAACCAAT
*
9200843 TAATTAAGTTATTTAATTAGT-ATATT-TTAAATTAATAATA
1 TAATTAAGTTATATAATTAGTAATATTATTAAA-TAATAATA
* * *
9200883 TAATTAATTTATATAATTATTAATATTATTATATAATAATA
1 TAATTAAGTTATATAATTAGTAATATTATTAAATAATAATA
9200924 AAAAATATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 18 0.51
41 13 0.37
42 4 0.11
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (41 bp):
TAATTAAGTTATATAATTAGTAATATTATTAAATAATAATA
Found at i:9200889 original size:12 final size:12
Alignment explanation
Indices: 9200872--9200920 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
9200862 GTATATTTTA
9200872 AATTAATAATAT
1 AATTAATAATAT
*
9200884 AATTAATTTATAT
1 AATTAA-TAATAT
*
9200897 AATTATTAATAT
1 AATTAATAATAT
*
9200909 TATTATATAATA
1 AATTA-ATAATA
9200921 ATAAAAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 15 0.50
13 15 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
AATTAATAATAT
Found at i:9201210 original size:23 final size:22
Alignment explanation
Indices: 9201181--9201232 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
9201171 ATGCAATAAA
9201181 TAATTA-TATTAATATAAT-TTATT
1 TAATTATTA-TAAT-TAATATTA-T
9201204 TAATTATTATAATTAATATTAT
1 TAATTATTATAATTAATATTAT
9201226 TAATTAT
1 TAATTAT
9201233 CTTAGATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 12 0.44
23 13 0.48
24 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TAATTATTATAATTAATATTAT
Found at i:9201227 original size:18 final size:18
Alignment explanation
Indices: 9201187--9201300 Score: 53
Period size: 18 Copynumber: 6.4 Consensus size: 18
9201177 TAAATAATTA
* *
9201187 TATTAATATAATTTAT-T
1 TATTATTATAATTAATAT
9201204 TAATTATTATAATTAATAT
1 T-ATTATTATAATTAATAT
* *
9201223 TATTAATTAT-CTTAGATTT
1 TATT-ATTATAATTA-ATAT
* *
9201242 CTAATATTATTA-TAATAT
1 -TATTATTATAATTAATAT
*
9201260 TATT-CTATAATT--TAT
1 TATTATTATAATTAATAT
* *
9201275 TATTAGTA-AACTAATACT
1 TATTATTATAATTAATA-T
9201293 TATTATTA
1 TATTATTA
9201301 ATTAAAAAAA
Statistics
Matches: 73, Mismatches: 13, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
15 10 0.14
16 6 0.08
17 7 0.10
18 30 0.41
19 17 0.23
20 3 0.04
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (18 bp):
TATTATTATAATTAATAT
Found at i:9201335 original size:13 final size:15
Alignment explanation
Indices: 9201317--9201362 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
9201307 AAAATTTAAA
9201317 ATTAATA-AATTA-T
1 ATTAATATAATTATT
9201330 ATTAATATTAATTATT
1 ATTAATA-TAATTATT
* *
9201346 ATTAACATAATAATT
1 ATTAATATAATTATT
9201361 AT
1 AT
9201363 CATTATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAATATAATTATT
Done.