Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 53 of 121
Found at i:9201356 original size:21 final size:22
Alignment explanation
Indices: 9201332--9201384 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
9201322 TAAATTATAT
9201332 TAATATTAATTATTATT-AACA
1 TAATATTAATTATTATTAAACA
*
9201353 TAATAATT-ATCATTATTAAACA
1 TAAT-ATTAATTATTATTAAACA
9201375 -AAT-TTAATTA
1 TAATATTAATTA
9201385 AAATATTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 2 0.07
20 3 0.11
21 15 0.56
22 7 0.26
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATTAATTATTATTAAACA
Found at i:9201635 original size:32 final size:31
Alignment explanation
Indices: 9201540--9201638 Score: 81
Period size: 36 Copynumber: 3.0 Consensus size: 31
9201530 ATTATTAAAA
* * *
9201540 ATAATTTAATAATATTTATAATATATTAATAT
1 ATAAATTAATAATAATTATATTAT-TTAATAT
* * *
9201572 TTACACTAAATAAATAATTATAATGTAATTTAATACT
1 ATA-AATTAAT-AATAATTAT-AT-T-ATTTAATA-T
9201609 ATAAATTAATAATAATTATATTATTTAATA
1 ATAAATTAATAATAATTATATTATTTAATA
9201639 ATTATTTCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
32 10 0.19
33 6 0.11
34 10 0.19
35 10 0.19
36 12 0.23
37 5 0.09
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (31 bp):
ATAAATTAATAATAATTATATTATTTAATAT
Found at i:9201728 original size:17 final size:18
Alignment explanation
Indices: 9201680--9201730 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 18
9201670 AGTTTTAAAT
*
9201680 TATTTTAATATAGTTATTG
1 TATTATAATATA-TTATTG
9201699 TATTAT-A-ATATTATT-
1 TATTATAATATATTATTG
*
9201714 TTTTATAATATATTATT
1 TATTATAATATATTATT
9201731 AATAGTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 5 0.18
16 6 0.21
17 11 0.39
18 1 0.04
19 5 0.18
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (18 bp):
TATTATAATATATTATTG
Found at i:9201764 original size:36 final size:36
Alignment explanation
Indices: 9201698--9201782 Score: 93
Period size: 36 Copynumber: 2.3 Consensus size: 36
9201688 TATAGTTATT
* * *
9201698 GTATTATAATATTATTTTTTATAATATATTATTAATA
1 GTATTATAA-ATTATTTTTAAAAATATATTAATAATA
*
9201735 GTATTATAAATTATTTTTAACAAAT-TATTAATATTA
1 GTATTATAAATTATTTTTAA-AAATATATTAATAATA
9201771 -TAATTATAAATT
1 GT-ATTATAAATT
9201783 TATAAGTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 1 0.02
36 29 0.69
37 12 0.29
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (36 bp):
GTATTATAAATTATTTTTAAAAATATATTAATAATA
Found at i:9201918 original size:6 final size:6
Alignment explanation
Indices: 9201899--9201951 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
9201889 TGTTATAAAT
*
9201899 TATTAA AATT-A TATTAA TATTAA TA-TAA T-TTAA GTATTAA TATTAA
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA -TATTAA TATTAA
9201945 TTATTAA
1 -TATTAA
9201952 ATAACTTGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
5 11 0.28
6 19 0.47
7 10 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (6 bp):
TATTAA
Found at i:9201919 original size:17 final size:18
Alignment explanation
Indices: 9201899--9201947 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
9201889 TGTTATAAAT
*
9201899 TATTAAAATTATATTAA-
1 TATTAATATTATATTAAG
*
9201916 TATTAATATAAT-TTAAG
1 TATTAATATTATATTAAG
9201933 TATTAATATTA-ATTA
1 TATTAATATTATATTA
9201948 TTAAATAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 4 0.15
17 23 0.85
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TATTAATATTATATTAAG
Found at i:9201947 original size:27 final size:25
Alignment explanation
Indices: 9201917--9201994 Score: 59
Period size: 25 Copynumber: 3.0 Consensus size: 25
9201907 TTATATTAAT
*
9201917 ATTAATATAATTTAAGTATTAATATTA
1 ATTAATATAATTTAA-CATTAA-ATTA
* * *
9201944 ATTATTAAATAACTTGACATTAAATTA
1 ATTA--ATATAATTTAACATTAAATTA
*
9201971 ATTAATATAATCTT-ATATTAAATT
1 ATTAATATAAT-TTAACATTAAATT
9201995 GATAAAACTA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
25 14 0.34
26 2 0.05
27 12 0.29
28 5 0.12
29 8 0.20
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (25 bp):
ATTAATATAATTTAACATTAAATTA
Found at i:9202058 original size:18 final size:17
Alignment explanation
Indices: 9202022--9202060 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
9202012 AATATATTAT
9202022 ATAA-TATTATTAAATA
1 ATAATTATTATTAAATA
*
9202038 ATAATTATTATTTAATGA
1 ATAATTATTATTAAAT-A
9202056 ATAAT
1 ATAAT
9202061 AAGTTATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 10 0.50
18 6 0.30
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
ATAATTATTATTAAATA
Found at i:9202754 original size:17 final size:17
Alignment explanation
Indices: 9202732--9202793 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
9202722 AATTATAAAA
9202732 TATTAATTTGATTATAC
1 TATTAATTTGATTATAC
* *
9202749 TATTAAATTAGATTGATATTGT
1 TATT-AATTTGATT-ATA---C
*
9202771 TATTAGTTTGATTATAC
1 TATTAATTTGATTATAC
9202788 TATTAA
1 TATTAA
9202794 ATCTAATTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 10
0.68 0.12 0.20
Matches are distributed among these distances:
17 9 0.26
18 8 0.24
19 3 0.09
20 3 0.09
21 7 0.21
22 4 0.12
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.52
Consensus pattern (17 bp):
TATTAATTTGATTATAC
Found at i:9202764 original size:22 final size:22
Alignment explanation
Indices: 9202739--9202805 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
9202729 AAATATTAAT
9202739 TTGATTATACTATTAAATTAGA
1 TTGATTATACTATTAAATTAGA
* *
9202761 TTGA-TAT--TGTT--ATTAGT
1 TTGATTATACTATTAAATTAGA
9202778 TTGATTATACTATTAAATCTA-A
1 TTGATTATACTATTAAAT-TAGA
9202800 TTGATT
1 TTGATT
9202806 TAACTGTTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
17 9 0.26
18 3 0.09
19 3 0.09
20 3 0.09
21 3 0.09
22 12 0.34
23 2 0.06
ACGTcount: A:0.34, C:0.04, G:0.10, T:0.51
Consensus pattern (22 bp):
TTGATTATACTATTAAATTAGA
Found at i:9203011 original size:13 final size:13
Alignment explanation
Indices: 9202995--9203053 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
9202985 TTATATTTGT
9202995 TTATAATATATAA
1 TTATAATATATAA
9203008 TTAT--TATAT-A
1 TTATAATATATAA
9203018 TCTATAATATATTTAA
1 T-TATAATATA--TAA
*
9203034 TTA-AGTATATAA
1 TTATAATATATAA
9203046 TTATAATA
1 TTATAATA
9203054 ATTATAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
10 2 0.05
11 8 0.22
12 6 0.16
13 11 0.30
14 5 0.14
15 3 0.08
16 2 0.05
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (13 bp):
TTATAATATATAA
Found at i:9203069 original size:27 final size:27
Alignment explanation
Indices: 9202997--9203069 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
9202987 ATATTTGTTT
9202997 ATAATATATAA-TTATTATATATCTATA
1 ATAAT-TATAATTTATTATATATCTATA
* *
9203024 ATATATT-TAATTAAGTATATAAT-TATA
1 ATA-ATTATAATTTATTATAT-ATCTATA
*
9203051 ATAATTATAATTTTTTATA
1 ATAATTATAATTTATTATA
9203070 ATATAAAAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
26 6 0.16
27 27 0.73
28 4 0.11
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (27 bp):
ATAATTATAATTTATTATATATCTATA
Found at i:9203188 original size:11 final size:11
Alignment explanation
Indices: 9203140--9203236 Score: 51
Period size: 11 Copynumber: 8.6 Consensus size: 11
9203130 ACTATAATCC
*
9203140 TTATAATTTAG
1 TTATAATTTAA
9203151 TTATAATTATCAGA
1 TTATAATT-T-A-A
*
9203165 TTA-ATATTAAA
1 TTATA-ATTTAA
9203176 TTATAATTTAA
1 TTATAATTTAA
*
9203187 TT-TATTATTAA
1 TTATAAT-TTAA
9203198 TTAATAA-TTAA
1 TT-ATAATTTAA
*
9203209 TTA-ATTTTGAA
1 TTATAATTT-AA
*
9203220 ATAT-ATTTAA
1 TTATAATTTAA
9203230 TTATAAT
1 TTATAAT
9203237 AGTATATAGA
Statistics
Matches: 65, Mismatches: 9, Indels: 24
0.66 0.09 0.24
Matches are distributed among these distances:
9 1 0.02
10 11 0.17
11 40 0.62
12 3 0.05
13 4 0.06
14 6 0.09
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (11 bp):
TTATAATTTAA
Found at i:9203419 original size:21 final size:21
Alignment explanation
Indices: 9203388--9203442 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
9203378 TTATTAATAT
*
9203388 ATTATAA-TAATA-AATTAAA
1 ATTATAATTAATATAACTAAA
*
9203407 TTTAATAATTAATATAACTAAA
1 ATT-ATAATTAATATAACTAAA
9203429 ATTATAATTAATAT
1 ATTATAATTAATAT
9203443 TATACTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.07
20 4 0.13
21 16 0.53
22 8 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTATAATTAATATAACTAAA
Found at i:9203538 original size:18 final size:18
Alignment explanation
Indices: 9203530--9203630 Score: 62
Period size: 18 Copynumber: 5.1 Consensus size: 18
9203520 TTATGTTAAT
9203530 TTATAATATAATTATAAA
1 TTATAATATAATTATAAA
9203548 TTATAATATAAAATTA-ATAA
1 TTATAATAT--AATTATA-AA
9203568 TT-TAATATAAATTATTATTAA
1 TTATAATAT-AATTA-TA--AA
9203589 CTTATAATAATTAATTAATAAA
1 -TTATAAT-A-TAATT-ATAAA
* *
9203611 TTTTATATATTATTATAAA
1 TTATA-ATATAATTATAAA
9203630 T
1 T
9203631 AATTATTAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 23
0.73 0.02 0.24
Matches are distributed among these distances:
18 15 0.22
19 13 0.19
20 14 0.20
21 8 0.12
22 6 0.09
23 4 0.06
24 7 0.10
25 2 0.03
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (18 bp):
TTATAATATAATTATAAA
Found at i:9203584 original size:21 final size:22
Alignment explanation
Indices: 9203526--9203647 Score: 68
Period size: 19 Copynumber: 5.8 Consensus size: 22
9203516 AATATTATGT
9203526 TAATTT-ATAATATAATTA-T-A
1 TAATTTAAT-ATATAATTATTAA
9203546 -AATTATAATATA-AA--ATTAA
1 TAATT-TAATATATAATTATTAA
*
9203565 TAATTTAATATA-AATTATTAT
1 TAATTTAATATATAATTATTAA
*
9203586 TAACTT-ATA-ATAATTAATTAA
1 TAATTTAATATATAATT-ATTAA
* * *
9203607 TAAATTTTATATATTATTATAAA
1 T-AATTTAATATATAATTATTAA
9203630 TAATTATTAATAT-TAATT
1 TAA-T-TTAATATATAATT
9203648 TTTAGATATA
Statistics
Matches: 80, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
17 1 0.01
18 1 0.01
19 17 0.21
20 15 0.19
21 16 0.20
22 6 0.08
23 13 0.16
24 11 0.14
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (22 bp):
TAATTTAATATATAATTATTAA
Found at i:9203594 original size:42 final size:41
Alignment explanation
Indices: 9203529--9203630 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 41
9203519 ATTATGTTAA
*
9203529 TTTATAATATAATTA-TAAATTATAAT-ATAAAATTAAT-AAT
1 TTTATAA-ATTATTATTAAATTATAATAAT-AAATTAATAAAT
* *
9203569 TTAATATAAATTATTATTAACTTATAATAATTAATTAATAAAT
1 TT--TATAAATTATTATTAAATTATAATAATAAATTAATAAAT
*
9203612 TTTATATATTATTA-TAAAT
1 TTTATAAATTATTATTAAAT
9203631 AATTATTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
40 6 0.12
41 17 0.33
42 22 0.42
43 7 0.13
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (41 bp):
TTTATAAATTATTATTAAATTATAATAATAAATTAATAAAT
Found at i:9204137 original size:21 final size:21
Alignment explanation
Indices: 9204104--9204155 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
9204094 TTAAAATTAA
* *
9204104 ATTATAAAT-ATAATTTA-TT
1 ATTATTAATAATAAATTACTT
9204123 ATTTATTAATAATAAATTACTT
1 A-TTATTAATAATAAATTACTT
9204145 ATTATTAATAA
1 ATTATTAATAA
9204156 ACAATTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 7 0.25
21 17 0.61
22 3 0.11
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTAATAATAAATTACTT
Found at i:9204141 original size:18 final size:18
Alignment explanation
Indices: 9204120--9204156 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9204110 AATATAATTT
*
9204120 ATTATTTATTAATAATAA
1 ATTACTTATTAATAATAA
*
9204138 ATTACTTATTATTAATAA
1 ATTACTTATTAATAATAA
9204156 A
1 A
9204157 CAATTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTACTTATTAATAATAA
Found at i:9204161 original size:21 final size:19
Alignment explanation
Indices: 9204125--9204168 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
9204115 AATTTATTAT
9204125 TTATTAATAATAAATTACTTA
1 TTATTAATAATAAATT--TTA
9204146 TTATTAATAA-ACAATTTTA
1 TTATTAATAATA-AATTTTA
9204165 TTAT
1 TTAT
9204169 AATTTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.32
20 1 0.05
21 14 0.64
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATTAATAATAAATTTTA
Found at i:9204713 original size:10 final size:10
Alignment explanation
Indices: 9204671--9204735 Score: 54
Period size: 10 Copynumber: 7.1 Consensus size: 10
9204661 GATATAGTTC
*
9204671 ATATAAAATT
1 ATATATAATT
9204681 ATA-ATAATT
1 ATATATAATT
9204690 AT-TA-AA-T
1 ATATATAATT
9204697 A-ATATAATT
1 ATATATAATT
9204706 ATATATAATT
1 ATATATAATT
*
9204716 ATA-ATAAAT
1 ATATATAATT
9204725 AT-TAATAATT
1 ATAT-ATAATT
9204735 A
1 A
9204736 AGTTATTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
7 4 0.09
8 4 0.09
9 17 0.38
10 20 0.44
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATAATT
Found at i:9204716 original size:35 final size:34
Alignment explanation
Indices: 9204662--9204775 Score: 99
Period size: 35 Copynumber: 3.3 Consensus size: 34
9204652 TTTTATTTGG
* * *
9204662 ATATAGTTCATATAAAATTATAATAATTATTAAATA
1 ATATAATT-ATATATAATTATAATAAATATT-AATA
9204698 ATATAATTATATATAATTATAATAAATATTAATA
1 ATATAATTATATATAATTATAATAAATATTAATA
* **
9204732 AT-TAAGT-TAT-TAATTATGTTAATATAATTAATA
1 ATATAATTATATATAATTATAATAA-AT-ATTAATA
*
9204765 CAAATAATTAT
1 -ATATAATTAT
9204776 TAATATTGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
31 10 0.15
32 5 0.08
33 11 0.17
34 7 0.11
35 24 0.37
36 8 0.12
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (34 bp):
ATATAATTATATATAATTATAATAAATATTAATA
Found at i:9204722 original size:19 final size:18
Alignment explanation
Indices: 9204677--9204735 Score: 68
Period size: 19 Copynumber: 3.3 Consensus size: 18
9204667 GTTCATATAA
9204677 AATTATAATAATTATTA-
1 AATTATAATAATTATTAT
*
9204694 AATAAT-ATAATTATATAT
1 AATTATAATAATTAT-TAT
*
9204712 AATTATAATAAATATTAAT
1 AATTATAATAATTATT-AT
9204731 AATTA
1 AATTA
9204736 AGTTATTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 8 0.23
17 7 0.20
18 6 0.17
19 14 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTATAATAATTATTAT
Found at i:9205052 original size:27 final size:27
Alignment explanation
Indices: 9204996--9205053 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
9204986 ATTAAATTTA
*
9204996 AATTTATAAATAATAAAATAATTTATT
1 AATTTATAAATAATAAAATAATTTACT
* * *
9205023 AATTTATTAAT-ATACAATTATTTAACT
1 AATTTATAAATAATAAAATAATTT-ACT
9205050 AATT
1 AATT
9205054 GAAATTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (27 bp):
AATTTATAAATAATAAAATAATTTACT
Found at i:9205292 original size:16 final size:16
Alignment explanation
Indices: 9205265--9205313 Score: 89
Period size: 16 Copynumber: 3.0 Consensus size: 16
9205255 TTAGAAACAA
9205265 TTATTAAATAATTATTG
1 TTATT-AATAATTATTG
9205282 TTATTAATAATTATTG
1 TTATTAATAATTATTG
9205298 TTATTAATAATTATTG
1 TTATTAATAATTATTG
9205314 ACTTTTAGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 27 0.84
17 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (16 bp):
TTATTAATAATTATTG
Found at i:9205830 original size:28 final size:28
Alignment explanation
Indices: 9205798--9205857 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
9205788 GTTATAAAAT
*
9205798 AATTGTTTCTGTTCACACAAGCTTATTC
1 AATTGTTTCTATTCACACAAGCTTATTC
9205826 AATTGTTTCTATTCACACAAGCTTATTC
1 AATTGTTTCTATTCACACAAGCTTATTC
9205854 AATT
1 AATT
9205858 TAATAAGAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.43
Consensus pattern (28 bp):
AATTGTTTCTATTCACACAAGCTTATTC
Found at i:9206131 original size:23 final size:23
Alignment explanation
Indices: 9206096--9206142 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
9206086 ATTAAACTAT
* *
9206096 TATAACATTATTAATATGTAAAA
1 TATAAAATAATTAATATGTAAAA
* *
9206119 TATAAAATAATTATTATGTTAAA
1 TATAAAATAATTAATATGTAAAA
9206142 T
1 T
9206143 CTGTTTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (23 bp):
TATAAAATAATTAATATGTAAAA
Found at i:9206590 original size:16 final size:16
Alignment explanation
Indices: 9206569--9206599 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9206559 TTAATATGAA
9206569 AATTATCTTGTTATTT
1 AATTATCTTGTTATTT
*
9206585 AATTATTTTGTTATT
1 AATTATCTTGTTATT
9206600 ATAACATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (16 bp):
AATTATCTTGTTATTT
Found at i:9207537 original size:19 final size:19
Alignment explanation
Indices: 9207513--9207576 Score: 110
Period size: 19 Copynumber: 3.4 Consensus size: 19
9207503 TTATGACATT
*
9207513 TTGTTTTATCACAAAACAA
1 TTGTTTCATCACAAAACAA
9207532 TTGTTTCATCACAAAACAA
1 TTGTTTCATCACAAAACAA
*
9207551 ATGTTTCATCACAAAACAA
1 TTGTTTCATCACAAAACAA
9207570 TTGTTTC
1 TTGTTTC
9207577 TGTCTATACT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.36
Consensus pattern (19 bp):
TTGTTTCATCACAAAACAA
Found at i:9207708 original size:16 final size:17
Alignment explanation
Indices: 9207678--9207710 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9207668 AACAACTACA
9207678 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
9207696 AATAATTAT-CTATTT
1 AATAATTATACTATTT
9207711 CTAATCGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:9209470 original size:17 final size:15
Alignment explanation
Indices: 9209434--9209462 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9209424 TAAGGTAACT
9209434 TATCACCAAAACCAA
1 TATCACCAAAACCAA
9209449 TATCACCAAAACCA
1 TATCACCAAAACCA
9209463 TAATATCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.34, G:0.00, T:0.14
Consensus pattern (15 bp):
TATCACCAAAACCAA
Found at i:9209623 original size:15 final size:15
Alignment explanation
Indices: 9209603--9209632 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9209593 AAACACACAT
*
9209603 CAATGTCACATGCCA
1 CAATGTCACAAGCCA
9209618 CAATGTCACAAGCCA
1 CAATGTCACAAGCCA
9209633 TATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.33, G:0.13, T:0.17
Consensus pattern (15 bp):
CAATGTCACAAGCCA
Found at i:9209801 original size:18 final size:18
Alignment explanation
Indices: 9209780--9209814 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9209770 GAGATGGAGA
* *
9209780 ATGAGGAGATTGATGAGG
1 ATGAAGAGAGTGATGAGG
9209798 ATGAAGAGAGTGATGAG
1 ATGAAGAGAGTGATGAG
9209815 AAGGCTGCCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (18 bp):
ATGAAGAGAGTGATGAGG
Found at i:9215886 original size:23 final size:22
Alignment explanation
Indices: 9215851--9215894 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
9215841 TTTAAAATTT
9215851 AAATTATTAATAT-TAATAATAG
1 AAATTATTAATATGTAA-AATAG
*
9215873 AAATATATTGATATGTAAAATA
1 AAAT-TATTAATATGTAAAATA
9215895 TTAATAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 12 0.63
24 3 0.16
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (22 bp):
AAATTATTAATATGTAAAATAG
Found at i:9216339 original size:27 final size:27
Alignment explanation
Indices: 9216317--9216375 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
9216307 TTTAATTGTT
*
9216317 ATAAATTGGTATTAAATTATAATATTTA
1 ATAAATTGGT-TTAAATAATAATATTTA
* *
9216345 ATTAATTGGTTTAAATAATAATAATTA
1 ATAAATTGGTTTAAATAATAATATTTA
9216372 ATAA
1 ATAA
9216376 GTTTTGTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (27 bp):
ATAAATTGGTTTAAATAATAATATTTA
Found at i:9216796 original size:20 final size:20
Alignment explanation
Indices: 9216747--9216797 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
9216737 TTATCATTAA
9216747 TAATAATTATTTAACTATAT
1 TAATAATTATTTAACTATAT
* *
9216767 TATTATTTATTATAA-TA-ATT
1 TAATAATTATT-TAACTATA-T
9216787 TAATAATTATT
1 TAATAATTATT
9216798 GAAATATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATAATTATTTAACTATAT
Found at i:9216927 original size:29 final size:27
Alignment explanation
Indices: 9216895--9216960 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 27
9216885 AGTAACTAAC
*
9216895 ATTATAATATTATATTTATAATAATTAAT
1 ATTATAATATT-TATTAAT-ATAATTAAT
* *
9216924 ATTA-ATTAATTATTAATATAATTAAT
1 ATTATAATATTTATTAATATAATTAAT
*
9216950 A-TATGATATTT
1 ATTATAATATTT
9216961 GAATTACTCT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
25 2 0.07
26 14 0.47
27 6 0.20
28 4 0.13
29 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (27 bp):
ATTATAATATTTATTAATATAATTAAT
Found at i:9216933 original size:17 final size:16
Alignment explanation
Indices: 9216913--9216950 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
9216903 ATTATATTTA
9216913 TAATAATTAATATTAAT
1 TAATAATTAATA-TAAT
*
9216930 TAATTATTAATATAAT
1 TAATAATTAATATAAT
9216946 TAATA
1 TAATA
9216951 TATGATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATAATTAATATAAT
Found at i:9216940 original size:21 final size:22
Alignment explanation
Indices: 9216897--9216945 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
9216887 TAACTAACAT
*
9216897 TATAATATTATATTTATAATAA
1 TATAATATTATATTAATAATAA
*
9216919 T-TAATATTA-ATTAATTATTAA
1 TATAATATTATATTAA-TAATAA
9216940 TATAAT
1 TATAAT
9216946 TAATATATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.17
21 14 0.61
22 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TATAATATTATATTAATAATAA
Found at i:9217279 original size:17 final size:17
Alignment explanation
Indices: 9217230--9217276 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
9217220 ATTTAATCAA
* *
9217230 TATATTAAATTAAATTT
1 TATATTTAATTAATTTT
*
9217247 TATATTTTATTAATTTT
1 TATATTTAATTAATTTT
9217264 TCATATTTAATTA
1 T-ATATTTAATTA
9217277 TTTAATTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TATATTTAATTAATTTT
Found at i:9217346 original size:25 final size:24
Alignment explanation
Indices: 9217318--9217402 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 24
9217308 AATATTAAAT
9217318 AATAAATTAATTCTATAAT-TAATCA
1 AATAAATTAATT-TATAATATAAT-A
* *
9217343 AATAATTTAATTTATTATATAATA
1 AATAAATTAATTTATAATATAATA
* * *
9217367 ATTAAATTATTTATGATAATTTAAT-
1 AATAAATTAATT-T-ATAATATAATA
9217392 AATAAA-TAATT
1 AATAAATTAATT
9217403 ATTATTTTTA
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
24 19 0.40
25 21 0.44
26 8 0.17
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (24 bp):
AATAAATTAATTTATAATATAATA
Found at i:9217368 original size:28 final size:29
Alignment explanation
Indices: 9217314--9217379 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
9217304 CATTAATATT
* *
9217314 AAATAA-TAAATTAATTCTATAATTAATC
1 AAATAATTTAATTAATTATATAATTAATC
* *
9217342 AAATAATTTAATTTATTATATAA-TAATT
1 AAATAATTTAATTAATTATATAATTAATC
*
9217370 AAATTATTTA
1 AAATAATTTA
9217380 TGATAATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 19 0.59
29 13 0.41
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (29 bp):
AAATAATTTAATTAATTATATAATTAATC
Found at i:9217413 original size:33 final size:34
Alignment explanation
Indices: 9217350--9217430 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
9217340 TCAAATAATT
*
9217350 TAATTTATTATATAATAATTAAATTATTTA-TGA-
1 TAATTTATAATA-AATAATTAAATTATTTATTGAG
* *
9217383 TAATTTAATAATAAATAATTATTATT-TTTATTTAG
1 TAATTT-ATAATAAATAATTA-AATTATTTATTGAG
9217418 TAATTTATAATAA
1 TAATTTATAATAA
9217431 TTATATAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
33 18 0.44
34 17 0.41
35 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (34 bp):
TAATTTATAATAAATAATTAAATTATTTATTGAG
Found at i:9218016 original size:21 final size:20
Alignment explanation
Indices: 9217889--9218019 Score: 79
Period size: 22 Copynumber: 6.2 Consensus size: 20
9217879 TTATTTGATA
*
9217889 ATTTATATATATTATA-ATT
1 ATTTATATATATAATATATT
* * *
9217908 A-TTATAT-TATTATAAACT
1 ATTTATATATATAATATATT
*
9217926 AATTATATATTACTAATATATT
1 ATTTATATA-TA-TAATATATT
*
9217948 ATTCATATAAATATAAATATAATT
1 ATT--TATATATAT-AATAT-ATT
* * *
9217972 ATTGTTTATATTTAATACATTT
1 ATT-TATATATATAATATA-TT
9217994 ATTTATATATATAATTATATT
1 ATTTATATATATAA-TATATT
9218015 ATTTA
1 ATTTA
9218020 ATAATTATTT
Statistics
Matches: 87, Mismatches: 14, Indels: 20
0.72 0.12 0.17
Matches are distributed among these distances:
17 7 0.08
18 9 0.10
19 7 0.08
21 19 0.22
22 21 0.24
23 13 0.15
24 11 0.13
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.53
Consensus pattern (20 bp):
ATTTATATATATAATATATT
Found at i:9218018 original size:34 final size:29
Alignment explanation
Indices: 9217980--9218046 Score: 89
Period size: 29 Copynumber: 2.1 Consensus size: 29
9217970 TTATTGTTTA
9217980 TATTTAATACATTTATTTATATATATAATTATAT
1 TATTTAATA-A-TTATTT-TA-ATA-AATTATAT
9218014 TATTTAATAATTATTTTAATAAATTATAT
1 TATTTAATAATTATTTTAATAAATTATAT
9218043 TATT
1 TATT
9218047 ATATTTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
29 12 0.36
30 3 0.09
31 2 0.06
32 6 0.18
33 1 0.03
34 9 0.27
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (29 bp):
TATTTAATAATTATTTTAATAAATTATAT
Found at i:9218052 original size:34 final size:34
Alignment explanation
Indices: 9217959--9218052 Score: 79
Period size: 34 Copynumber: 2.6 Consensus size: 34
9217949 TTCATATAAA
9217959 TATAAATATAATTATTGTTTATATTTAATACATTTATT
1 TATAAATATAATTA----TTATATTTAATACATTTATT
*
9217997 TATATATATAATTA-TATTATTTAATA-A-TTATTT
1 TATAAATATAATTATTA-TATTTAATACATTTA-TT
9218030 TAATAAAT-TATATTATTATATTT
1 T-ATAAATATA-ATTATTATATTT
9218053 TAGAAATTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
32 3 0.06
33 8 0.16
34 23 0.47
35 2 0.04
38 13 0.27
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (34 bp):
TATAAATATAATTATTATATTTAATACATTTATT
Found at i:9218068 original size:22 final size:21
Alignment explanation
Indices: 9218017--9218071 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
9218007 ATTATATTAT
*
9218017 TTAATA-ATTATTTTAATAAA
1 TTAATATATTATTTTAAGAAA
*
9218037 TT-ATATTATTATATTTTAGAAA
1 TTAATA-TATTAT-TTTAAGAAA
9218059 TTAATATATTATT
1 TTAATATATTATT
9218072 ATATATTCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 3 0.10
20 2 0.07
21 6 0.21
22 15 0.52
23 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAATATATTATTTTAAGAAA
Found at i:9218864 original size:176 final size:174
Alignment explanation
Indices: 9218120--9218997 Score: 722
Period size: 181 Copynumber: 4.9 Consensus size: 174
9218110 CTTATATTTT
* * * ** *
9218120 ATTTATTAATATTTCAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTTTTAAACATGT
1 ATTTATTAATATTTCAAAAATTAATAAG---AGATTTAAAAAATAAATCTATTTACTAAACAAGT
* * * * *
9218185 TCAAATAGATCTGACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTGAT
63 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATA-TTATGATC-TTTGTTTTGTCAT
* * * * *
9218250 GAACCAATTGTTTCTGTCTATAAAAGCTTATTCAAAATAAAATAATAGTA
126 AAAACAATTGTTTCTTTC-ATACAAGCTTATTCAAAATAAAATAATACTA
* * * * ** **
9218300 ATTTAATAATATTCCAACAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACCGAGTAAG
1 ATTTATTAATATTTCAAAAATTAATAAG----AGATTTAAAAAATAAATCTATTTACTAAACAAG
* * * * * * * *
9218365 TTCAAATAGCTATAACTGTTTGAACAGTTTTTTATTTCTAATAGTTATGATTTTTTGTTTTGTCA
62 TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATA-TTATGA-TCTTTGTTTTGTCA
* * *
9218430 TAAAATAATTGTTTCTATTCATTCAAGTTTATTCAAAATAAAATAATACTA
125 TAAAACAATTGTTTCT-TTCATACAAGCTTATTCAAAATAAAATAATACTA
* *** * *
9218481 CTTTATTAATATTTTGTAAATTAATAGGTAGGAGATTTAAAAAATAAATCTCTTTA-TCGAACAA
1 ATTTATTAATATTTCAAAAATTAATA---A-GAGATTTAAAAAATAAATCTATTTACT-AAACAA
* * * * * * * *
9218545 TTTCAAATAATTATGTCCATTAGAACAATTATATATTTCAAATTGTTATGACCTTCTGTTTTGTC
61 GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA-TATTATGATCTT-TGTTTTGTC
* * * ** *
9218610 ATAAAAAAAATGTTTCTATTCATACATA-ATTATTCAAAATAAAATAATTTTG
124 ATAAAACAATTGTTTCT-TTCATACA-AGCTTATTCAAAATAAAATAATACTA
** * *
9218662 ATTTATTAATATTTTGAAAATTAATAAGAGATTTAAAAACTAAATCTATTTACTAAACCAGTTCA
1 ATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACTAAACAAGTTCA
* * * *
9218727 AATAGTTATGACTATTTGAACAATTATCTATCTCAAATCATAATGATCTTTATTTTGTCATACAA
66 AATAGTTATGACTATTTGAACAATTATCTATTTCAAAT-ATTATGATCTTTGTTTTGTCATAAAA
** * *
9218792 CAATTGTTTCCTTTCATACAAGCTTATTCGGATTAAAATGATACTA
130 CAATTGTTT-CTTTCATACAAGCTTATTCAAAATAAAATAATACTA
* ** *
9218838 ATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAA--TATGTTAGAATAACTAGTT
1 ATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTAT-TTACTA-AACAAGTT
* ** * * *
9218901 CAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATT-TTATTCTTTTTGTTTAGTCA
64 CAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT-ATTATGA-TC--TTTGTTTTGTCA
* * *
9218965 TAAAATAATTATTTCAGTTCATACAAGCTTATT
125 TAAAACAATTGTTTC-TTTCATACAAGCTTATT
9218998 TGGAATAAAA
Statistics
Matches: 561, Mismatches: 116, Indels: 44
0.78 0.16 0.06
Matches are distributed among these distances:
174 3 0.01
175 7 0.01
176 132 0.24
177 73 0.13
178 39 0.07
180 26 0.05
181 275 0.49
182 4 0.01
184 1 0.00
185 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (174 bp):
ATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATCTATTTACTAAACAAGTTCA
AATAGTTATGACTATTTGAACAATTATCTATTTCAAATATTATGATCTTTGTTTTGTCATAAAAC
AATTGTTTCTTTCATACAAGCTTATTCAAAATAAAATAATACTA
Found at i:9219136 original size:23 final size:22
Alignment explanation
Indices: 9219093--9219140 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
9219083 TTTTAGGAAT
*
9219093 AATAATAATATATAATCTATTA
1 AATAATAATAAATAATCTATTA
*
9219115 AATAATAATTAAATAATTTATTA
1 AATAATAA-TAAATAATCTATTA
9219138 AAT
1 AAT
9219141 TTAATACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATAATAATAAATAATCTATTA
Found at i:9219190 original size:33 final size:38
Alignment explanation
Indices: 9219105--9219180 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 38
9219095 TAATAATATA
9219105 TAAT-CTATTAAA-TAATAATTAAATAATTTATTAAATT
1 TAATACTA-TAAATTAATAATTAAATAATTTATTAAATT
* *
9219142 TAATACTATAAATTAATAA-TATATTATTTATT-AATT
1 TAATACTATAAATTAATAATTAAATAATTTATTAAATT
9219178 TAA
1 TAA
9219181 CATAAATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 7 0.20
37 19 0.54
38 9 0.26
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (38 bp):
TAATACTATAAATTAATAATTAAATAATTTATTAAATT
Found at i:9219204 original size:33 final size:38
Alignment explanation
Indices: 9219128--9219204 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 38
9219118 AATAATTAAA
*
9219128 TAATTTATTAAATTTAATACTATAAATTAATAATATAT
1 TAATTTATTAAATTTAATACTATAAATTAATAAAATAT
*
9219166 T-ATTTATT-AATTT-A-AC-ATAAATTAA-AAAATTT
1 TAATTTATTAAATTTAATACTATAAATTAATAAAATAT
9219198 TAATTTA
1 TAATTTA
9219205 ATTGTAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
32 6 0.17
33 14 0.39
34 2 0.06
35 1 0.03
36 5 0.14
37 7 0.19
38 1 0.03
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (38 bp):
TAATTTATTAAATTTAATACTATAAATTAATAAAATAT
Found at i:9219314 original size:15 final size:16
Alignment explanation
Indices: 9219284--9219324 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
9219274 ATTAATTTTA
9219284 ATATTTAATATTAAAT
1 ATATTTAATATTAAAT
*
9219300 ATATTTTAT-TTAAAT
1 ATATTTAATATTAAAT
*
9219315 ATATATAATA
1 ATATTTAATA
9219325 GAAACTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTTAATATTAAAT
Found at i:9219465 original size:15 final size:15
Alignment explanation
Indices: 9219447--9219484 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
9219437 TTTATTTTAT
9219447 ATATATTTAAATAAA
1 ATATATTTAAATAAA
* *
9219462 ATATTTTTAATTAAA
1 ATATATTTAAATAAA
9219477 ATA-ATTTA
1 ATATATTTA
9219485 TTTTAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATTTAAATAAA
Found at i:9220483 original size:18 final size:17
Alignment explanation
Indices: 9220459--9220503 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
9220449 TAAACTTTAA
9220459 TTATAATTATACATAAT
1 TTATAATTATACATAAT
*
9220476 TATATAATT-TATATAAT
1 T-TATAATTATACATAAT
9220493 TTATATATTAT
1 TTATA-ATTAT
9220504 TAATAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 4 0.17
17 12 0.50
18 8 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATAATTATACATAAT
Found at i:9220503 original size:7 final size:9
Alignment explanation
Indices: 9220460--9220499 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
9220450 AAACTTTAAT
9220460 TATAATTATA
1 TATAATT-TA
*
9220470 CATAA-TTA
1 TATAATTTA
9220478 TATAATTTA
1 TATAATTTA
9220487 TATAATTTA
1 TATAATTTA
9220496 TATA
1 TATA
9220500 TTATTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 6 0.22
9 17 0.63
10 4 0.15
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (9 bp):
TATAATTTA
Found at i:9220509 original size:18 final size:18
Alignment explanation
Indices: 9220456--9220509 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
9220446 ACCTAAACTT
9220456 TAATTATA-ATTA-TACA
1 TAATTATATATTATTACA
* *
9220472 TAATTATATAAT-TTATA
1 TAATTATATATTATTACA
9220489 TAATTTATATATTATTA-A
1 TAA-TTATATATTATTACA
9220507 TAA
1 TAA
9220510 ATTAAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 8 0.26
17 8 0.26
18 12 0.39
19 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTATATATTATTACA
Found at i:9221296 original size:21 final size:22
Alignment explanation
Indices: 9221271--9221320 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
9221261 TTCATTTATG
9221271 ATTTAATTAATAAT-TTTATA-A
1 ATTTAA-TAATAATATTTATATA
*
9221292 ATTTAATAATTATATTTATATA
1 ATTTAATAATAATATTTATATA
9221314 A-TTAATA
1 ATTTAATA
9221321 TTTAATATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 6 0.23
21 18 0.69
22 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTAATAATAATATTTATATA
Found at i:9221314 original size:14 final size:14
Alignment explanation
Indices: 9221292--9221327 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
9221282 AATTTTATAA
9221292 ATTTAATAATT-AT
1 ATTTAATAATTAAT
9221305 ATTTATATAATTAAT
1 ATTTA-ATAATTAAT
9221320 ATTTAATA
1 ATTTAATA
9221328 TGAATAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 9 0.43
15 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTTAATAATTAAT
Found at i:9221665 original size:13 final size:14
Alignment explanation
Indices: 9221634--9221666 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9221624 TAATATACTA
*
9221634 TTAATAATAACATT
1 TTAATTATAACATT
9221648 TTAATTATAACA-T
1 TTAATTATAACATT
9221661 TTAATT
1 TTAATT
9221667 GTATTCTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
TTAATTATAACATT
Found at i:9221778 original size:25 final size:22
Alignment explanation
Indices: 9221720--9221778 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 22
9221710 TTAGTACTTA
9221720 TTAATTA-AATAAATTAATTTT
1 TTAATTATAATAAATTAATTTT
*
9221741 TTCAATTATTAATATAATTTATTGTT
1 TT-AATTA-TAATA-AATTAATT-TT
9221767 TATAATTATAAT
1 T-TAATTATAAT
9221779 TTAAAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
21 2 0.06
22 5 0.16
24 4 0.13
25 11 0.35
26 8 0.26
27 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TTAATTATAATAAATTAATTTT
Found at i:9221893 original size:15 final size:13
Alignment explanation
Indices: 9221863--9221909 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
9221853 TTTATTTTAA
*
9221863 TAATTATAAAAAT
1 TAATCATAAAAAT
9221876 TAATCAGTAAATAAT
1 TAATCA-TAAA-AAT
9221891 TAAATC-TAAAAAT
1 T-AATCATAAAAAT
9221904 TAATCA
1 TAATCA
9221910 AAATTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
12 4 0.14
13 9 0.31
14 8 0.28
15 4 0.14
16 4 0.14
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.34
Consensus pattern (13 bp):
TAATCATAAAAAT
Found at i:9222345 original size:22 final size:22
Alignment explanation
Indices: 9222320--9222361 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
9222310 TTTAAATTAT
* *
9222320 TATTTAATAATTATTATAATAA
1 TATTAAATAATAATTATAATAA
9222342 TATTAAATAATAATTATAAT
1 TATTAAATAATAATTATAAT
9222362 TATAATATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTAAATAATAATTATAATAA
Found at i:9222345 original size:25 final size:25
Alignment explanation
Indices: 9222317--9222373 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
9222307 TATTTTAAAT
*
9222317 TATTATTTAATAATTATTATAATAA
1 TATTATTTAATAATTATAATAATAA
** *
9222342 TATTAAATAATAATTATAATTATAA
1 TATTATTTAATAATTATAATAATAA
9222367 TATTATT
1 TATTATT
9222374 ATTATAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTATTTAATAATTATAATAATAA
Found at i:9222364 original size:31 final size:31
Alignment explanation
Indices: 9222326--9222386 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
9222316 TTATTATTTA
*
9222326 ATAATTATTATAATAATATTA-AATAATAATT
1 ATAATTATAATAATAATATTATAA-AATAATT
* *
9222357 ATAATTATAATATTATTATTATAAAATAAT
1 ATAATTATAATAATAATATTATAAAATAAT
9222387 ATTAAATCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (31 bp):
ATAATTATAATAATAATATTATAAAATAATT
Found at i:9222385 original size:25 final size:26
Alignment explanation
Indices: 9222315--9222386 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 26
9222305 CGTATTTTAA
*
9222315 ATTATTATT-TAATAATTATTATAAT
1 ATTATTATTATAATAATAATTATAAT
* * *
9222340 AATATTAAATAATAATTATAATTATAAT
1 ATTATT--ATTATAATAATAATTATAAT
9222368 ATTATTATTATAA-AATAAT
1 ATTATTATTATAATAATAAT
9222387 ATTAAATCTA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
25 10 0.27
26 6 0.16
27 2 0.05
28 19 0.51
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
ATTATTATTATAATAATAATTATAAT
Found at i:9223066 original size:181 final size:177
Alignment explanation
Indices: 9222791--9223249 Score: 502
Period size: 181 Copynumber: 2.5 Consensus size: 177
9222781 TAATTAATTA
* * * *
9222791 AAATAGTCATAACTATTTTGAACTGGTT-TAGTAAATAGATTTAGTTTTTAAATCTCT--TATTA
1 AAATAGACATAACTA-TTTGAACTTGTTCGA-TAAATAGATTTATTTTTTAAATCTCTACTATTA
* ** *
9222853 ATTTTTAAAATATTAATAAATCAAAATTATTTTATTTTGAAT-AATTCTGTATGAACAAAAACAA
64 A-TTTGAAAATATTAATAAAT-AGTATTATTTTATTTTGAATGAACT-TGTATGAACAAAAACAA
* * *
9222917 TTGTTTTATGACAAAACAAAAGGCCATAA-TAATTTGAAATAGATAATTGTTCT
126 TTGTTTTATGACAAAACAAAAGGCCATAACT-ATTAGAAATAAAAAATTGTT-T
* *
9222970 -AATGGACATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTTAAATCTCCTACCTATTA
1 AAATAGACATAACTATTTGAACTTGTTCGATAAATAGATTTATTTTTTAAATCT-CTA-CTATTA
* *
9223034 ATTTGAAAAATATTAATAAAGTAGTATTATTTTATTTTGAATGAACTTGTATGAATAGAAACAAT
64 ATTTG-AAAATATTAATAAA-TAGTATTATTTTATTTTGAATGAACTTGTATGAACAAAAACAAT
*
9223099 TGTTTTATGACAAAACAAAAGGTCATAACTATTAGAAATAAAAAATTGTTT
127 TGTTTTATGACAAAACAAAAGGCCATAACTATTAGAAATAAAAAATTGTTT
** * ** *
9223150 AAATAGTTA-AACTATTTGAGCTTACTCGATAAATAGATTTATTTTTTAAATCTTTTACTTATTA
1 AAATAGACATAACTATTTGAACTTGTTCGATAAATAGATTTATTTTTTAAATC-TCTAC-TATTA
* *
9223214 ATTGTTG-GAATATTATTAAATTAGTATTATTTTATT
64 A-T-TTGAAAATATTAATAAA-TAGTATTATTTTATT
9223250 ATATTTAGTA
Statistics
Matches: 239, Mismatches: 27, Indels: 27
0.82 0.09 0.09
Matches are distributed among these distances:
177 33 0.14
178 15 0.06
179 1 0.00
180 77 0.32
181 105 0.44
182 8 0.03
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (177 bp):
AAATAGACATAACTATTTGAACTTGTTCGATAAATAGATTTATTTTTTAAATCTCTACTATTAAT
TTGAAAATATTAATAAATAGTATTATTTTATTTTGAATGAACTTGTATGAACAAAAACAATTGTT
TTATGACAAAACAAAAGGCCATAACTATTAGAAATAAAAAATTGTTT
Found at i:9223692 original size:14 final size:14
Alignment explanation
Indices: 9223673--9223702 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9223663 GACTATTTCA
*
9223673 ATTAATAAATATTT
1 ATTAATAAATAATT
9223687 ATTAATAAATAATT
1 ATTAATAAATAATT
9223701 AT
1 AT
9223703 CTATTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTAATAAATAATT
Found at i:9223752 original size:24 final size:22
Alignment explanation
Indices: 9223695--9223752 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 22
9223685 TTATTAATAA
*
9223695 ATAATTATCTATTTTAAATCATT
1 ATAATT-TATATTTTAAATCATT
9223718 ATTAATATTATATTTTAAATCATATT
1 A-TAAT-TTATATTTTAAATC--ATT
9223744 ATAATTTAT
1 ATAATTTAT
9223753 GATACTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 1 0.03
24 20 0.67
25 5 0.17
26 4 0.13
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATTTATATTTTAAATCATT
Found at i:9224013 original size:14 final size:14
Alignment explanation
Indices: 9223994--9224032 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
9223984 AAATATTAAT
*
9223994 TTATTAGTAATTTA
1 TTATTAATAATTTA
9224008 TTATTAATAAATTTA
1 TTATTAAT-AATTTA
9224023 -TATTAATAAT
1 TTATTAATAAT
9224033 ATCCTTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 3 0.13
14 14 0.61
15 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (14 bp):
TTATTAATAATTTA
Found at i:9224558 original size:165 final size:165
Alignment explanation
Indices: 9224370--9224669 Score: 397
Period size: 165 Copynumber: 1.8 Consensus size: 165
9224360 ATAAATATTT
* * * * **
9224370 TTAAATCTCTTTCATATTAATTTTTCAAATGTTAATAAATTAGTATTAATTTATTCTGAATAAGC
1 TTAAATCTCTTACATATTAATTTTTAAAATATTAATAAATTAGTATTAATTTAATCCAAATAAGC
** * * *
9224435 TTGTATGAACTGAAATAATTGTTTTATGACT-AAA-CAAAAGATTAAAATGATATGAAATAGATA
66 TTGTACAAAC-AAAACAATTGTTTTATG-CTAAAAGAAAAAGATTAAAATGATATGAAATAGATA
*
9224498 ATTATTCTAATAATTTTAACCATTTGAATTGATTTAG
129 ATCATTCTAATAATTTTAACCATTTGAATTGATTTAG
* * *
9224535 TTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAGTATTATTTTAATCCAAATAAGC
1 TTAAATCTCTTACATATTAATTTTTAAAATATTAATAAATTAGTATTAATTTAATCCAAATAAGC
* * * *
9224600 TTGTACAAACAAAACAATTGTTTTATGTTAAAAGAAAAAGGTTATAATGATTTGAAATAGATAAT
66 TTGTACAAACAAAACAATTGTTTTATGCTAAAAGAAAAAGATTAAAATGATATGAAATAGATAAT
9224665 CATTC
131 CATTC
9224670 ATAGAGTCTT
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
163 1 0.01
164 18 0.16
165 95 0.83
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (165 bp):
TTAAATCTCTTACATATTAATTTTTAAAATATTAATAAATTAGTATTAATTTAATCCAAATAAGC
TTGTACAAACAAAACAATTGTTTTATGCTAAAAGAAAAAGATTAAAATGATATGAAATAGATAAT
CATTCTAATAATTTTAACCATTTGAATTGATTTAG
Found at i:9225700 original size:181 final size:179
Alignment explanation
Indices: 9225274--9226506 Score: 938
Period size: 181 Copynumber: 6.9 Consensus size: 179
9225264 TTAATTTAGT
* * * * * * *
9225274 ACGATTTGAAATAAAAAAATGTTCAAATTGTTATAACTAATTGAACT-AGTAT-GGTAAATAGAT
1 ACGA-TTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGA-T-TCGATAAATAGAT
* * * *
9225337 TTATTTATTAAATCTCTTA-TTAATT--TTTGA-AATATTAATAAATTATTATTATTTTATTTCG
63 TTATTTTTTAAATCTCTTACTT-ATTAATTTTATAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * *
9225398 AACAAACTTATATGAACAAAAAC-ATTTATTTTATGACAAAACAAAAAGGTCATA
127 AATAAGCTTGTATGAAGATAAACAATTGA-TTTATGACAAAAC-AAAAGGTCATA
* * * * * * * * *
9225452 ACAATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATTGGTTCGATAAACAAATTT
1 ACGA-TTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTT
* * * * * **
9225517 ATTTTTTAAATCTATTAGTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTTGAA
65 ATTTTTTAAATCTCTTACTTATT-AATTTTATAATATTAATAAATTAGTATTATTTTATTTCAAA
* * * *
9225582 TAAGCTTGTATGAAGATAAATAATTGATTTATGACTAAATAAAAGGTTATA
129 TAAGCTTGTATGAAGATAAACAATTGATTTATGACAAAACAAAAGGTCATA
* *
9225633 ATGATTGCAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTT
1 ACGATTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTT
*
9225698 ATTTTTTAAATCTCCTACTTATTAATTTT-TCAAATATTAATAAATTAGTATTATTTTA-TTCTA
65 ATTTTTTAAATCTCTTACTTATTAATTTTAT--AATATTAATAAATTAGTATTATTTTATTTC-A
* * * * *
9225761 AATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATA
127 AATAAGCTTGTATGAAGATAAACAATTGATTTATGACAAAACAAAAGGTCATA
* * * * *
9225814 ATGATTTGATATAGATAATTGTTTAAAT-GGCTATAATTATTTGAACTGATTCGATAAACT-GAT
1 ACGA-TTGAAATAGATAATTGTTCAAATAGTC-ATAACTATTTGAACTGATTCGATAAA-TAGAT
* * * * *
9225877 TTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTTCA
63 TTATTTTTTAAATCTCTTACTTATTAA-TTTTATAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * * *
9225942 AATAAGCTTTTATGAA-CTGAAACAATTGTTTTATGATAAAATATAAGATCATA
127 AATAAGCTTGTATGAAGAT-AAACAATTGATTTATGACAAAACAAAAGGTCATA
* * * * *
9225995 ACGATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTG-TTCGGTAAATAGGTT
1 ACGA-TTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTCGATAAATAGATT
* * * * *
9226059 T-TTTTTCT-ACTTTCTTAATTAATAATTTTATAAATGTTAATAAATTAGTATTATTTTATTTCA
64 TATTTTT-TAAATCTCTTACTTATTAATTTTAT-AATATTAATAAATTAGTATTATTTTATTTCA
* * * * * *
9226122 AATAAACATGTATG-AGTTGAAGCAATT-ATTTTATGACTAAACAAAAGGTCAAA
127 AATAAGCTTGTATGAAGAT-AAACAATTGA-TTTATGACAAAACAAAAGGTCATA
* * * * * *
9226175 ACGATTTAAAATA-ATAATTGTTCTAATAGTCTTAACTATTTGAACTGATTC-AGCAAACACATT
1 ACGA-TTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGA-TAAATAGA-T
* * * * * *
9226238 TTATTTTTTTAAATC-CTTACTTATTAATGTTTAGAATATTATTAATTTAGCAATATTTTA-CTC
63 TTA-TTTTTTAAATCTCTTACTTATTAAT-TTTATAATATTAATAAATTAGTATTATTTTATTTC
* * * * * * * *
9226301 TGAATAAGCTTGT-TGAATAGAAATTAAATGTTTTAGGACAAAACAAAA-ATCATA
126 -AAATAAGCTTGTATGAAGATAAA-CAATTGATTTATGACAAAACAAAAGGTCATA
* * * * * * *
9226355 ACAATTGGAGATAGAAAATTGTTCAAATAATCATAACTA-TTGCAACTGGTTCGGTAAAGAGATT
1 ACGATT-GAAATAGATAATTGTTCAAATAGTCATAACTATTTG-AACTGATTCGATAAATAGATT
* * * * * *
9226419 TAGTTTTTAAATCTCTTA-TTA--ATTTTTAAAATAGTAATAAAATAGTATTATTTTA-TTCTGA
64 TATTTTTTAAATCTCTTACTTATTAATTTTATAATATTAATAAATTAGTATTATTTTATTTC-AA
** * *
9226480 ATAATTTTGTATGAATAGAAACAATTG
128 ATAAGCTTGTATGAAGATAAACAATTG
9226507 GTTTTAGAGC
Statistics
Matches: 839, Mismatches: 173, Indels: 88
0.76 0.16 0.08
Matches are distributed among these distances:
176 41 0.05
177 13 0.02
178 66 0.08
179 60 0.07
180 137 0.16
181 436 0.52
182 81 0.10
183 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (179 bp):
ACGATTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTTA
TTTTTTAAATCTCTTACTTATTAATTTTATAATATTAATAAATTAGTATTATTTTATTTCAAATA
AGCTTGTATGAAGATAAACAATTGATTTATGACAAAACAAAAGGTCATA
Found at i:9225977 original size:362 final size:355
Alignment explanation
Indices: 9225293--9226493 Score: 1146
Period size: 362 Copynumber: 3.3 Consensus size: 355
9225283 AATAAAAAAA
* * * *
9225293 TGTTCAAATTGTTATAACTAATTGAACT-AGTAT-GGTAAATAGATTTATTTATTAAATCTCTTA
1 TGTTCAAATAGTCATAACTATTTGAACTGA-T-TCGGTAAATAGATTTATTTTTTAAATCTCTTA
* * * **
9225356 TTAATTTTTGAAATATTAATAAATTATTATTATTTTATTTCGAACA-AACTTATATGAACAAAAA
64 TTAATTTTT-AAATATTAATAAATTAGTATTATTTTA-TTCTAA-ATAACTTGTATGATGAAAAA
* * * * *
9225420 CATTTATTTTATGACAAAACAAAAAGGTCATAACAATTTGAAATAGATAATTATTCATATAGCCT
126 CAATTATTTTATGACAAAAC-AAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATAGCCT
* * * * * *
9225485 TAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATCTATTAGTTATTAAATTTCATA
190 TAACTATTTGAACTGATTCGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTATA
* * * *
9225550 ATATTACTAGATTAGTATTATTTTATTTTGAATAAGCTTGTATGAA-GATAAATAATTGATTTAT
255 ATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATG--AAATAATTGTTTTAT
* * * *
9225614 GACTAAATAAAAGGTTATAATGATTGCAAATATATAAT
318 GACTAAATAAAAGATCATAACGATTGCAAATAGATAAT
*
9225652 TGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAATAGATTTATTTTTTAAATCTCCTACT
1 TGTTCAAATAGTCATAACTATTTGAACTGATTCGGTAAATAGATTTATTTTTTAAA--T-CT-CT
*
9225717 TATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTAAATAGGCTTGTATGATGAAAA
62 TATTAATTTTT-AAATATTAATAAATTAGTATTATTTTATTCTAAATA-ACTTGTATGATGAAAA
* * * * *
9225782 ACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGATATAGATAATTGTTTAAAT-GGCT
125 ACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATAGCCT
* ** * * *
9225846 ATAATTATTTGAACTGATTCGATAAACTGATTTATGTTTTAAATCTCTAACTTATCAATTTTTAT
190 -TAACTATTTGAACTGATTCGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTAT
* * * * *
9225911 AATATTAATAAAGTAATATTATTTTATTTCAAATAAGCTTTTATGAACTGAAACAATTGTTTTAT
254 AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TGAAATAATTGTTTTAT
* **
9225976 GA-TAAAATATAAGATCATAACGATTTTAAATAGATAAT
318 GACT-AAATAAAAGATCATAACGATTGCAAATAGATAAT
* * * * *
9226014 TGTTCAAATAGTCAAAAATATTTGAACTTG-TTCGGTAAATAGGTTT-TTTTTCT-ACTTTCTTA
1 TGTTCAAATAGTCATAACTATTTGAAC-TGATTCGGTAAATAGATTTATTTTT-TAAATCTCTT-
* *
9226076 ATTAATAATTTTATAAATGTTAATAAATTAGTATTATTTTATT-TCAAATAAACATGTATGAGTT
63 A-T--TAATTTT-TAAATATTAATAAATTAGTATTATTTTATTCT-AAAT-AACTTGTATGA--T
* * * *
9226140 G--AAGCAATTATTTTATGACTAAACAAAAGGTCAAAACGATTTAAAATA-ATAATTGTTCT-AA
120 GAAAAACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTT-TAAA
* * *
9226201 TAGTCTTAACTATTTGAACTGATTC-AGCAAACACATTTTATTTTTTTAAATC-CTTACTTATTA
184 TAGCCTTAACTATTTGAACTGATTCGA-TAAACA-AATTTA-TTTTTTAAATCTCTTACTTATTA
* * * * * * *
9226264 ATGTTTAGAATATTATTAATTTAGCAATATTTTA-CTCTGAATAAGCTTGT-TGAATAGAAATTA
246 ATTTTTATAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAAT-GAAA-TA
* * * * * * * *
9226327 AATGTTTTAGGACAAAACAAAA-ATCATAACAATTGGAGATAGAAAAT
308 ATTGTTTTATGACTAAATAAAAGATCATAACGATTGCAAATAGATAAT
* * * *
9226374 TGTTCAAATAATCATAACTA-TTGCAACTGGTTCGGTAAAGAGATTTAGTTTTTAAATCTCTTAT
1 TGTTCAAATAGTCATAACTATTTG-AACTGATTCGGTAAATAGATTTATTTTTTAAATCTCTTAT
* * * *
9226438 TAATTTTTAAAATAGTAATAAAATAGTATTATTTTATTCTGAATAATTTTGTATGA
65 TAATTTTT-AAATATTAATAAATTAGTATTATTTTATTCTAAATAA-CTTGTATGA
9226494 ATAGAAACAA
Statistics
Matches: 691, Mismatches: 112, Indels: 80
0.78 0.13 0.09
Matches are distributed among these distances:
356 3 0.00
357 46 0.07
358 4 0.01
359 57 0.08
360 102 0.15
361 178 0.26
362 226 0.33
363 74 0.11
364 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (355 bp):
TGTTCAAATAGTCATAACTATTTGAACTGATTCGGTAAATAGATTTATTTTTTAAATCTCTTATT
AATTTTTAAATATTAATAAATTAGTATTATTTTATTCTAAATAACTTGTATGATGAAAAACAATT
ATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATAGCCTTAACTA
TTTGAACTGATTCGATAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTATAATATTA
ATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATGAAATAATTGTTTTATGACTAAAT
AAAAGATCATAACGATTGCAAATAGATAAT
Found at i:9226854 original size:182 final size:181
Alignment explanation
Indices: 9226532--9227137 Score: 648
Period size: 182 Copynumber: 3.4 Consensus size: 181
9226522 TTTTTAAATA
* * *
9226532 AATTTA-TTTTTAAAAT-TTTTACTTAGTAATTT-TTGGAACATTAATAAATTTA-TATTATTTT
1 AATTTATTTTTTAAAATCTTTTACTTATTAATTTCTTGAAATATTAATAAA-TTAGTATTATTTT
* * * * * * *
9226593 ATTTGAAATAAGCTTGAATGAATAGAACCAATTGTTTTATGACAAAACAAAAGGTTGTAATGTTT
65 ATTTCAAATAAGC-TAAATGACTAGAAACAATTGTTTTATGACAAAACAAAAAGTTATAATGATT
*
9226658 TGAAATAAATAATTATTAAGATAGTAATAACTATTTGAACTTGTTCGATAAAC
129 TGAAATAAATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCGATAAAC
* * * *
9226711 ATATTTATTTTTTTAATTCTCTTACTTTTTAATTT-TTGAAATATTAATAAATTAGTATTATTTT
1 A-ATTTATTTTTTAAAATCTTTTACTTATTAATTTCTTGAAATATTAATAAATTAGTATTATTTT
* * * * *
9226775 ATTTCAAATAAGCTAACATGACTTGAAACAGTTGTTTTATTACAAAACAAAATGTTACAATGATT
65 ATTTCAAATAAGCTAA-ATGACTAGAAACAATTGTTTTATGACAAAACAAAAAGTTATAATGATT
* * * * *
9226840 TGAAGTAGATAATTATTCAA-ATAGTCATGACTATTTGAACTTGTTTGGTAAAC
129 TGAAATAAATAATTATT-AAGATAGTCATAACTATTTGAACTTGTTCGATAAAC
* * *
9226893 ---TTATTTTTTAAAAATCTTTTACTTATT-ATTTGTTGAAATATTAATAAATCAATATTATTTT
1 AATTTATTTTTT-AAAATCTTTTACTTATTAATTTCTTGAAATATTAATAAATTAGTATTATTTT
* * ** * *
9226954 AATCCAAATAAGCTCGTATGGAC-GGAAACAATTGTTTTATGACAAAACAAAAAGTCATAA-GAA
65 ATTTCAAATAAGCT-AAAT-GACTAGAAACAATTGTTTTATGACAAAACAAAAAGTTATAATG-A
* * * *
9227017 TTTGAAATAAATAATTATTTAGATAGTCATAACGATTTGAATTTGTTCGATAAAT
127 TTTGAAATAAATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCGATAAAC
* *
9227072 AGATTTATTTTTT-AAATCTTTTAATTATTAATTGTCTT--AATATTAATAAATTTGTATTATTT
1 A-ATTTATTTTTTAAAATCTTTTACTTATTAATT-TCTTGAAATATTAATAAATTAGTATTATTT
9227134 TATT
64 TATT
9227138 CGAAGTAAGC
Statistics
Matches: 354, Mismatches: 55, Indels: 34
0.80 0.12 0.08
Matches are distributed among these distances:
178 15 0.04
179 131 0.37
180 8 0.02
181 52 0.15
182 134 0.38
183 14 0.04
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (181 bp):
AATTTATTTTTTAAAATCTTTTACTTATTAATTTCTTGAAATATTAATAAATTAGTATTATTTTA
TTTCAAATAAGCTAAATGACTAGAAACAATTGTTTTATGACAAAACAAAAAGTTATAATGATTTG
AAATAAATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCGATAAAC
Found at i:9227523 original size:17 final size:17
Alignment explanation
Indices: 9227486--9227523 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
9227476 AATAACTAAT
*
9227486 TATTAAAAAATTGTATT
1 TATTAAAAAATTGTATA
9227503 TATTAAAATAATT-TATA
1 TATTAAAA-AATTGTATA
9227520 TATT
1 TATT
9227524 TATTTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATTAAAAAATTGTATA
Found at i:9228064 original size:11 final size:11
Alignment explanation
Indices: 9228048--9228081 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
9228038 ATTTTATTTA
9228048 AATTAATAAAT
1 AATTAATAAAT
9228059 AATTAATAAAT
1 AATTAATAAAT
*
9228070 -ATAAATAAAT
1 AATTAATAAAT
9228080 AA
1 AA
9228082 ATATTATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AATTAATAAAT
Found at i:9228152 original size:13 final size:14
Alignment explanation
Indices: 9228127--9228174 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
9228117 TAATTATCTG
9228127 AAATTATAATAATT
1 AAATTATAATAATT
9228141 AAATTA-AATAATTT
1 AAATTATAATAA-TT
* *
9228155 TAATTTTAAT-ATT
1 AAATTATAATAATT
9228168 AAATTAT
1 AAATTAT
9228175 TAAAATCAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 12 0.43
14 13 0.46
15 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATTATAATAATT
Found at i:9228158 original size:22 final size:22
Alignment explanation
Indices: 9228128--9228176 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
9228118 AATTATCTGA
9228128 AATTATAATAATTAA-ATTAAAT
1 AATTATAAT-ATTAATATTAAAT
* *
9228150 AATTTTAATTTTAATATTAAAT
1 AATTATAATATTAATATTAAAT
*
9228172 TATTA
1 AATTA
9228177 AAATCAGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATAATATTAATATTAAAT
Found at i:9228253 original size:14 final size:15
Alignment explanation
Indices: 9228229--9228257 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9228219 TAATAACTAT
9228229 ATATCATAATAAAAA
1 ATATCATAATAAAAA
9228244 ATAT-ATAATAAAAA
1 ATATCATAATAAAAA
9228258 TTAATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATCATAATAAAAA
Found at i:9228545 original size:13 final size:13
Alignment explanation
Indices: 9228527--9228575 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
9228517 AATTAAATAC
9228527 AAATATTTATTTA
1 AAATATTTATTTA
*
9228540 AAATA-TTAGTTA
1 AAATATTTATTTA
* *
9228552 ATAATCTCTATTTA
1 A-AATATTTATTTA
9228566 AAATATTTAT
1 AAATATTTAT
9228576 ATATTTTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
12 7 0.25
13 15 0.54
14 6 0.21
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (13 bp):
AAATATTTATTTA
Found at i:9228819 original size:30 final size:30
Alignment explanation
Indices: 9228779--9228837 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
9228769 TATATTAATT
*
9228779 TAATATATTAA-ATTTATAATAATAAATTAC
1 TAATAAATTAATATTTATAATAA-AAATTAC
*
9228809 TAATAAATTAATATTTATACTAAAAATTA
1 TAATAAATTAATATTTATAATAAAAATTA
9228838 ATAACAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
TAATAAATTAATATTTATAATAAAAATTAC
Found at i:9228820 original size:19 final size:19
Alignment explanation
Indices: 9228798--9228841 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
9228788 AAATTTATAA
9228798 TAATAAAT-TACTAATAAAT
1 TAATAAATATACTAA-AAAT
**
9228817 TAATATTTATACTAAAAAT
1 TAATAAATATACTAAAAAT
9228836 TAATAA
1 TAATAA
9228842 CAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
TAATAAATATACTAAAAAT
Found at i:9228942 original size:14 final size:14
Alignment explanation
Indices: 9228925--9228953 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9228915 GTTATTCATT
9228925 ATAATAATTAATTA
1 ATAATAATTAATTA
9228939 ATAATAATTAATTA
1 ATAATAATTAATTA
9228953 A
1 A
9228954 CCATCAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATAATTAATTA
Found at i:9229432 original size:18 final size:18
Alignment explanation
Indices: 9229409--9229461 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
9229399 TTAATTTATC
9229409 ATTAATTTTATAATATTA
1 ATTAATTTTATAATATTA
* *
9229427 ATTAATTATAAAATATT-
1 ATTAATTTTATAATATTA
*
9229444 A-TAATACTTATAATATTA
1 ATTAAT-TTTATAATATTA
9229462 TAATTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
18 15 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAATTTTATAATATTA
Found at i:9229460 original size:17 final size:17
Alignment explanation
Indices: 9229416--9229465 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
9229406 ATCATTAATT
*
9229416 TTATAATATTA-ATTAA
1 TTATAATATTATAATAA
*
9229432 TTATAAAATATTATAATAC
1 TTAT--AATATTATAATAA
9229451 TTATAATATTATAAT
1 TTATAATATTATAAT
9229466 TAATATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 4 0.14
17 11 0.38
18 7 0.24
19 7 0.24
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TTATAATATTATAATAA
Found at i:9232274 original size:180 final size:179
Alignment explanation
Indices: 9231435--9232484 Score: 667
Period size: 181 Copynumber: 5.9 Consensus size: 179
9231425 ATTATAAAGT
** ** ** *
9231435 GATTTAAAAAATAAATCTA-TTTATCAAACTTGTTCAAATAGTTATGACTATTTGAGCAATTATT
1 GATTT-AAAAATAAAT-TAGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATC
* * * * *
9231499 TATTTCAAATCTTTATGACATTTTGTTCTGTTATAAAACAATTGTTTC---T-ATACAAGCTTAT
64 TATTTCAAATCATTATAACATTTTGTTTTGTAATAAAACAATTGTTTCAATTCATACGAGCTTAT
* * **
9231560 TTGGATTAAAATAATA-ATAATTTATTAATATTTTGACAATTAATAAGTTAAAA
129 TCGGAATAAAATAATACA-AATTTATTAATA-TTCAACAATTAATAAG-TAAAA
* * * * *
9231613 -ATTTTAGAAATAAA-TA-TGT-TT--AC---CT-AGATAGTCAT-ATCTATTTGAAT-ATTAAT
1 GA-TTTAAAAATAAATTAGTTTATTGAACAAGTTCAAATAGTTATGA-CTATTTGAATAATT-AT
* * * * * * **
9231666 CTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAA-AACTTATTTTAGTTCATATAATG-T
63 CTATTTCAAATCATTATAACATTTTGTTTTGTAATAAAACAA-TTGTTTCAATTCATACGA-GCT
* * *
9231729 TATT-GGAAATAAAATAATAC-CATGTTATTAATATTCTGAA-AATTAATAATTAAGA
126 TATTCGG-AATAAAATAATACAAAT-TTATTAATATTC--AACAATTAATAAGTAAAA
* ** ** * * * * *
9231784 GATTTAAAAAATAAATCCA-TTTACCGGGCAAGTTTAAATAATTATGGCCATTTGAACAATTAT-
1 GATTT-AAAAATAAAT-TAGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATC
*** * * * * ** *** **
9231847 TGA-TTCGAAATTGCTATAACCTTTTGGTTTGTCATATAATGATT-TTATTTGTTCATATAAGCT
64 T-ATTTC-AAATCATTATAACATTTTGTTTTGTAATAAAACAATTGTT-TCAATTCATACGAGCT
*
9231910 TACTTC-GAATAAAATAATACAAATTT-TTAATATTAAGACAATTAATAAGTAAAA
126 TA-TTCGGAATAAAATAATACAAATTTATTAATATTCA-ACAATTAATAAGTAAAA
* * * * *
9231964 GATTTAAAATATAAATCTA-TTTATTGAACAAATTCAAATCGTTATAACTATCTGAATAATTATT
1 GATTTAAAA-ATAAAT-TAGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATC
* * * * *
9232028 TATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTTCCATCCATACGAGCTT
64 TATTTCAAA-TCATTATAAC-ATTTTGTTTTGTAATAAAACAATTGTTTCAATTCATACGAGCTT
* *
9232092 ATTCGGATTAAAATAATATC-GATTTATTAATATGTCAACAATTAATAAGTAAAA
127 ATTCGGAATAAAATAATA-CAAATTTATTAATAT-TCAACAATTAATAAGTAAAA
* * *** *
9232146 GATTTAAAAATATATAAGTTTACCAAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTA
1 GATTTAAAAATAAATTAGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTA
* * *** *
9232211 CTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAATTGTTTCAATTCATGTTAGCTTATTT
66 TTTCAAATCATTATAACATTTTGTTTTGTAATAAAACAATTGTTTCAATTCATACGAGCTTATTC
* * * * *
9232276 GAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAAAAAGTAAGA
131 GGAATAAAATAATACAAATTTATTAATA-TTCAACAATTAATAAGTAAAA
* * *
9232326 GAATTAAAAAAATAGATTTGTTTATTGAACAAGTTCAAATAGTTATGACTATATT-AATAATTAT
1 G-ATT-TAAAAATAAATTAGTTTATTGAACAAGTTCAAATAGTTATGACTAT-TTGAATAATTAT
* * * * * * * *
9232390 CTATTTCAAAACATTACAACCTTTTGTTTTGTCAA-AAAACAATTGGTTCTATTCATTCAAACTT
63 CTATTTCAAATCATTATAACATTTTGTTTTGT-AATAAAACAATTGTTTCAATTCATACGAGCTT
* *
9232454 ATTTC-AAATAAAATAATATAAATTTATTAAT
127 A-TTCGGAATAAAATAATACAAATTTATTAAT
9232485 GTTCCAAAAC
Statistics
Matches: 688, Mismatches: 128, Indels: 108
0.74 0.14 0.12
Matches are distributed among these distances:
167 6 0.01
168 57 0.08
169 1 0.00
171 14 0.02
172 50 0.07
173 2 0.00
174 4 0.01
175 4 0.01
177 10 0.01
178 4 0.01
179 6 0.01
180 169 0.25
181 186 0.27
182 167 0.24
183 8 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (179 bp):
GATTTAAAAATAAATTAGTTTATTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTA
TTTCAAATCATTATAACATTTTGTTTTGTAATAAAACAATTGTTTCAATTCATACGAGCTTATTC
GGAATAAAATAATACAAATTTATTAATATTCAACAATTAATAAGTAAAA
Found at i:9233292 original size:181 final size:181
Alignment explanation
Indices: 9232552--9233632 Score: 879
Period size: 181 Copynumber: 6.0 Consensus size: 181
9232542 TTTGAAAATT
* * * * * * *
9232552 AATAAGAGATTTAAAAACTAAATCTCG-TTACCAAACCAATTCAAATAGTTATGACTATTTGAAC
1 AATAAGAGATTTAAAAAATAAATC-AGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAAC
* * * * * * * * *
9232616 AATTATCTATCTCCAATTGTTATGA---TTGGTTTTGGTCCTAAAACATTTAATTTCTATTCA-A
65 AATTATCTATTTCAAATCGTTATGACCTTTTGTTTT-ATCATAAAATAATT-ATTT-TCTTCATA
* * * * * *
9232677 CAAGCTTATTTAG-AGTAAAAT-ATAGCTAAATTAATAATATTCTAAACATTAATA
127 CAAGCTTATTCAGAAATAAAATAATA-CTAATTTATTAATATTATAAAAATTAATA
* ** * * * * *
9232731 AGTAAG-GATTTAAAAAATAAATGTGTTT-GCTGAATCAGTTCAAATAGTTAAGACTATTAGAAT
1 AATAAGAGATTTAAAAAATAAATCAGTTTATC-GAATCAGTTCAAATAATTATGACTATTTGAAC
* * * ** *
9232794 AATTATCTATTTTAAATCGTTTTGACCTTTTG-TTTAGTTATAAAATAATT-GCTTCAACTCATA
65 AATTATCTATTTCAAATCGTTATGACCTTTTGTTTTA-TCATAAAATAATTATTTTC--TTCATA
* * *
9232857 CATGCTTATTC-GAAATAAAATAATA-TAATTTATTAACATTCA-AAAAATTATTA
127 CAAGCTTATTCAGAAATAAAATAATACTAATTTATTAATATT-ATAAAAATTAATA
* * * * *
9232910 AGTAAGA-AATTAGAAAAA-AAATCTA-TTTATC-AAACAAGTTCAAATATTTTTGACTATTTGA
1 AATAAGAGATTTA-AAAAATAAATC-AGTTTATCGAATC-AGTTCAAATAATTATGACTATTTGA
* * * *
9232971 ACAATTATCTATTTAAAATCGTTATGACCTTATATTTTATCATAAAATAATT-GTTTCAGTTCAT
63 ACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTATTTTC--TTCAT
* * * * *
9233035 AAAAGC---TTCTGAAATAAAATAATATTACTTTATTAATATTATAAAAATTGATA
126 ACAAGCTTATTCAGAAATAAAATAATACTAATTTATTAATATTATAAAAATTAATA
* * * * * * *
9233088 AGTTAGAGATTTAAAACATAAATCAGTTTATCAAATCAGTTCAAATAATTATGGCCATTTAAACA
1 AATAAGAGATTTAAAAAATAAATCAGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAACA
* * * *
9233153 ATTATTTATTTCAAATCATTATGAACTTTTGTTTTATCATAAAATAATTATTTTTTATCATACAA
66 ATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTATTTTCT-TCATACAA
*
9233218 GCCTATTCAG-AATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATA
130 GCTTATTCAGAAATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATA
* * * *
9233269 AATAGGAGATTTAAAAAATAAATCTGTTTATCGAATTAGTTTAAATAATTATGACTATTTGAACA
1 AATAAGAGATTTAAAAAATAAATCAGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAACA
* * * * *
9233334 ATTATATATTTCCAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTATCTTCATACAA
66 ATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTATTT-TCTTCATACAA
* * * * *
9233399 GCTTATT-TGAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATA
130 GCTTATTCAGAAATAAAATAATACTAATTTATTAATATTATAAAAATTAATA
* * * * * * * * * * * *
9233450 ACTGATAGATTTAAAAAATAAATTTA-TTTACCGAACCAATTCAAATAGTTAAGGCTATATGAAT
1 AATAAGAGATTTAAAAAATAAA-TCAGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAAC
* * * *
9233514 AATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAAATGT-TTTTGTTCATAT
65 AATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAAA-TAAT-TATTTTCTTCATAC
* * *
9233578 AAGTTTGTTCA-AAATAAAATAATATTAATTTATTAATATT-TCAAAAATTAATA
128 AAGCTTATTCAGAAATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATA
9233631 AA
1 AA
9233633 AGATTTAATA
Statistics
Matches: 726, Mismatches: 137, Indels: 76
0.77 0.15 0.08
Matches are distributed among these distances:
176 3 0.00
177 18 0.02
178 101 0.14
179 212 0.29
180 48 0.07
181 329 0.45
182 14 0.02
183 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AATAAGAGATTTAAAAAATAAATCAGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAACA
ATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTATTTTCTTCATACAAG
CTTATTCAGAAATAAAATAATACTAATTTATTAATATTATAAAAATTAATA
Found at i:9233495 original size:362 final size:355
Alignment explanation
Indices: 9232556--9233656 Score: 1036
Period size: 362 Copynumber: 3.1 Consensus size: 355
9232546 AAAATTAATA
* ** * *
9232556 AGAGATTTAAAAACTAAATCTCGTTACCAAACCAA-TTCAAATAGTTATGACTATTTGAACAATT
1 AGAGATTTAAAAAATAAATCTATTTATCAAA-CAAGTTCAAATAATTATGACTATTTGAACAATT
* * * * * *
9232620 ATCTATCTCCAATTGTTATGA---TTGGTTTTGGTCCTAAAACATTTAATTTCTATTCA-ACAAG
65 ATCTATTTCCAATCGTTATGACCTTTTGTTTT-GTCATAAAACAATT-ATTTATATTCATACAAG
* *
9232681 CTTATTT-AGAGTAAAAT-ATAGCTAAATTAATAATATTCTAAACATTAATAAGTAAGGATTTAA
128 CTTATTTGA-AATAAAATAATA-CT-AATTAATAATATTATAAA-ATTAATAAGTAA-GATTTAA
* * * * * *
9232744 AAAATAAATGTGTTTGCTGAATCAGTTCAAATAGTTAAGACTA-TTAGAATAATTATCTATTTTA
188 AAAATAAATTTATTTACCGAATCAGTTCAAATAGTTAAGGCTATTTA-AATAATTATCTATTTCA
* * ** ** *
9232808 AATCGTTTTGACCTTTTG-TTTAGTTATAAAATAATTGCTTCAACTCATACATGCTTATTC-GAA
252 AATCGTTATGACCTTTTGTTTTA-TCATAAAATAATTTTTTTTA-TCATACAAGCTTATTCAG-A
* * * *
9232871 ATAAAATAATATAATTTATTAACATTCAAAAAATTATTAAGT
314 ATAAAATAATATAATTTATTAATATTTAAAAAATTAATAAAT
* * *
9232913 A-AGAAATTAGAAAAA-AAATCTATTTATCAAACAAGTTCAAATATTTTTGACTATTTGAACAAT
1 AGAG-ATTTA-AAAAATAAATCTATTTATCAAACAAGTTCAAATAATTATGACTATTTGAACAAT
** * * * * * * *
9232976 TATCTATTTAAAATCGTTATGACCTTATATTTTATCATAAAATAATTGTTTCA-GTTCATAAAAG
64 TATCTATTTCCAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTATTT-ATATTCATACAAG
* * * * *
9233040 C-T-TCTGAAATAAAATAATATTACTTTATTAATATTATAAAAATTGATAAGTTAGAGATTTAAA
128 CTTATTTGAAATAAAATAATACTA-ATTAATAATATTAT-AAAATTAATAAG-TA-AGATTTAAA
* * * * * * * * *
9233103 ACATAAA-TCAGTTTATCAAATCAGTTCAAATAATTATGGCCATTTAAACAATTATTTATTTCAA
189 AAATAAATTTA-TTTACCGAATCAGTTCAAATAGTTAAGGCTATTTAAATAATTATCTATTTCAA
* * *
9233167 ATCATTATGAACTTTTGTTTTATCATAAAATAATTATTTTTTATCATACAAGCCTATTCAGAATA
253 ATCGTTATGACCTTTTGTTTTATCATAAAATAATT-TTTTTTATCATACAAGCTTATTCAGAATA
*
9233232 AAATAATACTAATTTATTAATATTTGAAAAATTAATAAAT
317 AAATAATA-TAATTTATTAATATTTAAAAAATTAATAAAT
* * ** *
9233272 AGGAGATTTAAAAAATAAATCTGTTTATCGAATTAGTTTAAATAATTATGACTATTTGAACAATT
1 A-GAGATTTAAAAAATAAATCTATTTATCAAACAAGTTCAAATAATTATGACTATTTGAACAATT
* * *
9233337 ATATATTTCCAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTATCTTCATACAAGCT
65 ATCTATTTCCAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTATATTCATACAAGCT
* * *
9233402 TATTTGAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAACTGATAGATTTAAAAA
130 TATTTGAAATAAAATAATACTAAT-TAATAATATTAT-AAAATTAATAAGT-A-AGATTTAAAAA
* * * *
9233467 ATAAATTTATTTACCGAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATC
191 ATAAATTTATTTACCGAATCAGTTCAAATAGTTAAGGCTATTTAAATAATTATCTATTTCAAATC
* * * * * * *
9233532 GTTATGACCTTTTGTTTTGTCATAAAACAAATGTTTTTGT-TCATATAAGTTTGTTCAAAATAAA
256 GTTATGACCTTTTGTTTTATCATAAAA-TAAT-TTTTTTTATCATACAAGCTTATTCAGAATAAA
*
9233596 ATAATATTAATTTATTAATATTTCAAAAATTAAT-AA-
319 ATAATA-TAATTTATTAATATTTAAAAAATTAATAAAT
*
9233632 A-AGATTTAATAAATAAATCTATTTA
1 AGAGATTTAAAAAATAAATCTATTTA
9233657 CCATACTATT
Statistics
Matches: 599, Mismatches: 114, Indels: 61
0.77 0.15 0.08
Matches are distributed among these distances:
356 6 0.01
357 91 0.15
358 147 0.25
359 60 0.10
360 103 0.17
361 7 0.01
362 174 0.29
363 10 0.02
364 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (355 bp):
AGAGATTTAAAAAATAAATCTATTTATCAAACAAGTTCAAATAATTATGACTATTTGAACAATTA
TCTATTTCCAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTATATTCATACAAGCTT
ATTTGAAATAAAATAATACTAATTAATAATATTATAAAATTAATAAGTAAGATTTAAAAAATAAA
TTTATTTACCGAATCAGTTCAAATAGTTAAGGCTATTTAAATAATTATCTATTTCAAATCGTTAT
GACCTTTTGTTTTATCATAAAATAATTTTTTTTATCATACAAGCTTATTCAGAATAAAATAATAT
AATTTATTAATATTTAAAAAATTAATAAAT
Found at i:9234820 original size:229 final size:227
Alignment explanation
Indices: 9234410--9234870 Score: 541
Period size: 229 Copynumber: 2.0 Consensus size: 227
9234400 TTTGAAAATC
* * ** ** *
9234410 AATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAATCAGTTCAAATGGTTAACATTATTAG
1 AATAAGTAAGAGATTTAAAAAATAAATATGTTTACCAAATCAGTTCAAATAATTAACACCATTAC
* * * *
9234475 AATAATTATCTATTTCATATCATTTTGATCTTTTGTTTAGTCATAAAATAATTGTTTCAGTTCAT
66 AATAATTATCTATTTCAAATCATTTTGACCTTTTGTTTAGTCATAAAACAATTGTTTCAGATCAT
* ** *
9234540 ACAAGCTTATTCGGAATAAATTAATACTAATTTATTAACATATGGAAAATTAATATGAAAGAGAT
131 ACAAGCTTATTCGGAATAAAATAATACTAATTTATTAACATATCAAAAATTAATAAGAAAGAGAT
**
9234605 TTAAAAAAATAAATCTATTTACCGAACAAATTCA
196 TT-AAAAAATAAATCTATTTACAAAAC-AATTCA
* * * *** *
9234639 AATAAGTAAGTGATTTAAAAAGTGAATATGTTTACCAAATCAGTTCAAATAATTATGGCCATTTC
1 AATAAGTAAGAGATTTAAAAAATAAATATGTTTACCAAATCAGTTCAAATAATTAACACCATTAC
** * ** *
9234704 AATAATTATCTATTTCAAATTGTTCTT-ACCTTTTGTTTGGTCATATGACAATTGTTTTTA-ATC
66 AATAATTATCTATTTCAAATCATT-TTGACCTTTTGTTTAGTCATAAAACAATTG-TTTCAGATC
* * * *
9234767 ATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAATC-TTTCAAAAATTATTAAGTAAGA
129 ATACAAGCTTATTCGGAATAAAATAATACTAATTTATTAA-CATATCAAAAATTAATAAGAAAGA
*
9234831 GATTTAAAAAATAAATCTGTTTACAAAACAATTCA
193 GATTTAAAAAATAAATCTATTTACAAAACAATTCA
9234866 AATAA
1 AATAA
9234871 TTATCACTAT
Statistics
Matches: 194, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
227 11 0.06
228 21 0.11
229 155 0.80
230 7 0.04
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (227 bp):
AATAAGTAAGAGATTTAAAAAATAAATATGTTTACCAAATCAGTTCAAATAATTAACACCATTAC
AATAATTATCTATTTCAAATCATTTTGACCTTTTGTTTAGTCATAAAACAATTGTTTCAGATCAT
ACAAGCTTATTCGGAATAAAATAATACTAATTTATTAACATATCAAAAATTAATAAGAAAGAGAT
TTAAAAAATAAATCTATTTACAAAACAATTCA
Found at i:9235139 original size:181 final size:180
Alignment explanation
Indices: 9234639--9238094 Score: 2287
Period size: 181 Copynumber: 19.4 Consensus size: 180
9234629 AACAAATTCA
* * * * * * * *
9234639 AATAAGTAAGTGATTTAAAAAGTGAATATGTTTACC-AAATCAGTTCAAATAATTATGGCCATTT
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACT-AGTTCAAATAGTTATGACTATTT
* * * * * * ** * *
9234703 CAATAATTATCTATTTCAAATTGTTCTTACCTTTTGTTTGGTCATATGACAATTGTTTTTAATCA
65 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
* *
9234768 TACAAGCTTATTTGGAATAAAATAATACTAATTTATTAATCTTTCAAAAATT
130 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT-AAAAATT
* ** * * * *
9234820 ATTAAGTAAGAGATTTAAAAAATAAATCTGTTTACAAAAC-AATTCAAATAATTATCACTATTAG
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * * * * * * * * *
9234884 AGCATTTGTATACTTCAAATTGTTATAACCTTTTGTTTGGTCATAAAACAATTATTTCTCTTCAT
66 AACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
** * * * *
9234949 GTAAGCTTATTTGAAATAAAATAAAACTAATCTAATAATATTATGAAAATT
131 ACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TAAAAATT
* * * ** *
9235000 AATAACTAAGAGATTTAAAAAATAAAAT-TGTTTGCCAAACTAGTTCAAATAGTTAAAACTATAT
1 AATAAGTAAGAGATTTAAAAAAT-AAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTT
* * * *
9235064 GAATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATAT-TTTCAATTC
65 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAAT-TGTTTCTATTC
* * *
9235128 ATACTAGCTTATTT-AGAATAAAATAA-AATAAATTTATTAAAATTTCAAAAATT
129 ATACAAGCTTATTTGA-AATAAAATAATACT-AATTTATTAATATTT-AAAAATT
** * * *
9235181 AATAAG--AGA-A-TTAAAAAATATGT-TGTTTACCTAA-TCGGTTCAAATAATTATGACTATTT
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACT-AGTTCAAATAGTTATGACTATTT
* *
9235240 GAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACTAATAT-TTT-TGTT
65 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAAC-AAT-TGTTTCTATT
* * *
9235303 CATATAAG-TT-TGTTCAAA-AAAA-AATACTAATCTATTAATATTTCAAAAATT
128 CATACAAGCTTAT-TTGAAATAAAATAATACTAATTTATTAATATTT-AAAAATT
* * * * * * *
9235354 AATAA--AA-A-TTTTAAAAAATAAATCTTTTTATCAAATTGGTTC-AA-A-TTAAGACTATTT-
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * * * * * * * *
9235411 AAGC-A--AT-TATTTCAAATCATTATGACTTTTTGTTCTATTATAAGATAATAGTTTCTATTTA
66 AA-CAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
* * * * * * *
9235472 TTCAAGCTTATTCGGATTAAAATAATACAAATTTATTAATATTTTGACAATT
130 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTTAAAAATT
* * * * * * * * *
9235524 AATAAGTAAAAAAATGTAAAAAATTAAATATGTTTACTGAACTAGATCAAACAATCATGACTATT
1 AATAAGT-AAGAGATTTAAAAAA-TAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATT
* * * * * * * *
9235589 TGAATAGTTATCTATTTCAAATTGTTATGACATTTTCTTTTGTCATAAAAAAATTATTTCAATTC
64 TGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTC
* ** * * * * *
9235654 ATATAAGCTTATTCAAAATAAAATAACATTAAGTTATTACTATTTTGAAAATT
129 ATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTTAAAAATT
* * * * * * * * *
9235707 AATAATTAAGAGATTTAAAAAATGAATCTATTTACTGAACAAGTTTAAATAATTATAATTATTTG
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* ** * * * ** * * *
9235772 AACAATTATTTATTGGAAATCGCTATAACCTTTTGCTTTGTCATAAAATGATTATTTTTGTTCAT
66 AACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
*
9235837 ACAAGCTTATTTTG-AATAAAATAATACAAATTTATTAA-A-TTAAGACAATT
131 ACAAGCTTA-TTTGAAATAAAATAATACTAATTTATTAATATTTAA-A-AATT
* * * *
9235887 AATAAATAAAAGA-TT-AAAAATAAATCTGTTTACTGAA-TAAGTTCAAATCGTTATGACTATTT
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACT-AGTTCAAATAGTTATGACTATTT
* * * * * ** *
9235949 GAATAATTATTTATTTCAAATTGTTATGACTTTTTATTTTGTTGTAAAACAATTGCTTT-TGTTC
65 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCTATTC
* * * * * *
9236013 ATACTAGCTTATTCGGAATAAAATAATATTAATTTATTAATATTTCCATAATT
129 ATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT-AAAAATT
* * * * * * * * *
9236066 TATAAGTAAAATATTTAAAAAAATAAATATGTTTGCCGAACAAGTTAAAACAGTAATGACTATTT
1 AATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTT
* * * * * * * * *
9236131 GAATAATAATCTATTTCAAATCATTGTAAGCTTTTGTTTTGTAATAAAAATAATTGCTTC-AGTT
65 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT-AAAACAATTGTTTCTA-TT
* * * **
9236195 CATATAAGCCTATTTGAGAT---A-AA-A-T-A---A-T-AT-TCCAAAAATT
128 CATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTAAAAATT
* * * * * * * *
9236235 AA-AGAGTAACAGAATTAAAAATATGAAT-TTTCTTATCGATCAAGTTGAAATAGTTATGACTAT
1 AATA-AGTAAGAGATTTAAAAA-ATAAATCTGT-TTACCGAACTAGTTCAAATAGTTATGACTAT
* * * * * * * *
9236298 CTAAACAATTATCTATTTCAAAACATTATGACATTTTATTTTATCATAAAACAATTGGTTCTATT
63 TTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATT
* ** * *
9236363 AATGTAAGCGTATTTTG-AATAAAATAATA-TAAATTTATTAATATTCCAAAAATT
128 CATACAAGCTTA-TTTGAAATAAAATAATACT-AATTTATTAATATT-TAAAAATT
* * * * * *
9236417 AATAAG-AA-A-ATTTTAGAAAATAAAGCTATTTTCTGAAC-ACATTCAAATAGTTATGACTATT
1 AATAAGTAAGAGA-TTTAAAAAATAAATCTGTTTACCGAACTA-GTTCAAATAGTTATGACTATT
* *
9236478 TGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTCAT-AAACTAATTGTTTCTATT
64 TGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAAC-AATTGTTTCTATT
* * * * **
9236542 CAAACAAGCTTATTTGGAATAAAATAATTCTAATTAATTAATATTCCAAAATT
128 CATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTAAAAATT
* * * * * * *
9236595 AGTAAGTAAAAGATTT-AAAAATAAATTTATTTACCG-AGTGAGTTCAAATAGTTATGATTGTTT
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACT-AGTTCAAATAGTTATGACTATTT
* * * * *
9236658 GAACAATTATTTATTTCAAATTGTTATGATCTTTTGTTTTGTTATAAAACAATTGTTTCTATCCA
65 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
* * * *
9236723 TACAAGTTTATTTGGAATAAAATAATACTAATATATTAACATTCTAAAAATT
130 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TAAAAATT
* * * * * *
9236775 AATAAGT-TGAAGATTTAAAAAATTAAT-TAGTTTATCGAACCAGTTCAAATAGTCATGTCTATT
1 AATAAGTAAG-AGATTTAAAAAATAAATCT-GTTTACCGAACTAGTTCAAATAGTTATGACTATT
* * * * **
9236838 TGAACTATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTGTAAAACAATTGTTTCTATTC
64 TGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTC
* *
9236903 ATACACA-ATTATTT-ATAATAAAAT-ATACTAATTTATTACTATTTCAAAAA-T
129 ATACA-AGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTT-AAAAATT
* * * * * * *
9236954 --TAA-TAAGAGATTTAAAAATTAAATCTCTTTACCGAACCAGTTTAAATAATTATAACTATTTA
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * * * * * *
9237016 AACAATTATTTATCTCAAATCGTTATGATC-TTTGTTTTATCCTAAAACATTTGTTTCTGTTCAT
66 AACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
* * * * *
9237080 ACAAGCTTATTT-AGAGTAAAATATTGCTAAGTTAATAATATTTTAAAAATT
131 ACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATA-TTTAAAAATT
* * * * * * *
9237131 AATAAGTAA-AGATTT-AAAAATAAATGTGTTTGCTGATCCAGTTCAAATAGTTAAGACTATTAG
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * * * * * *
9237194 AACAATTATCTATTTTAAATCATTCTAACCTTTTGTTTAGTCATAAAATAATTGTTTC-AGATCA
66 AACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCA
* * * *
9237258 TACATGCTTATTTAAAATAAAATAATACTAATTTATTAACATTCAGAAAATT
130 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTA-AAAATT
* * * * *
9237310 AATAGGCAAGAAATTTAAAAAAATAAATTTGTTTATCC-AACAAGTTCAAATAGTTATGACTATT
1 AATAAGTAAGAGATTT-AAAAAATAAATCTGTTTA-CCGAACTAGTTCAAATAGTTATGACTATT
* * * * * ** *
9237374 TGAATAATTATCTATCTAAAATCTTTATGACCTTTTATTTCATCATAAAACAATTGTTT-TAGAT
64 TGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TT
* * *** * * *
9237438 CATAAAAGCTTGTCCCAAATTAAATAATATTACTTTATTAATATTTTAAAAATT
128 CATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTTAAAAATT
* * ** * * * *
9237492 GATAAGTTAA-AGATTTAAAACATAAAT-TAGTTTATTGAA-TGAGTTAAAATAATTATGGCCAT
1 AATAAG-TAAGAGATTTAAAAAATAAATCT-GTTTACCGAACT-AGTTCAAATAGTTATGACTAT
* * * * *
9237554 TTGAACATTTATCTATTTCAAATCATTATGAACTTTTGTTTTGACATAAAACAATTGTTTTTCA-
63 TTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCT-AT
* * * * *
9237618 TCATACTAGCTTA-ATCATAATAAAAAAATATTAATTTATTAATATTTCAAAAATT
127 TCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTT-AAAAATT
* * * * *
9237673 AATAAGTAGGAGATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACTATTTG
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * * * *
9237738 ---TATT-TC-AATT----TC-TTATAACCTTTTGTTCTT-TCATAAAATAATTATTTCTATTCA
66 AACAATTATCTATTTCAAATCGTTATGACCTTTTGTT-TTGTCATAAAACAATTGTTTCTATTCA
* * * * * *
9237792 TACAAGTTTATTCGGAATAAAA-AATACTAATGTAATAATATTCTGAAAATT
130 TACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TAAAAATT
* * * * ** * * * **
9237843 AATAACTAATAGATTTAAAAAATAAATTTGTTTGCTAAACCAGTTCAAATAGTTAAGGCTATAGG
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
* * ** * * * * *
9237908 AACAATCT-T-TATTTTAAATTGTTATGATATTTTGTTTTATCGTAAAATAATT-TTTTTAATTT
66 AACAAT-TATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCT-ATTC
* * *
9237970 TTACTAA-CTTA-TTCATAATAAAATAA-A-AACATTTATTAATATTTCAAAAATT
129 ATAC-AAGCTTATTTGA-AATAAAATAATACTA-ATTTATTAATATTT-AAAAATT
* * * * * * * * * *
9238022 AATCAA-TAAAAGATTTAATAAATCATTTTGTTT-GCTAAATCAGTTGAAATAATTATGACTATT
1 AAT-AAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACT-AGTTCAAATAGTTATGACTATT
9238085 TGAACAATTA
64 TGAACAATTA
9238095 AAATAAATTA
Statistics
Matches: 2562, Mismatches: 564, Indels: 300
0.75 0.16 0.09
Matches are distributed among these distances:
166 6 0.00
167 39 0.02
168 39 0.02
169 90 0.04
170 105 0.04
171 65 0.03
172 9 0.00
173 49 0.02
174 27 0.01
175 62 0.02
176 189 0.07
177 34 0.01
178 222 0.09
179 463 0.18
180 252 0.10
181 543 0.21
182 247 0.10
183 121 0.05
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTG
AACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT
ACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTAAAAATT
Found at i:9236526 original size:179 final size:177
Alignment explanation
Indices: 9236277--9238094 Score: 1202
Period size: 179 Copynumber: 10.2 Consensus size: 177
9236267 TTATCGATCA
* * * * * * *
9236277 AGTTGAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTATTTTAT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * ** *
9236342 CATAAAACAATTGGTTCTATTAATGTAAGCGTATTTTGAATAAAATAATATAAATTTATTAATAT
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTTTGAATAAAATAATAT-AATTTATTAATAT
* *
9236407 TCCAAAAATTAATAAG-AAAATTTTAGAAAATAAAGCTATTTTCTGAACAC
130 TTCAAAAATTAATAAGTAAAA-TTTA-AAAATAAA-TTATTTTCTGAACAC
*
9236457 A-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCATTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * *
9236521 CAT-AAACTAATTGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATTCTAATTAATTAATA
66 CATAAAAC-AATTGTTTCTATTCATACAAGCTTATTTTGAATAAAATAA-TATAATTTATTAATA
* * * * ***
9236585 -TTCCAAAATTAGTAAGTAAAAGATTTAAAAATAAATTTATTTACCG-AGTG
129 TTTCAAAAATTAATAAGT-AAA-ATTTAAAAATAAA-TTATTTTCTGAACAC
* * * ** *
9236635 AGTTCAAATAGTTATGATTGTTTGAACAATTATTTATTTCAAATTGTTATGATCTTTTGTTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * * *
9236700 TATAAAACAATTGTTTCTATCCATACAAGTTTATTTGGAATAAAATAATACTAATATATTAACA-
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTTTGAATAAAATAATA-TAATTTATTAATAT
* *
9236764 TTCTAAAAATTAATAAGTTGAAGATTTAAAAAATTAATTAGTTTATC-GAAC-C
130 TTC-AAAAATTAATAAG-T-AAAATTT-AAAAATAAATTA-TTT-TCTGAACAC
* * * ** * *
9236816 AGTTCAAATAGTCATGTCTATTTGAACTATTATCTATTTCAAATTGTTATGACATTTTATTTTGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
** * *
9236881 TGTAAAACAATTGTTTCTATTCATACACA-ATTATTTAT-AATAAAAT-ATACTAATTTATTACT
66 CATAAAACAATTGTTTCTATTCATACA-AGCTTATTT-TGAATAAAATAATA-TAATTTATTAAT
* * * *
9236943 ATTTCAAAAATTAATAAG--AGATTTAAAAATTAAATCTCTTTACCGAAC-C
128 ATTTCAAAAATTAATAAGTAAAATTTAAAAA-TAAAT-TATTTTCTGAACAC
* * * * * * * * *
9236992 AGTTTAAATAATTATAACTATTTAAACAATTATTTATCTCAAATCGTTATGATC-TTTGTTTTAT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * * * * * * *
9237056 CCTAAAACATTTGTTTCTGTTCATACAAGCTTATTTAGAGTAAAATATTGCTAAGTTAATAATAT
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTTTGAATAAAATAAT-ATAATTTATTAATAT
* * * *
9237121 TTTAAAAATTAATAAGTAAAGATTTAAAAATAAATGTGTTTGCTGATC-C
130 TTCAAAAATTAATAAGTAAA-ATTTAAAAATAAAT-TATTTTCTGAACAC
* * * * * *
9237170 AGTTCAAATAGTTAAGACTATTAGAACAATTATCTATTTTAAATCATTCTAACCTTTTGTTTAGT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * ** *
9237235 CATAAAATAATTGTTTC-AGATCATACATGCTTATTTAAAATAAAATAATACTAATTTATTAACA
66 CATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTTGAATAAAATAATA-TAATTTATTAATA
* * * *
9237299 -TTCAGAAAATTAATAGGCAAGAAATTTAAAAAAATAAATT-TGTTTATCCAACA-
129 TTTCA-AAAATTAATAAG-TA-AAATTT--AAAAATAAATTAT-TTTCT-GAACAC
* * * * * **
9237352 AGTTCAAATAGTTATGACTATTTGAATAATTATCTATCTAAAATCTTTATGACCTTTTATTTCAT
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * * **** * *
9237417 CATAAAACAATTGTTT-TAGATCATAAAAGCTTGTCCCAAATTAAATAATATTACTTTATTAATA
66 CATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTTGAATAAAATAATA-TAATTTATTAATA
* * **
9237481 TTTTAAAAATTGATAAGTTAAAGATTTAAAACATAAATTAGTTTAT-TGAA-TG
129 TTTCAAAAATTAATAAG-TAAA-ATTTAAAA-ATAAATTA-TTT-TCTGAACAC
* * * * * * *
9237533 AGTTAAAATAATTATGGCCATTTGAACATTTATCTATTTCAAATCATTATGAACTTTTGTTTTGA
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
* * ** *
9237598 CATAAAACAATTGTTTTTCA-TCATACTAGCTTAATCAT-AATAAAAAAATATTAATTTATTAAT
66 CATAAAACAATTGTTTCT-ATTCATACAAGCTT-ATTTTGAATAAAATAATA-TAATTTATTAAT
* *
9237661 ATTTCAAAAATTAATAAGTAGGAGATTTAAAAAATAAA-TATGTTTATCGAACA-
128 ATTTCAAAAATTAATAAGTA--AAATTT-AAAAATAAATTAT-TTTCT-GAACAC
* * * *
9237714 AATTCAAATAGTTATGACTATTTG---TATT-TC-AATT----TC-TTATAACCTTTTGTTCTT-
1 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTT-TTG
* * * ** * *
9237768 TCATAAAATAATTATTTCTATTCATACAAGTTTATTCGGAATAAAA-AATACTAATGTAATAATA
65 TCATAAAACAATTGTTTCTATTCATACAAGCTTATTTTGAATAAAATAATA-TAATTTATTAATA
* * *
9237832 -TTCTGAAAATTAATAACTAATAGATTTAAAAAATAAATT-TGTTTGCTAAAC-C
129 TTTC-AAAAATTAATAAGTAA-A-ATTT-AAAAATAAATTAT-TTT-CTGAACAC
* * ** * ** ** *
9237884 AGTTCAAATAGTTAAGGCTATAGGAACAATCT-T-TATTTTAAATTGTTATGATATTTTGTTTTA
1 AGTTCAAATAGTTATGACTATTTGAACAAT-TATCTATTTCAAATCATTATGACCTTTTGTTTTG
* * * ** * *
9237947 TCGTAAAATAATT-TTTTTAATTTTTACTAA-CTTATTCAT-AATAAAATAA-AAACATTTATTA
65 TCATAAAACAATTGTTTCT-ATTCATAC-AAGCTTATT-TTGAATAAAATAATATA-ATTTATTA
* *
9238008 ATATTTCAAAAATTAATCAA-TAAAAGATTTAATAAAT-CATTTTGTTTGCT-AA-ATC
126 ATATTTCAAAAATTAAT-AAGT-AAA-ATTTAA-AAATAAATTAT-TTT-CTGAACA-C
* *
9238063 AGTTGAAATAATTATGACTATTTGAACAATTA
1 AGTTCAAATAGTTATGACTATTTGAACAATTA
9238095 AAATAAATTA
Statistics
Matches: 1301, Mismatches: 248, Indels: 179
0.75 0.14 0.10
Matches are distributed among these distances:
168 1 0.00
169 3 0.00
170 72 0.06
171 47 0.04
172 4 0.00
173 2 0.00
174 6 0.00
175 50 0.04
176 90 0.07
177 3 0.00
178 97 0.07
179 409 0.31
180 87 0.07
181 277 0.21
182 147 0.11
183 6 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (177 bp):
AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGT
CATAAAACAATTGTTTCTATTCATACAAGCTTATTTTGAATAAAATAATATAATTTATTAATATT
TCAAAAATTAATAAGTAAAATTTAAAAATAAATTATTTTCTGAACAC
Found at i:9247651 original size:145 final size:145
Alignment explanation
Indices: 9247395--9247658 Score: 322
Period size: 145 Copynumber: 1.8 Consensus size: 145
9247385 TTTTAAATCA
* * * * **
9247395 TTATAACCATTTGTTTTGTCATAAAATAATTGTTTCTGTTCATATAGTCTTATTTAGAATAAGGT
1 TTATAACCATTTGTTTTATCACAAAATAATTGTTTCTGTTCAAAAAGTCTTATTTAGAATAACAT
*
9247460 AATGCTAATGTATTAATATTTTGAAAATCATAAGTAATGGATTTAAAAAATGAATCTGTTAGCCT
66 AATGCTAATGTATTAATATTTTGAAAATAATAAGTAATGGATTTAAAAAATGAATCTGTTAGCCT
9247525 GACCAGTGTAAATAG
131 GACCAGTGTAAATAG
* * *
9247540 TTATGACCTTTTGTTTTATCACAAAGTAATTGTTTCTGTTCGAAAAAG-CTTATTT-GAAATAAC
1 TTATAACCATTTGTTTTATCACAAAATAATTGTTTCTGTTC-AAAAAGTCTTATTTAG-AATAAC
* * * *
9247603 ATAAAT-CTAATTTATTAATATTCTT-AACATAATGAGTAA-GAGATTTAAAAGATGAA
64 AT-AATGCTAATGTATTAATATT-TTGAAAATAATAAGTAATG-GATTTAAAAAATGAA
9247659 ATTATTTTTC
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
144 2 0.02
145 89 0.89
146 9 0.09
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (145 bp):
TTATAACCATTTGTTTTATCACAAAATAATTGTTTCTGTTCAAAAAGTCTTATTTAGAATAACAT
AATGCTAATGTATTAATATTTTGAAAATAATAAGTAATGGATTTAAAAAATGAATCTGTTAGCCT
GACCAGTGTAAATAG
Found at i:9248637 original size:358 final size:356
Alignment explanation
Indices: 9247534--9249435 Score: 1391
Period size: 358 Copynumber: 5.3 Consensus size: 356
9247524 TGACCAGTGT
* * ** ** * *
9247534 AAATAGTTATGACCTTTTGTTTTATCACAAAGTAATTGTTTCTGTTCGA-AAAAGCTTATTT-GA
1 AAATAGTTATGACATTTTGTTTTATCATAAAACAATTGTTTCCATTC-ATACAAGTTTATTTCG-
* * * * * * *
9247597 AATAACATAAATCTAATTTATTAATATTCTTAACA-TAATGAGTAAGAGATTTAAAAGATGAAAT
64 AATAAAAT-AATATAATTTATTAATATT-TGAAAATTAATAAGTAAAAGA-TTAAAA-A-AAAAT
9247661 -TATTTTTCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATG
124 ATATTTTTCGAACAAGTTCAAATAGTTATGACTATTTGAA-AATTATCTATTTCAAATCATTATG
* * *
9247725 ACCTTTTATTTTGTTATAAAAC-AATTTTTTCTACTCATACAAGCTTATTTCAAATAAAATTATA
188 ACCTTTTATTTTGTTATAAAACAAATGTTTT-TATTCATACAAGCTTATTTAAAATAAAA-TATA
* * * * *
9247789 CAAATTTATTAATATT-TAGACATTTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCAAA
251 CTAATTTATTAATATTCCA-AAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACCAAA
* *
9247853 TAAGTTCAAATAGTCAT-ATCTGTTTGAACAATTATTTATTTC
315 CAAGTTCAAATAGTTATGAT-TGTTTGAACAATTATTTATTTC
** * * * * *
9247895 AAACCGTTATGACATTTTTGTTTTATGATAAAACAATTGTTTTTC-TCCATACAAGCTTATTTGG
1 AAATAGTTATGACA-TTTTGTTTTATCATAAAACAATTG-TTTCCATTCATACAAGTTTATTTCG
* * * *
9247959 ATTAAAATAATATTAATTTTTTAATATTTTGACAATTAATAAGTAAAAGATTTTAAAAATAAATA
64 AATAAAATAATA-TAATTTATTAATA-TTTGAAAATTAATAAGTAAAAGA--TTAAAAAAAAATA
** * * * * *
9248024 TATTTACCAAACAAGTTCAAATAGTCATAACTATTTGAGTAAATTATCTATTTAAAATCATTTTG
125 TATTTTTCGAACAAGTTCAAATAGTTATGACTATTTGA--AAATTATCTATTTCAAATCATTATG
* ** * * ** * * *
9248089 ACCTTTTTTTTTGTCCTAAAACAATTGTATCAATTCATATAGGCTTATTCAAAATAAAATAATAC
188 ACCTTTTATTTTGTTATAAAACAAATGTTTTTATTCATACAAGCTTATTTAAAATAAAAT-ATAC
* * * * * *
9248154 TAATTTATTAATATTCCAAAAAATAATGAGTAAGAGATTTAAAAAATGAAA-CTATTTTCTAAAC
252 TAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAAT-AAATCTGTTTACCAAAC
* * *
9248218 AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
316 AAGTTCAAATAGTTATGATTGTTTGAACAATTATTTATTTC
* * * * *
9248259 AAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTCCCATTCATACAAGTTTATTTTGAA
1 AAATAGTTATGACATTTTGTTTTATCATAAAACAATTGTTTCCATTCATACAAGTTTATTTCGAA
* * * *
9248324 TAAAATAATATAAATTTGTTAATATTTCAAAAATTAATAAGTAAAA-A-TAAAAAAAAATTTGTT
66 TAAAATAATAT-AATTTATTAATATTT-GAAAATTAATAAGTAAAAGATTAAAAAAAAATATATT
* * * * * * *
9248387 TTTTGAACATGTTGAAATAGTTATGACTATTTGAACAATCATCTTTTTCGAAT-AGTTATGACAT
129 TTTCGAACAAGTTCAAATAGTTATGACTATTTGAA-AATTATCTATTTCAAATCA-TTATGACCT
* * * * * * *
9248451 TTTGTTTCGTTATAAACCAAATGTTTTTGTTCGTACAAG-TGTATTTGAAATAAAATAGTACTAG
192 TTTATTTTGTTATAAAACAAATGTTTTTATTCATACAAGCT-TATTTAAAATAAAATA-TACTAA
* ** * **
9248515 TTTATTAATATTCCAAAAATTGATAAGTAAAAGAGCTAAAAAGTAAATCTGTTTACCATGCAAGT
255 TTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACCAAACAAGT
*
9248580 TCAAATAGTTATGATTGTTTGAATAATTATTTATTTC
320 TCAAATAGTTATGATTGTTTGAACAATTATTTATTTC
* * * *
9248617 AAATAGTTATGATATTTTGTTTTATCATAAAAAAATTGTTTCAATTCATACAGGTTTA-TTCGAA
1 AAATAGTTATGACATTTTGTTTTATCATAAAACAATTGTTTCCATTCATACAAGTTTATTTCG-A
* * * *
9248681 ATAAAATAATACTAATTTATTAATATTTGAAAATTAATAGGTAAGAGATTTAAAAATAAATATGT
65 ATAAAATAATA-TAATTTATTAATATTTGAAAATTAATAAGTAAAAGA-TTAAAAAAAAATATAT
** * * * * **
9248746 TTACCGAACAAGTTCAAATAATCATGTCTATTTGAATAATTATCTATTTGAAATTGTTATGACCT
128 TTTTCGAACAAGTTCAAATAGTTATGACTATTTGAA-AATTATCTATTTCAAATCATTATGACCT
** * * * ** * *
9248811 TTTGGTTAGTTATAAAAC-AAT-TTGTTCATGCA-A-AA--TTA-GCAAAATAAAATAATATTGA
192 TTTATTTTGTTATAAAACAAATGTT-TTTATTCATACAAGCTTATTTAAAATAAAAT-ATACTAA
*** * * * **
9248869 TTTATTAATATTTTGAAAA-T--TAA-TAAAACATTTAAAAACTAAATCTATTTATGAAA-ACAG
255 TTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACCAAACA-AG
* * *
9248929 TTTAAATAGTTATGACTAT-TTTG-ACAGTTATCTATCTT-
319 TTCAAATAGTTATGA-T-TGTTTGAACAATTATTTAT-TTC
* * ** * *
9248967 AAATCA-TTATG--ATCTTTATTTTGTCATAAAACAATTGTTTCTTTTCATACATGCTTA-TTCG
1 AAAT-AGTTATGACAT-TTTGTTTTATCATAAAACAATTGTTTCCATTCATACAAGTTTATTTCG
* * *** * *
9249028 AATTAAAATAATACTAATTTAATAACATCCAAAAATTAATATGTAAGAGATTTAAAAAAATAA-A
64 AA-TAAAATAATA-TAATTTATTAATATTTGAAAATTAATAAGTAAAAGA-TTAAAAAAA-AATA
* * ** * * * *
9249092 TATGTTTGCCGAACCAGTTCAAATAGTTAAAACTATTAGAACAGTTATCTATTTTAAATCATTCT
125 TAT-TTT-TCGAACAAGTTCAAATAGTTATGACTATTTGAA-AATTATCTATTTCAAATCATTAT
* * * * * * ** *
9249157 AACC-TTTGTTTAGTCATAAAACAATTATTTCAATTCATATAAGCTTATTTAAAATAAAATAATA
187 GACCTTTTATTTTGTTATAAAACAAATGTTTTTATTCATACAAGCTTATTTAAAATAAAAT-ATA
* ** * * * * *
9249221 CTAATTTATTAACATTTGAGAATTTAATGAGTAAGAGATTTAAAAATATAAATCTGTTTACTAAA
251 CTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAA-ATAAATCTGTTTACCAAA
* * *
9249286 CAA-TTCAAATAGATT-TGACTATTTGAACAATTTTTTATTT-
315 CAAGTTCAAATAG-TTATGATTGTTTGAACAATTATTTATTTC
* * * * * * * ** *
9249326 AAAGTCA-TTATGACCTTTTATTTTGTAATAAAACAATTGTTTCGACTCATAAAAACTTA-TACG
1 AAA-T-AGTTATGACATTTTGTTTTATCATAAAACAATTGTTTCCATTCATACAAGTTTATTTCG
* * *
9249389 AAATAAAATAATATTATTTTACTAATATTTCAAAAATTAATAAGTAA
64 -AATAAAATAATA-TAATTTATTAATATTT-GAAAATTAATAAGTAA
9249436 GATATTTAGA
Statistics
Matches: 1226, Mismatches: 252, Indels: 125
0.76 0.16 0.08
Matches are distributed among these distances:
348 4 0.00
349 94 0.08
350 78 0.06
351 65 0.05
352 4 0.00
353 3 0.00
354 28 0.02
355 6 0.00
356 31 0.03
357 28 0.02
358 227 0.19
359 58 0.05
360 118 0.10
361 92 0.08
362 85 0.07
363 129 0.11
364 166 0.14
365 10 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (356 bp):
AAATAGTTATGACATTTTGTTTTATCATAAAACAATTGTTTCCATTCATACAAGTTTATTTCGAA
TAAAATAATATAATTTATTAATATTTGAAAATTAATAAGTAAAAGATTAAAAAAAAATATATTTT
TCGAACAAGTTCAAATAGTTATGACTATTTGAAAATTATCTATTTCAAATCATTATGACCTTTTA
TTTTGTTATAAAACAAATGTTTTTATTCATACAAGCTTATTTAAAATAAAATATACTAATTTATT
AATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACCAAACAAGTTCAAAT
AGTTATGATTGTTTGAACAATTATTTATTTC
Found at i:9249153 original size:180 final size:180
Alignment explanation
Indices: 9247540--9249543 Score: 1594
Period size: 181 Copynumber: 11.2 Consensus size: 180
9247530 GTGTAAATAG
* * ** * * * *
9247540 TTATGACCTTTTGTTTTATCACAAAGTAATTGTTTCTGTTCGA-AAAAGCTTATTTGAAATAACA
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTC-ATACAAGCTTATTCGAAATAAAA
* * * *
9247604 TAA-ATCTAATTTATTAATA-TTCTTAACA-TAATGAGTAAGAGATTTAAAAGATGAAATTAT-T
65 TAATA-CTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAAT-AAA-TATGT
* *
9247665 TTTCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
126 TTCCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * *
9247720 TTATGACCTTTTATTTTGTTATAAAACAATTTTTTCTACTCATACAAGCTTATTTC-AAATAAAA
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTA-TTCGAAATAAAA
* * * * * *
9247784 TTATACAAATTTATTAATATTT-AGACATTTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTA
65 TAATACTAATTTATTAATATTTCA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT-
* * * * * * *
9247848 CCAAATAAGTTCAAATAGTCAT-ATCTGTTTGAACAATTATTTATTTCAAACCG
128 CCGAACAAGTTCAAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATCA
* * * * * * * * *
9247901 TTATGACATTTTTGTTTTATGATAAAACAATTGTTTTTCTCCATACAAGCTTATTTGGATTAAAA
1 TTATGAC-CTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAA
* * ** * * * *
9247966 TAATATTAATTTTTTAATATTTTGACAATTAATAAGTAAAAGATTTTAAAAATAAATATATTTAC
65 TAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT-C
* * * *
9248031 CAAACAAGTTCAAATAGTCATAACTATTTGAGTA-AATTATCTATTTAAAATCA
129 CGAACAAGTTCAAATAGTTATGACTATTTGA--ACAATTATCTATTTCAAATCA
* * * * * * * *
9248084 TTTTGACCTTTTTTTTTGTCCTAAAACAATTGTATCAATTCATATAGGCTTATTCAAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * *
9248149 AATACTAATTTATTAATATTCCAAAAAATAATGAGTAAGAGATTTAAAAAATGAAACTAT-TTTC
66 AATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAT-AAA-TATGTTTC
** **
9248213 TAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTG
129 CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * *
9248265 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTCCCATTCATACAAGTTTATTTTG-AATAAAA
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTA-TTCGAAATAAAA
* * *
9248329 TAATA-TAAATTTGTTAATATTTCAAAAATTAATAAGTAA-A-A-ATAAAAAA-AAATTTGTTTT
65 TAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATG-TTT
** * * * * *
9248389 TTGAACATGTTGAAATAGTTATGACTATTTGAACAATCATCTTTTTCGAAT-A
128 CCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * * * * *
9248441 GTTATGACATTTTGTTTCGTTATAAACCAAATGTTTTTGTTCGTACAAG-TGTATTTGAAATAAA
1 -TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCT-TATTCGAAATAAA
* * * * * ** * *
9248505 ATAGTACTAGTTTATTAATATTCCAAAAATTGATAAGTAAAAGAGCTAAAAAGTAAATCTGTTTA
64 ATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT-
* * * * *
9248570 CC-ATGCAAGTTCAAATAGTTATGATTGTTTGAATAATTATTTATTTCAAAT-A
128 CCGA-ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
** * * * * *
9248622 GTTATGATATTTTGTTTTATCATAAAAAAATTGTTTCAATTCATACAGGTTTATTCGAAATAAAA
1 -TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAA
* *
9248687 TAATACTAATTTATTAATATTT-GAAAATTAATAGGTAAGAGATTT-AAAAATAAATATGTTTAC
65 TAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTT-C
* * * * * **
9248750 CGAACAAGTTCAAATAATCATGTCTATTTGAATAATTATCTATTTGAAATTG
129 CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * *
9248802 TTATGACCTTTTGGTTAGTTATAAAACAATT-TGTTC-ATGCA-A-AA--TTA-GCAAAATAAAA
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGT-TTCTATTCATACAAGCTTATTCGAAATAAAA
* * ** * * * * **
9248860 TAATATTGATTTATTAATATTTTGAAAATTAAT-A--AA-ACATTTAAAAACTAAATCTATTTAT
65 TAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTCC
* * *
9248921 GAAAACAGTTTAAATAGTTATGACTATTTTG-ACAGTTATCTATCTT-AAATCA
130 GAACA-AGTTCAAATAGTTATGACTA-TTTGAACAATTATCTAT-TTCAAATCA
* * * * *
9248973 TTATGATC-TTTATTTTGTCATAAAACAATTGTTTCTTTTCATACATGCTTATTCGAATTAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * *
9249037 AATACTAATTTAATAACA-TCCAAAAATTAATATGTAAGAGATTTAAAAAAATAAATATGTTTGC
66 AATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATATGTTT-C
* ** * * *
9249101 CGAACCAGTTCAAATAGTTAAAACTATTAGAACAGTTATCTATTTTAAATCA
129 CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * * **
9249153 TTCTAACC-TTTGTTTAGTCATAAAACAATTATTTCAATTCATATAAGCTTATTTAAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * * * *
9249217 AATACTAATTTATTAACATTTGAGAATTTAATGAGTAAGAGATTTAAAAATATAAATCTGTTTAC
66 AATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA-ATAAATATGTTT-C
** * *
9249282 TAAACAA-TTCAAATAGATT-TGACTATTTGAACAATTTTTTATTT-AAAGTCA
129 CGAACAAGTTCAAATAG-TTATGACTATTTGAACAATTATCTATTTCAAA-TCA
* * * * * * *
9249333 TTATGACCTTTTATTTTGTAATAAAACAATTGTTTCGACTCATAAAAACTTATACGAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * * * * * **
9249398 AATATTATTTTACTAATATTTCAAAAATTAATAAGTAAGATATTTAGAAACTAAAGT-TTTTTTT
66 AATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAA-TATGTTTCC
* * * * * * *
9249462 AAACCAGTTCAAATAGTTAGGACTATTTAAACAAATATCAATCTCAAAT-A
130 GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* *
9249512 GTTTATGATC-TTTGTTTTCTCATAAAACAATT
1 --TTATGACCTTTTGTTTTGTCATAAAACAATT
9249544 ATTAATAATT
Statistics
Matches: 1449, Mismatches: 308, Indels: 134
0.77 0.16 0.07
Matches are distributed among these distances:
170 30 0.02
171 56 0.04
172 7 0.00
173 30 0.02
174 13 0.01
175 15 0.01
176 32 0.02
177 127 0.09
178 16 0.01
179 110 0.08
180 315 0.22
181 426 0.29
182 240 0.17
183 28 0.02
184 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (180 bp):
TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
AATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATATGTTTCCG
AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
Found at i:9249748 original size:13 final size:13
Alignment explanation
Indices: 9249724--9249764 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
9249714 AAATATTGAT
9249724 TATTAGATAATTAA
1 TATTA-ATAATTAA
9249738 TATTAATAATTAA
1 TATTAATAATTAA
*
9249751 TTTTAAT-ATTAA
1 TATTAATAATTAA
9249763 TA
1 TA
9249765 ATCATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 6 0.24
13 14 0.56
14 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (13 bp):
TATTAATAATTAA
Found at i:9249749 original size:21 final size:20
Alignment explanation
Indices: 9249704--9249766 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
9249694 TTATTGTTTT
* * *
9249704 ATTATATAATAAATATTGATT
1 ATTA-ATAATTAATATTAATA
9249725 ATTAGATAATTAATATTAATA
1 ATTA-ATAATTAATATTAATA
*
9249746 ATTAAT-TTTAATATTAATA
1 ATTAATAATTAATATTAATA
9249765 AT
1 AT
9249767 CATTATTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 14 0.38
20 2 0.05
21 21 0.57
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (20 bp):
ATTAATAATTAATATTAATA
Found at i:9249775 original size:19 final size:20
Alignment explanation
Indices: 9249733--9249776 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
9249723 TTATTAGATA
9249733 ATTAATATTAATAATTAATT
1 ATTAATATTAATAATTAATT
*
9249753 -TTAATATTAATAA-TCATT
1 ATTAATATTAATAATTAATT
9249771 ATTAAT
1 ATTAAT
9249777 TGATTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAATATTAATAATTAATT
Found at i:9249784 original size:11 final size:10
Alignment explanation
Indices: 9249733--9249797 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
9249723 TTATTAGATA
9249733 ATTAA-TATT
1 ATTAATTATT
*
9249742 AATAATTAATT
1 ATTAATT-ATT
9249753 -TTAA-TATT
1 ATTAATTATT
* *
9249761 AATAATCATT
1 ATTAATTATT
9249771 ATTAATTGATT
1 ATTAATT-ATT
9249782 ATTTAATTATT
1 A-TTAATTATT
9249793 ATTAA
1 ATTAA
9249798 GCTCAAATAG
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
8 3 0.07
9 8 0.18
10 16 0.36
11 11 0.25
12 6 0.14
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (10 bp):
ATTAATTATT
Found at i:9250283 original size:176 final size:177
Alignment explanation
Indices: 9249800--9251308 Score: 1087
Period size: 181 Copynumber: 8.4 Consensus size: 177
9249790 ATTATTAAGC
* * * * **
9249800 TCAAATAGTTATAACTATTTCAACAATTTTTTATTTTTAAT-AGTTATGATCTTTTGTTTTGTCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGATCTTTTGTTTTGTCA
* * * * *
9249864 TAAAATAATT-ATTTCTATTCATACAAGTTTATTCAAAATAAAATAATACTACTTTATTAATTTT
65 TAAAATAATTGTTTTCT-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT
* * * *
9249928 TTGCAAATTAATAGGTACGAGATCTAAAAAATAAATTTATTTACCGAACAAGT
129 TTGAAAATTAATA---A-GAGATTTAAAAAATAAATCTGTTTACCGAACAAGT
* * * * **
9249981 TCAAATAGTCATGTCCATTAGAACAATTATCTATTTCAAATTGTTATGA-CGTTTTGTTTTGTCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATC-TTTTGTTTTGTCA
* * * * ** *
9250045 TAAAA-CATTG-TTTCTGTTCATACATA-ATTATTCAAAATAAATTAATTTTGATTTATTAATAT
65 TAAAATAATTGTTTTCT-TTCATACA-AGCTTATTCGAAATAAAATAATACTAATTTATTAATAT
* * * ** *
9250107 TTTGAAAATTAATAAGAGATTTAAAAACTAAATCTATCTACTAAACCAGT
128 TTTGAAAATTAATAAGAGATTTAAAAAATAAATCTGTTTACCGAACAAGT
* * * *
9250157 TCAAATAGTTATGACTATTTGAACAATGATCTATCTCAAATCATAATGATC-TTTATTTTGTCAT
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTGTTTTGTCAT
* * * * * * *
9250221 ACAACAACTGTTTTCTTTCATACAAGCTTATTCGAATTAAAATGATGCTAATTTAATAATA-TTT
66 AAAATAATTGTTTTCTTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTT
* * *
9250285 CAACAATTAATAAGAGATTTAAAAAATAAATATG-TTACCCGAACTAGT
131 GAA-AATTAATAAGAGATTTAAAAAATAAATCTGTTTA-CCGAACAAGT
* ** * * * *
9250333 TCAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATTCT-ATCCTTTTGTTTAGTGA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAT-CTTTTGTTTTGTCA
* * * * * *
9250397 TAAAATAATT-ATTTCAGTTCATACAAGCTTGTT-TAGAATAAAATGATACTAATTTATTAACAT
65 TAAAATAATTGTTTTC-TTTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATAT
*** * * * *
9250460 TCAAAAAATTAAAGCAAAAGATTTAAAAAAAATAAATCTCTTTACCGAACAATT
128 TTTGAAAATT-AA-TAAGAGATTT--AAAAAATAAATCTGTTTACCGAACAAGT
* * * * * * * *
9250514 TCAAATAGATATGACTATTTAAACAATTATCTGTATAAAATTATTTTGA-CATTTTGTTTTATCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATC-TTTTGTTTTGTCA
** * * * *
9250578 TAAAATAATTG-TTTCAGCTAATAAAAACTTA-TCTGAAATAAAATAATACTACTTTATTAATAT
65 TAAAATAATTGTTTTC-TTTCATACAAGCTTATTC-GAAATAAAATAATACTAATTTATTAATAT
** * * * ** * **
9250641 TTCAAAAATTATTAAGCAAGAGATTTAAAAACTAAAACTGTTTTTCAAAGTAGT
128 TT-TGAAA--ATTAA-TAAGAGATTTAAAAAATAAATCTGTTTACCGAACAAGT
* * *
9250695 TCTAATAGTTATGACTATTTGAACAAATAT-TAATCTCAAATCATTATGATC-TTTGTTTTGTCA
1 TCAAATAGTTATGACTATTTGAACAATTATCT-ATTTCAAATCATTATGATCTTTTGTTTTGTCA
* * * * *
9250758 TGAAATAATTGTTTT-TATCATATAAGCTTATTCG-GATAAAAATAATACTAATTTAATAATATT
65 TAAAATAATTGTTTTCTTTCATACAAGCTTATTCGAAAT-AAAATAATACTAATTTATTAATATT
* *
9250821 TTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTGCC-AATC-AGT
129 TTGAAAA-T--TAA-TAAGAGATTTAAAAAATAAATCTGTTTACCGAA-CAAGT
* * * * ** * **
9250873 TCAAATAGTTAAGATTATTAGAATAATTATCTATTTCAAATTGTTCTGA-CATTTTGTTTAATCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATC-TTTTGTTTTGTCA
* * *
9250937 TAAAATAATTG-TTTCAGTTCATACAAGCTTATTCGAAAGAAAATAATACTAATTTATTAA-CTT
65 TAAAATAATTGTTTTC-TTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT
* * **
9251000 TTGAAAGATTAATAAGTAGGATATTTGAAAAACTAAATTTGTTTATTGAACAAGT
129 TTGAAA-ATTAATAAG-A-G--ATTT-AAAAAATAAATCTGTTTACCGAACAAGT
* ** * * *
9251055 TCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATTGTTGTAAAT-TTTTGTTTTATCA
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT-GATCTTTTGTTTTGTCA
* ** * * * * * * *
9251119 TAAAACAATTGTTTTAGTTCACAAAAGTTTATCCAAAATAAAATAATACTACTTTTCTTAATATT
65 TAAAATAATTGTTTTCTTTCATACAAGCTTATTCGAAATAAAATAATACTA-ATTTATTAATATT
* ** ** *
9251184 TTGAAAA-T--TAAGAGATTTAAAAAATAAAACAATTTATTG-ACTTAGT
129 TTGAAAATTAATAAGAGATTTAAAAAATAAATCTGTTTACCGAAC-AAGT
* * * * * **
9251230 TTAAATAATTATGACCATTTGAACAATTATCTATTTCAAATCATTATTACCTTTCATTTTGTCAT
1 TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTGTTTTGTCAT
**
9251295 AAAGCAATTGTTTT
66 AAAATAATTGTTTT
9251309 TCAACGTACA
Statistics
Matches: 1056, Mismatches: 214, Indels: 122
0.76 0.15 0.09
Matches are distributed among these distances:
174 3 0.00
175 108 0.10
176 193 0.18
177 70 0.07
178 57 0.05
179 102 0.10
180 130 0.12
181 249 0.24
182 109 0.10
183 24 0.02
184 11 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (177 bp):
TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGATCTTTTGTTTTGTCAT
AAAATAATTGTTTTCTTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTT
GAAAATTAATAAGAGATTTAAAAAATAAATCTGTTTACCGAACAAGT
Found at i:9251508 original size:16 final size:17
Alignment explanation
Indices: 9251476--9251508 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9251466 AATAAGTTCA
9251476 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
9251494 AATAATTAT-CTATTT
1 AATAATTATACTATTT
9251509 TAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:9251892 original size:16 final size:16
Alignment explanation
Indices: 9251871--9251901 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9251861 ATTAAAAGAT
9251871 TTAATCTACTTGATTA
1 TTAATCTACTTGATTA
*
9251887 TTAATCTATTTGATT
1 TTAATCTACTTGATT
9251902 TTTATTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.55
Consensus pattern (16 bp):
TTAATCTACTTGATTA
Found at i:9253033 original size:180 final size:179
Alignment explanation
Indices: 9252789--9253292 Score: 527
Period size: 176 Copynumber: 2.8 Consensus size: 179
9252779 AATCCTTAGA
* * * * * * **
9252789 ATATTAGTAAATTTATATTATTTT-ATTCAAAATAAGCTTGTATGAACGTAAACAATTATTTTAT
1 ATATTAATAAATTAATATTATTTTAATT-TAAATAAGCCTATATAAACAAAAACAATTATTTTAT
* * *
9252853 GATAAAATAAAAGGTCTTAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTAAAC
65 GATAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAAC
* * * *
9252918 TTGTTCGGTAAACAGATTCATTTTTTAAATCTCTTACTCATTAATTTTTTGA-
130 TTATTCGATAAACAGATT--TTTTTTAAATCTCTTACTCATTAA-TTATCGAT
* * * *** *
9252970 ATATTAATAAGTTAGTATTGTTTT-ATTTCAAATAAGCCTATATAAATTGATACAATT-TTTTAT
1 ATATTAATAAATTAATATTATTTTAATTT-AAATAAGCCTATATAAACAAAAACAATTATTTTAT
* * * ** * * * * *
9253033 GATGAAACAAAAGATCAAAACAATTTGAAATAAATAATTATTTAAATAGTTATTACTATTTAAAT
65 GATAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAAC
* * *
9253098 TTATTTGATAAAC--A-TTTTTTTAAATCTTTTACTTATTAATTATCGAT
130 TTATTCGATAAACAGATTTTTTTTAAATCTCTTACTCATTAATTATCGAT
* * * * *
9253145 ATATTAATAAATTAATATTATTTTAATTTAAATAAGCTTTTATGAACAAAAATAATTGTTTTATG
1 ATATTAATAAATTAATATTATTTTAATTTAAATAAGCCTATATAAACAAAAACAATTATTTTATG
* *
9253210 AGAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACT
66 ATAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACT
*
9253275 TATTCGATAAATAGATTT
131 TATTCGATAAACAGATTT
9253293 GAAATAAGTT
Statistics
Matches: 258, Mismatches: 58, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
174 5 0.02
175 63 0.24
176 74 0.29
177 1 0.00
178 2 0.01
179 2 0.01
180 68 0.26
181 43 0.17
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (179 bp):
ATATTAATAAATTAATATTATTTTAATTTAAATAAGCCTATATAAACAAAAACAATTATTTTATG
ATAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACT
TATTCGATAAACAGATTTTTTTTAAATCTCTTACTCATTAATTATCGAT
Found at i:9253258 original size:176 final size:175
Alignment explanation
Indices: 9252755--9253285 Score: 559
Period size: 180 Copynumber: 3.0 Consensus size: 175
9252745 TAATATAGAT
* * *
9252755 TTATTTTTTAAAT-TTTTACTTATTAATCCTTAGAATATTAGTAAATTTATATTATTTTATTCAA
1 TTATTTTTTAAATCTTTTACTTATTAAT--TTAGAATATTAATAAATTAATATTATTTTATT-TA
* ** * * *
9252819 AATAAGCTTGTATGAACGTAAACAATTATTTTATGATAAAATAAAAGGTCTTAATGATTTGAAAT
63 AATAAGCTTATATGAACAAAAACAATT-TTTTATGAGAAAACAAAAGGTCATAATGATTTGAAAT
* * *
9252884 AGATAATTGTTCAAATAGTCATAACTATTTAAACTTGTTCGGTAAACAGA
127 AAATAATTGTTCAAATAGTCATAACTATTTAAACTTATTCGATAAACA-A
* * * * * *
9252934 TTCATTTTTTAAATCTCTTACTCATTAATTTTTTGAATATTAATAAGTTAGTATTGTTTTATTTC
1 TT-ATTTTTTAAATCTTTTACTTATTAA--TTTAGAATATTAATAAATTAATATTATTTTATTT-
* * *** * * * **
9252999 AAATAAGCCTATATAAATTGATACAATTTTTTATGATG-AAACAAAAGATCAAAACAATTTGAAA
62 AAATAAGCTTATATGAACAAAAACAATTTTTTATGA-GAAAACAAAAGGTCATAATGATTTGAAA
* * * * * *
9253063 TAAATAATTATTTAAATAGTTATTACTATTTAAATTTATTTGATAAAC-A
126 TAAATAATTGTTCAAATAGTCATAACTATTTAAACTTATTCGATAAACAA
*
9253112 -T-TTTTTTAAATCTTTTACTTATTAATTATCGATATATTAATAAATTAATATTATTTTAATTTA
1 TTATTTTTTAAATCTTTTACTTATTAATT-TAGA-ATATTAATAAATTAATATTATTTT-ATTTA
* *
9253175 AATAAGCTTTTATGAACAAAAATAATTGTTTTATGAGAAAACAAAAGGTCATAATGATTTGAAAT
63 AATAAGCTTATATGAACAAAAACAATT-TTTTATGAGAAAACAAAAGGTCATAATGATTTGAAAT
*
9253240 AAATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGATAAA
127 AAATAATTGTTCAAATAGTCATAACTATTTAAACTTATTCGATAAA
9253286 TAGATTTGAA
Statistics
Matches: 284, Mismatches: 57, Indels: 25
0.78 0.16 0.07
Matches are distributed among these distances:
173 2 0.01
174 3 0.01
175 64 0.23
176 74 0.26
177 1 0.00
178 1 0.00
179 2 0.01
180 78 0.27
181 58 0.20
183 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (175 bp):
TTATTTTTTAAATCTTTTACTTATTAATTTAGAATATTAATAAATTAATATTATTTTATTTAAAT
AAGCTTATATGAACAAAAACAATTTTTTATGAGAAAACAAAAGGTCATAATGATTTGAAATAAAT
AATTGTTCAAATAGTCATAACTATTTAAACTTATTCGATAAACAA
Found at i:9254278 original size:9 final size:10
Alignment explanation
Indices: 9254264--9254314 Score: 54
Period size: 9 Copynumber: 5.1 Consensus size: 10
9254254 TTAATTGGAT
9254264 TATTAAAT-A
1 TATTAAATAA
9254273 TATT-AATAA
1 TATTAAATAA
9254282 TATTAATATAA
1 TATTAA-ATAA
9254293 TATTATTAATAA
1 TATTA--AATAA
9254305 TATT-AATAA
1 TATTAAATAA
9254314 T
1 T
9254315 TTATTTACCT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
8 3 0.08
9 15 0.41
10 1 0.03
11 9 0.24
12 8 0.22
13 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTAAATAA
Found at i:9254319 original size:23 final size:23
Alignment explanation
Indices: 9254269--9254312 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
9254259 TGGATTATTA
9254269 AATA-TATTAATAATATTAATAT
1 AATATTATTAATAATATTAATAT
9254291 AATATTATTAATAATATTAATA
1 AATATTATTAATAATATTAATA
9254313 ATTTATTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AATATTATTAATAATATTAATAT
Found at i:9254362 original size:12 final size:11
Alignment explanation
Indices: 9254345--9254383 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
9254335 TATTCATAAT
9254345 ATTAATTATTA
1 ATTAATTATTA
*
9254356 CATTAATTATAAA
1 -ATTAATTAT-TA
9254369 ATTAATTATTA
1 ATTAATTATTA
9254380 ATTA
1 ATTA
9254384 TATATTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 5 0.21
12 18 0.75
13 1 0.04
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (11 bp):
ATTAATTATTA
Found at i:9255352 original size:18 final size:19
Alignment explanation
Indices: 9255318--9255384 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
9255308 AATATATATT
* *
9255318 AATAATATTAGTAATTATA
1 AATATTATTATTAATTATA
9255337 AATATTATT-TTAATTAATAA
1 AATATTATTATTAATT-AT-A
9255357 TAATATATATTAATTAATTA-A
1 -AATAT-TATT-ATTAATTATA
9255378 AATATTA
1 AATATTA
9255385 AAAAATTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
18 5 0.12
19 12 0.30
20 6 0.15
21 6 0.15
22 4 0.10
23 1 0.03
24 6 0.15
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (19 bp):
AATATTATTATTAATTATA
Found at i:9255352 original size:25 final size:24
Alignment explanation
Indices: 9255301--9255386 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 24
9255291 TCCTAATATA
* * *
9255301 TAATGATAATATATATTAATAATAT
1 TAATAATAATAAATATTAATTA-AT
* * *
9255326 TAGTAATTATAAATATTATTTTAAT
1 TAATAATAATAAATATTA-ATTAAT
*
9255351 TAATAATAATATATATTAATTAAT
1 TAATAATAATAAATATTAATTAAT
*
9255375 TAA-AATATTAAA
1 TAATAATAATAAA
9255387 AAATTATAAG
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
23 7 0.15
24 8 0.17
25 31 0.65
26 2 0.04
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
TAATAATAATAAATATTAATTAAT
Found at i:9255370 original size:16 final size:16
Alignment explanation
Indices: 9255296--9255370 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 16
9255286 AACTATCCTA
*
9255296 ATATA-TAATGATAAT
1 ATATATTAATAATAAT
*
9255311 ATATATTAATAATATT
1 ATATATTAATAATAAT
*
9255327 AGTA-ATT-ATAAATATT
1 A-TATATTAAT-AATAAT
*
9255343 ATTTTAATTAATAATAAT
1 A-TAT-ATTAATAATAAT
9255361 ATATATTAAT
1 ATATATTAAT
9255371 TAATTAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
15 7 0.15
16 26 0.54
17 4 0.08
18 9 0.19
19 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATATATTAATAATAAT
Found at i:9255412 original size:21 final size:21
Alignment explanation
Indices: 9255367--9255427 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
9255357 TAATATATAT
**
9255367 TAATTAATTAAAATATTAA-AA
1 TAATTAA-TAAAATACAAATAA
9255388 -AATT-ATAAGAATACAAATAA
1 TAATTAATAA-AATACAAATAA
*
9255408 TAATTAATTAAATACAAATA
1 TAATTAATAAAATACAAATA
9255428 TTTATTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
18 3 0.09
19 7 0.21
20 6 0.18
21 14 0.42
22 3 0.09
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (21 bp):
TAATTAATAAAATACAAATAA
Found at i:9255561 original size:19 final size:19
Alignment explanation
Indices: 9255534--9255575 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
9255524 TTAATCCAAG
* *
9255534 TATTGTAATAAAATTATAA
1 TATTATAATAAAAATATAA
*
9255553 TATTATAATAAAAATATTA
1 TATTATAATAAAAATATAA
9255572 TATT
1 TATT
9255576 GTTTAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TATTATAATAAAAATATAA
Found at i:9256383 original size:166 final size:166
Alignment explanation
Indices: 9256087--9256416 Score: 452
Period size: 166 Copynumber: 2.0 Consensus size: 166
9256077 AAAAGATTTT
*
9256087 AAAAAAATAAGTTTACCAAGCAAGTTCAAATAGTCATGACTATTTGAATAATTATCTACTTCAAA
1 AAAAAAATAAGTTTACCAAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTACTTCAAA
* ** * * *
9256152 TCATTGTAACATTTTGTTTTGTAATAAAACAATTGTTTCAATTCATGTTAGCTTATTTGAAATAA
66 ACATTACAACATTTTGTTTTGTAATAAAACAATTGGTTCAATTCATGTAAGCTTATTTCAAATAA
9256217 AATAATACT-AATTTATTAATATTCC-AAAATTAAAA
131 AATAATA-TAAATTTATTAATATTCCAAAAATTAAAA
* * * *
9256252 AAAATAAATATGTTTATCAAACAAGTTCAAATAGTTATGACTATCTT-AATAATTATCTATTTCA
1 AAAA-AAATAAGTTTACCAAACAAGTTCAAATAGTCATGACTAT-TTGAATAATTATCTACTTCA
* * * *
9256316 AAACATTACAACCTTTTGTTTTGTCATAAAATAATTGGTTCTATTCAT-TCAAGCTTATTTCAAA
64 AAACATTACAACATTTTGTTTTGTAATAAAACAATTGGTTCAATTCATGT-AAGCTTATTTCAAA
*
9256380 TAAAATAATATAAATTTATTAATGTTCCAAAAATTAA
128 TAAAATAATATAAATTTATTAATATTCCAAAAATTAA
9256417 TAAGTAAAAA
Statistics
Matches: 144, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
165 6 0.04
166 128 0.89
167 10 0.07
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (166 bp):
AAAAAAATAAGTTTACCAAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTACTTCAAA
ACATTACAACATTTTGTTTTGTAATAAAACAATTGGTTCAATTCATGTAAGCTTATTTCAAATAA
AATAATATAAATTTATTAATATTCCAAAAATTAAAA
Found at i:9257180 original size:181 final size:180
Alignment explanation
Indices: 9256462--9257617 Score: 827
Period size: 181 Copynumber: 6.4 Consensus size: 180
9256452 TTAATGTTCC
** * * *
9256462 AAAACCAATTGTTTCTA-TTCATACAAAATTATTCAGAATAAAATAATACTATTTTATTACTATT
1 AAAA-CAATTGTTTC-AGTTCATACAAGCTTATTGA-AATAAAATAATACTAATTTATTAATATT
** * * * * *
9256526 TTGAAAATTAAT-A---AGAGATTTAAAAACT-AATCTCTTTATCGAACCAGTTCAAATAGTTAT
63 TCAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTTAAATAGTTAT
* * * * * *
9256586 GACTATTTGAACAATTATCTATCTCCAATTATTATG-A-TTTTTGTTTTGTCCT
128 GGCTATTTGAACAATTATCTATTTCAAATCATTA-GAACCTTTTGTTTTGTCAT
* * * * * * * * *
9256638 AAAACATTTAATTTCTA-TTCA-ACAAGCTTATTTAGAGTAAAATATTGCTAAATTAATAACA-T
1 AAAACAATT-GTTTC-AGTTCATACAAGCTTATTGA-AATAAAATAATACTAATTTATTAATATT
* * * * * *
9256700 TCTAAACATTAATAAGTAAG-GATTTAAAAAATAAATATGTTT-GCTGAATCAATTCAAATAGTT
63 TC-AAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATC-GAATCAGTTTAAATAGTT
* * * ** ** * *
9256763 AAGACTATTAGAACGGTTATCTATTTCAAATTGTTTTG-ACCTTTTGTTTAGTCAT
126 ATGGCTATTTGAACAATTATCTATTTCAAA-TCATTAGAACCTTTTGTTTTGTCAT
* * ** * * * *
9256818 AAAATAATTGCTTCAACTCATACATGCTTGTTCAAAATAAAATAATACTAATTTATTAACATTT-
1 AAAACAATTGTTTCAGTTCATACAAGCTTATT-GAAATAAAATAATACTAATTTATTAATATTTC
* * * * * * * * * * *
9256882 AGAAAATTATTAAG-TAAAAAATTAGAAAA-AAATCTATTTACCGAA-CAAGTTCAAATATTTTT
65 A-AAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATC-AGTTTAAATAGTTAT
* * * * *
9256944 GACTATTTGAACAATTATCTATTTAAAATCATTATG-ACCTTATATTTTATCAT
128 GGCTATTTGAACAATTATCTATTTCAAATCATTA-GAACCTTTTGTTTTGTCAT
* * *
9256997 AAAACAATTGTTTCAGTTCATAAAAGCTTATCTGAAATAAAATAATATTACTTTATTAATATTAT
1 AAAACAATTGTTTCAGTTCATACAAGCTTAT-TGAAATAAAATAATACTAATTTATTAATATT-T
* * *** * *
9257062 -AAAAATTGATAAGTTAGAGATTTAAAACATAAATCAATTTATCAAATCAGTTTAAATAATTATG
64 CAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTTAAATAGTTATG
* *
9257126 GCCATTTAAACAATTATCTATTTCAAATCATTAGGAA-CTTTTGTTTTGTCAT
129 GCTATTTGAACAATTATCTATTTCAAATCATTA-GAACCTTTTGTTTTGTCAT
* * * *
9257178 AAAACAATTGTTTTTCA--TCATACAAGCCTATTCAGAATAAAATAATACAAATTTATTTATATT
1 AAAACAATTG--TTTCAGTTCATACAAGCTTATTGA-AATAAAATAATACTAATTTATTAATATT
* * *
9257241 TGAAAAATTAATAAG-TAGGAGATTTAAAAAATAAATTTGTTTATCGAATAAGTTCAAATAGTTA
63 TCAAAAATTAATAAGTTA-GAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTTAAATAGTTA
* * * * *
9257305 TGACTATTCGAACAATTATATATTTTC-AATCGTTATAACCTTTTGTTTTGTCAT
127 TGGCTATTTGAACAATTATCTA-TTTCAAATCATTAGAACCTTTTGTTTTGTCAT
* * * * *
9257359 AAAACAATTATTT-ATCTTCATACAAGCTTATTCAAAATAAAATAATACTAATATAGTAATATTA
1 AAAACAATTGTTTCA-GTTCATACAAGCTTATT-GAAATAAAATAATACTAATTTATTAATATT-
* * * * * * * * * * *
9257423 T-GAAATTTAATAACTAATAGATTTAAAATATAAATTTGCTTACCGAACCAATTTAAATAGTTAA
63 TCAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTTAAATAGTTAT
* * * * *
9257487 GGCTATATGAATAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCGT
128 GGCTATTTGAACAATTATCTATTTCAAATCATTAGAACCTTTTGTTTTGTCAT
* ** * * * *
9257540 AAAACAAATGTTTTTGTTCATATAAGTTTTTTTGAAATAAAATAATATTAATTTATTAATATTTC
1 AAAACAATTGTTTCAGTTCATACAAG-CTTATTGAAATAAAATAATACTAATTTATTAATATTTC
9257605 AAAAATTAATAAG
65 AAAAATTAATAAG
9257618 AGATTTAATA
Statistics
Matches: 771, Mismatches: 167, Indels: 79
0.76 0.16 0.08
Matches are distributed among these distances:
174 2 0.00
175 41 0.05
176 15 0.02
178 18 0.02
179 182 0.24
180 96 0.12
181 399 0.52
182 13 0.02
183 5 0.01
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (180 bp):
AAAACAATTGTTTCAGTTCATACAAGCTTATTGAAATAAAATAATACTAATTTATTAATATTTCA
AAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTTAAATAGTTATGGC
TATTTGAACAATTATCTATTTCAAATCATTAGAACCTTTTGTTTTGTCAT
Found at i:9257447 original size:362 final size:356
Alignment explanation
Indices: 9256462--9257687 Score: 1074
Period size: 362 Copynumber: 3.4 Consensus size: 356
9256452 TTAATGTTCC
* ** * *
9256462 AAAACCAATTGTTTCT-ATTCATACAAAATTATTCAGAATAAAATAATACTATTTTATTACTATT
1 AAAA-CAATTGTTTTTCA-TCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATA-T
* * *
9256526 TTG-AAAATTAAT-A--AGAGATTTAAAAACT-AATCTCTTTATCGAACCAGTTCAAATAGTTAT
63 TTGAAAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTAT
* * * * * *
9256586 GACTATTTGAACAATTATCTATCTCCAATTATTATGA-TTTTTGTTTTGTCCTAAAACATTTAAT
128 GACTATTTGAACAATTATCTATTTACAATCATTATGACCTTTTGTTTTGTCATAAAACAATT-AT
* * * * * * * *
9256650 TTCTATTCA-ACAAGCTTATTTAGAGTAAAATATTGCTAA-ATTAATAACATTCTAAACATTAAT
192 TTATATTCATACAAGCTTATTCAAAATAAAATAATACTAATA-TAATAATATTATAAA-ATTAAT
* * *
9256713 AAGTAAGGATTTAAAAAATAAATATGTT-TGCTGAATCAATTCAAATAGTTAAGACTA-TTAGAA
255 AAGTAAAGATTTAAAAAATAAATAT-TTAT-C-GAATCAATTTAAATAGTTAAGGCTATTTA-AA
** * * * *
9256776 CGGTTATCTATTTCAAATTGTTTTGACCTTTTGTTTAGTCAT
316 CAATTATCTATTTCAAATCG-TTAGAACTTTTGTTTTGTCAT
* * * * * *
9256818 AAAATAATTG--CTTCAACTCATACATGCTTGTTCAAAATAAAATAATACTAATTTATTAACATT
1 AAAACAATTGTTTTTC-A-TCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATT
* * * * * * * *
9256881 T-AGAAAATTATTAAGTAAAAAATTAGAAAA-AAATCTATTTACCGAACAAGTTCAAATATTTTT
64 TGA-AAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTAT
* * * * *
9256944 GACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAACAATTGTT
128 GACTATTTGAACAATTATCTATTTACAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATT
* * * * * * * *
9257009 TCA-GTTCATAAAAGCTTA-TCTGAAATAAAATAATATTACTTTATTAATATTATAAAAATTGAT
193 T-ATATTCATACAAGCTTATTC-AAAATAAAATAATACTAATATAATAATATTAT-AAAATTAAT
* * * * * * *
9257072 AAGTTAGAGATTTAAAACATAAATCAATTTATCAAATCAGTTTAAATAATTATGGCCATTTAAAC
255 AAG-TAAAGATTTAAAAAATAAAT--ATTTATCGAATCAATTTAAATAGTTAAGGCTATTTAAAC
*
9257137 AATTATCTATTTCAAATCATTAGGAACTTTTGTTTTGTCAT
317 AATTATCTATTTCAAATCGTTA-GAACTTTTGTTTTGTCAT
* * *
9257178 AAAACAATTGTTTTTCATCATACAAGCCTATTCAGAATAAAATAATACAAATTTATTTATATTTG
1 AAAACAATTGTTTTTCATCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTG
* * *
9257243 AAAAATTAATAAGTAGGAGATTTAAAAAATAAATTTGTTTATCGAATAAGTTCAAATAGTTATGA
66 AAAAATTAATAAGTA-GAGATTTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGA
* * * * *
9257308 CTATTCGAACAATTATATATTTTCAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTA
130 CTATTTGAACAATTATCTATTTACAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTA
* * * *
9257373 TCTTCATACAAGCTTATTCAAAATAAAATAATACTAATATAGTAATATTATGAAATTTAATAACT
195 TATTCATACAAGCTTATTCAAAATAAAATAATACTAATATAATAATATTAT-AAAATTAATAAGT
* * * * * * *
9257438 AATAGATTTAAAATATAAATTTGCTTACCGAACCAATTTAAATAGTTAAGGCTATATGAATAATT
259 AA-AGATTTAAAAAATAAATAT--TTATCGAATCAATTTAAATAGTTAAGGCTATTTAAACAATT
* *
9257503 ATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCGT
321 ATCTATTTCAAATCGTTAGAA-CTTTTGTTTTGTCAT
* ** * * ** *
9257540 AAAACAAATGTTTTTGTTCATATAAG-TTTTTTTGAAATAAAATAATATTAATTTATTAATATTT
1 AAAACAATTGTTTTTCATCATACAAGCTTATTCAG-AATAAAATAATACTAATTTATTAATATTT
* * * * * *
9257604 CAAAAATTAAT-A--AGAGATTTAATAAATAAATCTATTTA-CCATACTAGTTCAATTAGTTATA
65 GAAAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGA-ACAAGTTCAAATAGTTATG
* * *
9257665 ACAATTTGAACATTTATTTATTT
129 ACTATTTGAACAATTATCTATTT
9257688 CAAATCGTAC
Statistics
Matches: 689, Mismatches: 148, Indels: 64
0.76 0.16 0.07
Matches are distributed among these distances:
353 1 0.00
354 3 0.00
355 50 0.07
356 5 0.01
357 2 0.00
358 133 0.19
359 57 0.08
360 135 0.20
361 27 0.04
362 274 0.40
363 2 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (356 bp):
AAAACAATTGTTTTTCATCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTG
AAAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGAC
TATTTGAACAATTATCTATTTACAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTAT
ATTCATACAAGCTTATTCAAAATAAAATAATACTAATATAATAATATTATAAAATTAATAAGTAA
AGATTTAAAAAATAAATATTTATCGAATCAATTTAAATAGTTAAGGCTATTTAAACAATTATCTA
TTTCAAATCGTTAGAACTTTTGTTTTGTCAT
Found at i:9257860 original size:20 final size:20
Alignment explanation
Indices: 9257837--9257874 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9257827 TTAAAATATT
9257837 TATTAATAATAAT-TTATAAA
1 TATTAATAA-AATATTATAAA
*
9257857 TATTTATAAAATATTATA
1 TATTAATAAAATATTATA
9257875 GGAAAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTAATAAAATATTATAAA
Found at i:9257868 original size:11 final size:11
Alignment explanation
Indices: 9257828--9257871 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 11
9257818 TGTAATGAAT
9257828 TAAAATATTTA
1 TAAAATATTTA
9257839 TTAATAATAATTTA
1 -TAA-AAT-ATTTA
9257853 T-AAATATTTA
1 TAAAATATTTA
9257863 TAAAATATT
1 TAAAATATT
9257872 ATAGGAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.21
11 10 0.34
12 4 0.14
13 4 0.14
14 5 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAAAATATTTA
Found at i:9257943 original size:6 final size:6
Alignment explanation
Indices: 9257926--9258017 Score: 54
Period size: 6 Copynumber: 15.8 Consensus size: 6
9257916 TAATACCTAA
* *
9257926 TAATAA TAATAT TAATAT TATTA- TAACTA- -AATAT TAATAT T-AT-T
1 TAATAT TAATAT TAATAT TAATAT TAA-TAT TAATAT TAATAT TAATAT
* * *
9257970 TATTAT TAATAT CAATAT TAATTAT TATTAAT TAAT-T CT-ATAT TAATA
1 TAATAT TAATAT TAATAT TAA-TAT TAAT-AT TAATAT -TAATAT TAATA
9258018 ATTTAATTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 20
0.70 0.09 0.21
Matches are distributed among these distances:
4 4 0.06
5 11 0.16
6 42 0.63
7 10 0.15
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (6 bp):
TAATAT
Found at i:9257980 original size:22 final size:21
Alignment explanation
Indices: 9257932--9258001 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 21
9257922 CTAATAATAA
*
9257932 TAATATTAATATTATTATAACT
1 TAATATTAATATTATTATTA-T
*
9257954 AAATATTAATATTATTTATTAT
1 TAATATTAATATTA-TTATTAT
*
9257976 TAATATCAATATTAATTATTAT
1 TAATATTAATATT-ATTATTAT
9257998 TAAT
1 TAAT
9258002 TAATTCTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 36 0.86
23 6 0.14
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATATTAATATTATTATTAT
Found at i:9258000 original size:10 final size:10
Alignment explanation
Indices: 9257958--9258036 Score: 54
Period size: 10 Copynumber: 7.5 Consensus size: 10
9257948 ATAACTAAAT
9257958 ATTAATATTA
1 ATTAATATTA
* *
9257968 TTTATTATTA
1 ATTAATATTA
9257978 ATATCAATATTA
1 AT-T-AATATTA
*
9257990 ATTATTATTA
1 ATTAATATTA
9258000 ATTAAT-TCTA
1 ATTAATAT-TA
9258010 TATTAATAATTTA
1 -ATTAAT-A-TTA
*
9258023 ATTAAAATT-
1 ATTAATATTA
9258032 ATTAA
1 ATTAA
9258037 CTGTTTAGTT
Statistics
Matches: 55, Mismatches: 7, Indels: 15
0.71 0.09 0.19
Matches are distributed among these distances:
9 6 0.11
10 24 0.44
11 9 0.16
12 13 0.24
13 2 0.04
14 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTAATATTA
Found at i:9258012 original size:25 final size:26
Alignment explanation
Indices: 9257933--9258022 Score: 77
Period size: 26 Copynumber: 3.6 Consensus size: 26
9257923 TAATAATAAT
9257933 AATATTAA-TA-TTATTA-TAACTA--
1 AATATTAATTATTTATTATTAA-TATC
9257955 AATATTAATATTATTTATTATTAATATC
1 AATATT-A-ATTATTTATTATTAATATC
9257983 AATATTAATTA-TTATTAATTAAT-TC
1 AATATTAATTATTTATT-ATTAATATC
* *
9258008 TATATTAATAATTTA
1 AATATTAATTATTTA
9258023 ATTAAAATTA
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
22 6 0.11
23 1 0.02
24 1 0.02
25 18 0.32
26 21 0.37
27 4 0.07
28 6 0.11
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (26 bp):
AATATTAATTATTTATTATTAATATC
Found at i:9258549 original size:182 final size:176
Alignment explanation
Indices: 9258051--9258688 Score: 435
Period size: 182 Copynumber: 3.6 Consensus size: 176
9258041 TTAGTTATCT
*
9258051 AAATAGTCATAACTATTTAAATTTGTTCAATAAATGAATTTATTTTTTCAAATCTT-TTGCTTAT
1 AAATAGTCATAACTATTTGAA-TTGTTCAATAAAT-AATTTATTTTTT-AAAT-TTCTT-CTTAT
** * * * * * * *
9258115 TAATTTTTTGAATGTTAATAAATTTAG-ATTATTTTATTCCAAATAACCATGTAAGATATAAAAC
61 TAATTTTTAAAATATTAA-AAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATA-AAAAC
* * *
9258179 AAATATTTTATGACTAAACATAAGATTGGAACGATTTGAAGTAGATAATTATTC
124 AAATATTTTATGACAAAACA-AAAATTGGAACGATTTGAACTAGATAATTATTC
* ** * * *
9258233 TAATAGTTTTAACTATTTGAATTGGTTCAGCA-AAAAAAGTTCTTTTTTAAA--TC-TCTTATTA
1 AAATAGTCATAACTATTTGAATT-GTTCA--ATAAATAATTTATTTTTTAAATTTCTTCTTATTA
** * ** * * *
9258294 AAATTTGAAATATTATTAAATTAGTATTATTTTTAATT-GAATAAGCTTCTATGATAAGAAATAA
63 ATTTTTAAAATATTAAAAAATTAGTATTA-TTTTATTTCGAATAAGCTTGTATGATAA-AAACAA
* * ** * * *
9258358 TTGTTTTATGACAAAACAAAAATCT-TCATGGTTTGAGACT-GATAATTGTTC
126 ATATTTTATGACAAAACAAAAAT-TGGAACGATTTGA-ACTAGATAATTATTC
*
9258409 AAATAGTCATAACTATTTGAACTAGTTTCAATAAATATATTTATTTTTTAAAATTTCTTACTTAT
1 AAATAGTCATAACTATTTGAA-TTG-TTCAATAAATA-ATTTATTTTTT-AAATTTCTT-CTTAT
* *
9258474 TAATTTTTAAAATATTAAAAAATTAGTAATATTTTATTTCGAATGAGCTTGTATGATCAAAAACA
61 TAATTTTTAAAATATTAAAAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAT-AAAAACA
* * *** * *
9258539 AATATTTTATGATAAAACAAAAGGTCATAACGATTTGAAAC-AAATAATCATTC
125 AATATTTTATGACAAAACAAAA-ATTGGAACGATTTG-AACTAGATAATTATTC
* * * * ** * *
9258592 AAATGGCCATAATTATTTTAAATTGATTCGGTAAACAAAATTA-TTTTTAAA--T-TTCTTATT-
1 AAATAGTCATAACTA-TTTGAATTG-TTCAATAAA-TAATTTATTTTTTAAATTTCTTCTTATTA
*
9258652 A-TTTTAGGAAATATTAATAAATTAGTATTATTTTATT
63 ATTTTTA--AAATATTAAAAAATTAGTATTATTTTATT
9258689 CCCTCTAAGC
Statistics
Matches: 355, Mismatches: 73, Indels: 61
0.73 0.15 0.12
Matches are distributed among these distances:
175 6 0.02
176 52 0.15
177 104 0.29
178 13 0.04
179 1 0.00
180 2 0.01
181 16 0.05
182 105 0.30
183 48 0.14
184 8 0.02
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (176 bp):
AAATAGTCATAACTATTTGAATTGTTCAATAAATAATTTATTTTTTAAATTTCTTCTTATTAATT
TTTAAAATATTAAAAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATAAAAACAAATATT
TTATGACAAAACAAAAATTGGAACGATTTGAACTAGATAATTATTC
Done.