Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 58 of 121
Found at i:9945245 original size:12 final size:12
Alignment explanation
Indices: 9945228--9945266 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 12
9945218 AAAAATAAAA
9945228 AAATAATATTAT
1 AAATAATATTAT
9945240 AAATAATATTAAATT
1 AAATAATATT--A-T
9945255 AAATAATATTAT
1 AAATAATATTAT
9945267 TTTATTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 11 0.46
13 1 0.04
14 1 0.04
15 11 0.46
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AAATAATATTAT
Found at i:9945257 original size:15 final size:13
Alignment explanation
Indices: 9945228--9945265 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
9945218 AAAAATAAAA
9945228 AAATAATATT-AT
1 AAATAATATTAAT
9945240 AAATAATATTAAATT
1 AAATAATATT-AA-T
9945255 AAATAATATTA
1 AAATAATATTA
9945266 TTTTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.43
14 2 0.09
15 11 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AAATAATATTAAT
Found at i:9948249 original size:18 final size:19
Alignment explanation
Indices: 9948221--9948261 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
9948211 CATTGTGGGG
9948221 AACTTGAAATCTCAATGGA
1 AACTTGAAATCTCAATGGA
9948240 AACTTG-AATCTCAATGGA
1 AACTTGAAATCTCAATGGA
9948258 AACT
1 AACT
9948262 ATAATTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (19 bp):
AACTTGAAATCTCAATGGA
Found at i:9949539 original size:21 final size:23
Alignment explanation
Indices: 9949495--9949539 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
9949485 CTTGGGACTT
9949495 AAAAATAGCCATTGAATGCATGAA
1 AAAAATAGCCATTGAATG-ATGAA
9949519 AAAAATAGCCATT-AATG-TGAA
1 AAAAATAGCCATTGAATGATGAA
9949540 TCCACCCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
23 4 0.19
24 13 0.62
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.22
Consensus pattern (23 bp):
AAAAATAGCCATTGAATGATGAA
Found at i:9950605 original size:25 final size:25
Alignment explanation
Indices: 9950558--9950606 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
9950548 TATATCGAAT
* *
9950558 AAGCACAATCAAACATATGCATATC
1 AAGCACAAGCAAACATATCCATATC
**
9950583 AAGCACAAGCAAATTTATCCATAT
1 AAGCACAAGCAAACATATCCATAT
9950607 GATATTTCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.47, C:0.22, G:0.08, T:0.22
Consensus pattern (25 bp):
AAGCACAAGCAAACATATCCATATC
Found at i:9959968 original size:27 final size:27
Alignment explanation
Indices: 9959926--9959979 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
9959916 AAAAAATAAG
*
9959926 GAAATTGAAAAAGATCCATGTGAAGAT
1 GAAATTGAAAAAGATCCAAGTGAAGAT
* *
9959953 GAAATTGAGAAGGATCCAAGTGAAGAT
1 GAAATTGAAAAAGATCCAAGTGAAGAT
9959980 TAGCTTGAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.46, C:0.07, G:0.26, T:0.20
Consensus pattern (27 bp):
GAAATTGAAAAAGATCCAAGTGAAGAT
Found at i:9963910 original size:23 final size:23
Alignment explanation
Indices: 9963880--9963924 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
9963870 GAAGAAGAAA
9963880 CTTGATGAAGCCAAAGGGTTTTG
1 CTTGATGAAGCCAAAGGGTTTTG
9963903 CTTGATGAAGCCAAAGGGTTTT
1 CTTGATGAAGCCAAAGGGTTTT
9963925 TTTTTAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (23 bp):
CTTGATGAAGCCAAAGGGTTTTG
Found at i:9963935 original size:23 final size:23
Alignment explanation
Indices: 9963880--9963941 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
9963870 GAAGAAGAAA
*
9963880 CTTGATGAAGCCAAAGGGTTTTG
1 CTTGAAGAAGCCAAAGGGTTTTG
* *
9963903 CTTGATGAAGCCAAAGGGTTTTT
1 CTTGAAGAAGCCAAAGGGTTTTG
* *
9963926 TTTTAAGAAGCCAAAG
1 CTTGAAGAAGCCAAAG
9963942 AATAGTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.31
Consensus pattern (23 bp):
CTTGAAGAAGCCAAAGGGTTTTG
Found at i:9964777 original size:56 final size:56
Alignment explanation
Indices: 9964685--9964874 Score: 175
Period size: 56 Copynumber: 3.4 Consensus size: 56
9964675 ATCTTATGCC
** * *
9964685 CCATCTCTATTTTGTGTTAAGGCCCCCAT-ATAAACATGTTCAATGTGCCCTGCGTG
1 CCATCTCTATTTTGTGTTAAGGCCCTTATGAT-AACATGTTCAAAGTGCCCTACGTG
* * * * * **
9964741 CCATCTCTATTTTGTGTTAAGACCCTTATGCTAACATGCTCAAAATGCCCTATGCA
1 CCATCTCTATTTTGTGTTAAGGCCCTTATGATAACATGTTCAAAGTGCCCTACGTG
* * ** * * * * *
9964797 CCCTCTTTATTTTGCATTAAGGCCCTTATGTTGACACGTTCAACGTGCCCTACATG
1 CCATCTCTATTTTGTGTTAAGGCCCTTATGATAACATGTTCAAAGTGCCCTACGTG
*
9964853 CCATCTCTATCTTGTGTTAAGG
1 CCATCTCTATTTTGTGTTAAGG
9964875 TTTCCATGTT
Statistics
Matches: 102, Mismatches: 31, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
56 101 0.99
57 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (56 bp):
CCATCTCTATTTTGTGTTAAGGCCCTTATGATAACATGTTCAAAGTGCCCTACGTG
Found at i:9971251 original size:267 final size:268
Alignment explanation
Indices: 9970740--9971257 Score: 779
Period size: 267 Copynumber: 1.9 Consensus size: 268
9970730 AAGTAAGTTC
* *
9970740 TTTGCTAATGAGTACCTCCTTATCCTTAAGCTAAATACTAGATTCAAGAAGGAATGTGTCTAAAG
1 TTTGCTAATGAGTACCTCCTTATCCTTAAACTAAATACTAGATTCAAGAAGAAATGTGTCTAAAG
* * ** *
9970805 GCTTAAGTGATCTATCTAATAATTTTACCTTATCAGTACATTTATCCATCTAATCTATTTTCACA
66 GCTTAAATGATCTATCTAATAAGTTTACCTTATCAACACATTTATCCATCTAATCCATTTTCACA
** * * * *
9970870 TAATTGGGTAAGTGATCTTTAAATAACTCAGGAAATGGCTTGAATGAAATGTAAAGCTCAACTTT
131 TAATTAAGTAAGTGATCTTCAAATAACTCAAGAAATAGCTTGAATGAAATATAAAGCTCAACTTT
* *
9970935 TTCTTAAATGCTATCCACTTTCTCAATTTCCCTAAATGATCCATTATCATCAAATTTCTAAACAC
196 TTATTAAATGCTATCAACTTTCTCAATTTCCCTAAATGATCCATTATCATCAAATTTCTAAACAC
9971000 ATAAGTCT
261 ATAAGTCT
* * *
9971008 TTTGCTAATGAGTTCCTCCTTATCCTTAAACTAAATACTATATTTAAGAAGAAATGTGTCTAAAG
1 TTTGCTAATGAGTACCTCCTTATCCTTAAACTAAATACTAGATTCAAGAAGAAATGTGTCTAAAG
* * *
9971073 GCTTAAATGATTTATCTAATAAGTTTGCCTTATCAACACATTTATCCAT-TCATCCATTTTCACA
66 GCTTAAATGATCTATCTAATAAGTTTACCTTATCAACACATTTATCCATCTAATCCATTTTCACA
* *
9971137 TAATTAAGTAATTGATCTTCAAATAACTCAAGAAATAGCTTGAATGGAATATCAAA-CTCAACTT
131 TAATTAAGTAAGTGATCTTCAAATAACTCAAGAAATAGCTTGAATGAAATAT-AAAGCTCAACTT
* * *
9971201 TTTATTTAATGCTATCAACTTTTTCAATTTCTCTAAATGATCCATTATCATCAAATT
195 TTTATTAAATGCTATCAACTTTCTCAATTTCCCTAAATGATCCATTATCATCAAATT
9971258 CCCTAGCCTT
Statistics
Matches: 223, Mismatches: 26, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
267 117 0.52
268 106 0.48
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.38
Consensus pattern (268 bp):
TTTGCTAATGAGTACCTCCTTATCCTTAAACTAAATACTAGATTCAAGAAGAAATGTGTCTAAAG
GCTTAAATGATCTATCTAATAAGTTTACCTTATCAACACATTTATCCATCTAATCCATTTTCACA
TAATTAAGTAAGTGATCTTCAAATAACTCAAGAAATAGCTTGAATGAAATATAAAGCTCAACTTT
TTATTAAATGCTATCAACTTTCTCAATTTCCCTAAATGATCCATTATCATCAAATTTCTAAACAC
ATAAGTCT
Found at i:9973754 original size:362 final size:356
Alignment explanation
Indices: 9973163--9973845 Score: 911
Period size: 362 Copynumber: 1.9 Consensus size: 356
9973153 CATACATTAA
* * * **
9973163 TTGAAATCAACAAATTGAGTGCAAAGAATTGAAACAAAGTAAGTAAACAAGCAAATCAACAAGTG
1 TTGAAATCAACAAATTGAGTGCAAAGAATTAAAACAAAGCAAGTAAACAAACAAATCAACAAGCA
* ** * *
9973228 CAAAGCAAGAAAAGAGTGGATTGATTGCCTACCAAGGAGAGACACAAATGCTGTCACCACCTGCT
66 AAAAGCAAGAAAAGAGTGGATCAATTGCCTACCAAGGAGAGACACAAATCCTGTCACCACCTACT
**
9973293 ACTACCTCTGTTGTTAGCTTCCCAATTGAAAATTCCAAGATTTTTACAGAAAAAAGTAGAAGGAA
131 ACTACCTCTGTTACTAGCTTCCCAATTGAAAATTCCAAGATTTTTACAGAAAAAAGTAGAAGGAA
* * *
9973358 TTTGATAATGAAAATTTAAAAATCTAAAGTCCTATGAATTTAGAGTATACAAAAAAATGGAAGCA
196 TTTGACAATGAAAATTTAAAAATCTAAAGTCCTATGAATTTAGAGTACA-AAAAAAATCGAAGCA
* * * *
9973423 AAACAAGAAAAAATTGAATAAG-AAAGTTATGAAAATCGAATAGCATTTAGAAACAAAATTTAAA
260 AAACAAGAAAAAATTGAAGAAGAAAAGCTATGAAAACCAAATAGCATTTAGAAACAAAATTTAAA
9973487 GTGGTTTAACATGTGAATCAGTTATAAACCAG
325 GTGGTTTAACATGTGAATCAGTTATAAACCAG
*
9973519 TTGAAATCAACAAATTGAGTGCAAAGAATTAAAACAAAGCAAGTAAACAAATAAATCAACAAGCA
1 TTGAAATCAACAAATTGAGTGCAAAGAATTAAAACAAAGCAAGTAAACAAACAAATCAACAAGCA
* * ** *
9973584 AAAATG-AAGAAAATAGTGGATCAATTGCCTAGCAAGGAGAAAAGACTCCACAGGTCCTGTCAGC
66 AAAA-GCAAGAAAAGAGTGGATCAATTGCCTACCAAGGAG---AGA---CACAAATCCTGTCACC
* * * * ** *
9973648 ACCTATTGCTACCTCTGTTACTAGCTTGCCAATTGAAAATTCCAAGATTTTTAGAGAAAAATTTT
124 ACCTACTACTACCTCTGTTACTAGCTTCCCAATTGAAAATTCCAAGATTTTTACAGAAAAAAGTA
* * ** *
9973713 GAAGGAATTTGGCAATGAAATTTTCTAGATCTAAAGTCCTATGAATTTAGAGTACAAAAAAAATC
189 GAAGGAATTTGACAATGAAAATTTAAAAATCTAAAGTCCTATGAATTTAGAGTACAAAAAAAATC
* * **
9973778 GAAGCAAAACAAGAAAGAATTGAAGGAGAAAAGCTATGAAAACCAAATAGTGTTTAGAAACAAAA
254 GAAGCAAAACAAGAAAAAATTGAAGAAGAAAAGCTATGAAAACCAAATAGCATTTAGAAACAAAA
9973843 TTT
319 TTT
9973846 GCCAAATAGC
Statistics
Matches: 278, Mismatches: 41, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
356 91 0.33
357 1 0.00
359 3 0.01
361 33 0.12
362 150 0.54
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.24
Consensus pattern (356 bp):
TTGAAATCAACAAATTGAGTGCAAAGAATTAAAACAAAGCAAGTAAACAAACAAATCAACAAGCA
AAAAGCAAGAAAAGAGTGGATCAATTGCCTACCAAGGAGAGACACAAATCCTGTCACCACCTACT
ACTACCTCTGTTACTAGCTTCCCAATTGAAAATTCCAAGATTTTTACAGAAAAAAGTAGAAGGAA
TTTGACAATGAAAATTTAAAAATCTAAAGTCCTATGAATTTAGAGTACAAAAAAAATCGAAGCAA
AACAAGAAAAAATTGAAGAAGAAAAGCTATGAAAACCAAATAGCATTTAGAAACAAAATTTAAAG
TGGTTTAACATGTGAATCAGTTATAAACCAG
Found at i:9974596 original size:25 final size:27
Alignment explanation
Indices: 9974575--9974625 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 27
9974565 TGCAAAGTAA
*
9974575 ATAAAGAAAAC-TTGTA-TGAAAGAAT
1 ATAAACAAAACTTTGTATTGAAAGAAT
*
9974600 GTAAACAAAACTTTGTATTGAAAGAA
1 ATAAACAAAACTTTGTATTGAAAGAA
9974626 AGTTTGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.41
26 5 0.23
27 8 0.36
ACGTcount: A:0.53, C:0.06, G:0.16, T:0.25
Consensus pattern (27 bp):
ATAAACAAAACTTTGTATTGAAAGAAT
Found at i:9977777 original size:14 final size:14
Alignment explanation
Indices: 9977752--9977785 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
9977742 TTTTGATTTA
9977752 ATATAAATATAT-T
1 ATATAAATATATAT
9977765 -TATAAATATATAT
1 ATATAAATATATAT
9977778 ATATAAAT
1 ATATAAAT
9977786 TTGTACATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 11 0.58
13 1 0.05
14 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATATAAATATATAT
Found at i:9989517 original size:21 final size:21
Alignment explanation
Indices: 9989477--9989517 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9989467 TACATATTGA
* * *
9989477 TGTAGTTTTTTTTTTTTTTTT
1 TGTAGTTGTTTCTTTGTTTTT
9989498 TGTAGTTGTTTCTTTGTTTT
1 TGTAGTTGTTTCTTTGTTTT
9989518 ATAGGTTGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.05, C:0.02, G:0.15, T:0.78
Consensus pattern (21 bp):
TGTAGTTGTTTCTTTGTTTTT
Found at i:9990391 original size:20 final size:21
Alignment explanation
Indices: 9990363--9990408 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
9990353 AAGAAATAAA
*
9990363 GAAAGAAAAAGTTGTGAAAAG
1 GAAAGAAAAAGTGGTGAAAAG
9990384 GAAA-AAAAAGTGGTGAAAAG
1 GAAAGAAAAAGTGGTGAAAAG
*
9990404 CAAAG
1 GAAAG
9990409 TAAGGAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.59, C:0.02, G:0.28, T:0.11
Consensus pattern (21 bp):
GAAAGAAAAAGTGGTGAAAAG
Found at i:9995233 original size:16 final size:17
Alignment explanation
Indices: 9995203--9995240 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
9995193 CACCCTCATA
9995203 GTGCCCATCAAAAAATG
1 GTGCCCATCAAAAAATG
9995220 GTGCCCAT-AAAAAATG
1 GTGCCCATCAAAAAATG
9995236 GTGCC
1 GTGCC
9995241 AGTTCCATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (17 bp):
GTGCCCATCAAAAAATG
Found at i:9995927 original size:8 final size:8
Alignment explanation
Indices: 9995911--9995956 Score: 83
Period size: 8 Copynumber: 5.6 Consensus size: 8
9995901 ATAAAATGAT
9995911 AAAATAATC
1 AAAA-AATC
9995920 AAAAAATC
1 AAAAAATC
9995928 AAAAAATC
1 AAAAAATC
9995936 AAAAAATC
1 AAAAAATC
9995944 AAAAAATC
1 AAAAAATC
9995952 AAAAA
1 AAAAA
9995957 TAAAAATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 33 0.89
9 4 0.11
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAATC
Found at i:9995981 original size:7 final size:6
Alignment explanation
Indices: 9995945--9995986 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
9995935 CAAAAAATCA
*
9995945 AAAAAT CAAAAAT AAAAAT AAAAAT TAAAAT GAAAAA- AAAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAAA
9995987 ACCTGCAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.16
6 17 0.53
7 10 0.31
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:9996586 original size:51 final size:53
Alignment explanation
Indices: 9996445--9996592 Score: 187
Period size: 52 Copynumber: 2.8 Consensus size: 53
9996435 TTGATTTCAG
**
9996445 TTTTAATGAGAATTGATTATGAAATTAAATCCCAAAAATCTCTC-CCTATCAT
1 TTTTAATGCCAATTGATTATGAAATTAAATCCCAAAAATCTCTCACCTATCAT
* ***
9996497 TTTTAATGCCAATTGATTCTGAAATTAAATCTTGAAAATCTCTCACC-ATCA-
1 TTTTAATGCCAATTGATTATGAAATTAAATCCCAAAAATCTCTCACCTATCAT
* *
9996548 TTTTAATGCCAATTGATTTTGGAAA-TAAAACCCAAAAATCTCTCA
1 TTTTAATGCCAATTGATTAT-GAAATTAAATCCCAAAAATCTCTCA
9996593 ATTATAGTTG
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
51 35 0.42
52 46 0.55
53 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (53 bp):
TTTTAATGCCAATTGATTATGAAATTAAATCCCAAAAATCTCTCACCTATCAT
Found at i:9997180 original size:86 final size:86
Alignment explanation
Indices: 9997057--9997362 Score: 364
Period size: 86 Copynumber: 3.6 Consensus size: 86
9997047 AAATTTTAAG
* * * * * *
9997057 ATTCACAAGAATGGAAGATTCGTAAGATTCTAAGTTTCGCAGAGGTTTTAGATTCACAAAGATTT
1 ATTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTCGCAAAGGTTATAGATTCACAAAGATTT
* *
9997122 CAAGTTTGCAAGAACCTTT-AG
66 TAAGTTTGCAAGAA-CTTTCAA
* ** * * * * **
9997143 ATTCGTAAGAAAAAAACATTCACAAGATTCCAAGTTTCGTAAAGGTTCTAGATTTGCAAAGATTT
1 ATTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTCGCAAAGGTTATAGATTCACAAAGATTT
*
9997208 TAAGTTTGCAAGGACTTTCAA
66 TAAGTTTGCAAGAACTTTCAA
* *
9997229 ATTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTCACAAATGTTATAGATTCACAAAGATTT
1 ATTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTCGCAAAGGTTATAGATTCACAAAGATTT
*
9997294 TAGGTTTGCAA-AGACTTTCAA
66 TAAGTTTGCAAGA-ACTTTCAA
* * *
9997315 ATTTGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTTGCAGAGGTTA
1 ATTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTCGCAAAGGTTA
9997363 AAAAAATGAT
Statistics
Matches: 183, Mismatches: 35, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
85 4 0.02
86 179 0.98
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (86 bp):
ATTCGCAAGAATGAAAGATTCGCAAGATTCCAAGTTTCGCAAAGGTTATAGATTCACAAAGATTT
TAAGTTTGCAAGAACTTTCAA
Found at i:10002377 original size:8 final size:7
Alignment explanation
Indices: 10002360--10002413 Score: 51
Period size: 8 Copynumber: 7.7 Consensus size: 7
10002350 ATAAAAAGCT
10002360 TAAAATA
1 TAAAATA
10002367 TAAAATGA
1 TAAAAT-A
10002375 TAAAATAA
1 TAAAAT-A
*
10002383 TAAAAAA
1 TAAAATA
10002390 TCAAAA-A
1 T-AAAATA
10002397 TAAAA-A
1 TAAAATA
10002403 TAAAA-A
1 TAAAATA
10002409 TAAAA
1 TAAAA
10002414 ATGAAAAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
6 16 0.37
7 10 0.23
8 17 0.40
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAAATA
Found at i:10002401 original size:6 final size:6
Alignment explanation
Indices: 10002324--10002421 Score: 69
Period size: 6 Copynumber: 15.7 Consensus size: 6
10002314 AAAAATCAAC
* *
10002324 AAAAT- AAAATA AACAATA AAAAT- GAAATA AAAAGCTT AAAATA TAAAATGA
1 AAAATA AAAATA AA-AATA AAAATA AAAATA AAAA--TA AAAATA -AAAAT-A
*
10002375 TAAAAT- AATA-A AAAATCA AAAATA AAAATA AAAATA AAAATGA AAAA
1 -AAAATA AAAATA AAAAT-A AAAATA AAAATA AAAATA AAAAT-A AAAA
10002422 AGGAAAACCT
Statistics
Matches: 76, Mismatches: 6, Indels: 20
0.75 0.06 0.20
Matches are distributed among these distances:
5 15 0.20
6 27 0.36
7 22 0.29
8 12 0.16
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:10002421 original size:32 final size:32
Alignment explanation
Indices: 10002329--10002421 Score: 77
Period size: 32 Copynumber: 2.9 Consensus size: 32
10002319 TCAACAAAAT
* *
10002329 AAAATAAACAATAAAAAT-GAAATAAAAAGCTT
1 AAAATAAA-AATAAAAATAAAAATAAAAAGCTA
* *
10002361 AAAATATAAAATGATAAAAT-AATA-AAAAATC-A
1 AAAATA-AAAAT-A-AAAATAAAAATAAAAAGCTA
10002393 AAAATAAAAATAAAAATAAAAATGAAAAA
1 AAAATAAAAATAAAAATAAAAAT-AAAAA
10002422 AGGAAAACCT
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
29 5 0.10
30 4 0.08
31 5 0.10
32 20 0.40
33 9 0.18
34 7 0.14
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.18
Consensus pattern (32 bp):
AAAATAAAAATAAAAATAAAAATAAAAAGCTA
Found at i:10003641 original size:22 final size:22
Alignment explanation
Indices: 10003616--10003657 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
10003606 AGCAAGCATA
10003616 ACCAA-AATAACTTACTTTAACT
1 ACCAATAATAAC-TACTTTAACT
10003638 ACCAATAATAACTACTTTAA
1 ACCAATAATAACTACTTTAA
10003658 GTTTCTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (22 bp):
ACCAATAATAACTACTTTAACT
Found at i:10008197 original size:29 final size:30
Alignment explanation
Indices: 10008160--10008230 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
10008150 ATTTACTTAG
* *
10008160 ATAATTTTTTATACTTTTA-TTATATCA-AA
1 ATAAATTTTTATACTTTAATTTATA-CATAA
* *
10008189 ATAAATTTTTATTCTTTAATTTGTACATAA
1 ATAAATTTTTATACTTTAATTTATACATAA
10008219 ATAAATTTTTAT
1 ATAAATTTTTAT
10008231 TTCAAACGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 18 0.50
30 18 0.50
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (30 bp):
ATAAATTTTTATACTTTAATTTATACATAA
Found at i:10008333 original size:23 final size:23
Alignment explanation
Indices: 10008284--10008338 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
10008274 AAATTAAAAG
*
10008284 TTAAAAGTTTATTTGGATACAAA
1 TTAAAAATTTATTTGGATACAAA
* *
10008307 TTAAAAATTTATTT-GAGTGCAAC
1 TTAAAAATTTATTTGGA-TACAAA
10008330 TTAAAAATT
1 TTAAAAATT
10008339 AAAAGCTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 2 0.07
23 26 0.93
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.40
Consensus pattern (23 bp):
TTAAAAATTTATTTGGATACAAA
Found at i:10009716 original size:38 final size:38
Alignment explanation
Indices: 10009665--10009742 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 38
10009655 TGTTTGGGAA
* *
10009665 AAAAAAAAAAAGAATCAAAG-TCTTACTATATATGTGTG
1 AAAAAAAAAAAGAACCAAAGAT-TTACTATATATGTATG
* *
10009703 AAAAAAAAAAAGAACCAACGATTTATTATATATGTATG
1 AAAAAAAAAAAGAACCAAAGATTTACTATATATGTATG
10009741 AA
1 AA
10009743 TTTTGAGTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 34 0.97
39 1 0.03
ACGTcount: A:0.55, C:0.08, G:0.12, T:0.26
Consensus pattern (38 bp):
AAAAAAAAAAAGAACCAAAGATTTACTATATATGTATG
Found at i:10010373 original size:16 final size:16
Alignment explanation
Indices: 10010332--10010373 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
10010322 ATAAATGAAC
10010332 ATGTCACAAAATTATA
1 ATGTCACAAAATTATA
* *
10010348 ATACTCACAAAGTTATA
1 AT-GTCACAAAATTATA
10010365 ATGTCACAA
1 ATGTCACAA
10010374 CACCACTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.29
Consensus pattern (16 bp):
ATGTCACAAAATTATA
Found at i:10012811 original size:140 final size:144
Alignment explanation
Indices: 10012577--10012856 Score: 442
Period size: 140 Copynumber: 2.0 Consensus size: 144
10012567 AACGTAAACA
* *
10012577 CATAAGAAGAAAAATTAAAAATATATCATTTGACTTAAAATGGATAAAAACTATTATACGTAGTC
1 CATAAGAAGAAAAATTAAAAATATATCATTTGACTTAAAATGGATAAAAACTAGTATA-GTAATC
* * **
10012642 AATCAAAATAAATTATAAAAATTATAAACATAACGAAGGATAAAAAAAAGTTTAATTTTTTTATT
65 AACCAAAATAAATTATAAAAATTATAAACATAACGAAGGATAAAAAAAAGTGTAATTTTCATATT
10012707 ATTTTAATGTTAATG
130 ATTTTAATGTTAATG
*
10012722 CATAAGAAGCAAAA-TAAAAATATATCATTTGACTTAAAATGGATAAAAAC-AGT-T-GTAATCA
1 CATAAGAAGAAAAATTAAAAATATATCATTTGACTTAAAATGGATAAAAACTAGTATAGTAATCA
* *
10012783 ACCAAAATAAATTATAAAAGTTATAAACATAACGAAGGATAAAAATAAGTGTAATTTTCATATTA
66 ACCAAAATAAATTATAAAAATTATAAACATAACGAAGGATAAAAAAAAGTGTAATTTTCATATTA
10012848 TTTTAATGT
131 TTTTAATGT
10012857 AAAAAAGTAA
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
140 74 0.59
142 1 0.01
143 2 0.02
144 36 0.29
145 13 0.10
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (144 bp):
CATAAGAAGAAAAATTAAAAATATATCATTTGACTTAAAATGGATAAAAACTAGTATAGTAATCA
ACCAAAATAAATTATAAAAATTATAAACATAACGAAGGATAAAAAAAAGTGTAATTTTCATATTA
TTTTAATGTTAATG
Found at i:10013122 original size:10 final size:11
Alignment explanation
Indices: 10013106--10013143 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
10013096 GTTATAAAAT
10013106 TATAAATGTAA
1 TATAAATGTAA
10013117 TA-AAATGTAAA
1 TATAAATGT-AA
*
10013128 AATAAATGTAA
1 TATAAATGTAA
10013139 TATAA
1 TATAA
10013144 TATTATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 6 0.26
11 11 0.48
12 6 0.26
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.32
Consensus pattern (11 bp):
TATAAATGTAA
Found at i:10014025 original size:19 final size:19
Alignment explanation
Indices: 10014001--10014038 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10013991 CTTAGAGCCT
10014001 TACCGGTAATGAATAAACA
1 TACCGGTAATGAATAAACA
10014020 TACCGGTAATGAATAAACA
1 TACCGGTAATGAATAAACA
10014039 AACTTTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (19 bp):
TACCGGTAATGAATAAACA
Found at i:10014964 original size:16 final size:16
Alignment explanation
Indices: 10014936--10014976 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
10014926 TATAAATATA
10014936 AAATTCTAA-CTTACTT
1 AAATT-TAATCTTACTT
10014952 AAATTTAATCTTACTT
1 AAATTTAATCTTACTT
10014968 AAATTTAAT
1 AAATTTAAT
10014977 TTAAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 3 0.12
16 21 0.88
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.46
Consensus pattern (16 bp):
AAATTTAATCTTACTT
Found at i:10015142 original size:22 final size:19
Alignment explanation
Indices: 10015100--10015151 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 19
10015090 ATAATATTAT
*
10015100 TATTTATATAGAAATAGAA
1 TATTTATATAGAAATAAAA
10015119 TAATTTATATAGAATATATAAA
1 T-ATTTATATAGAA-ATA-AAA
10015141 TATTCTATATA
1 TATT-TATATA
10015152 TTTCAATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 12 0.43
21 6 0.21
22 9 0.32
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (19 bp):
TATTTATATAGAAATAAAA
Found at i:10015174 original size:10 final size:10
Alignment explanation
Indices: 10015161--10015200 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
10015151 ATTTCAATAT
10015161 ATATATTGAA
1 ATATATTGAA
10015171 ATATATTG-A
1 ATATATTGAA
*
10015180 A-ATATCGAA
1 ATATATTGAA
10015189 ATATATTGAA
1 ATATATTGAA
10015199 AT
1 AT
10015201 CGATTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
8 5 0.19
9 4 0.15
10 17 0.65
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.38
Consensus pattern (10 bp):
ATATATTGAA
Found at i:10015189 original size:18 final size:18
Alignment explanation
Indices: 10015163--10015200 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
10015153 TTCAATATAT
*
10015163 ATATTGAAATATATTGAA
1 ATATCGAAATATATTGAA
10015181 ATATCGAAATATATTGAA
1 ATATCGAAATATATTGAA
10015199 AT
1 AT
10015201 CGATTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.37
Consensus pattern (18 bp):
ATATCGAAATATATTGAA
Found at i:10019056 original size:57 final size:57
Alignment explanation
Indices: 10018984--10019371 Score: 480
Period size: 57 Copynumber: 6.7 Consensus size: 57
10018974 TTTTGTACAG
* * * * *
10018984 GGAAAATTGAAACTTTCAACTTTTCCCCAAAATATTTTTTAGAAA-CTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTAAAAAGC-TTATTTTCAA
* *
10019041 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-AGATTTTTAAAAA-CTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATA-TTTTTTAAAAAGCTTATTTTCAA
* * *
10019098 GGAAAATTGATACTTTTAACTTTTCTTCAAAAATATTTTTTTAGAAAGCTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATA-TTTTTTAAAAAGCTTATTTTCAA
*
10019157 AGAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTAAAAAGCTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTAAAAAGCTTATTTTCAA
** * *
10019214 AAAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTAGAAAGCTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATATTTTTTAAAAAGCTTATTTTCAA
* * *
10019272 GAAAAATTGATACTTTCAACGTTTCCTCAAAAATATTTTTTTGAAAAA-CTTATTTTAAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATA-TTTTTT-AAAAAGCTTATTTTCAA
10019331 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTT
10019372 TTTTGAATTT
Statistics
Matches: 293, Mismatches: 27, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
56 1 0.00
57 107 0.37
58 98 0.33
59 83 0.28
60 4 0.01
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTAAAAAGCTTATTTTCAA
Found at i:10019179 original size:116 final size:113
Alignment explanation
Indices: 10018984--10019371 Score: 539
Period size: 116 Copynumber: 3.4 Consensus size: 113
10018974 TTTTGTACAG
* * * * *
10018984 GGAAAATTGAAACTTTCAACTTTTC-CCCAAAATATTTTTTAGAAA-CTTTAATTTCGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTAGAAAGC-TTATTTTC-AAGAAAA
* * *
10019047 TTGATACTTTCAACTTTTCCCCAAAAAAGATTTTTAAAAACTTATTTTTAA
64 TTGATACTTTCAACTTTTCCTCAAAAAA-TTTTTTAAAAACTTATTTTAAA
*
10019098 GGAAAATTGATACTTTTAACTTTTCTTCAAAAATATTTTTTTAGAAAGCTTATTTTCAAAGAAAA
1 GGAAAATTGATACTTTCAACTTTTCTTCAAAAATA-TTTTTTAGAAAGCTTATTTTC-AAGAAAA
*
10019163 TTGATACTTTCAACTTTTCCTCAAAATATTTTTTAAAAAGCTTATTTTCAAA
64 TTGATACTTTCAACTTTTCCTCAAAAAATTTTTTAAAAA-CTTATTTT-AAA
*
10019215 -AAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGAAAAAT
1 GGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTAGAAAGCTTATTTTCAAG-AAAAT
*
10019279 TGATACTTTCAACGTTTCCTCAAAAATATTTTTTTGAAAAACTTATTTTAAA
65 TGATACTTTCAACTTTTCCTCAAAAA-A-TTTTTT-AAAAACTTATTTTAAA
*
10019331 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTT
10019372 TTTTGAATTT
Statistics
Matches: 247, Mismatches: 17, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
114 26 0.11
115 67 0.27
116 94 0.38
117 55 0.22
118 5 0.02
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (113 bp):
GGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGAAAATT
GATACTTTCAACTTTTCCTCAAAAAATTTTTTAAAAACTTATTTTAAA
Found at i:10019438 original size:6 final size:5
Alignment explanation
Indices: 10019391--10019437 Score: 67
Period size: 5 Copynumber: 8.8 Consensus size: 5
10019381 TTATTTAAAG
10019391 AAAAT AAAAT AAAAT AAAAAT AAAAAT AAAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT AAAAT AAAAT AAAA
10019438 AGTATTGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 24 0.59
6 17 0.41
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:10019485 original size:23 final size:23
Alignment explanation
Indices: 10019392--10019490 Score: 66
Period size: 23 Copynumber: 4.4 Consensus size: 23
10019382 TATTTAAAGA
*
10019392 AAATAAAATAA-AATAAAAATAA-
1 AAAT-AAATAATAATAATAATAAT
10019414 AAATAAA-AATAA-AATAA-AAT
1 AAATAAATAATAATAATAATAAT
* * * **
10019434 AAA-AAGTATTGAACAATTCTAAT
1 AAATAAATAAT-AATAATAATAAT
*
10019457 CTAATAAATAATAATAATAATAAT
1 -AAATAAATAATAATAATAATAAT
10019481 AAATAAATAA
1 AAATAAATAA
10019491 ATAAACCTGA
Statistics
Matches: 57, Mismatches: 12, Indels: 15
0.68 0.14 0.18
Matches are distributed among these distances:
19 4 0.07
20 11 0.19
21 7 0.12
22 7 0.12
23 12 0.21
24 11 0.19
25 5 0.09
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (23 bp):
AAATAAATAATAATAATAATAAT
Found at i:10021744 original size:41 final size:41
Alignment explanation
Indices: 10021552--10022020 Score: 397
Period size: 45 Copynumber: 11.0 Consensus size: 41
10021542 ACGATAAAGA
* *
10021552 CTCAACAACTTTGAAAAAATAAACAATGACTCCTCTAAGCAGAGG
1 CTCAACGACTTTG-AAAAATAAA-TA-G-CTCCTCTAAGCAGAGG
* *
10021597 CTCAATGACTTTGAAAAAATAAATAAAAGCTCCTCTAATCAGAGG
1 CTCAACGACTTTG-AAAAATAAAT---AGCTCCTCTAAGCAGAGG
* *
10021642 CTC-ACAACTTTGGAAAAATAAATAAAGGTTCCTCTAAGCAGAGG
1 CTCAACGACTTT-GAAAAATAAAT--A-GCTCCTCTAAGCAGAGG
* *
10021686 CTCAACAACTTTGGAAAAATAAATAGCTCCTCTAATCAGAGG
1 CTCAACGACTTT-GAAAAATAAATAGCTCCTCTAAGCAGAGG
* * *
10021728 CTCAATGATTTTGAAAAATAAATAAAGCTCCTCTAAACAGAGG
1 CTCAACGACTTTGAAAAATAAAT--AGCTCCTCTAAGCAGAGG
* *
10021771 TTCAATGACTTTGAAAAAATAAATAAAAGCTCCTCTAAGCAGAGG
1 CTCAACGACTTTG-AAAAATAAAT---AGCTCCTCTAAGCAGAGG
* *
10021816 CTCAACGACTTTGGAAAAATAAATGGCTCCTCTAATCAGAGG
1 CTCAACGACTTT-GAAAAATAAATAGCTCCTCTAAGCAGAGG
* * * *
10021858 CTTAACAACTTTGAAAAATAAATGGCTCCTCTAATCAGAGG
1 CTCAACGACTTTGAAAAATAAATAGCTCCTCTAAGCAGAGG
* ** * *
10021899 CTCAACGACTTTGGAAAATAAATAAATTCTCTAAGCAGAAG
1 CTCAACGACTTTGAAAAATAAATAGCTCCTCTAAGCAGAGG
* * * * * *
10021940 CACCATGAC-TTCAAAAATAAAT-GCTTCTCTAAACAGAGG
1 CTCAACGACTTTGAAAAATAAATAGCTCCTCTAAGCAGAGG
* * * * * *
10021979 CACCACAACTTTGAAAAGTAAATTA-CTCATCTAAACAGAGG
1 CTCAACGACTTTGAAAAATAAA-TAGCTCCTCTAAGCAGAGG
10022020 C
1 C
10022021 AACAAAACTT
Statistics
Matches: 363, Mismatches: 47, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
39 20 0.06
40 21 0.06
41 94 0.26
42 50 0.14
43 32 0.09
44 44 0.12
45 99 0.27
46 2 0.01
47 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.24
Consensus pattern (41 bp):
CTCAACGACTTTGAAAAATAAATAGCTCCTCTAAGCAGAGG
Found at i:10021805 original size:130 final size:128
Alignment explanation
Indices: 10021552--10021924 Score: 500
Period size: 130 Copynumber: 2.9 Consensus size: 128
10021542 ACGATAAAGA
* * *
10021552 CTCAACAACTTTGAAAAAATAAACAATGACTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAAAT
1 CTCAACAACTTTGGAAAAATAAA-TA-G-CTCCTCTAATCAGAGGCTCAATGACTTTG-AAAAAT
* *
10021617 AAATAAAAGCTCCTCTAATCAGAGGCTCACA-ACTTTGGAAAAATAAATAAAGGTTCCTCTAAGC
62 AAAT-AAAGCTCCTCTAATCAGAGGCTCA-AGACTTT-GAAAAATAAATAAAAGCTCCTCTAAGC
10021681 AGAGG
124 AGAGG
*
10021686 CTCAACAACTTTGGAAAAATAAATAGCTCCTCTAATCAGAGGCTCAATGATTTTGAAAAATAAAT
1 CTCAACAACTTTGGAAAAATAAATAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAATAAAT
* *
10021751 AAAGCTCCTCTAAACAGAGGTTCAATGACTTTGAAAAAATAAATAAAAGCTCCTCTAAGCAGAGG
66 AAAGCTCCTCTAATCAGAGGCTCAA-GACTTTG-AAAAATAAATAAAAGCTCCTCTAAGCAGAGG
* * * **
10021816 CTCAACGACTTTGGAAAAATAAATGGCTCCTCTAATCAGAGGCTTAACAACTTTGAAAAATAAAT
1 CTCAACAACTTTGGAAAAATAAATAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAATAAAT
* *
10021881 --GGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAATAAATAAA
66 AAAGCTCCTCTAATCAGAGGCTCAA-GACTTTGAAAAATAAATAAA
10021925 TTCTCTAAGC
Statistics
Matches: 217, Mismatches: 19, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
127 12 0.06
128 28 0.13
129 23 0.11
130 103 0.47
131 27 0.12
132 1 0.00
133 1 0.00
134 22 0.10
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (128 bp):
CTCAACAACTTTGGAAAAATAAATAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAATAAAT
AAAGCTCCTCTAATCAGAGGCTCAAGACTTTGAAAAATAAATAAAAGCTCCTCTAAGCAGAGG
Found at i:10021982 original size:39 final size:41
Alignment explanation
Indices: 10021617--10022021 Score: 174
Period size: 41 Copynumber: 9.7 Consensus size: 41
10021607 TTGAAAAAAT
* * * * *
10021617 AAATAAA-AGCTCCTCTAATCAGAGGC-TCACAACTTTGGAA
1 AAATAAATAGCTTCTCTAAACAGAGGCACCACGACTTT-CAA
* * * * * *
10021657 AAATAAATAAAGGTTCCTCTAAGCAGAGGCTCAACAACTTTGGAA
1 AAATAAAT--AGCTT-CTCTAAACAGAGGCACCACGACTTT-CAA
* * * * * * *
10021702 AAATAAATAGCTCCTCTAATCAGAGGCTCAATGATTTTGAA
1 AAATAAATAGCTTCTCTAAACAGAGGCACCACGACTTTCAA
* ** * * *
10021743 AAATAAATAAAGCTCCTCTAAACAGAGGTTCAATGACTTTGAAA
1 AAATAAAT--AGCTTCTCTAAACAGAGGCACCACGACTTT-CAA
* * * * *
10021787 AAATAAATAAAAGCTCCTCTAAGCAGAGGCTCAACGACTTTGGAA
1 AAATAAAT---AGCTTCTCTAAACAGAGGCACCACGACTTT-CAA
* * * *** * *
10021832 AAATAAATGGCTCCTCTAATCAGAGGCTTAACAACTTTGAA
1 AAATAAATAGCTTCTCTAAACAGAGGCACCACGACTTTCAA
* * * * * **
10021873 AAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGGA
1 AAATAAATAGCTTCTCTAAACAGAGGCACCACGACTTTCAA
** * * *
10021914 AAATAAATAAATTCTCTAAGCAGAAGCACCATGAC-TTCAA
1 AAATAAATAGCTTCTCTAAACAGAGGCACCACGACTTTCAA
* *
10021954 AAATAAAT-GCTTCTCTAAACAGAGGCACCACAACTTTGAA
1 AAATAAATAGCTTCTCTAAACAGAGGCACCACGACTTTCAA
*
10021994 AAGTAAATTA-C-TCATCTAAACAGAGGCA
1 AAATAAA-TAGCTTC-TCTAAACAGAGGCA
10022022 ACAAAACTTT
Statistics
Matches: 307, Mismatches: 45, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
39 20 0.07
40 30 0.10
41 94 0.31
42 47 0.15
43 33 0.11
44 23 0.07
45 60 0.20
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.24
Consensus pattern (41 bp):
AAATAAATAGCTTCTCTAAACAGAGGCACCACGACTTTCAA
Found at i:10022036 original size:80 final size:78
Alignment explanation
Indices: 10021617--10022040 Score: 275
Period size: 80 Copynumber: 5.1 Consensus size: 78
10021607 TTGAAAAAAT
* * * * *
10021617 AAATAAAAGCTCCTCTAATCAGAGGCTC-ACAACTTTGGAAAAATAAATAAAGGTTCCTCTAAGC
1 AAATAAATGCTCCTCTAAACAGAGGCTCAACGACTTTGG-AAAATAAAT-AA--CT-CTCTAAAC
10021681 AGAGGCTCAAC-AACTTTGGAA
61 AGAGG--CAACAAACTTT--AA
* * * *
10021702 AAATAAATAGCTCCTCTAATCAGAGGCTCAATGATTTTGAAAAATAAATAAAGCTCCTCTAAACA
1 AAATAAAT-GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAAT-AA-CT-CTCTAAACA
**
10021767 GAGGTTCAA-TGACTTTGAAA
62 GAGG--CAACAAACTTT--AA
* ** *
10021787 AAATAAATAAAAGCTCCTCTAAGCAGAGGCTCAACGACTTTGGAAAAATAAATGGCTCCTCTAAT
1 AAATAAAT----GCTCCTCTAAACAGAGGCTCAACGACTTTGG-AAAATAAATAACT-CTCTAAA
10021852 CAGAGGCTTAAC-AACTTTGAA
60 CAGAGGC--AACAAACTTT-AA
* * *
10021873 AAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGGAAAATAAATAAATTCTCTAAGCAGA
1 AAATAAAT-GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAAT-AACTCTCTAAACAGA
* * * *
10021938 AGCACCATGACTTCAA
64 GGCAACA-AACTTTAA
* * * * *
10021954 AAATAAATGCTTCTCTAAACAGAGGCACCACAACTTT-GAAAAGTAAATTACTCATCTAAACAGA
1 AAATAAATGCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAA-TAAATAACTC-TCTAAACAGA
10022018 GGCAACAAAACTTTAA
64 GGCAAC-AAACTTTAA
10022034 AAA-AAAT
1 AAATAAAT
10022041 AAATTGCTCC
Statistics
Matches: 282, Mismatches: 41, Indels: 38
0.78 0.11 0.11
Matches are distributed among these distances:
79 12 0.04
80 53 0.19
81 11 0.04
82 25 0.09
83 31 0.11
85 43 0.15
86 42 0.15
87 28 0.10
88 28 0.10
89 9 0.03
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (78 bp):
AAATAAATGCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAATAACTCTCTAAACAGAGG
CAACAAACTTTAA
Found at i:10022420 original size:43 final size:42
Alignment explanation
Indices: 10022350--10022431 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
10022340 TTTGGCAAAC
* *
10022350 TTGGAATTCATATCCAAAAATCTAAAGCTTTTCAATTGAATT
1 TTGGAATTCACATCCAAAAATCTAAAGCTTCTCAATTGAATT
* *
10022392 TTGGAGATTCACATCCAAATAT-TCAAAGCTTCTCATTTGA
1 TTGGA-ATTCACATCCAAAAATCT-AAAGCTTCTCAATTGA
10022432 GTTCAAAGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 6 0.18
43 28 0.82
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (42 bp):
TTGGAATTCACATCCAAAAATCTAAAGCTTCTCAATTGAATT
Found at i:10023181 original size:63 final size:63
Alignment explanation
Indices: 10023074--10023197 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 63
10023064 GCTTATCAGC
* ** * * *
10023074 ACTAACCATTTTAAAATAAATTTCATGTTTTGTCACTTGGTCATCATTCATAAGCTTCTCAAT
1 ACTAACCATTTCAAAATAAATTTCATCATCTATCACTTGATCATCATTCATAAGCTTCTCAAT
* * *
10023137 ACTAGCCATTTCAAAATAAATTTTATCATCTATCACTTGATCATCGTTCATAAGCTTCTCA
1 ACTAACCATTTCAAAATAAATTTCATCATCTATCACTTGATCATCATTCATAAGCTTCTCA
10023198 GCACCAGTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (63 bp):
ACTAACCATTTCAAAATAAATTTCATCATCTATCACTTGATCATCATTCATAAGCTTCTCAAT
Found at i:10023909 original size:7 final size:8
Alignment explanation
Indices: 10023890--10023926 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
10023880 TTTGAATCCT
10023890 TTTTTTCA
1 TTTTTTCA
10023898 TTTTTTCA
1 TTTTTTCA
10023906 -TTTTTCA
1 TTTTTTCA
10023913 TTTTTTCA
1 TTTTTTCA
10023921 TTTTTT
1 TTTTTT
10023927 TCCTCTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.25
8 21 0.75
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTTCA
Found at i:10023911 original size:15 final size:15
Alignment explanation
Indices: 10023891--10023925 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10023881 TTGAATCCTT
10023891 TTTTTCATTTTTTCA
1 TTTTTCATTTTTTCA
10023906 TTTTTCATTTTTTCA
1 TTTTTCATTTTTTCA
10023921 TTTTT
1 TTTTT
10023926 TTCCTCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTCATTTTTTCA
Found at i:10028145 original size:116 final size:117
Alignment explanation
Indices: 10027953--10028226 Score: 405
Period size: 116 Copynumber: 2.3 Consensus size: 117
10027943 TTTGTACAGA
*
10027953 AAAAATTGATACTTTCAACTTTTTCGC-AAAATATTTTTTAGAAACTTTAATTTTAAGGAAAATT
1 AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAACTTTAATTTTAAGGAAAATT
* *
10028017 GATATTTTTAACTTTTCCTCAAAAATCCATTTTT-AAAAACTTATTTCT-AAG
66 GATACTTTTAACTTTTCCTCAAAAATACATTTTTGAAAAACTTATTT-TAAAG
*
10028068 GAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGC-TT-ATTTTCAAGGAAAA
1 AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAA-CTTTAATTTT-AAGGAAAA
* **
10028131 TTGATACTTTTAACTTTTTCTCAAAAATATTTTTTTGAAAAACTTATTTTAAAG
64 TTGATACTTTTAACTTTTCCTCAAAAATACATTTTTGAAAAACTTATTTTAAAG
10028185 AAAAATTGATACTTTCAACTTTTTCTCAAAATATATATTTTT
1 AAAAATTGATACTTTCAACTTTTTCTCAAAA-ATAT-TTTTT
10028227 TAATTTTATT
Statistics
Matches: 144, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
115 30 0.21
116 59 0.41
117 46 0.32
118 4 0.03
119 5 0.03
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (117 bp):
AAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAACTTTAATTTTAAGGAAAATT
GATACTTTTAACTTTTCCTCAAAAATACATTTTTGAAAAACTTATTTTAAAG
Found at i:10028194 original size:59 final size:57
Alignment explanation
Indices: 10027954--10028229 Score: 351
Period size: 58 Copynumber: 4.7 Consensus size: 57
10027944 TTGTACAGAA
* *
10027954 AAAATTGATACTTTCAACTTTTTCGC-AAAATA-TTTTTTAGAAACTTTAATTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAAAAAC-TT-ATTTTAAGG
* * * ***
10028011 AAAATTGATATTTTTAACTTTTCCTCAAAAATCCATTTTTAAAAACTTATTTCTAAGG
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAAAAACTTATTT-TAAGG
*
10028069 AAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTAGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTA-AAAACTTATTTT-AAGG
* *
10028127 AAAATTGATACTTTTAACTTTTTCTCAAAAATATTTTTTTGAAAAACTTATTTTAAAGA
1 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTT-AAAAACTTATTTT-AAGG
10028186 AAAATTGATACTTTCAACTTTTTCTCAAAATATATATTTTTTAA
1 AAAATTGATACTTTCAACTTTTTCTCAAAA-ATAT-TTTTTTAA
10028230 TTTTATTTAA
Statistics
Matches: 192, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
57 33 0.17
58 87 0.45
59 59 0.31
60 7 0.04
61 6 0.03
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAAAAACTTATTTTAAGG
Found at i:10028250 original size:5 final size:5
Alignment explanation
Indices: 10028242--10028291 Score: 57
Period size: 5 Copynumber: 9.4 Consensus size: 5
10028232 TTATTTAAAG
10028242 AAAAT AAAAT AAAAAT AAAAT AAAAAT AAAAAT AAAGA- AAAAT AAAAT
1 AAAAT AAAAT -AAAAT AAAAT -AAAAT -AAAAT AAA-AT AAAAT AAAAT
10028290 AA
1 AA
10028292 CAAATATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.02
5 23 0.56
6 17 0.41
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:10028258 original size:6 final size:6
Alignment explanation
Indices: 10028242--10028297 Score: 59
Period size: 6 Copynumber: 10.0 Consensus size: 6
10028232 TTATTTAAAG
*
10028242 AAAAT- AAAATA AAAAT- AAAATA AAAATA AAAAT- -AAAGA AAAAT-
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
10028285 AAAATA ACAAATA
1 AAAATA A-AAATA
10028298 TTAAACAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
4 3 0.07
5 15 0.35
6 20 0.47
7 5 0.12
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:10028258 original size:11 final size:11
Alignment explanation
Indices: 10028242--10028288 Score: 69
Period size: 11 Copynumber: 4.3 Consensus size: 11
10028232 TTATTTAAAG
10028242 AAAATAAAATA
1 AAAATAAAATA
10028253 AAAATAAAATA
1 AAAATAAAATA
10028264 AAAATAAAAATA
1 AAAAT-AAAATA
*
10028276 AAGA-AAAATA
1 AAAATAAAATA
10028286 AAA
1 AAA
10028289 TAACAAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 8 0.24
11 16 0.48
12 9 0.27
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:10028263 original size:16 final size:16
Alignment explanation
Indices: 10028242--10028288 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
10028232 TTATTTAAAG
10028242 AAAATAAAATAAAAAT
1 AAAATAAAATAAAAAT
10028258 AAAATAAAAATAAAAAT
1 AAAAT-AAAATAAAAAT
10028275 AAAGA-AAAATAAAA
1 AAA-ATAAAATAAAA
10028289 TAACAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 14 0.48
17 14 0.48
18 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (16 bp):
AAAATAAAATAAAAAT
Found at i:10028331 original size:3 final size:3
Alignment explanation
Indices: 10028323--10028369 Score: 58
Period size: 3 Copynumber: 14.7 Consensus size: 3
10028313 CTAATCAATA
*
10028323 AAT AAT AAT AAC AAT AAT AAT AAT AAT AAAT AAAT AAAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT AAT AAT AA
10028370 ATTAAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 30 0.73
4 11 0.27
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:10028346 original size:18 final size:19
Alignment explanation
Indices: 10028319--10028375 Score: 75
Period size: 18 Copynumber: 3.1 Consensus size: 19
10028309 TAATCTAATC
10028319 AATAAATAATAATAACAAT-
1 AATAAATAATAATAA-AATA
10028338 AAT-AATAATAAT-AAATA
1 AATAAATAATAATAAAATA
*
10028355 AATAAATAATAATAAATTA
1 AATAAATAATAATAAAATA
10028374 AA
1 AA
10028376 AAAAACTGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
16 3 0.09
17 4 0.12
18 18 0.53
19 9 0.26
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AATAAATAATAATAAAATA
Found at i:10028375 original size:15 final size:15
Alignment explanation
Indices: 10028314--10028371 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 15
10028304 AATTCTAATC
*
10028314 TAATCAATAAAT-AA
1 TAATAAATAAATAAA
10028328 TAATAACA-ATAATAATAA
1 TAATAA-ATA-AAT-A-AA
10028346 TAATAAATAAATAAA
1 TAATAAATAAATAAA
10028361 TAAT-AATAAAT
1 TAATAAATAAAT
10028372 TAAAAAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
14 13 0.35
15 10 0.27
16 1 0.03
17 4 0.11
18 9 0.24
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
TAATAAATAAATAAA
Found at i:10030179 original size:23 final size:22
Alignment explanation
Indices: 10030153--10030212 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
10030143 GATAGATCAT
10030153 AAAAAAATAAAAATGAT-AAATA
1 AAAAAAATAAAAAT-ATAAAATA
* * *
10030175 CAAAAATAGAAAAATCTAAAATA
1 -AAAAAAATAAAAATATAAAATA
10030198 AAAATAAATAAAAAT
1 AAAA-AAATAAAAAT
10030213 TCTTACAATC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.18
Consensus pattern (22 bp):
AAAAAAATAAAAATATAAAATA
Found at i:10031382 original size:13 final size:13
Alignment explanation
Indices: 10031323--10031375 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
10031313 ATATCATGTA
10031323 ATCATACAA-AAT
1 ATCATACAATAAT
10031335 AT-AT--AATAA-
1 ATCATACAATAAT
*
10031344 ATCATACCAAAAAT
1 ATCATA-CAATAAT
10031358 ATCATACAATAAT
1 ATCATACAATAAT
10031371 ATCAT
1 ATCAT
10031376 GTAATAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
9 4 0.12
10 4 0.12
11 2 0.06
12 2 0.06
13 15 0.45
14 6 0.18
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (13 bp):
ATCATACAATAAT
Found at i:10031393 original size:19 final size:18
Alignment explanation
Indices: 10031366--10031405 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
10031356 ATATCATACA
* *
10031366 ATAATATCATGTAATAAAT
1 ATAAAATCATGCAAT-AAT
10031385 ATAAAATCATGCAATAAT
1 ATAAAATCATGCAATAAT
10031403 ATA
1 ATA
10031406 TTATAATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (18 bp):
ATAAAATCATGCAATAAT
Found at i:10031615 original size:18 final size:18
Alignment explanation
Indices: 10031588--10031623 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10031578 GCAATGAATT
*
10031588 AATAATCATGCAAATATA
1 AATAACCATGCAAATATA
*
10031606 AATAACCATGTAAATATA
1 AATAACCATGCAAATATA
10031624 TTAAAAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.28
Consensus pattern (18 bp):
AATAACCATGCAAATATA
Found at i:10033220 original size:12 final size:12
Alignment explanation
Indices: 10033198--10033240 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
10033188 ACCTTCGACC
10033198 AAACT-AATATA
1 AAACTAAATATA
10033209 AAACTAAATATA
1 AAACTAAATATA
*
10033221 AAATTAACAT-TA
1 AAACTAA-ATATA
10033233 AAACTAAA
1 AAACTAAA
10033241 ATCAGAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 6 0.21
12 20 0.71
13 2 0.07
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (12 bp):
AAACTAAATATA
Found at i:10033289 original size:17 final size:17
Alignment explanation
Indices: 10033267--10033300 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10033257 AGGAAAAAGT
* *
10033267 TAAAATCAAAATTAAAC
1 TAAAATAAAAACTAAAC
10033284 TAAAATAAAAACTAAAC
1 TAAAATAAAAACTAAAC
10033301 ACTTTCTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.21
Consensus pattern (17 bp):
TAAAATAAAAACTAAAC
Found at i:10033691 original size:12 final size:11
Alignment explanation
Indices: 10033674--10033722 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
10033664 TCGAAAATCA
10033674 AGAAAAGAAAAG
1 AGAAAA-AAAAG
10033686 AGAAAAAAAAG
1 AGAAAAAAAAG
**
10033697 TCAAAAAAATAG
1 AGAAAAAAA-AG
10033709 A-AAAAAAAAG
1 AGAAAAAAAAG
10033719 AGAA
1 AGAA
10033723 GAGAAAGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 3 0.09
11 21 0.66
12 8 0.25
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (11 bp):
AGAAAAAAAAG
Found at i:10037955 original size:262 final size:260
Alignment explanation
Indices: 10037460--10037977 Score: 950
Period size: 262 Copynumber: 2.0 Consensus size: 260
10037450 TTACAGGAAA
*
10037460 AGTATATTGAATGAGTGCTTAGTATATTTAACATGAAACATGCTAAATCAACTAGTAGTCTACTT
1 AGTATATTGAATGAGTGCTTAGTATATTTAACATGAAACATGCTAAATCAACTAGTAGTCCACTT
10037525 GCCAACCATTTTCATCTGAGTAAGAAATCTTATCGATGACTAAAAAAGAGCAACTAACTATGTCT
66 GCCAACCATTTTCATCTGAGTAAGAAATCTTATCGATGACTAAAAAAGAGCAACTAACTATGTCT
10037590 AGTACTCTTTATTTTTTTGCAATCAATTTTTTAATGTATCTTATGATTTGTACATGACCTGACAT
131 AGTACTCTTTATTTTTTTGCAATCAATTTTTTAATGTATCTTATGATTTGTACATGACCTGACAT
*
10037655 TGCTCATACAGTTGATGTAGTGAGCAGATTTCTTTTTAATTCGAGAAAGGTTCATTGGAAATCTT
196 TGCTCATACAGTTAATGTAGTGAGCAGATTTCTTTTTAATTCGAGAAAGGTTCATTGGAAATCTT
10037720 AGTATATTGAATGAGTGCTTAGTATATATTAACATGAAACATGCTAAATCAACTAGTAGTCCACT
1 AGTATATTGAATGAGTGCTTAGTATAT-TTAACATGAAACATGCTAAATCAACTAGTAGTCCACT
*
10037785 TGCCAACCATTTTCATCTGAGTAAGAAATCTTATCCGGTGACTAAAAAAGAGCAACTAACTATGT
65 TGCCAACCATTTTCATCTGAGTAAGAAATCTTAT-CGATGACTAAAAAAGAGCAACTAACTATGT
10037850 CTAGTACTCTTTATTTTTTTGCAATCAATTTTTTAATGTATCTTATGATTTGTACATGACCTGAC
129 CTAGTACTCTTTATTTTTTTGCAATCAATTTTTTAATGTATCTTATGATTTGTACATGACCTGAC
*
10037915 ATTGCTCA-AGCAGTTAATGTAGTGAGCATATTAT-TTTTTAATTCGAGAAAGGTTCATTGGAAA
194 ATTGCTCATA-CAGTTAATGTAGTGAGCAGATT-TCTTTTTAATTCGAGAAAGGTTCATTGGAAA
10037978 GCAATAAAAT
Statistics
Matches: 250, Mismatches: 4, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
260 27 0.11
261 71 0.28
262 151 0.60
263 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (260 bp):
AGTATATTGAATGAGTGCTTAGTATATTTAACATGAAACATGCTAAATCAACTAGTAGTCCACTT
GCCAACCATTTTCATCTGAGTAAGAAATCTTATCGATGACTAAAAAAGAGCAACTAACTATGTCT
AGTACTCTTTATTTTTTTGCAATCAATTTTTTAATGTATCTTATGATTTGTACATGACCTGACAT
TGCTCATACAGTTAATGTAGTGAGCAGATTTCTTTTTAATTCGAGAAAGGTTCATTGGAAATCTT
Found at i:10042115 original size:32 final size:33
Alignment explanation
Indices: 10042069--10042160 Score: 163
Period size: 31 Copynumber: 2.9 Consensus size: 33
10042059 TCCTAAAAAT
10042069 ATTATTTTTTAAAATATTAAATATCTTTTTTTA
1 ATTATTTTTTAAAATATTAAATATCTTTTTTTA
10042102 ATTA-TTTTTAAAATATTAAATA--TTTTTTTA
1 ATTATTTTTTAAAATATTAAATATCTTTTTTTA
10042132 ATTATTTTTTAAAATATTAAATATCTTTT
1 ATTATTTTTTAAAATATTAAATATCTTTT
10042161 ATTGTTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
30 12 0.21
31 18 0.32
32 18 0.32
33 8 0.14
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (33 bp):
ATTATTTTTTAAAATATTAAATATCTTTTTTTA
Found at i:10042141 original size:31 final size:31
Alignment explanation
Indices: 10042069--10042174 Score: 155
Period size: 31 Copynumber: 3.5 Consensus size: 31
10042059 TCCTAAAAAT
10042069 ATTATTTTTTAAAATATTAAATATCTTTTTTTA
1 ATTATTTTTTAAAATATTAAATA--TTTTTTTA
10042102 ATTA-TTTTTAAAATATTAAATATTTTTTTA
1 ATTATTTTTTAAAATATTAAATATTTTTTTA
*
10042132 ATTATTTTTTAAAATATTAAATA-TCTTTT-
1 ATTATTTTTTAAAATATTAAATATTTTTTTA
*
10042161 ATTGTTTTTTAAAA
1 ATTATTTTTTAAAA
10042175 ATATATTTTA
Statistics
Matches: 70, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
29 13 0.19
30 17 0.24
31 18 0.26
32 18 0.26
33 4 0.06
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (31 bp):
ATTATTTTTTAAAATATTAAATATTTTTTTA
Found at i:10042189 original size:14 final size:14
Alignment explanation
Indices: 10042167--10042203 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
10042157 TTTTATTGTT
10042167 TTTTA-AAAATATA
1 TTTTATAAAATATA
*
10042180 TTTTATAAAATATG
1 TTTTATAAAATATA
10042194 TTTTATAAAA
1 TTTTATAAAA
10042204 AAGAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (14 bp):
TTTTATAAAATATA
Found at i:10043415 original size:2 final size:2
Alignment explanation
Indices: 10043408--10043438 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10043398 ATTACTAGTA
10043408 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10043439 AATCAAGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10047662 original size:2 final size:2
Alignment explanation
Indices: 10047655--10047693 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10047645 ATGCTAGTTA
10047655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10047694 AGGTTGTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10052401 original size:321 final size:320
Alignment explanation
Indices: 10051654--10052608 Score: 1349
Period size: 321 Copynumber: 3.0 Consensus size: 320
10051644 CACAATTTAT
* * ** *
10051654 TGAAAAATATAAAATTGCTGAAAGTCTTTCGTTGATAATAA-A-----GTTT-TCGCAAGCAAAA
1 TGAAAAATATAAAATTGCTAAAAATCTTTCGTTGATAATAAGATTTTTGTTTGTAACAAGCAGAA
* * * * ** *
10051712 AATTAGTGACGGACTTTTTCGTTGTTAATACTTACATTTTCGTTGCTAATACTATTTGCCACTAA
66 AATTAGCGAAGGAATTTTTTGTCATTAATACTTACATTTTCGTTGCTAATACTATTTGCCATTAA
* * *
10051777 AATATTTTTCAAAATTAAAAAAAACTTCTATCGATAAGAACTATTAGTAACTAAATTTTTCATCA
131 AATATTTTTCAAAATTAAAAAAAAATTCCATCGATAAGAACTATTAGTAACTGAATTTTTCATCA
* * * * *
10051842 CTAAAATATTAGTTTTTTAATTTTATAATTAAATTCAATCAATAAAAATTATTAG-TGATAAAAA
196 CTAAAATATTAATTTTATAATTTTATAATTAAATTTAATCAATAAGAATTATTAGCT-ATAAAAT
* *
10051906 TTTCCATTGCTAAAAATATTATTTTTTAAAATTTTATAATTATATTACATCGATAAAACCT
260 TTTTCATTGCTAAAAATATTATTTTTTAAAATTTTATAATTATATTACATCGATAAAACCC
* *
10051967 TGAAAAATATAAAATTGCTAAAAATCTTTTGTTGATAATAAGGTTTTTGTTTGTAACAAGCAGAA
1 TGAAAAATATAAAATTGCTAAAAATCTTTCGTTGATAATAAGATTTTTGTTTGTAACAAGCAGAA
* *
10052032 AATTAGCGAAGGAATTTTTTGTCTTTAATACTTACATTTTCGTTGCTAATATTATTTGCCATTAA
66 AATTAGCGAAGGAATTTTTTGTCATTAATACTTACATTTTCGTTGCTAATACTATTTGCCATTAA
*
10052097 AATATTTTTCAAAATTAAAACAAAAATTCCACCGATAAGAACTATTAGTAACTGAA-TTTTCATC
131 AATATTTTTCAAAATTAAAA-AAAAATTCCATCGATAAGAACTATTAGTAACTGAATTTTTCATC
*
10052161 GCTAAAATATTAATTTTATAATTTTATAATTAAATTTAATCAATAAGAATTATTAGCTATAAAAT
195 ACTAAAATATTAATTTTATAATTTTATAATTAAATTTAATCAATAAGAATTATTAGCTATAAAAT
10052226 TTTTCATTGCTAAAAATATTATTTTTTAAAATTTTATAATTATATTACATCGATAAAACCC
260 TTTTCATTGCTAAAAATATTATTTTTTAAAATTTTATAATTATATTACATCGATAAAACCC
* * * *
10052287 T-AAAAATATATACAATTGTTGAAAATCTTTCGTTGATAATAAGATTTTTGTTTGTAATAAGTAG
1 TGAAAAATATA-A-AATTGCTAAAAATCTTTCGTTGATAATAAGATTTTTGTTTGTAACAAGCAG
* *
10052351 AAAATTAGCGATGGAATTTTTTGTCATTAATACTTACATTTTCATTGCTAATACTATTTGCCATT
64 AAAATTAGCGAAGGAATTTTTTGTCATTAATACTTACATTTTCGTTGCTAATACTATTTGCCATT
* * * *
10052416 AAAATATTTTTCAATATTAAAATGAAAATTCCATTGATAAGAACTATTAGTAATTGAATTTTTCA
129 AAAATATTTTTCAAAATTAAAA-AAAAATTCCATCGATAAGAACTATTAGTAACTGAATTTTTCA
* * * * * *
10052481 TCATTAAAATATTAATTTTATGATTTTATAATTAAATTTAATCGATATGAATTATTAGCAACATA
193 TCACTAAAATATTAATTTTATAATTTTATAATTAAATTTAATCAATAAGAATTATTAGCTATA-A
* * *
10052546 AATTTCT-ATTGCTAAAAA-ATTATTTTTTAAAATTTTATAATTATATTACATTGGTAAAACCC
257 AATTTTTCATTGCTAAAAATATTATTTTTTAAAATTTTATAATTATATTACATCGATAAAACCC
10052608 T
1 T
10052609 TCATTGACAA
Statistics
Matches: 576, Mismatches: 53, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
313 38 0.07
319 13 0.02
320 212 0.37
321 233 0.40
322 73 0.13
323 7 0.01
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.41
Consensus pattern (320 bp):
TGAAAAATATAAAATTGCTAAAAATCTTTCGTTGATAATAAGATTTTTGTTTGTAACAAGCAGAA
AATTAGCGAAGGAATTTTTTGTCATTAATACTTACATTTTCGTTGCTAATACTATTTGCCATTAA
AATATTTTTCAAAATTAAAAAAAAATTCCATCGATAAGAACTATTAGTAACTGAATTTTTCATCA
CTAAAATATTAATTTTATAATTTTATAATTAAATTTAATCAATAAGAATTATTAGCTATAAAATT
TTTCATTGCTAAAAATATTATTTTTTAAAATTTTATAATTATATTACATCGATAAAACCC
Found at i:10056310 original size:25 final size:25
Alignment explanation
Indices: 10056280--10056335 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
10056270 ATATATAAAT
10056280 ATATTCATTATAGCCTAATAAACAA
1 ATATTCATTATAGCCTAATAAACAA
* * *
10056305 ATATTCATTATAGTCTAATGAATAA
1 ATATTCATTATAGCCTAATAAACAA
10056330 ATATTC
1 ATATTC
10056336 TAAATATCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (25 bp):
ATATTCATTATAGCCTAATAAACAA
Found at i:10062080 original size:3 final size:3
Alignment explanation
Indices: 10062072--10062117 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
10062062 ACTTACTTAA
10062072 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10062118 TATACATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10070475 original size:22 final size:22
Alignment explanation
Indices: 10070450--10070492 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10070440 AGGGTGTAAC
*
10070450 AAAAAATAAAAAAAATGAAAAA
1 AAAAAATAAAAAAAAGGAAAAA
*
10070472 AAAACATAAAAAAAAGGAAAA
1 AAAAAATAAAAAAAAGGAAAA
10070493 CATAAATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.84, C:0.02, G:0.07, T:0.07
Consensus pattern (22 bp):
AAAAAATAAAAAAAAGGAAAAA
Found at i:10071539 original size:43 final size:44
Alignment explanation
Indices: 10071477--10071568 Score: 125
Period size: 43 Copynumber: 2.1 Consensus size: 44
10071467 TTAAAGGAGC
* *
10071477 TTTTCAAATGAGATTCTTTAAATTTT-GTATGTGAATCCCAAAAT
1 TTTTCAAATGAAAATCTTTAAATTTTAG-ATGTGAATCCCAAAAT
* *
10071521 TTTTC-AATGAAAATCTTTAACTTTTAGATGTGAATCCCAAAGT
1 TTTTCAAATGAAAATCTTTAAATTTTAGATGTGAATCCCAAAAT
10071564 TTTTC
1 TTTTC
10071569 GAATAAGTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 37 0.86
44 6 0.14
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (44 bp):
TTTTCAAATGAAAATCTTTAAATTTTAGATGTGAATCCCAAAAT
Found at i:10071833 original size:17 final size:17
Alignment explanation
Indices: 10071782--10071876 Score: 66
Period size: 19 Copynumber: 5.2 Consensus size: 17
10071772 TCTTTTAATC
10071782 TCTTACGAA-TATGAATT
1 TCTTACGAACT-TGAATT
*
10071799 TCTTATGAACCTTTGAATT
1 TCTTACGAA-C-TTGAATT
*
10071818 TTTTACGAACTTGAATT
1 TCTTACGAACTTGAATT
* * *
10071835 TCTTATGAATCTCTAAACT
1 TCTTACGAA-CT-TGAATT
*
10071854 TCTTATGAATCTTTGAATT
1 TCTTACGAA-C-TTGAATT
10071873 TCTT
1 TCTT
10071877 GTAAAACCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
17 22 0.35
18 3 0.05
19 36 0.57
20 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.47
Consensus pattern (17 bp):
TCTTACGAACTTGAATT
Found at i:10071911 original size:17 final size:20
Alignment explanation
Indices: 10071869--10071914 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 20
10071859 TGAATCTTTG
10071869 AATTTCTTGTAAAACCTTAT
1 AATTTCTTGTAAAACCTTAT
*
10071889 AATTTCTTG-AAAA-TTTA-
1 AATTTCTTGTAAAACCTTAT
10071906 AATTTCTTG
1 AATTTCTTG
10071915 CGAATCTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 9 0.36
18 3 0.12
19 4 0.16
20 9 0.36
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.48
Consensus pattern (20 bp):
AATTTCTTGTAAAACCTTAT
Found at i:10071978 original size:17 final size:18
Alignment explanation
Indices: 10071956--10072003 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
10071946 TTATTGCAAA
10071956 CTTGAATTTCTTATGAAT
1 CTTGAATTTCTTATGAAT
*
10071974 C-TGAATTTCTTGTGAAT
1 CTTGAATTTCTTATGAAT
10071991 CTTTGAATTTCTT
1 C-TTGAATTTCTT
10072004 GCAAAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.59
18 1 0.04
19 10 0.37
ACGTcount: A:0.23, C:0.12, G:0.12, T:0.52
Consensus pattern (18 bp):
CTTGAATTTCTTATGAAT
Found at i:10071999 original size:36 final size:36
Alignment explanation
Indices: 10071769--10072027 Score: 152
Period size: 36 Copynumber: 7.1 Consensus size: 36
10071759 TCTTTGAAGC
* * * *
10071769 GAATCTTTTAATCTCTTACGAATATGAATTTCTTAT
1 GAATCTTTGAATTTCTTACGAATCTGAATTTCTTGT
* * *
10071805 GAACCTTTGAATTTTTTACGAA-CTTGAATTTCTTAT
1 GAATCTTTGAATTTCTTACGAATC-TGAATTTCTTGT
* * * *
10071841 GAATCTCTAAACTTCTTATGAATCTTTGAATTTCTTGT
1 GAATCTTTGAATTTCTTACGAATC--TGAATTTCTTGT
* * * * * *
10071879 AAAACCTTAT-AATTTCTTGA-AAATTTAAATTTCTTGC
1 -GAATCTT-TGAATTTCTT-ACGAATCTGAATTTCTTGT
* * *
10071916 GAATCTTTG-ATTTTTTACGAATATTTGAATTTATTG-
1 GAATCTTTGAATTTCTTACG-A-ATCTGAATTTCTTGT
* * *
10071952 CAAAC-TTGAATTTCTTATGAATCTGAATTTCTTGT
1 GAATCTTTGAATTTCTTACGAATCTGAATTTCTTGT
* * *
10071987 GAATCTTTGAATTTCTTGCAAAATTTTGAATTTCTTGT
1 GAATCTTTGAATTTCTTAC-GAA-TCTGAATTTCTTGT
10072025 GAA
1 GAA
10072028 ACAAAAGCTT
Statistics
Matches: 170, Mismatches: 38, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
34 13 0.08
35 14 0.08
36 74 0.44
37 25 0.15
38 28 0.16
39 14 0.08
40 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47
Consensus pattern (36 bp):
GAATCTTTGAATTTCTTACGAATCTGAATTTCTTGT
Found at i:10072004 original size:19 final size:19
Alignment explanation
Indices: 10071793--10072003 Score: 138
Period size: 19 Copynumber: 11.5 Consensus size: 19
10071783 CTTACGAATA
*
10071793 TGAATTTCTTATGAACCTT
1 TGAATTTCTTATGAATCTT
* *
10071812 TGAATTTTTTACGAA-C-T
1 TGAATTTCTTATGAATCTT
*
10071829 TGAATTTCTTATGAATCTC
1 TGAATTTCTTATGAATCTT
* *
10071848 TAAACTTCTTATGAATCTT
1 TGAATTTCTTATGAATCTT
* * *
10071867 TGAATTTCTTGTAAAACCTT
1 TGAATTTCTTAT-GAATCTT
**
10071887 AT-AATTTC-T-TGAAAATT
1 -TGAATTTCTTATGAATCTT
* **
10071904 TAAATTTCTTGCGAATCTT
1 TGAATTTCTTATGAATCTT
* * *
10071923 TG-ATTTTTTACGAATATT
1 TGAATTTCTTATGAATCTT
* *
10071941 TGAATTT-AT-TGCAAAC-T
1 TGAATTTCTTATG-AATCTT
10071958 TGAATTTCTTATGAATC--
1 TGAATTTCTTATGAATCTT
*
10071975 TGAATTTCTTGTGAATCTT
1 TGAATTTCTTATGAATCTT
10071994 TGAATTTCTT
1 TGAATTTCTT
10072004 GCAAAATTTT
Statistics
Matches: 149, Mismatches: 30, Indels: 26
0.73 0.15 0.13
Matches are distributed among these distances:
16 1 0.01
17 49 0.33
18 26 0.17
19 61 0.41
20 11 0.07
21 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.48
Consensus pattern (19 bp):
TGAATTTCTTATGAATCTT
Found at i:10072186 original size:17 final size:16
Alignment explanation
Indices: 10072160--10072196 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 16
10072150 TTTGAAAAGT
10072160 CCTTGTGAATCTAGAA
1 CCTTGTGAATCTAGAA
10072176 CCTTCGTGAATCTAGAA
1 CCTT-GTGAATCTAGAA
10072193 CCTT
1 CCTT
10072197 TGCGAAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (16 bp):
CCTTGTGAATCTAGAA
Found at i:10072186 original size:87 final size:86
Alignment explanation
Indices: 10072087--10072257 Score: 227
Period size: 87 Copynumber: 2.0 Consensus size: 86
10072077 GCGAACCCAA
* * *
10072087 AACCTTTGTGAATCTAGAACCTCTACAAAATTTAAAATTTTACGAATC-TTCTATTCTTGTGAAT
1 AACCTTCGTGAATCTAGAACCTCTACAAAACTTAAAATCTTACGAATCTTTC-ATTCTTGTGAAT
10072151 TTGAAAAGTCCTTGTGAATCTAG
65 TTGAAAA-TCCTTGTGAATCTAG
* * * * **
10072174 AACCTTCGTGAATCTAGAACCTTTGCGAAACTTGAAATCTTGTGAATCTTTCATTCTTGTGAATT
1 AACCTTCGTGAATCTAGAACCTCTACAAAACTTAAAATCTTACGAATCTTTCATTCTTGTGAATT
*
10072239 TGAAAATCTTTGTGAATCT
66 TGAAAATCCTTGTGAATCT
10072258 GAAATCTTTA
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
86 12 0.16
87 58 0.79
88 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (86 bp):
AACCTTCGTGAATCTAGAACCTCTACAAAACTTAAAATCTTACGAATCTTTCATTCTTGTGAATT
TGAAAATCCTTGTGAATCTAG
Found at i:10072266 original size:17 final size:17
Alignment explanation
Indices: 10072143--10072266 Score: 58
Period size: 17 Copynumber: 7.1 Consensus size: 17
10072133 TCTTCTATTC
* *
10072143 TTGTGAATTTGAAAAGTCC
1 TTGTGAATCTG-AAA-TCT
*
10072162 TTGTGAATCT-AGAACCT
1 TTGTGAATCTGA-AATCT
* *
10072179 TCGTGAATCT-AGAACCT
1 TTGTGAATCTGA-AATCT
* *
10072196 TTGCGAAACTTGAAATC-
1 TTGTGAATC-TGAAATCT
***
10072213 TTGTGAATCTTTCAT-T
1 TTGTGAATCTGAAATCT
*
10072229 CTTGTGAATTTGAAAATCT
1 -TTGTGAATCTG-AAATCT
10072248 TTGTGAATCTGAAATCT
1 TTGTGAATCTGAAATCT
10072265 TT
1 TT
10072267 AAAAGTCTGA
Statistics
Matches: 80, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
16 3 0.04
17 48 0.60
18 18 0.22
19 11 0.14
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40
Consensus pattern (17 bp):
TTGTGAATCTGAAATCT
Found at i:10072292 original size:86 final size:87
Alignment explanation
Indices: 10072130--10072307 Score: 215
Period size: 86 Copynumber: 2.0 Consensus size: 87
10072120 AAAATTTTAC
*
10072130 GAATCTTCTATTCTTGTGAATTTGAAAAGTCCTTGTGAATCTAGAACCTTCGTGAATCTAGAACC
1 GAATCTTCTATTCTTGTGAATTTGAAAAGTCCTTGTGAATCTAGAACCTTC-TAAATCTAGAACC
*
10072195 TTTGCGAAACTTGAAA-TCTTGT
65 TTTGCGAAACTTAAAACTCTTGT
* *
10072217 GAATCTT-TCATTCTTGTGAATTTGAAAA-TCTTTGTGAATCT-GAAATCTT-TAAAAGTCT-GA
1 GAATCTTCT-ATTCTTGTGAATTTGAAAAGTCCTTGTGAATCTAG-AACCTTCT-AAA-TCTAG-
*
10072277 AACCTTTGCGAAACTTAAAACTTTTGT
61 AACCTTTGCGAAACTTAAAACTCTTGT
10072304 GAAT
1 GAAT
10072308 TTGAAAATTT
Statistics
Matches: 80, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
84 1 0.01
85 4 0.05
86 40 0.50
87 35 0.44
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (87 bp):
GAATCTTCTATTCTTGTGAATTTGAAAAGTCCTTGTGAATCTAGAACCTTCTAAATCTAGAACCT
TTGCGAAACTTAAAACTCTTGT
Found at i:10072542 original size:23 final size:22
Alignment explanation
Indices: 10072511--10072557 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
10072501 CTTTGAAATT
*
10072511 TTGTGAATCATTAAATTTTCAAA
1 TTGTAAATCATTAAATTTT-AAA
*
10072534 TTGTAAATCTTTAAATTTTAAA
1 TTGTAAATCATTAAATTTTAAA
10072556 TT
1 TT
10072558 TTTAGTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (22 bp):
TTGTAAATCATTAAATTTTAAA
Found at i:10072553 original size:7 final size:7
Alignment explanation
Indices: 10072521--10072559 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
10072511 TTGTGAATCA
10072521 TTAAATT
1 TTAAATT
10072528 TTCAAATT
1 TT-AAATT
*
10072536 GTAAATCT
1 TTAAAT-T
10072544 TTAAATT
1 TTAAATT
10072551 TTAAATT
1 TTAAATT
10072558 TT
1 TT
10072560 TAGTTTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 16 0.57
8 12 0.43
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (7 bp):
TTAAATT
Found at i:10072561 original size:15 final size:15
Alignment explanation
Indices: 10072521--10072561 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
10072511 TTGTGAATCA
*
10072521 TTAAATTTTCAAATT
1 TTAAATTTTTAAATT
* *
10072536 GTAAATCTTTAAATT
1 TTAAATTTTTAAATT
10072551 TTAAATTTTTA
1 TTAAATTTTTA
10072562 GTTTGTTTGA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (15 bp):
TTAAATTTTTAAATT
Found at i:10074122 original size:21 final size:21
Alignment explanation
Indices: 10074098--10074166 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
10074088 ATAAATTTAT
10074098 AAATTTTATTAAATTATTAAA
1 AAATTTTATTAAATTATTAAA
10074119 AAA---T-TTAAATT-TTAAA
1 AAATTTTATTAAATTATTAAA
* * *
10074135 TTAAATCTTATCACATTATTAAA
1 --AAATTTTATTAAATTATTAAA
10074158 AAATTTTAT
1 AAATTTTAT
10074167 ATATTTTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
16 5 0.13
17 7 0.18
18 4 0.11
21 12 0.32
22 5 0.13
23 5 0.13
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (21 bp):
AAATTTTATTAAATTATTAAA
Found at i:10076187 original size:26 final size:26
Alignment explanation
Indices: 10076157--10076208 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10076147 TTGACTTAGA
*
10076157 CATACGGAATTCATTCCCAGTCTAAG
1 CATACAGAATTCATTCCCAGTCTAAG
* *
10076183 CATACAGAGTTCATTCTCAGTCTAAG
1 CATACAGAATTCATTCCCAGTCTAAG
10076209 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAATTCATTCCCAGTCTAAG
Found at i:10078862 original size:26 final size:26
Alignment explanation
Indices: 10078826--10078878 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10078816 GTTCACTTAG
10078826 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10078852 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10078878 G
1 G
10078879 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10079749 original size:26 final size:26
Alignment explanation
Indices: 10079715--10079765 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10079705 TGACTTAGGC
10079715 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
10079741 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
10079766 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:10080625 original size:26 final size:26
Alignment explanation
Indices: 10080595--10080647 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10080585 GTTGACTTAG
10080595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10080621 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10080647 G
1 G
10080648 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10081522 original size:26 final size:26
Alignment explanation
Indices: 10081486--10081538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10081476 GTTGACTTAG
*
10081486 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
10081512 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
10081538 G
1 G
10081539 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:10082414 original size:26 final size:26
Alignment explanation
Indices: 10082385--10082437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10082375 GTTGACTTAG
10082385 GCATAAAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
** *
10082411 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
10082437 G
1 G
10082438 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:10083332 original size:26 final size:26
Alignment explanation
Indices: 10083296--10083348 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10083286 GTTGACTTAG
*
10083296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
10083322 GCATACGGAGTTCATTCTCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
10083348 G
1 G
10083349 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:10084188 original size:900 final size:899
Alignment explanation
Indices: 10074618--10095028 Score: 25644
Period size: 899 Copynumber: 22.9 Consensus size: 899
10074608 ATTAACTCTT
* * * * * * * ** *
10074618 TATCCCTCATCAAATCTCGAAAATTTACA-CTCCTTAAAAAGCATTTAAGATTTTACAAATTTAC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * ** *
10074682 TGTCAGTAGTCATTAAAGTATCTGAAATGAAGATA-TTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
10074746 ACTTCGAGTTTTTACCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGAATCACGTCTGCCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* ** *
10074811 GTTTAGGGCCAAAA-TCCCTTCCGAAAAAATTTTAAAAAAT-TCTGAACCGTTAAAAGTTTCAAA
196 GTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTAAA
*
10074874 AATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCAT
259 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCAT
* * *
10074939 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCTTAAACTC
324 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * ** ***
10075004 AACTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGATCGATATAGTGCCCGCCCG
389 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * *
10075069 CCCGTCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGATC
454 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** * ** * * *
10075134 GGACTGAGGGTTATGGCAGCAGGATCGATAGCACGCAGAGGTGGACCCGACCGATCCTCGGCTTT
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
10075199 CGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACACACATTTCGTGGGTTGACTTAGGCATAT
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-
* ** ** *
10075264 C-GAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATTGAAG
648 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * *
10075328 GTTGTGGCAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACT
713 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
* * *
10075392 ATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGG
777 ATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *** *
10075457 GGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTGCTTCATCTTTATATTGAG-CCCC
842 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTG-GCCCCC
* * *
10075515 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
** *
10075580 TGCCAGTAGATATT-AAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
10075644 ATTTCGAGTTTTTAGTTGAATTTTTTTGTGCGTGCCAACAAAAATACGAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * * *
10075709 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
* *
10075774 TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
** * *
10075839 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGATGATGTGCCAAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * ** * * * * *
10075904 CTACCACCCTATTGATTCACAACTTGCGCATCCTGCCTCTCTGGCTGGCGTAGTGCCTGCCCGTC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
10075969 CGCCCGTTCGTTTCGCCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
456 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* ** * ** * * *
10076034 ACGGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGTCGATCCTCGACTTGCC
521 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * * *
10076099 CATCTCGCCCCTCTGGCCGGCTGAGCACCCGTACGTTTGTTTCATGGGTTGACTTAGACATACGG
586 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
10076164 AATTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTT
651 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * ** * * *
10076229 ACGGCAGCACATGTTGGGCTCGGACATGTGCTGGTGCCATACTTTTCTTCATCAGGGCACCATCG
716 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
** * * * ** * * *
10076294 TCGGAGCATCACCGAAGAACTTGACCGGCGGCATTACGGTTTCGGCGATCGGGGGGGTCGGGGGG
781 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGG
* *
10076359 GTGTGCGCACATGATGTACAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
845 GTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
*
10076414 TATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
10076479 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTA
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
10076544 CACTTCGAGTTTTTACCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTGCCA
130 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * *** *
10076609 AGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATTAAAAGTTTCAAAA
195 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAA
* * *
10076674 ATCATGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACTATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
10076739 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * *
10076804 CCTGCTACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGACCGGCATAGTGTCCACCCG-
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * *
10076868 -C--CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCG
455 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* ** * * ** *
10076930 GACTGAGGGTTATGGCAGCAAGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTTC
520 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
10076995 GCATCCCGCTCCTCTGGCCGGCTGAACGCCCGCACACACATTTCGTGGGTTGACTTAGGCATATC
585 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-C
* ** *
10077060 -GAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
10077124 TTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCACCA
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCA
10077188 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGA
778 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-
* * * *** *
10077253 GGGGGTATGCGCACATGATGTACGATGGGTGCTAGTGCTTCATCCTTATATTGGCACCC
841 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* *
10077312 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
** *
10077377 TGCCAGTAGATATT-AAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10077441 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * *
10077506 GTTTTGGGCCAAAAATCCTTCC-AAAAAATTTTAAAAAATCCCAAACCG-AAATAAGTTTCAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA-AAGTTTTAAAA
** *
10077569 ATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACAAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
* * * *
10077634 GTATGAATTTACAAGCCATAAAAATGGTATTGGCATGAAGAAATATGAAAATGTGCCTAAACTCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * **
10077699 CCTACCACTCTATCGATCCACGGCTTGCACATCCCGCCTCTTTGGCCGGCGTAGTGCCCGTCTAC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
10077764 CCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTTCCAGTCTAAGATTGGACCG
455 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * * * **
10077829 GATCGAGGGTGGCGGTAGCAAGATTGGCAGCACGCAGTGGGGGACCCGACCGATCCCCGACTTAT
520 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * *
10077894 GCATCTCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTC----G-TG-----GGC-T---
585 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
10077945 GA---C-TT---AG-----GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGT
650 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* ** * * * ** * *
10077998 TACGATAGCACATGCTAGGCTCAGGCATGTGCTAGTGCCATACTTTTCTTTGTCGGGGCACCATC
715 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * *
10078063 GTCGGAGCATCATCAGAGAACCTGATCGACGGCATTGTGGTTCCGACGATC-GGGTGGCCGAGAG
780 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--G-G
10078127 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
842 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * *
10078185 TATCCCTCATCAAATCTTGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * **
10078250 TGCCAGTAGCCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGCCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
10078315 ACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * *
10078380 GTTTGGGGCCAAAACTCGTTCCGAAAAGATTTTAAAAAATC-CAGAATCGTAAAAAGTTTTAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTAAAA
* *
10078444 ATCGTGAAATATAAAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
* * * *
10078509 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAAATGTTCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * **
10078574 CCTTCCACTCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTAGCCGGCGTAGTGCCCGCCTAC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
10078638 CTG-CCGCTCGTTTTCGTCGGTTGGCCTAGGCATACGGAGTTTATTCTCTGTCTAAGATCGGACC
455 CCGTCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** ** * * * **
10078702 GGACTGAGGGTTATGACAGTAGGATCGACAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTG
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
10078767 CGCATCCCGCCCCTTTGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTCACTTAGGCATAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
10078832 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
*
10078897 -T-----------TGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * *
10078950 CGTCGGAGCATCGTCGGGGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
779 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* *
10079015 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGGCCTC
844 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * *
10079071 TATCCCTCATCTAACCTCGAGAACTCACACCACCTTAAAGAGCAATTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
10079136 TGCCAGTAGCAATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
10079201 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAGCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* **
10079266 GTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
*
10079331 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
* ***
10079396 TATGAATTTACAAGCCATAAAAATGACATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
10079461 CTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
10079526 CGTCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCGG
456 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * * ** * * * *
10079591 ACTGAGGGTTGCGGCAGCAAGATTGGCAGCATGCAGAAAGGGACCTGGCCGATCCCCGACTTGCA
521 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * * *
10079656 CATCCCGCCTCTCTGGCCGGCTGGGCGCCCGCACACTAGTTTCATGGGTTGACTTAGGCATACAG
586 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
10079721 AGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGATCC-AGGG
651 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GA-CCGAGGG
* * * *
10079784 TTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTACTGCATTTTTCTACGTCGGGG---CA-
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* *
10079845 ---C----CATCGTCGGAGAACTTGACCGACGG-ATTGGGGTTCCGATGATC-GGGGGGCCGGGG
779 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GG
*
10079901 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGACCCTTATATTGGCCCCC
842 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * * *
10079959 TATCCCTCATCAAACCTCGAGAACTCAAACCCCCGTAAAGAGTAGTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
10080024 TGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10080089 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * *
10080154 GTTTGGGGTGAAAACTTCTTCCGAAAAGATTTTAAAAAATC-CTGAACCG-TAAAA-TTTTAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTT-AAA
* * * *
10080216 AATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACACGAAGGCTTAAAGGACTAT
259 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCAT
* *
10080281 TGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATATTAAGATGTGCCTAAACCC
324 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
10080346 ACCTACCACCCTAACGTTCCACTGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGT----GCCCG
389 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * *
10080407 CCCGTCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCAGACC
454 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** ** * ** ** *
10080472 AGACTGAGGGTTGTAGTAGCA-GATCAACAGCACGTAGAGAAGGACCCGGTCGATCCCCGACTTG
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * * * *
10080536 CGCATCCAGCCCCTCTGGCCGACTGTGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
10080601 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* ** ** *
10080666 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGAGGCACCAT
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * * * *
10080731 CCTAGGAGCATCGTCGTAGAACCTGATCGACGGCATTTGGGTTTCGACGATCGGGGGGGTCGGAG
779 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-G
* * *
10080796 GGGTGTGCACACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATTTTGGCCCCC
843 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
10080853 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
10080918 TGCCAGTAGCCATTAAAGTGCCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
10080983 ACTTCGAGTTTTTAGCTG-ATTTTTTTTTACATGCCAACAAAAATACAAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * * *
10081047 GTTTGGGACAAAAAATCCTTCCGAAAAGATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTAAAA
* * *
10081111 ATCATGAACAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAAGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
*** ** *
10081176 GTATGAATTTACAAGCTGCAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
10081241 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGT----GCCCG-
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
10081301 -C--CCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
455 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * * ** * * *
10081363 GACCGAGGGTTACAGTAGCAGGATCGACAGCACGCAAAGAGGGAATCGACAGGTCCCCGACTTGC
520 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * ** *
10081428 GCATCCCACCCCTCTGGTCGGTTGATTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACG
585 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
10081493 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTATAAGATCGGACCAGACCGAGGGT
650 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * *
10081558 TGCGGCAGCACATGCTAGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTTGCCAGGGCACCATC
715 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* ** *
10081623 GTCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATC-GAGGGGCCGGGGG
780 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG
*
10081687 GGTTGTGCACACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
844 GG-TGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * * * *
10081744 TATCCCTCATCAAAACTGGAGAACTCACTCTCCCTTAAAGACCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
10081809 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
10081874 ACTTCGAGTTTTTAGCTGAATTTTTTTTGTACACGCCAAAAAAAAATACATGGATCATGTCTACC
131 ACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACC
* *
10081939 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTTAAAAATCTCGAACCG-AAAAAGTTTTAAA
194 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAA
* * *
10082003 AATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGATACTTCACACGAAGGCTTAAGGGACCAT
259 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCAT
10082068 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT-CCTAAACCC
324 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * * *
10082132 ACCAAACACGCTATCGATCTACGGCTTACGCATCCCGCCTCTC-GGCCGGCATAGTGCCCACCCG
389 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * * *
10082196 TCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACC
454 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
10082261 AGATCGAGGGCTACGATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
10082326 TGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATAA
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * **
10082391 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * ** **
10082456 TTGCGGTAGCACATGCTGGGCTTGGG-ATGTGCTGTTGCCATATTTTTCTTCAACGGGGCACCAT
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
** * * * * * * * *
10082520 CACCGGAGCATCGCCAGAGAACTTGACCGACGACATTAGGGTTCCGGCGATCAGGGGGGCCAGGG
779 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * **
10082585 GGTGTGCGCAGATGATGTACGATGGGTGCTACTGCTTGG-CCTTATACTTGG-CCCC
844 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATA-TTGGCCCCC
*
10082640 TAT-CCTCATCAAAACCATCTCGAGAA-TCACCTCCCCCCTTAAAGCAGCATTTGAAGAATTTTA
1 TATCCCTCATC-AAA-C--CTCGAGAACTCA-C-ACCCCCTTAAAG-AGCATTTG-AG-ATTTTA
* *
10082703 CAGGTTTGCTGGCCAGTAGCCCATTAAAGTGCCTTAAATGGGGACACTTTTTTCAAATGGTCAC-
57 CAGGTTTGCT-GCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
10082767 AAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTCTACATG-CAAACAAAAATACAAGGAT
120 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGAT
* * *
10082831 CACGTCTAACCAAAG-TTGGCGGCAAAAAAAATCCTTTCTGACAAAGAATTTTAAAAAATC-CTG
184 CACGTCT-ACC-AAGTTTGG-GGC--CAAAACTCC-TTCCGA-AAA-AATTTTAAAAAATCTC-G
* * * *
10082894 AACCG-TAAAAGTTTCAAAAAATCATGAACAATAGAAAACGAGTCGTCTTG-CATG-AACTTCAC
240 AACCGCAAAAAGTTT-TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * **
10082956 AAGAAGGGCTTAAAGGGACCGCATCTGTATGAATTTACAAGCTATAAAAAATGGCATTGGCACAC
304 ACGAA-GGCTT-AAGGGA-C-CAT-TGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGC
* *
10083021 AGAAAATAATGAAGCATGGGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGGCATCC
363 AG-AAAT-ATGAAG-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCC
* * * *
10083086 CGTCTATCTAGCCGGCATAGT----GCCCG--C--CCGCTCGTTTCGTCAGTTGGCTTAGGCATA
424 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *** ** * *
10083143 CGGAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTTACAACAATAGGATCGACATCACG
489 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * * **
10083207 CAAAGGGGGAACCGACCGGTCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGATTGCCCGCA
554 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
10083272 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
619 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
10083337 TCTCAGTATAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
684 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
** * * ** *
10083402 GTGCCATATTTTTCTTTGCCGGGGCACCATCGTCAAAGCATCGTCGGAGAACCTGACCGACGGTA
749 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
** * *
10083467 TTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGGCTGTGCACACATGATGTGCGATGGGTGCTGGT
814 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGT
*
10083532 GCTTGGCCCTTATATTGGCCCCA
877 GCTTGGCCCTTATATTGGCCCCC
* * * *
10083555 TATCCCTCATCAAAACTGGAGAACTCACTCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
10083620 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTATAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
10083685 ACTTCGAGTTTTTAACTGAATTTTTTTGTGCACGCCAAAAAAAATACAAGGATCATGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * *
10083750 GTTTGTTGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCTCGACCCGCAAAAAGTTTTGAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
* * * * *
10083815 TCGTAAAAAAGAAAAAACGAGTCGTCTTGCCATGATACTTCACACGAAGGCTTAACGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
*
10083880 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT-CCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * ** * * ** *
10083944 CAAACACCCTATCGATTTACGGCTTGCACATCCCGGCTCTCTGGCCGGTATAGTGCCCACCCGCC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
10084009 CGTCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAG
456 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * *
10084074 ACCGAGGGCTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGTG
521 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
10084139 CATCCCGCCCCTCTGGTCGGCTGAGCGCTCGCATGCTCGTTCCGTGGGTTGACTTAGGCATACAG
586 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** *
10084204 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGATCGAGGGTT
651 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* ** * * ** *
10084269 GCGGTAGCACATGCTGGGCTTAGG-ATGTGCTGTTGCCGTATTTTTCTTCAACGGGGCACCATCA
716 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * * *
10084333 CCGGAGCATCGCCAGAGAACTTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGGCCAGGGGG
781 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
10084398 TGTGCGCAGATGATGTGCGATGGGTGCTGTTGCTTGGCCCTTATATTGGCCCCC
846 TGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * *
10084452 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACTGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
10084517 TGTCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTATAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10084582 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * * * * *
10084647 GTTTTGGGCCAAAAATCCTTCC-AAACAAATTTTAAAAAATCCCAAACTGAAAAAAGTTTCAGAA
196 GTTTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAA
*
10084711 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACAAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
** *
10084776 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATTAAGAAATATGAAAATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * * *
10084841 CATACCACTCTATCGATCCACGGCTTGCACATCCCGCCTCTTTGGCCGACGTAGTGCCTGCCCAC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
*
10084906 CCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
455 CCGTCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * * *
10084970 GGATCGAGGGTGGCGGTAGCAGGATTGGTAGCACGCAGTGGGGGACCCAACCGATCCCCGGGTTA
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
10085035 TGCATCTCGCCTCTCTGGCCGGCTGGGCGCCCGTACGCTCGTTTC----G-TG-----GGC-T--
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
10085087 -GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
** * * * * *
10085139 TTGCAACAGCACATGCTAGGCTCAGGCATGTGCTAGTG--TCATACTTTCTT-GTC-GGGCA-CA
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCA
* * * * *
10085199 TCG-CGAAGCATCATCAGAGAA-CTGATC-ACGGCATT-GGG-T-CG-CGATCGGGCGGG-C-GG
778 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
10085255 GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
843 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* *
10085312 TATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* **
10085377 TGCCAGTAGCAATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAGCCTTGTA
66 TGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
10085441 CACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCA
130 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* **
10085506 AGTTTGGGGCCAAAACTCCTTCCGAAAAGATTTTAAAAAATCTCGAATAGCAAAAAGTTTTAAAA
195 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAA
10085571 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
* * * * *
10085636 GTATGAATTTACAAGCCAAAAAAATGGCATTGGCAAGTAGAAATATGAAAATGTGCTTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
** * * * *
10085701 CCTTTCACTCTATCGATCCACGGCTTGCGCATCCCGGT-TCTCTAGCCGACGTAGTGCCCGCCCA
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
10085765 CCCGTCCGCTCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGAACC
454 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * **
10085830 GGACTGAGGGTTACGATAGTAGGATCGACAGCACGCAGAGGGGGACCCGTTCGATCCCCGGCTTG
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
10085895 CGCATCCCACCCCTTTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
10085960 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCGGATCAGACAGAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
10086025 -T-----------TGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCCGCCC
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG-C-ACC
** * *
10086078 ATCGTCGGAGCATCGTCGGAGAATTTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGG
777 ATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *
10086143 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGGCCTC
842 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * * *
10086201 TATCCCTCATCTAACCTTGAGAACTCACACCACCTTAAAGAGCAATTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
10086266 TACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
10086331 ACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGGCTAGCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * **
10086396 GTTTGTGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
10086461 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
*
10086526 TATGAATTTACAAGCCATAAAAATGACATTGGCCCAT--AGAAATATGAAGATGTGCCTAAACCC
326 TATGAATTTACAAGCCATAAAAATGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
10086589 ACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGCCTCTCTAGTCGACGTAGTGCCCGCCCG
389 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
**
10086654 CCCGTCCCGCTCGTTTCGTCTATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
454 CCCGT-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* ** * * * * ** * ** **
10086719 CGGATTGAGGGTTGCGGTAGCAGGATTGGTAGCATGCAAAAAGGGACCTGGTCGATCCCCGATTT
518 CAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* ** * * * *
10086784 GCGTATCCCGCTTCTCTGGCCGGCTGGGTGCCCGCACACTAGTTT-GATGGGTTGACTTAGGCAT
583 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCAT
* * *
10086848 ACAGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGATCC-
647 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GA-CCG
* * * *
10086911 AGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTACGTCGGGG--
710 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
*
10086974 -CA----C----CATCGTCGGAGAACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTC
775 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C
*
10087030 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
839 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * * * * *
10087091 TATACCTCATCAAATCTCGAGAACTCAAACCCCCGTAAAGAGTAGTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
10087156 TGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
10087221 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAATACGAGGATCACATCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * * * *
10087285 GTTTGGGGTGAAAACTTCGTCCGAAAAGATTTTAAAAAATCCCGAACCG-TAAAA-TTTTAAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTT-AAAA
* *
10087348 ATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
*
10087413 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
10087478 CCTGCCACCCTATCGATCCACGGCTTGCGCAGCCCGCCTCTCTGGCCGACGTAGT----GCCCGC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* ** * * *
10087539 CCGTCCGCTTGTTTCGTCAATTGGCTTAGGCATACGTAGTTCATTCCCAGGCTAAGATCAGACCA
455 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* ** * * *** *
10087604 GACTGAGGGTTGTAGTAGCAGGATCGGCAGCACGTAAAGAAAGACCCGACCGATCCCCGACTTGC
520 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * * * *
10087669 GCATCCAGCCCCTCTAGCCGACTGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAGGCATACG
585 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
10087734 AAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGT
650 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * **
10087799 TGCGACAGCACATGCTGGGCTCGGGCCTGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC
715 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * *
10087864 CTAGGAGCATCGTCGTAGAACCTGATCGACGGCATTGGCGTTTCGATGATCGGGGGGGCCGGGGG
780 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
*
10087929 GTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATTTTGGCCCCC
845 GTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
*
10087984 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
10088049 TGCCAGTAGCCATTAAAGTGCCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
10088114 ACTTCGAGTTTTTAGCTGAATTTTTTTTTACATGCCAAAAAAAATACAAGGATCATGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * *
10088179 GTTTGGGGCAAAAACTCCTTCCGAAAAGATTTTAAAAAATCTTGAA-CGTTAAAAAATTTTAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG-CAAAAAGTTTTAAAA
* * **
10088243 ATCGTGAAAAATAAAAAACGAGTCGTCTTGGCATGATGCTTCACACGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
*
10088308 GTATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAGAAATATGAAGATGT-CCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
10088372 CCAAACACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
10088437 CCGTCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCA
455 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * *
10088502 GACCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGTGGGACCCGACCGATCCCCGGCTTGT
520 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
10088567 GCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACACTCGTTCCGTGGGTTGACTTAGGCATACA
585 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* ** * *
10088632 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGATCGAGGAT
650 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * *
10088697 TGCGGTAGCACATGCTGTGCTTGGG-ATGTGCTGTTGCCGTATTTTTCTTCGACGGGGCACCATC
715 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * * * *
10088761 GTCGGAGCATCGCCAGAGAACTTGACCGACGGTATTAGGGTTCCGGCGATCAGGGGAGCCAGGGG
780 GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* * *
10088826 ATGTGCGCAGATGATGTGCGATGGGTGCTGCTGCTTGGCCCTTATATTGGCCCCC
845 GTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * * *
10088881 TATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAAAGCATTTGAGATTTTACTGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
10088946 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10089011 ACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAAAATAATACAAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * * * *
10089076 GTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAAAAAAATCCCTAACCGCAAAGAGTTTCAAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
* *
10089141 TCGTGAAAAATAGAAAACTAGTCATCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
* * * *
10089206 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCATAAATATGATGATTTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
10089271 CTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCG--
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * *
10089334 C--CCGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTG
456 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * *
10089397 ACCGAGGGTTACAGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCG
521 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * * *
10089462 CATCCCTCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTAGTGGGTTAACTTAGGCATACGG
586 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
10089527 AGTTCATTCCCAGTCTAAG-AT--TG-G---A----C---C---GA----ACC--A---AGGGTT
651 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * *
10089566 GCGGTAGCACATGATGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
716 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * *
10089631 CCGGAGCATTG-CTGGAGAACCTGACCGGCGGCATTAGTGTTCC-AGCGATCGGGGGGGCCGGGG
781 TCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCC--GG
* * *
10089694 GGGGTGTGCGCACATGATCTGTGATGGGTG-TCGGTGCTTGGCCCTTATATTGGCCCTC
842 GGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTGCTTGGCCCTTATATTGGCCCCC
* *
10089752 TGTCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
10089817 TGCCAGTAGCAATTAAAGTGTCTGAAATGGGAACACTTTTTCCAAGTGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10089882 ACTTCGAGTTTTTAGCTGAATTATTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * *
10089946 GTTTGCAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAATA-TTTAAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAA-AGTTTTAAAA
*
10090010 ATCGTGAAAATTAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
*
10090075 GTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * * *
10090140 CCTACCACCCTATCGATCGACGGCTTGCGCATCCAGCCTCTCTGGCCGACATATTGGCCGCCCAC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
10090205 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATCGGACC-
455 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * ** * ** * * *
10090269 GAATCGAGGGTTGCAGTAATAGGATCGGCAGCCCATAGAGGGGGACCCGGCCGATCCCCTGCTTA
520 G-ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* *
10090334 CGCATCCCGGCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
10090399 GGAGTTTATTCCTAGTCTAAGCATACGTAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
** * * *
10090464 TTGCGGCAGCACATGCTACGCTCAGGCATGTGATGGTGCCGCATTTTTCTTCGGCGGGGCACCAT
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* ** * *
10090529 CGTCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGTGGTTCCGACGATCGGGGGGGCCGGGG
779 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * *
10090594 GGTGTGCGCACATGATGTACGATGGGTGCTGGTGCTTGGCCCTCATATTGGTCCCT
844 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * *
10090650 TATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGCTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
10090715 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10090780 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACT-CAAGGATCACGTCTACCA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCA
* * * * *
10090844 AGTTTGGGGCCAAAACTCCTTCCGAAACAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAA
195 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAA
* * *
10090909 ATCATGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACACGAAGGCTTAAGGGAGCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
* * ** *
10090974 GTACGAAATTACAAGAAATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * ** * * * *
10091039 CCTACCAACCTATCGACCCACGGCCTGCGCATCCCACCTTTTTGGCCGGCGTACTAG-CCGCTCG
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCG
* * * *
10091103 CCCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATC
454 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
10091168 AGACCGAGGGTTGTGGTAGCAGGATCAGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTG
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * * * *
10091233 CACATCCCACACTTCTGGCCGGTTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * **
10091298 AGAGTTCATTCCCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACTTAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * *
10091363 TTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACTGGGGCATCA
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCA
* * * * * *
10091427 TCGTTGGAGCATC-ACGGGAGAGCCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGTCGG
778 TCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
10091491 GGGGTTGTGCGAACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
842 GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * *
10091550 TATCCCTCATCAAACCAT-GAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTCAGAGGTTTG
1 TATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* ** *
10091614 CTGCCAGTAGCCATTAAAGTGTTTGAAATTAGGACACTTTTTTCAAATGGTCACAAAATCTTGAA
65 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
10091679 CACTTCGAGTTTTTAGCTGAATTTTTTTTTTTGCATGCCAAAAAAAATAAAAGGATCATGTCTAC
130 CACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* *
10091744 CAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-TCTGAACCGCAAAAAGTTTCA
193 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTA
** * * * *
10091808 AAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACAAGAAGGCCTAAAGGACC
257 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACC
* * *
10091873 GTTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCAGGAAGAAATATGAAGATGTGCCTAAA
322 ATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
10091938 CCCACCTACCGA-CCTATCGATCCACGGCTTGCGCATCCCGTCTATCTGGCCGGTGTAGTGCCCG
386 CCCACCTACC-ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * * *
10092002 CCCGCCCGCCCGTTCAG-TTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCTCAATCTAAGATT
450 CCCGCCCGTCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** * * *
10092066 GGACCGGACCGAGGGTTACGGTAGCAGGATCAGCAACACATAGAGGGGGACTCGACTGATCCTCG
514 GGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * ** * * *
10092131 ACTTGTGCATCCTGCCCCTCTAACCGGCTGAGCGGCCGCACGCTCGTTTCATGGGTTGACCTAGG
579 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
10092196 CATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
644 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * *
10092261 GAGGGTTGTGGCAGCACATGCTTGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
709 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * **
10092326 AACATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGACATTGAGGTTCTGACGATCGATGGGGC
774 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * * * **
10092391 CGGCGGGGTGTGCGTATATGATGTGCAATGGGTGTTGGTGCTTGGCCCTTATATTGGCCCGT
839 CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* * * *
10092453 TATCCCTCACCAAACCTCAAGAACTCACATCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
10092518 TGCCAGTAGCCATTAAAGTGTCT-AGAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTA
66 TGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
10092582 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCA
130 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * * *
10092647 AGTCTGGGGCCAAAAAATCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAACTTTTGAA
195 AGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAA
* * * *
10092712 AATCATGAAAAATAGAAAACGATTTGTCTTGCCATGAAACTTCACACAAAGGCTTAAGGGACCAT
259 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCAT
* * * *
10092777 TGTATGAATTCACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATTTGCCAAAACCC
324 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
10092842 ACCTACCATCATATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGACGTCGTGCCCGCCCG
389 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
10092907 CCCGGT-CGCTCGTTTCGTCGTTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGAC
454 CCC-GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
10092971 CAGACCGAGGTTTGTGGCAGCAGGATTGGCAGCAGGATTGGCAGCATGCAGAAGGGGACCC-AGC
518 CAGACCGAGG---GT---TGC-GG--T---AGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-C
* * * * *
10093035 CGATCCCTGGCTTGCGCATCCCACCCCTCCGGCCGGCTGAGCGTCCGCACGCTCGTTTCATGGGT
570 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
10093100 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
635 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
10093165 GATCAGACCGAGGGTTGGGGAAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCCGTATTTTTCTT
700 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
10093230 C-ACTAGGGCACCA---T-----CA-C--CGGAGAACCTGACCGGCAGCATTGGGGTTCCAACGA
765 CGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * *
10093283 TC-AGGGGGTCGGGGGGTGTGCGCACATGATGTTCAATGGGTGCTGGTGCTTGGCCCTTATATTG
829 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTG
* *
10093347 GTCCCT
894 GCCCCC
* *
10093353 TATCCCCCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
10093418 TGCCTGTAGCCATTAAAGTGTCTGAAATGAGGACACGTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10093483 ACTTCGA-TTGTTTAGCTGAATTTTTTTGTGCATGCCAAAACAAATACAAGAATCACGTCTACCA
131 ACTTCGAGTT-TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * * * *
10093547 AGTTTGGGGTCAAAACTGCTTCTGAAAAAATTTAAAAAAATCCCGAACCGCACAAAGTTTCAAAA
195 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAA
*
10093612 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
*
10093677 GTAAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
*
10093742 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
** * * * * * *
10093807 CCG-CCTGCTCGTTTCGTTAGTTGACTTAGGCATACAGACTTCATTCCTAGTCTAAGACCAGACC
455 CCGTCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
10093871 AGACTGAGGGTTGTGGTAGCAGGGTCGGTAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTA
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
10093936 CGCATCCCGCCCCTCTAGTCGGCTGAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
10094001 GGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * ** **
10094066 TTGTGGCAACACATGTTGGGCTCAGGCATGTG-TCGGTGCCGCATTTTTCTTCACCGACGCACCA
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * ** * *
10094130 TCG-CTGGAGCATTGTCGGAGAACCTGATCGACGACATTGGGGTTCCGGTGATCGGAGAGGCCGA
778 TCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-
* *
10094194 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
841 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
* *
10094253 TATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
10094318 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
10094383 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * ** * * *
10094448 G-TTGGGGCCGAAACGCCTTCCAAAAAAATTAAAAAAAATC-CAAAACCGCAAAAGGTTTCAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTAAAA
* * **
10094511 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATT
260 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATT
* ** *
10094576 GTGTGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
** * * * **
10094641 TGTACCACCATATCGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCTTGCCCGC
390 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
** * * **
10094706 CC-TCCCGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATTGGATT
455 CCGT-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
10094770 GGATCGAGGGTTGCAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGACTGATCCCCGGGTTG
519 AGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * ** * * *
10094835 AGCATCCCGCTCCTCTGGTTGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
584 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
** * * * *
10094900 ATAATTCATTCACAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGG
649 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * * * **
10094965 TTGCGGCCGTACATGCTTGGCTCGAGCATGTACTGGTGTCAAATTTTTCTTCGTCGGGGCACCA
714 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
10095029 ATCACCCTAT
Statistics
Matches: 16959, Mismatches: 2182, Indels: 744
0.85 0.11 0.04
Matches are distributed among these distances:
859 1 0.00
860 608 0.04
861 7 0.00
862 10 0.00
863 2 0.00
864 2 0.00
865 4 0.00
866 8 0.00
867 4 0.00
868 41 0.00
869 86 0.01
870 271 0.02
871 203 0.01
872 76 0.00
873 284 0.02
874 493 0.03
875 192 0.01
876 9 0.00
877 8 0.00
878 7 0.00
879 1 0.00
880 8 0.00
881 23 0.00
882 201 0.01
883 347 0.02
884 19 0.00
885 7 0.00
886 509 0.03
887 653 0.04
888 589 0.03
889 597 0.04
890 508 0.03
891 481 0.03
892 86 0.01
893 468 0.03
894 820 0.05
895 362 0.02
896 157 0.01
897 1300 0.08
898 1639 0.10
899 2060 0.12
900 1110 0.07
901 575 0.03
902 394 0.02
903 644 0.04
904 55 0.00
905 48 0.00
906 53 0.00
907 72 0.00
908 37 0.00
909 38 0.00
910 46 0.00
911 222 0.01
912 132 0.01
913 231 0.01
914 56 0.00
915 20 0.00
916 17 0.00
917 3 0.00
918 32 0.00
919 12 0.00
920 11 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCC
Found at i:10084225 original size:26 final size:26
Alignment explanation
Indices: 10084196--10084248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10084186 GTTGACTTAG
10084196 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
10084222 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
10084248 G
1 G
10084249 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:10085990 original size:26 final size:26
Alignment explanation
Indices: 10085954--10086006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10085944 GTTCACTTAG
*
10085954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10085980 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10086006 G
1 G
10086007 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10086875 original size:26 final size:26
Alignment explanation
Indices: 10086846--10086896 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10086836 TGACTTAGGC
10086846 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
10086872 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
10086897 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:10087757 original size:26 final size:26
Alignment explanation
Indices: 10087727--10087779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10087717 GTTGACTTAG
10087727 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
10087753 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10087779 G
1 G
10087780 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10088654 original size:26 final size:26
Alignment explanation
Indices: 10088625--10088677 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10088615 GTTGACTTAG
10088625 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
10088651 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10088677 G
1 G
10088678 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10090422 original size:26 final size:26
Alignment explanation
Indices: 10090393--10090445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10090383 GTTGACTTAG
*
10090393 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
10090419 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10090445 G
1 G
10090446 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:10092224 original size:26 final size:26
Alignment explanation
Indices: 10092195--10092247 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10092185 GTTGACCTAG
*
10092195 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10092221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10092247 G
1 G
10092248 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10093002 original size:12 final size:12
Alignment explanation
Indices: 10092985--10093016 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
10092975 CCGAGGTTTG
10092985 TGGCAGCAGGAT
1 TGGCAGCAGGAT
10092997 TGGCAGCAGGAT
1 TGGCAGCAGGAT
10093009 TGGCAGCA
1 TGGCAGCA
10093017 TGCAGAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.19, G:0.41, T:0.16
Consensus pattern (12 bp):
TGGCAGCAGGAT
Found at i:10093138 original size:26 final size:26
Alignment explanation
Indices: 10093108--10093160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10093098 GTTGACTTAG
*
10093108 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10093134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10093160 G
1 G
10093161 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10094034 original size:26 final size:26
Alignment explanation
Indices: 10093998--10094047 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
10093988 GACTTAGGCA
10093998 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
10094024 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
10094048 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:10096277 original size:114 final size:114
Alignment explanation
Indices: 10096073--10096302 Score: 397
Period size: 114 Copynumber: 2.0 Consensus size: 114
10096063 GGCAGCAAGA
* * *
10096073 TCGGTAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTACACATCCCATCCTTCTGGTCGACA
1 TCGGTAGCACACAGAGGGGGACCTGGCCGATCCCCGACTTACACATCCCATCCCTCTGGTCGACA
* *
10096138 AGCTCCCACATGCTTGTTTCGTGGGTTGACATAGGCATACGGAGTTCAT
66 AGCACCCACATGCTTGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
* *
10096187 TCGGTAGCACACAGAGGGGGACCTGGCCGATCCCCGACTTACACATCCCGTCCCTCTGGTCGACG
1 TCGGTAGCACACAGAGGGGGACCTGGCCGATCCCCGACTTACACATCCCATCCCTCTGGTCGACA
10096252 AGCACCCACATGCTTGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
66 AGCACCCACATGCTTGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
10096301 TC
1 TC
10096303 CCAGTCTAAG
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 109 1.00
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (114 bp):
TCGGTAGCACACAGAGGGGGACCTGGCCGATCCCCGACTTACACATCCCATCCCTCTGGTCGACA
AGCACCCACATGCTTGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
Found at i:10096318 original size:26 final size:26
Alignment explanation
Indices: 10096288--10096338 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
10096278 TGACATAGGC
10096288 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
10096314 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
10096339 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:10097207 original size:26 final size:26
Alignment explanation
Indices: 10097171--10097221 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10097161 TTGACTTAGG
*
10097171 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
10097197 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
10097222 GATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:10097525 original size:26 final size:26
Alignment explanation
Indices: 10097496--10097548 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10097486 GTTGACTTAG
**
10097496 GCATACAGAGTTTGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10097522 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10097548 G
1 G
10097549 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10098420 original size:26 final size:26
Alignment explanation
Indices: 10098380--10098433 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
10098370 TGGGTTAACT
* *
10098380 TAGGCATACGGAGTTAATTTCCAGTC
1 TAGGCATACGAAGTTAATTCCCAGTC
*
10098406 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTAATTCCCAGTC
10098432 TA
1 TA
10098434 AGATCAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACGAAGTTAATTCCCAGTC
Found at i:10099084 original size:12 final size:12
Alignment explanation
Indices: 10099067--10099091 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10099057 CCGGCGTAGT
10099067 GCCCGCCTGCTC
1 GCCCGCCTGCTC
10099079 GCCCGCCTGCTC
1 GCCCGCCTGCTC
10099091 G
1 G
10099092 TTTCATCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.56, G:0.28, T:0.16
Consensus pattern (12 bp):
GCCCGCCTGCTC
Found at i:10099299 original size:26 final size:26
Alignment explanation
Indices: 10099269--10099327 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
10099259 GCTGTCTTAG
10099269 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10099295 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10099321 -CAT-CGGA
1 GCATACGGA
10099328 TCGGACTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10101052 original size:26 final size:26
Alignment explanation
Indices: 10101016--10101068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10101006 GTTGACTTAG
*
10101016 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
10101042 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
10101068 G
1 G
10101069 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:10103663 original size:26 final size:26
Alignment explanation
Indices: 10103634--10103686 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10103624 GTTGACTTAG
10103634 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10103660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10103686 G
1 G
10103687 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10105244 original size:26 final size:26
Alignment explanation
Indices: 10105208--10105258 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
10105198 TCACTTAGAA
10105208 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
10105234 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
10105259 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:10105581 original size:712 final size:712
Alignment explanation
Indices: 10104213--10105642 Score: 2222
Period size: 712 Copynumber: 2.0 Consensus size: 712
10104203 ATGGCATTGG
*
10104213 TACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATC
1 TACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCTGCGCATC
* * * *
10104278 CCGTCTCTCTGATCGGCGTAGTGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGG
66 CCGTCTCTCAGATCGACGTAGTGCCCGCCCGCCCGTTCGTTTCATCAGTTGACTTAGGCATACGG
* * * *
10104343 AGTTCATTCCGAGTGTAAGATCAGACCGGATCGAGGGTTACGACAGTAGGATTGGCAGCACGTAG
131 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGTAGGATTGGCAGCACGCAG
*
10104408 AGGGGGATCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGC
196 AGGGGGATCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGC
* * ** *
10104473 TCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGAATATGGAGTTCATTCC
261 TCGTTTCGTGGGTTCACTTAGAAATACAGAGTTCATTCCCAATCTAAGAATACGGAGTTCATTCC
* * * *
10104538 CAGTCTAAGTTCGGACCGGACCGAGGGTTCCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
326 CAGTCTAAGATCAGACCAGACCGAGGGTTCCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGAG
* * * * ** * *
10104603 CTATATTTTTCTTCACTGTGGTGCCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
391 CCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGACGGCATTG
* * * *
10104668 GGGTTTCGACGATCGGGGGGGCTAGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTAGTTG
456 GGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
10104733 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
521 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
10104798 GAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAAT
586 AAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAAT
* * *
10104863 GGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAA
651 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCAAGCCAACAAAAA
*
10104925 TACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCTGCGCATC
1 TACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCTGCGCATC
* * * *
10104990 CCTTCTCTCAGGTTGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTCAGTTGACTTAGGCATACGG
66 CCGTCTCTCAGATCGACGTAGTGCCCGCCCGCCCGTTCGTTTCATCAGTTGACTTAGGCATACGG
** *
10105055 AGTTCATTCCCAGTCTAAGATTGGACCAGA-CTGAGGGTTGACG-TAGTAGGATTGGCAGCACGC
131 AGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTT-ACGACAGTAGGATTGGCAGCACGC
* * *
10105118 AGAGGGGGA-CCTGGTCGTTCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCACA
194 AGAGGGGGATCC-GGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACA
* * *
10105182 CGCTCGTTTCGTGGGTTCACTTAGAAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
258 CGCTCGTTTCGTGGGTTCACTTAGAAATACAGAGTTCATTCCCAATCTAAGAATACGGAGTTCAT
* * *
10105247 TCCCAGTCTAAGATCAGACCAGACCTAGGGTTAC-GACAGCACATGTTGGGCTCGGGCATGTGCT
323 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCAG-CAGCACATGCTGGGCTCGGGCATGTGCT
* *
10105311 GGAGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGC
387 GGAGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGACGGC
*
10105376 ATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
452 ATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
* *
10105441 CTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
517 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
** * * *
10105506 ATTTAAGATTTTACAGGTTTGCTGCCAGTAGGCGTTAAAGTGTTTGAAATGGGGACACTTTTTTC
582 ATTTAAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTATCTGAAATGGGGACACTTTTTTC
*
10105571 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAAAA
647 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCAAGCCAACAAAA
10105636 A
712 A
10105637 TA-AAAG
1 TACAAAG
10105643 GATGATGTCT
Statistics
Matches: 650, Mismatches: 64, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
711 7 0.01
712 640 0.98
713 3 0.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (712 bp):
TACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCTGCGCATC
CCGTCTCTCAGATCGACGTAGTGCCCGCCCGCCCGTTCGTTTCATCAGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGTAGGATTGGCAGCACGCAG
AGGGGGATCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGC
TCGTTTCGTGGGTTCACTTAGAAATACAGAGTTCATTCCCAATCTAAGAATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTCCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGAG
CCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGACGGCATTG
GGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
AAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCAAGCCAACAAAAA
Found at i:10106138 original size:26 final size:26
Alignment explanation
Indices: 10106108--10106160 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10106098 GTTGACTTAG
*
10106108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
10106134 GCATATGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10106160 G
1 G
10106161 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10107042 original size:26 final size:26
Alignment explanation
Indices: 10107006--10107058 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10106996 GTTGACTTAG
*
10107006 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
10107032 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10107058 G
1 G
10107059 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10108642 original size:26 final size:26
Alignment explanation
Indices: 10108612--10108664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10108602 GTTGACTTAG
* *
10108612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
*
10108638 GCATAAGGAGTTGATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
10108664 G
1 G
10108665 ATCGAATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:10110074 original size:904 final size:899
Alignment explanation
Indices: 10107782--10114379 Score: 7292
Period size: 904 Copynumber: 7.4 Consensus size: 899
10107772 AGAGCGGACT
* * *
10107782 GAGGGTTGTGGCAGCACATGCTGGGCTCACGCATGTGCTGGAGCCGCATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * *
10107847 ACCATTGTCGGAGCGTCGCCGGAGAACCTGACCGACAGCATTGGGGTTCTGACGATCGGAGGGGC
66 ACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTGGGTTCCGGCGATCGGGGGGGC
**
10107912 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCAACCTA
131 CGA--GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
10107977 TCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTCGAGATTTTACAAGTTTGTTG
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
10108041 CCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
10108106 TTGGAGTTTTT-GCCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAG
324 TTCGAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * *
10108170 TTTGGGGCCAAAACTCCTTTTGAAAGAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCCAAAA
388 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCAT-AAAAAGTTTCAAAAA
10108234 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
452 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
10108299 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
517 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
10108364 CTACCACCGTATCGATTCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCATAGTGCCCGCCCG--
582 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* ** * * * **
10108427 ---CT---CGCTCATTTCGTCGGTTGGCTTACTCTTACGAAGTTCATTCCCAGCCTAA-ATTTGG
647 CACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAG
** * ** * * *
10108485 ACC-AGACCAAGGGTTGCGGCAGCAAGATTGGTAGCACGTAGAAGGGGACCCGATCGATCCCCGG
711 ACCGA-ACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * *
10108549 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCTCCCGTATGCTCGTTTCATGGGTTGACTTAGGC
775 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * ***
10108614 ATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTGATTCCCAATCTAAGATCGAATTGAACC
839 ATACGGAGTTCATTCCCAGTCTAAGCATCA-GAGTT-ATTCCCAATCTAAGATGGACCAG-ACC
* * * * * * *
10108678 GAGGGTTGCAGTAGCACATGCTGGGCTCACGCATGTGCTGGAGCCGCAATTTTCTTCGCCAGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* ** * * * * *
10108743 ACCATTGCCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCGGGTGATCGAGGGGGC
66 ACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTGGGTTCCGGCGATCGGGGGGGC
* *
10108808 CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
131 CGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
10108873 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
10108938 AGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* ** *
10109003 CGAGTTTTTAGCT-AATTTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTAATACATT
326 CGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGT
* * * * *
10109067 TTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATTTGGAACCGTAAAAAGTTTTAAAAATC
389 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATC
* * ** * * * *
10109132 ATGAAAAATAGAAAACAAGTTATCTTGCCATTAAACTTCACGTCAAGGCTTAAAGGACGATTGTA
454 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
10109197 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * **
10109262 ACCACCCTATCGATTCACGGCTTGCGCATCCCACCTCTCTGGTCGACGTAGTGCCCGCTCGCCTG
584 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCA
*
10109327 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCAGACC
649 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * * * *
10109392 GAACTGAGGGTT-CTGATAGCAAAATCAACAGCACGTAGAGGGGGACCCGACCCATCCTCGACTT
714 GAACTGAGGGTTGC-GGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
**** * * * *
10109456 AAAAATCCCGCCCCTCTGGCCGGCTGAGCGCACGCACGCTCTTTTGGTGAGTTAACTTAGGCATA
778 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
10109521 CGGAGTTCATTCCCAGTCTAAGCTTGCAGAGTTCATTCCCAATCTAAGATTGGACCAGATC
842 CGGAGTTCATTCCCAGTCTAAGCAT-CAGAGTT-ATTCCCAATCTAAGA-TGGACCAGACC
* *
10109582 GAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * *
10109647 ACCATTGTCGGAGTATCACCGAAGAACCTGACCGGCGGCATTTGGGTTCCGGCGATCGGGGGGGG
66 ACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTGGGTTCCGGCGATC-GGGGGGG
*
10109712 CCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGT
130 CCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
10109777 CCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
10109842 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * **
10109907 TCGAGTTTTTAGCTGAATATTTTTATGCATACCAACAAAACTACAAGGATCACATCTAATAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * **
10109972 TGGGGCTAAAACTTCTACCGAAAAAATTTTAAAAAATCCCGAACCATAAAGAGTTTTGAAAATCG
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCG
* * * * *
10110037 TAAAAAATAGAAAACGAGTCATTTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGCAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
10110102 GAATTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGGAGATGTGCCTAAACCCACCCA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
10110167 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGACCGGCGTCGTGCCTGCTCGCCCAC
585 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCAC
* * * ** * * *
10110232 CCGCCCGTTCATTTTATTGGTTGGCTTAGGGATACGGAGTTCATTCCCAATCTAAGATCAGACC-
650 CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * ** * * * * * ** *
10110296 AGATTGAGGGTTGTGACAATAGGATCGACAGCATGTAGAAGGGGATCCGGTCGATCCTCGGCTTG
715 A-ACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * *
10110361 CGCATCCCGCCCCTCTGGCCGGTTGAGC-CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
779 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * **
10110425 TAGTTCTTTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGTTC
844 GAGTTCATTCCCAGTCTAAGCAT-CAGAGTT-ATTCCCAATCTAAGA-TGGACCAGACC
* * * * ** ** *
10110484 GAGGGTTGCGACAGCACATGCTGGGCTCGGGAATGTGCTGCTGTAGCATTTTTCTTCACCGGGGT
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * *
10110549 ACCATCGTCGGAGCATCGCCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCAGCG
66 ACCAT--T----G--T---CGGAGCATCACCGGAGAACCTGACCGACGGCATTTGGGTTCCGGCG
* * *
10110614 ATCGGGTGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
120 ATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
10110679 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTGACA
185 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
10110744 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
250 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
10110809 CTTGTACACTTTGAGTTTTTTA-CTGAATTTTTTTTATGCATGCCAAAAAAAATACAAAGACCAT
315 CTTGTACACTTCGAG-TTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
10110873 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
378 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAG
10110938 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
443 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
10111003 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
508 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
10111068 TAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCGCCTCTCTGGCCGACATAGTGC
573 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC
* * * * *
10111133 CCACTCGCCCGCCTGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
638 CCGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * **
10111198 AAGATCAAACCAGATC-GAGGG-TGCGGTAGCAAGATCGGCAATACGCAGAGGGGGACCCGACCG
703 AAGATCAGACC-GAACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCG
* ** * * *
10111261 ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAACTGAGCCCCCGCACGCTTGTTTTGTGGGTTG
767 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-CGCCGCACGCTCGTTTCGTGGGTTG
10111326 ACTTAGGCATACGGAGTTCATTCCCAG--T---C-T-A-AG---------ATC------GGACCA
831 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCAGAGTTATTCCCAATCTAAGATGGACCA
10111368 GACC
896 GACC
* * * **
10111372 GAGGGTTACGGTAGCACATGCTGGGCTC-GAGCATGTGCTTGTGCCATATTTTTCTTCGTC--GG
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
10111434 ------TG-C--ATCATCACCGGAGAACCTGACCGGCGACA-TTGGGATTCCGTCGATCGGGGGG
65 CACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTGGG-TTCCGGCGATCGGGGGG
*
10111489 GCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
129 GCC--GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
10111554 TATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
192 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
** * *
10111619 TGCCAGTAGTTATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10111684 ACTTCGAGTTTTTAGCTG-ACTTTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* **
10111748 TTTTGGGGCCAAAACTCCTTTAGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAA
387 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAA
* *
10111813 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTG
452 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
10111878 TATGAATTTACAAGCCATAAAATTGGCATTGGTACACAGAAATATAAATATGTGCCTAAACCCAC
517 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
10111943 CTACCACCCTATCGATCAACGGCTTGCGCATCCCGCCTCTCTAGCCGGTGTAGTGCCCGCCCGCC
582 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
10112008 CACCCGCCCACCAGTCTGCTTGTTTCATCGGTTGGCTTAGGCATACGGTGTTTATTTCCAATCTA
647 CACCTG--C-CC-G-CT-C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** *
10112073 AGACCAGACCGGAC-GAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGAGCGAT
704 AGATCAGACCGAACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGAT
* * * *
10112137 CCCCGGGTTGCGCATCCCGCCCCTCTGGTCGACTGAGC-CCGCACGCTCGTTTCATGGGTTGACT
769 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACT
10112201 T-GTGCATACGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTTAGCATACGGA
834 TAG-GCATACGGAGTTCATTCCCAG--T---C-TA---AG--------CA----T--C--A--GA
* *
10112265 GTTCATTCCCAGTCTAAGATTGGACCAGACT
871 GTT-ATTCCCAATCTAAGA-TGGACCAGACC
* * * * ** * *
10112296 GAGGTTTACGGCAGCACATGCTAGGCTCGGGCACATACTGGTGCCGCATTTTTCTTCGTCGGTG-
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
10112360 A--ACT-T----G-AT---C-G-G---C-G---G-C-G---TTGGTGTTCCGACGATC-GGGGGG
66 ACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTGG-GTTCCGGCGATCGGGGGGG
* *
10112399 CC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGTCCCCTA
130 CCGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
10112463 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGTGATTTTACAGGTTTGCTG
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* ** * *
10112528 CTAGTAGTTATTAAAGTGTCTAAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
10112593 TTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGT
324 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * *
10112658 TTGGGGCCAAAACTAGTTCCGAAAAAATTTTAAGAAATCTCGAACCGTAAAAAGTTTCAAAAATC
389 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATC
* * *
10112723 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
454 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
10112788 TGAATTTACAAGCCATAAAAATGGCATTGGGATGCACAAATATGAAGATGTGCCTAAACCCACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * ** * * * *
10112853 ACCACCCTATCGATCCTCGGCTTACGCATCCCATCTCTCTAGCCGACATAGTGCCCGCCCACCCA
584 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCA
* * **
10112918 --T--TCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAGATCAGACC
649 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
10112979 GGA-TAGAGGGTTGCGACAGTAGGATTGGTA-AG-ACGCAGAGGGGGACCCAACCGATCCTCGAC
714 GAACT-GAGGGTTGCGGCAGCAAGA-TCG-ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * * ** *
10113041 TTACGCATCCTGCCCCTCTGACCGGTTGATCAGCCACACGCTCGTTTCGTTTGTTGACATAGGCA
776 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
10113106 TATGGAGTTAATTCCTAGTCTAAG-ATC--AG--A----C---C-------G----GACC
840 TACGGAGTTCATTCCCAGTCTAAGCATCAGAGTTATTCCCAATCTAAGATGGACCAGACC
* * * * *
10113143 GAGGGTTGCGGTAGCACATGTTGGGGTCGGGCATGTGCTGGTGTCGCA-TTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *** * * * *
10113207 ACTATCACCCGAGCATCATCGAAGAACCTGACCGATGGCA-TTGTGGTT-CGAGCGATCGAGGGG
66 ACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTG-GGTTCCG-GCGATCG-GGGG
* * * * *
10113270 GTCGGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
128 GGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
10113335 ATCCCTCATCAAACC-CGAGAACTCACAACCCCTTAAAAAACATTTGAGATTTTACAGGTTTGCT
193 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
10113399 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAAT-TGTGTAC
258 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT-TGTAC
* * * * * *
10113463 ACTTCGAGTTTTTATCTAAATTTTTTTGTGCCTGACAACAAAAATAGAAGGATCACATCTACCAA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * **
10113528 GTTTGGGGCCAAAACTCCTTCC-AAAAAAGTTTAAAAAATC-CTAAATCGCAAAAAGTTTCAAAA
387 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCATAAAAAGTTTCAAAA
* ** * *
10113591 ATTGAAAAAAATAGAGAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATT
451 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
10113656 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCA
516 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * *
10113721 CCTACCACCCTATCGATACACGGCTTGCGCATCACGTCTCTCTAGTCGGTGTAGTGCCCGCCCGC
581 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * **
10113786 CCACCCGCCCG-TACGTTTCGTCAGTTGGCTTAGGTATACGGAGTTCATTCTCAGTCTAAGATTG
646 CCACCTGCCCGCT-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
10113850 GACCGGA-TGGAGGGTTGCGGCAGCAGGATCCACAGCATGCAGAGGGGGACCCGACCGATCCCCG
710 GACCGAACT-GAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCG
* ** ** * * * * *
10113914 ACTTTTGTGTCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGTGTTCACTTAGG
774 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGG
10113979 CATAC-GATGTTCATTCCCAGT-T-----T-A-AG---------ATC------GGACCAGACC
838 CATACGGA-GTTCATTCCCAGTCTAAGCATCAGAGTTATTCCCAATCTAAGATGGACCAGACC
* * * * *
10114018 GAGGGTTGTGGCAGCACATGCTGGGCTC-GAGCATGTGCTAGTGTCGTATTTTTCTTCGTCGGTG
1 GAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * *** * **
10114082 CACCATCGCCGAAGCATCGCTGGAGAACCTGACCGACGACATTAACGTTTCGGCGATTAGGGGGG
65 CACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTGGGTTCCGGCGATCGGGGGGG
*
10114147 CC-AGGTAGGGTGTGCGCAC---A--T--GATGGGTGCTAGTACTTGG-CCTTATATTGGCCCCC
130 CCGA-G--GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* ** * *
10114203 TAT-CCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTAAATATTTTATAGGTTTGC
192 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
10114267 TTCCAGTAGCCATTAAATTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
10114332 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
10114380 TTAGGGTTCA
Statistics
Matches: 4886, Mismatches: 634, Indels: 391
0.83 0.11 0.07
Matches are distributed among these distances:
846 14 0.00
847 42 0.01
849 1 0.00
851 1 0.00
854 1 0.00
855 2 0.00
858 1 0.00
859 1 0.00
860 1 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 4 0.00
866 326 0.07
867 8 0.00
868 205 0.04
869 165 0.03
870 26 0.01
871 226 0.05
872 226 0.05
873 85 0.02
874 128 0.03
875 213 0.04
876 53 0.01
877 15 0.00
878 1 0.00
880 1 0.00
881 1 0.00
886 2 0.00
887 1 0.00
888 54 0.01
890 2 0.00
893 2 0.00
894 87 0.02
895 151 0.03
896 395 0.08
897 67 0.01
898 5 0.00
899 43 0.01
900 2 0.00
901 3 0.00
902 141 0.03
903 4 0.00
904 648 0.13
905 259 0.05
906 2 0.00
907 198 0.04
908 282 0.06
909 9 0.00
910 15 0.00
911 1 0.00
912 265 0.05
913 383 0.08
914 44 0.01
915 1 0.00
917 3 0.00
918 1 0.00
921 1 0.00
922 1 0.00
923 1 0.00
924 58 0.01
925 1 0.00
926 3 0.00
929 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
ACCATTGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTTGGGTTCCGGCGATCGGGGGGGC
CGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACC
TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
ACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATCAGAGTTATTCCCAATCTAAGATGGACCAGACC
Done.