Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 59 of 121
Found at i:10110455 original size:26 final size:26
Alignment explanation
Indices: 10110418--10110470 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10110408 GTTGACTTAG
* * *
10110418 GCATACGTAGTTCTTTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10110444 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10110470 G
1 G
10110471 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10112234 original size:26 final size:26
Alignment explanation
Indices: 10112204--10112279 Score: 143
Period size: 26 Copynumber: 2.9 Consensus size: 26
10112194 GTTGACTTGT
10112204 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTCA
*
10112230 GCATACGGAGTTCATTCCCAGTCTTA
1 GCATACGGAGTTCATTCCCAGTCTCA
10112256 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
10112280 AAGATTGGAC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:10116482 original size:711 final size:715
Alignment explanation
Indices: 10115093--10116592 Score: 2212
Period size: 711 Copynumber: 2.1 Consensus size: 715
10115083 TGCACGCTCG
* * * * * *
10115093 TTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGAACCGAGGGTT
* * * *
10115158 CTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
66 CTAGCAGCACATCCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACCATCG
* * *
10115223 TCGAAGCATCATCGGAGAACCTGACCGGTGGCGTTGGGGTTCCGACGATCGGGGGGTCGGGGGGT
131 TCGAAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
*
10115288 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
196 GTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * * *
10115353 AACCTTGAGAACCCACACCCCCTTAAATAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCA
261 AACCTCAAGAACCCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCCGCCAATACCCA
* *
10115418 TTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGCTTT
326 TTAAAGTGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGCTTT
* * * * * *
10115483 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGAGAA
391 TAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAA
10115548 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
456 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* *
10115613 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACA
521 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATATACA
* * *
10115678 AGCCATAAAAATGGAATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAG
586 AGCCATAAAAATGGAATTGGCAAGCAAAAATATGAAGAAGTGCCTAAACCCACCTACAACCCTAG
* * **
10115743 CTATCCACGACTCGCACATCCCGTCTCTCTGGCCGGCGT-G-G-TG-CC-T-GCCCGCCCGTTCA
651 CAATCCACGACTCGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCTTCGCCCGCCCACTCA
*
10115802 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATCGAATCAG-ACCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA-CAGAACCGAGGGT
*
10115866 TGC-AGCAGCACATCCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCACT-GGGGCACCA
65 T-CTAGCAGCACATCCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTC-CTCGGGGCACCA
* * * * *
10115929 TCGTTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGG
128 TCGTCGAAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG
10115994 GGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
191 GGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
10116059 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGT
256 CATCAAACCTCAAGAACCCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCCGCCAAT
* **
10116124 ACCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
321 ACCCATTAAAGTGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
* *
10116189 GTTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTTGG
386 GCTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
* * *
10116254 GCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAA
451 GACAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAA
*
10116319 AAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAAT
516 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAAT
* * *
10116384 TTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGAAGTGCCTAAACCCACCTACAAC
581 ATACAAGCCATAAAAATGGAATTGGCAAGCAAAAATATGAAGAAGTGCCTAAACCCACCTACAAC
* * * * * *
10116449 CCTATCAATCCAC-AGCTTGCGCATCCTGTCTCTCTGGCTGGTGTAGTGCCCGCCCTTTCGCCCG
646 CCTAGCAATCCACGA-CTCGCACATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCC-TTCGCCCG
*
10116513 CCCACTCG
708 CCCACTCA
* * * *
10116521 TTTCGTCAGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCA-AACTGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGAACCGAGGGT
*
10116585 TCTGGCAG
65 TCTAGCAG
10116593 TAGGATCGGT
Statistics
Matches: 703, Mismatches: 71, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
709 154 0.22
710 12 0.02
711 458 0.65
712 1 0.00
713 1 0.00
715 1 0.00
716 2 0.00
718 2 0.00
719 70 0.10
720 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGAACCGAGGGTT
CTAGCAGCACATCCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACCATCG
TCGAAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
GTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCAAGAACCCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCCGCCAATACCCA
TTAAAGTGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGCTTT
TAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGACAA
AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATATACA
AGCCATAAAAATGGAATTGGCAAGCAAAAATATGAAGAAGTGCCTAAACCCACCTACAACCCTAG
CAATCCACGACTCGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCTTCGCCCGCCCACTCA
Found at i:10117254 original size:902 final size:895
Alignment explanation
Indices: 10115820--10118179 Score: 3342
Period size: 902 Copynumber: 2.6 Consensus size: 895
10115810 GTTGGCTTAG
* * * * * *
10115820 GCATACGGAGTTCAATCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCAGCAGCACATCCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGG
* * * * * **
10115885 CTCGAGCATGTGTTGGTGCCACATTTTTCTTC-ACTGGGGCACCATCGTTGGAGCATCGTCGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATTG-CGGAGCATCG-CCAAG
* * * *
10115949 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGAACATGATGT
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
10116014 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
10116079 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTACCCATTAAAGTGTCTAAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
10116144 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GATTTTTTT
* * * *
10116209 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTTTCAAAAA
384 GTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AGGTTTGGGCCAAAACTCCTTCCAAAAA
** *
10116274 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
448 AATTTTAAAAAATCCTGAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
10116339 TGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGC
** *
10116404 ATTGGCACGCAAAAATATGAAGAAGTGCCTAAACCCACCTACAACCCTATCAATCCACAGCTTGC
577 ATTGGCAAACAAAAATATGAAGAAGTGCCTAAACCCACCTACAACCCTATCAACCCACAGCTTGC
* * * * * *
10116469 GCATCCTGTCTCTCTGGCTGGTGTAGTGCCCGCCCTTTCGCCCGCCCACTCGTTTCGTCAGTTGG
642 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCGTCAGTTGC
* * *
10116534 CTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTCTGGCAGTAGGAT
707 CTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTCAGGCAGCAAGAT
* * * * * * *
10116599 CGGTAGTACGC-AGAGGGGGACCCGATCGATCCTTGACTTGCGCATCTCGCCCCTCTGGCCGGTT
772 CGGTAGCAC-CTAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCACCCCTCTGACCGGCT
* * *
10116663 GAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATA-CGAGTTCATTCCCAGTCTAA
* * * **
10116724 GCATACAGAGTTCATTCCCAGTTTAAGATCGGATCGGACTGAGGGTTACAACAGCACATGCTACG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGG
*
10116789 CTCGGGCATGTGTTGATGCCGCATTTTTCTTCGTCGGGGCACCATTGCAGGAGCATCGCCATAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGC-GGAGCATCGCCA-AGA
* *
10116854 ACCTGACCTGCGGCATTGGGGTTCCGACGATC-GGAGGGCTGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
10116918 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACA
10116983 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
10117048 GGGACACTTGTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTGT
* * * *
10117113 GTATGCCAACAAAAATATAAGGATCATGTCTACCAGGTTTGGGACCACAACTCCTTCCAAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGG-CCAAAACTCCTTCCAAAAAAA
*
10117178 TTTTAAAAAATCCTGAACTGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
450 TTTTAAAAAATCCTGAACCGTAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * **
10117243 CCATGAAACTTCACATGAAAGCTTAAAGGACCATTGTATGCATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCAT
* * * * * *
10117308 TGGCAAACATAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGACCCACGGCTTGCGC
579 TGGCAAACAAAAATATGAAGAAGTGCCTAAACCCACCTACAACCCTATCAACCCACAGCTTGCGC
** *
10117373 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGTTCGTTTCGTCGGTTGCCT
644 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCGTCAGTTGCCT
* ** ** *** * * *
10117438 TAGGCATACGGAGTTCATTCGTAGTCTAAGATTGGACTGGATTGAGGGTTGAGGTAGCAAGATCG
709 TAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTCAGGCAGCAAGATCG
* * * *
10117503 GTAGCACCTAGAGGGGGACTCGGTCGATCCTCGGCTTACGCATCCCACCCCTCTGATCGGCTGAG
774 GTAGCACCTAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCACCCCTCTGACCGGCTGAG
* * *
10117568 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGATTTCATTCTCAGTCTAA
839 CGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAGTTCATTCCCAGTCTAA
* *
10117625 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGG
* * * * * * * * *
10117690 CTTGGGCATGTGCTGGTGTCGTATTTTTCTTTGTAGAGGCACCATCTTCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-TGCGGAGCATCG-CCAAGA
10117755 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
10117820 ATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCTATCCCTAATCAAACCTCGAGAACTCACACC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
10117885 CCTTTAAAAAGCATTTGAAATTTTATAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
10117950 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTATGCA
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCA
* *
10118015 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAGGTTT-GGGCCAAAACTCCTTCCAAAAAAATTT
* * *
10118080 TAAAAAAT-CTCGAACCGTAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTCGCCA
453 TAAAAAATCCT-GAACCGTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
10118144 TGAAACTTCCCGTGAAGGCTTAAGGGACCAATGTAT
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
10118180 GCAGCCCGTC
Statistics
Matches: 1297, Mismatches: 145, Indels: 34
0.88 0.10 0.02
Matches are distributed among these distances:
898 72 0.06
899 83 0.06
900 144 0.11
901 235 0.18
902 622 0.48
903 5 0.00
904 135 0.10
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCGGAGCATCGCCAAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAA
AAAATCCTGAACCGTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAAA
CAAAAATATGAAGAAGTGCCTAAACCCACCTACAACCCTATCAACCCACAGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCCCACTCGTTTCGTCAGTTGCCTTAGGCAC
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTCAGGCAGCAAGATCGGTAGCAC
CTAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCACCCCTCTGACCGGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTAACTTAGGCATACGAGTTCATTCCCAGTCTAA
Found at i:10117640 original size:26 final size:25
Alignment explanation
Indices: 10117600--10117651 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
10117590 GTTAACTTAG
* *
10117600 GCATACGATTTCATTCTCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
10117625 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
10117651 G
1 G
10117652 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:10119316 original size:26 final size:26
Alignment explanation
Indices: 10119279--10119331 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10119269 GTTGACTTAG
* *
10119279 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGTAGTTCATTCCCAATCTAA
10119305 GCATACAG-AGTTCATTCCCAATCTAA
1 GCATAC-GTAGTTCATTCCCAATCTAA
10119331 G
1 G
10119332 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCCAATCTAA
Found at i:10121106 original size:26 final size:26
Alignment explanation
Indices: 10121075--10121127 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10121065 GTTGACTTAG
10121075 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10121101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10121127 G
1 G
10121128 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10121422 original size:892 final size:891
Alignment explanation
Indices: 10118397--10121863 Score: 4575
Period size: 892 Copynumber: 3.9 Consensus size: 891
10118387 GTTGACTTAG
* * *
10118397 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
10118462 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTC-GGAGCATCATCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CAGGAGCATCATCGGAG
* * * * *
10118526 AACTTGACCGACGACATTGGGGTTCTGACGATCGGGGGGGCCGATGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGGCCG--GGGGTGTGCGCACATGATGT
**
10118591 GCGATGGGTGCTGGTACTTGGCCCTTATATTATCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
10118656 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
10118721 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
10118786 GTGCATTCCAA-AAAAGATACGGGGATCACA-TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
388 GTGCATGCCAACAAAA-ATACAAGGATCA-AGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * * ** * *
10118849 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAATTTGTGAAAAATAGAAAACGAGTTGC
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
10118914 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGCATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
10118979 GCATTGGTACGCACAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
581 GCATTGGTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
10119044 GCACATCCCGTCTCTCTGGTCGATGTAGTGCCCGCCTGCCCGTCCGCCTGCCCGTTCGTTTCGTC
646 GCGCATCCCGTCTCTCTGGCCGACGTAGT----GCC--CCCG--C-CC-G--C--TCGTTTCATC
* ** * *
10119109 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGCAGCAG
697 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAG
* * * * *
10119174 CAGGATCGGTACCACGTAGAGGGGGACTGGGCCAATCCTCGGCTTGCGCATCCCACCCCTCTGGC
762 CAGGATCGGTAGCACGTAGAGGGGGAC-CGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
10119239 CGGCTGAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GTAGTTCATTCCTAGTCT
826 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCT
10119303 AA
890 AA
* * ** * * *
10119305 GCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGCTGCGACAGTACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
10119370 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCTCCGGAGCAT--TGCTGGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCAT-C-GGA
* * * * *
10119433 GAACTTGACCGACAGCATTGCGGTTCCAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGGCC-GGGGGTGTGCGCACATGATGT
10119498 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
10119563 CACCCCCTTAAAGAGCA-TTGCAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGAGTCTGAC
258 CACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* *
10119627 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
10119692 TGTGCATGTCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAGAAAAATCCTTCCG-A
387 TGTGCATG-CCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * * * *
10119756 AAAATTTTTAAAAATCCTGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
10119821 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTAGAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
10119886 GCATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTT
581 GCATTGGTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
10119951 GCGTATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCACCCGCCTGCTCGTTTTAATCGGT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCG------C-CC-GCTCG-TTTCATCGGT
* * * * * * * * *
10120016 TGGCTTAGGCATACGAAGTTCATTCCTAGTCTAGGATCGGACCCAACCGAAGGTTGCGACAGTAG
700 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAG
* * *
10120081 GATCGGTAGCACGTAGAGAGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGA
765 GATCGGTAGCACGTAGAGGGGGA-CCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
10120146 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAA
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * *
10120209 GCTTACGGAGCTCATTCCTAGTCTAAGATCGGATCAAACCGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
10120274 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCGCTGGTGC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---GCA-----GGAGC
* * * *
10120339 ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGAT-C-----G--GGGGGTGTGGGCA
120 ATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGGCCGGGGGTGTGCGCA
* * *
10120396 CATGATGTGTGATGGGTGCTGGCACTTGGCCCTTATATTTG-CCCCTATCCCTCATCAAACCTCG
185 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
10120460 AGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGT
250 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
10120525 GTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
315 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
10120590 ATTTTTTTTTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGCGCCAAAACTCCT
380 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCT
* *
10120655 TCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT-AAAAAGTAGAAAAC
445 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAA-TAGAAAAC
* *
10120719 GAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCAT
509 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
10120784 AAAAATGGCATTGGGACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
574 AAAAATGGCATTGGTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
10120849 ACAGCTTGCGCATCCCGTCTTTCTGGCCTACGTAGTG-CCCCGCCCACTCGTTTCATCAGTTGGC
639 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCTCGTTTCATCGGTTGGC
** * * * * * **
10120913 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGGTAGCAAGAGA
704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATC
* * * * * **
10120978 AGTAGCATGTAGAGGGGGACCGACTGATCCACGACTTGCGCATCCCGCTTCTCTGGCCGGCTGAG
769 GGTAGCACGTAGAGGGGGACCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * *
10121043 CGCCCATACACTCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
10121101 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
10121166 CTGGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCATCGGAGA
** * *
10121231 ACCTGACCGGTGGCATTAGGGTTCCGACGATCCGGGGGGTCGAGGGGATGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGGCCG-GGGG-TGTGCGCACATGATGTG
10121296 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
10121361 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * *
10121426 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACAGAATTTTTCTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
10121491 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
10121556 ATTTTAAAAAATCCCGAACCTCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
10121621 GCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
10121686 TTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
10121751 CATCCCGTCTCTCTGGCC-AGCGTAGTG--CCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
649 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * *
10121813 TGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGATACGGCAGCA
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCA
10121864 CATGCTGAGC
Statistics
Matches: 2264, Mismatches: 250, Indels: 107
0.86 0.10 0.04
Matches are distributed among these distances:
881 42 0.02
882 1 0.00
886 3 0.00
887 1 0.00
889 2 0.00
890 4 0.00
891 122 0.05
892 601 0.27
893 82 0.04
894 4 0.00
895 2 0.00
896 1 0.00
902 4 0.00
903 10 0.00
904 320 0.14
905 356 0.16
906 57 0.03
907 418 0.18
908 190 0.08
909 6 0.00
910 1 0.00
915 36 0.02
916 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGGCCGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGGTAGCACGTAG
AGGGGGACCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:10122467 original size:705 final size:707
Alignment explanation
Indices: 10121101--10122491 Score: 2187
Period size: 705 Copynumber: 2.0 Consensus size: 707
10121091 CCCAGTCTAA
* * *
10121101 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGATACGGCAGCACATGCTGAG
* *
10121166 CTGGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCACCGGAGA
* *** * *
10121231 ACCTGACCGGTGGCATTAGGGTTCCGACGATCCGGGGGGTCGAGGGGATGTGCGCACATGATGTG
131 ACATGACCAACGGCATTAGGGTTCCGACGATCCGGGGGGTCCAGGGGATGTGCGAACATGATGTG
*
10121296 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
10121361 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAAAC
*
10121426 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACAGAATTTTTCTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACAGAATTTTTCTG
* ** *
10121491 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAA
391 TGCATGCCAACAAAAATAAAAGGATCAAGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAAAAA
* * * * ** *
10121556 ATTTTAAAAAATCCCGAACCTCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
456 AGTTTAAAAAATCACAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
* *
10121621 GCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
521 GCCATGAAACTTCACCTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCAACAAAAATGGCA
* *
10121686 TTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
**
10121751 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
651 CATCCCGTCTCTCTAACCAGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
* *
10121808 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGATACGGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGATACGGCAGCACATGCTGAG
10121873 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CAGGAGCATCACCGGAG
* * *
10121937 AACATGACCAACGGCATTAGGGTTCCGGCGAT-CGGGGGG-CCAGGGGGTGTGGGAACATGATGT
130 AACATGACCAACGGCATTAGGGTTCCGACGATCCGGGGGGTCCAGGGGATGTGCGAACATGATGT
* * *
10122000 GCGATGGGTGGTTGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
10122065 C-CCCTCCTTAAGGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 CACCC-CCTTAAAGACCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAA
* * *
10122129 ACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACAGAATTTTTC
* * ***
10122194 TGTGCATGCCAACAAAAATACAAGGATCAAGTCTACTAAGTTTGGCATTGAAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATAAAAGGATCAAGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAAA
*
10122259 AAAGTTTAAAAAATCACAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTCGTC
454 AAAGTTTAAAAAATCACAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
* ** *
10122324 TTGCCGTGAAACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
519 TTGCCATGAAACTTCACCTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCAACAAAAATGG
10122389 CATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
10122454 CTCATCTCGTCTCTCTAACCGGCGTAGTGCCCGCCCGC
649 CGCATCCCGTCTCTCTAACCAGCGTAGTGCCCGCCCGC
10122492 CCGCCCGTCT
Statistics
Matches: 621, Mismatches: 61, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
704 3 0.00
705 463 0.75
706 7 0.01
707 147 0.24
708 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (707 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGATACGGCAGCACATGCTGAG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCACCGGAGA
ACATGACCAACGGCATTAGGGTTCCGACGATCCGGGGGGTCCAGGGGATGTGCGAACATGATGTG
CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTAAAAC
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACAGAATTTTTCTG
TGCATGCCAACAAAAATAAAAGGATCAAGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAAAAA
AGTTTAAAAAATCACAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
GCCATGAAACTTCACCTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCAACAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTAACCAGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
Found at i:10123982 original size:703 final size:704
Alignment explanation
Indices: 10122652--10124051 Score: 1933
Period size: 703 Copynumber: 2.0 Consensus size: 704
10122642 GCAGGCTGAG
* * * *
10122652 CGCCCGCACGATCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGATCGGAC
1 CGCCCGCACGATCGTTTCGTCGGTTGACTTAGGCATACAGAGTGCATCCCAGTCTAAGATCGGAC
* **
10122717 CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGGATGTGCTGGTGCCGCATTTTTCTTCGT
66 CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* *
10122782 CGGGGCACCATCACCGGAGCATCACCGGAGAGCCTGACCCACGACATTGGGGTTTCGACGATCGG
131 CGGGGCACCAT--CC-G-G-AT--CCGGAGAACCTGACCCACGACATTGGGGTTCCGACGATCGG
* * **
10122847 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGTACTTGGCCCTTATATTGGCCCCC
189 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGGGCGGTACTTGGCCCTCATATTGGCAACC
*
10122912 TATCCCTCACTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
254 TATCCCTCACTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
10122977 TGCCGGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTAC
319 TGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTAC
* *
10123042 ACTTCGAGTTTTGAGCAAATATTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
384 ACTTCGAGTTTTGAGCAAATATTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAA
* * * * *
10123107 TTTGGGGTCAAAACTCCTTCCGAAAAAATTTTTAAAAAATCTCGAACCACAAAAAGTTTCGAATA
449 TTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAA
* * *
10123172 TGCGTGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
514 TGCATGAAAAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* * *
10123237 GTATGAATTTACAAGCCAAAAAATGGCATTGGCACACAAAAATATGAAGATTTGCCTAAACCCAC
579 CTATGAATTTACAAGCCAAAAAATGGCATTGGCACACAAAAATATGAAAATGTGCCTAAACCCAC
* * *
10123302 CTA-CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGGTGTAGTGCCCGCC
644 CTACCACCCGATCGATCCACGGCTTGCGCATCCTGCCTCTCCGGTCGGTGTAGTGCCCGCC
* * * *
10123362 CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTGCAATCCCAGTCTAAGATCGGA
1 CGCCCGCACGATCGTTTCGTCGGTTGACTTAGGCATACAGAGTGC-ATCCCAGTCTAAGATCGGA
* * * ** *
10123427 CCGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA
65 CCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
*** * *
10123492 CCGGGGCACCAT-C-G-T-CGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGCGGC
130 CCGGGGCACCATCCGGATCCGGAGAACCTGACCCACGACATTGGGGTTCCGACGATCGGGG-GGC
* *
10123553 CGGGGGGTGTGTGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTCATATTGGCAACCTGTC
194 CGGGGGGTGTGCGCACATGATGTGCGATGGGGGC-GGTACTTGGCCCTCATATTGGCAACCTATC
*
10123618 CCTCA-TGAATCCTCTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
258 CCTCACT-AAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
10123682 CCAGTAGCCGTTTAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACGAAATCTTCTCCAC
321 CCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTACAC
* * * *
10123747 TTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACAAAA
386 TTCGAGTTTTGAGC-AAATATTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACAAAA
* **
10123811 TTTGGGGCCAAAA-T-CTAT-CTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
449 TTTGGGGCCAAAACTCCT-TCCGAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAA
* *
10123873 AT-CATGAAAAATAGAAAACGAGTCATCTTG-CATTGAAACTTCACATGAAGGCTTAGGGGACCA
513 ATGCATGAAAAAGAGAAAACGAGTCATCTTGCCA-TGAAACTTCACATGAAGGCTTAAGGGACCA
* * *
10123936 TTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAAAAATTTGAAAATGTGGCTAAAC
577 TTCTATGAATTTACAAGCCA-AAAAATGGCATTGGCAC-ACAAAAATATGAAAATGTGCCTAAAC
*
10124001 CCACCTACCACCCGATCGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCG
640 CCACCTACCACCCGATCGATCCACGGCTTGCGCATCCTGCCTCTCCGGTCG
10124052 ACTGAGCGCC
Statistics
Matches: 609, Mismatches: 69, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
700 37 0.06
701 108 0.18
702 95 0.16
703 155 0.25
704 88 0.14
705 1 0.00
708 1 0.00
710 38 0.06
711 86 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (704 bp):
CGCCCGCACGATCGTTTCGTCGGTTGACTTAGGCATACAGAGTGCATCCCAGTCTAAGATCGGAC
CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
CGGGGCACCATCCGGATCCGGAGAACCTGACCCACGACATTGGGGTTCCGACGATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGGGCGGTACTTGGCCCTCATATTGGCAACCTATCCCT
CACTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTACACTTCGA
GTTTTGAGCAAATATTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAATTTGGGG
CCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATGCATGA
AAAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTCTATGAA
TTTACAAGCCAAAAAATGGCATTGGCACACAAAAATATGAAAATGTGCCTAAACCCACCTACCAC
CCGATCGATCCACGGCTTGCGCATCCTGCCTCTCCGGTCGGTGTAGTGCCCGCC
Found at i:10126749 original size:58 final size:59
Alignment explanation
Indices: 10126622--10126903 Score: 356
Period size: 58 Copynumber: 4.7 Consensus size: 59
10126612 TCTTGTGTAG
* ** ** * *
10126622 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTGGAAACTTTATTTCTAA
* *
10126682 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTCTGGAAA-TTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTATTTCTAA
*
10126740 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTTGGAAACTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA----TATTTTTTTGGAAACTTT-ATTTCT-AA
*
10126804 GGAAAATTGATACTTT-AACTTTTCCCTAAAAATATTTTTTTTGGAAA-TTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAACTTTATTTCTAA
*
10126862 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
10126904 TTGGAAATTT
Statistics
Matches: 199, Mismatches: 13, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
58 71 0.36
59 32 0.16
60 43 0.22
62 12 0.06
63 19 0.10
64 22 0.11
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTATTTCTAA
Found at i:10126855 original size:122 final size:119
Alignment explanation
Indices: 10126622--10126920 Score: 433
Period size: 122 Copynumber: 2.5 Consensus size: 119
10126612 TCTTGTGTAG
* ** * *
10126622 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTT--AAATTTTATTTTTAAGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTTTGGAAATTTGATTTTCAAGAA
10126685 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTCTGGAAATTTATTTCTAA
65 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTCTGGAAATTTATTTCTAA
*
10126740 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTTTGGAAACTTTGATTTTCAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--TATTTTTTTTTGGAAA-TTTGATTTTCAAG
* * *
10126805 GAAAATTGATACTTT-AACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTCTAA
63 AAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTCTGGAAATTTATTTCTAA
*
10126862 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAA-TTTGATTTT
10126921 TATTTAAAGA
Statistics
Matches: 164, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
118 32 0.20
119 9 0.05
120 24 0.15
121 20 0.12
122 79 0.48
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.46
Consensus pattern (119 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTGATTTTCAAGAAA
AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTCTGGAAATTTATTTCTAA
Found at i:10126958 original size:11 final size:10
Alignment explanation
Indices: 10126937--10127003 Score: 66
Period size: 11 Copynumber: 6.6 Consensus size: 10
10126927 AAGAAAACAG
10126937 AATAATAAAAA
1 AATAA-AAAAA
*
10126948 AATAAATAAA
1 AATAAAAAAA
10126958 AAT--AAAAA
1 AATAAAAAAA
*
10126966 AATAAAGAAA
1 AATAAAAAAA
*
10126976 AGTAAAACAAA
1 AATAAAA-AAA
10126987 AATAAAAATAA
1 AATAAAAA-AA
10126998 AATAAA
1 AATAAA
10127004 GATAAAAAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 7 0.15
10 17 0.37
11 22 0.48
ACGTcount: A:0.81, C:0.01, G:0.03, T:0.15
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:10126963 original size:18 final size:18
Alignment explanation
Indices: 10126940--10126999 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
10126930 AAAACAGAAT
10126940 AATAAAAAAATAAATAAA
1 AATAAAAAAATAAATAAA
*
10126958 AATAAAAAAATAAAGAAA
1 AATAAAAAAATAAATAAA
* *
10126976 AGTAAAACAA-AAATAAA
1 AATAAAAAAATAAATAAA
10126993 AATAAAA
1 AATAAAA
10127000 TAAAGATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
17 12 0.32
18 25 0.68
ACGTcount: A:0.82, C:0.02, G:0.03, T:0.13
Consensus pattern (18 bp):
AATAAAAAAATAAATAAA
Found at i:10127008 original size:17 final size:16
Alignment explanation
Indices: 10126944--10127011 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 16
10126934 CAGAATAATA
10126944 AAAAAATAAATAAAAAT
1 AAAAAA-AAATAAAAAT
10126961 AAAAAAATAA-AGAAAAGT
1 AAAAAAA-AATA-AAAA-T
10126979 AAAACAAAAATAAAAAT
1 AAAA-AAAAATAAAAAT
*
10126996 AAAATAAAGATAAAAA
1 AAAA-AAAAATAAAAA
10127012 GAATATTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
16 2 0.05
17 27 0.61
18 11 0.25
19 4 0.09
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.13
Consensus pattern (16 bp):
AAAAAAAAATAAAAAT
Found at i:10128047 original size:14 final size:16
Alignment explanation
Indices: 10128028--10128078 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
10128018 AAAAATTATA
10128028 ATATAA-TA-ATAAAT
1 ATATAACTATATAAAT
10128042 ATATAACTATATAAAT
1 ATATAACTATATAAAT
* *
10128058 AAATTAC-ATATAAAT
1 ATATAACTATATAAAT
10128073 AT-TAAC
1 ATATAAC
10128079 AGAGAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAACTATATAAAT
Found at i:10128136 original size:28 final size:27
Alignment explanation
Indices: 10128083--10128144 Score: 63
Period size: 28 Copynumber: 2.2 Consensus size: 27
10128073 ATTAACAGAG
* *
10128083 AAAAAAATAAATAAATAAAGATATACAT
1 AAAATAAT-AATAAATAAAGAAATACAT
*
10128111 AATAATAATAATAAATAATA-AAATACCT
1 AA-AATAATAATAAATAA-AGAAATACAT
10128139 AAAATA
1 AAAATA
10128145 CAAAAGAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 4 0.14
28 19 0.66
29 6 0.21
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (27 bp):
AAAATAATAATAAATAAAGAAATACAT
Found at i:10128368 original size:10 final size:10
Alignment explanation
Indices: 10128343--10128407 Score: 85
Period size: 10 Copynumber: 6.2 Consensus size: 10
10128333 AACATTGTCA
*
10128343 TTTTTTATTT
1 TTTTTTGTTT
10128353 TGTTTTGTGTTT
1 T-TTTT-TGTTT
10128365 TTTTTTGTTGT
1 TTTTTTGTT-T
*
10128376 TTTTTTGTTG
1 TTTTTTGTTT
10128386 TTTTTTGTTT
1 TTTTTTGTTT
10128396 TTTTTTGTTT
1 TTTTTTGTTT
10128406 TT
1 TT
10128408 GACCAAAGCT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
10 26 0.53
11 18 0.37
12 5 0.10
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.85
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:10128369 original size:11 final size:11
Alignment explanation
Indices: 10128350--10128407 Score: 61
Period size: 11 Copynumber: 5.4 Consensus size: 11
10128340 TCATTTTTTA
10128350 TTTTGTTTTGTG
1 TTTT-TTTTGTG
10128362 TTTTTTTT-TG
1 TTTTTTTTGTG
10128372 TTGTTTTTT-TG
1 TT-TTTTTTGTG
10128383 TTGTTTTTTGT-
1 TT-TTTTTTGTG
10128394 TTTTTTTTGT-
1 TTTTTTTTGTG
10128404 TTTT
1 TTTT
10128408 GACCAAAGCT
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
10 16 0.36
11 23 0.52
12 5 0.11
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (11 bp):
TTTTTTTTGTG
Found at i:10128387 original size:31 final size:32
Alignment explanation
Indices: 10128343--10128404 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
10128333 AACATTGTCA
*
10128343 TTTTTTATTTTGTTTTGTGTTTTTTTTTGTTG
1 TTTTTTATGTTGTTTTGTGTTTTTTTTTGTTG
*
10128375 TTTTTT-TGTTGTTTTTTGTTTTTTTTTGTT
1 TTTTTTATGTTGTTTTGTGTTTTTTTTTGTT
10128405 TTTGACCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 22 0.79
32 6 0.21
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.84
Consensus pattern (32 bp):
TTTTTTATGTTGTTTTGTGTTTTTTTTTGTTG
Found at i:10128509 original size:42 final size:41
Alignment explanation
Indices: 10128415--10128668 Score: 377
Period size: 41 Copynumber: 6.1 Consensus size: 41
10128405 TTTGACCAAA
* *
10128415 GCTCATCTAAACCGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
10128456 GCTCCTTTAAACAGAGGCACCACGATTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
* *
10128498 GCTCCTCTAAACAGAGGCAACACGACTTTGGGAAAGTATATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GGAAAGTAAATT
* *
10128540 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAATTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
10128581 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
10128622 GCTCCTCTAAACAGAGGCA--ACGAAACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG--ACTTTGGAAAGTAAATT
10128663 GCTCCT
1 GCTCCT
10128669 TGACAATCAT
Statistics
Matches: 194, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
41 117 0.60
42 72 0.37
43 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:10129707 original size:16 final size:16
Alignment explanation
Indices: 10129682--10129758 Score: 68
Period size: 16 Copynumber: 4.8 Consensus size: 16
10129672 TTTCAATCAC
10129682 TTTTTCATTTTTTATT
1 TTTTTCATTTTTTATT
* *
10129698 TTTTTTATTTTTTGTT
1 TTTTTCATTTTTTATT
*
10129714 TTTTTCATCATTTTTAAT
1 TTTTTCAT--TTTTTATT
*
10129732 TTTTTC-TCTTTT-TT
1 TTTTTCATTTTTTATT
* *
10129746 TTTATAATTTTTT
1 TTTTTCATTTTTT
10129759 TCAAGCATAG
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
14 5 0.10
15 9 0.19
16 21 0.44
17 1 0.02
18 12 0.25
ACGTcount: A:0.13, C:0.06, G:0.01, T:0.79
Consensus pattern (16 bp):
TTTTTCATTTTTTATT
Found at i:10129759 original size:43 final size:44
Alignment explanation
Indices: 10129670--10129762 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 44
10129660 TGAGTCCTCC
* *
10129670 TTTTTCAATCACTTTTTCATTTTTTATTTTTTTTATTTTTTGTT
1 TTTTTCAATCACTTTTTAATTTTTTATTTTTTTTATTTATTGTT
* * **
10129714 TTTTTC-ATCA-TTTTTAATTTTTTCTCTTTTTT-TTTATAATT
1 TTTTTCAATCACTTTTTAATTTTTTATTTTTTTTATTTATTGTT
10129755 TTTTTCAA
1 TTTTTCAA
10129763 GCATAGTACT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
41 12 0.29
42 20 0.48
43 4 0.10
44 6 0.14
ACGTcount: A:0.16, C:0.10, G:0.01, T:0.73
Consensus pattern (44 bp):
TTTTTCAATCACTTTTTAATTTTTTATTTTTTTTATTTATTGTT
Found at i:10137921 original size:30 final size:30
Alignment explanation
Indices: 10137885--10137944 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
10137875 GGATTTTTCC
10137885 ATGCTTTGATCATCTCATTCATCCTCTGAA
1 ATGCTTTGATCATCTCATTCATCCTCTGAA
10137915 ATGCTTTGATCATCTCATTCATCCTCTGAA
1 ATGCTTTGATCATCTCATTCATCCTCTGAA
10137945 TAACTTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.40
Consensus pattern (30 bp):
ATGCTTTGATCATCTCATTCATCCTCTGAA
Found at i:10139179 original size:62 final size:62
Alignment explanation
Indices: 10139105--10139404 Score: 423
Period size: 62 Copynumber: 4.9 Consensus size: 62
10139095 TTGTGTAGGA
* *
10139105 AAAACTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTTGGAAACTTTGATTTTCAAGG
* ** * * *
10139167 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTTCGAAA-TTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTTGGAAACTTTGATTTTCAAGG
*
10139227 AAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTTGGAAACTTTGATTTTCAAGG
* *
10139289 AAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTT--AAAC-TT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAAT-CTTTTTTTTTGGAAACTTTGATTTTCAAGG
* * *
10139348 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTTGGAAACTTTGATTTT
10139405 TATTTAAAGA
Statistics
Matches: 209, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
58 9 0.04
59 39 0.19
60 47 0.22
61 28 0.13
62 77 0.37
63 9 0.04
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (62 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTTGGAAACTTTGATTTTCAAGG
Found at i:10139370 original size:121 final size:122
Alignment explanation
Indices: 10139105--10139404 Score: 512
Period size: 122 Copynumber: 2.5 Consensus size: 122
10139095 TTGTGTAGGA
*
10139105 AAAACTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAAGGAAA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAAGGAAA
* *
10139170 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTCGAAATTTTATTTTTAAGG
66 ATTGATACTTTCAACTTTTCCTCAAAAACACTTTTTTTCGAAATCTTATTTTTAAGG
10139227 AAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAAGGAAA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAAGGAAA
* **
10139292 ATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTTTAAA-CTTATTTTTAAGG
66 ATTGATACTTTCAACTTTTCCTCAAAAACACTTTTTTTCGAAATCTTATTTTTAAGG
* * *
10139348 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTT
10139405 TATTTAAAGA
Statistics
Matches: 169, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
121 66 0.39
122 103 0.61
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (122 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTTGGAAACTTTGATTTTCAAGGAAA
ATTGATACTTTCAACTTTTCCTCAAAAACACTTTTTTTCGAAATCTTATTTTTAAGG
Found at i:10139447 original size:6 final size:6
Alignment explanation
Indices: 10139424--10139496 Score: 62
Period size: 6 Copynumber: 12.3 Consensus size: 6
10139414 AAAACAGAAT
* * * *
10139424 AATAAA AAAAATA AATAAA AATAAA AA-AATA AAGAAA AGT-AA AACAAA
1 AATAAA AATAA-A AATAAA AATAAA AATAA-A AATAAA AATAAA AATAAA
*
10139472 AATAAA AAT-AA AATAAA GATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
10139497 GAATATTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 10 0.19
6 36 0.68
7 7 0.13
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (6 bp):
AATAAA
Found at i:10139451 original size:18 final size:18
Alignment explanation
Indices: 10139428--10139575 Score: 81
Period size: 18 Copynumber: 7.9 Consensus size: 18
10139418 CAGAATAATA
10139428 AAAAAAATAAATAAAAAT
1 AAAAAAATAAATAAAAAT
* *
10139446 AAAAAAATAAAGAAAAGT
1 AAAAAAATAAATAAAAAT
*
10139464 AAAACAA-AAATAAAAAT
1 AAAAAAATAAATAAAAAT
* * *
10139481 AAAATAA-AGATAAAAAG
1 AAAAAAATAAATAAAAAT
* *
10139498 AATATTAAATAAACCTAATCTAAT
1 AA-A-AAAATAAA--TAA--AAAT
*
10139522 AAATAAAA-AATTAAAAA-
1 AAA-AAAATAAATAAAAAT
*
10139539 AAAAGCAAATAAATGAAAAT
1 AAAA--AAATAAATAAAAAT
10139559 AAAAAAATTAAA-AAAAA
1 AAAAAAA-TAAATAAAAA
10139576 AAACCTGGAG
Statistics
Matches: 99, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
16 1 0.01
17 27 0.27
18 35 0.35
19 13 0.13
20 9 0.09
22 5 0.05
23 5 0.05
24 4 0.04
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (18 bp):
AAAAAAATAAATAAAAAT
Found at i:10139452 original size:22 final size:22
Alignment explanation
Indices: 10139421--10139510 Score: 67
Period size: 23 Copynumber: 4.0 Consensus size: 22
10139411 AAGAAAACAG
*
10139421 AATAATAAAAAAAATAAATAAA
1 AATAAAAAAAAAAATAAATAAA
10139443 AATAAAAAAATAAAGA-AAAGT-AA
1 AATAAAAAAA-AAA-ATAAA-TAAA
* *
10139466 AACAAAAATAAAAATAAAATAAA
1 AATAAAAAAAAAAAT-AAATAAA
* * * *
10139489 GATAAAAAGAATATTAAATAAA
1 AATAAAAAAAAAAATAAATAAA
10139511 CCTAATCTAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
21 1 0.02
22 20 0.37
23 31 0.57
24 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (22 bp):
AATAAAAAAAAAAATAAATAAA
Found at i:10139454 original size:27 final size:27
Alignment explanation
Indices: 10139424--10139575 Score: 80
Period size: 27 Copynumber: 5.4 Consensus size: 27
10139414 AAAACAGAAT
10139424 AATAAAAAAAATAAATAAAAATAAAAA
1 AATAAAAAAAATAAATAAAAATAAAAA
* *
10139451 AATAAAGAAAAGTAAA-ACAAAA-ATAAA
1 AATAAA-AAAAATAAATA-AAAATAAAAA
10139478 AATAAAATAAAGATAAA-AAGAATATTAAATAA
1 AATAAAA-AAA-ATAAATAA-AA-A-TAAA-AA
* *** *
10139510 ACCT-AATCTAATAAATAAAAAATTAAAA
1 A-ATAAAAAAAATAAAT-AAAAATAAAAA
** *
10139538 AA-AAAGCAAATAAATGAAAATAAAAA
1 AATAAAAAAAATAAATAAAAATAAAAA
10139564 AATTAAAAAAAA
1 AA-TAAAAAAAA
10139576 AAACCTGGAG
Statistics
Matches: 94, Mismatches: 16, Indels: 29
0.68 0.12 0.21
Matches are distributed among these distances:
26 12 0.13
27 31 0.33
28 28 0.30
29 4 0.04
30 6 0.06
31 5 0.05
32 7 0.07
33 1 0.01
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (27 bp):
AATAAAAAAAATAAATAAAAATAAAAA
Found at i:10139461 original size:11 final size:10
Alignment explanation
Indices: 10139427--10139488 Score: 65
Period size: 10 Copynumber: 6.2 Consensus size: 10
10139417 ACAGAATAAT
10139427 AAAAAAAATA
1 AAAAAAAATA
*
10139437 AATAAAAAT-
1 AAAAAAAATA
10139446 -AAAAAAATA
1 AAAAAAAATA
* *
10139455 AAGAAAAGTA
1 AAAAAAAATA
10139465 AAACAAAAATA
1 AAA-AAAAATA
10139476 AAAATAAAATA
1 AAAA-AAAATA
10139487 AA
1 AA
10139489 GATAAAAAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
8 7 0.17
10 18 0.43
11 17 0.40
ACGTcount: A:0.82, C:0.02, G:0.03, T:0.13
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:10139496 original size:17 final size:16
Alignment explanation
Indices: 10139421--10139495 Score: 59
Period size: 14 Copynumber: 4.8 Consensus size: 16
10139411 AAGAAAACAG
*
10139421 AATAATAAAAAAAAT-A
1 AATAA-AAATAAAATAA
10139437 AATAAAAAT-AAA-AA
1 AATAAAAATAAAATAA
* *
10139451 AATAAAGA-AAAGTAA
1 AATAAAAATAAAATAA
*
10139466 AACAAAAATAAAAATAA
1 AATAAAAAT-AAAATAA
*
10139483 AATAAAGATAAAA
1 AATAAAAATAAAA
10139496 AGAATATTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
14 13 0.28
15 11 0.24
16 9 0.20
17 13 0.28
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.15
Consensus pattern (16 bp):
AATAAAAATAAAATAA
Found at i:10139572 original size:9 final size:8
Alignment explanation
Indices: 10139428--10139578 Score: 58
Period size: 8 Copynumber: 17.5 Consensus size: 8
10139418 CAGAATAATA
10139428 AAAAAAAT
1 AAAAAAAT
10139436 AAATAAAAAT
1 -AA-AAAAAT
10139446 AAAAAAAT
1 AAAAAAAT
10139454 AAAGAAAAGT
1 AAA-AAAA-T
10139464 AAAACAAA-
1 AAAA-AAAT
10139472 AATAAAAAT
1 AA-AAAAAT
10139481 AAAATAAAGAT
1 -AAA-AAA-AT
10139492 AAAAAGAAT
1 AAAAA-AAT
**
10139501 -ATTAAAT
1 AAAAAAAT
**
10139508 AAACCTAAT
1 AAA-AAAAT
* *
10139517 CTAATAAAT
1 -AAAAAAAT
*
10139526 AAAAAATT
1 AAAAAAAT
10139534 AAAAAAA-
1 AAAAAAAT
**
10139541 AAGCAAAT
1 AAAAAAAT
10139549 AAATGAAAAT
1 AAA--AAAAT
10139559 AAAAAAATT
1 AAAAAAA-T
10139568 AAAAAAA-
1 AAAAAAAT
10139575 AAAA
1 AAAA
10139579 CCTGGAGCGG
Statistics
Matches: 109, Mismatches: 16, Indels: 36
0.68 0.10 0.22
Matches are distributed among these distances:
7 12 0.11
8 34 0.31
9 30 0.28
10 31 0.28
11 2 0.02
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (8 bp):
AAAAAAAT
Found at i:10139920 original size:20 final size:20
Alignment explanation
Indices: 10139895--10139933 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
10139885 AATTGAAGAT
*
10139895 TCACCGGATTCTGGGTTTTG
1 TCACCGGAATCTGGGTTTTG
10139915 TCACCGGAATCTGGGTTTT
1 TCACCGGAATCTGGGTTTT
10139934 TTCGTTGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.21, G:0.28, T:0.38
Consensus pattern (20 bp):
TCACCGGAATCTGGGTTTTG
Found at i:10139956 original size:11 final size:11
Alignment explanation
Indices: 10139940--10139988 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
10139930 TTTTTTCGTT
10139940 GGAAGTTCATC
1 GGAAGTTCATC
*
10139951 GGAAGTTCGTC
1 GGAAGTTCATC
10139962 GGAAGTTCATC
1 GGAAGTTCATC
* *
10139973 GAAAGTTCACC
1 GGAAGTTCATC
10139984 GGAAG
1 GGAAG
10139989 ATCACCAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (11 bp):
GGAAGTTCATC
Found at i:10139959 original size:22 final size:22
Alignment explanation
Indices: 10139934--10139980 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
10139924 TCTGGGTTTT
* *
10139934 TTCGTTGGAAGTTCATCGGAAG
1 TTCGTCGGAAGTTCATCGAAAG
10139956 TTCGTCGGAAGTTCATCGAAAG
1 TTCGTCGGAAGTTCATCGAAAG
10139978 TTC
1 TTC
10139981 ACCGGAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (22 bp):
TTCGTCGGAAGTTCATCGAAAG
Found at i:10140823 original size:159 final size:159
Alignment explanation
Indices: 10140559--10140895 Score: 469
Period size: 159 Copynumber: 2.1 Consensus size: 159
10140549 AAGCATACGA
* *
10140559 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAAGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAG
* * * * * * *
10140624 AGGGGGACCTGACCAATCCCCAGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACAC
66 AGGGGGACCTGAACAATCCCCAGATTGCCCATCCCACCCCTCTAGCCGACTGAGCGCCCGCACAC
* *
10140689 TTGTTTCGTGGGTTGACTTAGGCATAAGG
131 TCGTTTCGTAGGTTGACTTAGGCATAAGG
* * *
10140718 AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAG
* * * * *
10140783 AGGGGGA-CTCGAACGATCCCCGGATTGCGCATCCCACCCCTCTAGCCGACTTAGCGCCCGCACG
66 AGGGGGACCT-GAACAATCCCCAGATTGCCCATCCCACCCCTCTAGCCGACTGAGCGCCCGCACA
*
10140847 CTCGTTTCGTAGGTTGACTTAGGCATATGG
130 CTCGTTTCGTAGGTTGACTTAGGCATAAGG
*
10140877 AGTTTATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
10140896 CATACAAAGT
Statistics
Matches: 156, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 2 0.01
159 154 0.99
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAG
AGGGGGACCTGAACAATCCCCAGATTGCCCATCCCACCCCTCTAGCCGACTGAGCGCCCGCACAC
TCGTTTCGTAGGTTGACTTAGGCATAAGG
Found at i:10141806 original size:26 final size:26
Alignment explanation
Indices: 10141776--10141828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10141766 GTTGACTTAG
*
10141776 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
10141802 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10141828 G
1 G
10141829 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10142453 original size:902 final size:893
Alignment explanation
Indices: 10140705--10142913 Score: 3093
Period size: 902 Copynumber: 2.5 Consensus size: 893
10140695 CGTGGGTTGA
* * *
10140705 CTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAAG-CAGCAGGAT
* * * *
10140770 CGGCAGCACGCAGAGGGGGACTCGAACGATCCCCGGATTGCGCATCCCACCCCTCTAGCCGACTT
65 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGATTGCGCATCCCACCCCTCTGGCCGACTG
* *
10140835 AGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAGCATA
130 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
** * * *
10140900 CAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
195 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGG
* * * ** * * *
10140965 CCATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCATCGTCGAACCATCG-TCGGAGAGCCT
260 GCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCT-GGAGAACCT
* * ** * * *
10141029 GACTGGCGGCATTGGGCTTTTGGTGATCGGGGCGGCCGAGAGGGGAGTGTGCACACATGATGTGC
324 GACTGGCGGCATTGGGGTTTCGACGATCGGGG-GGGC-TG-GGGG-GTGTGCGCACATGATGTGC
*
10141094 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
385 GATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
10141159 CCCCCTTAAAGAACATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATG
450 CCCCCTTAAAGAACATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATG
* * * *
10141224 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
515 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATGTTTTTGT
**
10141289 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTTGAAAAAA
580 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGA-CAAAACTCCTTCCGAAAAAA
* * * * * *
10141354 TTTTAAGAAACCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTG
644 TCTAAAAAAACCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTG
*
10141419 CCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTAAATGCCATAAAAATGGCAT
709 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAATGCCATAAAAATGGCAT
*
10141484 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
774 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * **
10141549 ATCCTGCCTCTCCT-GCCGGCGTAGTGCTCGCCCATCCGTCCGCCCGCTCGTTTTGTCGGTTCG
839 ATCCCGCCTCT-CTAGCCGGCGTAGTGC-C-CCC--CCGT----CCGCTCCTTCCGTCGGTTCG
* * *
10141612 CTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAGACCAGACCGAGGGTTATAGCAACAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA-AGCAGCAGGAT
* * ** *
10141677 CGGCAGCACGCAGAGGGGGACCCGATCGAACCCCGGGTTAAGCATCCCACCCCTCTGGCCGGCTG
65 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGATTGCGCATCCCACCCCTCTGGCCGACTG
* * *
10141742 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATA
130 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATA
* * *
10141807 CGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGG
195 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGG
* * * *
10141872 GCATGTGTTGGTACCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGAACCTG
260 GCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCTGGAGAACCTG
* * *
10141937 ACTGGCGGCATTGGGGTTCCAACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTACGATGG
325 ACTGGCGGCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
10142002 GTGCTGGTACTTGGCCCCTATATTGTCCCCTTATCCCTCATCAAATCTCGAGAACTCACA-CCCC
390 GTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
10142066 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGAC
455 TTAAAGAACATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGAC
*
10142131 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATGTTTTTGTGCATG
520 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATGTTTTTGTGCATG
*
10142196 CCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGA-ATAAACTCCTTCCGAAAAAATCTA
585 CCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACA-AAACTCCTTCCGAAAAAATCTA
* *
10142260 AAAAAA-TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
648 AAAAAACCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCA
*
10142324 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTG
712 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AATGCCATAAAAATGGCATTG
* * * * *
10142388 GCACGCAGAAATGTGAAGATGTGCCTAAACTCACCTACCACCCTATGGATCCATGGCTTGCGCAT
776 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
10142453 CCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCCGCTCCTTCCGTCGGTTGG
841 CCCGCCTCTCTAGCCGGCGTAGTGCCCCCCCGTCCGCTCCTTCCGTCGGTTCG
* * * * * * * * *
10142506 CTTAGGCATACGAAGTTAATTCCTAGTCTAAGATTGGACCGGACCAAAGGTTACGGTAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA-AGCAGCAGGAT
* * * * *
10142571 CGACAGCACGCAGA-GAGGACCCGATCTATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGACTG
65 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGATTGCGCATCCCACCCCTCTGGCCGACTG
* *
10142635 AGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAGCAT
130 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT-AAGCAT
*
10142700 ACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCG
194 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCG
* * * ** * * *
10142765 GGCATGTGCTGGTGCCACATTTTTCTTTGTTGGCGTGCCATCACTGGAGCATCACCGGAGAACCT
259 GGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCTGGAGAACCT
* * *
10142830 GACCGGTGGCATTGGGGTTTCGACGATCGGGTGGG-TCGGAGGGGTGTGCGCACATGATGTGCGA
324 GACTGGCGGCATTGGGGTTTCGACGATCGGGGGGGCT-GG-GGGGTGTGCGCACATGATGTGCGA
10142894 TGGGTGCTGGTACTTGGCCC
387 TGGGTGCTGGTACTTGGCCC
10142914 TTTATTTGAA
Statistics
Matches: 1155, Mismatches: 137, Indels: 32
0.87 0.10 0.02
Matches are distributed among these distances:
893 96 0.08
894 233 0.20
895 43 0.04
898 4 0.00
900 2 0.00
901 6 0.01
902 371 0.32
903 84 0.07
904 4 0.00
905 1 0.00
906 3 0.00
907 306 0.26
908 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (893 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAAGCAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGATTGCGCATCCCACCCCTCTGGCCGACTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCTGGAGAACCTGA
CTGGCGGCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAACATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATGTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAACTCCTTCCGAAAAAATCTAAAA
AAACCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAATGCCATAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTAGCCGGCGTAGTGCCCCCCCGTCCGCTCCTTCCGTCGGTTCG
Found at i:10142707 original size:27 final size:27
Alignment explanation
Indices: 10142669--10142721 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
10142659 GTTGACTTAG
10142669 GCATACGGAGTTCATTCCCAGTCTAAA
1 GCATACGGAGTTCATTCCCAGTCTAAA
10142696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10142722 GATTGGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCAGTCTAAA
Found at i:10144336 original size:26 final size:26
Alignment explanation
Indices: 10144306--10144358 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10144296 ATTGACTTAG
10144306 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10144332 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10144358 G
1 G
10144359 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10144723 original size:898 final size:900
Alignment explanation
Indices: 10142920--10148823 Score: 6525
Period size: 899 Copynumber: 6.6 Consensus size: 900
10142910 GCCCTTTATT
* * * * *
10142920 TGAATTTTTTTGTGCATTCCTACAAAAATACATGGATCACTTCTACCAACTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
10142985 CCTTCCGAAATAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* *
10143050 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
**
10143115 ATAAAAATGGCATTGGCACATA-AAATATGAAGATGTGCC-AAACCCACCTACCACCCTATCGAT
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * * * *
10143178 CCACGACTTGCGCATCCTGTCTCTC-GGTCGGCAT-A-G--TGCCCGCCTTGCCCACTCGTTTTG
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCC-CGCCCGCTCATTTCG
** **
10143238 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGACCGAGGGTTGC-AG
325 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGA-
* * * * *
10143302 CAGCAGGATCGACAGC-CACAGAGGGGGACCCGCCCGATCCCCGGCTTGCGCGTCCCGCCCCTCT
389 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
10143366 GGCCGGCTGAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
454 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
10143431 CTAAGCATACGAAGTTCATTCCCATTCCAAGATCGGACC-GAACCGAGGGTTGCAACAGCACATG
519 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGAA-CGAGGGTTACGACAGCACATG
* * * * *
10143495 CTGGGCT-CGAGCATGTCCTGGTGCCGCATTTCTCTTCGTTGGGGCACCATTGCCGGAGCATCGT
583 CTGGGCTCCGCGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGT
* * * *
10143559 CGGAGAACTTGACCTGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATG
648 CGAAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* * *
10143623 ATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
713 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
10143688 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATTAAAGTGTCT
778 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
10143753 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGC
843 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
10143811 TGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * *
10143875 CCTTCCGAAAAAATTTTAAAAAATCACGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAA
66 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* *
10143940 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
10144005 AGAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGAT
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
10144070 CCACAGCTTGCGCATCCCGTCTCTCTTGCCGACGTAATGCCTACCCGCCCGCCCGCTCATTTCAT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCGCTCATTTCGT
** *
10144135 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCGATA
326 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGATA
* * * * * *
10144200 GCAAGATCGACAGCACGTAGAGGGGAACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTTG
391 GCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * **
10144265 CCGGTTGAGCGCTCGCACGCTCGTTTCATGAATTGACTTAGGCATACGGAGTTCATTCCCAGTCT
456 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
10144330 AAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACCAGAATGAGGGTTACGACAGCACATGCTG
521 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGACAGCACATGCTG
* *
10144395 GGCTCCG-GCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCCGAGCATCGTCGA
586 GGCTCCGCGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGA
* * * * *
10144459 AGAACCTGACCGGCAGCATTAGGGTTCTGGTGATTGGAGGGGCCGGGGGGTGTGCGCACATGATG
651 AGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * * * *
10144524 TGCGATGGGTGCTCGTAGTTAGCCCTTATATTGGCCCCCTATCCCTTATCAATCCTCGACAACTC
716 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
10144589 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAA
781 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
10144654 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGT
846 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
10144709 TGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
10144774 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATTGTGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* * *
10144838 ACGTGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
10144903 ATAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGAT
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * ** * ** *
10144968 CCACGGCTTGCGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCTGCCCGCTTGCTCATTTTGT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCGCTCATTTCGT
** * * *
10145033 CGGTTGGCTTAGGCATATAGAGTTCATTCCCA-TCTAAGATTGGACTGGATCGAGGGTTGCTG-C
326 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC-GAT
** * * ** * ***
10145096 AGCAGGATCGGTAGCACGCAGAGGGGGACCCGACTGATCCCTGACTTATGGATCCAAACCCTCTG
390 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
10145161 GCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
455 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * ** * * * * * **
10145226 TAAG-ATAGGGCCAGACCGAGGGTTGCTGCAG--TAGGATCGACAGCACACAAAGGGGGACACGA
520 TAAGCATA-CG-AAGTTC-A---TT-C-CCAGTCTAAGATCGA-A-C-CAGAACGAGGGTTACGA
** * * * * * ** *
10145288 TTG-ATCCTTGACTTGCGCATCCCGCCCCTCTGGCGACTGAGCT-CTCGCA-TGCTCGTTTCGTA
574 CAGCA--CATG-C-TGGGC-T-CCG-CGC-ATGTC--CTG-G-TGC-CGCATTTTTC--TTCGTC
* * * * * * ** * ***
10145350 GGTTGACTTAGGCAT--ACAGAGTTCAT--TCCCAATCTAAGCAT-A-CGAAGTTCATTCCCAG-
624 GG--GGC--A-CCATCGCCAGAG--CATCGT-CGAA--GAA-CCTGACCGGCG-GCATT-AGGGT
*** * *** * * * * * * * *
10145408 T-CTAAGATCAGACCGGACTGAGGGT-TGCGGCAGCA-CATGCTGGGCTCGG-GCAT-GTACTGG
676 TCCGGCGATCGGGGGGGCCGGGGGGTGTGC-GCA-CATGATG-TGCGATGGGTGC-TGGTACTTG
* * * * * * **
10145468 TGCCGCATTTTTCATCGTCGGGGCACC-AT-CGTCGGAGT--ATCGTCGGAGAAC-CTGA----C
737 -GCC-C--TTAT-AT--T--GGCCCCCTATCCCTC--A-TCAAACCTC-GAGAACTCACACCCCC
*** ** * * * * * ** ** ** * *
10145524 -TGGCG-GCA-TTG-G-GGTTCCGACG-AT-CAG--GGGGGCC---GGAG-GGGTG---TGCGCA
789 TTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * * ** **
10145573 CA-TGATGTGC-GATGGGT------A-CTGGT--ACTT-G-GCCCTTTATT
853 CACT-TTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAG-TTTTTAGC
* * *
10145611 TGAATTTTTTTGTGCATTCCTACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
10145676 CCTTCCGAAATAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
66 CCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* * *
10145740 AACAAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGC
130 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
10145805 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
195 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * * * *
10145870 TCCACGACTTGCGCATCCTGTCTCTCTGGCCGGCAT-A-G--TGCCCACCTGTCCACTCATTTTG
260 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCGCTCATTTCG
** * * * *
10145931 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGAACAGCGGGTTAC-AG
325 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGA-
* * *
10145995 TAGCAGGATCGACAGCACGTAGAGGGGGACTC-ATCTGATCCCCGGCTTGCGCGTCCCGCCCCTC
389 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CTGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
10146059 TGGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTA
453 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-A
* * * * * *
10146124 GTCTAAGCATACGAAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCACAT
517 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGACAGCACAT
* * *
10146189 GCTGGGC-CCGGGCATGTCCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCAGAGCATC
582 GCTGGGCTCCGCGCATGTCCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCAGAGCATC
* * * * ** * *
10146252 GACGGAGAACTTGACCGGTGGCATTAGGGTTCCGGTAATCGGGGGGGCTGGGGGGGTGTGCACAC
646 GTCGAAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCAC
* * *
10146317 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCACATCAAACCTCGA
710 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
10146382 TAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
775 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
** * * * *
10146447 TCAAAAATGGGGACAATTTTTTCAAATGGTCACTAAAT-TTGTACACTTTGTGTTTTTAGC
840 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
10146507 TGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * **
10146572 CTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
*
10146637 ACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
10146702 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGAT
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
10146767 CCACGGCTTGCACATCCCGTCTCTCTGGTCGACGT-A-G--TGCCCGCCCGCCCGCTCGTTTCGT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCGCTCATTTCGT
* * ** ** * * * *
10146828 CGATTGGCTTAGGCATACAGAGTTCATTCTGAGTCTAAGATCAGACCAGACCGCGGGTTGTGGTA
326 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGATA
* * * * * * *
10146893 GCAAGATTGGCAGCACGCAGAGGGGGACCTGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGG
391 GCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
10146958 CCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGTACTTCATTCCCAGTCT
456 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * **
10147023 AAGCATACGAAGTTCATTCCCAGTCGAAGATC-AGACCAGACCGA-GGTTACGGTAGCACATGCT
521 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACCAGAACGAGGGTTACGACAGCACATGCT
* * * * ** * * * *
10147086 AGGCT-CGGGCACGTGCTGGTGCCATATTTTTCTCCGTCGGGGCACCATCGTCGGAGCATCGCCG
585 GGGCTCCGCGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCG
* * * * *
10147150 GAGAACCTAACCGACGGCATTAGGGTTTCGGCGATCGGGGGGGCTGGGGGGATGTGCGCACATGA
650 AAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGG-TGTGCGCACATGA
* * * *
10147215 TGTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCTTGTCCCTCATCAAACCTCGAGAAC
714 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
10147280 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGTCATTAAAGTGTTTG
779 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
10147345 AAATGGGGACACTTTTTTCTAATGGTCACAAAATTTTGTACACTTCGAGTTTTTGGC
844 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
10147402 TGAAATGTTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAATACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * *
10147467 CTTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGAGTAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
*
10147532 ACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
10147597 AAAAAAATGGCATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAA
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
10147662 CCACGGCTTGCACATCCCGTCTCTCTGGTCGACGTAGTGCCTGCCCGCCCGTCCGCTCGTTTCGT
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCGCTCATTTCGT
* * ** * * *
10147727 CGATTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCGACA
326 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGATA
* * * *
10147792 GCAGGATCGACAGCATGCAGAGGGGGACCCG-GTCGATCCTCC-ACTTGCGCATCCCGCCCGTCT
391 GCAGGATCGACAGCACGCAGAGGGGGACCCGACT-GATCC-CCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
10147855 GGTCGGTTAAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCTGA
454 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * ** *
10147920 CTAATCATA-TAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGTACATG
519 CTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGACAGCACATG
* * * *
10147984 CTAGGCT-CGTGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGCCAGAGCATCG-
583 CTGGGCTCCGCGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGT
* * * *
10148047 CCAGAGAACCTGACCGGCGGCATTACGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGGACAT
648 CGA-AGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* *
10148112 GAAGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
712 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
10148177 ACTCACACCCCCTTAAGGAGCATTTGACATTTTACAAGTTTGCTGCCCGTAGCCATTAAAGTGTC
777 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
10148242 TGAAATGGGGACAAC-TTTTTCAAATGGTCACAAACA-CTTGTACACTTTGAGTTTTTAGC
842 TGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAA-ATCTTGTACACTTCGAGTTTTTAGC
*
10148301 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACT
1 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
10148366 TCTTCCGTAAAAATTTTAAAAAATCTCGAACAGCAAAATGTTTTGAAAATCATGAAAAATAGAAA
66 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
*
10148431 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
10148496 ATAAAAGTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
196 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * ** * * * **
10148561 CCATGACTTATGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGCTCA-TTCTG
261 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCGCTCATTTC-G
* * * * *
10148625 TCGGTTGGTTTA-GCAATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGG
325 TCGGTTGGCTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGA
* * * * *
10148689 TAGTAGGATCGACAGCACGTAGAGGGGGACCCGATTGATCCCCAGCTTGCGCATCCTGCCCCTCT
389 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
10148754 GGCCGGTTGAGCGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGT
454 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
10148819 CTAAG
519 CTAAG
10148824 ATCCGACTGG
Statistics
Matches: 4196, Mismatches: 653, Indels: 320
0.81 0.13 0.06
Matches are distributed among these distances:
866 1 0.00
867 10 0.00
868 7 0.00
869 3 0.00
871 2 0.00
872 4 0.00
873 5 0.00
874 12 0.00
875 30 0.01
876 24 0.01
877 12 0.00
878 4 0.00
880 10 0.00
881 4 0.00
882 5 0.00
883 5 0.00
884 1 0.00
885 3 0.00
886 1 0.00
887 15 0.00
888 3 0.00
890 179 0.04
891 38 0.01
892 48 0.01
893 24 0.01
894 272 0.06
895 345 0.08
896 545 0.13
897 389 0.09
898 460 0.11
899 976 0.23
900 251 0.06
901 12 0.00
902 114 0.03
903 181 0.04
904 5 0.00
905 17 0.00
906 4 0.00
907 1 0.00
908 4 0.00
909 1 0.00
910 3 0.00
911 3 0.00
912 13 0.00
913 3 0.00
915 6 0.00
916 7 0.00
917 5 0.00
918 7 0.00
919 4 0.00
920 2 0.00
921 7 0.00
922 11 0.00
923 36 0.01
924 23 0.01
925 7 0.00
926 2 0.00
927 4 0.00
928 2 0.00
930 3 0.00
931 9 0.00
932 11 0.00
933 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCTGCCCGCCCGCCCGCTCATTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGATA
GCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGAACGAGGGTTACGACAGCACATGCTG
GGCTCCGCGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGA
AGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
Found at i:10145317 original size:159 final size:157
Alignment explanation
Indices: 10145034--10145387 Score: 438
Period size: 158 Copynumber: 2.2 Consensus size: 157
10145024 TCATTTTGTC
* * * ** *
10145034 GGTTGGCTTAGGCATATAGAGTTCATTCCCATCTAAGATTGGACTGGATCGAGGGTTGCTGCAGC
1 GGTTGACTTAGGCATACAGAGTTCATTCCCATCTAAGATAGGACCAGACCGAGGGTTGCTGCAGC
** * * * * *
10145099 AGGATCGGTAGCACGCAGAGGGGGACCCGACTGATCCCTGACTTATGGATCCAAACCCTCTGGCC
66 AGGATCGACAGCACACAAAGGGGGACACGACTGATCCCTGACTTACGCATCCAAACCCTCTGG-C
* *
10145164 GGCTGAGCGCCCGCATGCTCGTTTCATG
130 GACTGAGCGCCCGCATGCTCGTTTCATA
* *
10145192 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGGCCAGACCGAGGGTTGCTGCAG
1 GGTTGACTTAGGCATACAGAGTTCATTCCCA-TCTAAGATAGGACCAGACCGAGGGTTGCTGCAG
* * * * ***
10145257 TAGGATCGACAGCACACAAAGGGGGACACGATTGATCCTTGACTTGCGCATCCCGCCCCTCTGGC
65 CAGGATCGACAGCACACAAAGGGGGACACGACTGATCCCTGACTTACGCATCCAAACCCTCTGGC
* * *
10145322 GACTGAGCTCTCGCATGCTCGTTTCGTA
130 GACTGAGCGCCCGCATGCTCGTTTCATA
10145350 GGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
1 GGTTGACTTAGGCATACAGAGTTCATTCCC-ATCTAAG
10145388 CATACGAAGT
Statistics
Matches: 166, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 87 0.52
159 79 0.48
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GGTTGACTTAGGCATACAGAGTTCATTCCCATCTAAGATAGGACCAGACCGAGGGTTGCTGCAGC
AGGATCGACAGCACACAAAGGGGGACACGACTGATCCCTGACTTACGCATCCAAACCCTCTGGCG
ACTGAGCGCCCGCATGCTCGTTTCATA
Found at i:10145390 original size:26 final size:26
Alignment explanation
Indices: 10145361--10145413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10145351 GTTGACTTAG
10145361 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
*
10145387 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
10145413 G
1 G
10145414 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:10146141 original size:27 final size:26
Alignment explanation
Indices: 10146103--10146156 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
10146093 GTTGACTTAG
*
10146103 GCATACGGAGTTCATTCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
10146130 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10146156 G
1 G
10146157 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10149222 original size:406 final size:403
Alignment explanation
Indices: 10148464--10149229 Score: 1000
Period size: 406 Copynumber: 1.9 Consensus size: 403
10148454 TCACGTGAAG
* *** *
10148464 GCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCACGTAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGCACGCAGAAATATGAAG
* * * * * *
10148529 ATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTATGCATCTCGTCTCTCTGGCCGAC
66 ATGTGCCTAAACCCAACTACCACCCGATCGATCCACGACTTACGCATCCCATCTCTCTGGCCGAC
*** * *
10148594 GTAGTGCCCGCCCGCCCGTTCGCTCATTCTGTCGGTTGGTTTAGCAATATGGAGTTCATTCCCAG
131 GTAGTGCCCGCCCGCCCACCCGCTCATTCTGTCAGTTGGCTTAGCAATATGGAGTTCATTCCCAG
* * * * * *
10148659 TCTAAGATTGGACCGGACCAAGGGTTACGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGAT
196 TCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACGATCGACAGCACGCAGAGGGGGACCCGAT
* * * * **
10148724 TGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGGTCGTTTCGTGGGT
261 CGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGGTGAGCGCCCGCACACTCGTTTCGTGGGT
10148789 TGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCCGACTGGACCGAGGGTTGCAGCAGCAC
326 TGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCCGACTGGACCGAGGGTTGCAGCAGCAC
10148854 ATACTAGGCTCGA
391 ATACTAGGCTCGA
*
10148867 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGGA-GACAGAAATATGAA
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGCACG-CAGAAATATGAA
* * * *
10148931 GATGTGCCTAAACCCAACTACCACCCGATCGATCCACGGCTTGCGCATCCCATTTCTCTGGCCGG
65 GATGTGCCTAAACCCAACTACCACCCGATCGATCCACGACTTACGCATCCCATCTCTCTGGCCGA
* * *
10148996 TGTGGTGCCCGCACGCCCGCCCACCCGCTTATT-TCGTCAGTT-GCTTAGGC-ATATGGAGTTCA
130 CGTAGTG--C-C-CGCCCGCCCACCCGCTCATTCT-GTCAGTTGGCTTA-GCAATATGGAGTTCA
* * * ** * **
10149058 TTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACGATTGGTAGCACGCAGAGGGGG
189 TTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACGATCGACAGCACGCAGAGGGGG
* * * *
10149123 ACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTTTGGCCGGGTGAGTGCCCGCACACTCGTTT
254 ACCCGATCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGGTGAGCGCCCGCACACTCGTTT
*
10149188 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
319 CGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAG
10149230 CATACGGAGT
Statistics
Matches: 307, Mismatches: 49, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
402 1 0.00
403 116 0.38
405 1 0.00
406 165 0.54
407 24 0.08
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (403 bp):
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCAACTACCACCCGATCGATCCACGACTTACGCATCCCATCTCTCTGGCCGAC
GTAGTGCCCGCCCGCCCACCCGCTCATTCTGTCAGTTGGCTTAGCAATATGGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACGATCGACAGCACGCAGAGGGGGACCCGAT
CGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGGTGAGCGCCCGCACACTCGTTTCGTGGGT
TGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCCGACTGGACCGAGGGTTGCAGCAGCAC
ATACTAGGCTCGA
Found at i:10149239 original size:26 final size:26
Alignment explanation
Indices: 10149203--10149253 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
10149193 GTTGACTTAG
10149203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10149229 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
10149254 TGATCAGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10149934 original size:26 final size:26
Alignment explanation
Indices: 10149898--10149949 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
10149888 TTGACTTAGA
10149898 CATACGGAGTTCATTCCCAGTATAAG
1 CATACGGAGTTCATTCCCAGTATAAG
*
10149924 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTATAAG
10149950 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAG
Found at i:10151862 original size:26 final size:26
Alignment explanation
Indices: 10151833--10151883 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10151823 GTTGACTTAG
10151833 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10151859 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
10151884 TGATTGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10152577 original size:26 final size:26
Alignment explanation
Indices: 10152526--10152577 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10152516 TTGACTTAGA
*
10152526 CATACGGAGTTCATTCCCGGTATAAG
1 CATACGGAGTTCATTCCCAGTATAAG
*
10152552 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTATAAG
10152578 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAG
Found at i:10152747 original size:26 final size:25
Alignment explanation
Indices: 10152712--10152768 Score: 89
Period size: 26 Copynumber: 2.3 Consensus size: 25
10152702 TGACTTAGGC
*
10152712 ATATAGAGTTCATTCCCAGTCTAAGT
1 ATATGGAGTTCATTCCCAGTCTAA-T
10152738 ATATGGAGTTCATTCCCAGTCTAAT
1 ATATGGAGTTCATTCCCAGTCTAAT
10152763 AT-TGGA
1 ATATGGA
10152769 CCGGACCGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (25 bp):
ATATGGAGTTCATTCCCAGTCTAAT
Found at i:10152781 original size:185 final size:185
Alignment explanation
Indices: 10152451--10152783 Score: 436
Period size: 185 Copynumber: 1.8 Consensus size: 185
10152441 AGGGACCCGG
* * * *
10152451 TCGATCACCGGCTTGCGCATCTCGACCCTCTGGTCGATTGAGCACTCGCACACTCGTTTCGTAGC
1 TCGATCACCGGCTTGCGCATCTCCACCCTCTAGCCGATTGAGCACCCGCACACTCGTTTCGTAGC
* *
10152516 TTGACTTAGACATACGGAGTTCATTCCCGGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGACATACAGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
10152581 AGACTAGATCGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAAAAGAGGACCCAA
131 AGACCAGACCGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAAAAGAGGACCCAA
* * * *
10152636 TCGATCCCCGGCTTGCGCATC-CCACCCGTCTAGCC-AGTTGAGCACCCGTACGCTCGTTTCGTG
1 TCGATCACCGGCTTGCGCATCTCCACCC-TCTAGCCGA-TTGAGCACCCGCACACTCGTTTCGTA
* * * * * * *
10152699 GGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGTATATGGAGTTCATTCCCAGTCTAATA
64 GCTTGACTTAGACATACAGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGA
** *
10152764 TTGGACCGGACCGAGGGTTG
129 TCAGACCAGACCGAGGGTTG
10152784 CAGCAGCACA
Statistics
Matches: 124, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
184 6 0.05
185 118 0.95
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (185 bp):
TCGATCACCGGCTTGCGCATCTCCACCCTCTAGCCGATTGAGCACCCGCACACTCGTTTCGTAGC
TTGACTTAGACATACAGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAAAAGAGGACCCAA
Found at i:10153639 original size:26 final size:26
Alignment explanation
Indices: 10153603--10153655 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10153593 GTTGACTTAG
*
10153603 GCATAGGGAGTTTATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
* *
10153629 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
10153655 G
1 G
10153656 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:10154338 original size:26 final size:26
Alignment explanation
Indices: 10154309--10154360 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10154299 TTGACTTAGA
*
10154309 CATACGGAGTTTATTCCCAGTATAAG
1 CATACGGAGTTCATTCCCAGTATAAG
* *
10154335 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTATAAG
10154361 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAG
Found at i:10154538 original size:185 final size:185
Alignment explanation
Indices: 10154226--10154566 Score: 470
Period size: 185 Copynumber: 1.8 Consensus size: 185
10154216 ACACAGAGGG
10154226 GGACCCGGTCGATCACCGGCTTACGCATCCCGACCCTCTGGCCGATTGAGCACCTGCACGCTCGT
1 GGACCCGGTCGATCACCGGCTTACGCATCCCGACCCTCTGGCCGATTGAGCACCTGCACGCTCGT
* * * * *
10154291 TTCGTAGGTTGACTTAGACATACGGAGTTTATTCCCAGTATAAGCATATGGAGTTCATTCCCAGT
66 TTCGTAGGTTGACCTAGACATACAGAGTTCATTCCCACTATAAGCATACGGAGTTCATTCCCAGT
*
10154356 CTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGTAGCATGCAAAAGA
131 CTAAGATCAGACCAAACCGAGGGTTGTGGTAGCAGGATCGGTAGCATGCAAAAGA
* * * *
10154411 GGACCCGGTCGATCCCCGGCTTACGCATCTCG-CCCGTCTGGCC-AGTTGAGCGCCTGTACGCTC
1 GGACCCGGTCGATCACCGGCTTACGCATCCCGACCC-TCTGGCCGA-TTGAGCACCTGCACGCTC
* ** * * * *
10154474 GTTTCGTGGGTTGACCTAGGTATATAGAGTTCATTCCTACTCTAAGGATACGGAGTTCATTCCCA
64 GTTTCGTAGGTTGACCTAGACATACAGAGTTCATTCCCACTATAAGCATACGGAGTTCATTCCCA
* **
10154539 GTCTAATATTGGACCAAACCGAGGGTTG
129 GTCTAAGATCAGACCAAACCGAGGGTTG
10154567 CAGCAGTACA
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
184 4 0.03
185 130 0.97
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (185 bp):
GGACCCGGTCGATCACCGGCTTACGCATCCCGACCCTCTGGCCGATTGAGCACCTGCACGCTCGT
TTCGTAGGTTGACCTAGACATACAGAGTTCATTCCCACTATAAGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAAACCGAGGGTTGTGGTAGCAGGATCGGTAGCATGCAAAAGA
Found at i:10154588 original size:890 final size:889
Alignment explanation
Indices: 10151148--10160468 Score: 9527
Period size: 890 Copynumber: 10.4 Consensus size: 889
10151138 GACGATTGGG
* *
10151148 GTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
10151213 CACA-CCCCTTAAAGAGCATTTGGGAATTTACAGGTTTGCAGCCAATAGCCATTAAAGTATCTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* * * *
10151277 AATGGGGACACGTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTGT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * ** * ***
10151342 TTGTGCATGTGAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCCAAAACTCTTTTTGAA
196 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * *
10151407 AAAATTTTAAAAAATCCAGAACCGTAAAAGGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
261 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * **
10151472 CTTGCCATGAAACTTCATGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACA
326 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** * * * ** **
10151537 GCATTGGCACAAAGAAATATGAAGATGT-GCCTAAACCCAAC-TAC-CA-CCCGATCGATCCATG
391 GCATTGGCACACAGAAAT-GGACCAGGTCG-AT-CA-CCGGCTTACGCATCCCGA-CCCT-C-TG
* * * * * * * * **
10151598 GC--CTGCGCATCCCGTCTCTCTGGACGGCGT-GG-TGCCCGCCTACCAGCCCGCCCGCTCGTTT
449 GCGATTGAGCA-CCTG-CCCGCTCGTC-TCGTAGGCTG-CCG--T---AG-CCATCCG-TCGTTT
* ** * * ** * * *
10151659 CGTCGGATGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAAATCATACCGGTCCGAAGGTTGCG
503 CTTC--ACAG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * *
10151724 GCAGCAGGATCGGCAGCACACAGAGGAGGACCCGATCGATCCTCGGCTTGCGCAACCCGCCCCTT
565 GCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
10151789 TGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
630 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *** * * *
10151854 TCTAAGCATACGGAGTTCATTCCCAGTCTATGATTGAATTGGACTGAGGGTTGCGGTAGCACATA
695 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
*
10151919 CTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--C
760 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* *
10151973 GGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACACGAT
825 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
10152038 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10152103 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTGAAGTGTCTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* * *
10152168 AAT-GGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTGGCTAAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
10152232 TTTTGCATGCCAAAAAATAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-T--AA
196 TTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* ** **
10152294 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCG
260 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
10152359 TCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAAT
325 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
10152424 GGCATTGGCACACAGAGAGGGACCCGGTCGATCACCGGCTTGCGCATCTCGACCCTCTGGTCGAT
390 GGCATTGGCACACAGAAATGGACCAGGTCGATCACCGGCTTACGCATCCCGACCCTCTGG-CGAT
* * * * * * * ** * * *
10152489 TGAGCA-CTCGCACACTCGTTTCGTA-GCTTGACTTAGACATACGGAG-TTCATTCCCGGTATAA
454 TGAGCACCT-GCCCGCTCGTCTCGTAGGC-TGCCGTAGCCATCCGTCGTTTC-TTCACAGT-TAG
* * * * *
10152551 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTGTGGTAGCAGGATCGGTA
515 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * * * * * *
10152616 GCACGCAAAAGAGGACCCAATCGATCCCCGGCTTGCGCATCCCACCCGTCTAGCCAGTTGAGCAC
580 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* ** * *
10152681 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGTATATGGAG
645 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
10152746 TTCATTCCCAGTCTAATATTGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATG
710 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
10152811 TGCTAGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CTGGAGAACCTGGCCG
775 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCG
* * *
10152875 ACAGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
839 ACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGAT
* *
10152928 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10152993 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* * * *
10153058 AATGGGGACGCTTTCTTCAAATGGACACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * * *
10153123 TTTTTGCATGCCAATAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCTTTTCAA
195 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* *
10153188 AAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTAAAAAATCGTGAAAAATAGAAAACGAGTCG
260 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
10153253 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAAT
325 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* ** * * * * * *
10153318 GGCACTGGCATGCAGAAATATGA--AGGT-G-T----GCCTAAACCCA-CCTACTACCCTAT--C
390 GGCATTGGCACACAGAAAT-GGACCAGGTCGATCACCGGCT-TACGCATCC--CGACCCTCTGGC
* *** * * * * * *
10153372 GATCGACGGCTTGTGCATC-C-CGTCTCTTTGGCCGGCGTAGTGCCCACCCGCTCGTTT-TGTCA
451 GATTGA--GCACCTGC-CCGCTCGTCTCGTAGGCTGCCGTA--G-CCATCCG-TCGTTTCT-TCA
* * ** *
10153434 GATGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAAC
508 CA--G-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * *
10153499 AAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGCCTTGCACATCCCGCCCCTCTGGCC
570 AGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
10153564 GGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTTATTCCCAGTCTAA
635 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
10153629 GCATATGGAGTTCATTCCTAGTCTAAGATCGAACCAGTCCAAGGGCTGCGGTAGCAAATGCTGGG
700 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
10153694 CTCGGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATTGCCTGACCATCATCGGAGA
765 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
10153759 ACCTAACCGATGGCATTGGGGTTCCGACGATCGGGGGGCCGGGAGGTGTGCGCACATGAT
830 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
10153819 GTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
10153884 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* *
10153949 AAT-GGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
10154013 TTATGCATGCCAA-AAAATATACAAGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTTCCAA
196 TTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* ** *
10154077 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
260 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
10154142 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAAT
325 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** *
10154207 GGCATTGGCACACAGAGGGGGACCCGGTCGATCACCGGCTTACGCATCCCGACCCTCTGGCCGAT
390 GGCATTGGCACACAGAAATGGACCAGGTCGATCACCGGCTTACGCATCCCGACCCTCTGG-CGAT
* * * * * * * ** * * *
10154272 TGAGCACCTGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTTATTCCCAGTATAAGCA
454 TGAGCACCTGCCCGCTCGTCTCGTAGGCTGCCGTAGCCATCCGTCGTTTCTTCACAGT-TAGGCA
* * * *
10154337 TATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGTAGCA
518 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCA
* * * * * * * * * * *
10154402 TGCAAAAGAGGACCCGGTCGATCCCCGGCTTACGCATCTCGCCCGTCTGGCCAGTTGAGCGCCTG
583 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * ** * * *
10154467 TACGCTCGTTTCGTGGGTTGACCTAGGTATATAGAGTTCATTCCTACTCTAAGGATACGGAGTTC
648 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
10154532 ATTCCCAGTCTAATATTGGACCAAACCGAGGGTTGCAGCAGTACATGCTGGGCTCGGGCATGTGC
713 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * * *
10154597 TAGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CTGGAGAACCTGGCTGACG
778 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACG
* *
10154661 GCATTGGGGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGAT
842 GCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGAT
* *
10154711 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCCAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
10154776 CACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
** * *
10154841 AATGGGGATGCTTTCTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
10154906 TT-TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACT-CTTTC-GA
196 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * *
10154967 AAAATTTT-AAAAATCCCGAACTGT-AAAAGTTTCAAAAAATCGTGAAAAATAGAAATCGAGTTG
261 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCG
* *
10155030 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACTGAATGTACCAGCCATAAAAA
325 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAAAA
** * ** * ** * ** * * **
10155095 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTTAAACCACCTACTACCCTAT--CGATCGAC-
389 TGGCATTGGCACACAGAAAT-GGACCAGGT-CGAT-CACCGGCT--TACGC-ATCCCGACCCTCT
* * * * * *
10155157 GGC--TTGCGCA--T-CCCG-TC-TCTC-TA-GCTGGCATAGTGCCCACCCGCTCGTTTCGTCAG
448 GGCGATTGAGCACCTGCCCGCTCGTCTCGTAGGCTGCCGTA--G-CCATCCG-TCGTTTCTTCAC
* * * **
10155213 ATGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCA
509 A--G-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
* * * * *
10155278 AGATCTGTAGCACGCAGAGGGGGACCC-ACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCG
571 GGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
10155342 ACTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAG
636 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
10155407 CATACGGAGTTTATTCCTAGTCTAAGATCGGACCGGTCCGAGGGCTGCGGCAGCAGATGCTGGGC
701 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
10155472 TCGGGTATGTGTTGGTGCCGTATTTTTCTTCGACGGGGCACCATCGTCGGATCATCGCCGGAGAA
766 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * *
10155537 CCTGACCGACGGCATTAGGGTTCCAACAATCAGGGGGGCCGGGGGGTGTGCGCACATGAT
831 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
10155597 GTGCGATGGGTTCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
10155662 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* * *
10155727 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGTGTCTTTAGCTGAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * **
10155792 TTGTGCATGCCAAGAAAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAA
196 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * * * *
10155857 AAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATCAAAAATAGAAAACGTGTCGT
261 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
10155922 CTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCACAAAAATG
326 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** * *
10155987 GCATTGGCAGGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
391 GCATTGGC------ACACA-GAA-ATG------GA-CCAGGT------CGATC-A--C-CGGCTT
** * * * * *
10156052 ACGCATCCCTTCTCTCTGGCCGATGTAGTGC-CC-CCCCGCACGTCT-GCT-TGC--CCGT--CC
431 ACGCATCCCGACCCTCTGG-CGAT-T-GAGCACCTGCCCGCTCGTCTCG-TAGGCTGCCGTAGCC
* * *** * * *
10156109 A--C-TCATTTCGTCGGTTGGTTAGGCATACGGAGTTCATTTCTAGTCTAAGATCAGACC-GAAC
492 ATCCGTCGTTTCTTC--ACAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-AC
* * * * * * *
10156170 TC-AGGGTTGCGACAGCAGGATTGGTAGCACGTAAAGGGGGACCCGACCGATCCCGGGCTTGCGT
554 -CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
** * * * * *
10156234 ATCCCTTCCTTCTGGCTGGCTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGA
618 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
10156299 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTG
683 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * **
10156364 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGAATTTTTCTTCACCGGGGCACCATCGT
748 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * *
10156429 CGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGAGGCCGGGGGGTT
813 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-T
10156494 GTGCGCACATGAT
877 GTGCGCACATGAT
* *
10156507 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
10156572 CAGACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGTCAGTAACCATTAAAGTGTTTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* * * *
10156637 AATGGGGACAGTTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTGT
131 AATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* **** *
10156702 TTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTGTGGAGTTTGGGGCCAAAACTCCTTCCGA
195 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
10156767 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAGT-GTGAAAAATAGAAAACGAGTC
260 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA-TCGTGAAAAATAGAAAACGAGTC
* * * *
10156831 ATCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
324 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** ** * * * * * * * *
10156896 TGGCATTGGCATGCAGAAATATA-AAGATGT-GCCTAAACCGACCTAC-CACCCTATCGATCCAC
389 TGGCATTGGCACACAGAAATGGACCAG--GTCG-AT-CACCGGCTTACGCATCC---CGACCCTC
* * * * * * * ** *
10156958 -GGC--TTGCGCATCCCGTCTCTCTGGCCGACGTA-G-TGCCCGCCGCC-TGC-TCGTTT-TGTC
447 TGGCGATTGAGCA-CCTG-CCCGCTCGTC-TCGTAGGCTG-CCGTAGCCATCCGTCGTTTCT-TC
* * * * * * **
10157015 AGATGGATTAGGCATACAGAGTTCATTCCCAGTATAAGATTGGACCAGACTGA-TGTTGCGAAAG
507 ACA--G-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* ** * * *
10157079 CAGAATCAATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGC
569 CAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
*
10157144 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
634 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
10157209 AGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGG
699 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * **
10157274 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGAACCATCACCGGAGCATCGTCGGAG
764 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
10157339 AACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
829 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGAT
* * *
10157401 ATGCCG-TGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAAC
1 GTG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
10157465 TCA-AACCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
65 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
*
10157529 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTT
130 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
10157594 TTTATGCATGCCAACAAAAATAAAACGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
195 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* ** * *
10157659 AAAAATTTAAAAAAATCCCGAACCGCGAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCG
260 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
10157724 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGTCATAAAAAT
325 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * ** * * * ** * * * *
10157789 GGCATTGGCATGCAAAAATATGAAGATGT-GCCTAAACCCACCTAC-CACCCTATCGATCCAC-G
390 GGCATTGGCACACAGAAAT-GGACCAGGTCG-AT-CACCGGCTTACGCATCC---CGACCCTCTG
* * * * * ** **
10157851 GC--TTGTGCATCC--CCTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT
449 GCGATTGAGCA-CCTGCC-CGCTC--GTC-TCGTAG-G-CTG-CCG-TAG-CCATCCG-TCGTTT
* *** * * ** ** *
10157912 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-AAAATCGAACTGGATTGAGGGTTACG
503 CTTC--ACAG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * *
10157976 GCAGCAAGATCTGTAGGACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTC
565 GCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
10158041 TGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
630 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * ** * **
10158106 TCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAATTAGACCGAGGGTTACGATAGCACATG
695 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * ** *
10158171 CTGGGCTCGGGCATGTGTTGGTG-CTCATTTTTCTTTATCGGGGCACCATCGTCCGAGCATCGTC
760 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* ** * * *
10158235 GAAGAACCTGACCGGTGGCATCGGGGTTCCGGCGAT--------C---AGG-G-G-GC-C---A-
825 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
10158281 ----G-TGGGTGCTAGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10158341 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGTCATTAAAGTGATTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* *
10158406 AACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
10158471 TTGTGCATGCCAGCAAAAATACAAGGATCACGTCCACCACGTTTGAGACCAAAACTCCTTCCAAA
196 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* **
10158536 AAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
261 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
10158601 CTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATG
326 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * * * ** * * * *
10158666 GCATTGGCACATAGAAATATA-AAGAT-GAACCTAAACCCACCTAC-CACCCTATCGATCCACT-
391 GCATTGGCACACAGAAATGGACCAGGTCG-A--T-CACCGGCTTACGCATCC---CGACCCTCTG
* * * * *
10158727 GC--TT--GCACAT-CCCGTCTCTTTGGCCGACGTAGTGCCCGCCCG--CCCATCCGCTCGTTTC
449 GCGATTGAGCACCTGCCCG-CTC----GTC-TCGTAG-G-CTG-CCGTAGCCATCCG-TCGTTTC
* *** * ** * *
10158785 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGTGGGTTGTGG
504 TTC--ACAG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
** * * * * * * *
10158850 CAGCAGGATCGACAGGATGCAGAGGGGGACCCGATTGATCCCCGACTTGCGTATCCGGCCTCTCT
566 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* *
10158915 GGCTGGCTGAGCG-CCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAAT
631 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
10158978 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGTAGCACATGC
696 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGC
* * **
10159043 TGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
761 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCG
* * * *
10159108 GAAAACCTAATCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
826 GAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCC-GGGGGGTGTGCGCACATG
10159172 AT
888 AT
* ** * *
10159174 GTGTGATGGGTGCTCATACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACA
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10159239 CACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAATGTCTT-
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTG
*
10159303 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTT
130 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
10159368 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGTCCAAAACTCCTT-CAG
195 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA-
* * * *
10159432 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACAAGTC
259 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
10159497 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
324 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** * * * ** ** * *
10159562 TGGCATTGGCACACAGAAATATGAAGATGT-GCCTAAACCCACCAAC-CA-CCCTATCAATCCAC
389 TGGCATTGGCACACAGAAAT-GGACCAGGTCG-AT-CACCGGCTTACGCATCCCGA-C---CCTC
* * * * * ** ** *
10159624 -GGC--TTGCGCA--T-CCCG-TCACTTTGGCAGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTT
447 TGGCGATTGAGCACCTGCCCGCTC-GTCTCGTAGGC----TG-CCG-TAG-CCATCCG-TCGTTT
* *** *
10159682 CATCGGTTGCCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-G
503 CTTC-ACAG--TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * * *
10159746 GCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGATTGATCCCCGGCTTGTGCATCTCGCCCATC
565 GCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
10159811 TGGCCGACTGAGCGCCCGCGCGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAG
630 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
10159876 TCTAAGCATACAGAGTTCAGTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATG
695 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * **
10159941 CTCGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCACC
760 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * * *
10160006 GGAGAACCTAACCGACGGTATTGAGGTTCCAACGATCGGGGGG-CGGGGGGTGTGCGCACATGAT
825 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
10160070 GTTCGATGGATGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACT
1 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
10160135 CACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGA
66 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* * *
10160200 AATGGGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTT
131 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * ***
10160265 TTGTGCATGCAAAAAAAAATACAAAGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTTTGAA
196 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
** * * *
10160330 AAAATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAATGAGT-GC
261 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG-
* * * *
10160394 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTACGAATTTACAAGCCCTAAAAAT
325 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
10160459 GGCATTGGCA
390 GGCATTGGCA
10160469 TGCAAAAATA
Statistics
Matches: 7142, Mismatches: 1033, Indels: 506
0.82 0.12 0.06
Matches are distributed among these distances:
871 112 0.02
872 128 0.02
873 86 0.01
874 11 0.00
875 58 0.01
876 359 0.05
877 258 0.04
878 3 0.00
879 3 0.00
880 5 0.00
881 4 0.00
882 6 0.00
883 3 0.00
884 9 0.00
885 21 0.00
886 237 0.03
887 309 0.04
888 368 0.05
889 272 0.04
890 680 0.10
891 432 0.06
892 537 0.08
893 432 0.06
894 520 0.07
895 61 0.01
896 402 0.06
897 89 0.01
898 482 0.07
899 185 0.03
900 84 0.01
901 235 0.03
903 3 0.00
904 5 0.00
905 2 0.00
909 90 0.01
910 389 0.05
911 232 0.03
912 8 0.00
913 1 0.00
914 3 0.00
915 1 0.00
916 1 0.00
917 3 0.00
918 4 0.00
919 3 0.00
920 3 0.00
921 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACACAGAAATGGACCAGGTCGATCACCGGCTTACGCATCCCGACCCTCTGGCGATTG
AGCACCTGCCCGCTCGTCTCGTAGGCTGCCGTAGCCATCCGTCGTTTCTTCACAGTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
Found at i:10155416 original size:26 final size:26
Alignment explanation
Indices: 10155380--10155432 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10155370 GTTGACTTAG
*
10155380 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
10155406 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10155432 G
1 G
10155433 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10156320 original size:26 final size:26
Alignment explanation
Indices: 10156290--10156342 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10156280 GTTGACTTAG
10156290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10156316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10156342 G
1 G
10156343 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10157214 original size:26 final size:26
Alignment explanation
Indices: 10157184--10157236 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10157174 GTTGACTTAG
*
10157184 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
10157210 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
10157236 G
1 G
10157237 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:10158121 original size:26 final size:26
Alignment explanation
Indices: 10158085--10158137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10158075 GTTGACTTAG
10158085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10158111 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10158137 G
1 G
10158138 ATCGAATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10158992 original size:26 final size:26
Alignment explanation
Indices: 10158956--10159008 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10158946 GTTGACTTAG
10158956 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
10158982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10159008 G
1 G
10159009 ATCGGACCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10159891 original size:26 final size:26
Alignment explanation
Indices: 10159855--10159907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10159845 GTTGAATTAG
* *
10159855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
10159881 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
10159907 G
1 G
10159908 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:10160378 original size:896 final size:897
Alignment explanation
Indices: 10154334--10160652 Score: 7198
Period size: 898 Copynumber: 7.1 Consensus size: 897
10154324 CCCAGTATAA
* * * **
10154334 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGTA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGCAGCAGGATCGACA
* * * * * * * * *
10154399 GCATGCAAAAGAGGACCCGGTCGATCCCCGGCTTACGCATCTC-GCC-CGTCTGGCC-AGTTGAG
65 GCACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATC-CGGCCTC-TCTGGCCGA-CTGAG
* * ** * ** * * * *
10154461 CGCCTGTACGCTCGTTTCGTGGGTTGACCTAGGTATATAGAGTTCATTCCTACTCTAAGGATACG
127 CGCC-GCACGCTCATTTCGT-GGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
* * * * * * *
10154526 GAGTTCATTCCCAGTCTAATATTGGACCAAACCGAGGGTTGCAGCAGTACATGCTGGGCTCGGGC
190 GAGTTCAGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGC
* * * * * * **
10154591 ATGTGCTAGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGGC
255 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAAC
* * *** * * *
10154656 TGACGGCATTGGGGTTCTGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
320 CGACGGCATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGA
* * * *
10154721 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCCAGAACTCACACACCCT
385 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* **
10154786 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGATG
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACA
* *
10154851 CTTTCTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGC
515 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
10154915 CAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACT-CTTTCG-AAAAATTTT-A
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTAGAAAAAATTTTAA
* * * * *
10154976 AAAATCCCGAACTGT-AAAAGTTTCAAAAAATCGTGAAAAATAGAAATCGAGTTGTCTTGCCATG
645 AAAATCTCGAACCGTAAAAAGTTTC-AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
10155040 AAACTTCACGTGAAGGCTTAAGGGACCATTGTACTGAATGTACCAGCCATAAAAATGGCATTGGC
709 AAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
10155105 ATGCAGAAATATGAAGATGTGCCTTAAA-CCACCTACTACCCTATCGATCGACGGCTTGCGCATC
773 ACACAGAAATATGAAGATGTGCC-TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * *
10155169 CCGTCTCTCTAGCTGGCATAGT--------GCCCACCCGCTCGTTTCGTCAGATGGCTTAG
837 CCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * ** * ** * *
10155222 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCAAGATCTG-T
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGCAGCAGGATC-GAC
** * * *
10155286 AGCACGCAGAGGGGGACCC-ACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCG
64 AGCACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCCGGCCTCTCTGGCCGACTGAGCG
* * * * *
10155350 CCCGTACGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACGGA
129 -CCGCACGCTCATTTCGT-GGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGA
* * * *** * * * *
10155415 GTTTATTCCTAGTCTAAGATCGGACCGGTCCGAGGGCTGCGGCAGCAGATGCTGGGCTCGGGTAT
192 GTTCAGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCAT
* ** * * * * *
10155480 GTGTTGGTGCCGTATTTTTCTTCGACGGGGCACCATCGTCGGATCATCGCCGGAGAACCTGACCG
257 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAACCG
* * * *
10155545 ACGGCATT-AGGGTTCCAACAATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
322 ACGGCATTGA-GGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGAT
* * * *
10155608 TCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
386 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
10155673 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACAC
* * *
10155738 TTTTTTCAAATGGTCATAAAATCTTGTACACTTCGTGTCTTTAGCTGAATTTTTTTGTGCATGCC
516 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
10155803 AAGAAAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAAGTTTAA
581 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTT-TAGAAAAAATTTTAA
* ** * *
10155867 AAAATCTCGAACCGTAAAAAGTTTTAAAAATCATCAAAAATAGAAAACGTGTCGTCTTGCCATGA
645 AAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
10155932 AAGTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCAG
710 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * * * *
10155997 GTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCT
775 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * *
10156062 TCTCTCTGGCCGATGTAGTGCCCCCCCGCACGTCTGCTTGCCCGTCCACTCATTTCGTCGGTTGG
840 TCTCTTTGGCCGGCGTAGTGCCCGCCCG--C--C--C--GCCCG----CTCGTTTCATCGGTTGG
10156127 -TTAG
893 CTTAG
* * * * * * * **
10156131 GCATACGGAGTTCATTTCTAGTCTAAGATCAGACCGAACTC-AGGGTTGCGACAGCAGGATTGGT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-CGAGGGTTG-GGCAGCAGGATCGAC
* * ** * * * ** * *
10156195 AGCACGTAAAGGGGGACCCGACCGATCCCGGGCTTGCGTATCCCTTCCT-TCTGGCTGGCTGAGC
64 AGCACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCAT-CCGGCCTCTCTGGCCGACTGAGC
* * * * * * *
10156259 GCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
128 G-CCGCACGCTCATTTCGT-GGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAG
* * ** * *
10156324 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
191 AGTTCAGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCA
* ** ** * * *
10156389 TGTGCTGGTGCTGA-ATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGAC
256 TGTGCTGGTGC-CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAAC
* * * * * ** *
10156453 CGACGGCATTGGGGTTCCGACGATC-AGGAGGCCGGGGGGTTGTGCGCACATGATGTGCAATGGG
320 CGACGGCATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGA
* * * *
10156517 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAGACCCCTT
385 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
10156582 TAAAGAGCATTTGAGATTTTATAGGTTTGCCGTCAGTAACCATTAAAGTGTTTGAAATGGGGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACA
* * * *
10156647 GTTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTGTTTTGTGCATG
515 -CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* **** * **
10156712 CCAACAAAAGTACAAGGATCACGTCTGTGGAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
579 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTAGAAAAAATTTTA
* * * *
10156777 AAAAATCCCGAACCGTAAAAAGTTTCAAAAAGTGTGAAAAATAGAAAACGAGTCATCCTGCCATG
644 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
10156842 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCA
709 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * *
10156907 TGCAGAAATATAAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
774 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * ** * * *
10156972 GTCTCTCTGGCCGACGTAGT----GCCCG-CCGCCTGCTCGTTTTGTCAGATGGATTAG
839 GTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
** * * * * * ** * * *
10157026 GCATACAGAGTTCATTCCCAGTATAAGATTGGACCAGACTGA-TGTTGCGAAAGCAGAATCAATA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGCAGCAGGATCGACA
* * * * * * *
10157090 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
65 GCACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCCGGCCTCTCTGGCCGACTGAGCG-
* * * * *
10157155 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
129 CCGCACGCTCATTTCGT-GGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAG
* * * *
10157220 TTCACTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
193 TTCAGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCATG
* * * ** ** * *
10157285 TGCTGGTGCCGCATTTTTCTTCATCGGGGAACCATCACCGGAGCATCGTCGGAGAACCTGACCGA
258 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAACCGA
* ** * * *
10157350 CGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATATGCCG-TGGGTG
323 CGGCATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG-TGATGGATG
* * * *
10157413 CTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCA-AACCCCTTA
387 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
10157477 AAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
452 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACACT
* *
10157542 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTATGCATGCCA
517 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
10157607 ACAAAAATAAAACGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTAAAA
582 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTT-TAGAAAAAATTTTAAA
* ** * * *
10157671 AAATCCCGAACCGCGAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAA
646 AAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * **
10157736 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGTCATAAAAATGGCATTGGCATG
711 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
10157801 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCCT
776 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
10157866 CTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
841 CTCTTTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * ** * * *
10157927 GCATACGGAGTTCATTCCCAGTC-AAAATCGAACTGGATTGAGGGTTACGGCAGCAAGATCTG-T
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-GGGCAGCAGGATC-GAC
* * * * * * * * * *
10157990 AGGACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCG
64 AGCACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCCGGCCTCTCTGGCCGACTGAGCG
* * *
10158055 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
129 -CCGCACGCTCATTTCGT-GGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGA
* * * ** * * ** *
10158120 GTTCATTCCCAGTGTAAGATCGAATTAGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCAT
192 GTTCAGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCAT
* * ** * ** *
10158185 GTGTTGGTG-CTCATTTTTCTTTATCGGGGCACCATCGTCCGAGCATCGTC-GAAGAACCTGACC
257 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAA-AACCTAACC
** * * ** *
10158248 GGTGGCATCGGGGTTCCGGCGAT---------C----AGG-G-G-GC-C---A---GTG--GG-T
321 GACGGCATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGAT
* *
10158287 GCTAGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
386 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
10158352 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAG-TCATTAAAGTGATTGAAACGGGGACA
451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCT-ATTAAAGTGTTTGAAATGGGGACA
*
10158416 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
515 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * *
10158481 CAGCAAAAATACAAGGATCACGTCCACCACGTTTGAGACCAAAACTCCTTCCA-AAAAATTTTTA
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTT-TAGAAAAAATTTTA
* * *
10158545 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTACCATG
644 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
10158610 AAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCA
709 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * ** * *
10158675 CATAGAAATATAAAGATGAACCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACATCCC
774 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** *
10158740 GTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCATCCGCTCGTTTCGTCGGTTGGCTTAG
839 GTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * *
10158799 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGTGGGTTGTGGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGCAGCAGGATCGACA
* * * * *
10158864 GGATGCAGAGGGGGACCCGATTGATCCCCGACTTGCGTATCCGGCCTCTCTGGCTGGCTGAGCGC
65 GCACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCCGGCCTCTCTGGCCGACTGAGCGC
* * *
10158929 CGCACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTT
130 CGCACGCTCATTTCGTGGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTT
* * *
10158994 CATTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
195 CAGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCATGTG
* * *
10159059 TTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAATCGGCG
260 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAACCGACG
* * *
10159124 GCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTC
325 GCATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGATGCT-
* *
10159189 A-TACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAA
389 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
10159253 GAGCATTCGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAATGTCTT-AAATGGGGACACTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGT-TTGAAATGGGGACACTT
*
10159317 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCCAA
518 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
10159382 CAAAAATACAAGGATCACGTCTACCATGTTTGGGTCCAAAACTCCTTCAGAAAAAATTTTAAAAA
583 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTAGAAAAAATTTTAAAAA
* *
10159447 ATCTCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
648 ATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
10159512 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
713 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
10159577 GAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCTTGCGCATCCCGTCA
778 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
10159642 CTTTGGCAGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGCCTTAG
843 CTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * *
10159697 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGGGCAGCAGGATTGGCAG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGGGCAGCAGGATCGACAG
* * *
10159762 CACGTAGAGGGGGACCCGATTGATCCCCGGCTTGTGCATCTC-GCC-CATCTGGCCGACTGAGCG
66 CACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATC-CGGCCTC-TCTGGCCGACTGAGCG
* *
10159825 CCCGCGCGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
129 -CCGCACGCTCATTTCGT-GGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGA
* *
10159890 GTTCAGTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTCGGCTCGGGCAT
192 GTTCAGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCAT
* * *
10159955 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCACCGGAGAACCTAACCG
257 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAACCG
*
10160020 ACGGTATTGAGGTTCCAACGATC-GGGGGG-C-GGGGGGTGTGCGCACATGATGT-TCGATGGAT
322 ACGGCATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGT-GATGGAT
* * * *
10160081 GCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCGCCTT
386 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
10160146 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACAC
451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACAC
* * * *
10160211 TTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCA
516 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
10160276 AAAAAAAATACAAAGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAA
581 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTAGAAAAAATTTTAAA
* * * * *
10160341 AAATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAATGAGT-GCTCTTGCCATGA
646 AAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCG-TCTTGCCATGA
* * * * *
10160405 AACTTCACGTGAAGGCTTAAAGGACCACTGTACGAATTTACAAGCCCTAAAAATGGCATTGGCAT
710 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * *
10160470 GCAAAAATATGAGGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
775 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
10160535 TCTCTTTAGCCGGCGTAGTGCCCGTCCGCCCGCATGCTCGCTCGTTTCATCGATTGGCTTAG
840 TCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGC---C-CGCTCGTTTCATCGGTTGGCTTAG
* * *
10160597 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-GGGCAGCA
10160653 CATACTGGGC
Statistics
Matches: 4752, Mismatches: 567, Indels: 211
0.86 0.10 0.04
Matches are distributed among these distances:
871 112 0.02
872 138 0.03
873 87 0.02
875 52 0.01
876 372 0.08
877 1 0.00
878 1 0.00
881 2 0.00
884 1 0.00
885 4 0.00
886 206 0.04
887 264 0.06
888 82 0.02
889 10 0.00
890 105 0.02
891 79 0.02
892 316 0.07
893 70 0.01
894 365 0.08
895 44 0.01
896 464 0.10
897 71 0.01
898 533 0.11
899 188 0.04
900 146 0.03
901 252 0.05
902 2 0.00
904 1 0.00
906 4 0.00
907 4 0.00
908 1 0.00
909 79 0.02
910 387 0.08
911 309 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGGGCAGCAGGATCGACAG
CACGCAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCCGGCCTCTCTGGCCGACTGAGCGCC
GCACGCTCATTTCGTGGTTGAATTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTC
AGTCCCAGTCTAAGATCGGACCACACCGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCATGTGC
TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTAACCGACGG
CATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGATGCTAG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTAGAAAAAATTTTAAAAAATC
TCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTT
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:10161272 original size:717 final size:708
Alignment explanation
Indices: 10159881--10161352 Score: 2234
Period size: 717 Copynumber: 2.1 Consensus size: 708
10159871 CCCAGTCTAA
* * * * *
10159881 GCATACAGAGTTCAGTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCACATACTCGG
* *
10159946 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
* * *
10160011 ACCTAACCGACGGTATTGAGGTTCCAACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTTCGA
131 ACCGAACCGACGGTATTGAGGTTCCAACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
10160076 TGGATGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
196 TGGATGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
10160141 GCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGG
261 ACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTATTTGAAATGGG
* *
10160206 GACACTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGC
326 GACACTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTGTGC
* ***
10160271 ATGCAAAAAAAAATACAAAGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATT
391 ATGCAAAAAAAAATACAAAGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * * ***
10160336 TTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAATGAGTGCTCTTGCC
456 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAACAAAAAATGAGTGCTCTTGCC
*
10160401 ATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTACGAATTTACAAGCCCTAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTACGAATTTACAAGCCATAAAAATGGCATTG
* *
10160466 GCATGCAAAAATATGAGGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCGCAT
586 GCATGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACACTATCGATCCACGACTTGCGCAT
*
10160531 CCCGTCTCTTTAGCCGGCGTAGTGCCCGTCCGCCCGCATGCTCGCTCGTTTCATCGATTGGCTTA
651 CCCGTCTCTTTAGCCAGCGTAGTG--C-T-CGCCCGC---C-CGCTCGTTTCATCGATTGGCTTA
10160596 G
708 G
* * * *
10160597 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCACATACTCGG
* * **
10160662 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
* * **
10160727 ACCGGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCG
131 ACCGAACCGACGGTATTGAGGTTCCAACGATC-GGGGGGCCGGGGGTGTGCGCACATGATGTGCG
* * *
10160792 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCGCTATCCCTCATCAGACCTCGAGAACTCACA
195 ATGGATGCTGGTACTTGGCCCTTATATTGGTCCC-CTATCCCTCATCAAACCTCAAGAACTCACA
10160856 CCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTATTTGAAATG
259 CCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTATTTGAAATG
10160921 GGGACACCTT-TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTG
324 GGGACA-CTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTG
* * * *
10160985 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
388 TGCATGCAAAAAAAAATACAAAGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
10161050 ATTTTAAAAAATCTCGAACCGCAGAAAGTTTCAAAAGTCATGAAAAACAAAAAATGAGT-CGTCT
453 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAACAAAAAATGAGTGC-TCT
* * * *
10161114 TGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTACGAATTTACAAGCCATAAAAATGGC
* * *
10161179 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACACTATCGATCCACGACTTGC
* * *
10161244 GCATCCCTTCTCTTT-GACCAGTGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
647 GCATCCCGTCTCTTTAG-CCAGCGTAGTGCTCGCCCGCCCGCTCGTTTCATCGATTGGCTTAG
*
10161306 GCATACGGAGTTCATTCCCAGTCTAAGATCCA-ATCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCGAGGGTT
10161353 GCGACTGCAG
Statistics
Matches: 686, Mismatches: 64, Indels: 19
0.89 0.08 0.02
Matches are distributed among these distances:
709 63 0.09
710 3 0.00
713 7 0.01
714 1 0.00
715 1 0.00
716 147 0.21
717 461 0.67
718 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (708 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCACATACTCGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
ACCGAACCGACGGTATTGAGGTTCCAACGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
TGGATGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
ACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTATTTGAAATGGG
GACACTTATTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTAAGCTGAATTTTTTTGTGC
ATGCAAAAAAAAATACAAAGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAACAAAAAATGAGTGCTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTACGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACACTATCGATCCACGACTTGCGCAT
CCCGTCTCTTTAGCCAGCGTAGTGCTCGCCCGCCCGCTCGTTTCATCGATTGGCTTAG
Found at i:10162603 original size:26 final size:26
Alignment explanation
Indices: 10162573--10162625 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10162563 GTTCACTTAG
10162573 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10162599 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10162625 G
1 G
10162626 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10164689 original size:26 final size:26
Alignment explanation
Indices: 10164653--10164705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10164643 GTTGACTTAG
10164653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
10164679 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10164705 G
1 G
10164706 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10167532 original size:704 final size:708
Alignment explanation
Indices: 10166173--10167665 Score: 2444
Period size: 704 Copynumber: 2.1 Consensus size: 708
10166163 GCCGGCTGAG
*
10166173 CGCCCACACGCTCATTTCGTTGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCATTTCGTTGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGA
10166238 TCAGACTGAGGGTTGCAGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCA
66 TCAGACTGAGGGTTGCAGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCA
* * * *
10166303 TCGGGGCACCATCATCAAAGCATCGCCGGAGAACATGACCGACGGCACTGGGTTTCGACGATCGG
131 TCGGGGCACCATCATCAAAGCATCGCCAGAGAACAGGACCGACGGCACTGGGGTCCGACGATCGG
10166368 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCC
196 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCC
* *
10166433 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
261 CCTATCCATCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * **
10166498 GCTGCAAGTAACCGTTAAATTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGA
326 GCTGCAAGTAACCATTAAAGTATCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGA
**
10166563 ACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
391 ACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
*
10166628 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
456 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
*
10166693 AATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGT
521 AATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
10166758 TGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAGACTC
586 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCC
* *
10166823 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCT-TTCTGGCC-GACGTA-G-T
651 ACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTT-TGGCCAG-CGTAGGCT
10166879 -GCCCGCACGCTCATTTCGTTGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCATTTCGTTGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGA
10166943 TCAGACTGAGGGTTGCAGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCA
66 TCAGACTGAGGGTTGCAGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCA
* *** * * * * *
10167008 TCGGGGCACCATCGTTGGAGCATCGTCAGAGAACCGGACCGACGGTATTGGGGTCCGGCGATCGG
131 TCGGGGCACCATCATCAAAGCATCGCCAGAGAACAGGACCGACGGCACTGGGGTCCGACGATCGG
*
10167073 GGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
196 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCC
*
10167137 GCTATCCATCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTT
261 CCTATCCATCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * * *
10167202 GCTGCCAGTAGCTATTAAAGTATTTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGT
326 GCTGCAAGTAACCATTAAAGTATCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGA
10167267 ACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
391 ACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
10167332 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAA
456 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAA
* * * *
10167396 AAGTCATGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCA
520 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
10167461 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
585 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACC
*
10167526 CACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGTGTAGTGCT
650 CACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGCGTAG-GCT
* * * * **
10167586 CGCCCGCCCGCTCGTTTCGTCGGTTGG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCA
1 CGCCCGCACGCTCATTTCGTTGG-TGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGG
10167650 ATCAGACTGAGGGTTG
65 ATCAGACTGAGGGTTG
10167666 TGGCTGCAGG
Statistics
Matches: 730, Mismatches: 49, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
703 2 0.00
704 464 0.64
705 190 0.26
706 1 0.00
707 1 0.00
708 69 0.09
709 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (708 bp):
CGCCCGCACGCTCATTTCGTTGGTGGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCGGA
TCAGACTGAGGGTTGCAGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCA
TCGGGGCACCATCATCAAAGCATCGCCAGAGAACAGGACCGACGGCACTGGGGTCCGACGATCGG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCC
CCTATCCATCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCAAGTAACCATTAAAGTATCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGA
ACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCC
ACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGCGTAGGCT
Found at i:10168689 original size:26 final size:26
Alignment explanation
Indices: 10168653--10168704 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
10168643 GTTGACTTAG
10168653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10168679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10168705 CATCAGACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10169590 original size:26 final size:26
Alignment explanation
Indices: 10169554--10169605 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
10169544 TAACTTAGGC
*
10169554 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
10169580 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
10169606 TCGGATCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:10169625 original size:900 final size:898
Alignment explanation
Indices: 10167777--10179241 Score: 14463
Period size: 900 Copynumber: 12.8 Consensus size: 898
10167767 GTTGACTTAG
* * * *
10167777 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CGGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
10167841 GCTTGGGCTTGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
10167906 AACCTGACCGACGACTTTGGGGTTCTGACGATCGGGGGGGCTGGGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
10167971 CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATGAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10168036 ACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10168101 GGGTACACTTTTGTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTCG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
10168165 TGCATGCCAACAAAACTGCAAGGATGATGTCTACCAAGTTTGGGACCAAAACTCC-TTCCAAAAT
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA-
* * * *
10168229 AATTTTAAAAAATC-CTAAACCGTGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTG
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
10168293 TTGCCCTGAATCTTCAGGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
10168358 CATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
10168423 TGCATCTCGTCTCTCTGGCCGACATAGTGCTCACCCGCCCGCCCGTCCACTCGTTTTGTCAGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * *
10168488 GCTTAGGCATATGGAGTTCATTCCCATTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGA
708 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
** ** * ** * *
10168553 TCGGTAGCACACAGAGAAGGACCCAACCGATCCCTAGCTTGAGCATC-CTGCCCCTCTGGCCGAC
773 TCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTC-GCCCCTCTGGCCGGC
* * *
10168617 TGAGCTCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
10168679 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAG-GCGAGGGTTGTGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
10168743 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTTAGGGCACCATCATCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
10168808 ACCTGACCGACGGCTTTGGGGTTCCAATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
**
10168873 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATGC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
10168938 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
10169003 GGACACTTTTTTCAAATGGTCACATAATCTTGTACATTTCGAGTTTTTAGCTGACTTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
10169068 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTTTCGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAAAAAA
* ** ** *
10169133 TTTAAAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
455 TTT-TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
10169198 GCCATGAAACTTCACGTAAAGGCTTCAGGCACCATTGTATGAATTTACAAGCCATAAAAGTGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
10169263 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
10169328 CATCTCGTCTCTCTGGCCGACGTAGTGGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * **
10169393 GCATGCATAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAATA
714 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * *
10169458 GCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGTGCATCTCGCCCCTCTGGTCGGCTGAGTGC
779 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGC
*
10169523 CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
10169578 GAATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * ** *
10169643 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
10169708 GCCTGACCGACGGCATTGAGGTTTCGATGATCGGGGGGTCGAGCGGGGGG-GTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-C---CGGGGGGTGTGCGCACATGATG
* * * * *
10169772 T-CAGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAGCCACAAGAACT
192 TGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10169836 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGCTGCCAGCAGCCATTAAAGTGTCCGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
10169901 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
10169966 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGTCAAAACTCCTTCCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
10170031 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
10170096 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCA-AAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
10170160 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
10170225 ACGCATCCCGTCTCTCTGGCCGACGTAGTGCACGCCCGCTCGTCGGCCGCCCGCTCATTTCGTAG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGC-C--CGCCCGCCCGCTCGTTTCGTCG
* * *
10170290 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGCGGCAGT
704 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * *
10170355 AGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGCATC-CTGCCCTTCTAGC
769 AGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTC-GCCCCTCTGGC
* ** *
10170419 CGGCTGAGCACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTA
833 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
10170484 A
898 A
* * *
10170485 GCATACGAAGTTCATTCCTAGTCTAAGATTGGAT-AGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA-GACCGAGGGTTGCGGCAGCACATGCTGG
* * * * **
10170549 GCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** *
10170614 AACCTGACAGGTGGCATTGGGGTTTCGACGATCGGAGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGT
* * ** * *
10170679 GTGATGGGTGCTGGTACTTGGCCCTTAGATTTTCCCCCTATCCCTCATCAAACCTCGAGAATTGA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
10170744 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
10170809 TGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
10170874 GTGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** ** *
10170939 AATTTTAAAAAATCTCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
10171004 TGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
10171069 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGACTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
10171134 GCATCCCGTCTCTTTGGCTGGCGTAGTGCCCACCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
10171199 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGTAGGATCGGT
713 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGT
** * * *
10171264 AGTGCAC--AGAGGGGGACCCGTTCGATCCCCGGCTTGTGCATCTCACCCCTCTGGTCGGCTGAG
778 A--GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAG
* * *
10171327 CGGCCGCGCGCTTGTTTCGTGGGTTGACTTTGGCATATGGAGTTCATTCCTAGTCTAAGCGTACA
841 CGCCCGCACGCTCGTTTCGTGGGTTGAC--T----TA--G-G-------C-A---T-A-CG----
10171392 GAGTTCATTCCCAGTCTAA
880 GAGTTCATTCCCAGTCTAA
* ** * * * *
10171411 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
10171476 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
10171541 ACCTGACCGATGGCATTGGGGTTCCGATGATCGGGGGGACCGAGCGGGGGGGGTGCGCACATGAT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG--C---CGGGGGGTGTGCGCACATGAT
* *
10171606 GTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10171671 CACACCCCGTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
10171736 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
10171801 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCGAAAACT-CTTTCCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGA
** * * * *
10171864 AAAAATTTTAAAAAATCTCGAACCACAAAAAGCTTT-GAAAATCCTAAAAAATAGAAAATGAGTC
450 AAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
10171928 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
10171993 TGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCTCAGT
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** * * **
10172058 TTGCACATGCCGTCTCTCTGGCCGATGCAGTGCCGGGTCGCCTAC-CTACCGCTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CGC--CCGCTCGTTTCGTCGG
** * * **
10172122 TTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCAGACC-GAACTGAGGGTTATGGCAGC
705 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGC
** * ** * ** * * * *
10172186 AGGATCGACAGCACGTAGAAGGGGACCCGGTCGATCCTCGGCTTATGCATCCCACCCCTTTTGCC
769 AGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCC
* * * * *
10172251 GACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAG
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
10172316 GCATACGGAGTTCATTCGCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
10172381 CTCGGGCATGTGCTGGAGCCGCATTTTTCTTCATCGACGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * * *
10172446 ACCTAACTGACGGCATTGGGGTTTCGACAATCGGGGGGTCGGGGGTGTGTACGCACTTGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG-GTGTGCGCACATGATGTGC
*
10172511 GATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
10172576 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTACAGATTTTACAGGT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT----A----A-A-GT
* * *
10172641 TTGCTGCCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
315 GT-CTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * *
10172706 GAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAAATT
378 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * * * * * *
10172771 ATTCCGAAAAAATTTAAAAAAATTTTGAACCGTAAAAATTTTTAAAAATCGTGAAAAATAAAAAA
443 CTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
10172836 TCGGGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATAAATTTACAAGCC
508 -CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
10172901 ATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
572 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
10172966 CCACGGCTTGCGCTTCCCGTCTCTCTCGTCGGTGTAGTGCCTGCCCGCCCGCCCGCCTGCTTATT
637 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CT-C--GTT
* * * * *
10173031 TCATCGGTTGCCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACTGAGGGTTGC
698 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * * * * *
10173096 GACAGTACGATCGGTAGCAAGTAGAGGGGGACCCAACCGATCCCCGACTTGCGAATCCCGCCCCT
763 GGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCT
* *
10173161 CTGGCCGGCTGAGCACCCGCACGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
828 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
10173226 GTCTAA
893 GTCTAA
*
10173232 G-AT-C-GA----A----C---C----A---GAT-----CGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
10173271 CTCGAGCATGTGCTGGTGCCGTATTTTT-TTCGTCGGGGCACAATCGCCAGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
10173335 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGG-GGGTGTGCGCACATGATGT
* * * * *
10173400 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATGCCACATTAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * * * * *
10173465 CACCGTCTTAAAGATCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTATCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
10173530 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
10173595 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG-TTGGGGCTGAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
10173659 AATTTTAAAAGATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* ** *
10173724 TTCCACAAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10173789 ATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
10173854 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * ** ** *
10173919 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGTCTGAGGGATGCAACAATAGGATCGAT
713 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGT
* ** *
10173984 AGCACGTAGAGGGGGACCCGGCCGAT-CCCGGCCTTATGCATCTCGCCCCTTTGGCCGGCTGAGC
778 AGCACGTAGAGGGGGACCCGACCGATCCCCGG-CTTGCGCATCTCGCCCCTCTGGCCGGCTGAGC
* * * *
10174048 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGAATACAGAGTTCATTCCCAGTCTGA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
10174105 GCACACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
10174170 CTCGAGCATGTGCCGATGTCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
10174235 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGTGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
10174300 GATGGGTGCTGGTAGTT-GCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
10174364 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTATCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
10174429 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
10174494 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAATCTCC-TTCCAAAAGA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA-A
* * *
10174557 ATTTTAAAAAAT-TCCAAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
454 ATTTTAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
10174621 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * ** *
10174686 CTTGGCATGCAGAAATATGGAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGTTTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
10174751 GCATCCCGTCTCTCTTGG-AGGCGTAGT----GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
648 GCATCCCGTCTCTC-TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
10174811 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGG
712 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * ** *
10174876 CAGCACGTAGAGGGGGACCC-AGCCGATCCCCGGCTTGCGCATGC-CACCCCTCTGGCTAGCTAA
777 TAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCAT-CTCGCCCCTCTGGCCGGCTGA
* * * *
10174939 GTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
10174998 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATGGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * *
10175063 CTTGGGCATGTGCTGGTGCCGTATTTTTGTTCACCGGAGCACCATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
10175128 ACCTGACCGACGGCATTGGGGTTCCGACGATCGCGGGGGGAGGGGGGGCGGAGGGGTGTGCACAC
131 ACCTGACCGACGGCATTGGGGTTCCGACGAT--C-------GGGGGGCCGG-GGGGTGTGCGCAC
* * *
10175193 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCAA
186 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
10175258 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGTCATTAAAGTG
251 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
10175323 TCTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
10175388 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGG-CAATACTCCTT
381 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * * *
10175452 CCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCGA-AAAAAATAGAAAACG
446 TCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACG
* * * *
10175516 AGTCGTCTTGCCATGAAACTTCATGTGAATGCCTAAGGGACCATTTTATGAATTTACAAGCCATA
510 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
10175581 AAAATGGCATTGGCATGTAGGAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCA
575 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
10175646 CGGCTTGCGCATCCCGTCTCTCTGGCAC-GCGTAGTGCCCACCCGCCCGTCCGCTCGTTTCGTCG
640 CGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * ** * * * *
10175710 ATTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGTGGCAGT
704 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * ** * *
10175775 AGGATCGATAGCACATAGAGGGGGACCC-AGCTGATCCTCAACTTGTGCATCTCGCCTCTCTGGC
769 AGGATCGGTAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGC
* * * * * * * * *
10175839 CGGTTGAGCACCCGCACACTCGTTTCGTGAG-TAACTTCGGCATACAGAGTTCATTTCCAATCTA
833 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
10175903 A
898 A
* *
10175904 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTAGACCGAGGGTTACGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ***
10175968 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-ATTCGGGGCACCATCGCCAGAGCATCG-CTTT
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA-TCGGGGCACCATCGTCGGAGCATCGTCGGA
* *
10176031 GAACCTGATCGACGGCATTGGGGTTCCG-CTGATCGGGGGG-CGGAGCGGGGGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGAC-GATCGGGGGGCCGG-G-GGGTGTGCGCACATGAT
* *
10176094 GTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
10176159 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGGCATTAAAGTGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
10176224 AATGTGGACACTTTTTTCAAATAGTCACAAAATCTTGTACAATTCGAGTTTTTAACTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
10176289 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
*
10176354 AAAATTTTAAAAAATCTC-AGACCGTAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAATCTCGA-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
10176418 CCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
10176483 GGCATTGGCACGTAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATTCACGGC
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGC
* * * *
10176547 TTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCACTCGTTTCGTCGGTTGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
10176612 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTT-----A-C-GG--
709 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* *
10176668 C---AGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
774 CGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
* *
10176730 AGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAA
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
10176790 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACCGAGGGTTACGACAGTACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* *
10176854 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGCACCATCGTCAGAGCATCG-CTGGA
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC-GGA
* * * * * *
10176917 GAACCTGACTGGCGGCATTGGGGTTCCGGA-GATCGGGGGGGCCGAGGGGTGTACACACATGACG
129 GAACCTGACCGACGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
10176981 TGCGATGGTTGCTAGTACTTGG-CCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACT
*
10177045 CACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
10177110 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-TCACACTTCGAGTTTTTAGCTGAAGTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAA-TTT
** **
10177174 TTTTGTGCATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAAAACCTTTCG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** *
10177239 AAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
10177304 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAGTTT-CAAGGCATAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAA
* * *
10177368 ATGGCATTGGCACT-TAGAAATATGAAAATGTGCCTAAACCCTCCTACCACCCTATCGATCCACG
578 ATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
10177432 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCTCGCCCGTCGGCCCGCTCGTTTCGTC
642 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGTC
* * * * **
10177497 GGTTGGCTTAGGCATA-TGAAGTTCATTCCTAGTCTAAGATCAGACCCGACCGAGGGTTACGATA
703 GGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
** * * *
10177561 GCAGGATCGACAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCTTG--CCTCT--
767 GCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGG
*
10177622 ----CT----------A-----G--TC---GGCTGACTTAGGCATACGGAGTTCATTCCCAGTCT
832 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
10177663 AA
897 AA
* * * *
10177665 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
10177730 CTCAGGCATTTGCTGGTGCCTTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
10177795 ACCTAACTGGCGGCATTGGGGTTCCGACGAT--------C-GGGGG-GTGCGCCCAAGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
10177850 ATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
10177915 CTCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
10177980 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
10178045 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCC-ATCTGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAA
*
10178109 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
10178174 CCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** * * *
10178239 TGGAACACAGAAATATGAAGATGTGCCTAAACTCAACTACCACCCTATCGATTCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
10178304 ATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCTCTTTTCGTCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
10178369 CATACGGAGTTCATTCCTAGTCTAAGATCAGACC-GAACCAAGGGTTGCGGTAGCAGGATCAGCA
715 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * **
10178433 GCACGCAGAGGAGGACCCGACCGATCCCCGGC-TACACATC-CTGCCCCTCTGGCCGGCTAAAAG
779 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCG
* * * *
10178496 CCCACACGCTC-ATTCGGTGGGTTGACTTAGGCATATGGAGTTCATTCGCAGTCTAA
843 CCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
10178552 CCATACAGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *** * *
10178617 CTCGAGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** *
10178682 ACTTGACCGACGGCATTGGGGTTCCGGTGATCGGGTTGGCCGGGGGGTGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGG-GTGTGCGCACATGATGT
* * * *
10178747 GCGATGAGTGCTGGTACTTGGTCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
10178812 GACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
10178877 TGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACA-TTGCGAGTTTTTGGCTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTTT
* * *
10178941 TGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCACGTTTGGGGCCAAAACTTCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* ** *
10179006 AAATTTTAAAAAATC-CTGAATCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
10179070 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * * *
10179135 GCATTGGCACATAGAAATATGAAGATGTGCGTAAACCCACCTACTACCCTATTGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
10179200 ACGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
10179242 TCCACTCTTT
Statistics
Matches: 9243, Mismatches: 1067, Indels: 508
0.85 0.10 0.05
Matches are distributed among these distances:
859 8 0.00
860 118 0.01
861 7 0.00
862 1 0.00
863 5 0.00
864 265 0.03
865 151 0.02
866 40 0.00
867 3 0.00
872 4 0.00
873 171 0.02
874 1 0.00
875 124 0.01
876 57 0.01
877 172 0.02
878 69 0.01
879 102 0.01
880 4 0.00
881 3 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 132 0.01
886 299 0.03
887 451 0.05
888 9 0.00
889 54 0.01
890 59 0.01
891 195 0.02
892 3 0.00
893 324 0.04
894 8 0.00
895 11 0.00
896 262 0.03
897 690 0.07
898 52 0.01
899 277 0.03
900 1096 0.12
901 400 0.04
902 103 0.01
903 891 0.10
904 22 0.00
905 203 0.02
906 503 0.05
907 567 0.06
908 5 0.00
909 5 0.00
910 2 0.00
911 4 0.00
912 6 0.00
913 108 0.01
914 63 0.01
915 163 0.02
916 169 0.02
917 2 0.00
920 1 0.00
921 1 0.00
922 3 0.00
923 1 0.00
925 6 0.00
926 159 0.02
927 5 0.00
928 223 0.02
929 246 0.03
930 3 0.00
931 148 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGC
ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10170490 original size:26 final size:26
Alignment explanation
Indices: 10170459--10170511 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10170449 GTTGACTTAG
* *
10170459 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10170485 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10170511 G
1 G
10170512 ATTGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10171402 original size:26 final size:26
Alignment explanation
Indices: 10171366--10171437 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
10171356 TTGGCATATG
* *
10171366 GAGTTCATTCCTAGTCTAAGCGTACA
1 GAGTTCATTCCCAGTCTAAGCATACA
**
10171392 GAGTTCATTCCCAGTCTAAGCATATG
1 GAGTTCATTCCCAGTCTAAGCATACA
10171418 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
10171438 ATCAAACCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATACA
Found at i:10172317 original size:26 final size:26
Alignment explanation
Indices: 10172287--10172340 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
10172277 TGGGTTGGCT
10172287 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
10172313 TAGGCATACGGAGTTCATTCGCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
10172339 TA
1 TA
10172341 AGATCAGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:10174562 original size:897 final size:895
Alignment explanation
Indices: 10173206--10179241 Score: 7744
Period size: 897 Copynumber: 6.8 Consensus size: 895
10173196 GTTGACTTAG
* * *
10173206 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
10173271 CTCGAGCATGTGCTGGTGCCGTATTTTT-TTCGTCGGGGCACAATCGCCAGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
10173335 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-AGG-GGGTGTGCGCACATGATGT
* * * * *
10173400 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATGCCACATTAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * * * * *
10173465 CACCGTCTTAAAGATCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTATCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
10173530 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
10173595 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG-TTGGGGCTGAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* * *
10173659 AATTTTAAAAGATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* ** *
10173724 TTCCACAAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10173789 ATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
10173854 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** **
10173919 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGTCTGAGGGATGCAACAATAGGATCGAT
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAT
* * *
10173984 AGCACGTAGAGGGGGACCCGGCCGATCCCGGCCTTATGCATCTCGCCCCTTTGGCCGGCTGAGCG
777 AGCACGTAGAGGGGGACCCGACCGATCCCGG-CTTGTGCATC-CGCCCCTCTGGCCGGCTGAGCG
* * * *
10174049 CCCGCACGCTCGTTTCATGGGTTGACTTAGGAATACAGAGTTCATTCCCAGTCTGA
840 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
10174105 GCACACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
10174170 CTCGAGCATGTGCCGATGTCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
10174235 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGTGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCAGGGGGTGTGCGCACATGATGTGC
* * *
10174300 GATGGGTGCTGGTAGTT-GCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
10174364 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTATCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
10174429 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
10174494 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAATCTCCTTCCAAAAGAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AA
* * *
10174558 TTTTAAAAAAT-TCCAAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTT
454 TTTTAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
10174622 GCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCC
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * ** *
10174687 TTGGCATGCAGAAATATGGAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGTTTTGTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
10174752 CATCCCGTCTCTCTTGG-AGGCGTAGT----GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
648 CATCCCGTCTCTC-TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* **
10174812 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGC
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAT
* * ** * *
10174877 AGCACGTAGAGGGGGACCC-AGCCGATCCCCGGCTTGCGCATGCCACCCCTCTGGCTAGCTAAGT
777 AGCACGTAGAGGGGGACCCGA-CCGAT-CCCGGCTTGTGCAT-CCGCCCCTCTGGCCGGCTGAGC
* * *
10174941 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
10174998 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATGGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * *
10175063 CTTGGGCATGTGCTGGTGCCGTATTTTTGTTCACCGGAGCACCATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
10175128 ACCTGACCGACGGCATTGGGGTTCCGACGATCGCGGGGGGAGGGGGGGCGGAGGGGTGTGCACAC
131 ACCTGACCGACGGCATTGGGGTTCCGACGAT--C-------GGGGGGCCAG-GGGGTGTGCGCAC
* * *
10175193 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCAA
186 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
10175258 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGTCATTAAAGTG
251 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
10175323 TCTGAAATGGGGACACTTTTTTCTAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
10175388 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGG-CAATACTCCTT
381 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * *
10175452 CCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCGA-AAAAAATAGAAAACG
446 CC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACG
* * * *
10175516 AGTCGTCTTGCCATGAAACTTCATGTGAATGCCTAAGGGACCATTTTATGAATTTACAAGCCATA
509 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
10175581 AAAATGGCATTGGCATGTAGGAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCA
574 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
10175646 CGGCTTGCGCATCCCGTCTCTCTGGCAC-GCGTAGTGCCCACCCGCCCGTCCGCTCGTTTCGTCG
639 CGGCTTGCGCATCCCGTCTCTCTGGC-CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * ** * * *
10175710 ATTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATTGGATCAGA-TCGAGGGTTGTGGCAG
703 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAG
* * * ** *
10175774 TAGGATCGATAGCACATAGAGGGGGACCC-AGCTGATCCTCAACTTGTGCATCTCGCCTCTCTGG
767 CAGGATCGATAGCACGTAGAGGGGGACCCGA-CCGATCC-CGGCTTGTGCATC-CGCCCCTCTGG
* * * * * * * * *
10175838 CCGGTTGAGCACCCGCACACTCGTTTCGTGAG-TAACTTCGGCATACAGAGTTCATTTCCAATCT
829 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
10175902 AA
894 AA
* ** * *
10175904 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ***
10175969 CTCGGGCATGTGCTGGTGCCGCATTTTTCTT-ATTCGGGGCACCATCGCCAGAGCATCG-CTTTG
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA-TCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
10176032 AACCTGATCGACGGCATTGGGGTTCCG-CTGATCGGGGGGCGGAGCGGGG-GTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGAC-GATCGGGGGGC-CAG-GGGGTGTGCGCACATGATG
* *
10176095 TGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
10176160 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGGCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
10176225 ATGTGGACACTTTTTTCAAATAGTCACAAAATCTTGTACAATTCGAGTTTTTAACTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
10176290 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
* *
10176355 AAATTTTAAAAAATCTC-AGACCGTAAAAAGTTTCTAAAATCATGAAAAATAGAAAACGAGTCGC
451 AAATTTTAAAAAATCTCGA-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
10176419 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
10176484 GCATTGGCACGTAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATTCACGGCT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
10176548 TGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCTCACTCGTTTCGTCGGTTGGC
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
10176613 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTT-----A-C-GG--C
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATC
* *
10176669 ---AGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
774 GATAGCACGTAGAGGGGGACCCGACCGAT-CCCGGCTTGTGCAT-CCGCCCCTCTGGCCGGCTGA
* *
10176731 GCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAA
837 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10176790 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGAACCGAGGGTTACGACAGTACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
10176854 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGCACCATCGTCAGAGCATCG-CTGGA
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC-GGA
* * * * *
10176917 GAACCTGACTGGCGGCATTGGGGTTCCGGA-GATCGGGGGGGCC-GAGGGGTGTACACACATGAC
129 GAACCTGACCGACGGCATTGGGGTTCC-GACGATC-GGGGGGCCAG-GGGGTGTGCGCACATGAT
* * *
10176980 GTGCGATGGTTGCTAGTACTTGG-CCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAAAC
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AAC
*
10177044 TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
10177109 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-TCACACTTCGAGTTTTTAGCTGAAGTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAA-TT
** **
10177173 TTTTTGTGCATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAAAACCTTTC
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTC
* ** *
10177238 GAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGT
447 CAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
10177303 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAGTTT-CAAGGCATAAA
512 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAA
* * *
10177367 AATGGCATTGGCACT-TAGAAATATGAAAATGTGCCTAAACCCTCCTACCACCCTATCGATCCAC
576 AATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
10177431 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCTCGCCCGTCGGCCCGCTCGTTTCGT
640 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * **
10177496 CGGTTGGCTTAGGCATATGAAGTTCATTCCTAGTCTAAGATCAGACCCGACCGAGGGTTACGATA
701 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
* * * *
10177561 GCAGGATCGACAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCGCAT------CT-T-G-
766 GCAGGATCGATAGCACGTAGAGGGGGACCCGACCGAT-CCCGGCTTGTGCATCCGCCCCTCTGGC
* * *
10177617 C--CT-------------CTC---TAGTCGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
830 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
10177664 A
895 A
* ** * *
10177665 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAAGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
10177730 CTCAGGCATTTGCTGGTGCCTTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
10177795 ACCTAACTGGCGGCATTGGGGTTCCGACGAT--------C-GGGGG-GTGCGCCCAAGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
* *
10177850 ATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
10177915 CTCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
10177980 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
10178045 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCATCTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAT
*
10178110 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
455 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
10178175 CATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * * *
10178240 GGAACACAGAAATATGAAGATGTGCCTAAACTCAACTACCACCCTATCGATTCACGGCTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
10178305 TCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCTCTTTTCGTCGGTTGGCTTAGGC
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * *
10178370 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGCGGTAGCAGGATC-AGCAG
715 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA-TAG
* * *** * **
10178434 CACGCAGAGGAGGACCCGACCGATCCCCGGC-TACACATCCTGCCCCTCTGGCCGGCTAAAAGCC
779 CACGTAGAGGGGGACCCGACCGAT-CCCGGCTTGTGCATCC-GCCCCTCTGGCCGGCTGAGCGCC
* * * *
10178498 CACACGCTC-ATTCGGTGGGTTGACTTAGGCATATGGAGTTCATTCGCAGTCTAA
842 CGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
10178552 CCATACAGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *** * *
10178617 CTCGAGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * *
10178682 ACTTGACCGACGGCATTGGGGTTCCGGTGATCGGGTTGGCCGGGGGGTGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-AGGGG-GTGTGCGCACATGATGT
* * * *
10178747 GCGATGAGTGCTGGTACTTGGTCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
10178812 GACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
10178877 TGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACA-TTGCGAGTTTTTGGCTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTTT
* * * *
10178941 TGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCACGTTTGGGGCCAAAACTTCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAA
* ** *
10179006 AAATTTTAAAAAATC-CTGAATCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
10179070 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * * *
10179135 GCATTGGCACATAGAAATATGAAGATGTGCGTAAACCCACCTACTACCCTATTGATCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
10179200 ACGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
10179242 TCCACTCTTT
Statistics
Matches: 4534, Mismatches: 473, Indels: 259
0.86 0.09 0.05
Matches are distributed among these distances:
859 6 0.00
860 119 0.03
861 1 0.00
862 1 0.00
863 5 0.00
864 265 0.06
865 151 0.03
866 42 0.01
867 3 0.00
868 1 0.00
869 1 0.00
871 2 0.00
875 127 0.03
876 53 0.01
877 1 0.00
878 3 0.00
884 3 0.00
885 132 0.03
886 299 0.07
887 447 0.10
888 10 0.00
889 1 0.00
890 3 0.00
891 73 0.02
892 1 0.00
893 325 0.07
894 7 0.00
895 2 0.00
896 259 0.06
897 698 0.15
898 51 0.01
899 90 0.02
900 526 0.12
901 9 0.00
902 42 0.01
903 450 0.10
904 6 0.00
905 32 0.01
906 140 0.03
907 147 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCA
CGTAGAGGGGGACCCGACCGATCCCGGCTTGTGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10175002 original size:26 final size:26
Alignment explanation
Indices: 10174972--10175024 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10174962 GTTGACTTAG
10174972 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10174998 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10175024 G
1 G
10175025 ATCGGATGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:10175914 original size:26 final size:26
Alignment explanation
Indices: 10175878--10175930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10175868 AGTAACTTCG
*
10175878 GCATACAGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
10175904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
10175930 G
1 G
10175931 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:10176793 original size:26 final size:26
Alignment explanation
Indices: 10176764--10176816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10176754 GTTGACTTAG
*
10176764 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10176790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10176816 G
1 G
10176817 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10177675 original size:26 final size:26
Alignment explanation
Indices: 10177639--10177691 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10177629 GCTGACTTAG
10177639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10177665 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10177691 G
1 G
10177692 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10180287 original size:26 final size:26
Alignment explanation
Indices: 10180251--10180303 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10180241 GTTAACTTAG
10180251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10180277 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10180303 G
1 G
10180304 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10181144 original size:26 final size:26
Alignment explanation
Indices: 10181114--10181166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10181104 GTTGACTTAG
*
10181114 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10181140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10181166 G
1 G
10181167 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10182169 original size:158 final size:159
Alignment explanation
Indices: 10181820--10182213 Score: 484
Period size: 158 Copynumber: 2.5 Consensus size: 159
10181810 GCGTTGTGCC
* * *
10181820 CGCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
10181885 CCGGATGGAGGGTTGCAGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
66 CCGGATGGAGGGTTGCAGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGACCAATCCCCAGCT
**
10181950 TGCGCATCCTGCCCCTCTGACCGACTGAA
131 TGCGCATCCCACCCCTCTGACCGACTGAA
* *
10181979 CGCCCGTAAGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * * * * * *
10182044 TCGGATGGAGGGTTGTGGCAGTAGGATTAGCAGCATGTAGA-GAGGACCCGGCCAATCCTCAGCT
66 CCGGATGGAGGGTTGCAGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGACCAATCCCCAGCT
* * ** *
10182108 TGTGCATCCCACCTCTCTGGTCGACTGAG
131 TGCGCATCCCACCCCTCTGACCGACTGAA
* * *
10182137 CGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
* *
10182202 CCAGATCGAGGG
66 CCGGATGGAGGG
10182214 ATGCGACAAC
Statistics
Matches: 199, Mismatches: 36, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
158 108 0.54
159 91 0.46
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGATGGAGGGTTGCAGCAGCAAGATCAGCAGCACGCAGAGGAGGACCCGACCAATCCCCAGCT
TGCGCATCCCACCCCTCTGACCGACTGAA
Found at i:10185453 original size:26 final size:26
Alignment explanation
Indices: 10185424--10185476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10185414 GTTGACTTAG
* *
10185424 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
10185450 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
10185476 G
1 G
10185477 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:10187087 original size:26 final size:26
Alignment explanation
Indices: 10187057--10187109 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10187047 GTTGACTTAG
*
10187057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10187083 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10187109 G
1 G
10187110 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10189284 original size:26 final size:26
Alignment explanation
Indices: 10189255--10189307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10189245 GTTGACTTAG
* *
10189255 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10189281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10189307 G
1 G
10189308 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10190535 original size:897 final size:896
Alignment explanation
Indices: 10188378--10190949 Score: 3450
Period size: 903 Copynumber: 2.9 Consensus size: 896
10188368 GTTGGCTTAG
* ** ** *
10188378 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
10188443 C-TAGAGAATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCA-CATCGTCGGAGCATCACCGGAG
66 CTTAG-GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCCT-GGAGCATCGCCGGAG
* * * * *
10188506 AACCTTACCAGCGGTATTGGGGTTCCGGTGATC-GAGGGGGCCAGGGGTGGTGTGCAG-ACATGA
129 AACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGA-GGGGCC-GGGG-GGTGTGC-GCACAAGA
10188569 TGTGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
190 TGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
10188633 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAATGTCT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
10188698 GAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTT
* *
10188763 TTTG--TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
383 TTTGTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
*
10188826 GAAAAAATTTTAAAATATCTTGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
448 GAAAAAATTTTAAAA-ATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
**
10188891 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAA
512 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * *
10188956 ATGGCATTCGCACGTAGAAATAAGAAGATGTGCCTAAACCTACCTACCACCCAATCGATCCACGG
577 ATGGCATTAGCAAGCAGAAATATGAAGATGTGCCTAAACCCA-CT--TA-CCAATCGATCCACGG
* * *
10189021 CTTGCGCATCACGTCTCTCTGACTGACGGAGTGGCCGCCC-CTCCGCCCGCCCGCTCGTTTCATC
638 CTTGCGCATCACGTCTCTCTGGCTG-CGTAGTGCCCGCCCGC-CCGCCCGCCCGCTCGTTTCATC
* **
10189085 GGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATGGAGGGTTGCGGCAA
701 GGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGAACGAGGGTTGCGGCAA
*
10189150 CAGGATCGGTAAGACACAGAGGGGGACCAAGCCGATCCCCGGCTTACGCATCCCGCTCCTCTGGC
766 CAGGATCGGTAAGACACAGAGGGCGACCAAGCCGATCCCCGGCTTACGCATCCCGCTCCTCTGGC
* ** * * * * * *
10189215 CTGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTA
831 CAGCAGAGAGCCCACACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCCA
10189280 A
896 A
** * *
10189281 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
10189346 CTTGGGCATGTGCTCGTGCCACATTTTTCTTCGTCGGGGCACCATTGCC-GGAGCATCGTCGAAG
66 CTTAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA-T-CCTGGAGCATCGCCGGAG
* * *
10189410 AACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATA-ATG
129 AACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGC-CGGGGGGTGTGCGCACA-AGATG
*
10189474 TGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
10189539 ACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
10189604 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTG
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTG
* *
10189669 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
387 TT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
*** * * * * **
10189734 AAAATTTTAAAAACTCCCAAACCGGAAAAAATTTTGAAAATCGTGAAAAAAAGAAAACGAGTAAT
451 AAAATTTTAAAAA-TCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
10189799 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
10189864 GCATTAGCAAGCAGAAATATGAAGATGTGCCGAAACCCACTTA-CAA-GGATCCACTGCTTACGC
580 GCATTAGCAAGCAGAAATATGAAGATGTGCCTAAACCCACTTACCAATCGATCCACGGCTTGCGC
* * * * * * *
10189927 ATCCCGTCTCTTTGGGTAGCGTAGAGCCCGCCCGCCCGTCCGCCCGCTCGTTTAATCGATTGGCT
645 ATCACGTCTCTCTGGCT-GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * * *
10189992 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGTGGCAACAGGATCG
709 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGAACGAGGGTTGCGGCAACAGGATCG
* * * * * * *
10190057 G-CAGCACGCAGAGGTCGACCCAA-CCGAT-CCCTGTTTACGTATCCCGC-CCTTCTGGTCAGCA
774 GTAAG-ACACAGAGGGCGA-CCAAGCCGATCCCCGGCTTACGCATCCCGCTCC-TCTGGCCAGCA
10190118 GAGAGCCCACACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCCAA
836 GAGAGCCCACACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCCAA
* * *
10190179 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** **
10190244 CTTAGCCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCACTGGAGCATCGCCGGAGA
66 CTTAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATC-CTGGAGCATCGCCGGAGA
* * *
10190309 ACCTGACCGGCGGCATTAGGGTTCCGGCAATCGGAGGGGCCGGGGGGTGTGCGCACAAGATGTGC
130 ACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGTGTGCGCACAAGATGTGC
* * *
10190374 GATGGGGGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
10190439 CCCCTTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* ** * *
10190504 GGGAAACTTTTTTCAGTTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTGTTT-TG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTT-TTTGTT
* * * *
10190568 CGCATGCCAAAAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCTAAAAATCCTTCCGAAAAA
389 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* *
10190633 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTT-AAAAATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
10190698 GGCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
10190763 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
583 TTAGCAAGCAGAAATATGAAGATGTGCCTAAACCCACTTACCA----ATCGATCCACGGCTTGCG
** *** * *
10190828 CATCTTGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGGTGGCTCGTTTCGTCGGTTGGG
644 CATCACGTCTCTCTGGCT-GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * *
10190893 TTAGGCATACGAAGTTCATTCCCACTCTAAGATCGGACCGGAACGAGGGTTACGGCA
708 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGAACGAGGGTTGCGGCA
10190950 GCACATGCTA
Statistics
Matches: 1458, Mismatches: 182, Indels: 59
0.86 0.11 0.03
Matches are distributed among these distances:
896 207 0.14
897 208 0.14
898 226 0.16
899 139 0.10
900 9 0.01
901 1 0.00
902 123 0.08
903 278 0.19
904 57 0.04
905 209 0.14
906 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
CTTAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCCTGGAGCATCGCCGGAGAA
CCTAACCGGCGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGTGTGCGCACAAGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTGTTTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTA
GCAAGCAGAAATATGAAGATGTGCCTAAACCCACTTACCAATCGATCCACGGCTTGCGCATCACG
TCTCTCTGGCTGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAATCTAAGATCAGACCGGAACGAGGGTTGCGGCAACAGGATCGGTAAGAC
ACAGAGGGCGACCAAGCCGATCCCCGGCTTACGCATCCCGCTCCTCTGGCCAGCAGAGAGCCCAC
ACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCCAA
Found at i:10191574 original size:716 final size:718
Alignment explanation
Indices: 10190179--10191647 Score: 2168
Period size: 716 Copynumber: 2.1 Consensus size: 718
10190169 CCCAGTCCAA
* * * *
10190179 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACGAGGGTTACGGCAACACATGCTAGG
* *
10190244 CTTAGCCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCACTGGAGCATCGCCGGAGA
66 CTCAGCCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCACTGGAGCATCGCCAGAGA
* *
10190309 ACCTGACCGGCGGCATTAGGGTTCCGGCAATCGGAGGGGCCGGGGGGTGTGCGCACAAGATGTGC
131 ACCTGACCGGCAGCATTAGGGTTCCGGCAATCGGAGGGGCCGGGGGGTGTACGCACAAGATGTGC
* *
10190374 GATGGGGGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGGGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
10190439 CCCCTTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* **
10190504 GGGAAACTTTTTTCAGTTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTGTTTTGC
326 GGAAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTGTTTTGC
*
10190569 GCATGCCAAAAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCTAAAAATCCTTCCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCTAAAAATCCTTCCGAAAAAA
*
10190634 TTTTAAAAAATCTTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
10190699 GCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
10190764 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
586 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
*** * * * *** * *
10190829 ATCTTGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGGTGGCTCGTTTCGTCGGTTGGGT
651 ATCCCATCTATCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
10190894 TAG
716 TAG
* * *
10190897 GCATACGAAGTTCATTCCCACTCTAAGATCGGACCGGAACGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACGAGGGTTACGGCAACACATGCTAGG
* * * *
10190962 CTCGGGCATGTGCTGGTGCCGTATTTTT-TTT-CGTCGGGGCACCATC-GTCGGAGCATCGTCAG
66 CTCAGCCATGTGCTGGTGCCGTATTTTTCTTTAC--CGGGGCACCATCACT-GGAGCATCGCCAG
* * ** *
10191024 AGAACCTGACCGGTAGCATTGGGGTTCCGGTGAT-GG-GGGGCCGGGGGGTGTACGCACATGATG
128 AGAACCTGACCGGCAGCATTAGGGTTCCGGCAATCGGAGGGGCCGGGGGGTGTACGCACAAGATG
* * *
10191087 TGCGATGGGTGCTGGAACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGGGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
10191152 ACACCCCCTGAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAA
258 ACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
*
10191217 AT-GGAAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT-T
323 ATGGGAAA-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTGT
* * *
10191280 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGG-TCAAAACA-CCTT-C
386 TTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCT-AAAA-ATCCTTCC
* * * *
10191342 GAAAAAAATTTTCAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAG
449 G-AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAG
* * *
10191407 TCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
* *
10191472 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCTCCCTATCGATCCACG
578 AATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
10191537 GCTTGCACATCCCATCTATCTGGCCGGCTTGGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATT
643 GCTTGCACATCCCATCTATCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATC
10191602 GGTTGGCTTAG
708 GGTTGGCTTAG
* *
10191613 GCATACGGAGTT-ACTCCCAGTCTAAGATCAGACCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
10191648 AACCGAGAGT
Statistics
Matches: 672, Mismatches: 71, Indels: 19
0.88 0.09 0.02
Matches are distributed among these distances:
715 27 0.04
716 499 0.74
717 11 0.02
718 135 0.20
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAACGAGGGTTACGGCAACACATGCTAGG
CTCAGCCATGTGCTGGTGCCGTATTTTTCTTTACCGGGGCACCATCACTGGAGCATCGCCAGAGA
ACCTGACCGGCAGCATTAGGGTTCCGGCAATCGGAGGGGCCGGGGGGTGTACGCACAAGATGTGC
GATGGGGGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGAAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTGTTTTGC
GCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCTAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
ATCCCATCTATCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
TAG
Found at i:10191807 original size:26 final size:26
Alignment explanation
Indices: 10191771--10191823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10191761 GTTGACTTAG
10191771 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
10191797 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10191823 G
1 G
10191824 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:10194968 original size:26 final size:26
Alignment explanation
Indices: 10194932--10194984 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10194922 GTTGACTTAG
*
10194932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10194958 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10194984 G
1 G
10194985 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10199492 original size:869 final size:845
Alignment explanation
Indices: 10197454--10199804 Score: 2955
Period size: 869 Copynumber: 2.7 Consensus size: 845
10197444 CCCAGTTTAA
* *
10197454 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACTGGTACCAAGGG-TACGACAGCAAACTGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGG-ACCAAGGGTTGCGACAGCACA-TGCTG
*
10197517 GCTCGAAATGTGCTAGTG-CAC-TTTTTCTTCGTCGGAGGGGCACCATTCGCCGGAGCATCACCG
64 GCTCGAAATGTGCTGGTGCCACATTTTTCTTCGTC---GGGGCACCA-TCGCCGGAGCATCACCG
* *
10197580 GGAACCTGGAGCCGGACAGTATTGGGGCTAGCGCTATTCCCAATGATC-GAGGGGC-GGGGGTGT
125 AGAACCT-GA-CCGG-CAGTATT--GG---G-G---TT-CC-ATGATCGGGGGGGCAGGGGGTGT
10197643 -CGCACATGATATGCGATGGGGTGCTGGTACTTGGGCCCCTTATATTGGCCCCCTATCCCTCATC
176 GCGCACATGATATGCGAT-GGGTGCTGGTACTT-GG-CCCTTATATTGG-CCCCTATCCCTCATC
10197707 AAACC-CGCAATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
237 AAACCTCG--ATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
10197771 CCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCCAGT
300 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGT
* *
10197836 TTTTAGCT-AAATATTTTTGTGCATGCCAAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGG
365 TTTTAGCTGAAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
10197900 CCAAAATTCCTTCTGAAAAAATTTTAAAAAAT-CTCAACCGAAAAAAGTTTCAAAAATCATGAAA
429 CCAAAAATCCTTC-CAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT-AAAAATCATGAAA
*
10197964 AATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
492 AAT-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
10198029 TACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
556 TACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
10198094 CTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCTTGCCCGCCCGCC
621 CTATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCGAC--AGTA--CGC-TGCCCGCCCG-C
* **
10198159 CACTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCAGACTG
680 CACTCATTTCGTCAGTTGGCTTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCAGACCA
* * * *
10198224 AGGGTTGCTGTAGCAGAGGGGGACCCGATCGATCCCCGGCTTACGTATCCTGCCCTCTGGCCGAC
745 AGGGTTGCTGTAGCAGAAGGGGACCCGACCGATCCCCGGCTTACGCATCCTCCCCTCTGGCCGAC
* *
10198289 TGACCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
810 TGACCGCCCGCACGATCGTTCCATGGGTTGACTTAG
* * * * *
10198325 GCATATGGAGTTCATTCCCAGTCTAAGATCAAATTGGACCAAGGGTTGGGACAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGACAGCACATGCT-GG
* * * ** * *
10198390 CTCGACTATATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCATCGGAGCATCGTCGGA
65 CTCGA--A-ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ACCGA
* * * * * *
10198455 GAACCTGACTGGCGGTAATAGGGTTCCACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
126 GAACCTGACCGGCAGTATTGGGGTTCCATGATCGGGGGGG-CA-GGGGGTGTGCGCACATGATAT
* * * * *
10198520 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTATCCCTCATAAAACCTCAAGAACTCAC
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGATAACTCAC
*
10198585 ACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
254 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
10198650 TGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTA-ATGAAATTTATTT
319 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAAATTT-TTT
**
10198714 TGTGCATGCC-AAAAAATACAAAGGATCGTGTCTACCAAGTTTGGGGCCAAAAAATCCTTCCAAA
383 TGTGCATGCCAAAAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCC-AAAAATCCTTCCAAA
* *
10198778 ACAATTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAATCGTGAAAAAGAGAAAACGAGTCGTA
446 A-AATTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAATCATGAAAAATA-AAAACGAGTCGT-
*
10198843 CTTGCCATGAAACTTCACTGTG-AGGCTTAAGGGACCATTGTATGTAATTTAGAAGCCATTTAAA
508 CTTGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATG-AATTTACAAGCCA--TAAA
* * * * *
10198907 AATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCTGCCACCCTATTAATCCATG
569 AATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACG
* * * *
10198972 ACTTGCGCATCCCGTGTCTCTGGCTGAC-GTA-G-TGCCCGCCCG-C-CTCGTTTCGTCGGTTGG
634 ACTTGCGCATCCCGTCTCTCTGGCCGACAGTACGCTGCCCGCCCGCCACTCATTTCGTCAGTTGG
* *
10199032 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGGGGCAGCATGAT
699 CTTAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGACCAGACCAAGGGTT------GC-TG--
* * * *
10199097 TGACAGCACACAGAATGGGACCC-AGCCGATCCCCGGCTTGCGCATCTTACCCCTCTGGCCGGCT
755 T---AG----CAGAAGGGGACCCGA-CCGATCCCCGGCTTACGCATCCT-CCCCTCTGGCCGACT
** *
10199161 GAGTGCCCGCACGATCGTTTCATGGGTTGACTTAG
811 GACCGCCCGCACGATCGTTCCATGGGTTGACTTAG
* *
10199196 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGA-CAGCACATGCT-G
10199260 GCTC-AAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAG
64 GCTCGAA--ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAG
* *
10199324 AACCTGACCGGCAGCATTGGGGTTCCTGTGATCGGGGGGGTCAGGGGGTGTGCGCACATGATATG
127 AACCTGACCGGCAGTATTGGGGTTCC-ATGATCGGGGGGG-CAGGGGGTGTGCGCACATGATATG
* * *
10199389 CGATGGGTGTTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCCTCAAACCTTGATAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGATAACTCAC
*
10199454 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAAT
254 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10199519 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGATTTTTTAGCTG-AATTTTTTT
319 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAAATTTTTTT
* * * *
10199583 TTGCATGCCAACAAAAATACAAGGATCACGTATACCATGTTTGGGGCCAAAACTCCTTCCGAAAA
384 GTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAA
* *
10199648 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAACGAGTCGTCTT
447 AATTTTAAAAAATCCTGAACCGTAAAAAG-TTTAAAAATCATGAAAAATAAAAACGAGTCGTCTT
*
10199713 GCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
511 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
10199778 TTGGCATGCAGAAATATGAAGATGTGC
576 TTGGCATACAGAAATATGAAGATGTGC
10199805 TGGTGCCACC
Statistics
Matches: 1292, Mismatches: 133, Indels: 117
0.84 0.09 0.08
Matches are distributed among these distances:
854 62 0.05
855 1 0.00
857 10 0.01
859 11 0.01
860 160 0.12
861 88 0.07
862 75 0.06
863 18 0.01
864 57 0.04
865 103 0.08
866 18 0.01
867 39 0.03
868 141 0.11
869 245 0.19
870 42 0.03
871 147 0.11
872 22 0.02
873 13 0.01
874 18 0.01
875 10 0.01
876 2 0.00
877 10 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (845 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGACAGCACATGCTGGC
TCGAAATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAGAACC
TGACCGGCAGTATTGGGGTTCCATGATCGGGGGGGCAGGGGGTGTGCGCACATGATATGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAAATTTTTTTGTGCATG
CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAA
AAATCCTGAACCGTAAAAAGTTTAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCGTCT
CTCTGGCCGACAGTACGCTGCCCGCCCGCCACTCATTTCGTCAGTTGGCTTAAGCATACGGAGTT
CACTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCTGTAGCAGAAGGGGACCCGACCGATCCC
CGGCTTACGCATCCTCCCCTCTGGCCGACTGACCGCCCGCACGATCGTTCCATGGGTTGACTTAG
Found at i:10200326 original size:531 final size:531
Alignment explanation
Indices: 10199268--10200335 Score: 1678
Period size: 531 Copynumber: 2.0 Consensus size: 531
10199258 GGGCTCAAGC
* *
10199268 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAGAACCTGACC
1 ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGAGAACCTGACC
* * *
10199333 GGCAGCATTGGGGTTCCTGTGATCGGGGGGGTCAGGGGGTGTGCGCACATGATATGCGATGGGTG
66 GACAGCATTAGGGTTCCTGTGATCGGGGGGCTCAGGGGGTGTGCGCACATGATATGCGATGGGTG
* * * * * * *
10199398 TTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCCTCAAACCTTGATAACTCACACCCCCTTA
131 CTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
10199463 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACT
* *
10199528 TTTTTCAAATGGTCAGAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTGCATGCCA
261 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
10199593 ACAAAAATACAAGGATCACGTATACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
326 AAAAAAAAACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
**
10199658 AATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAAC
391 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAAC
* ** **
10199723 TTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
456 TTCACGTGAAGGCTTAACAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
10199788 GAAATATGAAG
521 GAAATATGAAG
* * * *
10199799 ATGTGCTGGTGCCACCTTTTTCTTTATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGAC
1 ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACC-GAGAACCTGAC
* * * * *
10199864 CGACGGCATTAGGGTTTC-GATGATCGGGGGGCT-GGGGGGTGTGCGCCCATGATGTGCGATGGG
65 CGACAGCATTAGGGTTCCTG-TGATCGGGGGGCTCAGGGGGTGTGCGCACATGATATGCGATGGG
10199927 TGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
129 TGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
10199992 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGGGGACA
194 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACA
10200057 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGC
259 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
10200122 CAAAAAAAAAACAAGGATTATG-ACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAGAATTTTA
324 CAAAAAAAAAACAAGGATCACGTA-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
10200186 AAAAATCCCGAACCG-AAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
388 AAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATA-AAAACGAGTCGTCTTGCCAT
*
10200250 GAAACTTCACGTGAAGGCTTAACAGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGC
451 GAAACTTCACGTGAAGGCTTAACAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
10200315 ACACA-AAATATGAAG
516 ACACAGAAATATGAAG
10200330 ATGTGC
1 ATGTGC
10200336 CTAAACCCAC
Statistics
Matches: 490, Mismatches: 42, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
530 6 0.01
531 364 0.74
532 120 0.24
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (531 bp):
ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGAGAACCTGACC
GACAGCATTAGGGTTCCTGTGATCGGGGGGCTCAGGGGGTGTGCGCACATGATATGCGATGGGTG
CTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAAAACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAACAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAG
Found at i:10202461 original size:6 final size:6
Alignment explanation
Indices: 10202450--10202478 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
10202440 TATTTAAAGA
10202450 AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAAT
10202479 AGAAAGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:10202641 original size:60 final size:58
Alignment explanation
Indices: 10202513--10202734 Score: 347
Period size: 58 Copynumber: 3.7 Consensus size: 58
10202503 TCTTGTGTAG
*
10202513 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTTTAA
* *
10202571 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTAATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAA-TTT-ATTTTTAA
*
10202631 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-ACCTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA---TTTTTTTTG-AAATTTATTTTTAA
10202692 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
10202735 ATTTTTATTT
Statistics
Matches: 150, Mismatches: 7, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
58 45 0.30
59 12 0.08
60 38 0.25
61 39 0.26
62 13 0.09
63 3 0.02
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTATTTTTAA
Found at i:10202694 original size:61 final size:59
Alignment explanation
Indices: 10202513--10202734 Score: 322
Period size: 61 Copynumber: 3.7 Consensus size: 59
10202503 TCTTGTGTAG
* * *
10202513 GGAAAATTGATACTTTCAACTTTTCCC-CAAAAATATTTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATTTTTTTTTGAAAATTTATTTTTAA
* * *
10202571 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTGAAATTTTAATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAAT-TTTTTTTTGAAAATTT-ATTTTTAA
10202631 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAACCTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAA--TTTTTTTTTGAAAATTTATTTTTAA
*
10202692 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-ATTTTTTTT
10202735 ATTTTTATTT
Statistics
Matches: 149, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
57 2 0.01
58 31 0.21
59 13 0.09
60 39 0.26
61 47 0.32
62 16 0.11
63 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATTTTTTTTTGAAAATTTATTTTTAA
Found at i:10202724 original size:121 final size:118
Alignment explanation
Indices: 10202513--10202734 Score: 381
Period size: 121 Copynumber: 1.9 Consensus size: 118
10202503 TCTTGTGTAG
* *
10202513 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
*
10202578 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTAATTTTCAA
66 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTAATTTTCAA
*
10202631 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAACCTTTTTTTTTGAAAATTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAAA--TATTTTTTTGAAAATTTATTTTTAAGGAA
10202696 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
63 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
10202735 ATTTTTATTT
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
118 27 0.28
119 5 0.05
121 65 0.67
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTAATTTTCAA
Found at i:10202773 original size:22 final size:22
Alignment explanation
Indices: 10202748--10202789 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10202738 TTTATTTAAA
10202748 GAAAATAGAACAAA-ATAAAAGT
1 GAAAATA-AACAAAGATAAAAGT
*
10202770 GAAAATAAATAAAGATAAAA
1 GAAAATAAACAAAGATAAAA
10202790 AATAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.14
Consensus pattern (22 bp):
GAAAATAAACAAAGATAAAAGT
Found at i:10202793 original size:17 final size:16
Alignment explanation
Indices: 10202771--10202817 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
10202761 AATAAAAGTG
10202771 AAAATAAATAAAGATAA
1 AAAATAAATAAA-ATAA
*
10202788 AAAATAAAGAAAAGTAA
1 AAAATAAATAAAA-TAA
10202805 AACAA-AAATAAAA
1 AA-AATAAATAAAA
10202818 ATAAGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 1 0.04
17 23 0.88
18 2 0.08
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (16 bp):
AAAATAAATAAAATAA
Found at i:10202834 original size:22 final size:22
Alignment explanation
Indices: 10202762--10202834 Score: 55
Period size: 21 Copynumber: 3.3 Consensus size: 22
10202752 ATAGAACAAA
*
10202762 ATAAAAGTGAAAATAA-ATAAAG
1 ATAAAA-TAAAAATAAGATAAAG
10202784 ATAAAAAATAAAGAA-AAG-TAAA-
1 AT--AAAATAAA-AATAAGATAAAG
*
10202806 ACAAAAATAAAAATAAGATAAAG
1 A-TAAAATAAAAATAAGATAAAG
10202829 ATAAAA
1 ATAAAA
10202835 AATATTAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
20 2 0.05
21 11 0.28
22 11 0.28
23 10 0.25
24 6 0.15
ACGTcount: A:0.74, C:0.01, G:0.10, T:0.15
Consensus pattern (22 bp):
ATAAAATAAAAATAAGATAAAG
Found at i:10203795 original size:27 final size:27
Alignment explanation
Indices: 10203743--10203797 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
10203733 AATTAGAACA
* *
10203743 GATAAATAAAAAAAAGACATATTATAG
1 GATAAATAAAAAAAAAACAGATTATAG
10203770 GATAAATAAAAAAAATAACAGATATATA
1 GATAAATAAAAAAAA-AACAGAT-TATA
10203798 ATTAGATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.62
28 5 0.21
29 4 0.17
ACGTcount: A:0.65, C:0.04, G:0.09, T:0.22
Consensus pattern (27 bp):
GATAAATAAAAAAAAAACAGATTATAG
Found at i:10203811 original size:32 final size:31
Alignment explanation
Indices: 10203712--10203813 Score: 95
Period size: 32 Copynumber: 3.2 Consensus size: 31
10203702 TCAAATAAAT
*
10203712 ATAAAAAAAATAATA-ATAGATAATTAGA-ACA
1 ATAAAAAAAATAA-AGATATATAATTAGATA-A
* *
10203743 GATAAATAAAAA-AAAGACATATTA-TAGGATAA
1 -ATAAA-AAAAATAAAGATATATAATTA-GATAA
10203775 ATAAAAAAAATAACAGATATATAATTAGATAA
1 ATAAAAAAAATAA-AGATATATAATTAGATAA
10203807 ATAAAAA
1 ATAAAAA
10203814 TACAAAAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
30 5 0.09
31 10 0.17
32 35 0.60
33 8 0.14
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.23
Consensus pattern (31 bp):
ATAAAAAAAATAAAGATATATAATTAGATAA
Found at i:10203832 original size:17 final size:18
Alignment explanation
Indices: 10203803--10203843 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
10203793 ATATAATTAG
10203803 ATAAATAAAAATACAAAA
1 ATAAATAAAAATACAAAA
10203821 ATAAATAAAATATA-AAATA
1 ATAAATAAAA-ATACAAA-A
10203840 ATAA
1 ATAA
10203844 TAATAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (18 bp):
ATAAATAAAAATACAAAA
Found at i:10203844 original size:3 final size:3
Alignment explanation
Indices: 10203824--10203877 Score: 55
Period size: 3 Copynumber: 19.7 Consensus size: 3
10203814 TACAAAAATA
* *
10203824 AAT AA- AAT -AT AA- AAT AAT AAT AAT AAT AAT AAT TA- AAT TAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10203868 -AT AAT AAT AA
1 AAT AAT AAT AA
10203878 ATATATAACT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
2 9 0.21
3 33 0.79
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10203890 original size:12 final size:12
Alignment explanation
Indices: 10203806--10203897 Score: 58
Period size: 11 Copynumber: 8.3 Consensus size: 12
10203796 TAATTAGATA
*
10203806 AATAA-AAATAC
1 AATAATAAATAT
* *
10203817 AAAAATAAATAA
1 AATAATAAATAT
10203829 AAT-ATAAA-AT
1 AATAATAAATAT
10203839 AATAAT--A-AT
1 AATAATAAATAT
*
10203848 AATAATAATTA-
1 AATAATAAATAT
*
10203859 AATTAT-AATAT
1 AATAATAAATAT
10203870 AATAATAAATAT
1 AATAATAAATAT
*
10203882 -ATAACTAAATAA
1 AATAA-TAAATAT
10203894 AATA
1 AATA
10203898 CATAGGAATA
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
9 9 0.14
10 7 0.11
11 25 0.40
12 19 0.30
13 3 0.05
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:10203932 original size:4 final size:4
Alignment explanation
Indices: 10203925--10203990 Score: 50
Period size: 4 Copynumber: 17.5 Consensus size: 4
10203915 AAAAAAAAAG
* * * * * *
10203925 AATA AATA AATA AATA AATA AAGA TATA CATA TATT AATA CAT- AAT-
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
10203971 AATA AAT- AATA AAT- AATA AA
1 AATA AATA AATA AATA AATA AA
10203991 ATACATAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
3 11 0.22
4 38 0.78
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.29
Consensus pattern (4 bp):
AATA
Found at i:10204002 original size:14 final size:15
Alignment explanation
Indices: 10203961--10204002 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
10203951 TACATATATT
10203961 AATACATAATAAT-A
1 AATACATAATAATAA
10203975 AATA-ATAAATAATAA
1 AATACAT-AATAATAA
10203990 AATACATAA-AATA
1 AATACATAATAATA
10204003 CAAAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.08
14 14 0.56
15 7 0.28
16 2 0.08
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (15 bp):
AATACATAATAATAA
Found at i:10204230 original size:41 final size:41
Alignment explanation
Indices: 10204142--10204266 Score: 214
Period size: 41 Copynumber: 3.0 Consensus size: 41
10204132 GAATTTGGTG
10204142 TCTAAACAGAGGCACCACGACTTTGGAAAACTAAATTGCTCC
1 TCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATTGCTCC
*
10204184 TCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCC
1 TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCC
* *
10204225 TCTAAACAGAGGCACCAAGACTTTGAAAAATAAATTGCTCC
1 TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCC
10204266 T
1 T
10204267 TGACAATCAT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 50 0.63
42 29 0.37
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (41 bp):
TCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCC
Found at i:10205526 original size:9 final size:8
Alignment explanation
Indices: 10205509--10205548 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
10205499 CATTTTCTCA
10205509 TTTCTTTT
1 TTTCTTTT
*
10205517 TTTCCTTT
1 TTTCTTTT
10205525 TTTCTTTTT
1 TTTC-TTTT
10205534 TTTCTTTT
1 TTTCTTTT
10205542 TTT-TTTT
1 TTTCTTTT
10205549 CATCATTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 4 0.14
8 18 0.62
9 7 0.24
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTCTTTT
Found at i:10205530 original size:16 final size:16
Alignment explanation
Indices: 10205509--10205548 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
10205499 CATTTTCTCA
10205509 TTTCTTTTTTTCCTTT
1 TTTCTTTTTTTCCTTT
*
10205525 TTTCTTTTTTTTCTTT
1 TTTCTTTTTTTCCTTT
10205541 TTT-TTTTT
1 TTTCTTTTT
10205549 CATCATTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTCTTTTTTTCCTTT
Found at i:10205546 original size:10 final size:9
Alignment explanation
Indices: 10205509--10205545 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
10205499 CATTTTCTCA
10205509 TTTC-TTTT
1 TTTCTTTTT
*
10205517 TTTC-CTTT
1 TTTCTTTTT
10205525 TTTCTTTTT
1 TTTCTTTTT
10205534 TTTCTTTTT
1 TTTCTTTTT
10205543 TTT
1 TTT
10205546 TTTCATCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 11 0.42
9 15 0.58
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:10205882 original size:11 final size:10
Alignment explanation
Indices: 10205864--10205897 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
10205854 GTGGCATTTA
10205864 TTTTTTCTTT
1 TTTTTTCTTT
10205874 TTCTTTTCTTT
1 TT-TTTTCTTT
10205885 TTTTTTCATTT
1 TTTTTTC-TTT
10205896 TT
1 TT
10205898 GAGACCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:10209543 original size:22 final size:22
Alignment explanation
Indices: 10209518--10209559 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10209508 TTTATTTAAA
10209518 GAAAATAGAACAAA-ATAAAAGT
1 GAAAATA-AACAAAGATAAAAGT
*
10209540 GAAAATAAATAAAGATAAAA
1 GAAAATAAACAAAGATAAAA
10209560 AATAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.14
Consensus pattern (22 bp):
GAAAATAAACAAAGATAAAAGT
Found at i:10209563 original size:17 final size:17
Alignment explanation
Indices: 10209541--10209591 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
10209531 AATAAAAGTG
*
10209541 AAAATAAATAAAGATAA
1 AAAATAAATAAAAATAA
10209558 AAAATAAA-AAAAAGTAA
1 AAAATAAATAAAAA-TAA
10209575 AACAA-AAATAAAAATAA
1 AA-AATAAATAAAAATAA
10209592 GATAAAGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 4 0.13
17 19 0.63
18 7 0.23
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (17 bp):
AAAATAAATAAAAATAA
Found at i:10209583 original size:21 final size:22
Alignment explanation
Indices: 10209557--10209597 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
10209547 AATAAAGATA
10209557 AAAAATAAAAAAAAG-TAAAAC
1 AAAAATAAAAAAAAGATAAAAC
*
10209578 AAAAATAAAAATAAGATAAA
1 AAAAATAAAAAAAAGATAAA
10209598 GATAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.12
Consensus pattern (22 bp):
AAAAATAAAAAAAAGATAAAAC
Found at i:10210533 original size:29 final size:28
Alignment explanation
Indices: 10210501--10210555 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
10210491 AAAAAATAAT
10210501 AGATA-ATTAGAACAGATAAATAAAAAACA
1 AGATATATTA-AA-AGATAAATAAAAAACA
* *
10210530 AGATATATTATAGGATAAATAAAAAA
1 AGATATATTAAAAGATAAATAAAAAA
10210556 AATAACAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 13 0.57
29 6 0.26
30 4 0.17
ACGTcount: A:0.64, C:0.04, G:0.11, T:0.22
Consensus pattern (28 bp):
AGATATATTAAAAGATAAATAAAAAACA
Found at i:10210552 original size:32 final size:32
Alignment explanation
Indices: 10210503--10210586 Score: 93
Period size: 32 Copynumber: 2.6 Consensus size: 32
10210493 AAAATAATAG
*
10210503 ATAATTAGA-ACAGATAAATAAAA-AACAAGATAT
1 ATAATTAGATA-A-ATAAAAAAAATAAC-AGATAT
*
10210536 ATTA-TAGGATAAATAAAAAAAATAACAGATAT
1 ATAATTA-GATAAATAAAAAAAATAACAGATAT
10210568 ATAATTAGATAAATAAAAA
1 ATAATTAGATAAATAAAAA
10210587 TACATAAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
32 32 0.73
33 11 0.25
34 1 0.02
ACGTcount: A:0.64, C:0.04, G:0.08, T:0.24
Consensus pattern (32 bp):
ATAATTAGATAAATAAAAAAAATAACAGATAT
Found at i:10210597 original size:4 final size:4
Alignment explanation
Indices: 10210576--10210771 Score: 75
Period size: 4 Copynumber: 51.2 Consensus size: 4
10210566 ATATAATTAG
* *
10210576 ATAA AT-A A-AA ATAC ATAA ATAA ATAA A-AT ATAA A-ATA AT-A AT-A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA
* *
10210619 AT-A AT-A AT-A ATAA ATAA ATTATA ATATA AT-A ATAA ATAT ATAA CTAA
1 ATAA ATAA ATAA ATAA ATAA A-TA-A ATA-A ATAA ATAA ATAA ATAA ATAA
* * * * *
10210666 ATAAA ATAC ATAGGA AT-A TTAA CAGAA AAAA AAAA ATAA ATAA ATAA
1 AT-AA ATAA ATA--A ATAA ATAA -ATAA ATAA ATAA ATAA ATAA ATAA
* * * * *
10210713 ATAA ATAA ATAA ATAT ATAC ATAT ATTA ATAC AT-A AT-A AT-A AT-A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
10210757 AT-A ATAA AT-A ATAA A
1 ATAA ATAA ATAA ATAA A
10210772 ATACAAAAGA
Statistics
Matches: 153, Mismatches: 23, Indels: 32
0.74 0.11 0.15
Matches are distributed among these distances:
3 44 0.29
4 91 0.59
5 14 0.09
6 4 0.03
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (4 bp):
ATAA
Found at i:10210617 original size:3 final size:3
Alignment explanation
Indices: 10210597--10210653 Score: 59
Period size: 3 Copynumber: 19.7 Consensus size: 3
10210587 TACATAAATA
*
10210597 AAT AA- AAT -AT AA- AAT AAT AAT AAT AAT AAT AAT AAAT AAAT TAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT
10210641 AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AA
10210654 ATATATAACT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
2 8 0.17
3 32 0.68
4 7 0.15
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10210636 original size:34 final size:34
Alignment explanation
Indices: 10210583--10210673 Score: 114
Period size: 34 Copynumber: 2.6 Consensus size: 34
10210573 TAGATAAATA
10210583 AAAATACATAAATAAATAAAATATAAAATAATAAT
1 AAAATACAT-AATAAATAAAATATAAAATAATAAT
* *
10210618 AATAATA-ATAATAAATAAATTATAATATAATAAT
1 AA-AATACATAATAAATAAAATATAAAATAATAAT
*
10210652 -AAATATATAACTAAATAAAATA
1 AAAATACATAA-TAAATAAAATA
10210674 CATAGGAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
32 4 0.08
33 5 0.10
34 33 0.66
35 4 0.08
36 4 0.08
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (34 bp):
AAAATACATAATAAATAAAATATAAAATAATAAT
Found at i:10210793 original size:14 final size:14
Alignment explanation
Indices: 10210776--10210802 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10210766 AATAAAATAC
10210776 AAAAGAAAAAAAAG
1 AAAAGAAAAAAAAG
10210790 AAAAGAAAAAAAA
1 AAAAGAAAAAAAA
10210803 TAATAATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAG
Found at i:10210864 original size:20 final size:21
Alignment explanation
Indices: 10210839--10210879 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
10210829 GGGCTTACCC
10210839 ATTTGGG-TCAGG-CCCAATTG
1 ATTTGGGCT-AGGACCCAATTG
10210859 ATTTGGGCTAGGACCCAATTG
1 ATTTGGGCTAGGACCCAATTG
10210880 GGTGTCTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (21 bp):
ATTTGGGCTAGGACCCAATTG
Found at i:10211981 original size:26 final size:26
Alignment explanation
Indices: 10211951--10212003 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10211941 GTTGACTTAG
10211951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10211977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10212003 G
1 G
10212004 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.