Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 60 of 121
Found at i:10212100 original size:11 final size:11
Alignment explanation
Indices: 10212084--10212116 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
10212074 GTCGGGGCAC
10212084 CATCGTCGGAG
1 CATCGTCGGAG
10212095 CATCGTCGGAG
1 CATCGTCGGAG
10212106 CATCGTCGGAG
1 CATCGTCGGAG
10212117 AACCGGACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:10213473 original size:902 final size:903
Alignment explanation
Indices: 10211239--10213574 Score: 3329
Period size: 908 Copynumber: 2.6 Consensus size: 903
10211229 AGGGTTCCAC
* *
10211239 GATCGGGAGGGCTAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
1 GATCGGG-GGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
10211304 TGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCCTAAAGTGCATTTGAGATTTTAC
65 TGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
10211369 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTAACAAAA
129 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
10211434 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTCTTGTGCATGCCAACAAAAATACAAGGATCACG
194 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACG
* *
10211499 TCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAGAATTTTACAAAATCCTGAACCGCAACAAG
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCTGAACCGCAA-AAA
* *
10211563 TTTT-GAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAA
322 TTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
10211627 GGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
387 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGC
* * * ** *
10211692 CTAAACCCACCTGCCACCCTATTGATCCACGGCTTGCGCATCCCGTGTCTCTGGCTGACGTAGTG
452 CCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTG
* ** * * * * *
10211757 CCT----GCCCCCGGCCCGCTTGTTTCGTTGGTTGGCTTAAGCATATGGAGTTCATTCCCAGTCT
517 CCTGCCCGCCCCCCGCCCGCTCATTTCATCGGTTGGCTTAAGCATACGGAATTCATTCCAAGTCT
* * * *
10211818 AAGATCGACCGGACCGAGGGTTGCGGCAGCAAGATCAACAGCACCCAAAGGGGACCCAGTTGATC
582 AAGATCGACCAGACCGAAGGTTGCAGCAGCAAGATCAACAGCACCCAAAGGGGACCCAGTCGATC
* * * *
10211883 CCCGGCTTGTGCATCTTGCCCCTCTGGCTGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACT
647 CCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * *
10211948 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCG
712 TAGGCATACGGAGTTCATTACCAATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCG
* * * * **
10212013 GACCGAGGGTTGCGGTAGCACCAGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCG
777 AACCGAGGGTTGCAGCAGCACCAGCTGGGCTCGAACATGTGCTGGTGCCACATTTTTCTTCACCG
* * *
10212078 GGGCACCATCGTCGGAGCATCGTCGGAGCATCGTCGGAGAACCGGACCAGCAGCATTGGGGTTCT
842 GGGCACCA-C-T----GCATCGTCGGAGCATCATCGGAGAACCGGACCAGCAGCATTGAGGTTCC
10212143 GGT
901 GGT
* * *
10212146 GATCGGGGGGGTCAGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGAACTTGGCCCTTATA
1 GATC-GGGGGGCCA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
10212211 TTGGCTCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTA
64 TTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
10212276 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATAGTCAGAAA
128 CAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
10212341 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCAC
193 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCAC
* ** ** *
10212406 GTATACCATCTTTGGGGAGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG
258 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAT
* **
10212471 TTTCCAAAATCGTGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
323 TTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
10212536 GGACCATTATATGAATTTACAAACCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCC
* *
10212601 CAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTTTCTGGCCGACGTAGTGC
453 CAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGC
*
10212666 CTGCCCGCCCCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAATTCATTCCAAGTCTA
518 CTGCCCGCCCCCCGCCCGCTCATTTCATCGGTTGGCTTAAGCATACGGAATTCATTCCAAGTCTA
* * * * *** ** * *
10212731 AGATCAGACCAGACTGAAGGTTGTAGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGAT
583 AGATC-GACCAGACCGAAGGTTGCAGCAGCAAGATCAACAGCACCCA-AAGGGGACCCAGTCGAT
* *
10212796 CCCCGGCTTGTGCATCCTGCCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
646 CCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* * * * *
10212861 TTAGGCATACGGAGTTCATTACCAATGTAAGCATAAGGAGTTCATTCTCAGTCTATGATCGGATC
711 TTAGGCATACGGAGTTCATTACCAATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGAACC
* *
10212926 GAACTGAGGGTTGCAGCAGCA-CATGCTGGGCTCGAACATGTGCTGGTGCCATATTTTTCTTCAC
776 GAACCGAGGGTTGCAGCAGCACCA-GCTGGGCTCGAACATGTGCTGGTGCCACATTTTTCTTCAC
* *
10212990 CGGGGCACCA-T-CA-C-T-GGAGCAT-ATCGGAGAACCTGACC-GACGGCATTGAGGTTCCGGT
840 CGGGGCACCACTGCATCGTCGGAGCATCATCGGAGAACCGGACCAG-CAGCATTGAGGTTCCGGT
10213048 GATCGGGGCGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 GATCGGGG-GGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
10213113 TGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
65 TGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
10213178 AGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACAGC-TTTTTCAAATGGTCACAAA
129 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAA
* *
10213242 ATCTTGTACACTTCGAGTTTGTAGCTGCATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
193 ATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
* ** * *
10213307 CGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACTGTAAAAA
257 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
10213372 TTTTCAAAAATCGT-AGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
322 TTTTCAAAAATCGTGA-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *** *
10213436 AGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACATAAATATGAAGATGTG
386 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTG
** * * * *
10213501 CTGAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGC
451 CCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT
10213566 GCC-GCCCGC
516 GCCTGCCCGC
10213575 TCGTTTCCTC
Statistics
Matches: 1277, Mismatches: 134, Indels: 42
0.88 0.09 0.03
Matches are distributed among these distances:
900 2 0.00
901 204 0.16
902 305 0.24
903 7 0.01
904 1 0.00
905 1 0.00
906 2 0.00
907 14 0.01
908 457 0.36
909 4 0.00
911 1 0.00
912 55 0.04
913 31 0.02
914 193 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (903 bp):
GATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAATTTT
CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCCAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCTG
CCCGCCCCCCGCCCGCTCATTTCATCGGTTGGCTTAAGCATACGGAATTCATTCCAAGTCTAAGA
TCGACCAGACCGAAGGTTGCAGCAGCAAGATCAACAGCACCCAAAGGGGACCCAGTCGATCCCCG
GCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATTACCAATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCGAACC
GAGGGTTGCAGCAGCACCAGCTGGGCTCGAACATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
ACCACTGCATCGTCGGAGCATCATCGGAGAACCGGACCAGCAGCATTGAGGTTCCGGT
Found at i:10213635 original size:26 final size:26
Alignment explanation
Indices: 10213596--10213648 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10213586 GTTGGCTTAG
* *
10213596 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
10213622 GCATACGTAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
10213648 G
1 G
10213649 ATCGGCCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:10214361 original size:26 final size:26
Alignment explanation
Indices: 10214324--10214376 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10214314 GTTGGCTTAG
10214324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10214350 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10214376 G
1 G
10214377 ATCGACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10214378 original size:728 final size:721
Alignment explanation
Indices: 10212791--10215031 Score: 3046
Period size: 728 Copynumber: 3.1 Consensus size: 721
10212781 GGGGACCCGG
* * * * * * * *
10212791 TCGATCCCCGGCTTGTGCATCCTGCCCCTTTGGCCGAC-TGAGCGCCCGCACGCTCGTTTCGTGG
1 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT-AGC-CCCGCCCGCTCGTTTCGTCG
* * * * * * *
10212855 GTTGACTTAGGCATACGGAGTTCATTACCAATGTAAGCATAAGGAGTTCATTCTCAGTCTATGAT
64 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGTAGTTCATTCCCAGTCTAAGAT
* * * * *
10212920 CGGATCGAACTGAGGGTTGCAGCAGCACATGCTGGGCTCGAACATGTGCTGGTGCCATATTTTTC
129 CGG-CCGAAC-GATGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTC
* ** * * **
10212985 TTCACCGGGGCACCATCAC-T-GGAGCATATCGGAGAACCTGACCGACGGCATTGAGGTTCCGGT
192 TTCACCAGGGCACCA-C-CGTCGGAGCATGCCGGAGAACCTGACCTACGGCATTGGGGTTCCGAC
* * *
10213048 GATCGGGGCGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
255 GATCGGGG-GG-CGGGGGGTGCGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
10213113 TGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
318 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
10213178 AGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACAGC-TTTTTCAAATGGTCACAAA
383 AGGTTTGCTGC-AGTAACTATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAA
* *
10213242 ATCTTGTACACTTCGAGTTTGTAGCTGCATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
446 ATCTTGTGCACTTCGAGTTTGTAGCTGCA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
10213307 CGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACTGTAAAAA
510 CGTCTACCAAGTTT-GGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT-CCAAACTGTAAAAA
* *
10213372 TTTTCAAAAATCGTAGAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
573 ATTTCAAAAGTCGTA-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
10213437 GGGACCATTGTATGAATTTACAAGCCAC-AAAAATGGCATTGGCACACATAAATATGAAGATGTG
637 GGGACCATTGTATGAATTTACAA-CCACAAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
*
10213501 CTGAAACCCACCTACCACCCTA
701 C-CAAACCCACCTACCACCCTA
* * * *
10213523 TCAATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGCGCCGCCCGCTCGTTTCCTCGGT
1 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGCCCCGCCCGCTCGTTTCGTCGGT
* *
10213588 TGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGTAATTCATTCCCAGTCTAAGATCG
66 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCG
* * * * *
10213653 GCCGGATCGATGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTC
131 GCC-GAACGATGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTC
10213718 ACCAGGGCACCACCGTCGGAGCATCGCCGGAGAACCTGACCTACGGCATTGGGGTTCCGACGATC
195 ACCAGGGCACCACCGTCGGAGCAT-GCCGGAGAACCTGACCTACGGCATTGGGGTTCCGACGATC
* *
10213783 GGGGGGCGGGGGGTGCGCGCGCATGATGTGCAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCC
259 GGGGGGCGGGGGGTGCGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
10213848 CCTATCCCTCATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATGTTTACAGGTT
324 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT-TTTACAGGTT
*
10213913 TGCTGTCAGTAACTATATAAAGGGTCTGAAATGGGGACACTTTTTTCAAATGCGTCACAAAATCT
388 TGCTG-CAGTAACTAT-TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG-GTCACAAAATCT
10213978 TGTGCACTTCGAG-TTGTA-CTGCA-TTTTTTGTGACATG-CAACAAAAATACAAGGAATCACGT
450 TGTGCACTTCGAGTTTGTAGCTGCATTTTTTTGTG-CATGCCAACAAAAATACAAGG-ATCACGT
*
10214039 CTTACCAAGTTTGGGCCAAACCACCTT-CGAAAAAATTTTAAAAAAT-CAAACTGTAAAAAATTT
513 C-TACCAAGTTTGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCAAACTGTAAAAAATTT
10214102 CAAAAGT-GTAAAAATAGAAAATGAGTCGTCTTGCCAAT-AAACTTCACGTGGAAGGCTTAA-GG
577 CAAAAGTCGTAAAAATAGAAAATGAGTCGTCTTGCC-ATGAAACTTCACGT-GAAGGCTTAAGGG
*
10214164 ACCA-TGAATGAATTTTAC-ACCACAAAAAAATGGCATT-GCACACAAGAAATATTTGAAGATGT
640 ACCATTGTATGAA-TTTACAACCAC-AAAAAATGGCATTGGCACAC-AGAAATA--TGAAGATGT
10214226 GCCAAACCCACCTACCACCCTA
700 GCCAAACCCACCTACCACCCTA
*
10214248 TCGATCCACGGCTTGGCGCATTCCCGCCTCTCTGGCCGGCGTTGCACCCGCCCGCTCGTTTCGTC
1 TCGATCCACGGCTT-GCGCA-TCCCGCCTCTCTGGCCGGCGTAGC-CCCGCCCGCTCGTTTCGTC
*
10214313 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGA
63 GGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGTAGTTCATTCCCAGTCTAAGA
* * * * * *
10214378 TCGACCAAACCAATGGTTACGGCAGCGCATGCTGAGCTCGAGCATGTGCTGGTGCCGTATTTTTC
128 TCGGCCGAA-CGATGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTC
10214443 TTCACCAGGGCACCACCGTCGGAGCATTGCCGGAGAACCTGACCTACGGCATTGGGGTTCCGACG
192 TTCACCAGGGCACCACCGTCGGAGCA-TGCCGGAGAACCTGACCTACGGCATTGGGGTTCCGACG
* *
10214508 ATCGGGGGGCGGGGGGTGCGCGTGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG
256 ATCGGGGGGCGGGGGGTGCGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
10214573 CCCCCTATCCTTCATCAAAGCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
321 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
10214638 TTTGCTACCAGTAACTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
386 TTTGCT-GCAGTAACTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
10214703 TGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAATAATACAAGGATCACGTCT
450 TGTGCACTTCGAGTTTGTAGCTGCATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * * * *
10214768 AACAGGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTACAAAATCCCGAACCGTAAAAAGTTT-
515 ACCAAGTTTGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAAT-CCAAACTGTAAAAAATTTC
** * * *
10214832 TGAAGATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
578 AAAAG-TCGT-AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
10214897 CCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCA-AGCAGAAATATGAATATGTGCCT
641 CCATTGTATGAATTTACAA-CCACAAAAAATGGCATTGGCACA-CAGAAATATGAAGATGTGCC-
* *
10214960 AAACCCACCTACAACCTTA
703 AAACCCACCTACCACCCTA
* * * * * *
10214979 TCGATCCACGACTTGCGCATCCTGTCTCTCTGGCTGTCGTAGTGCCCGCCCGC
1 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG-CCCCGCCCGC
10215032 CCACCCGCCC
Statistics
Matches: 1346, Mismatches: 116, Indels: 97
0.86 0.07 0.06
Matches are distributed among these distances:
722 4 0.00
723 14 0.01
724 65 0.05
725 72 0.05
726 91 0.07
727 68 0.05
728 394 0.29
729 164 0.12
730 138 0.10
731 198 0.15
732 122 0.09
733 13 0.01
734 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (721 bp):
TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGCCCCGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCG
GCCGAACGATGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCA
CCAGGGCACCACCGTCGGAGCATGCCGGAGAACCTGACCTACGGCATTGGGGTTCCGACGATCGG
GGGGCGGGGGGTGCGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCAGTAACTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCA
CTTCGAGTTTGTAGCTGCATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCAAACTGTAAAAAATTTCAAAAGTCG
TAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAACCACAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCAAACCCACCTACC
ACCCTA
Found at i:10215250 original size:26 final size:26
Alignment explanation
Indices: 10215221--10215273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10215211 GTTGACTTTG
*
10215221 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
10215247 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
10215273 G
1 G
10215274 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:10216150 original size:26 final size:27
Alignment explanation
Indices: 10216115--10216171 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
10216105 CATGTGTTGA
*
10216115 CTAAGGCATACGGAGTTAATTCCCAGT
1 CTAAGGCATACGGAATTAATTCCCAGT
* *
10216142 CTAA-GCATACGTAATTCATTCCCAGT
1 CTAAGGCATACGGAATTAATTCCCAGT
10216168 CTAA
1 CTAA
10216172 CATCAGCCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (27 bp):
CTAAGGCATACGGAATTAATTCCCAGT
Found at i:10216485 original size:897 final size:896
Alignment explanation
Indices: 10214313--10218659 Score: 5481
Period size: 901 Copynumber: 4.9 Consensus size: 896
10214303 TCGTTTCGTC
* *
10214313 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AATTCATTCCCAGTCTAAGA
* * * * * * *
10214378 TC-GACCAAACCAATGGTTACGGCAGCGCATGCTGAGCTCGAGCATGTGCTGGTGCCGTATTTTT
65 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* * *
10214442 CTTCACCAGGGCACCACCGTCGGAGCATTGCCGGAGAACCTGACCTACGGCATTGGGGTTCCGAC
130 CTTCACCGGGGCACCACCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
10214507 GATCGGGGGG-CGGGGGGTGCGCGTGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
195 GATCGGGGGGCCGGGGGGTGCGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
10214571 GGCCCCCTATCCTTCATCAAAGCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
260 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
10214636 GGTTTGCTACCAGTAACTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
325 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
10214701 CTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAATAATACAAGGATCACGT
390 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * * *
10214766 CTAACAGGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTACAAAATCCCGAACCGTAAAAAGTT
455 CTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTT
* * *
10214831 TTGAAGATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
520 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
10214896 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAATATGTGCCTA
585 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * * *
10214961 AACCCACCTACAACCTTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCTGTCGTAGTGCCC
650 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * * * *
10215026 GCCCGCCCACCCGCCCACTTGTTTTGTCGGTT-GCTTAGGCATACGAAGTTCATT-CCATTCAAA
715 GCCCGCCCTCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
10215089 GATCAGACCAGACCGAGGGTTACGATAGCAG--GATCGGCAGCACGCAGAGGGGGACCC-GCCTG
776 GATCAGACCAGACCGAGGGTT--G-CAGCAGAAGATCGACAGCACGTAGAGGGGGACCCAGCC-G
* * * * * * * * *
10215151 ATCCTCGGCTTATGCATCCGGCCCCTC-GGCCGACTGAGCGTCCGCATGCTTATTTCGTG
837 ATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGACCGTACGCTCATTTCATG
* * * *
10215210 GGTTGACTTTGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAATTCATTCCCAGTCTAAGA
* * * ** * * * * * *
10215275 TCGGATCAGACCGAGTGTTATGGCAACACATGCTGGGCTCAGGCATCTACTGGTGTCGCATTTTT
65 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* * * * * *
10215340 CTTTACCAGGGCACCATCGTCGGAGCATCGCCGAAGAGCCTGACCGACGGCATTGGGGTTTCGAC
130 CTTCACCGGGGCACCACCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * * *
10215405 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTA
195 GATC-GGGGGGCC-GGGGGGTGCGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
** * *
10215470 TTGGCCCCCTATATCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTA
258 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
10215535 TAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTGTTTTCAAATGGTCACAAA
323 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
10215600 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
388 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * *
10215665 GTCTACCAAGTTTGATGCCAAAAATCCTTCCAAAAAAACTTTAAAAAATCTTGAACTGTAAAAAG
453 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAAG
* * *
10215730 GTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAG
518 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
10215795 GGACCATTGTATGAACTTACAAG-CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
583 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
10215859 TAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTATTGC
648 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* *
10215924 CCGTCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
713 CCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * *
10215989 TCGGACCGGACTGAGGGTTGTAGCAGCAAAATTGACAGCATGTAGAGGGGGACCCAGTCGATCCC
778 TCAGACCAGACCGAGGGTTGCAGCAG-AAGATCGACAGCACGTAGAGGGGGACCCAGCCGATCCC
*
10216054 CGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGACCGTACGCTCATTTCATG
842 CGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGACCGTACGCTCATTTCATG
* * * *
10216109 TGTTGACTAAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGTAATTCATTCCCAGTCTAACA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AATTCATTCCCAGTCTAAGA
* ** ***
10216174 TCAG-CCGGATTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTT
65 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* *
10216238 CTTCACCGGGGCACCACCGTCGGAGCATCGCCGGAGAACATGACCGACGGCATTCGGGTTCCGAC
130 CTTCACCGGGGCACCACCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* *
10216303 GATCACGGGGGCCGGGGGGTGCGCGCGCATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATAT
195 GATC-GGGGGGCCGGGGGGTGCGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
10216368 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
259 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
10216433 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
324 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
10216498 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATGCAAGGATCACA
389 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
10216563 TCTACGAATTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACAT-CAAAAAG
454 TCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAAC-TGTAAAAAG
* * * *
10216627 TTTTAAAAATCGTCAAAAAATAGAAAATGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAA
518 TTTTGAAAATCGT-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
10216692 GGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGAATGGAGAAATATGAAGATGTGC
582 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * * * **
10216757 CTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTAGTCGAAATAGTG
647 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * * * * *
10216822 CCTGTCTGCCCTCCCGATCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
712 CCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
10216887 ATCAG-CTCAGATCGAGGGTTGCAGTAGAAGGATC-AGTAGCACATAGAGGGGGATCCAGCCGAT
777 ATCAGAC-CAGACCGAGGGTTGCAGCAGAA-GATCGA-CAGCACGTAGAGGGGGACCCAGCCGAT
** ** * *
10216950 CGTCGGCTTGTGCATCCCGCCCCTCTGGTCAGCTGAGC-ACCCGTACGCT-AGTTTCATG
839 CCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGA-CCGTACGCTCA-TTTCATG
*
10217008 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA-TTCATTCCCAGTCTAAGA
** * * * * *
10217073 TTGGACCGGACCGATGGTTGCGGTAGCACATGCTGGGCTCAGGCATTTGCTGGTGCCGTATTTTT
65 TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
** * * ** * * *
10217138 CTTCGTCGGGGCACCATCGCCGGAGCATCGCCAAACAACCTGACCGGCGGCATTGGGGTTCTGAC
130 CTTCACCGGGGCACCACCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * ** *
10217203 GATTGGGGGGGCCGGGGGGGTTGTGCGAACATGGTGTGCT-ATGGGTGCTGGTACTTGGCCCTTA
195 GA-TCGGGGGGCC-GGGGGG-TGCGCGCGCATGATGTG-TGATGGGTGCTGGTACTTGGCCCTTA
*
10217267 TATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
256 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
** * * * *
10217332 TACAGGTTTGCTGCCAGTAGAAATTAAAGCGTCTGAAATGCGAATACTTTTTTCAAATGGTCACA
321 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
10217397 AAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATC
386 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * ** *
10217462 ACGTCTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-TACGAA-TCGCAA
451 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCT-CGAACT-GTAA
10217525 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
514 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
** * *
10217590 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACTGAAATATGAAGATA
579 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * * *
10217655 TGCCTAAACCCACCTGCCACCCAATCAATCCACGGCTTGCGCATCCCCTCCCTTTGGCCGACGTA
644 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* *
10217720 GTGCCCGCCCG----CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
709 GTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
10217781 AAGATCAGACCAGACCGAGGGTTGCAGCATCAAGATCGACAGCACGAAGAGGGGGACTCGGTCGA
774 AAGATCAGACCAGACCGAGGGTTGCAGCA-GAAGATCGACAGCACGTAGAGGGGGACCCAGCCGA
* * * **
10217846 TCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCG-CC-TACGCTCGTTTTGTG
838 TCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGACCGTACGCTCATTTCATG
*
10217903 GGTTCACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A-G-----A-T--C-G----A-AT
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAATTCATTCCCAGTCTAAGAT
*
10217948 C-G----GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
66 CAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
* * * * *
10218008 TTCATCGGGGCACCA---T-----CA---CCGGAGAACCTGACCGGCGACATTGAGGTT-CTAGC
131 TTCACCGGGGCACCACCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-C
* * ** *
10218061 GATCGGGGGGCC-GGAGG-G-G-G-G--TG-TGCGCACATGGGTGCTGGTACTTGGCCCTAATA-
195 GATCGGGGGGCCGGGGGGTGCGCGCGCATGATGTG-TGATGGGTGCTGGTACTTGGCCCTTATAT
*
10218117 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
259 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
10218182 AGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAA
324 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
10218247 TCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATGACC
389 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * * *
10218312 TCTAGCAAGTTTGCGGCCAAAAATCCTTTCAAAAAAATATTAAAAAATCTAGAACCGTAAAAAGT
454 TCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGT
* * *
10218377 TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAG
519 TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
10218442 GACTATTGTATTAATTTACAAGCCA-AAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCC
584 GACCATTGTATGAATTTACAAGCCATAAAA-ATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
10218506 TAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTC-AGCGTAGTG
648 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG
* *
10218570 CCCACCCGCCCATCCGCTCGCTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTC
712 CCCGCCCGCCC-T-C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* *
10218635 TAAGATCAGACCGGACCCAGGGTTG
773 TAAGATCAGACCAGACCGAGGGTTG
10218660 GGGCAGCACA
Statistics
Matches: 3019, Mismatches: 382, Indels: 140
0.85 0.11 0.04
Matches are distributed among these distances:
846 5 0.00
847 410 0.14
848 28 0.01
851 1 0.00
852 1 0.00
853 2 0.00
854 1 0.00
855 71 0.02
857 10 0.00
858 28 0.01
861 2 0.00
869 69 0.02
873 1 0.00
874 2 0.00
875 1 0.00
879 1 0.00
880 1 0.00
882 1 0.00
883 1 0.00
889 1 0.00
890 1 0.00
891 1 0.00
895 50 0.02
896 15 0.00
897 501 0.17
898 378 0.13
899 391 0.13
900 223 0.07
901 534 0.18
902 287 0.10
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAATTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
TTCACCGGGGCACCACCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
ATCGGGGGGCCGGGGGGTGCGCGCGCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTT
TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
CCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGGTTGCAGCAGAAGATCGACAGCACGTAGAGGGGGACCCAGCCGATCCCCGGC
TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGACCGTACGCTCATTTCATG
Found at i:10217049 original size:26 final size:26
Alignment explanation
Indices: 10217019--10217071 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10217009 GTTGACTTAG
10217019 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10217045 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10217071 G
1 G
10217072 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10219668 original size:692 final size:680
Alignment explanation
Indices: 10217890--10219956 Score: 2667
Period size: 692 Copynumber: 3.0 Consensus size: 680
10217880 TGAGCGCCTA
* * ** * *
10217890 CGCTCGTTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAATCGGACC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACT-GGACC
* ** *
10217954 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG-
65 GAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGT
* * * * * *
10218018 CACCATCACCGGAGAACCTGACCGGCGACATTGAGGTTCTAGCGATCGGGGGGCCGGAGGGGGGT
129 CACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGCCGG-GGGGTGT
* *
10218083 GTGCGC--A---C-ATGGGTGCTGGTACTTGGCCCTAATA-TGGCCCCCTATCCCTCATCAAACC
193 GCGCGCATATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
10218141 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
258 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
10218206 AGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
323 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
10218271 TGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATGACCTCTAGCAAGTTT-GCGGCCAAAAA
388 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGC-GCCAAAAA
* ** *
10218335 TCCTTTCAAAAAAATATTAAAAAATCTAGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAA
451 TCC-TTCAAAAAAATTTTAAAAAATCCCGAA-CGTAAAAAGTTTTGAAAATCATGAAAAATAGAA
* * *
10218400 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACTATTGTATTAATTTACAAGC
514 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
10218465 CA-AAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCG
579 CATAAAA-ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
10218529 ATCCACGGCTTGCGCATCCTGTCTCTCTGGTCAGCGTAGTGCCCACCCGCCCATCCG
643 ATCCACGGCTTGCGCATCCCG--TCTC---T---C----TG----CCCG--CA-CCG
* * *
10218586 CTCGCTCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 --CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGAC
* * * *
10218651 CCAGGGTTGGGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACTTTTTTCTTCGCC-GGG
64 CGAGGGTTGCGGCAGCACATGCTGGGCTCG-GCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* * * * * * **
10218715 TCACCATCGTCGGAGAAGCTGACCGGCTGCATTAGGGTTTCGACGATCGATGGGCCGGGGGGGTG
128 TCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGCC-GGGGGGTG
* * *
10218780 TGCACAG-ATGATGTACGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCGCTATCCCTCATCA
192 TGCGC-GCAT-ATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
10218844 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGTCA
254 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
10218909 TTAAAGTGT-TGGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
319 TTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
10218973 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACAAATTTTGGCGCCA
383 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC-AAGTTTGGCGCCA
* ** *
10219038 AAAATTCTTCCAAAAAATATTTTAAAAAATCCCGAACGATAAAAAGTTGGGAAAATCATAAAAAA
447 AAAATCCTT-CAAAAAA-ATTTTAAAAAATCCCGAACG-TAAAAAGTTTTGAAAATCATGAAAAA
*
10219103 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTA
509 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
10219168 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
574 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
10219233 ATCGATCCACGGGTTACGCATCCCGTCTCTCTG-CCG-A-CG
639 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCGCACCG
* * *
10219272 -GCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATTGGACTGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCG
* *
10219336 AGGGTTGTGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTA
66 AGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCACATTTTTCTTCACC-GGG--
*
10219401 CCTCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGCCGG
127 ----GTC--ACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGCCGG
10219466 GGGGTGTGCGCGCATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
186 GGGGTGTGCGCGCA-TATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
10219531 CATCAAACCTCGAGAACTCATACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGC
249 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
10219596 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGA
314 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
** * *
10219661 GTTTTTAGCTGAATTGTTTTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGG
379 GTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGC
* * * * * *
10219726 GCCAAAACTCCTATCGAACAAATTTTCAAAAATCCCGGACCGTAAAAAGTTTTGAAAATCGTGAA
443 GCCAAAAATCCT-TCAAAAAAATTTTAAAAAATCCC-GAACGTAAAAAGTTTTGAAAATCATGAA
* * *
10219791 AAATAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTATATGAAT
506 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
10219856 TTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATTAAGATGTGCCTAAACCCACCTACCAC
571 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
10219921 CTTATCGATCAACGACTTGCGCATCCCGTCTCTCTG
636 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
10219957 GCCGGCGTAG
Statistics
Matches: 1206, Mismatches: 125, Indels: 83
0.85 0.09 0.06
Matches are distributed among these distances:
683 110 0.09
684 1 0.00
685 2 0.00
686 2 0.00
688 1 0.00
691 194 0.16
692 255 0.21
693 49 0.04
696 2 0.00
697 4 0.00
698 152 0.13
699 5 0.00
700 1 0.00
701 1 0.00
703 1 0.00
705 1 0.00
706 32 0.03
707 209 0.17
708 180 0.15
709 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (680 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTCA
CCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGCCGGGGGGTGTGCG
CGCATATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAGTTTGGCGCCAAAAATCCTT
CAAAAAAATTTTAAAAAATCCCGAACGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGCCCGCACCG
Found at i:10221105 original size:26 final size:26
Alignment explanation
Indices: 10221069--10221118 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10221059 GACTTAGGCA
*
10221069 TACGAAGTTCATTCCTAGTCTAAGCT
1 TACGAAGTTCATTCCCAGTCTAAGCT
*
10221095 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
10221119 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:10221574 original size:899 final size:897
Alignment explanation
Indices: 10219296--10221847 Score: 3792
Period size: 900 Copynumber: 2.8 Consensus size: 897
10219286 TTGGCTTAGG
* * * * *
10219296 CATATGGAGTTCATTCCCTGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAGCACATGCTAGGC
1 CATACGGAGTTCATTCCC-GTCTAAGATCGGACTGGACCGAGGGTTATGGTAGCACATGCTGGGC
* * * *
10219361 TC-AGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTACC-TCGTCGGAGCATCGCCGGAGA
65 TCGA-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
10219424 ACCTGACCGGCGGCATTGGGGTTCCAACGATC-GGGGGGCCGGGGGGTGTGCGCGCATTATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
10219488 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
10219553 CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
10219618 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTGTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * *
10219683 GCACACCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTATCGAACAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTATCGAAAAAA
*
10219748 TTTTCAAAAATCCCGGACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCTTG
454 TTTTCAAAAATCCTGGACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCTTG
*
10219813 CCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTATATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
10219878 TGGCACGCAAAAATATTAAGATGTGCCTAAACCCACCTACCACCTTATCGATCAACGACTTGCGC
584 TGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
10219943 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCACTCATTTCGTCGGTTGGCTTAGG
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * * * *
10220008 GATACGGAGTTCATTCAAAGTCTAATATCAAACCAGACCGAAGGTTGCAGTAGCAAGATTGGCAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAAGATCGACAG
* * *
10220073 TACGCAGAGGGGGACCCAGCCGATCCCTGGCTTGCTCATCCCACCCCTCCGGTCGACTGAGCACC
779 CACACAAAGGGGGACCCAGCCGATCCCTGGCTTGCTCATCCCACCCCTCCGGTCGACTGAGCACC
* * *
10220138 GTACTCTCGTTTCTTGGGTTGACTTAGGCAAGCGGAGTTCATTCCTAGTCTAAA
844 GTACGCTCGTTTCGTGGGTTGACTTAGGCAAGCGAAGTTCATTCCTAGTCTAAA
* * * *
10220192 CATACAGAGTTCATTCCCGATCTAAGATCGAACTAGACCGAGGGTTACGGTAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCG-TCTAAGATCGGACTGGACCGAGGGTTATGGTAGCACATGCTGGGC
* * * * * * * *
10220257 TTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAACATTGCCGGAGCATCGTCAGAGAA
65 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * *
10220322 CCTGACTGGTGGCATTGGGGTTCCGGCGATCGAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * ** *
10220387 CGATGGTTGCTGGAACATGGCCCTTATATTGGCCCTTTACCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10220452 ACCCTCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10220517 GGGGACACTTTTTTTAAAAGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
10220582 TGCATGCCAACAAAAATAGAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTATCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTATCGAAAAA
*
10220647 ATTTTCAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCT
453 ATTTTCAAAAATCCT-GGACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCT
10220711 TGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
10220776 ATTAGCACATATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
582 ATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
10220841 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
10220906 GGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACC-AAGGGTTGCGGCGGCAAGATCGA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTGCAGCAGCAAGATCGA
* * * **
10220970 CAGCACACAAAGGGGGACCC-GACTGATCGCC-GGCTTG-TGCATCCCGCCCCTCTGGTCGGTTG
776 CAGCACACAAAGGGGGACCCAG-CCGATC-CCTGGCTTGCT-CATCCCACCCCTCCGGTCGACTG
* * *
10221032 AGCGCCCGTCCGCTCGTTTCGTGGGTTGACTTAGGCATA-CGAAGTTCATTCCTAGTCTAAG
838 AGC-ACCGTACGCTCGTTTCGTGGGTTGACTTAGGCA-AGCGAAGTTCATTCCTAGTCTAAA
* *
10221093 CTTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGTAGCACATACTGGGC
1 CATACGGAGTTCATTCCC-GTCTAAGATCGGACTGGACCGAGGGTTATGGTAGCACATGCTGGGC
** * *
10221158 TCGAGCATGTGCTGGTGGTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAATCATCGGAGAA
65 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* *
10221223 CCTGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
10221288 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
10221353 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
10221418 GGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
10221483 CATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCC-ATCCGAAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTAT-CGAAAAAA
* * *
10221547 TTTTAAAAAATCCTGGACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTCAAAAATCCTGGACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCTTG
* * * * *
10221612 CCATGAAACTTCAGGTGAAGGCTTAAGGGACGATTGTATTAATTTACAAGCCAGAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
10221677 TGGCACATAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
10221742 ATCCCGTCTCTCTGGACGGCATAGTGCCCGCACAGTCGCCCGCCCGCTCGTTTCATCGATTGGCT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C---CGCCCGCCCGCTCGTTTCGTCGGTTGGCT
10221807 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
10221848 TATAGGGTTG
Statistics
Matches: 1481, Mismatches: 155, Indels: 33
0.89 0.09 0.02
Matches are distributed among these distances:
895 1 0.00
896 87 0.06
897 45 0.03
898 2 0.00
899 482 0.33
900 608 0.41
901 189 0.13
902 2 0.00
903 65 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CATACGGAGTTCATTCCCGTCTAAGATCGGACTGGACCGAGGGTTATGGTAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTATCGAAAAAATT
TTCAAAAATCCTGGACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAAGATCGACAGCA
CACAAAGGGGGACCCAGCCGATCCCTGGCTTGCTCATCCCACCCCTCCGGTCGACTGAGCACCGT
ACGCTCGTTTCGTGGGTTGACTTAGGCAAGCGAAGTTCATTCCTAGTCTAAA
Found at i:10222126 original size:718 final size:716
Alignment explanation
Indices: 10221095--10222469 Score: 2146
Period size: 718 Copynumber: 1.9 Consensus size: 716
10221085 AGTCTAAGCT
* ** * * *
10221095 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGTAGCACATACTGGGCTC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTAGGGAAGCACATACTGGGCTC
*** * * *
10221160 GAGCATGTGCTGGTGGTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAATCATCGGAGAACC
66 GAGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCCAGAGAATCATCGGAGAACC
* * *
10221225 TGACCGGCGGAATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGAT
131 TGACCGGCAGAATTGGGATTCCGACGATCGGAGGGGTCGGGGGGTGTGCGCACATGATGTGCGAT
*
10221290 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* * *
10221355 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG
* *
10221420 ACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGC
326 ACACTTTCTTCAAATGGTCACAAAATCTAGTACACTTCAAGTTTTTAGCTG-ATTTTTTTAGTGC
* *
10221484 ATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATT
390 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCAAAAAAATT
* ** * *
10221549 TTAAAAAATC-CTGGACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTAAAAAATCTC-GAACCG--AAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
* * *
10221613 CATGAAACTTCAG-GTGAAGGCTTAAGGGACGATTGTATTAATTTACAAGCCAGAAAAATGGCAT
517 CATGAAACTTC-GCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATAGCAT
*
10221677 TGGCACATAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
581 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
10221742 ATCCCGTCTCTCTGGACGGCATAGTGCCCGCACAGTCGCCCGCCCGCTCGTTTCATCGATTGGCT
646 ATCCCGTCTCTCTGGACGGCATAGTGCCCGCACAGTCGCCCGCCCGCTCGTTTCATCGATTGGCT
10221807 TAGGCA
711 TAGGCA
* * * *
10221813 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATATAGGGTTGGGGAAGCACAT-GTCGGGCT
1 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTAGGGAAGCACATACT-GGGCT
* *
10221877 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCAGAGAATCGTCGGAGAAC
65 CGAGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCCAGAGAATCATCGGAGAAC
* * *
10221942 CTGACCGGCAGCATTGGGATTCCGACGATTGGAGGGGTCGTGGGGTGTGCGCACATGATGTGCGA
130 CTGACCGGCAGAATTGGGATTCCGACGATCGGAGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
* * * * *
10222007 TGGGTGCTGGTACTTGGCCCTTAAATTTGTCCCTTATCCCTCGTCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
10222072 CCCTTAAAGAGCATTTCAGATTTTACAAGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
* *
10222137 GATACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCAAGTTTTTAGCTGATTTTTTTAGTGC
325 GACACTTTCTTCAAATGGTCACAAAATCTAGTACACTTCAAGTTTTTAGCTGATTTTTTTAGTGC
* * * *
10222202 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
390 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCAAAAAAATT
* *
10222267 TTAAAAAATCTCGAACCGTAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCAT
455 TTAAAAAATCTCGAACCGAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCAT
*
10222332 GAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGC
520 GAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATAGCATTGGC
**
10222397 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATGT
585 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
10222462 CGTCTCTC
650 CGTCTCTC
10222470 ATTGGGGTTC
Statistics
Matches: 595, Mismatches: 58, Indels: 10
0.90 0.09 0.02
Matches are distributed among these distances:
715 1 0.00
716 170 0.29
717 9 0.02
718 414 0.70
719 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (716 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTAGGGAAGCACATACTGGGCTC
GAGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCCAGAGAATCATCGGAGAACC
TGACCGGCAGAATTGGGATTCCGACGATCGGAGGGGTCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG
ACACTTTCTTCAAATGGTCACAAAATCTAGTACACTTCAAGTTTTTAGCTGATTTTTTTAGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCAAAAAAATTT
TAAAAAATCTCGAACCGAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
AAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATAGCATTGGCA
CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGACGGCATAGTGCCCGCACAGTCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGC
A
Found at i:10224110 original size:26 final size:26
Alignment explanation
Indices: 10224073--10224125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10224063 GTTGACTTAG
10224073 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
10224099 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10224125 G
1 G
10224126 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10226638 original size:709 final size:707
Alignment explanation
Indices: 10224847--10226835 Score: 2925
Period size: 709 Copynumber: 2.8 Consensus size: 707
10224837 AGCATCATCA
* * * * *
10224847 GAGAACCTGACCGGCGATATTGGGGTTCCAGCAATCGGGGCGGCCGGGGGGTGTGCGCGCATGAT
1 GAGAACCTGACCGGCGAAATTGGGGTTCCGGCGATC-GGGCGGCCGGGGGGTGTGCGCACATTAT
* * *
10224912 GTGCGATGGGTGCTTGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCATGAA-AAG
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTAT-CCTCATCAAACC-TCAAGAAC
* * *
10224976 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
128 TCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
* ** * * *
10225041 AAATGGGGACATTTTTTTGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAATTTTTT
193 AAATGGGGACACTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
* * *
10225106 TTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAA
258 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
10225171 AGAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
323 AAAATTTTAAAAAATCCTGAACTGTAAAAAGTTT-AAAAATCGTGAAAAATAAAAAACGAGTCGT
* *
10225236 CTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATG
387 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
10225301 GCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTTTCGATCCACGGCTT
452 GCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
10225366 GCGCATCCTGTCTCTCTGGCCGGCGTA------G--TGCCCGCCCGCCCGCTCGTTTCGTCAGTT
517 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAGTC
* * *
10225423 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCACA
582 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACA
*
10225488 TGCTGGGCTCGGGCACGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATTGTCGGAGGTACG
647 TGCTGGGCTCGGGCACGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCA------GA-GTACG
10225553 CCG
705 CCG
** *
10225556 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGCGGTCCAGGGGGTGTGCGCACATTAT
1 GAGAACCTGACCGGCGAAATTGGGGTTCCGGCGATCGGGCGG-CCGGGGGGTGTGCGCACATTAT
*
10225621 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCAAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTAT-CCTCATCAAACCTCAAGAACT
* * * * **
10225686 CACACCCTATTAAAGAGCATTTGAGATTTGATAGGTTTGCTGCCAGTCGCCATTAAAGTAATTGA
129 CACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
*
10225751 AATGGGGACACTTTTTCAAATGGT-AACAAAATCTTGTACACTTCGATTTTTTAGCTGA-TTTTT
194 AATGGGGACACTTTTTCAAATGGTCAA-AAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
* * * *
10225814 TTGTGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTGCTTTCGAA
258 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * *
10225879 AAAATTTGAAAAAATCCTGAACTGCAAAAAGTATTGAAAATCGTGAAAAATAGAAAACGAGTCGT
323 AAAATTTTAAAAAATCCTGAACTGTAAAAAGT-TTAAAAATCGTGAAAAATAAAAAACGAGTCGT
* *
10225944 CTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTTGA-AAGCCCTAAAAA
387 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTT-ACAAGCCATAAAAA
*
10226008 TGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATACACGGC
450 TGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGC
10226073 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAG
515 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAG
** *
10226138 TCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCA
580 TCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
* * *
10226203 CATGTTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCACCGGGGCA-CA-A-T-C-CTCG
645 CATGCTGGGCTCGGGCACGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCAGAGTACGC-CG
* *
10226262 GAGAACCTGACCGGCGAAATTGGGGTTCCGGCGATCGGGAGGCCGTGGGGGGTGGGCGCACATTA
1 GAGAACCTGACCGGCGAAATTGGGGTTCCGGCGATCGGGCGGCC--GGGGGGTGTGCGCACATTA
* * *
10226327 TGTACGATGGGTGCTGGTACTTGGCCATTATATTTGCCCCCTATCCTTCATCAAACCTCCAAGAA
64 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCC-TCATCAAACCT-CAAGAA
10226392 CTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
127 CTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
10226457 GAAATGGGGACACTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
192 GAAATGGGGACACTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
* **
10226522 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTACGGCCAAAACTCCTTTCGA
257 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * *
10226587 AAAAATTTTAAAAAATCCCGAATTGTAAAAAATTTAAAAAATCGTGAAAAATAAAAAACGAGTCG
322 AAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTT-AAAAATCGTGAAAAATAAAAAACGAGTCG
*
10226652 TGTTG-CATTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
386 TCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
10226716 TGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGC
450 TGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGC
**
10226781 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTACCCGCCCGCTC
515 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTC
10226836 TTCGTCGGAG
Statistics
Matches: 1156, Mismatches: 100, Indels: 49
0.89 0.08 0.04
Matches are distributed among these distances:
705 3 0.00
706 44 0.04
707 71 0.06
708 425 0.37
709 479 0.41
710 1 0.00
715 1 0.00
716 2 0.00
717 130 0.11
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (707 bp):
GAGAACCTGACCGGCGAAATTGGGGTTCCGGCGATCGGGCGGCCGGGGGGTGTGCGCACATTATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCTCATCAAACCTCAAGAACTCA
CACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
TGGGGACACTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCTGAACTGTAAAAAGTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCAGTCGGCT
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCT
GGGCTCGGGCACGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCAGAGTACGCCG
Found at i:10227636 original size:26 final size:26
Alignment explanation
Indices: 10227606--10227658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10227596 GTTGACTTAG
*
10227606 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10227632 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10227658 G
1 G
10227659 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10229421 original size:26 final size:26
Alignment explanation
Indices: 10229385--10229437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10229375 GTTGACTTAG
10229385 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
10229411 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
10229437 G
1 G
10229438 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:10230316 original size:26 final size:26
Alignment explanation
Indices: 10230287--10230339 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10230277 GTTGACTTAG
* *
10230287 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTCCATTCCCACTCTAA
*
10230313 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCACTCTAA
10230339 G
1 G
10230340 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCACTCTAA
Found at i:10230718 original size:901 final size:899
Alignment explanation
Indices: 10226842--10232813 Score: 7654
Period size: 893 Copynumber: 6.7 Consensus size: 899
10226832 GCTCTTCGTC
* * * *
10226842 GGAGCATCGCCGGAGAACCTGACTGACGACATTGGGGTTCCGACGATCGGGTGGGCAGGGGGGTG
1 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGTG
* * *
10226907 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAG
65 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
10226972 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
130 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
10227037 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTACGAGTTTTT
195 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
10227102 AGCTGCATTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAA--TTTCGGGGCCA
260 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTC--GGCCA
* * * ** *
10227165 AAACTCCATCCAAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
323 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
10227230 AAAAAACGAGTCGTCTTACCATGAAACTTCACTTGAAGGCTTAAGGGACCGTTGTATGAATTTAC
388 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*** *
10227295 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGCAGATGTGCCTAAACCCACCTACCACCCTA
453 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
10227360 TCGATCCACGGCTTGTGCATCCCGTCACTTTGGCCTGCGTAGTGCCCGCCAGTCCGCCCGCCCGC
518 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GT-CGCCCGCCCGC
* * * * * * *
10227425 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGAAG
581 TTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGG
* * * * ** * * *
10227490 GTTGCGGCAGCAAGGATTGGCAGCACGTAGAGTGGGACCC-TTTCGATCCCCGACTTGTGCATCC
646 GTTGCGACAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGACT-AATCCCCGGCTTGCGCATCC
* * * * * *
10227554 TGCCCCTCTGGCCGGCTAAGCGTCCGCATGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
709 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
10227619 ATTCCCTGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGC
774 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGC
* *
10227684 AGCACATGCTGGGCTCGGGCAGGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT--C-
838 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
* * * *
10227743 ---G--T---CGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTG
1 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGTG
* * * *
10227800 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCATTATGTTGG-CCCTTATCCCTCATCAA
65 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
10227864 ACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA-CGCA
130 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CA
* * * * *
10227927 TTAAAGTGTTTGATATGGGGATATTTTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAGTTTT
194 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
10227991 TATCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTC-ACCA
259 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-TCGGCCA
* * * *
10228055 AAACTCCATCCGAAAAAATTATAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGA-GAAAAA
323 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA-TCATGAAAAA
10228119 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
387 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
10228184 CAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
452 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
10228249 ATCAATCCACAGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCACC--CGCCCGCCGTCC
517 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCG-C--CC
* * * * * * *
10228312 GCTCGTTTCGTTAGTTGGCTTCGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAATCAA
579 GCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA
* * ** **
10228377 GGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGAAACCCGACCGATCCCCGGCTTGCGCATCC
644 GGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTAATCCCCGGCTTGCGCATCC
**
10228442 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACATAGTTC
709 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
10228507 ATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGT
774 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGC
* *
10228572 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-T
838 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
* * ** * *
10228633 CGGAGCATTGCCGGAGAACCTGACTGATTGCATTGGGGTTTCGACGATTGGGGGGGCTGCGGGGG
1 -GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC--CGGGGG
* * *
10228698 -GTGTGCACATGATGTGCGATGGGTG-TGGTACCTGGCCCTTATATTGGCCCTCTATCCCTCATC
63 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
10228761 AAACCTTGAGAACTCACACACCCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCT
128 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
10228825 ATTAAAGTATCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
193 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * **
10228890 TTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAATGATCATGTCTACCAAG-TTGGGGCCA
258 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTCGGCCA
* *
10228954 AAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
323 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
10229019 AGAAAATGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
388 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
10229084 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCTTA
453 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
10229149 TCGATCGATGGCTTGCACATCCCGTCTCTCTGGTCGGCGTAGTGCCCG-C-T----CGCCCGCTC
518 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCGCCCGCTT
** * * * **
10229208 GTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGA-TAAGGGT
583 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGT
* ** * * * **
10229272 TGCGGCAGCAGGATCGATAGCATGCAGAGGGGGACCCG-GTCAATCCCCGGCTTTCGCATCTTGC
648 TGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACT-AATCCCCGGCTTGCGCATCCCGC
* *
10229336 CCCTCTGGCCGGCTGAGCGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
712 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
10229401 CCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGC
777 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGACCGAGGGTTGCGGCAGC
* * * * **
10229466 ACATGCTGGGCTCGGGCATTTGTTGGTGTCGTATTTTTCTTCGTCGGGTTACCATCGCT
841 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
* * * ** * *
10229525 GGAGCTTCACCGGAGAACCTGACCGGCGTTATTAGGGTTCTGACGATC-GGGGGGCCGGGAGGTG
1 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGTG
* * * * **
10229589 TGTGCAGATGATGTGCCATGGGTGCTGGTACTTGGCTCTTATATTTTCCCCCTATCCCTCATCAA
65 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
10229654 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACGGCCAGTAGCCAT
130 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
10229719 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGGTTTT
195 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* ** *
10229784 AACTGAATTTTTTTGTGCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTTCGGCCAAA
260 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTCGGCCAAA
* * * *
10229849 ACTCCTTCCGAAAAACTTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAG
325 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
10229914 AAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
390 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
10229979 GCCATAAAAATGGCATTGGCACGCACAAATATGAAGATGTACCTAAACCCACCTACCACCCTATC
455 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
10230044 GATCCATGGCTTGCGCATACCGTCTCTCTGGCCGGCGTAGTGCCCGTCTGGTAGCCCGCCCGCTT
520 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CGTCGCCCGCCCGCTT
**
10230109 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGT
583 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGT
* * * *
10230174 TGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGACTGATCCCCGGCATGCGCATCCCGCC
648 TGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTAATCCCCGGCTTGCGCATCCCGCC
* *
10230239 CCTCTGACCGGCTGAGCGCCCGCACGTTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATT
713 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
10230303 CCTACTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCAGATCAGACCGAGGGATGTGGCAGC
777 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGC
**
10230368 ACATGCTGGGCTCGGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGCT
841 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
* * * * * *
10230427 GAAGTATCGCCAGAGAACCTAACCGGCGGCATTGGGGTTCCGACTATCGGGGGGGCCGGGGGTGT
1 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGT
* * *
10230492 GCGCACAT-ATGTACGATGGGCGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAA
66 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
** * *
10230556 CCTCGAGAACTCATGCCCCCTTAAAGGGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATT
131 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
10230621 CAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
196 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
10230686 GTTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG-TTT-GGCACCAA
261 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTCGG--CCAA
* * *
10230749 AACTCCTTTCGAAAAAATTTTAAAACATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
324 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
*
10230814 GAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
389 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** * * *
10230879 ATTCAT-AAAATGGCATTGACACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAAT
454 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
10230943 CGATCCACGACTTGCGTATCCCGTCTCTCTGGCCGGCGAAGTGCCCGCC--CGCCCGCCTGCTGG
519 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCGCC--C--G
* *
10231006 CTTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCCAAGATCAGACCGAAC
580 CTTG----TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAAC
* * * * * * *
10231070 CGAGGGTTGTGGCATCAGGATCGGCTGTACGCAGAGGGGGACCCAAGC-AATCCTCGGCTTGCGC
641 CGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CTAATCCCCGGCTTGCGC
** * * *
10231134 ATCCCGCCCCTCTGGTTGGCTGAGCGCCCGTACGCTCGTTTCCTGGGTTGACTTGGGCATACGGA
705 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
10231199 GTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-G---GACCGAGGGCTGC
770 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGC
* * * *
10231239 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCACC
835 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
* *
10231304 GGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
1 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGTG
10231369 TGCGCAC---A--T--GA-------T-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
65 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
10231419 ATCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
130 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
10231484 TAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTT
195 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTT
* * * * *
10231547 TAGCTGAATTTTTTTGTGTATGCCAATAAAAATACGAGGATCATGTCTACCAA-TTTTGGGGCCA
259 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTT-CGGCCA
* * *
10231611 AAACTCCATT-C-AAAAAAATTTAAAAAATCTAGAACCATAAAAAGTTTCAAAAATCATGAAAAA
323 AAACTCC-TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
10231674 TAGAAAACGAGTCATCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
387 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
10231739 CAAACCATAAAAATTGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCT
452 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
10231804 ATCGATCCAAGGCTTGTGCGTCCCGCCTCTCTGTCCGACGTAGT----GCC--CGCCCGTCCGCT
517 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCGCCCGCT
* * *
10231863 TGTTTCATC-GATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
582 TGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGG
* * * * * * * *
10231927 GTTG-TAGCAACAGGATCGGCAGCACGTAGAGGGGGACTCGACCAATTCCCGGCTTACGCATCTC
646 GTTGCGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTAATCCCCGGCTTGCGCATCCC
* * *
10231991 GCCCCTCTGGCCGGTTGAGCGTCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCA
710 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
10232056 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTACGGCA
775 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCA
* * * * * *
10232121 GAACATGCTGGACTCGGGCATGTGCTAGTGCTGCATTTTTCTTC-TCTGGGGCAACATC-AT
839 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCT
** *
10232181 CGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGT
1 -GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGT
* *
10232245 GTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCA
64 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
10232310 AACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCA
129 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
10232375 TTAAAGTATCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
194 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * **
10232440 TAGCTG-ATTTTCTGTATGCAT-CCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCA
259 TAGCTGAATTTT-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTCGGCCA
* *
10232503 AAACTCCTTACGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
323 AAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * * *
10232567 TAGAAACCGTGTCATCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
387 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
10232632 CAAGCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
452 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * **
10232697 ATCGATCCACAGCTTGCGCATCCCGTTTCTCTGGCCAGCGTAGTGCCCGCCCGTTCGACCGCTTG
517 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-TCGCCCGCCCG
*
10232762 -TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
580 CTT-GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
10232814 GGATCGGACC
Statistics
Matches: 4429, Mismatches: 509, Indels: 266
0.85 0.10 0.05
Matches are distributed among these distances:
850 1 0.00
851 31 0.01
852 143 0.03
853 2 0.00
854 1 0.00
855 6 0.00
856 1 0.00
857 1 0.00
859 10 0.00
862 115 0.03
863 182 0.04
864 122 0.03
865 4 0.00
867 1 0.00
872 2 0.00
873 1 0.00
874 2 0.00
876 1 0.00
877 143 0.03
878 121 0.03
880 1 0.00
881 1 0.00
882 2 0.00
884 2 0.00
886 6 0.00
887 1 0.00
888 213 0.05
889 70 0.02
890 319 0.07
891 408 0.09
892 397 0.09
893 580 0.13
894 2 0.00
895 2 0.00
896 9 0.00
897 2 0.00
898 26 0.01
899 393 0.09
900 188 0.04
901 455 0.10
902 272 0.06
903 152 0.03
904 38 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTCGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGTCGCCCGCCCGCTTGTT
TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGC
GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTAATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT
Found at i:10232078 original size:26 final size:26
Alignment explanation
Indices: 10232042--10232094 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10232032 CTTGACTTAG
10232042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10232068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10232094 G
1 G
10232095 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10234628 original size:26 final size:26
Alignment explanation
Indices: 10234597--10234675 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
10234587 GTTGACTTAG
10234597 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
10234623 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
* *
10234649 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10234675 G
1 G
10234676 ATCGGACTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:10236017 original size:903 final size:901
Alignment explanation
Indices: 10232914--10237190 Score: 5532
Period size: 903 Copynumber: 4.7 Consensus size: 901
10232904 TCATCGGAGC
* * *
10232914 ATCGTCGGAGAATTACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGAGGCTGG
1 ATCGTCGGAGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGG
**
10232979 TTAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
66 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
10233044 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTT-CTGCCA
130 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
10233108 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
195 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
10233173 GAGTTTTTAGCTGATATTTTCTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
260 GAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
10233238 GGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAAATCAT
325 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCAT
* *
10233302 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATG
389 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
10233367 AATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTACCTAAACCCACCTAC
454 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
10233432 CACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCACGTCCGTC
519 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCG-C
* ** * *
10233497 TGCC-CGCTCGTTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAATATC-GACC-
583 --CCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * *
10233559 GACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCTAACCGATCCCGTCTTGTG
646 GACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATCCCGGCTTGCG
* *
10233624 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGACATACGG
711 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** * * * *
10233689 AGTTCATTCCTAGTCTAAGCGAACAGAGTTCGTTCCCAATCTAAGATCAAACC-AGACCGAGGGT
776 AGTTCATTCCCAACCCAAGCAAACAGAGTTCATTCCCAATCTAAGATCGAACCGA-ACCGAGGGT
* * * * **
10233753 TGCAGTAGCACATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCGTCAGGGCACG
840 TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACG
* *
10233815 ATCGTCGGAGTATCACCGGAGTATCGTCGGTGAACCTGACCGGTAGCATTGGGGTTCCGACGATC
1 ATCGTCGGAGTATCACCGGAG-AAC--C--TG-ACC-GA-C-G--GCATTGGGGTTCCGGCGATC
* * * *
10233880 GGGGGGG-TCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACATGGCCCTTATGTTG
55 GGGGGGGCT-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
10233944 GCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
119 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
10234009 GTTTGCTGCCAGTAGCCATTAAAATGTTTAAAATGGGGACACGTTTTTCAAATGGTCACAAAATC
184 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
10234074 TTGTGCACTTCGAG-TTTTAGGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGT
249 TTGTACACTTCGAGTTTTTA-GCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
10234138 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCAAACCATAAAAAGTT
313 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * *
10234203 TCAAAAATCCTGAAAAATAAAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGG
378 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
10234268 ACCATTGTATGAATTTACAAGCCATAGAAATGGAATTGGCACGCAAAAATATGAAGATGTGCCTA
443 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * *
10234333 AACCCACCTACCACCCTATCGATGCATGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTGCCC
508 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * * * *
10234398 ACCCGTCCGCCCGCCTGTTCGTTTGGTCGGTTAGCTTAGGCATATGGAGTTCATTGCCAGTCTAA
573 GCCCGTCCGCCCG-CT-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * ** * * *
10234463 GATTGGATCGGATCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGACGGGGA-CCGACCAATC
636 GATCAGACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATC
* * * * *
10234527 CCTAGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATTGTGGTTGA
701 CC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC-GTG-GGTTGA
10234592 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTGCATTCCTAGTCTAAGCATACAG
763 CTTAGGCATACGGAGTTCATTCC----C-AA-C---C------CA-----AG-C--A--A-ACAG
* * * * **
10234657 AGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCACATGCTACGCTCGGGCA
802 AGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * * *
10234722 CGTGCTGGTGCTGCATTTTTCTTCGCCAGGGCACC
867 TGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACG
* * ** * * * * *
10234757 AACGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGGTCAGGAGGGC-CG
1 ATCGTCGGAGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGG
* * *
10234821 GGGGGTATGCGGACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
66 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
** *
10234886 TCATCAAACCTATAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
131 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
10234950 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACATCG
196 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
10235015 AGTTTTTAGTTGATATTTTATGTGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
261 AGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
*
10235080 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAACTTTCAAAAATCATG
326 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATG
* *
10235144 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGA
390 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
10235209 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCTACC
455 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
10235274 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGTCCGCCC
520 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCC
* * * * * *
10235339 TGTTCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAATATCAGACCAGAC
585 -GCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * *
10235404 CGAGTGTTGCGACAGCAAGATTGGCAACACGTAGAGGGGGACCCAACCGATCTCCGGCTTGCGCA
649 CGAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATC-CCGGCTTGCGCA
* * * *
10235469 TCCCGCCCCTTTGGCCGACTGAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAG
713 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
10235534 TTCATTCCCAACCCAAGCAAACAGAGTTCATTCCTAATCTAAGATCGGACTGGACCGAGGGTTGC
778 TTCATTCCCAACCCAAGCAAACAGAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGC
* * * * * * *
10235599 GGTAGCACATGTTGGGATCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCATG
843 AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACG
* * * *
10235658 ATCGTCGGAGTATGATCGGAGAACCTGATCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCTGA
1 ATCGTCGGAGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTG-
* * * *
10235723 GGGGGGTGTGTGCTCATGACGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCC
65 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
10235788 CTCATCAACCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCA
130 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
10235853 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
195 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
10235918 GAGTTTTTAGCTGATTTTTTTTATGCATGCCAACAAAAATACAGGGATCAAGTCTA-CAAGTTTG
260 GAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
10235982 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGGTTT-AAAAATCGT
325 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCAT
*
10236046 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
389 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
10236111 AATTTACAAGCCATAAAAAT-GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGC
454 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * *
10236175 TACTCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGTCCGCCCACC
519 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCC-GC
* * * * * * *
10236240 CTCGCACTTGTTTCGTCGGCTGGCATAGGCATACGGAGTTTATTCCCAGTCTAAGATTAGATCGG
583 C-CGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * **
10236305 ACTGAGGGTTACGACAGTAGGATCGGTAGCATGCAGAGGAGGACCCGGCCAATCCTCGGCTTGCG
647 ACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATCC-CGGCTTGCG
* * * * *
10236370 CATCCAGCCCCTATGGTCGACTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
711 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * * * * *
10236435 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAATCTAAGATCGAACCGAACTGAGGGTT
776 AGTTCATTCCCAACCCAAGCAAACAGAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTT
*
10236500 GTAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGG---G
841 GCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACG
* * * * * * * *
10236557 --C-AC--A--ATCACCGGAGAACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGCGAC-CG
1 ATCGTCGGAGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGG
* * *
10236614 GGGGGTGTGCGCACATGATGTGAGATCGGTGCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCC
66 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
10236679 CCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
131 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
10236744 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCG
196 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
10236809 AGCTTTTAGCTGATTTTTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTT
261 AGTTTTTAGCTGA--TTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
10236874 GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGT
324 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
10236939 GAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
389 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
10237004 AATTTACAGGCCATAAAATTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
454 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * **
10237069 CACCCTGTCAATCCTCGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCATGCCCG-CCTGC
519 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCC-GC
* *
10237133 CCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
583 CCGCTC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
10237191 GGATCGGATC
Statistics
Matches: 2944, Mismatches: 362, Indels: 148
0.85 0.10 0.04
Matches are distributed among these distances:
890 192 0.07
892 89 0.03
893 194 0.07
894 92 0.03
896 1 0.00
897 1 0.00
899 1 0.00
901 160 0.05
902 101 0.03
903 482 0.16
904 155 0.05
906 3 0.00
907 5 0.00
908 2 0.00
909 3 0.00
910 1 0.00
911 122 0.04
912 423 0.14
913 13 0.00
914 82 0.03
915 2 0.00
916 28 0.01
918 1 0.00
921 2 0.00
922 2 0.00
923 1 0.00
925 1 0.00
927 29 0.01
928 83 0.03
929 443 0.15
930 87 0.03
931 23 0.01
933 1 0.00
934 1 0.00
935 2 0.00
936 5 0.00
937 3 0.00
939 1 0.00
941 3 0.00
942 103 0.03
943 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
ATCGTCGGAGTATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCG
CTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
AGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAACCCAAGCAAACAGAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGCAGC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACG
Found at i:10236456 original size:26 final size:26
Alignment explanation
Indices: 10236427--10236479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10236417 GTTGACTTAG
*
10236427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
10236453 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10236479 G
1 G
10236480 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10237848 original size:8 final size:8
Alignment explanation
Indices: 10237835--10237864 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
10237825 CCGAGGTAGT
*
10237835 GCCCGCCC
1 GCCCGCCA
10237843 GCCCGCCA
1 GCCCGCCA
10237851 GCCCGCCA
1 GCCCGCCA
10237859 GCCCGC
1 GCCCGC
10237865 TTGCTTCGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.07, C:0.67, G:0.27, T:0.00
Consensus pattern (8 bp):
GCCCGCCA
Found at i:10238944 original size:26 final size:26
Alignment explanation
Indices: 10238906--10238958 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10238896 GTTGACTTAG
** **
10238906 GCATACGGTGTTCATTCGTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10238932 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10238958 G
1 G
10238959 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10239116 original size:185 final size:184
Alignment explanation
Indices: 10238748--10239165 Score: 536
Period size: 185 Copynumber: 2.3 Consensus size: 184
10238738 GTTGGCTTAG
* * * * ** * * * * * *
10238748 GCATACGGAGTTCATTCCCAGTTTTAGATTGGACCAGACCAAGGGTTGCGGTAGCAGGATTGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAACAAGATCGACA
* *** * * *
10238813 GCATGCAGAGGGGGACCCGGTTGATCCTCATATTATGCATCCGCCCCTCTGGCCAGCTGAGCGCC
66 GCACGCAGAGGGGGACCCGACCGATCCTCATATTACGCATCCGCCCCTCTAGCCAGCTGAGAGCC
* * **
10238878 CGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGTGTTCATTCGTAGTCTAA
131 CGCACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
10238932 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAACAAGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAACAAGATCGACA
*
10238997 GCACGCAGAGGGGGACCCGACCGATCC-C-TGACTTACGCATCCCGCCCCTCTAGCCGGCTGAGA
66 GCACGCAGAGGGGGACCCGACCGATCCTCAT-A-TTACGCAT-CCGCCCCTCTAGCCAGCTGAGA
*
10239060 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
128 GCCCGCACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
10239117 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGC
10239166 GGCATCACAT
Statistics
Matches: 203, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
182 1 0.00
183 2 0.01
184 83 0.41
185 117 0.58
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGCAACAAGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCTCATATTACGCATCCGCCCCTCTAGCCAGCTGAGAGCC
CGCACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10239121 original size:26 final size:26
Alignment explanation
Indices: 10239091--10239143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10239081 GTTGACTTAG
*
10239091 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10239117 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10239143 G
1 G
10239144 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10245637 original size:26 final size:26
Alignment explanation
Indices: 10245601--10245653 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10245591 GTTAACTTAG
10245601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10245627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10245653 G
1 G
10245654 ATCAAAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10246876 original size:882 final size:880
Alignment explanation
Indices: 10244736--10247250 Score: 3229
Period size: 885 Copynumber: 2.8 Consensus size: 880
10244726 AGGCATACGG
* * * *
10244736 AGTTCATTCTCAGTCTAAGATCAGACCAGACGAAGGATTCTGGGAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACG-AGGGTTC-GGCAGCACATGCTGGGCTCGGGCA
* * * *
10244801 TGTGTTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACC
64 TGTGCTGGTGCCGTATTTTTCTTC-ACCGGGCACCATCGCCAGAGCATC-TCGGAGAACCTGACC
* *
10244866 GACGGTATTGAGGTTCCGGTGATCGGGGGGTCGGGGTGGGTGTGCGCACATGATGTGCAATGGGT
127 GACGGTATTGGGGTT-C-GT-ATC-GGGGGTCGGGG-GGATGTGCGCACATGATGTGCAATGGGT
* *
10244931 GCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCGT
187 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
10244996 AAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
252 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC
* *
10245061 TTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTTGCTGAA-TTTTTGTGCATGCCA
317 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCA
* * ** * *
10245125 ACAAAAATACAAGGACCACGTCTACCAAGTTTAGATCTGAAACTCCTTTTGAAAAAA-TTTAAAA
382 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCT-AAAAAATTTTAAAA
** * *
10245189 AATTCTTGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
445 AA-TCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
** * *
10245254 ACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTT-CAAAGCCACAAAAAATGGCATTGGCA
509 ACTTCACGTGCGGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCA-TAAAAATGGCATTGGCA
* * * *
10245318 TGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGGATCCC
572 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * *
10245383 GTCTCTCTGGCTGGCGTAGTGCCCGCCCGGCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGGATAC
637 GTCTCTCTGGC-GGCGTAGTGCCCG-CC-GCAG--C-TT-GTTTCGTCGGTTGGCTTAGGCATAC
* * * *
10245448 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCAGGATCAGCAGCACGT
695 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG-AGTAGCAGAATCAGCAGCACGC
* * * *
10245513 AGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCAACTAAGCGCCCGCAC
759 AGAGGGGGACCAGACCGATCCACGACTTACGCATACCGCCCCTCTAGCCAACTAAGCGCCCGCAC
* * * *
10245578 GTTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
824 GCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCACACGA
* ** * *
10245635 AGTTCATTCCCAGTCTAAGATCAAAATGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTT-CGGCAGCACATGCTGGGCTCGGGCA
* * * *
10245700 TGTGCTGGTGCTGCATTTTTCTTCACCGGAGCACCATCGCCGGAGCATCTCCGGAGAATCTGACC
64 TGTGCTGGTGCCGTATTTTTCTTCACCGG-GCACCATCGCCAGAGCATCT-CGGAGAACCTGACC
* * * * * *
10245765 -AGCGGCATTAGGGTTC----CGGCGATC-GGGGGAGTGTGCGCATAAGATGTGCAATGGGTGCT
127 GA-CGGTATTGGGGTTCGTATCGGGGGTCGGGGGGA-TGTGCGCACATGATGTGCAATGGGTGCT
*
10245824 GGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
190 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* ** *
10245889 GAGCATTTGAGATTTTATAGGTTTGAAGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
255 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
* *
10245954 TTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCCA-
320 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAC
* *
10246018 AAAAATACAAGAATCATGTCTACCAA-TTTGGGGCAAAACTCCTTCCTAAAAAATTTTAAAAAAT
384 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTT-CTAAAAAATTTTAAAAAAT
* * * *
10246082 CCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCACGAAACTT
448 CCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
10246147 CACGTGCGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
513 CACGTGCGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
*
10246212 AATATGAAGATGTGCCTAAACCCACCTACCACCCTA-CTGATCCTCGACTTGCGCATCCCGTCTC
578 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGACTTGCGCATCCCGTCTC
* *
10246276 TCTGGTCGGCATAGTGCCCG-C-CAGCTTGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTC
642 TCTGG-CGGCGTAGTGCCCGCCGCAGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
10246339 CCAGTCTAAGATCGGACTGGACCAAGGGTGTG-GTAGCCGAATCGGCAGCACGCAGAGGGGGAGC
706 CCAGTCTAAGATCGGACCGGACCAAGGGT-TGAGTAGCAGAATCAGCAGCACGCAGAGGGGGACC
* * * ** *
10246403 AG-TCGATCCACGGCTTGCGCA-ACC-CCCCTCTAGCCAGTTTAGCGCCCGCACGCTCGTTTCGT
770 AGACCGATCCACGACTTACGCATACCGCCCCTCTAGCCAACTAAGCGCCCGCACGCTCGTTTCGT
* *
10246465 GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGTACACGA
835 GGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCACACGA
* * * *
10246511 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGTGGGTTACGGTAGCACATTCTGGGC-CTGGGC
1 AGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTT-CGGCAGCACATGCTGGGCTC-GGGC
* * * * *
10246575 ATGTGCTAGTGCCATATTTTTCTTCCCCGGGCCACCATCCCCCGAGCATCATCGGAGAACCTGAC
63 ATGTGCTGGTGCCGTATTTTTCTTCACCGGG-CACCATCGCCAGAGCATC-TCGGAGAACCTGAC
*
10246640 CGACGGTATTGGGGTTCTGATAATCGGGGGTCGGGGGGATGTGCGCACATGATGTGCGATGGGTG
126 CGACGGTATTGGGGTTC-G-T-ATCGGGGGTCGGGGGGATGTGCGCACATGATGTGCAATGGGTG
* ** *
10246705 CT-GTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTAAGAACTCACACCCCATTA
188 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
10246769 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
253 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
* * * *
10246834 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGATTTTTTTTGTGAACGCCA
318 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCA
* **
10246899 AGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATTGGAAAAAATTTTAAAA
382 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCC-TTCTAAAAAATTTTAAAA
* * *
10246964 AATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
445 AATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
** *
10247029 CTTCAC-T-CGAACACTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
510 CTTCACGTGCG--GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
10247092 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGACTTACGCATCCCT
573 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCG
* * *
10247157 TCTTTCTGGCCGACGTAGTGCCCGCCTGCCCGCTAGCTTGTTTCATCGGTTGGCTTAGGCATACG
638 TCTCTCTGG-CGGCGTAGTG--C-CC-G-CCGC-AGCTTGTTTCGTCGGTTGGCTTAGGCATACG
* * *
10247222 AAGTTCATTTCGAGTCTAAGATCGGACCG
696 GAGTTCATTCCCAGTCTAAGATCGGACCG
10247251 AAGGTTACGA
Statistics
Matches: 1409, Mismatches: 165, Indels: 90
0.85 0.10 0.05
Matches are distributed among these distances:
875 2 0.00
876 191 0.14
877 4 0.00
878 15 0.01
879 28 0.02
880 59 0.04
881 4 0.00
882 176 0.12
883 59 0.04
884 16 0.01
885 209 0.15
886 4 0.00
887 2 0.00
888 96 0.07
889 114 0.08
890 209 0.15
891 30 0.02
892 16 0.01
893 54 0.04
898 6 0.00
899 112 0.08
900 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (880 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGTATTTTTCTTCACCGGGCACCATCGCCAGAGCATCTCGGAGAACCTGACCGACG
GTATTGGGGTTCGTATCGGGGGTCGGGGGGATGTGCGCACATGATGTGCAATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCTAAAAAATTTTAAAAAATCCCGAACC
GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGCG
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCGGC
GTAGTGCCCGCCGCAGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCGGACCAAGGGTTGAGTAGCAGAATCAGCAGCACGCAGAGGGGGACCAGACCGATCCA
CGACTTACGCATACCGCCCCTCTAGCCAACTAAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTA
GGCATACAGAGTTCATTCCCAGTCTAAGCACACGA
Found at i:10248869 original size:26 final size:26
Alignment explanation
Indices: 10248833--10248885 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10248823 GTTGACTTAG
*
10248833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
10248859 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10248885 G
1 G
10248886 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10249760 original size:26 final size:26
Alignment explanation
Indices: 10249730--10249782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10249720 GTTGACTTAG
* *
10249730 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
10249756 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
10249782 G
1 G
10249783 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:10250445 original size:899 final size:897
Alignment explanation
Indices: 10247963--10252859 Score: 6784
Period size: 901 Copynumber: 5.4 Consensus size: 897
10247953 GTTGACTTAG
* * * ** * * *
10247963 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCATATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
** * * * * *
10248028 CTCAGGCATGTGCTGGTGTCATATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGCCGGAGA
10248093 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
10248157 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGACCTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
10248222 ACCCCCTTAAAGAGCATTTGAGATTTAACAGGGTTGCTGCCAGTAGCCATGAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10248287 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACGTTGAGTTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTTTTAGCTGAATTTTTTT
* ** * * *
10248352 GTTCATGCCAACAAAAATACAAGGATCACGTCTAAAAATTTTGGGGCCAAAACGCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * ** *
10248417 AATTTTAAAAAATCCTGAACCGTAAAAAAGTTTCAAAAATGGTGAAAAATAGAAAAACGAGTCGT
453 AATTTTAAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACAAGTCGT
*
10248482 CTTGCCATGAAACTTCACACGAAGGCTTAAAGGACCATTGTATGAATTT---A--C-----AATG
516 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
10248537 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
10248602 ACGTATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCACTCGTTTCATCGGTT
646 GCGCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTCGTCGGTT
* * * *
10248667 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGTTTGCAGTAACAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG-GTGCAGCAGCAGG
* * * ** *
10248732 ATCGCCAGCACGCAGAAGGGGACACGACCGATCCCCGGCTAATGCATCCCGCCCCTCTGGCCGGC
771 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGAC
10248797 TGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
10248859 GCATACGGAGTTCATTTCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* * * * *
10248924 CTC-GAGCATGTGTTGGTGCCGCATTTTTCTTCATCGGCGCACCATCGTCGGAGCATCGCCGAAG
66 CTCAG-GCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAG
* * * *
10248988 AACCTGACCGACGACATTGGGGTTCCGACGAT-AGGGGGCCGGGGGGGTGTGTGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
10249052 CGATGGGTGCTGGTGCTCGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10249117 ACCCCCTTAAACAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
10249182 GGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTTGACTTTTTATCTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * **
10249247 TGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCTGAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
** * *
10249312 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
* *
10249377 GCCATGAAACTTCACACGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGAA
519 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
10249442 TTGGCATGCAAAAATATGAAGATTTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCA
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
10249507 CATCCCGCCTCTCTGGCCGGCGTAGTG-CCTCCTGCCCGCCCGCTCGTTTCGTCGATAGGCTTAG
649 CATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
10249571 GCATACGGAGTTAATTCCCACTCTAAGATCAGACTGGATTGAGGGCTGCAGCAGCAGGATCAACA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG-TGCAGCAGCAGGATCGACA
* ** ** * *
10249636 GTACGCAGAGGGGGACCCGACCGATCCTTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
778 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGT
* * *
10249701 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10249756 GCATACGGAGTTCATTCACAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* * * **
10249821 CTCGGGCATGTGGTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCGAGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCG-GAGCATCGCCGGAGA
* *
10249886 ACCTGACCGGTGGCATTGGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
10249951 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
10250016 ACCCCCTGAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10250081 GGGGACACTTTTTTCAAATGGTTACCAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTTT
* * *
10250146 -TTCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
10250210 AATTTGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTTGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
10250275 TGCCATGAAACTTCACACGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10250339 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
10250404 GCATCCCGCCTCTCTGGCCGGAGTAGTGCCCACCCGCCCGCCCTCTCGTTTCGTCTGTTGGCTTA
648 GCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * *
10250469 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA-GGTTCACGGCAGCAGGATCGA
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTGCA--GCAGCAGGATCGA
* * * * *
10250533 CAACATGCAGAGGGGGACTCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGACTGAGC
776 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGC
* * * *
10250598 GTCCGCACACTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCCAGTCTAA
841 GTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** *
10250655 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGACAGTAACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* * * *
10250720 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCGTCGGTGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGA
* *
10250785 ACCTGACCGAC-GCATTTGGGGTTTCCGACGATC-GGGGGCCTGGGGGGTTTATGTGCGCACATG
130 ACCTGACCGGCGGCA-TTGGGG-TTCCGACGATCGGGGGGCC-GGGGGG---GTGTGCGCACATG
* *
10250848 ATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
189 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
10250913 CTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
10250978 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-CTTTTGAGTTTTTATCTGAATT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTTGAGTTTTTAGCTGAATT
* *
10251042 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCT
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * ** *
10251107 GAAAAACTTTTAAGAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGT
448 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
* * * *
10251172 CATCTTGCCATGAAACCTCACACGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCGTAAAA
513 CGTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
10251237 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
10251302 CTTGCGCATCCCGCCTCTCTGGCCGGAGCAGTGCCCGCCCGCCCGCCCTCTCGTTTCGTCGGTTA
643 CTTGCGCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
10251367 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTCACGGTAGCAGG
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTGCA--GCAGCAGG
* * **
10251431 ATCGACAGCATGCAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGAC
771 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGAC
* * *
10251496 TGAGCGTCCGCACGCTTC-TTTCGTGGGTTGACTTACGCATACAGAGTTCATTTCCAGTCTAA
836 TGAGCGTCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
10251558 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGACGGTAACGGCAACACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* * *
10251623 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGA
** * *
10251688 ACCTGACCGGTAGCATTGGGGTTCCGGCGATCGGGGGTGCCGGGTGGGGTGTGCGCACATAATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGG-GGGGTGTGCGCACATGATGT
* * * *
10251753 GCGATGGATGCTAGTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * * *
10251818 CA-TGCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTCAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
10251882 TGGGGACACTTTTTTCAGATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * * * *
10251947 ATGCATGCCAACGAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAATCTCTTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
10252012 ACTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAACGAGTCGTC
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACAAGTCGTC
* *
10252077 TTGCCATGAAACTTCACACGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
10252142 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCCAGCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
10252207 CGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
647 CGCATCCCGCCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
10252271 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCAGCAGTAGGATC-
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG-TGCAGCAGCAGGATCG
* * * ** * *
10252335 AGCAGGACGCAAAGCGGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCAACTGA
775 A-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGA
* * * * * *
10252400 GAGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAA
839 GCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * ** * *
10252459 GCGTACGGAGTTCATTCCTAGTCTAAGATCAGATCAAACCGAGGGATGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* * *
10252524 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGT
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGA
* * ** *
10252589 ACCTGACCGACGGTATTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGGTGGGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGT
*
10252654 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
10252719 CACCTCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* **
10252784 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTTTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
10252849 GTGCATGCCAA
388 GTGCATGCCAA
10252860 NNNNNNNNNN
Statistics
Matches: 3573, Mismatches: 381, Indels: 88
0.88 0.09 0.02
Matches are distributed among these distances:
892 58 0.02
893 25 0.01
894 101 0.03
895 184 0.05
896 135 0.04
897 327 0.09
898 141 0.04
899 653 0.18
900 236 0.07
901 655 0.18
902 557 0.16
903 490 0.14
904 11 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
CATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTGCAGCAGCAGGATCGACAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGTCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10250665 original size:26 final size:26
Alignment explanation
Indices: 10250629--10250681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10250619 GTTGACTTAG
*
10250629 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10250655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10250681 G
1 G
10250682 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10251168 original size:902 final size:897
Alignment explanation
Indices: 10247963--10252859 Score: 6759
Period size: 899 Copynumber: 5.4 Consensus size: 897
10247953 GTTGACTTAG
* * * * * ** ** * * *
10247963 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCATATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGGTAACGGCAACACATGCTGGG
** * * * * * *
10248028 CTCAGGCATGTGCTGGTGTCATATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
*
10248093 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGAC-GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
10248157 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGACCTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
10248222 ACCCCCTTAAAGAGCATTTGAGATTTAACAGGGTTGCTGCCAGTAGCCATGAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10248287 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACGTTGAGTTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTTTTAGCTGAATTTTTTT
* ** * * *
10248352 GTTCATGCCAACAAAAATACAAGGATCACGTCTAAAAATTTTGGGGCCAAAACGCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* ** *
10248417 AATTTTAAAAAATCCTGAACCGTAAAAAAGTTTCAAAAATGGTGAAAAATAGAAAAACGAGTCGT
453 AATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAG-AAAACAAGTCGT
*
10248482 CTTGCCATGAAACTTCACACGAAGGCTTAAAGGACCATTGTATGAATTT---A--C-----AATG
516 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
10248537 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
10248602 ACGTATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCACTCGTTTCATCGGTT
646 GCGCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCC-T---CTCGTTTCGTCGGTT
* * *
10248667 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGTTTGCA-GTAACAG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG-TT-CACGCAGCAG
* * * ** *
10248731 GATCGCCAGCACGCAGAAGGGGACACGACCGATCCCCGGCTAATGCATCCCGCCCCTCTGGCCGG
770 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGA
*
10248796 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CTGAGCGTCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
10248859 GCATACGGAGTTCATTTCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGGTAACGGCAACACATGCTGGG
* * * * * * *
10248924 CTC-GAGCATGTGTTGGTGCCGCATTTTTCTTCATCGGCGCACCATCGTCGGAGCATCGCCGAAG
66 CTCAG-GCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAG
* *
10248988 AACCTGACCGACGACATTGGGGTTCCGACGAT-AGGGGGCCGGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACG-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
10249052 CGATGGGTGCTGGTGCTCGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10249117 ACCCCCTTAAACAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
10249182 GGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTTGACTTTTTATCTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * **
10249247 TGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCTGAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
** *
10249312 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
* *
10249377 GCCATGAAACTTCACACGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGAA
519 GCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
10249442 TTGGCATGCAAAAATATGAAGATTTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCA
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
10249507 CATCCCGCCTCTCTGGCCGGCGTAGTG-CCTCCTGCCCGCCCGCTCGTTTCGTCGATAGGCTTAG
649 CATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCTCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
10249571 GCATACGGAGTTAATTCCCACTCTAAGATCAGACTGGATTGAGGGCTGCA-GCAGCAGGATCAAC
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA-GG-TTCACGCAGCAGGATCGAC
* ** ** *
10249635 AGTACGCAGAGGGGGACCCGACCGATCCTTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
777 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * * *
10249700 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
842 TCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10249756 GCATACGGAGTTCATTCACAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGGTAACGGCAACACATGCTGGG
* * * ** *
10249821 CTCGGGCATGTGGTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCGAGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
** *
10249886 ACCTGACCGGTGGCATTGGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACC-GACGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
10249951 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
10250016 ACCCCCTGAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10250081 GGGGACACTTTTTTCAAATGGTTACCAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTTT
* * *
10250146 -TTCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
10250210 AATTTGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTTGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
10250275 TGCCATGAAACTTCACACGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10250339 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
10250404 GCATCCCGCCTCTCTGGCCGGAGTAGTGCCCACCCGCCCGCCCTCTCGTTTCGTCTGTTGGCTTA
648 GCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCTCTCGTTTCGTCGGTTGGCTTA
** *
10250469 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGTTCACGGCAGCAGGATCGAC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGTTCAC-GCAGCAGGATCGAC
* * * * *
10250534 AACATGCAGAGGGGGACTCGATCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGACTGAGCG
777 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
10250599 TCCGCACACTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCCAGTCTAA
842 TCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10250655 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGACAGTAACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGGTAACGGCAACACATGCTGGG
* * *
10250720 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGCCAGAGCATCGTCGGTGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
*
10250785 ACCTGACCGACGCATTTGGGGTTTCCGACGATC-GGGGGCCTGGGGGGTTTATGTGCGCACATGA
131 ACCTGACCGACGCA-TTGGGG-TTCCGACGATCGGGGGGCC-GGGGGG---GTGTGCGCACATGA
* *
10250849 TGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
10250914 TCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
10250979 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-CTTTTGAGTTTTTATCTGAATTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTTGAGTTTTTAGCTGAATTT
* *
10251043 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCTG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * ** *
10251108 AAAAACTTTTAAGAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTC
* * * *
10251173 ATCTTGCCATGAAACCTCACACGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCGTAAAAA
514 GTCTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
10251238 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
10251303 TTGCGCATCCCGCCTCTCTGGCCGGAGCAGTGCCCGCCCGCCCGCCCTCTCGTTTCGTCGGTTAG
644 TTGCGCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCTCTCGTTTCGTCGGTTGG
* * * *
10251368 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTCACGGTAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGTTCAC-GCAGCAGGAT
* * **
10251433 CGACAGCATGCAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTG
773 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTG
* * * *
10251498 AGCGTCCGCACGCTTCTTTCGTGGGTTGACTTACGCATACAGAGTTCATTTCCAGTCTAA
838 AGCGTCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
10251558 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGACGGTAACGGCAACACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGGTAACGGCAACACATGCTGGG
* *
10251623 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGA
66 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* *
10251688 ACCTGACCGGTA-GCATTGGGGTTCCGGCGATCGGGGGTGCCGGGTGGGGTGTGCGCACATAATG
131 ACCTGACC-G-ACGCATTGGGGTTCCGACGATCGGGGG-GCCGGG-GGGGTGTGCGCACATGATG
* * * *
10251752 TGCGATGGATGCTAGTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * *
10251817 ACA-TGCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTCAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
10251881 ATGGGGACACTTTTTTCAGATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * * * *
10251946 TATGCATGCCAACGAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAATCTCTTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
10252011 AACTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACAAGTCGT
* *
10252076 CTTGCCATGAAACTTCACACGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
10252141 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCCAGCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
10252206 GCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
646 GCGCATCCCGCCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCGCCCTCTCGTTTCGTCGGTTGGC
* * *
10252270 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCA-GCAGTAGGAT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA-GGTT-CACGCAGCAGGAT
* * * ** * *
10252334 C-AGCAGGACGCAAAGCGGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCAACT
773 CGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACT
* * * * * *
10252398 GAGAGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAA
837 GAGCGTCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * ** * *
10252459 GCGTACGGAGTTCATTCCTAGTCTAAGATCAGATCAAACCGA-GGGATGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGGTA-ACGGCAACACATGCTGG
* * * *
10252523 GCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAG
* * ** *
10252588 TACCTGACCGACGGTATTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGGTGGGCGCACATGATG
130 AACCTGACCGAC-GCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATG
*
10252653 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
10252718 ACACCTCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* **
10252783 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTTTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
10252848 TGTGCATGCCAA
387 TGTGCATGCCAA
10252860 NNNNNNNNNN
Statistics
Matches: 3574, Mismatches: 379, Indels: 90
0.88 0.09 0.02
Matches are distributed among these distances:
892 58 0.02
893 25 0.01
894 102 0.03
895 185 0.05
896 132 0.04
897 321 0.09
898 147 0.04
899 655 0.18
900 237 0.07
901 652 0.18
902 559 0.16
903 490 0.14
904 10 0.00
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGGTAACGGCAACACATGCTGGG
CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGACGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
CATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGTTCACGCAGCAGGATCGACAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGTCCG
CACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10251568 original size:26 final size:26
Alignment explanation
Indices: 10251532--10251584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10251522 GTTGACTTAC
*
10251532 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10251558 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10251584 G
1 G
10251585 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10252472 original size:26 final size:26
Alignment explanation
Indices: 10252436--10252485 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10252426 GACTTAGGCA
10252436 TACGGAGTTCAGTCCCAGTCTAAGCG
1 TACGGAGTTCAGTCCCAGTCTAAGCG
* *
10252462 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCAGTCCCAGTCTAAG
10252486 ATCAGATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCAGTCCCAGTCTAAGCG
Found at i:10255925 original size:26 final size:26
Alignment explanation
Indices: 10255888--10255940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10255878 TCTGATCGAT
10255888 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
*
10255914 CTTAGA-CTGGGAATGAACTCTGTATG
1 CTTAGATC-GGGAATGAACTCCGTATG
10255940 C
1 C
10255941 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Found at i:10256089 original size:426 final size:412
Alignment explanation
Indices: 10255297--10256105 Score: 928
Period size: 426 Copynumber: 1.9 Consensus size: 412
10255287 GCCAAGTACC
* * *
10255297 AGCACCCTTGGCACATCATGTGCGCACATGCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
1 AGCACCCATCGCACATCATGTGCGCACA-GCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATG
* ** * *
10255362 CCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGGTGAAGAAAATGCGGCACCCA
65 CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAATGCGGCACCCA
** * *
10255427 GCACATCCTAAGCCAGCAGTGCTGTCGCAACCTTGTCTGGTCCAATCTTAGACTGGGAATGAACT
130 GCACATCCTAAGCCAGCAGTGCTACCGCAACCTCGTCTGATCCAATCTTAGACTGGGAATGAACT
* * * *
10255492 CCGTATGCTTAGACTGGGTATGAACTTTGTATGCCTAAGTCGACCCACGAGAGCGCTCAGCTGGC
195 CCGTATGCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAGAGCGCTCAGCTGGC
*
10255557 CAAAAGGGCAGGATGTACAAGCCGGGGATCGACCGTGTCCCTCTCTGCATGCTATCGATCCTGCT
260 CAAAAGGGCAGGATGTACAAGCCGGGGATCGACCGGGTCCCTCTCTGCATGCTATCGATCCTGCT
* * * *
10255622 ACCGCAACCTTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCAGTATACCTAAGCGAACTGA
325 ACCGCAACCCTCAGTCTGATCCGATCATAGACTGGGAATGAACCCAGTATACCTAAGCGAACTGA
10255687 TGAAAAGAGCGAGCGGGCGGGCG
390 TGAAAAGAGCGAGCGGGCGGGCG
* * * *
10255710 AGCACCCATCGCACATCTTGTGCGCACA-CCCCCCCGGCCCCCTCGATCGTTGAAACCTCAATGC
1 AGCACCCATCGCACATCATGTGCGCACAGCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGC
* * ** * * *
10255774 CGCCGGTTAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGGCGGAGAAAAATG-TG-ACGGC
66 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAG-AAAATGCGGCAC-CC
* * *
10255837 AGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGAT-CGATCTTAGA-TCGGGA
129 AGCACATCCT-AAG-CCAGCA-GTGCTACCGCAA-CCTCG-TCTGATCCAATCTTAGACT-GGGA
10255900 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCG
188 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA-CC------C-A-CG
* * * * * * ** **
10255965 TACGGGTGCTCATCTGGCCAGAGGGGCGGGATG-AGCAAGTTGGGGATCGGTCGGGTCCCTCTCT
244 -A-GAGCGCTCAGCTGGCCAAAAGGGCAGGATGTA-CAAGCCGGGGATCGACCGGGTCCCTCTCT
* * * * *
10256029 GCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCATAGACTGGGAATGAACCCC
306 GCATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGATCCGATCATAGACTGGGAATGAACCCA
*
10256094 GTATGCCTAAGC
371 GTATACCTAAGC
10256106 CAACCGACGA
Statistics
Matches: 325, Mismatches: 51, Indels: 27
0.81 0.13 0.07
Matches are distributed among these distances:
410 2 0.01
411 82 0.25
412 8 0.02
413 31 0.10
414 11 0.03
415 63 0.19
416 7 0.02
422 1 0.00
423 1 0.00
424 2 0.01
425 2 0.01
426 115 0.35
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (412 bp):
AGCACCCATCGCACATCATGTGCGCACAGCCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGC
CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAATGCGGCACCCAG
CACATCCTAAGCCAGCAGTGCTACCGCAACCTCGTCTGATCCAATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAGAGCGCTCAGCTGGCC
AAAAGGGCAGGATGTACAAGCCGGGGATCGACCGGGTCCCTCTCTGCATGCTATCGATCCTGCTA
CCGCAACCCTCAGTCTGATCCGATCATAGACTGGGAATGAACCCAGTATACCTAAGCGAACTGAT
GAAAAGAGCGAGCGGGCGGGCG
Found at i:10262238 original size:26 final size:26
Alignment explanation
Indices: 10262202--10262254 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10262192 CTGGTCGGAT
*
10262202 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10262228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10262254 C
1 C
10262255 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10262283 original size:898 final size:890
Alignment explanation
Indices: 10260326--10263108 Score: 3821
Period size: 898 Copynumber: 3.1 Consensus size: 890
10260316 GGAACCGCAA
* *
10260326 TGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCTAGCATGTGCTGCCACAACCCT
1 TGCCCC-GCGAAGAAAAATGCG-CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCT
* * * * *
10260391 CGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGTAATGAACTCTGTAT
64 CGATCCGG-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * ** * *
10260456 GCCTAAGTTAACCCATGAAACGAGCGTGCGGGCATTCAGCCGGCTCAG-GGGCGGGATGCGTAAA
128 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACGGC-CAGAGGG-GGGATGCG-CAA
* * * * * * *
10260520 CCGAGGATTGGTTGGGTCACCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTTGGTCCGATC
189 GCGAGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGGTC
* **
10260585 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGGCGGG
254 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * ** *
10260650 CAGGCACTACGTCGTCCAGAGAAATGGGATGTGCAAGTAGTGGATCGATAGGGTGGTAGGTGGGT
319 CAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
*** *
10260715 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGG
384 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
10260780 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCTTTTTCTATTTTTCACGATTTTTG
449 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
** * * * *
10260845 AAACTTTTTACGGTTCGAAACTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTA
514 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
10260910 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
579 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* *
10260975 GATTTTGTGACCATTTGAAAAAAGTGC-CCCCATTTCAAACACTTTAATGGCTACTGGCAGTAAA
644 GATTTTGTGACCATTTGAAAAAAGT-CTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
10261039 CCTGTAAAATCTCAAATA-CTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
708 CCTGTAAAATCTCAAA-AGCTCTTAAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
10261103 GTCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA-TGTGCACACATCCCCCGACCCCCC
771 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAGTGTGCACAC-CCCCCCGGCCCCCC
* * * *
10261167 GATCGCCGAAACTCCAATGCTGCGGGTCAGGTTCTCCGACGATGCCCCGGCGATGG
835 GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCCCCGGCGATGG
* *
10261223 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCT
1 TGCCCCG-CGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCT
* * * *
10261288 CGATCCGGTCCGATCTTGGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTTCGTAT
64 CGATCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
*
10261353 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACTGGCCAGAGGGGTGCGATGGGCAAG
128 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC-GGCCAGAGGGG-G-GATGCGCAAG
* *
10261418 CTGAGG-TTCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGT
190 C-GAGGATT-GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGGT
* *
10261482 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGG
253 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
10261547 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGG
318 GCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGG
* * *
10261612 TTTAGGCACATCTTCATATTTCTGCATGCCAAGGCCATTTTAATGGCTTGTAAATTCGTACAATG
383 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
10261677 GTCCCTTAAGCCTTCACGTGATGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
448 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
** * *
10261742 GAAACTTTTCGCTGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAATTTTGGCCCCAAACTTGGT
513 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGT
*
10261807 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
578 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
10261872 AGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
643 AGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
**
10261937 CCTGTAAAATCTCAAAAGCTCTTGAAAGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGG
708 CCTGTAAAATCTCAAAAGCTCTT-AAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
10262002 CCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGTGCACACCCCCCCGGCACCCCC
772 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA-GTGTGCACACCCCCCCGGC-CCCCC
* * * *
10262067 GATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCC-AGCGATGCTCCGGTGATGG
835 GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCCCCGGCGATGG
*
10262123 TGCCCCAGCGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCCACAACCCT
1 TGCCCC-GCGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCT
* * *
10262188 CGTTCTGGTCGGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
64 CGATCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
*
10262253 GCCTAAGTCAACCCACG-AACGAGC-TGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCACAAG
128 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACGGCCAGA-GGG-GGGATGCGCAAG
* * * * * * * *
10262316 CCAGGGAATGGACGGGTCCCCTTCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCAGTCTGGTC
190 CGA-GGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGGTC
*
10262381 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCCGGG
254 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
10262446 CTGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGTATCAATAGGGTGGTAGGTGGGT
319 CAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
* * *
10262511 TTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTCTAAAATCATACAATGG
384 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
10262576 TCCCTTAAGCCTTCGCATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTG
449 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
* * *
10262641 AAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCAGAAGGAGTTTTAG-CCAAAACTTGGT
514 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGT
*
10262704 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAGAGTGTACA
578 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *
10262769 AGATTTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
643 AGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
10262834 TCTGTAAAATCTCAAATGCTCTTTAAA-GTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGG
708 CCTGTAAAATCTCAAAAGCTC-TTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * *
10262898 CCAATATAAGTGCCAAGTACCAGCACCCATCGCACACCACGTGCGTACACCCCTCCGGCCCCCCG
772 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCA-GTGTGCACACCCCCCCGGCCCCCCG
* * * ** * ** * **
10262963 ATCATCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGTGTTGCTTCGACGACAG
836 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCCCCGGCGATGG
* * * * *
10263018 TGCCCTGACGAAGAAAAATATG-GCACC-GACACATGTCCGAGCCCAGCATGTGCTACCGCAACC
1 TGCCCCG-CGAAG-AAAA-ATGCGCACCAG-CACATGCCCGAGCCTAGCATGTGCTGCCACAACC
* * *
10263081 CTTGGT-CGGTCCGATCTTAGAATGGGAA
62 CTCGATCCGGT-CGATCTTAGACTGGGAA
10263109 CTACGTCGGC
Statistics
Matches: 1678, Mismatches: 177, Indels: 65
0.87 0.09 0.03
Matches are distributed among these distances:
894 20 0.01
895 96 0.06
896 95 0.06
897 329 0.20
898 918 0.55
899 26 0.02
900 193 0.12
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
TGCCCCGCGAAGAAAAATGCGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCG
ATCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACGGCCAGAGGGGGGATGCGCAAGCGAGGA
TTGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCAC
TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAAAGCTCTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGTACATCAGTGTGCACACCCCCCCGGCCCCCCGATCGTCGAAA
CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCCCCGGCGATGG
Found at i:10266953 original size:26 final size:26
Alignment explanation
Indices: 10266902--10266954 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10266892 CTGGTCCGAT
**
10266902 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10266928 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10266954 C
1 C
10266955 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10267817 original size:26 final size:26
Alignment explanation
Indices: 10267788--10267840 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10267778 CCGGTCTGAT
*
10267788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10267814 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10267840 C
1 C
10267841 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10268446 original size:900 final size:898
Alignment explanation
Indices: 10266183--10271421 Score: 7000
Period size: 900 Copynumber: 5.8 Consensus size: 898
10266173 CTCGGTCTGA
* *
10266183 TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA-ACAAGCGGGCGGG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGACAAGCGGGCAGG
* * *
10266246 CGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGCGTGGTAGGT
66 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
10266311 GGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAGTTAATAC
131 GGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
10266376 AATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
10266441 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAGTTTTTTCGGAAGGGGTTTTGGCCCCTAACT
260 TTTTAAAACTTTTTACGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
10266506 TGGTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAGAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
10266571 TACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
10266636 CAAACCTATAAAATCTCAAATACTCTTTAAAGGGGTGCT-AGTTCTCGAGGTTTGATGAGGGATA
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG-TGAGTTCTCGAGGTTTGATGAGGGATA
* * *
10266700 AGGGGCTAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGG-CC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * **
10266764 CCCGATCGCCGGAACCCTAATGCCGCCGGTAAGGTTCTCCGACGGTGCTCCGACGATGGCACCCC
583 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCCCC
* * * * *
10266829 GATGAAGAAAAATACGGCTCCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCT
647 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
10266894 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCATATGCCTAA
712 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
10266959 GTCAACCCACGAAACGAGCATGCGGGTGCTCAG-ACGGCCAGAGGGGCGGGATGCGCAAGTCGAG
777 GTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCA-GGCCAGAGGGGCAGGATGCGCAAGCCGGG
** * * *** * * *
10267023 GATCGGTCGGGTCCCCCTCTACGTGCTACTGATCCTGCTACTGCAACTCTCGGTTCAG
841 GATCGACCGGGTCCCCCTCTACGTACTACCGATCCTGCTACCATAACCCTCAGTTCGG
* * * * *
10267081 TCCGATCCTAGATTGGGAATGAGCTCCGTATGCCTAAGTCAACC----AATGA-AA-C--G-A-G
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGACAAGCGGGCAGG
* * *
10267136 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAGGCTGTGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * *
10267201 GGGTTTAGGTACATCTTTATATTTTTACGTGTCAATGCCATTTTTATGGCTTGTAAA-T--T-CA
131 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
10267262 ATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACT-AT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGAT
* * * * ***
10267326 TTTCAAAACTTATTACGGTTCGAGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCTAAAAACT
260 TTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
10267391 TGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
10267456 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
10267521 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
10267586 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCC
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * * * *
10267651 CCAATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCAGTGATGCTCCTG-CGATGATGCCCA
584 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCC-GACGATGGTGCCCC
* * * * *
10267715 GACGAAGAAAAATGCTGCCCCAGCACATACCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC
647 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
10267780 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
712 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
10267845 GTCAA-CCATGAAATGAGCGTGCGGACGTTCAGCAGGCCAGAGGGGCAGGACGCGCAAGCCGGGG
777 GTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
** * * * *
10267909 ATCGAAAGGGTCCCCCTCTGCCTGCTACCGATCCTGCTACCATAACCCTCAGTGCGG
842 ATCGACCGGGTCCCCCTCTACGTACTACCGATCCTGCTACCATAACCCTCAGTTCGG
* ** * *
10267966 TCTGATCTTAGACTATGATTGAACTCCGTATGCCTAAGCCAACTGATGAAATGAGCAAGCGGGCA
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-GA-CAAGCGGGCA
* *
10268031 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTTGTAG
64 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
10268096 GTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATA
129 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * **
10268161 CAATGGTCCCTTAAGCTTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
10268226 TTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAAA
259 TTTTTAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
10268291 TTGGTAGACGTGATCCATGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAT
323 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
10268355 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
10268420 GCAAACCTGTAAAATCTCAAATGCTCTTCAACGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
10268485 GGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATTTGTGCACACCCCTCCGGCC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCC
* *
10268550 CCCTCGATCGTCGGAACCCCAGTGCCGTCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCC
582 CCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCC
** * * * *
10268615 CGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCCTTGGTC
646 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * *
10268680 TGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACGGGGAATAAACTCCGTATGCCTA
711 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
10268745 AGTCAACCCACGAAATGAGCGTTCGGACGCTCAGCAGGCCATACGGACAGGATGCGCAAGCCGGA
776 AGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* * ** * *
10268810 GATCGGCCGGGTCCCCCTCTAC--A-T---G---CTG---CCACAACCCTTGGTCCAG
841 GATCGACCGGGTCCCCCTCTACGTACTACCGATCCTGCTACCATAACCCTCAGTTCGG
* * * *
10268856 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-ACGAGCGGACGGG
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGACAAGCGGGCAGG
* *
10268919 CGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCACCAAGCCGTGGATCGATAGGGTGGTAGG
66 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGG
* * **
10268984 TGGGTTTAGGAACATCTTCATATTTCTACATGCCAATGCCATTTTTATTTCTTGTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
10269049 AAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
10269114 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACT
260 TTTTAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
10269179 TGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTC
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
10269244 TACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGTCTACTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
10269309 CAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
10269374 GGGGCCAATATAAGGGCTAAATACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCC
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCC
* * * * **
10269439 CCCGATCGTC-GAACCCCAATGTCGCCGGTCAGGTTCTTCGGTGATACT-TTAGCGATGGTGCCC
583 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TCCGCGATGCTCCGA-CGATGGTGCCC
* *** * *
10269502 CAACGAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCAGCCGTAACCCTCGGTC
646 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
10269567 CGGTTCGATCCTAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
711 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * **
10269632 AGTCAACCCACT-AAATGAGCGGGCGGGCACTCAGCCGGCCAGAGGGGCAGGAGGTACAAGCCGG
776 AGTCAACCCA-TGAAATGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * * * * ** * * *
10269696 GGATCGACCTGGTCCCCCTTTGCGTACTGCCGGTCCTGCTGTCGTAGCCTTCAG-TCTGG
840 GGATCGACCGGGTCCCCCTCTACGTACTACCGATCCTGCTACCATAACCCTCAGTTC-GG
*
10269755 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAAGCGGGC-
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-GA-CAAGCGGGCA
* * * * * *
10269819 GAGCGGGCGGACACTATG-CAGGCCAAAGAGACGTGATGCGCAAGCCATGGATCGATAGAGTGGT
64 G-GCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
10269883 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
127 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
10269948 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * *
10270013 GATTTTCT-AAACTTTTTACGGTACGGGATTTTTGAAAAATTTTTT-GGAAGGACTTTTGGCCCC
257 GATTTT-TAAAACTTTTTACGGTTC-GGATTTTT-TAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
10270076 AAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCG
319 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
10270141 AAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
384 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
10270205 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGA
449 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
10270270 AAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
514 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
** * * *
10270335 GGCCCACCCGATCACCAGAACCCTAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
578 GGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGACGATGG
** * * *
10270400 TGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCT-CCGGTAAGCC
641 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCC
** * * **
10270464 TCGGTCTAGTCCGATCTTAGATTGGGAATGAACTCCGTTTGCTTATTCTGGGAATGAACTCCGTA
705 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
10270529 TGCCTAAATCAACCCATGAAAAGAGTGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCACAA
770 TGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAA
* * * * * *
10270594 GCCGGGCATC-AGCCTGGTCCCCCTCTACGTACTATCGATCCTGCTATCTTAACCTTCAGTTCGG
835 GCCGGGGATCGA-CCGGGTCCCCCTCTACGTACTACCGATCCTGCTACCATAACCCTCAGTTCGG
* * * *** *
10270658 TCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAG-CTA--GAGGAAACGAGTGGGCGAGCA
1 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-GA-CAAGCGGGCA
* * * * * * * * *
10270720 GACGGGTGGGCACTACGCCGACCAGAGAGATGGGATACGCAAGCCATGTATCAATAGGGTGGTAG
64 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
10270785 GTGGGTTTAGGCACATCTTCATATTTCTTCTTTCCAATGCCATTTTTATGGCTTGTAAATTCATA
129 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
10270850 CAATGGTCCCTTAAGCTTTCACATGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
10270915 TTTTTGAAAA-TTTTTACGGTTCAGGATTTTTTTAAATTTTTTCGAAAGGAATTTTGGCCCCAAA
259 TTTTT-AAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
10270979 CTTGGTAGACGTGATCCTTGTATTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
322 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
10271044 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAATGAC
387 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * ** *
10271109 AGAAAACCTGTAAAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTTAAGGATTGATGAGGGAT
452 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
10271174 AGGGGGCCAATATAAGGGCCAAGTACCACCACCCACCGCACATCATGTGCGCACACCCTCCGGTC
517 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-C
* * * *
10271239 TCCCCGATCGCCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
581 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGACGATGGTGCC
* * * * *
10271304 CTGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAACCCTTGGT
645 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
10271369 CCGATCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAA
710 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
10271422 GCACACCCCC
Statistics
Matches: 3823, Mismatches: 441, Indels: 152
0.87 0.10 0.03
Matches are distributed among these distances:
884 4 0.00
885 476 0.12
886 244 0.06
887 441 0.12
888 217 0.06
889 36 0.01
890 137 0.04
892 3 0.00
893 5 0.00
894 1 0.00
895 4 0.00
896 6 0.00
897 111 0.03
898 41 0.01
899 64 0.02
900 700 0.18
901 592 0.15
902 407 0.11
903 331 0.09
904 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGACAAGCGGGCAGG
CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGACGATGGTGCCCCGACG
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCATGAAATGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
ACCGGGTCCCCCTCTACGTACTACCGATCCTGCTACCATAACCCTCAGTTCGG
Found at i:10268720 original size:26 final size:26
Alignment explanation
Indices: 10268691--10268741 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10268681 GATCCGATCA
* *
10268691 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACGGGGAATAAACTCCGTATGCT
10268717 TAGACGGGGAATAAACTCCGTATGC
1 TAGACGGGGAATAAACTCCGTATGC
10268742 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACGGGGAATAAACTCCGTATGCT
Found at i:10269607 original size:26 final size:26
Alignment explanation
Indices: 10269578--10269628 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10269568 GGTTCGATCC
*
10269578 TAGACTTGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
10269604 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
10269629 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:10271606 original size:26 final size:26
Alignment explanation
Indices: 10271566--10271618 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10271556 CCGGTCTGAT
* * *
10271566 CTTAGACTTGCAATGCACTCTATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
10271592 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
10271618 C
1 C
10271619 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:10273356 original size:26 final size:26
Alignment explanation
Indices: 10273317--10273366 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10273307 CTGGTCCAAT
*
10273317 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10273343 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
10273367 AGCCTAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10273737 original size:25 final size:25
Alignment explanation
Indices: 10273709--10273756 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
10273699 TTTTCTATTT
* *
10273709 TTCATGACTTTTGAAACTTTTTTGG
1 TTCAGGACTTTTGAAAATTTTTTGG
* *
10273734 TTCAGGATTTTTTAAAATTTTTT
1 TTCAGGACTTTTGAAAATTTTTT
10273757 CGGAAGGAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.23, C:0.08, G:0.12, T:0.56
Consensus pattern (25 bp):
TTCAGGACTTTTGAAAATTTTTTGG
Found at i:10274206 original size:26 final size:26
Alignment explanation
Indices: 10274177--10274229 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10274167 CCAGTTCGAT
*
10274177 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10274203 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10274229 C
1 C
10274230 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10275098 original size:26 final size:26
Alignment explanation
Indices: 10275062--10275112 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10275052 GATCCAATCT
10275062 TAGACTGGGAATGAACTCCCTATGCA
1 TAGACTGGGAATGAACTCCCTATGCA
*
10275088 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCCTATGC
10275113 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCCTATGCA
Found at i:10275571 original size:893 final size:885
Alignment explanation
Indices: 10271496--10276907 Score: 5965
Period size: 893 Copynumber: 6.2 Consensus size: 885
10271486 GCTGACCTGG
* * * * * * * *
10271496 CGAAGAAAAATACAGCACCAGCACATGCTCGAGCCTAGCATGTACTGCCATAACTCTC-GTCCGG
1 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGA
* * * * ** *
10271560 TCTGATCTTAGACTTGCAATGCACTCTATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
10271625 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
131 CAACCCATGAAACGAGCGTACAGGCGCTCAG-CAGCCAGA-AGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
10271690 CGGTCGGGTCCTCCTCTGCGTGCTGTCGATCCTACTACCGCAACCCTCAGTTCGGTGT-AGTCTT
194 CGGTCGGGTCC-CCTCTAC-TGCTGTCGATCCTGCTGCCACAACCTTCGGTTCGATCTGA-TCTT
* * * *
10271754 AGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGG-GCGGGCGGGCA
256 AGACTGGGAATGAACTACGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGCGCGGGCGGGCA
* *
10271818 CTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
321 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** * *
10271883 ACATCTTAATATTTCTGCATGCGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
386 ACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
10271948 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACT
451 AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACT
* * * * *
10272012 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCGAAACTTGGTAGACGT
515 TTTTGCGGTTTGGGATTTTTTAAAATTTTTTC-GAAGGATTTTTAGCCCCAAACTTGGTAGACGT
* *
10272077 GATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAATTCGAAGTGTACAAGATTT
579 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
10272142 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
644 TGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* **
10272207 AAATCTCAAACGCTCTTTAAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
709 AAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * ** * *
10272272 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGATCA-TCGGA--A
773 ATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGCGCGCAAACCCCCCCGGCCACCCCGATCA
** ** * * * * *
10272333 -CGGTAATGCCGCTGGTCA-GGTTCTACGAGGATGCTCCGGTGATGGTGCCCCGA
838 CCGG-AACCCCAAT-GCCACAG--AT-C-AGG-TTCTCCGGCGATGGTGCCCCGA
* **
10272386 CGAAGAAAAAATG--GCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAA-CC-C--TC-G
1 CGAAG-AAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTG
*
10272444 ----G-TC-T--A----G--T---CT--G-AT-TTTAGACTGGGAATGAACTCCGTATGCCTAAG
65 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
10272488 TTAACCCACGAAACGAGCGTACAGGCACTCAGCCAGCTAGAAGGGCGGGATGCACAAGCCAGGGA
130 TCAACCCATGAAACGAGCGTACAGGCGCTCAG-CAGCCAGAA-GGCGGGATGCGCAAGCCGGGGA
* * * * * *
10272553 TCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACCATAACCCTCGG-TCTGATCCGATCT
193 TCGGTCGGGT-CCCCTCTAC-TGCTGTCGATCCTGCTGCCACAACCTTCGGTTC-GATCTGATCT
* * * * ** * * * *
10272617 TAGACTGGGATTGAACTCCATACGTATAAGCCAACCGACGAAATGA----GC-GAGCGGACGGGC
255 TAGACTGGGAATGAACTACGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGCGCGGGCGGGC
* * * *
10272677 ACTACGTCAGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
320 ACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
10272742 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAACTTCATACAATGGTCCCT
385 CACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * **
10272807 TAAGCCTTCACGTGAAGTGTCGTGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTG-AAAC
450 TAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAAC
* * *
10272871 TTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG-TGTTTTGGCCCCAAACTTGGTAGA
514 TTTTTGCGGTTTGGGA-TTTTTTAAAATTTTTTC-GAAGGAT-TTTTAGCCCCAAACTTGGTAGA
* *
10272935 CGTGATCCTTGTATTTTT-TTCAGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
576 CGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
10272999 ATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGTAAACC
640 ATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * *
10273064 TGTAAAATCTCAAATGCTATTTAAGGGGGTGCGAGTTCTCGATGTTTGATGAGGCATAGGGGGCC
705 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
10273129 AATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACA-CCCCCC-G--A--TCG-
770 AATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGCGCGCAAACCCCCCCGGCCACCCCGA
* * * * *
10273187 TCA---GAACACCAATGCCGCCAG-TCAGGTTCTCCAGCGATGCTCCGACGACGGTGTCCCGG
835 TCACCGGAACCCCAATGCC-ACAGATCAGGTTCT-C--C---G----G-CGATGGTGCCCCGA
* * *
10273246 CGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCTG
1 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAG-TCTG
* * * * *
10273310 GTCCAATCTTAGACTGTGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTAAGCCTAAG
65 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
10273375 TGAACCC-----ACGA----A-A-----T--G-AG-C---ATGC---AT---C---CCGGGGATC
130 TCAACCCATGAAACGAGCGTACAGGCGCTCAGCAGCCAGAAGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * *
10273409 GGTAGGGTCCCCCTCTAGATGCTATCGATCCTG-T--CGCAACCCTCAGTCCGGTCTGATCTTAG
195 GGTCGGGT-CCCCTCTA-CTGCTGTCGATCCTGCTGCCACAACCTTCGGTTCGATCTGATCTTAG
* *
10273471 ACTGGGAATGAACT-CTGTATGCCTAAGCCAA-TCGATGAAACGAGCGGGTGG-GCGGGCGGGCA
258 ACTGGGAATGAACTAC-GTATGCCTAAGCCAACT-GACGAAACGAGCGGGCGGCGCGGGCGGGCA
* * *
10273533 CCATGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
321 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
10273598 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTT
386 ACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
10273663 AAGCCATCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGACTTTTG-AAACT
451 AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACT
* ** * * *
10273727 TTTT-TGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCCTAAACCTGGTAGACGT
515 TTTTGCGGTTTGGGATTTTTTAAAATTTTTTC-GAAGGATTTTTAGCCCCAAACTTGGTAGACGT
* * *
10273790 GATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAGAAACTCTAAGTGTACAAGATTT
579 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
10273855 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
644 TGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
10273920 AAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
709 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * * * *
10273985 TAAGGGCAAAGTACCAGCACACATCGCACATCATGTGCACACA-CCCCCCGGCC-CCCCTATCGC
774 TAAGGGCCAAGTACCAGCACCCATCGCAAATCATGCGCGCAAACCCCCCCGGCCACCCCGATCAC
** * * *
10274048 CTAAACCCCAATGCCACCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
839 CGGAACCCCAATGCCA-----C-AG--AT-C-A-GGTTCTCCGGCGATGGTGCCCCGA
* * * *
10274106 CGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCAGTC-CA
1 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGA
* *
10274170 GTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
66 -TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** ** * * *
10274235 TCAACCCACGAAATAATTGTACGGGCGCTCAGCCGACCA-AAGGGGCGGATGCGCAAGCCGGGGA
130 TCAACCCATGAAACGAGCGTACAGGCGCTCAGCAG-CCAGAAGGCG-GGATGCGCAAGCCGGGGA
* * * * *
10274299 TCGGCCGGGTTCCCCTCTACTTGCTGCCGATCCTGCTTCCACAACCTTCGGTTTGGTCTGATCTT
193 TCGGTCGGG-TCCCCTCTAC-TGCTGTCGATCCTGCTGCCACAACCTTCGGTTCGATCTGATCTT
* * *
10274364 AGACTGGGATTGAACTGCGTATGCCTAAGCCAACTGACGAAACGA----GCGG-GCGGGCGAGCA
256 AGACTGGGAATGAACTACGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGCGCGGGCGGGCA
* * *
10274424 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGATGGTAGGTGGGTTTAGGC
321 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
10274489 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTC
386 ACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
10274554 AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACGT
451 AAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAAAC-T
* * *
10274619 TTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAGGAGTTTTAGCCCCAAATTTGGTAGACATG
515 TTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAGGATTTTTAGCCCCAAACTTGGTAGACGTG
10274684 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
580 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
10274749 GTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
645 GTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
10274814 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGATTGATGAGGGATAGGGGGCCAATAT
710 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * **
10274879 AAGGTCCAAGTACCAGCACCCATCGCAAATCATGCGCGCACACCCCCCCGGCC-CCTCCGATCGT
775 AAGGGCCAAGTACCAGCACCCATCGCAAATCATGCGCGCAAACCCCCCCGGCCACC-CCGATCAC
*
10274943 CGGAACCCCAATGCCATCAG-TCAGGTTCTCTGGCGATGGTGCCCCGA
839 CGGAACCCCAATGCCA-CAGATCAGGTTCTCCGGCGATGGTGCCCCGA
* * * * *
10274990 TGGAGAAAAATGCAGCACCAGCACATGCCCGAGCCAAGCAAGTGCTGTCGTAACCCTC-GTCTGA
1 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGA
* * * *
10275054 TCCAATCTTAGACTGGGAATGAACTCCCTATGCATAGACTGGGAATGAACTCCGTATGCCTAACT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
10275119 CAACCCATGAAACGAGCGTACAGGCGCTCAGCTAGCCAGAATGACGGGATGCGCAAGCCGGAGAT
131 CAACCCATGAAACGAGCGTACAGGCGCTCAGC-AGCCAGAA-GGCGGGATGCGCAAGCCGGGGAT
* * *
10275184 CGATCGGGTCCCCCTCTACGTGCTGTCGATGCTGCTGCCACAACATTCGGTTCGATC-GAATCTT
194 CGGTCGGGT-CCCCTCTAC-TGCTGTCGATCCTGCTGCCACAACCTTCGGTTCGATCTG-ATCTT
* * * * *
10275248 AGATTGGGAATAAACTTCGTATGCCTACGCCAACCGACGAAACGAGCGGGCGAGCAGTCGGGCGG
256 AGACTGGGAATGAACTACGTATGCCTAAGCCAACTGACGAAACGAGCGGGCG-GC-G-CGGGCGG
* *
10275313 GCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
318 GCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
10275378 GGCACATCTTCACATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
383 GGCACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
10275443 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCACGATTTTGAAAA
448 CTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAAA
*
10275508 CTTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTAGCCCCAAACTTGGTAGA
513 C-TTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCG-AAGGATTTTTAGCCCCAAACTTGGTAGA
*
10275573 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGA
576 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
10275638 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
641 TTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
10275703 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
706 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
10275768 GTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCGCCCGGCCACCCCGAT
771 ATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGCGCGCAAACCCCCCCGGCCACCCCGAT
* *
10275833 CACCGGAACCTCAATGCCACCGATCAGGTTCTCCGGCGATGGTGCCCCGA
836 CACCGGAACCCCAATGCCACAGATCAGGTTCTCCGGCGATGGTGCCCCGA
* ** ** * * * *
10275883 CGAAGAAAAATGCGGCAATAAAACTTGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGG
1 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGA
*
10275948 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
66 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
10276013 CAACCTATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGAATGCGTAAGCCGGGGAT
131 CAACCCATGAAACGAGCGTACAGGCGCTCAG-CAGCCAGA-AGGCGGGATGCGCAAGCCGGGGAT
* * ** * * *
10276078 TGGTCGGGTCACC-CT-CTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCGATCTGATCTTAGA
194 CGGTCGGGTCCCCTCTACTGCTGTCGATCCTGCTGCCACAACCTTCGGTTCGATCTGATCTTAGA
* * * *
10276141 CTGGGAATGAACTACATATGCCTAAGCCAACTGACGAAATGAGCGGGAGGGCGGGCGAGCGGGCA
259 CTGGGAATGAACTACGTATGCCTAAGCCAACTGACGAAACGAGCGGG-CGGC--GCGGGCGGGCA
* * * *
10276206 CTATGCCGGCCAAAGAGACGGGATGCGTAATCCGTGGATCGAGAGGGTGGTAGGTGGGTTTAGGC
321 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
10276271 ACATCTTTATATTTC--TGTACAAATC-CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
386 ACATCTTCATATTTCTGTGTGCCAA-CGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
10276333 TAAGCCTTCACGTTAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAAC
450 TAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAAC
* * ** * * *
10276397 TTTTTGCGGTTCGAGAAATTTTAAAATTTTTTTGGAAGGATTTTTGGCCCTAAACTTGGTAGACG
514 TTTTTGCGGTTTGGGATTTTTTAAAA-TTTTTTCGAAGGATTTTTAGCCCCAAACTTGGTAGACG
* * *
10276462 T-ATCCTTGTATTTTTGTTGACATGCATAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATT
578 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* **
10276526 TTGTGACC-GTTCGAAAAAAGTGTCCCCATTAGAGACACTTTAATGGCTACTGGCAGCAAACCTG
643 TTGTGACCATTTC-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
10276590 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTAGAGGTTTGATGAGGGATAGGGGGCCAA
707 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
* * * ** * * * * * *
10276655 TAT-AGGGCCAAGTACAAGCACCC--C-C----CA-GCCCCCCTGA--TCGCCAG-AATCCCAAT
772 TATAAGGGCCAAGTACCAGCACCCATCGCAAATCATG-CGCGCAAACCCCCCCGGCCACCCCGAT
* * ** * * *
10276708 -GCC-G-TCGGTCAAGTTCTC-C-GA-C-GATGCTCCGGCGATGGTGCCCCGA
836 CACCGGAAC-CCCAA-TGC-CACAGATCAGGTTCTCCGGCGATGGTGCCCCGA
* * *
10276754 CGAAGAAAAATGC-GACACCAGCACATGCCCGAGCCCAGCATCTGCTGCCGCAACCCTCGGTCTG
1 CGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTG
* * * * * *
10276818 GTCTGATCTTAGACTGGGAATAAACTTCTTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAG
65 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
10276883 CCAATCCACGAAACGAGCGTGCAGG
130 TCAACCCATGAAACGAGCGTACAGG
10276908 GGGGCACTAC
Statistics
Matches: 3925, Mismatches: 434, Indels: 345
0.83 0.09 0.07
Matches are distributed among these distances:
849 3 0.00
850 5 0.00
851 53 0.01
852 244 0.06
853 32 0.01
854 48 0.01
855 198 0.05
856 3 0.00
857 5 0.00
859 9 0.00
860 458 0.12
861 220 0.06
862 2 0.00
863 5 0.00
864 171 0.04
865 12 0.00
866 1 0.00
868 6 0.00
869 2 0.00
870 4 0.00
871 163 0.04
872 4 0.00
873 7 0.00
874 6 0.00
875 8 0.00
876 3 0.00
877 4 0.00
878 8 0.00
879 1 0.00
880 4 0.00
881 1 0.00
882 7 0.00
883 96 0.02
884 183 0.05
885 26 0.01
886 187 0.05
887 87 0.02
888 108 0.03
889 42 0.01
890 172 0.04
891 199 0.05
892 276 0.07
893 629 0.16
894 140 0.04
895 81 0.02
896 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGA
TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCATGAAACGAGCGTACAGGCGCTCAGCAGCCAGAAGGCGGGATGCGCAAGCCGGGGATCG
GTCGGGTCCCCTCTACTGCTGTCGATCCTGCTGCCACAACCTTCGGTTCGATCTGATCTTAGACT
GGGAATGAACTACGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGCGCGGGCGGGCACTATG
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTGC
GGTTTGGGATTTTTTAAAATTTTTTCGAAGGATTTTTAGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCAAATCATGCGCGCAAACCCCCCCGGCCACCCCGATCACCGGAACC
CCAATGCCACAGATCAGGTTCTCCGGCGATGGTGCCCCGA
Found at i:10275983 original size:26 final size:26
Alignment explanation
Indices: 10275954--10276006 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10275944 CTGGTCCGAT
*
10275954 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10275980 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10276006 C
1 C
10276007 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10276876 original size:26 final size:26
Alignment explanation
Indices: 10276825--10276877 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10276815 CTGGTCTGAT
* *
10276825 CTTAGACTGGGAATAAACTTCTTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
10276851 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10276877 C
1 C
10276878 CTAAGCCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10277584 original size:26 final size:26
Alignment explanation
Indices: 10277548--10277600 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10277538 CCAGTCCGAT
*
10277548 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10277574 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10277600 C
1 C
10277601 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10278489 original size:26 final size:26
Alignment explanation
Indices: 10278453--10278505 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10278443 CCGATCCGAT
*
10278453 CTTAAACTGGGAACGAACTCTGTATG
1 CTTAAACTGGGAACGAACTCCGTATG
* *
10278479 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAACGAACTCCGTATG
10278505 C
1 C
10278506 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAACGAACTCCGTATG
Found at i:10278948 original size:893 final size:887
Alignment explanation
Indices: 10276851--10281227 Score: 5868
Period size: 897 Copynumber: 4.9 Consensus size: 887
10276841 ACTTCTTATG
* * *
10276851 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCC-ACGAAACGAGC-GTGCAGGGGGGCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCGACGAAACGAGCAG-G-AAGCGGGCA
* * *
10276914 CTACATCAGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
63 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
10276979 ATATCTTCATATTTCTGC-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATTGTCCCT
128 ACATCTTCATATTTCT-CTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
10277043 TAAGCCTTTACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
192 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * *
10277108 TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCCAAAGGATTTTTGGACCCAAACTTGGTAGACAT
257 TTTTGCGGTTCGGGATTTTTTAAAATTTTTT-CAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
10277173 GATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTT
321 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
**
10277238 TGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAG-
386 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCT-GT
* *
10277302 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGGCAAT
449 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
10277367 ATAACGGCCAAGTACAAGCACCCATCGCACATCGTGTGCGCACA-CCCACGGCCCCCCCGATCGC
514 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGC
* * *
10277431 TAGAACGCC-ATGCTGTCGGTCAGGTTCTCCGACGA---T---G-G-T-G-CCCCGGCGAAGAAA
578 CAGAAC-CCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCGACGAAGAAA
*
10277485 AATGCGGCACCAGCACATGCCTGAGCCCAACATGTGCTGCCGCAACCCTTGGTCC-AGTCCGATC
642 AATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTG-CGCAACCC-TGGTCCGA-TCCGATC
*
10277549 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
704 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
10277614 CGAAACGAGCGTGCAGGTGCTCAGCC-AGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGTTG
769 CGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCG
* * * * *
10277678 GGTCTCCCTCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGTTTGGT-TCGAT
833 GGTCTCCCTCTGCATGCTACCGATCCTACTGCCACAACCCTCGGTTTGATCT-GAT
* * *
10277733 CTTTGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-A-A---GC--G
* * * *
10277798 CAGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCTATAGGGTGGTAGTTGGGT
59 --GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
10277863 TTAGGCACATCTTCATATTT-T-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACGAT
122 TTAGGCACATCTTCATATTTCTCTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
10277926 GGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGGCCCGTTTTCTATTTTTCATGATTTT
185 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
10277991 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGACTTTTGGCCCCTAACTTGG
250 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCA-AAGGAGTTTTGGCCCCAAACTTGG
10278056 TAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
314 TAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
10278121 CAAGACTTTGTGACCATTTGAAAAAACTGTCCCCATTTTAGACACTTTAACGGCTACTAGCAGCA
378 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCA
* *
10278186 AACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGG
442 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
10278251 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCGGCCCCC
507 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCC
10278316 TCGATCGCCAGAACCCTAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCTCG
571 -CGATCGCCAGAACCC-AATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCC-CG
* * *
10278381 ACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTGGATCCG
633 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTG-CGCAACCCTGG-TCCG
* * *
10278446 ATCCGATCTTAAACTGGGAACGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
696 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
10278511 TCAACCCATGAAACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCCGGATGAGCAAG-TGGGGG
761 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCT-GGGG
** *
10278575 ATCGATCACGTC-CTCCTCTGCATGCTACCGATCCTACTGCCACAACCCTCGGTTTGGTCTGAT
825 ATCGATCGGGTCTC-CCTCTGCATGCTACCGATCCTACTGCCACAACCCTCGGTTTGATCTGAT
* *
10278638 CTTAGACGGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-A-CGGGCACTA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGAAGCGGGCACTA
*
10278700 CGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
66 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
10278765 TCTTTATATTTCTCTGTGCCAATGCCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
131 TCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
10278830 CCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACATTTT
196 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
** * **
10278895 AAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGAAATC
261 GCGGTTCGGGATTTTTTAAAATTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
10278960 CTTGTATTTTTGTTGGCATGCAAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
325 CTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
10279025 GACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTGGAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAA
* * *
10279090 TCTGAAATGCTATTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
453 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
10279155 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCTCCGATCGCCACAA
518 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAA
** * * **
10279220 CGCCAATGCTACCAGTCAGGTTCTCCG-CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAAAT
583 C-CCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTG-CCCGACGAAG-AAAAAT
* *
10279284 ACGGCACCAGGACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAG
645 GCGGCACCAGCACATGCCCGAGCCCAACATGTGCTG-CGCAACCCT-GGTCCGATCCGATCTTAG
* *
10279349 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAA
708 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
10279414 ACGGGCGTACGGGTGCTCAGCCG-CC-GAAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTC
773 ACGAGCGTGCGGGCGCTCAGCCGACCAG-AGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTC
* ** * ** *
10279477 TCCCTCTGCGTGCTGTCGATCCTGCTGCCGGAGCCCTCGGTTCT-ATCTGAT
837 TCCCTCTGCATGCTACCGATCCTACTGCCACAACCCTCGGTT-TGATCTGAT
* *
10279528 CTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGACGGGCAGGCAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC---G--ACGA--A-ACGAGCAGG-AAG
*
10279593 CGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGG
57 CGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
10279657 TTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
121 TTTAGGCACATCTTCATATTTCT-CTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
10279721 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCCCGTTTTCCATTTTTCATGATTTT
185 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
10279786 TGAAACTTTTTGCGGTTCGAGAATTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
250 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGG
* *
10279850 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAATAATTCAGCTAAAAACTCAAAGTGTAC
314 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
10279915 AAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAACAA
379 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG-CAGCAA
*
10279980 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGG
443 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
10280045 GCCAATATAAGGGTCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGGCCCCC
508 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* ** ** * * * *
10280110 AATCATC-GAAACCCTAATGCCATCGGTCAGGCTCTCCGACGATGCTTCGGGGATGGTGCCCTGA
572 GATCGCCAG-AACCC-AATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCC-GA
** * * ** * *
10280174 CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACTTTCAGTCCAA
634 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGC-GCAACCCT-GGTCCGA
* *
10280239 TCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTTCGTATGCCTAAGT
697 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * *
10280304 CAAATCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGAT
762 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGAT
* * * * * * ** * *
10280368 CGGTTGGGTCCCCCTTTGCATGCTGCCGATCCTACTGTCGTAACCCTC----CGATCCGAT
827 CGATCGGGTCTCCCTCTGCATGCTACCGATCCTACTGCCACAACCCTCGGTTTGATCTGAT
* * *
10280425 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACTACACAAGCGGGCGGGCAGGAAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--GA-AA-----CGAGCAGGAA-G
* * *
10280490 CGGGCACTACATCGGCCAGAGAGACGGTATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
57 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
10280555 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
122 TTAGGCACATCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
10280620 TCCCTTAAGCCTTCACATGAAGTTTCATGCCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
187 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
*
10280685 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTA
252 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCA-AAGGAGTTTTGGCCCCAAACTTGGTA
10280750 GACGTGATCCTTGTATTTTTTTTGGCATGC-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
316 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
10280814 GATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAAC
381 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG-CAGCAAAC
* *
10280879 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-ATTATGATGAGGAATAGGGGG
445 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT-TGATGAGGGATAGGGGG
* ** *
10280943 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGAAACCACCG
509 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCG
* * * * *
10281008 ATCGTC-GAAACCCCAATGCTGCCGGTTAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCAGC
573 ATCGCCAG-AA-CCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCGA-C
* *
10281072 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAATATGTGCTGCTGCAACCCTCGGTCCGGT
635 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGC-GCAACCCT-GGTCCGAT
* * * * *
10281137 CCGATCTTAGACTGGGAATGAACTCCCTATGCATAGAATGGGAATGAACTCCATATGCCTAAGCC
698 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
10281202 AACCGACGAAACGAGCGGGCGGGCGC
763 AACCCACGAAACGAGCGTGCGGGCGC
10281228 GGCGAGCGGG
Statistics
Matches: 3108, Mismatches: 297, Indels: 165
0.87 0.08 0.05
Matches are distributed among these distances:
881 2 0.00
882 47 0.02
883 1 0.00
886 1 0.00
888 2 0.00
889 4 0.00
890 374 0.12
891 390 0.13
892 39 0.01
893 464 0.15
894 30 0.01
895 7 0.00
896 12 0.00
897 641 0.21
898 74 0.02
899 3 0.00
900 200 0.06
901 308 0.10
902 227 0.07
903 3 0.00
904 9 0.00
905 267 0.09
906 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGAAGCGGGCACTA
CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
GCGGTTCGGGATTTTTTAAAATTTTTTCAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCAGAACCC
AATGCTGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAACATGTGCTGCGCAACCCTGGTCCGATCCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCTCCCTCTGC
ATGCTACCGATCCTACTGCCACAACCCTCGGTTTGATCTGAT
Found at i:10279373 original size:26 final size:26
Alignment explanation
Indices: 10279344--10279396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10279334 CCGATCCGAT
*
10279344 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10279370 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10279396 C
1 C
10279397 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10280275 original size:26 final size:26
Alignment explanation
Indices: 10280246--10280296 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10280236 CAATCCGATC
10280246 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
10280272 TTAGACTGGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
10280297 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:10281180 original size:26 final size:26
Alignment explanation
Indices: 10281144--10281194 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10281134 GGTCCGATCT
* *
10281144 TAGACTGGGAATGAACTCCCTATGCA
1 TAGAATGGGAATGAACTCCATATGCA
10281170 TAGAATGGGAATGAACTCCATATGC
1 TAGAATGGGAATGAACTCCATATGC
10281195 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCATATGCA
Found at i:10281917 original size:26 final size:26
Alignment explanation
Indices: 10281888--10281940 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10281878 CCGATCTGAT
*
10281888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10281914 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10281940 C
1 C
10281941 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:10282805 original size:26 final size:26
Alignment explanation
Indices: 10282776--10282828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10282766 CCGGTCCGAT
*
10282776 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10282802 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10282828 C
1 C
10282829 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10284619 original size:26 final size:26
Alignment explanation
Indices: 10284583--10284633 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10284573 GGTCCGATCT
*
10284583 TAGACTGGGAATGAACTCCCTATGCA
1 TAGAATGGGAATGAACTCCCTATGCA
*
10284609 TAGAATGGGAATGAACTCCGTATGC
1 TAGAATGGGAATGAACTCCCTATGC
10284634 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCCTATGCA
Found at i:10285004 original size:901 final size:897
Alignment explanation
Indices: 10281170--10285503 Score: 5911
Period size: 901 Copynumber: 4.8 Consensus size: 897
10281160 TCCCTATGCA
* * *
10281170 TAGAATGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGCGGCGAGC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCCGG-GC-G-GA-C
*
10281235 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTT
61 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
10281300 TAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGT
126 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
10281365 CCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGGCCCGTTTTCTATTTTTCATGATTTTTGA
191 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * *
10281430 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGACTTTTGGCCCTAACTTGGTAGA
256 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGA
*
10281495 CGTGATCTTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
321 CGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
10281560 ACTTTGTGACCATTTGAAAAAATTGTCCCCATTTTAGACACTTTAATGGCTACT-AGCAGCAAAC
385 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CAGCAAAC
* *
10281624 CTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
10281689 GAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCGGCCCCCCCG
514 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGCCCCCCCG
* * * *
10281754 ATCGCCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGACG
578 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * *
10281819 AAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCTG-TCGTAACCCT-GGATCCGA
643 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGG-TCCGA
* *
10281882 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGT
706 TCCGATCTTAGACTGGGAATGAACTCCGTATGCATAGAATGGGAATGAACTCCGTATGCCTAAGT
* * * * *
10281947 CAACCCATGAAACGGGCGTGCGGGTGCTCAACCGACCAGAGGGGCGAGATGAGCAAG-TAGGGGA
771 CAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGA
* * * * * * * * * *
10282011 TTGGTCACGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCA
835 TCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGTTC-GATCCGATCT
*
10282075 TAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGACGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGACGGGCA
* * * *
10282132 CTACGTCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGCTAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
10282197 ACATCTTTATATTTCT-CTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
10282261 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACA
195 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* *
10282326 TTTTACGGTTCGGGATTTTTTAAAATTTTTT-TGAAAGGA-TTTTCGGCCCCAAACTTGGTAGAC
260 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTT-GG-CCCAAACTTGGTAGAC
* * *
10282389 GAGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
** * *
10282453 TTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTG
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTG
* * * * *
10282518 GAAAATCTGAAATGCTATTTATGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
10282583 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCGGCCCCCCGATCG
517 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCG
* * * * * * *
10282646 TTGCAACGCCAATGCCACCGGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGCCCTGACGAAGA
582 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * *
10282711 AAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
647 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCGAT
* * *
10282776 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
712 CTTAGACTGGGAATGAACTCCGTATGCATAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
10282841 ATGAAACGGGCGTGTGGGTGCTCAGCCGG-CGGAAGGGGCGGGATGCGCAAGCTGGGGATCGGTC
777 ATGAAACGAGCGTGCGGGCGCTCAACCGGCCAG-AGGGGCGGGATGCGCAAGCTGGGGATCGGCC
* * * ** * *
10282905 GGGTCTCCCTCTGCGTGCTGTTGATCCTGCTACCGTAACCCTCGGTTC-AGTCTGATCT
841 AGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTC-GTTCGA-TCCGATCT
* * * * * *
10282963 TTGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAAACGGGCAGGCGGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG----CGGCCGGGCGGACG
* *
10283028 GGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTT
62 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* **
10283093 AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTACAGCTTGTAAATTCATACAATGGTC
127 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
10283158 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGGCCCGTTTTCTATTTTTCATGATTTTTGAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* *
10283223 ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
257 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGA
* * *
10283288 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTAGAAGA
321 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * * *
10283353 TTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGCCAACAAACTT
386 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCT
* * *
10283418 ATAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCC
451 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
10283483 ATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAAT
516 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GCCCCCCCGAT
* ** * * * * * *
10283548 CATCAAAACCCCAATGCCGTCGGTCAGGCTCTTCGACGATGCTTCGGTGATGGTGCCCTGACGAA
580 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * ** ** *
10283613 GAAAAATGCGGCACCAGCACATGCTCAAGCCCTGCATGTGCTACTGCAACTTTCAATCCAATCCG
645 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCG
* * * *
10283678 ATCTTAGATTGGGAATGAACTCTGTATG-ATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
710 ATCTTAGACTGGGAATGAACTCCGTATGCA-TAGAATGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * * * *
10283742 ATCATGGAACGAGCGTGCGAGCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGG
774 CCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGG
** * * * * *** *
10283807 CTGGGTCCCCTTTTACGTGCTACCGATCCTGTTGTTGCAA-CCT--TCCGATCCGATCT
839 CCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGTTCGATCCGATCT
* * * * *
10283863 TAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCGACTACACAAGCGGGCGGGCAGGAAGGCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGC-GG-A--CG
** * *
10283928 GGCACTACATCGGCCAGAGAGACGGTATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
62 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * ** *
10283993 AGGAACATCCTCATATTTCTGTGTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTC
127 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
10284058 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
192 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
10284123 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGA
257 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGA
10284188 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
321 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
10284253 TTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCT
386 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCT
* *
10284318 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-ATTATGATGAGGAATAGGGGGCC
451 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT-TGATGAGGGATAGGGGGCC
* * **
10284382 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCCGAAACCCCCG
515 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCG-CCCCCCCG
* * * * * *
10284447 ATCGTCGGAACCCCAATGCTGCCGGTTAAGTTCTCCGACGATGCTCTGGTGATAGTGCCCC-AGC
578 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-C
** ** * *
10284511 GAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAATATGTGCTGCTGCAACCCTCAGTCCGGT
642 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGAT
*
10284576 CCGATCTTAGACTGGGAATGAACTCCCTATGCATAGAATGGGAATGAACTCCGTATGCCTAAGTC
707 CCGATCTTAGACTGGGAATGAACTCCGTATGCATAGAATGGGAATGAACTCCGTATGCCTAAGTC
* *
10284641 AACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGACGGGATGCGCAAGCTGGGGATC
772 AACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATC
* * * * * * * *
10284706 AGCCAGGTCCCCCTCTACATGCTGTCAATCCTACTATCGTAACCCTCAGTTCGATCCAATCT
837 GGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTC-GTTCGATCCGATCT
* * * *
10284768 TAGACTTGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAACGAGTGTCCGGGCGGACGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGACGGGCA
* *
10284833 CTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGA
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
10284898 ACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
10284963 AAGCCTTCACGTGAAGTTTCATGCCAAGACTACTTGTTTTCTATTTTTCATGATTTTAGAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * *
10285028 TTTACGGTTCGGGATTTTTTTAAATTTTTTC-GAAAGGGGTTTTGGCCCGAAACTTGGTTGACAT
261 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCC-AAACTTGGTAGACGT
* *
10285092 GATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTT
324 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
10285157 TGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTA
* *
10285222 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * *
10285287 TAAGGGCCAAGTATCAGCACCCATCGCACAACATGTGCGCACACCCCTCAG---CCCCTATCGTC
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCGTC
* * ** *
10285349 GGAACCCCAATACCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACAAAGAAA
584 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* *
10285414 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCT
649 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCGATCT
* *
10285479 TACACTGGGAATAAACTCCGTATGC
714 TAGACTGGGAATGAACTCCGTATGC
10285504 CTAAGCCAAC
Statistics
Matches: 3021, Mismatches: 358, Indels: 109
0.87 0.10 0.03
Matches are distributed among these distances:
887 2 0.00
888 322 0.11
889 6 0.00
891 200 0.07
892 235 0.08
893 27 0.01
894 1 0.00
895 2 0.00
896 149 0.05
897 3 0.00
899 2 0.00
900 789 0.26
901 913 0.30
902 6 0.00
903 9 0.00
904 252 0.08
905 103 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGACGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCGTCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTA
GACTGGGAATGAACTCCGTATGCATAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
AACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCCAGGTC
CCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGTTCGATCCGATCT
Found at i:10286212 original size:26 final size:25
Alignment explanation
Indices: 10286176--10286227 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
10286166 CAAGTCCGAT
* *
10286176 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAATGAAC-CCGTATG
*
10286202 CTTAGGCTGGGAATGAACCCGTATG
1 CTTAGACTGGGAATGAACCCGTATG
10286227 C
1 C
10286228 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACCCGTATG
Found at i:10288679 original size:26 final size:26
Alignment explanation
Indices: 10288643--10288695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10288633 CCAGTCCGAT
10288643 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
10288669 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10288695 C
1 C
10288696 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10289583 original size:26 final size:26
Alignment explanation
Indices: 10289547--10289597 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10289537 CTTGTCCGAT
*
10289547 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10289573 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
10289598 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10290302 original size:898 final size:901
Alignment explanation
Indices: 10287904--10291358 Score: 5055
Period size: 895 Copynumber: 3.8 Consensus size: 901
10287894 CAGCATGTGT
* * * *
10287904 TGCCGTAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAATTCCTTATGCCTAAGCCAATC
1 TGCCGTAACCCTCAGTTCTGGTCC-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
10287968 GACGAAACG-A-GTGGACGGACGGGCGGGCACTACGCCGCCCAGAGAGACGGGATGCGCGAGCCG
65 GACGAAACGAACGTGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
10288031 TGTATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATTCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
10288096 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACT
195 TATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
10288161 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTCGAA
260 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
*** *
10288226 AGGATTTTCCTCCCTAAACTTGGTAGACATGATCCTCGTATTTTTTTT-GACATGCACAAAAAAA
325 AGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTTTTGGA-ATGCACAAAAAAA
* *
10288290 TTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGA
389 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
10288355 CACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAAGGGGTGTGAGTTC
454 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTC
*
10288420 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-ACATCAT
519 TCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *** * ** *
10288484 GTGCGCACACCCCCCAGCCCCCCCGATCGTTGGAACCGCAATGCCGTCGATCAAGTTCTCCGGCG
584 GTGCACACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCACCGATCAAGTTCTCCGGTG
* * * * * *
10288549 ATGCTCCAGAGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCTCGAGCCTAGTATG
649 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATG
* ** *
10288614 TACTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGATTG
714 TGCTGTCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGAATG
* ** * *
10288678 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTCAGCCAGCCAGAA
778 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
** * *
10288743 GGGTGGGATGCGCAAGCCGAAGATCGATCGAGTCCCCATCTACATGCTACCGATCTTGC
843 GGGTGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTACCGATCTTGC
* * * * *
10288802 TGCTGCAACCCTCGGTT-TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACC
1 TGCCGTAACCCTCAGTTCTGGTC-CATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
10288866 GACGAAACGAACGGGTGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGTGATGTGCAAGT
65 GACGAAACGAAC--GTGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
10288931 CGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATGCCATT
128 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
10288996 TTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
193 TTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
10289061 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
258 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* ** *
10289126 GAAGAATTTTTGGCCCCAAACTTTTTTAGACGTGATCCTCGTATTTTTTTTGGAATGCACAAAAA
323 GAAGGATTTTTGGCCCCAAAC-TTGGTAGACATGATCCTCGTATTTTTTTTGGAATGCACAAAAA
10289191 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
387 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
10289256 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGT
452 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGT
10289321 TCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
517 TCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
10289386 ATGTGCACACATCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAAGTTCTCCGG
582 ATGTGCACACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCACCGATCAAGTTCTCCGG
** * *
10289451 TGATGCTCCGGCGATGGTGCCCCGGGGAAGAAAAATGCAGCACCAGCACGTGCTCGAGCCCAGCA
647 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
* * * *
10289516 TATGCTGTCGTAACCCTTGGTCTTGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
712 TGTGCTGTCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAAT
** *
10289581 GGGAATGAACTCCGTATAACTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGA
777 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * ** * * * * *
10289646 GGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTACTGCCAATCTTGC
842 GGGGTGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTACCGATCTTGC
10289706 TGCCGTAACCCTCAGTTC-GGTTCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 TGCCGTAACCCTCAGTTCTGG-TCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
10289770 GATGAAATG-A-GCGGGCGGACAGGCGGGCACTGCGTCGGCCAGAGAGACGGGATGCGCAAGCCA
65 GACGAAACGAACGTGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
10289833 TGGATCGATAGGG-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
10289897 TATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGGGAAGTTTCATGGCGAGACGACT
195 TATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
10289962 CGTTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAATTCTTTCGGA
260 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * *
10290027 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTGTTGGAATGCACAAAAAAAT
325 AGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTTTTGGAATGCACAAAAAAAT
10290092 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
390 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
10290157 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCT
455 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCT
*
10290222 CGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATG
520 CGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
10290287 TGCGCACA------C--CCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGGTGA
585 TGCACACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCACCGATCAAGTTCTCCGGTGA
** * * *
10290344 TGCTCCGGCGATGGTGCCCCGGGGAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCTTGT
650 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
* * *
10290409 GCTGTTGCAACCCTCGGTCTTGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGAATGGG
715 GCTGTCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAATGGG
*
10290474 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
780 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* *
10290539 GTGGGATGCGCAAGCCGGGGATCGATCGAGTCCCTCTCTGCATGCTACTGATCTTGC
845 GTGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTACCGATCTTGC
* ** *
10290596 TACC-TCAACCCTCAG-TCTGGTAAGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAAC
1 TGCCGT-AACCCTCAGTTCTGGT-CCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * **
10290659 CGATGAAATGAACGGGTGGGCGAACGGGCAAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
64 CGACGAAACGAAC--GTGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * * ***
10290724 CCGTGGGTCGATAGGGGGGCAGGTGGGTTTAGGCGCATCTTCATATTTCTATGTGCCAATGCCAT
127 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
10290789 TTTTGTGGCTTGTAAATGCATACAATGGTCCCTTAAGCTTTCATC-TGAAGTTTCATGGCAAGAC
192 TTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCA-CGTGAAGTTTCATGGCAAGAC
* * * * *
10290853 GAATCGTTTTCTATTTTTCACGATTTTTAGAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTT
256 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
10290918 TGGAAGGATTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATACACAAAA
321 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTTTTGGAATGCACAAAA
* *
10290983 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTC
386 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
10291048 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
451 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAG
* * *
10291113 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCGTCGCACAT
516 TTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
10291178 CATGTGCACACACCCCCCCGGCCCCCCGATCGTCGGAACCCTAATGCCACCGATCAGGTTCTCCG
581 CATGTGCACACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCACCGATCAAGTTCTCCG
* * * * *
10291243 ATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGAAGATGCTCGAGCCCAGC
646 GTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
* * * * * *
10291308 GTGTGCTGCCGTAACTCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
711 ATGTGCTGTCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAATGAACT
10291359 CCATATGCCT
Statistics
Matches: 2310, Mismatches: 218, Indels: 53
0.90 0.08 0.02
Matches are distributed among these distances:
889 4 0.00
890 334 0.14
891 1 0.00
892 1 0.00
894 58 0.03
895 413 0.18
896 1 0.00
898 305 0.13
899 192 0.08
900 57 0.02
901 1 0.00
902 244 0.11
903 359 0.16
904 336 0.15
905 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TGCCGTAACCCTCAGTTCTGGTCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAACGTGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGATTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTTTTGGAATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCACACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCACCGATCAAGTTCTCCGGTGAT
GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
CTGTCGCAACCCTCGGTCTTGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAATGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
TGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTACCGATCTTGC
Found at i:10290487 original size:26 final size:26
Alignment explanation
Indices: 10290437--10290489 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10290427 CTTGTCTGAT
* **
10290437 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10290463 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10290489 C
1 C
10290490 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:10291993 original size:718 final size:716
Alignment explanation
Indices: 10290601--10292677 Score: 3137
Period size: 718 Copynumber: 2.9 Consensus size: 716
10290591 CTTGCTACCT
* * * *
10290601 CAACCCTCAGTCTGGTAAGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
10290666 ATGAACGGGTGGGCGAACGGGCAAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGG
66 ATGAACGGGTGGGCG-ACGGGCGAGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGA
* * *
10290731 TCGATAGGGGGGC-AGGTGGGTTTAGGCGCATCTTCATATTTCTATGTGCCAATGCCATTTTTGT
130 TCGATA-GGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
* * *
10290795 GGCTTGTAAATGCATACAATGGTCCCTTAAGCTTTCATC-TGAAGTTTCATGGCAAGACGAATCG
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-CGTGAAGTTTCATGGCAAGACGACTCG
*
10290859 TTTTCTATTTTTCACGATTTTT-AGAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAA
258 TTTTCTATTTTTCACGATTTTTGA-AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA
* *
10290923 GGA-TTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATACACAAAAAAAA
322 GGAGTTTTT-GCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
10290987 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGAC
386 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
10291052 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCT
451 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
10291117 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGC-ACCAGCACCCGTCGCACATCAT
516 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-CTACCAGCACCCATCGCACATCAT
* * * * * * *
10291181 GTGCACACACCCCCCCGG-CCCCCCGATCGTCGGAACCCTAATGCCACCGATCAGGTTCTCCGAT
580 GTACGCACA-CCCCCCGGCCCCCCCGATC-TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* *
10291245 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT-ACGGCACCAGAAGATGCTCGAGCCCAGCG
643 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGA-GGCACCAGAACATGCTCGAGCCCAGCA
*
10291309 TGTGCTGCCG
707 TGTGCTGCAG
* * * *
10291319 TAACTCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
10291384 ACGAGCGGGCGGGCAGACGGGCGAGCACTACGTCGGCCAGAGAGACAGGTTGCGCAAGCTGTGGA
66 ATGAACGGGTGGGC-GACGGGCGAGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGA
* * * *
10291449 TCGATAGGGTGCTGGGTGGGTTTAGGCACATCTTCGTATTTCTGTGTGCC-ATGCCATTTCTATG
130 TCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
* *
10291513 GCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
10291578 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTCGGAAGG
260 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT-GGAAGG
** * * * *
10291643 AGTTTTTGCCCCAAAATTGGCAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCA
324 AGTTTTTGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
10291708 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
10291773 TTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
10291838 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTAC
519 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTAC
*
10291903 GCACACCCCCCGGCCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
584 GCACACCCCCCGGCCCCCCCGATC-TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * * *
10291968 TCCGACGATGTTGCCCTGGCGAAGAAAAATGAGGCACCAGCACATGCTTGAGCCCAGCATGTGCT
648 TCCGACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGAACATGCTCGAGCCCAGCATGTGCT
10292033 GCAG
713 GCAG
** *** * *
10292037 CAACCCTCGAACCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
1 CAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
10292102 ATGAACGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGA
66 ATGAACGGGTGGGC-GACGGGCGAGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGA
* * * * **
10292167 TTGATAGGGTGGTAGGTGGGTTTAGGCCCATCTCCATATTTCTACATGCCAATGCCATTTTTATG
130 TCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
*
10292232 GCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
10292297 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGTAGGA
260 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
* *
10292362 GTTTTGGCCCCAAACCTGGTAGACATGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAG
325 GTTTTTGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
10292427 CTAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
10292492 TAATGGGTACTGGTAGCAAACCTGTAAAATAC-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
455 TAATGGCTACTGGCAGCAAACCTGTAAAAT-CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
10292556 GGTTTGATGAGAGATAGGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTA
519 GGTTTGATGAGGGATAGGGG-GCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTA
* * * *
10292621 CGCACACCCCCCGACCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTC
583 CGCACACCCCCCGGCCCCCCCGATCTCGA-AACCCCAATGCCGCCGGTCAGGTTCTC
10292678 GGAAGGAGTT
Statistics
Matches: 1230, Mismatches: 116, Indels: 25
0.90 0.08 0.02
Matches are distributed among these distances:
716 1 0.00
717 138 0.11
718 859 0.70
719 232 0.19
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (716 bp):
CAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ATGAACGGGTGGGCGACGGGCGAGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGAT
CGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
TTTTTGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTACGC
ACACCCCCCGGCCCCCCCGATCTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
GACGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGAACATGCTCGAGCCCAGCATGTGCTGCA
G
Found at i:10293107 original size:26 final size:26
Alignment explanation
Indices: 10293078--10293130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10293068 CCGGTCCGAT
10293078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10293104 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10293130 C
1 C
10293131 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10294083 original size:893 final size:894
Alignment explanation
Indices: 10292680--10297749 Score: 6044
Period size: 903 Copynumber: 5.7 Consensus size: 894
10292670 AGGTTCTCGG
** * * * * *
10292680 AAGGAGTTTTGGCCCTGAACTTGGTAGACATGACCCTTGTATTTTTGTTGACATGCACAAAAACA
1 AAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
10292745 TTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTTAGA
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
10292810 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAA-GGGGCGTGAGTT
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTT
* * *
10292874 CTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCAC--C-
195 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
10292936 ----C-CTC-CCCCTC-GCCCCCCCGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-TG
260 TGTGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCG
* *
10292992 A-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGTCCGAGCCCAGCATGTGCTA-C
325 ACCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC-AGC
*
10293055 CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
389 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * ** *** ** *
10293120 ACTTCGTATGCCTAAGTCAACCCATGAAATAAGCGTGTAGGCGCTCAATCGACCAGAGGGGC-AG
454 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGA-
* * * * * *
10293184 GATGCGCAAGTCGGGGATCGATCGGGTCCTCGTCAGCGTGCTACCAATCCTGTTGCTGTAACCCT
518 GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCA-CGTGCTACCAATCCTGCTGCTGCAACCCT
* * * * * **
10293249 TGGCCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGGCAACCAACAAAACGAGTG
582 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACG
** * * * * *
10293314 GGCGGGCGGGAAGGCAGGTACAACGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAG
647 GGCGGGCGGGCGGGCTGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
10293379 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATGCCATTTTTATGGCTTGTA
712 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* *
10293444 AATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTTATGGCAAGACAACTCGTTTTCTATT
777 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
* *
10293509 TTTCACCATTTTTGAAACTTTTTACGGTTCATGATTTTTTAAAATTTTTTCGA
842 TTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGA
* * *
10293562 AAAGAGTTTTGGCCCCAAACGTCGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
10293627 TTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
10293692 CACTCTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTTAAGGGGGTGTGAGTT
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTT
* * *
10293757 CTTAAGGTTTGATGAGGGATAGGGGGCCAATACACGGGCCAAGTACCAGCACCCATCGCACATCA
195 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
10293822 TGTGCACACACCCCCCAGCCCACCTGATCGCTGGAACCCCAATGCTGCCGGTTAGGTTCT-C-CG
260 TGTGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCG
*
10293885 A-CGATGGTGCCCCGACGAAGAAACATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAGCC
325 ACCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAGCC
* * * * *
10293949 GTAACCCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCTCAGACTAGGAATGAA
390 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
10294014 CTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCAGTGGGGCGAGA
455 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGA
** * * ** * * *
10294079 TGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCTGATCCTACTACCAG-AACCCTC
520 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTC-ACGTGCTACCAATCCTGCT-GCTGCAACCCTC
* * * *
10294143 AGTTCGGT-TCGATCTTAGACTGAGAATGAACTCTGTATGCCTAGGCCAACCGACGAAACG-A--
583 GGTCCGGTCT-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACG
** * *
10294204 -GCGGGC-GG-AAG--GGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATTG
647 GGCGGGCGGGCGGGCTGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
10294264 GGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
712 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
*
10294329 AATTCATACAATGGTCCCTCAAGCCTTCACGTG-A----C-T---------A-T--TTTTC-A--
777 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATT
*
10294373 --T---GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
842 TTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGA
* * * *
10294421 AAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTA-TTTTGTTGGCAAGCACAAAAACA
1 AAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
10294485 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGA
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
10294550 CACTTTAGTGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG-GAGAGTTC
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
10294613 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGTGCTAAGTACCAGCACCCATCGCACATCAT
196 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
10294678 GTGCACACACGCCCCCGGCCCCCCCGATCGATCGAAACTCAATGCTGTCGGTCAGGTTCTCCGAC
261 GTGCACACAC-CCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-C
** *
10294743 GATGCTCCGACGATGGTGCCCCGACGAAGAGCAATGCGGCACCAGCACATGCCCGATCCCAGCAT
324 GA-----C--CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * *
10294808 GTGCTGTCGCAAACCTCGAG-CCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACT
382 GTGCAGCCGCAACCCTCG-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
10294872 GGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTACGGGTGCTCAGCTGGCCAAA
446 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGA
* * * * * * * * *
10294937 GGGGTGGGATGCGCACGCCGGGGATCAACCGGGTCCCCCTCTGCGTGTTGCTAATCCTACTGCTG
511 GGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC-ACGTGCTACCAATCCTGCTGCTG
** * * *
10295002 CAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
575 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * *
10295067 ACGAACGGGCGGGCGCGCGGGCTGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTCGA
640 ACGAACGGGCGGGCGGGCGGGCTGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
10295132 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
705 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* **
10295197 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTT
770 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
* * *
10295262 TTCTATTTTTCACGATTTTTGATACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGG
835 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGA
* ** * * * * *
10295322 CAGGA-TGTTTGAACCCAAACTTGGTAAACGTGATGCTTGT-TGTTTTGTTGGCATGCAGAAAAC
1 AAGGAGT-TTTGGCCCCAAACTTCGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAA
*
10295385 AATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCA
64 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * * * *
10295449 GACACCTTAGTGGCTACTGGCAGCAAACCTGCAAAATTTCAGACGCTCTTTAAGGGGGTGCGAGT
129 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
10295514 TCTTGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGGACCCATCACACATC
194 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
10295579 ATGTGCGC-CTACCCCCCCGGCCCCCCCGATCGCCT-AAACCCCAATGCCGCCGGTCAGGTTCTC
259 ATGTGCACAC-A-CCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTC
** *
10295642 CGGCGATGCTCCGACGGTGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCA
321 C-GCGA----CCGA---TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
10295707 GCATGTGCTGCCGCAACCCTCGTTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
378 GCATGTGCAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
*** * * ** *
10295772 ACTGTTTATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTTAGTAGGTC
443 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCC
* * * * * *
10295837 AGAGGGGTGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCT--C-TG---CCGATCTTACTGC
508 AGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCACGTGCTACCAATCCTGCTGC
* * * * * *
10295896 TACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG
573 TGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
* * *
10295961 AAACGAGCGGGCGGATGGGCGGGCGGGCGGGCACTACG-TAGGCCAGAGAGACGAGATGCGCAAG
638 AAACGAACGGGC----GGGCGGGCGGGCTGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
10296025 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
698 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
10296090 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGTAAGACA
763 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACA
* * ** ** *
10296155 ACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTGAAATTTTTTC
828 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
*
10296220 GG
893 GA
* ** * * * * * *
10296222 AAGGAGTTTTGACCGTAAACTTGGTAGACATAAGCCTTGTATTTTTTTTGGCATGCACAAAACAA
1 AAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * * *
10296287 TTCAGCTAAATACTCAAAGTGTACAACATTTTTGTGACCAATTGAAAAAAGTGTCCCAATTTCAA
66 TTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
10296352 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGGTTTGAGT
130 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGT
*
10296417 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATC
194 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
10296482 ATGTGCGCACACCCCTCTGGCCCCCCCGATTG-TCGGAACCCCAATGCCGCAGGTTAGCTTCTCC
259 ATGTGCACACACCCC-CCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
10296546 GGCGATGCTCCGGCGATGGTGCCCCG--GTAGAGAAAAATACGGCACCAGCACATGCCTGAGCCC
322 -GCGA-----C--CGATGGTGCCCCGACG-A-AGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * **
10296609 AGAATAG-GCTA-CCGCAACCCTCGGTCTGGTCCGATCTTAGACTTGGAATGAACTTTGTATGCT
377 AGCAT-GTGC-AGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
10296672 TAGA-TGGGGAATGAACTCTC-TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGC
440 TAGACT-GGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
10296735 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACTGAGTCCCCCTCTGCATGCTACTAATCC
503 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC-ACGTGCTACCAATCC
* ** *
10296800 TGCT-ATCGCAACCCTCGGTTTGATCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCC
567 TGCTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCC
* * * * *
10296863 AACCGATGAAAAGAACGGGCTGACGGGCGGGCTGGCACTACGCCGGCCAGAGAGACGGGATGCGC
630 AACCGACGAAACGAACGGGCGGGCGGGCGGGCTGGCACTACGCTGGCCAGAGAGACGGGATGCGC
*
10296928 AAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
695 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
10296993 CATTTTTATGGCTTGTAAATTCATACAA-GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
760 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * *
10297057 ATGACTCGTTTTCTATTTTTCACGATTTTTGATACTTTTTGCGGTTCAAGATTTTTTAAAATTTT
825 ACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTT
*
10297122 TTTGA
890 TTCGA
* * *
10297127 AAGGATTTTTGGCCCCAAACTTCGTAGACGTGATGCTTGTTTTTTTGTTGGCATGCACAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
10297192 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
10297257 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
10297322 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAACTACCAGCACCCATCGCACATGAT
196 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
10297387 GTGCACACACCCCCCGG-CCCCTCGATCG-TCGAAACCCCAATGCTGTCGATCAAGTTCTCCGGC
261 GTGCACACACCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGCCGGTCAGGTTCTCC-GC
* * *
10297450 GATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGACCCCAAG-A
324 GA----CC-G--ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCA
* * ** *
10297514 TG-GACTGCTGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
381 TGTG-CAGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * **
10297578 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGCACTCAATCGGCCAG
445 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAG
* * * * * * * * *
10297643 AGGGGCGAGATGTGCAAGTCGGGGATCGGCTGGGTCCCCCTTTACGTGCTATCGATCTTGCTGCC
510 AGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-TCACGTGCTACCAATCCTGCTGCT
* *
10297708 GCAACCCTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTC
574 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
10297750 CATATGCTTA
Statistics
Matches: 3606, Mismatches: 458, Indels: 228
0.84 0.11 0.05
Matches are distributed among these distances:
855 76 0.02
856 44 0.01
857 6 0.00
858 123 0.03
859 83 0.02
862 1 0.00
866 3 0.00
867 272 0.08
868 2 0.00
869 1 0.00
870 1 0.00
871 6 0.00
872 1 0.00
873 1 0.00
875 139 0.04
876 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
882 165 0.05
883 66 0.02
884 1 0.00
885 138 0.04
887 2 0.00
888 2 0.00
889 6 0.00
890 2 0.00
891 3 0.00
892 7 0.00
893 309 0.09
894 5 0.00
896 81 0.02
898 2 0.00
899 3 0.00
900 308 0.09
901 428 0.12
902 143 0.04
903 704 0.20
904 90 0.02
905 168 0.05
906 135 0.04
907 2 0.00
909 1 0.00
910 72 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
AAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCACACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGA
CCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGAGAT
GCGCAAGCCGGGGATCGACCGGGTCCCCCTCACGTGCTACCAATCCTGCTGCTGCAACCCTCGGT
CCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCG
GGCGGGCGGGCTGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGA
Found at i:10294874 original size:26 final size:26
Alignment explanation
Indices: 10294838--10294890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10294828 CCGATTCGAT
* *
10294838 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10294864 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10294890 C
1 C
10294891 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10297581 original size:26 final size:26
Alignment explanation
Indices: 10297545--10297597 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10297535 CCAATCCGAT
10297545 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10297571 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10297597 C
1 C
10297598 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10297766 original size:26 final size:26
Alignment explanation
Indices: 10297730--10297782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10297720 TCGGTCTGAT
10297730 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10297756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10297782 C
1 C
10297783 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10297835 original size:185 final size:185
Alignment explanation
Indices: 10297518--10297941 Score: 555
Period size: 185 Copynumber: 2.3 Consensus size: 185
10297508 CCAAGATGGA
* * ** * *
10297518 CTGCTGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGA
1 CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * *
10297583 ATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGCACTCAATCGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCACTCAAGCGGCCAGAGGGG
* ** * * * * * *
10297648 CGAGATGTGCAAGTCGGGGATCGGCTGGGTCCCCCTTTACGTGCTATCGATCTTG
131 CGAGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTACATGCTACCAATCCTG
* *
10297703 CTGCCGCAACCCT-AGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
1 CTGCCGCAACCCTCA-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * *
10297767 AATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGTCGCTC-CGCAGGCCAGAGG
65 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCACTCAAGC-GGCCAGAGG
* *
10297831 GGCGAGATGCGTAAGTCGGGGATCAACCGGGTCCCCCTCTGCATGCTACCAATCCTG
129 GGCGAGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTACATGCTACCAATCCTG
*
10297888 CTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
10297942 CTAAGTCAAC
Statistics
Matches: 205, Mismatches: 31, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
184 1 0.00
185 203 0.99
186 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCACTCAAGCGGCCAGAGGGG
CGAGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCTACATGCTACCAATCCTG
Found at i:10299729 original size:897 final size:869
Alignment explanation
Indices: 10297886--10305903 Score: 7895
Period size: 896 Copynumber: 9.1 Consensus size: 869
10297876 CTACCAATCC
* * *
10297886 TGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * ***
10297951 CTGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGGGGCGGGATGTGTAA
66 CCCACG-AA--A-CGAGCGTA----CGGGC--GCTC-A-GCCGGCCAGAGAGGCGGGATGCACAA
* * ** * * * ** * * * * *
10298016 GCTGAGGATTTGTCGGGTCCCCCTCTACATGCTACCAATCCTGCTGCCGCAACCATTGGTCTGGT
119 GCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGTCGATCCT-ATGCCGCAACCCTCGGTCCGGT
* * * **
10298081 CTGATCTTAGACTAGGAATGAACTCCGTATGCCTATGCCAACCGATGAAAC-A----GCGGTTGG
183 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGG
* * * * *
10298141 GCGGGCACTACGTCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGCGTAGTAGGTGGG
248 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
10298206 TTTAAGCACATCTTCATATTTCTACATGCCAATGCTATTTCTATGGCTTGTAAATTCATACAATG
313 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
10298271 GTCCCTTAAGCCTCCACGTGAACTTTCATGGCAAGATGACTCGTTTT-T-TTTTTCACGATTTTG
378 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTC
*
10298334 GAAACTTTTTAT-GGTTCTAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
443 GAAACTTTTT-TCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
10298398 TAGACGTGATCCTTGTATTTTTGTTCGTATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTAC
507 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
10298463 AAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
572 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
10298528 ACCTATAAAATCCCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
637 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * *
10298593 CCCAATATAAGGGCCAAGTACCCA-CACCCATCGCACGTCATGAGAGCAC-CCCCTCAGGCCCCC
702 GCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGG-CCCC
* * ** * *
10298656 CCGATCGTCGGAACCCTAACT-CCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTC
764 CCGATCGACGG-ACCCCAA-TGCCGTCGGTCAGGTTCTCCGACGATGCTCC-ACGATGGTGCCCC
* * * * * *
10298720 GGCGAAGAAAAATGCAGCACCCGTACATGCCCGAGCCCAACATG
826 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* *
10298764 TGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTCCGTACCTTTAGATTGG
1 TGCTGCCGCAACCCTC-G---G------TC-----C---G---G---TCCG-ATC-TTAGACTGG
* * * *
10298829 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCTAGAGG
40 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGA
* * * * * * * *
10298894 GGTGGGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTATGTGCTGCCAATTCTATGGCCACA
105 GGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGTCGATCCTAT-GCCGCA
* * * * *
10298959 ACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAAGTCTGTATGCCTAAGCCAACCAATGAAAC
169 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
10299024 GAGCGGGCGGACGGGCGGGCACTACGCCAGCTAGAGAGATGGGATGCGCAAGCCGTGGATCGATA
234 GAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
10299089 GGGTGGTATGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGT
299 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * *
10299154 AAATTCTTACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTTGTTTTTTTA
364 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTG-TTTTCTA
* * *
10299219 TTTTTCATGATTTTCGAAACTTTTTTCGGTTTGCGATTTTTTAAAATTTTTTCGGAAGGA-TTTT
428 TTTTTCACGATTTTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
10299283 GGCCCTGGTTGAGACCAAA-TTAGTAGACGTGATTCTTGTA-TTTTGTTGGTATGCACAAAAAAA
493 GG-CC---------CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
** * * * * *
10299346 AGCAGCTTAAAAATTCGAAGTGTACAAAGATTTTTGTAACCATTTG-AAAAAGTATCTCGATTTC
548 TTCAGC-TAAAAACTCGAAGTGTAC-AAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
10299410 AAGACACTTTAATCGGCTGACTGGCAGCAAACCCGTAAAAATCCCAAATGCTCTTTAAAGGGGGT
610 -AGACACTTTAAT-GGCT-ACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTT-AAGGGGGT
*
10299475 GTGAGTTCTCGGAGGTTTGATGAGGGATAGGGGGGCCAATATAAGGGCCAAGTACC-GTATCCCA
670 GTGAGTTCTC-GAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCA
* * * **
10299539 TCACAGCATCAATGTGAGCACACCCCCCCAGCCCCCCCG-TCGTACGGACCCCAATGCCACCGGT
732 TCGCA-CATC-ATGTGCGCACA-CCCCCC-GGCCCCCCGATCG-ACGGACCCCAATGCCGTCGGT
* ** * *
10299603 CA-GTTCCTCCGGCGATGCTACCAACGTTATTGGTGGCAATCGACGAAGAAAAATGCGGCACCAA
792 CAGGTT-CTCCGACGATGCT-CC-ACG--A-TGGT-GC-CCCGACGAAGAAAAATACGGCACCAG
10299667 CACATG-CCGAGCCCA-CATG
849 CACATGCCCGAGCCCAGCATG
*
10299686 TGCTAGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACACTTAGACTG
1 TGCT-GCCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GG---GAA-T--G-------A-AC--
* * * *
10299751 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGTCGGCCAGAG
48 ----T---C--CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAG
* * * * * * ** *
10299816 GGGCGCGATGCGCAAGCCGGGGATCGGTCAGGTCCCTCTCTGCGTGCTGTCGATCCTGCTAG-CG
104 AGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGTCGATCCT-AT-GCCG
* ** * *
10299880 CAACCCTCAGTTTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAA
167 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
10299945 ACGAGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTTGATCGA
232 ACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
10300010 TAGAGTGGTAGGTGAGTTTAGGCACATGTTCATATTTCTACATGCCAATGCCATTTGTATGGCTT
297 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
** *
10300075 GTAAAATT-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTT
362 GT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTC
* * * * *
10300139 TATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGGGTT
426 TATTTTTCACGATTTTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
10300204 TTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTTTTGCCATGGA-AAAAAAATTCAGCTA
491 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
10300268 AAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAA
556 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
10300333 TGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
621 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
10300398 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCAC
686 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
10300463 ACCCTCCCGGCCCCCTGATC-ACCAGAACCCCAATGCCGTCGGTCAGGTGCTCCGACGATGCTCC
751 ACCC-CCCGGCCCCCCGATCGA-C-GGACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* * **
10300527 AGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATG
813 A-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
** * * * * * *
10300585 TGCTGCCATAAGCCTCTGTCCGGTCCTATCATAGACTAGGAATGAACTCCGTATGCCTAAGACAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
10300650 CCCACGAAACGAGCATACGGGCGTTCAGCCAGCCA-AAAGGGCGAGATGCGCAAGCCCGGGATCG
66 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGA-GGCGGGATGCACAAGCCGGGGATCG
** * ** * * * * * ** * *
10300714 ATCGGGTCCCCTTCTGCGTGCTGACGATCCTGTTACTGCAACCCTCGGT-TGGAAATGATCGTGG
130 GCCGGGTCCCCCTCCACGTGCTGTCGATCCT-ATGCCGCAACCCTCGGTCCGG-TCTGATCTTAG
* * * *
10300778 ACTGGGAATGAACTTCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGACGGGCACTA
193 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTA
* * * ** * **
10300843 CGCCGGCCAAAGAGATGTGATGCGCAAGCTATGGATCGATA-GGT-GTTGGTGGCATTAGGCACA
258 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
10300906 TCTTCAATATTTAATGCATGCCAATGAGCATTTTTAT-GCTTGTAAATTCACACAATGGTCCTCT
323 TCTTC-ATATTT-CTGCATGCCAATG-CCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CT
* * * ** *
10300970 TTA-CAC-TC-TGTGAAGTTTCATGGAAAGACGAC-TCATTTCT-TTTTTCATGATTTT-GAAAC
384 TAAGC-CTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCGAAAC
* *
10301029 -TTTTTGGGTTCG-GAATTTTTTTGAAAA-TTTTTC-GAAGGAGTTTTTGG-CCCAAACCTGGTA
448 TTTTTTCGGTTCGAG-A-TTTTTT-AAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTA
* **
10301089 -ACATGAT-C-T-TAACTTTGATTGGCATGCAC-AAAAAATTCAGCTAAAAACTCG-AGTGTACA
509 GACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
10301148 AGATTTTGT-ACCA-TTGAAAAAAAGTGTCCCAATTCCGAAACACTTTTATGGCTACTGGCAGCA
573 AGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCA
* * *
10301211 ACACCTGTAGAAATCTC-AAT-CTC-TTAAAGGGGTGTGGAATTCTCGAGTTTTGA-GA-GGATA
636 A-ACCTGTA-AAATCTCAAATGCTCTTTAAGGGGGTGT-GAGTTCTCGAGGTTTGATGAGGGATA
*
10301271 -GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCC
698 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * ** * **
10301335 TCCGATTG-CAGGAAGCTTAATGCCGTCGGTCAAGTTCTCCG-C-ACTGCTCCGGTGATGGTGCC
763 CCCGATCGAC-GG-ACCCCAATGCCGTCGGTCAGGTTCTCCGACGA-TGCTCC-ACGATGGTGCC
* * *
10301397 CCGACGTAGAAAAATA-GACACCAGCACATGCCCGAGCCCAACATG
824 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* *
10301442 TGCCGTCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGG
1 TGCTGCCGCAA-CC-C---TCG----G-TC-----C---G---G---TCCG-AT-CTTAGACTGG
* *
10301507 GAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGA
40 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGA
* * ** *
10301572 GGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCCACATGTTACCGAT-CTGTTGCCGCA
105 GGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGTCGATCCT-ATGCCGCA
* * * * *
10301636 ACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAACCCAACCGACGAAAC
169 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* ** * * * * *
10301701 GAGTGGGCGGGGGGGCAGGCCCTACGCCGGCCCGAGAGACTGGATGTGCAAGCCGTGGATCGATA
234 GAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
10301766 GGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGC
299 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
10301831 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-ACGACTTGTTTTCTAT
364 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
** * *
10301895 TTTTCACGATTTTCGAAACTTTTTGAGGTTCAAGATGTTTTAAAATTTTTTCGGAAGGAGTTTTG
429 TTTTCACGATTTTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
10301960 GGCCGAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA
494 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
10302025 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCTCATTTCAGACACTTTAATGG
559 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
10302090 CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGTTTGA
624 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
** *
10302155 TGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGTACATCATGTGCGCACACC
689 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * **
10302220 CCCCAGGCCCCCCGATTGTA-GGAACCCTAATGTTGTCGGTCAGGTTCT-C--C---G----ACG
754 CCCC-GGCCCCCCGATCG-ACGG-ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCACG
** ** * * *
10302274 ATGGTGCCCCGACGAAGAAAAATGTGGCAGTAGCACATGCCTGAGCCTAGTATG
816 ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
10302328 TGCTGTCGCAACCTTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-C-----C---G--T--
*
10302393 GAATGAACTCTGTATGCCAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGAG
53 --ATG--C-C----T---AAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGAG
* * *
10302458 GCGGGATGCACAAGCCGGGGATCGGTCCGGGTCCCCTTCCACATGCTG-CTGATCCTACTATCCG
106 GCGGGATGCACAAGCCGGGGATCGG-CCGGGTCCCCCTCCACGTGCTGTC-GATCCTA-T-GCCG
* *** * * *
10302522 TAACCCTTTATTCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGCCAACCGACGAA
167 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * *
10302587 ACGGGAGGACGG-GGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGA
232 ACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
10302651 TAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTT
297 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* **
10302716 GTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
362 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
* * * ** * * ** *
10302781 ATTTTTCATGATTTTTGAAAATTTTTGAGCTTCGAGGATTTTTTAGAATTTTTTCGGAATAATTT
427 ATTTTTCACGATTTTCGAAACTTTTTTCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTT
*
10302846 TTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
491 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * *
10302911 AAAA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACGCTTAAA
556 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
10302975 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCCTTAAGCGGGTGTGAGTTCTCGAGGTT
621 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
10303040 TGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
686 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
10303105 ACCCCCCGGCCCCCCGATCGCCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACAATGCTCTGA
751 ACCCCCCGGCCCCCCGATCGACG-GACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-CA
* *
10303170 CGATGGTGCCCCGACGAAGAAAAATACGGCACTAGCACATGCCCAAGCCCAGCATG
814 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
10303226 TGCTACCGTAACCCTCGGTCTGATCCGATCTTAGATTGGGGGTGAACTCCATATGCTTAGATTGG
1 TGCTGCCGCAACCCTC-G---G-T-C---C-----------G-G---TCC-GAT-CTTAGACTGG
10303291 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGA
40 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGA
* * * * * * * *
10303356 GGTGGGATGCACAAGTCGGGGATCAGCCGAGT-CCCCTTCACATGTTGTCGATCCTACTGCCACA
105 GGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGTCGATCCTA-TGCCGCA
* * *
10303420 ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGACAAAAC
169 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * * * *
10303485 GAGCGGGCAGG-GGGGCGAGAATTATGCCGGCCAGAGAGACAGGATGTGCAAGTCGTGGATCGAT
234 GAGCGGGC-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
10303549 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGTCATTTTTATGGCTTG
298 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * *
10303614 TAAATTCATACGATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTCGTTTTCTA
363 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
* * * *
10303679 TTTTTCACGATTTTCAAAACTTTTTTAGGTTCAAGATGTTTTAAAATTTTTTCGGAAGGAGTTTT
428 TTTTTCACGATTTTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * *
10303744 GGGCCCAAACTTGGTAGAAGTGATCC-TGATATTTTTGTTGGCATGCACAAAACAATTCAGCTAA
493 GGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
10303808 AAACTCG-AGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAAC
557 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
10303872 GGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTCTGAGTTCTCGAGGTTT
622 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
10303937 GGTGAGGGATAGAGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTTCGCACA
687 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
10304002 CCCCCCGGCCCCCCGATTG-CTGAAACTCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGA
752 CCCCCCGGCCCCCCGATCGAC-G-GACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-A
* **
10304066 CGATGGTGCCCCAACGAAGAAAAATACGGCATTAGCACATGCCCGAGCCCAGCATG
814 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* *
10304122 TGCTACCGTAACCCTTGGTCTGGTCCGATCTTAGATTGGGAGTAACGCCGTATGCTTAGACTGGG
1 TGCTGCCGCAACCC----TC-GGT-C---C---------G-GT----CCG-AT-CTTAGACTGGG
* * ** * * * *
10304187 AATGAACTCCGTATGCTTGAGTCAACAGACAAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGAG
41 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGAG
** * ** * * * * *
10304252 GTAGGATGCACAAGCCAGGGATTAGTCGGGT-CCCCTTCACATGTTGTCGATCCTGCTGCCGCAA
106 GCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCCACGTGCTGTCGATCCT-ATGCCGCAA
* * * * *
10304316 -CCTCGATCTGGTCTAATCTTAGACTAGGAATGAATTCCGTATGCCTAAGCCAACCGACGAAACG
170 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * ** * * * * *
10304380 AGTGGGC-GAGCAGTCGGGCACTATGCTAGCCAAAGAGGCAGGATGCACAAGCCGTGTATCGATA
235 AGCGGGCGGA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * * *
10304444 AGGTGGTAAGTAGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGACTTGT
299 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * ** * * *
10304509 TAATTCATACAATGGTCCCTTAAGCGTTCGTGTAAAGTTTCATGGCAAGATGACTCGTTTTCTA-
364 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTAT
*
10304573 ---T-----TTTTC---A-----------T---GATTTTTTAAAATTTTTTC-GAAAGAGTTTTG
429 TTTTCACGATTTTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
10304612 GCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAA
494 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
** *
10304677 ACTCTTAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATGG
559 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
10304742 CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGGT-GAGGTTTG
624 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCGAGGTTTG
* * *
10304806 ATGAGGGATAGGGGGCTAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGCACAC
688 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * * * *
10304871 CCCCCGGCCCCCTGATCGCCAGAACCCCAATGCTGTCGGTCAAGTTTTCTGGCGATGC-CC-C--
753 CCCCCGGCCCCCCGATCGAC-GGACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCACGA
* * *
10304932 --G-G---C-A--AAGAAAAATACGGCACCAGCACATGCCCGAACCCAGTAAG
817 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* *
10304976 TGCTGCCGCAACCCTCGGTCCGGTCCGACCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
10305041 CCCACGAAACGAGCGTGCAGGCGCTCAGCTGGCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGA
66 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGGGATCGG
** * ** * ** *
10305106 CCGGGTCCCCCTTTATGCACTGTCGATCCTACTGCCTCAACGTTCGGTTCGGT-TCGATCTTAGA
131 CCGGGTCCCCCTCCACGTGCTGTCGATCCTA-TGCCGCAACCCTCGGTCCGGTCT-GATCTTAGA
* * * *
10305170 CTGGGAAT-AACCTCCGTATGCCTAAGCCAACGGACGAAACGAGCGGACGGGCGGGCGGGCTCTA
194 CTGGGAATGAA-CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTA
** * * * *
10305234 CGTTGGCCAAAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
258 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
10305299 TCTTCATATCTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAG
323 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
** * * *
10305364 CCTTCGTGTGAAGTTTCATGGCAAGATCGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTG
388 CCTTCACGTGAAGTTTCATGGCAAGA-CGACTTGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * ** * *
10305429 TTCGATTCGGGATTTTTTAAAATTTTTTCAAAAGTAGTTTTGGCCCCAAACTTGGTAGGCGTGAT
452 TTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
10305494 CCTTTTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
517 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
10305559 GACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGC-GACAAACCTGTAAA
582 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-CAAACCTGTAAA
* * *
10305623 ATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAAGGGGCCAATATA
646 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * * *
10305688 AGGGTCAAGCACCAGCACCCATTGCACATCAAGGGCGCACACCCCCCGG-CCCCCTATC-ACCGG
711 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGA-CGG
* *
10305751 AACCCCAATACCGTCGGTCAGGTTCTCCGACGACGCTCCGACGATGGTGCCCCGACGAAGAAAAA
775 -ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-ACGATGGTGCCCCGACGAAGAAAAA
*
10305816 TGCGGCACCAGCACATGCCCGAGCCCAGCATG
838 TACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
10305848 TGTTGGCGTAACCCTTGGTCCGGTCCGATCTTAGACTGCGAATGAACTCTGTATGC
1 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
10305904 TTAGATTGAG
Statistics
Matches: 6038, Mismatches: 759, Indels: 692
0.81 0.10 0.09
Matches are distributed among these distances:
829 86 0.01
830 28 0.00
831 206 0.03
832 14 0.00
835 2 0.00
836 2 0.00
841 5 0.00
844 1 0.00
845 1 0.00
848 1 0.00
849 3 0.00
850 2 0.00
854 47 0.01
855 1 0.00
856 1 0.00
857 35 0.01
858 92 0.02
859 291 0.05
860 73 0.01
861 13 0.00
862 39 0.01
863 63 0.01
864 39 0.01
865 10 0.00
866 10 0.00
867 104 0.02
868 260 0.04
869 23 0.00
870 24 0.00
871 42 0.01
872 322 0.05
873 13 0.00
874 1 0.00
875 4 0.00
876 2 0.00
877 3 0.00
878 17 0.00
881 20 0.00
882 160 0.03
883 139 0.02
884 40 0.01
885 123 0.02
886 82 0.01
887 200 0.03
888 304 0.05
889 107 0.02
890 41 0.01
891 62 0.01
892 145 0.02
893 14 0.00
894 290 0.05
895 164 0.03
896 456 0.08
897 418 0.07
898 112 0.02
899 94 0.02
900 65 0.01
901 6 0.00
902 21 0.00
903 50 0.01
904 46 0.01
905 34 0.01
906 20 0.00
907 46 0.01
908 56 0.01
909 43 0.01
910 30 0.00
911 31 0.01
912 35 0.01
913 43 0.01
914 46 0.01
915 33 0.01
916 31 0.01
917 7 0.00
918 41 0.01
919 16 0.00
920 5 0.00
921 2 0.00
922 80 0.01
923 349 0.06
924 51 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (869 bp):
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCACAAGCCGGGGATCGG
CCGGGTCCCCCTCCACGTGCTGTCGATCCTATGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCGAAACTTTTTTCG
GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGACGGACCCCA
ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCACGATGGTGCCCCGACGAAGAAAAATACGGCAC
CAGCACATGCCCGAGCCCAGCATG
Found at i:10299745 original size:26 final size:26
Alignment explanation
Indices: 10299716--10299765 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10299706 CCGGTCCGAT
10299716 CTTAGACTGGGAATGAACTCCGTACA
1 CTTAGACTGGGAATGAACTCCGTACA
*
10299742 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
10299766 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACA
Found at i:10301500 original size:26 final size:26
Alignment explanation
Indices: 10301471--10301523 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10301461 TCGATCCGAT
*
10301471 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
*
10301497 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGCATG
10301523 C
1 C
10301524 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:10302386 original size:26 final size:26
Alignment explanation
Indices: 10302357--10302409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10302347 CCGATCCGAT
10302357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10302383 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10302409 C
1 C
10302410 CAAGTCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10303291 original size:26 final size:26
Alignment explanation
Indices: 10303255--10303307 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10303245 CTGATCCGAT
**
10303255 CTTAGATTGGGGGTGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
*
10303281 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
10303307 C
1 C
10303308 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:10304186 original size:25 final size:26
Alignment explanation
Indices: 10304151--10304204 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
10304141 CTGGTCCGAT
* *
10304151 CTTAGATTGGGAGT-AACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
10304176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
10304202 CTT
1 CTT
10304205 GAGTCAACAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:10307139 original size:26 final size:26
Alignment explanation
Indices: 10307103--10307154 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
10307093 TGGTCTTATT
10307103 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
10307129 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
10307155 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:10309397 original size:818 final size:823
Alignment explanation
Indices: 10307970--10309568 Score: 2263
Period size: 818 Copynumber: 1.9 Consensus size: 823
10307960 GTGCTATAGC
* * *
10307970 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGCTAACCGACGAAA
1 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* ** *
10308035 CGAGCGAGCGGGCGGGCAGGTACTACGCCGGCCAAAGAGACAGGGATGTGCAAGCTGTGGATCGT
66 CGAGCGAGCGGGCGGGC--G-ACTACGCCGGCCAAAGAGACAGGGATGCGCAAGCCATGGATCAT
* * ** *
10308100 AGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTG
128 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTG
*
10308165 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCGTTTTCTA
193 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * *
10308230 TTTTTCATGATTTTCGAAACTTTTTTGTGGTTTGGGATTTTTTTAAATTTTTTCGAATGGAGTTT
258 TTTTTCAAGATTTTCGAAACTTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGAATGGAGTTT
* ** * *
10308295 TGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAA
323 TGGCCCCAAACTTGGTAGACAAGATCCTCGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAA
*
10308360 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
388 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
10308425 GGCTACTAGCTAGCAACCTGTAAAATCTCAATGCTCTTTACGGGGGTGGTGAGTTCTCAAGGTTT
453 GGCTACTAGCTAGCAACCTCTAAAATCTCAATGCTCTTTAAGGGGGTGGTGAGTTCTCAAGGTTT
* * *
10308490 GATGAGGGATAGAGGGCCATATCAGGGCCAAGTACCAGCACCGATCGCACATCATGTGCGCACAC
518 GATGAGGGATAGAGGGCCATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACAC
* * *
10308555 CCCCCGGCCCCCCAGATCGTCGAAACCCCAATACCGTCGGTCAGGTTC-TC-CGA-C-GATGGTG
583 CCCCCGACCCCCCAGATCGTCGAAACCCAAATACCGCCGGTCAGGTTCTTCACGACCAGATGGTG
10308616 CCCCGGTGAAGAAAAAT-CTAGCACCAGCAAATG-CTCGAGCCCAGCATGTGCTACCGTAACCCT
648 CCCCGGTGAAGAAAAATAC-AGCACCAGCAAATGCCT-GAGCCCAGCATGTGCTACCGTAACCCT
* * * * *
10308679 TGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGTACTTTACAA
711 CGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTTACAA
10308744 GCCAAGGATCGGCCGGGTCCCCCTGCGTGTTGCTGATCCTACTGCCAT
776 GCCAAGGATCGGCCGGGTCCCCCTGCGTGTTGCTGATCCTACTGCCAT
* * *
10308792 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGGAA
1 AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
10308857 TGAGCGGGCGGGCGGGC-ACTACGCCGGCTAGAGAGAC-GGGATGCGCAAGCCATGGATCAATAG
66 CGAGCGAGCGGGCGGGCGACTACGCCGGCCAAAGAGACAGGGATGCGCAAGCCATGGATC-ATAG
10308920 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTA
130 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTA
* *
10308985 AATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
10309050 TTTTAAGATTTTTGAAAC-TTTTTGCGATTCGAGATTTTTTAAAATTTTTTTGGAA-GGAGTTTT
260 TTTCAAGATTTTCGAAACTTTTTTGCGATTCGAGATTTTTTAAAA-TTTTTTCGAATGGAGTTTT
* * *
10309113 GGTCCCAAACTTGGTAGACAAGATCCTCGTATTTTTATTGGTATGCAC-AAAAAATTCAGCTAAA
324 GGCCCCAAACTTGGTAGACAAGATCCTCGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAA
* * *
10309177 AACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCTATTTCATACACTTTAATG
389 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * *
10309242 GCTATTGGCT-GTAAGCCTCTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTT
454 GCTACTAGCTAGCAA-CCTCTAAAATCTC-AATGCTCTTTAAGGGGGTGGTGAGTTCTCAAGGTT
*
10309305 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCAC
517 TGATGAGGGATAGAGGGCC-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCAC
* * * **
10309370 ACCCCCCCGACTCCCCC-GATTGTCGAAATCGAAATGTCGCCGGTCAGGTTCTTCGACGATGCTC
581 A-CCCCCCGAC-CCCCCAGATCGTCGAAACCCAAATACCGCCGGTCAGGTTCTTC-ACGA----C
* * ** * *
10309434 CGATGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCCCATGCCTGAGCCTAGCATGTGCTGC
639 C-A-GATGGTGCCCCGGTGAAGAAAAATACAGCACCAGCAAATGCCTGAGCCCAGCATGTGCTAC
* *
10309499 CGTAGCCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTAGGAATGA
702 CGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
10309564 ACTTT
767 ACTTT
10309569 GCATGCCTAG
Statistics
Matches: 683, Mismatches: 74, Indels: 33
0.86 0.09 0.04
Matches are distributed among these distances:
815 3 0.00
816 129 0.19
817 148 0.22
818 202 0.30
819 7 0.01
821 3 0.00
822 74 0.11
826 1 0.00
829 113 0.17
830 3 0.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (823 bp):
AACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGAGCGGGCGGGCGACTACGCCGGCCAAAGAGACAGGGATGCGCAAGCCATGGATCATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCAAGATTTTCGAAACTTTTTTGCGATTCGAGATTTTTTAAAATTTTTTCGAATGGAGTTTTGG
CCCCAAACTTGGTAGACAAGATCCTCGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTAGCTAGCAACCTCTAAAATCTCAATGCTCTTTAAGGGGGTGGTGAGTTCTCAAGGTTTGAT
GAGGGATAGAGGGCCATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCC
CCGACCCCCCAGATCGTCGAAACCCAAATACCGCCGGTCAGGTTCTTCACGACCAGATGGTGCCC
CGGTGAAGAAAAATACAGCACCAGCAAATGCCTGAGCCCAGCATGTGCTACCGTAACCCTCGGTC
TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTTACAAGCCAA
GGATCGGCCGGGTCCCCCTGCGTGTTGCTGATCCTACTGCCAT
Found at i:10310466 original size:26 final size:26
Alignment explanation
Indices: 10310415--10310467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10310405 CTAATCCGAT
*
10310415 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10310441 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10310467 C
1 C
10310468 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10310634 original size:893 final size:890
Alignment explanation
Indices: 10308749--10329137 Score: 22023
Period size: 898 Copynumber: 22.8 Consensus size: 890
10308739 TACAAGCCAA
* * * * ** **
10308749 GGATCGGCCGGGT-CCCC-CTGCGTGTTGCTGATCCTACTGCCATAACCCTCGGTCTGGTCCAAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
10308812 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGGAATGA----GC-G-GGCGGGCG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGCG
* * *
10308871 GGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
10308936 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTC
196 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
10309001 TCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTAAGATTTTTGAA
261 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * *
10309066 ACTTTTTGCGATTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGA
326 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
** * * *
10309131 CAAGATCCTCGTATTTTTATTGGTATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
391 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * * * * *
10309195 TTTTGTGACGATTTGAAAAAAGTGTCCCTATTTCATACACTTTAATGGCTATTGGCTGTAAGCCT
456 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
10309260 CTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
521 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
10309325 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCCCGACTCCCCCGAT
586 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGAT
* ** * * **
10309390 TGTC-GAAATCGAAATGTCGCCGGTCAGGTTCTTCGACGATGCTCCGATGATGGTGCCCTGGTGA
650 CGTCGGAAA-CCCAATGCCGCCGGTCAGGTTC-TC--CGA-----C---GATGGTGCCCCGACGA
* * * * * * *
10309454 AGAAAAATACGGCACCAGCCCATGCCTGAGCCTAGCATGTGCTGCCGTAGCCCTCGGTCTGATCC
703 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
* * ** * *
10309519 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTAGGAATGAACTTTGCATGCCTAGGTCAA
768 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * **
10309584 CCCACAAAATGAGCGTGTAGGCGCTCAGTCGGCCAGAGGGGCGGGATTTGCAAGCCGG
833 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * *
10309642 GGATCGGTCGAGTCCCCCTCTGCGTGCTTCCAATCCTACTGTCGCAACCCTTGATCTGGTCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
10309707 CTTAGACTGGGATTGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGCTGGCGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GC-GGCGGG
* * * *
10309772 TGGGCACTATGCCAGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
10309837 TTAGGCAAATCTTCAT-TTCTCTATGTGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATG
194 TTAGGCACATCTTCATATT-TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
10309901 GTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTT
258 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *
10309965 GCAAACTTTTT-CTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACCTG
323 G-AAACTTTTTAC-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
10310029 GAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAGTGTA
386 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
10310094 CAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAAACACTTTAATGGCTACTGGCCGCA
451 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
10310159 AACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
516 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
10310224 GACCAATATAAGGGCCAACG-ACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCC
581 GGCCAATATAAGGGCCAA-GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * *
10310288 GCCGATCGTTGGAAACCCAATGCTGCCGGTCAGGTTCTCCGACGATGGTGCCCTGATGAAGAAAA
645 -CCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAA
* ** ** * *** **
10310353 ATACGGTGCCAGCACATGGTCAAGCCCAGCATGTGCTGCCGCAAGGATCGGTCTAATCCGATCTT
709 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
**
10310418 AGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
774 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * ** *
10310483 AAAAGAGCGTGCGGGCGCTCAACCATCCAGAGGGGCGGGATGCGCAAGCCAG
839 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * **
10310535 GGATCGGTCGGGTCCCCCTTTACGTGCTGCCGATCTTGCTGCCGCAACCCTCGGTCTAGTCCAAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
10310600 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGATGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGG-CGGG
* * * * * * *
10310665 CGGGCCCTACGTCGGTCAGAGTGGCGGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGAGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
10310730 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
10310795 TCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * * *
10310860 AAACATTTTGCAGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCGAACTTGATA
324 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
10310925 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
389 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
10310990 GATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTTGCAGCAAAC
454 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
10311055 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
519 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * **
10311120 CAATAGAAGGCCCAAGTGCCAGCACCCATCACACATCATGTGCGCACACCCCCCCAACCCCCCCG
584 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCG
* * * ** * *
10311185 ATCGTCGGAACCCCAATGCCGCTGGTCAAGTTCTCTGGCGATGCTCCGACGATACTGCCCTGATG
648 ATCGTCGGAAACCCAATGCCGCCGGTC-A--------G-G-TTCTCCGACGATGGTGCCCCGACG
** * *
10311250 AAGAAAAATGCGGCGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCG
702 AAGAAAAAT---GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * * *
10311315 GTCTGATCTTAGACTGGGAATGAACTCTGGATGCTTAGACTGGGAATGAACTTCGTAGGCCTAAG
764 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
10311380 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCGGGATTCGCAAGCCGA
829 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * **
10311442 GGATCGG-CTGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCAG-AACCCTCGGTCCAGT-TC
1 GGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC-GCAACCCTCGGTCTGGTCT-
* * *
10311504 GATCTTAGACTGGGAATGAACTCCGTATG-CTAAGCCAACCGACGAAATGAACGGGC-G-GGCAG
63 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGG
* * * * *
10311566 GCGGGCACTATGCCGACTAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
128 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
10311631 TTTAGGCACATCTTCATATTTCTGCATGCGAATGCCATTTTT-TGGCTTGTAAATTCATACAATG
193 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
10311695 GTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACGAGTTTT
258 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
10311760 GAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTT-GAAAGGATTTTTGGCCCCAAAGTTGG
323 GAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
10311824 TAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGTTAAAAACTCGAGGGGTAC
387 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
10311889 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
452 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * * * *
10311954 ACCTGTAAAATCTCAAATTCTCTTTAACGGGGTATGAGATCTCTAGGTTTGATGAGCGATAGGAG
517 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
10312019 ACCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGTTCCCC
582 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCC
* * * * *
10312083 CGATCGCCGGAACCCCAGTGCCGCCGGTCAAGTTCTCCGGTAATGCTCCGACGATGGTGCCCGGG
646 CGATCGTCGGAAACCCAATGCCGCCGGTC-A-------GGT--T-CTCCGACGATGGTGCCCCGA
* * *** * **
10312148 CGAAGAAAAATGTGGTACCAGCACATGCCCGAGCCCAGCATGTAAAGCCGCAACCTTCGGTCCAG
700 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
*
10312213 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
765 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
10312278 CAACCCATGAAATGAGCGTACGGGTGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCGG
830 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * ** * **
10312339 GGATCGGTTGGGTCTCCCTCTACGTGCT-CTCAATCTTGCTATCACAACCCTCGGTCTGGTCCAA
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGC-CGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGA
* * * * *
10312403 TCTTAGATTGGGAATGAACTCCGTAATG-CTAAGCC-ACTGACG-AACGAGCAGAC-G-GGCGTG
65 TCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGG
*
10312463 CGGGCACT--G-CGGCCAGCA-AG-CGGGATGCGCAAG-CGTGGATCGATAGGGTGGTTGG-GTG
129 CGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG-G
* *
10312521 GTTTAGGCACATCTTCATATTTCTACGTGCCAATTGACATCTTTTATGGGTTGGT-AATTCATAC
192 GTTTAGGCACATCTTCATATTTCTACGTGCCAA-TGCCAT-TTTTATGGCTT-GTAAATTCATAC
*
10312585 AATTGTCCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGGACGACTCGTTTTTCTA-TTTTCATG
254 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCG-TTTTCTATTTTTCATG
* * * *
10312648 ATTTTCGAAACTTTTTACGGTGT-GAGATTTTTTAAAAATTTTTCAGAAGGATTTTTGGCCCC-A
317 ATTTTTGAAACTTTTTACGGT-TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * *
10312711 ACTTCGTAGACGTGATCCTTGAATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
381 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
10312776 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGA
446 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
10312841 CAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
511 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
10312906 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGA
576 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * *
10312971 CCCCCCGATCATTGG-AACACCAATGCCGCCGTTCAGGTTCTCCGATGATGCCCCGACAATGGTA
641 CCCCCCGATCGTCGGAAAC-CCAATGCCGCCGGTCAGGTTCTCC---GA-----CG---ATGGTG
* * * *
10313035 CCCCGACGAAGAAAAATGCGGCACTAGCACATGGCCGAGCCCAGCATGTGCTGTCGCAACCCTCA
694 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * * * *
10313100 GTCCGATCCAAACTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAAGTCCGTATGC
759 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
10313165 CTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGTCCAGAGGGGCAGGATGCGCAAGCC
824 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
10313230 GG
889 GG
* * * *
10313232 GGATCGGTCGGGTCCCCCTCTTCGTGCTACCGATCCTGCTGCCACAACCCTCAGT-TCGGTCTGA
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGA
* * * * ***
10313296 TCTTAGACTGGGAATGAACTCTGCATG-CT--GCCAATCCTG-CTG--TCGTAACCCTCGGTC--
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CC-GAC-GAAACG-AGCGGGCGG-CGG
* * * * * * * *
10313353 CGGTC-TG-ATCTTA-GACTTGG--A-ATGA-ACTTCGTATGC-CTAAGCCAACCGACGAAACGA
125 CGGGCGGGCA-C-TACG-C-CGGCCAGA-GAGAC--GGGATGCGC-AAG----CCG-TGGATCGA
** * ** * ** * ** * ** *
10313410 GCGGGCGGGCCGGCGGGCACTACGC-CGGC--CAGA-GAC-ACGGGATGCGCAA-GCCGTGGATC
177 TAGGG-TGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTAC--G-TGC-CAATGCC----ATT
** * * *
10313469 GATAGGGTGGTCGTTGGGTTTAGGCACATCTTCATATTTCTAT-GTGCC--AATGCCATTTTTAT
232 TTTA---TGG-C-TT--G--TA---A-A--TTCATA---CAATGGTCCCTTAA-GCC---TTCA-
* * * * ** *
10313531 GGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTAT
274 --C--GTGAAGT--T-TCATGG---C--AAGACGACTCGT----TTTC-----------------
* ** * * * *
10313596 TTTTTATTTTTCAGGATTTTCAAAACTTTTTACAGTTCGAGATTTTTAAAAATTTTTTCAGAAAG
306 ----TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
** * * *
10313661 AGTTTTTTCCCCAAACTTGGTAGACGTGATCCCTATATTTTTGTTGGCATGCACAAAATAATTCA
367 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
10313726 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGCGTCCCCATTTCAGACACC
432 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
10313791 TTAATGCCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
497 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * * *
10313856 GATTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCATCGTACATCATGTGT
562 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
10313921 GCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATG
627 GCACACCCCCCCGG-CCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTC---CGA--
** *
10313985 CTCCGGTGATGGTGCCCCGGTGAAGAAAAATGC-ACACCAGCACATGCCCGAGCCCAGCATGTGC
686 ---C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * ** * * * * * * *
10314049 AGTCAAAAGCCTCGGTCTAGTTCGATCTTTGACTGGGAATCAATTTCGTATGCTTAGACTGGGAA
745 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
** ** *
10314114 TGAACTCCGTATGCCTAAGTCAACCCACG-AACGAGCGTGCAAGCGCTCAGCCAACCAGAGGGAC
810 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* *
10314178 GGGATGCGCAAACCAG
875 GGGATGCGCAAGCCGG
** * * * * ** * * *
10314194 GGATCGACCGGGTCTCCCTTTGCGTGCTGCCGATCCTACTACCATAACCCTCGGTCCGATCCGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * *
10314259 CTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGATGAAATGA----GC-G-GGCAGACG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGCG
* * *
10314318 GG----ACGCCGTCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
10314379 TGGCACATCTTCATATTTCTACGTGCCAAGGACATTTTTATGGCTTGTAAATTCATACAATGGTC
196 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
10314444 CCTTAAGACTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
261 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* *
10314509 ACTTTTT---G--C--GA--TTTTAGAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGA
326 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
10314564 CGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
391 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
10314629 TTTTGTGACCA-TT--------TG----------AGACACTTTAATGGCTACTGGCAGCAAACCT
456 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
10314675 ATAAAAGCTCAAATGCTCTTTAA-GGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
521 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
10314739 ATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTACGCACA-CCCCCTGGCCCCACGATC
586 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
** * * * *** * *
10314803 G-CTGG-AACCCAATGCCGCTAGTCAGGTTCTCCGGCGA---TGCTCCGACGATG--GTGTCCCG
651 GTC-GGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * * **
10314861 -ACGAAGAAAAATG--CG-GCACCAGC---T-AT---G---CCCTCGATCCAGTCCGA-CTTAGA
715 CAC-CAG-CACATGCCCGAGC-CCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
*** * ** * * * **
10314911 CTGGGAATGAACTCTACATGCCTAAGTCAACCCAT-AAAATGAGCGTGCG--GGCTCTAAG-CCG
777 CTGGGAATGAACTCCGTATG-CTTAG---A--C-TGGGAATGAAC-TCCGTATGC-CTAAGTCAA
* * * * *
10314972 GCCA-G--A-G-G-G-GCGGGATC-CTTAAGCCGG--GGATCGGTCGGG-T-C-C---CC--
833 CCCACGAAACGAGCGTGCGGG--CGC-TCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGG
* * * * ** * * * * ** *
10315016 --CTCTG-CGTGCTTCCGATCT---TGCTGCCGCAACCTTCAGTCTG-GTCCGAT--G--T--T-
1 GGATCGGTCG-GGTCCCCCTCTGCGTGCTGCCG-ATCCTGCTG-CCGCAACC-CTCGGTCTGGTC
* *
10315067 AGA---T-G---GGGAATGAACTCCGTATGCCTAAGCCCACCGACGAAACGA----------GCG
62 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCG
** * *
10315115 GGCGGGCACTACATCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGG
127 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
10315180 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTTTAAATTCAAACAAT
192 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
10315245 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTT
257 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * *
10315310 TGAAACTTTTTACGATTCGGGATTTTTTTAAATTTTTTCGGAACGAG-TTTGACCCCAAACTTGG
322 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
10315374 TAGACGTGATCCTGGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTTGAAGTCTTC
387 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
10315438 AAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
452 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
10315503 ACCTGTAAAATCTCAAATGCTTTTTAA-GGGTTGTGAGTTCTCGAGGTTTGATGAGGGGTAGGGG
517 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* ** ** * *
10315567 GCCAAATATAAGCGCCAAGTAATAGCACCCATTACACATCATGTGCACACACCCCTCCCCTCGAC
582 GCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC-CCCC-CGGC
* *
10315632 CCCCTCGATTGTCGG-AACCCAAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATAGTG
642 CCCC-CGATCGTCGGAAACCC-AATGCCGCCGGTCA--------GGT--T-CTCCGACGATGGTG
* * * *
10315696 CCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCCTGTGCTGCCACAACCCTCG
694 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* **
10315761 GTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
759 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * * * * *
10315826 CTTAGTCAAGCCATGAAACGAATGTACGGGCGCTCAACTGGCTAAAGGGGCGGGATGCGCAAGCC
824 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
*
10315891 AG
889 GG
* * ** * * * *
10315893 GGATCGATCGGGTCCCCATCCACGTGCTGGCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* ** *
10315958 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAAAACGGGCGTGCGGGCGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GC-GGCGGG
* * *
10316023 CAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-AGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *** *
10316087 TTAGGCACATCTTCAAATTTCTACGTAAAAATGCCATTTTTGTGGCTTGTAAATTCATACAATGG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
10316152 TCCCTTAAGCTTTGACGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCATGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** * * *
10316217 AAACTTTTTGTGGTTC-AGCATTTTTTAAAATTTTTTCGAAACGAGTTTTGGACCCAAACTTGGT
324 AAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
10316281 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCCAGCTGAAAACTCGTAGTGTAC
388 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT-CAGCTAAAAACTCGAAGTGTAC
*
10316346 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
452 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
10316411 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
517 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** * * *
10316476 GTAAATATAGGGGCCAAGTACAAGCACCCATTGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
582 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCC
* * * * *
10316540 CGATCGTCAG-AACCACAAAGTCGTCAGTCAGGTTCTCCAGCAATGCTCTGGTGATGGTGCCCCG
646 CGATCGTCGGAAACC-CAATGCCGCCGGTCAGGTTCTCC-G--A----C----GATGGTGCCCCG
* * * *
10316604 ACGAAGAAAAATACGGCACCAGCACTTGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTG
699 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G
10316669 CCTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
759 ---G----T---CT-GG--T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
10316734 TGGGAATGAACTCCGTATGCCAAAGTCAACCAATGAAACGAACGTGCGGGCGCTCAGACGGCCAG
804 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *
10316799 AGAGGCGAGATGCGCAAGCCAG
869 AGGGGCGGGATGCGCAAGCCGG
* * * * * * *
10316821 GGATCGGCCGGGTCACCCTCTGTGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCTGGT-TCGA
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GA
*
10316885 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGACG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGC-GG-CG
* * * *
10316950 GGCGGGCACCACGGCGGCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGG
127 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
10317015 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAAT
192 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
10317080 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTATTCACGATTTT
257 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
10317145 TGAAACTTTTTACGGTTCGGGATTTTTTTTAAATATTTTT-GGAAGGTGTTTT-GCCCCAAACTT
322 TGAAACTTTTTACGGTTCGAGA-TTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * * *
10317208 GGCATACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTTAGCT-AAAACTCGAAGTGT
385 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
10317272 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
450 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
10317337 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
515 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
10317402 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCCCGGCCCC
580 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* *
10317465 CCTGACCGTCGGAAACCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCC
645 CC-GATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCT-C--CGA-----C---GATGGTGCCCC
* * *
10317530 AACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCCTCGGT-T
698 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* *
10317594 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTA
763 -GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
10317659 ACTCAACCCACGAAACGAACGTGCGAGCGCTCAGCTGGCCAGAGAGGCGGGATGCGCAAGCCGG
827 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * *
10317723 GGATCGGTCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCTGGT-TCGA
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GA
* * * * * *
10317787 TGTTAGACTAGTAATGAACTCCGTATGCCTAAGCCAACAGACGAAACCAGCGGAC-G-GGCGGGC
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGC
* * * *
10317850 AGGCACCACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
130 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
10317915 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
195 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
10317980 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACCCGTTTTGTATTTTTCATGATTTCTGA
260 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * * * *** * * *
10318045 AACTTTTTGCGGTTTGGGATATTTTAAAA-TTTTTAAAAAGGATTTTTGGCTCCAAAGTTGGTAG
325 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
10318109 ATGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAG
390 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
10318174 ATTTTGTGA-CA-TTG-AAAAAGTGTCCACATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
455 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
10318236 TGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAATGAGGGATAGGGG
520 TGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG--ATGAGGGATAGGGG
* * * * *
10318301 GGCAATATAAGGG-CAAGTACCAGTACCCCATCGCACATCATGTGCGCACTCCCCCCTGCCCCCC
582 GCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * *
10318365 CGACCGTC-GAAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG-CCCT
646 CGATCGTCGGAAA-CCCAATGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCG
* * * *
10318428 AGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCC
699 A-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
** * *
10318493 AATCCGATCTTAGTCTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAA
763 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
10318558 GTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGG
828 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* *
10318621 GGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGT-TCGGTCTGA
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCTGA
* *
10318685 TCTTAGACTGGGAATGAAC-CCAGTATGCCTAAGCAAACCGACGAAACGAGCGGAC-G-GGCGGG
65 TCTTAGACTGGGAATGAACTCC-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGG
* * *
10318747 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGGCGTGGATCGATAGGGTGGTAGGTGGGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
10318812 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATCG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
10318877 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * *
10318941 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGACTTTCGGTCCCAAACTTTGT
324 -AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
10319006 AAACTTGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
388 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
10319071 AGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAA
453 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
10319136 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
518 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
10319200 CACAATATAAGGGCCAAGTACCAGCACCCATCGCACCTCATGTGCACACGCCACCCCTGCCCCCC
583 C-CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
** *
10319265 GATCGTC-GAAACCCCAATGCCGTAGGTCAGGTTCTCCGACGATGGTTCCCCGACGAAGAAAAAT
647 GATCGTCGGAAA-CCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * *
10319329 ACGGCACCAGCACATGCCCGAGCTCAGCATTTGCTGCCGTAACCCTCGGTCTGGTCCAATCTTAG
711 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
*
10319394 ACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
776 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
10319459 ATGAGCGTGCAGGCGCTTAGTCGGCCAGAAGGGCGGGATGCGCAAGCCAG
841 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * *
10319509 GGATCGGTCGAGTCCCCCTCTGCATGCTGCCAATCCTACTACC-AAACCCTCGGTCTGGTCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * *
10319573 CTTAGATTGGGAATGAACTCCATACGCCTAAGCCAACCGACGAAATGAGCGGAC-G-GGCGGGTG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGCG
* * * *
10319636 GGTACTACGCTGGCCAGAGAGACGAGAT-CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
10319700 AGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
196 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
10319765 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTGTATTTTTCATGATTTTCGAA
261 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * *
10319830 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
326 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
10319895 TGTGATCCTTGTATTTTT-TTGGCATTCATAAAAAAATTCAGTTAAAAACTCAAAGTGTACAAGA
391 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
10319959 TTTTGCGATCATTTGAAAAAAGT-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
456 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
10320023 GTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCA
521 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** *
10320088 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTACACACCCCCTCGGCCCCCCAGAT
586 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GAT
* * * * *
10320153 CGTC-GAAACCCCAATACCTCCGATCAGGTTCTCTGGCGATGCTCCGGCGATGGTGGCCCGATGA
650 CGTCGGAAA-CCCAATGCCGCCGGTCAGGTTCTC---CGA--------CGATGGTGCCCCGACGA
* * *
10320217 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAA-CC-C--TC--G---
703 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
*
10320273 G---TT---C---G---G---TCCG-ATG-TTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
768 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
10320321 CCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCACAAACCGG
833 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** ** * * *
10320379 GGATCGATTGGGTCCCCCTCTGCGTGTTGTCGATCCAACTATCGCAACCCTCAGTCCGATCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * *
10320444 TTTAAAGTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGGAACGA----GC-G-GGCGGGCA
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGCG
* * *
10320503 GGCACTACGTCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
10320568 AGGCACATCTTCATATTTCT-GGATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGT
196 AGGCACATCTTCATATTTCTACG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
10320632 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCCATTTTTCACGATTTTTGA
260 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* ** * *
10320697 AAGTTTTTGTGGTTCGAGATTTTTTAACATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAG
325 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
10320762 ACCTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAAA-TTGAAGTGTATAA
390 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA-AAACTCGAAGTGTACAA
* * *
10320826 GATTTTGTGACCATTTGAAAAAAGTTTCTCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
454 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
10320891 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGC
519 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
10320955 CAATATAAGGGCCAATTACCAGCACCCATCGCACATCACGTGCGCACA-CCCCCCGGCTCCCCCG
584 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCG
* * ** *
10321019 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCACGATGCTGCCCTAGCGA
648 ATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATG------G-TGC--CCCGA-CGA
* ** * * * *
10321084 AGAAAATTATGGCACCAGCGCATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTTC
703 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
* * *
10321149 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCTGCATGCCTAAGTCAA
768 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
10321214 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAAGGGTGGGATGCGCAAGCCGG
833 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** * * * * * * **
10321272 GGATCGACCAGGTCCCTCTCTCCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * *
10321337 CTTAGACAGGGAATGAACTTCATACGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGACGAG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGG-CGGG
* *
10321402 CGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAA-CCGTGGATCGATAGGGTGGTAGGTGGGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
10321466 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
10321531 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
10321596 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAA-GAGTTTT-G-CCCAAACTTCGTA
324 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
10321657 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGGGTACAA
389 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
10321722 GATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG-AGCAAAA
454 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAA
*
10321786 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
518 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
**
10321850 CCAATATAAGGGCTGAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCACCCGGCCCCC
583 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCCGG-CCCC
* * * * * * *
10321915 CCGATCGCCAGAATCCCAATGCCGTCAGTCAAGTTTTCCGGCGATGCTCCGGTGATGGTG-CCCG
645 CCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCT-C--CGA-----C---GATGGTGCCCCG
* * * * *
10321979 ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGATCCG
699 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * * *
10322044 GTCTGATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTAGGCCTAAG
764 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
10322108 TCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGTCGAGAT-CTGCAAGCCGG
829 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCCGG
* * ** * * * * * * * * *
10322170 GGATCGGTTGGGTCCCCCTATGTATGCTGTCGATCCTGTTGCTGCCACCTTCAGTCCGATCCGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
10322235 CTTAGACTGGGAATGAACTCCATATGCCCAAGCCAACAGACGAAAGGAGCGGGCCGGCGGACGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGCGG-CGGG
* * *
10322300 TGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
10322365 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTACATTCATACAATGT
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
10322430 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * **
10322495 AAACTTTTTACTGTTTGGGATTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
324 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
10322560 GACGTGATCCTTATATATTTT-TTGGCATGCACAAAAAAATTTAGCTAAAAAATCAAAGTGTACA
389 GACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
10322624 AGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAA
453 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
10322689 CTTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTC-ACGGTTTGATGAGGGATAGGGG
518 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGG
* * * *
10322753 GCCAAGATAAGGGCTAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCCAGCCCCCC
582 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* ** *
10322818 GATCGTCGGAACCCCAATGTTGTTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGA
647 GATCGTCGGAAACCCAATGCCG-CCGGTCAGG-----T-----T-CTCCGACGATGGTGCCCCGA
* * * * * *
10322883 TGAAGAAAAATGCGGCACCAGCGCATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTTGGTCTGA
700 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * *
10322948 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTTCGTATGCCTAAGT
765 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
10323013 CAACCCATGAAATGAGTGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATTCGCAAGCCGG
830 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * *
10323074 GGATCGGTCGGGTCCCCCTCTGCATGCTACCCATCCTGCTGCCACAACCCTCAGTCTGGTCTAAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * *
10323139 CTTGGACT-GGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCGGGCGGGCGAACAGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCG-GCGGG
* * *
10323203 CGGGCACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGC
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
10323268 TTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
10323333 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * **
10323398 AAACTTTTTACAGTTTGAAATTTTTTAAACTTTTTTTGGAAGGAGTTTTATCCCCAAACTTGGTA
324 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * **
10323463 TACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAATTAAAAACTCGAAGTGTACAA
389 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
10323528 GATTTTGTTATCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
454 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
10323593 CTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGC
519 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * ** *
10323658 CAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGTGCACACCCCTTGTCGGCTCCCT
584 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC--CCCGGC-CCCC
* * * * * * * *
10323723 CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTTTTCAACGA---CGCTCCGACGAAGAAAAAA
646 CGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * *
10323785 ACGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCCGTAA-CC-C--TC-AGTCCGGTC----
711 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
*
10323841 -C-------G-A---C--A---TTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAA
776 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
10323889 ACGAGCGTGCAGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGCTGG
841 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* *** * * * * * * **
10323939 GGATCAGTCACATCCCCCTCTACGTGCTGTCGATCCTACTTCCGCAACCCTCAGTCCGGTCCAAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
10324004 CTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACTGACAAAACGTATGCATAAGCCAACTGA
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GC----G------G-
* * * * *
10324069 CAAAACGAGTAGGCGGGCGGCCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATGGA
118 ----GCG-G-CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
10324134 TA-GG-GGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTT
177 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
* * *
10324197 GTAAATTCATACAATGGTCCTTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTTGTTTTCT
242 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
10324262 ATTTTTCATGATTTTCGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTT
307 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * **
10324327 TAGCCCCAAACTTGGTAGACATGATCGTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAATTAA
372 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* *
10324391 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAAT
437 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
10324456 GGCTACTGGTAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTGTTGAGGTTT
502 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* ** *
10324521 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCTTACATCATATGCGCACA
567 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * *
10324586 CCCCTCCGGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGTCGATGCTCCAA
632 CCCCCCCGGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTC---C---G-----A
* * * * * *
10324651 CGATGGTGCCCCGACGAAGAAAAATGTGACACCAACACATGCCCGAGCCCTGCATGTTCTGCCAC
686 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *** * *
10324716 AACCCTTGGTCCAATCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT
751 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
10324781 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAAGGGCGGGATG
816 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* *
10324846 CGTACGCC-G
881 CGCAAGCCGG
* * * * * * ** * *
10324855 GGATCCGTCGGGTCCCCGTCTGTGTGCTGTCGATCCTGCTACCGTAACCCTCAATCCGATCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * *
10324920 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGC--C--GCT
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGCG
* *
10324981 GACACT--GCCGGCCCAGAAAGACGGGATGCGCAAGCCGGTGGAATCGATA-GGTGGTAGGTGGG
131 GGCACTACGCCGG-CCAGAGAGACGGGATGCGCAAGCC-GTGG-ATCGATAGGGTGGTAGGTGGG
10325043 TTTAGGGCACATTCTTCATATTT-T-CGGGTGCCAATGGCCATTTTTATGGCTTGTAAA-TCATA
193 TTTA-GGCACA-TCTTCATATTTCTAC--GTGCCAAT-GCCATTTTTATGGCTTGTAAATTCATA
*
10325105 CAATGG-CGCC-TAAGCCTTCACGAGGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
253 CAATGGTC-CCTTAAGCCTTCAC---GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-
* *
10325168 CATGGATTTTTTTCCAAAACTTTTTACGGGTTCGAGATTTTTTAAAAATTTTTTCGG-AGGATTT
313 CAT-GA--TTTTT--GAAACTTTTTAC-GGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTT
* * * *
10325232 TTGGACCC-AACATGGTGGACGTGATCCTTGTA-TTTTG-TAGCATGCA-AAAAAAATTCAGCT-
371 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
10325292 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCA-ACACTTTAA
436 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
10325355 TGGCTAC-GGCAGC-AACCTGTAAAATCTC-AATGCTCTTTTAAGGGGGTGTGAGTTCTC-AGGT
501 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
10325416 TTGCATGAGGGATA-GGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACATCATGCGCGC
565 TTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
10325480 ACACCCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGTCGATGCT
629 ACACCCCCC-CGGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTC-TC--CGA----
* ** * * * * *
10325545 CCGGCGATGGTGTCCCGGTGAAGAAAAAAGTGACACCAGCACATGCCTGAGCCCAGCATGTGTTG
686 ----CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
10325610 CCGCAACACTCGGTCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATT
747 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
10325675 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCTGCCCAGCCGACGAGAGGGGCG
812 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCG
* *
10325739 AGATGCGCAAGTCGG
876 GGATGCGCAAGCCGG
* * ** * * * * *
10325754 GGATCGGCCGGGT-CCCCTCTACGTGCTATCGATCCTACT-AC-TAACCCTTGGTCTGGTCCGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
10325816 CTTGGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--A------TG-GGCGGGCG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGCG
* * *
10325871 GGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGCTCGATAGGGTGGTAGGTGGGTTT
131 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
10325936 AGACACATCTTCATATCTCTATGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTC
196 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
10326001 CCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTCTTGAA
261 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
** * * *
10326066 ACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCTCCAAACTTGGTAGA
326 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
10326131 CATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCAAAGTGTACAAGA
391 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
10326196 TTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTATTGGCTACTGCCAGCAAACCT
456 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* ** *
10326261 GTAAAATCTCAATTGCTCAGTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
521 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
10326326 ATATAAGGGCCAAGTACCACCACCCATCGCACGTCATGTGCGCACACCCCCCCGACCCCCCGATC
586 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
* * * * * *
10326391 ATCGG-AACTTCAATGCTGCCAATTAGGTTCTCCGGTGATGCTCCGACGATGGTGACCCGACTAA
651 GTCGGAAAC-CCAATGCCGCC-----GG---TCAGGT--T-CTCCGACGATGGTGCCCCGACGAA
* * * * * *
10326455 GAAAAATGTGGCACCAGTACATGCCCGAGCCCAGCATGGGCTACCGCAACCCTCGATCCGGTCCG
704 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
* * *
10326520 ATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTATGTCAAT
769 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * **
10326584 GCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCTAG
834 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** ** * * * **
10326641 CGATCGACCGGGTCCCCCTCTGCGTTTTGCCAATCCTGTTGCCGTAACCCTCGGTCCAGTCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* ** *
10326706 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGGTGAAACGAGCTGGCTGGCGGGCGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGC-GGCGGG
* * * * * *
10326771 CGGGCACGACGTCAGCCAGAGAGACGGGATGCGCTAGTCGTGGATCGATTGGGTGGTAGGTGGGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
10326836 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
10326901 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
10326966 AAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTA
324 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
10327031 GACATGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AATGTGTACA
389 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACA
*
10327095 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
453 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
10327160 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
518 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
10327225 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCACACCCCCCCGCCCCCCCG
583 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * *
10327290 ATCATCGG-AACCTCAATGCCGCCGATTCAGGTTTTCCGGTGATGCTCCGACGATGGTGACCCGA
648 ATCGTCGGAAACC-CAATGCCG-C----C-GG---TCAGGT--T-CTCCGACGATGGTGCCCCGA
* * * * *
10327354 CTAAGAAAAATGTGGCACCAGTACATGCCCGAGCCCAGCATCGTGGCTTACCGCAAACCCTCTGA
700 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT-GT-GC-TGCCGC-AACCCTC-GG
* * *
10327419 TCCGGTCTGA-CTTA-ACCTGGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCTGTATG
760 TCTGGTCCGATCTTAGA-CT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
10327481 CCTATGTCAATGCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGC
823 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
**
10327546 TAG
888 CGG
* ** ** * * * **
10327549 CGATCGACCGGGTCCCCCTCTGCGTTTTGCCAATCCTGTTGCCGTAACCCTCGGTCCAGTCTGAT
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* ** *
10327614 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGGTGAAACGAGCTGGCTGGCGGGCGGG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGC-GGCGGG
* * * * * *
10327679 CGGGCACGACGTCAGCCAGAGAGACGGGATGCGCTAGTCGTGGATCGATTGGGTGGTAGGTGGGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
10327744 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
10327809 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
10327874 AAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTA
324 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
10327939 GACATGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AATGTGTACA
389 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACA
*
10328003 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAA
453 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
10328068 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
518 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
10328133 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
583 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
* *
10328197 GATCGTCGGAAACCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
647 GATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGAC
* * * * *
10328262 GAA-AAAAATGTGGCACCACCACATGCCTGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCTGGT
701 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
10328326 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
766 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * ** * * * *
10328391 AACCCACGAATCGAGTGTATGGGCGCTCAACCGACCAGAGGGGCGGGTTGCACAAGCCGG
831 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * ** * * * * *
10328451 GGATCGGTCGGGTCTCCCTCTACGTGCTGTTGATCCTACTGCTGCAACGCTTCGTTC-GGTTTGA
1 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAC-CCTCGGTCTGGTCTGA
* * *
10328515 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGGACAGGCGGC---
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGCGGG
* * * * *
10328577 CGGGCTCTACGTCGGCCAGAGAGACGAGATCCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGT
129 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
10328642 TTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCTTACAATGG
194 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
10328707 TCTCTTAAACCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTG
259 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** ** * * *
10328772 AAACTTTTTGA-TATTCGAGATTTTTTAAAATTTTTTCAAAAGGCGTTTTGGCCCCCAACTTGGA
324 AAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
10328836 AGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAGAAACTGGAAGTGTACA
388 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
10328901 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
453 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
10328966 CTTGTAGAACCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
518 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
10329031 CCAATCTAAGGGCCAAGTAGCAGCTCCCATC-CACATCATGTGCGCACA--CCCCCGGCCCCCTG
583 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * * *
10329093 ATCGTCAGAATCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGGT
648 ATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGGT
10329138 CCGTCGATGG
Statistics
Matches: 16714, Mismatches: 2031, Indels: 1511
0.83 0.10 0.07
Matches are distributed among these distances:
801 7 0.00
805 213 0.01
808 1 0.00
809 1 0.00
810 1 0.00
812 4 0.00
813 44 0.00
814 62 0.00
815 6 0.00
817 9 0.00
818 7 0.00
819 4 0.00
820 7 0.00
822 1 0.00
824 2 0.00
827 1 0.00
828 1 0.00
829 6 0.00
830 27 0.00
831 24 0.00
832 89 0.01
833 41 0.00
834 2 0.00
835 6 0.00
836 13 0.00
837 8 0.00
838 6 0.00
839 12 0.00
840 15 0.00
841 11 0.00
842 2 0.00
843 13 0.00
846 2 0.00
848 3 0.00
849 1 0.00
850 1 0.00
851 8 0.00
854 13 0.00
855 4 0.00
856 5 0.00
857 36 0.00
858 14 0.00
859 85 0.01
860 49 0.00
861 5 0.00
862 11 0.00
863 8 0.00
864 4 0.00
865 140 0.01
866 39 0.00
867 97 0.01
868 294 0.02
869 154 0.01
870 191 0.01
871 63 0.00
872 6 0.00
873 2 0.00
874 1 0.00
875 3 0.00
876 1 0.00
877 34 0.00
878 20 0.00
879 133 0.01
880 243 0.01
881 233 0.01
882 30 0.00
883 65 0.00
884 197 0.01
885 126 0.01
886 279 0.02
887 225 0.01
888 442 0.03
889 122 0.01
890 94 0.01
891 187 0.01
892 74 0.00
893 1491 0.09
894 238 0.01
895 216 0.01
896 452 0.03
897 683 0.04
898 1527 0.09
899 554 0.03
900 291 0.02
901 516 0.03
902 1126 0.07
903 1236 0.07
904 504 0.03
905 221 0.01
906 235 0.01
907 293 0.02
908 928 0.06
909 47 0.00
910 12 0.00
911 5 0.00
912 5 0.00
913 1 0.00
914 12 0.00
915 3 0.00
916 94 0.01
917 81 0.00
918 2 0.00
919 9 0.00
920 1 0.00
921 9 0.00
922 8 0.00
923 6 0.00
924 4 0.00
925 4 0.00
926 9 0.00
927 99 0.01
928 411 0.02
929 70 0.00
930 192 0.01
931 28 0.00
932 5 0.00
933 2 0.00
934 6 0.00
937 4 0.00
938 5 0.00
939 3 0.00
941 6 0.00
942 1 0.00
943 3 0.00
946 4 0.00
948 3 0.00
949 12 0.00
950 12 0.00
951 7 0.00
952 1 0.00
953 2 0.00
954 1 0.00
955 10 0.00
956 5 0.00
957 3 0.00
959 4 0.00
960 2 0.00
962 119 0.01
963 175 0.01
964 296 0.02
965 8 0.00
967 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
GTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
Found at i:10312248 original size:26 final size:26
Alignment explanation
Indices: 10312219--10312271 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10312209 CCAGTCCGAT
10312219 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10312245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10312271 C
1 C
10312272 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10313148 original size:26 final size:26
Alignment explanation
Indices: 10313112--10313164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10313102 CCGATCCAAA
*
10313112 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10313138 CTTAGATTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10313164 C
1 C
10313165 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10315802 original size:26 final size:27
Alignment explanation
Indices: 10315773--10315830 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 27
10315763 CCGGTTTGAT
10315773 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
10315799 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
10315826 CTTAG
1 CTTAG
10315831 TCAAGCCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.84
27 5 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:10315841 original size:27 final size:26
Alignment explanation
Indices: 10315784--10315842 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
10315774 TTAGACTGGG
** *
10315784 AATGAACTCCGTATGCTTAGACTGGG
1 AATGAACTCCGTATGCTTAGACAAGC
*
10315810 AATGAACTCCGTATGCCTTAGTCAAGC
1 AATGAACTCCGTATG-CTTAGACAAGC
*
10315837 CATGAA
1 AATGAA
10315843 ACGAATGTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACAAGC
Found at i:10316711 original size:26 final size:26
Alignment explanation
Indices: 10316675--10316753 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
10316665 TCTGCCTGAT
* *
10316675 CTTACACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10316701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10316727 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10316753 C
1 C
10316754 CAAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10317632 original size:26 final size:26
Alignment explanation
Indices: 10317603--10317655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10317593 TCGATCCGAT
*
10317603 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
10317629 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
10317655 C
1 C
10317656 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:10319429 original size:26 final size:26
Alignment explanation
Indices: 10319389--10319441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10319379 CTGGTCCAAT
10319389 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
10319415 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
10319441 C
1 C
10319442 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:10321204 original size:26 final size:26
Alignment explanation
Indices: 10321152--10321204 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10321142 CTGGTTCGAT
* *
10321152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGCATG
*
10321178 CTTAGACTGGAAATGAACTCTGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
10321204 C
1 C
10321205 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:10322991 original size:26 final size:26
Alignment explanation
Indices: 10322954--10323006 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10322944 CTGATCTGAT
*
10322954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
10322980 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
10323006 C
1 C
10323007 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:10324058 original size:25 final size:25
Alignment explanation
Indices: 10324024--10324075 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
10324014 GAATGAACTT
10324024 CGTATGCATAAGCCAACTGACAAAA
1 CGTATGCATAAGCCAACTGACAAAA
10324049 CGTATGCATAAGCCAACTGACAAAA
1 CGTATGCATAAGCCAACTGACAAAA
10324074 CG
1 CG
10324076 AGTAGGCGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.15
Consensus pattern (25 bp):
CGTATGCATAAGCCAACTGACAAAA
Found at i:10325665 original size:26 final size:26
Alignment explanation
Indices: 10325636--10325686 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10325626 GGTCCGATCC
10325636 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
10325662 TAGACTGGGAATTAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
10325687 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:10326556 original size:25 final size:26
Alignment explanation
Indices: 10326522--10326573 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
10326512 CCGGTCCGAT
10326522 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10326547 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10326573 C
1 C
10326574 CTATGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10326955 original size:902 final size:903
Alignment explanation
Indices: 10324080--10329188 Score: 6694
Period size: 908 Copynumber: 5.7 Consensus size: 903
10324070 AAAACGAGTA
* * * * * *
10324080 GGCGGGCGGCCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATGGA-TAGG-GGTAG
1 GGCGGGCGGGCACGACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
* * *
10324143 GTGGGTTTGGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
10324208 CAATGGTCCTTTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* ** * *
10324273 TTTTCGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAAC
196 TTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* **
10324338 TTGGTAGACATGATCGTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAATTAAAAACTCAAAGT
261 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* *
10324402 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTA
326 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
10324467 GCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTGTTGAGGTTTGATGAGGGATA
391 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* ** * *
10324532 GGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCTTACATCATATGCGCACACCCCTCCGGCC
456 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * *
10324597 CCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGTCGATGCTCCAACGATGGTGCC
521 CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT-GATGCTCCGACGATGGTGAC
* * * * * * *
10324661 CCGACGAAGAAAAATGTGACACCAACACATGCCCGAGCCCTGCATGTTCTGCCACAACCCTTGGT
585 CCGACTAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
** * * *
10324726 CCAATCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
650 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
* * * *
10324791 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAAGGGCGGGATGCGTACGC-CG
715 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCTAG
* * * * **
10324855 GGATCCG-TCGGGTCCCCGTCTGTGTGCTGTCGATCCTGCTACCGTAACCCTCAATCC-GATCTG
780 GGAT-CGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCCAG-TCTG
* *
10324918 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGC--G--GGC-
843 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCTGGCTGGCG
* * * * *
10324974 GGC-CGC-TG-AC-ACTGCCGGCCCAGAAAGACGGGATGCGCAAGCCGGTGGAATCGA-TAGGTG
1 GGCGGGCGGGCACGAC-GTCGG-CCAGAGAGACGGGATGCGCAAGCC-GTGG-ATCGATTGGGTG
*
10325034 GTAGGTGGGTTTAGGGCACATTCTTCATATTT-T-CGGGTGCCAATGGCCATTTTTATGGCTTGT
62 GTAGGTGGGTTTA-GGCACA-TCTTCATATTTCTAC--ATGCCAAT-GCCATTTTTATGGCTTGT
*
10325097 AAA-TCATACAATGG-CGCC-TAAGCCTTCACGAGGTGAAGTTTCATGGCAAGATGACTCGTTTT
122 AAATTCATACAATGGTC-CCTTAAGCCTTCAC---GTGAAGTTTCATGGCAAGACGACTCGTTTT
*
10325159 CTATTTTTCCATGGATTTTTTTCCAAAACTTTTTACG-GGTTCGAGATTTTTTAAAAATTTTTTC
183 CTATTTTT-CAT-GA--TTTTT--GAAACTTTTT--GTGGTTCGAGATTTTTT-AAAATTTTTTC
* * * * * * * *
10325223 G-GAGGATTTTTGGACCC-AACATGGTGGACGTGATCCTTGTA--TTTTGTAGCATGCA-AAAAA
239 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
10325283 AATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCA
304 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
10325346 -ACACTTTAATGGCTAC-GGCAGC-AACCTGTAAAATCTC-AATGCTCTTTTAAGGGGGTGTGAG
369 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAG
* *
10325407 TTCTC-AGGTTTGCATGAGGGATA-GGGGCCAATATAAGGGCCAACTACCAGCACCCATCACACA
433 TTCTCGAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
10325470 TCATGCGCGCACACCCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTT
497 TCATGTGCGCACACCCCCC-CGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
10325535 C-GTCGATGCTCCGGCGATGGTGTCCCG-GTGAAGAAAAAAGTGACACCAGCACATGCCTGAGCC
561 CGGT-GATGCTCCGACGATGGTGACCCGACT-AAGAAAAATGTGGCACCAGCACATGCCCGAGCC
* * *
10325598 CAGCATGTGTTGCCGCAACACTCGGTCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTT
624 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
10325663 AGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCTGCCCAGCCG
689 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCG
* * * * * * * * *
10325727 ACGAGAGGGGCGAGATGCGCAAG-TCGGGGATCGGCCGGGT-CCCCTCTACGTGCTATCGATCCT
753 GCCAGAAGGGCGGGATGCGTAAGCT-AGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * ** * * * *
10325790 ACT-AC-TAACCCTTGGTCTGGTCCGATCTTGGATTGGGAATGAACTCCGTATGCCTAAGCCAAC
817 GCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
10325853 CGATG-AA--A------T---G
882 CGATGAAACGAGCTGGCTGGCG
* * * * * *
10325863 GGCGGGCGGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGCTCGATAGGGTGGTAG
1 GGCGGGCGGGCACGACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
* * ** *
10325928 GTGGGTTTAGACACATCTTCATATCTCTATGTGCCAATGCCATTTTTATGGTTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
10325993 CAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
10326058 TTCTTGAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCTCCAAAC
196 TTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
*
10326123 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAGTCAAAGT
261 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
* * *
10326188 GTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTATTGGCTACTGCCA
326 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* ** *
10326253 GCAAACCTGTAAAATCTCAATTGCTCAGTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
391 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
10326318 GGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACGTCATGTGCGCACACCCCCCCGACC
456 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
** * * ** *
10326383 CCCCGATCATCGGAACTTCAATGCTGCCAATTAGGTTCTCCGGTGATGCTCCGACGATGGTGACC
521 CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGACC
* * * *
10326448 CGACTAAGAAAAATGTGGCACCAGTACATGCCCGAGCCCAGCATGGGCTACCGCAACCCTCGATC
586 CGACTAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
10326513 CGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
651 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
* ** * *
10326577 TGTCAATGCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCTAGC
716 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCTAGG
** * * *
10326642 GATCGACCGGGTCCCCCTCTGCGTTTTGCCAATCCTGTTGCCGTAACCCTCGGTCCAGTCTGATC
781 GATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCCAGTCTGATC
*
10326707 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGGTGAAACGAGCTGGCTGGCG
846 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCTGGCTGGCG
* * *
10326765 GGCGGGCGGGCACGACGTCAGCCAGAGAGACGGGATGCGCTAGTCGTGGATCGATTGGGTGGTAG
1 GGCGGGCGGGCACGACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
10326830 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
10326895 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* *
10326960 TTTTTGAAACTTTTT-TCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAA
196 TTTTTGAAACTTTTTGT-GGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
* *
10327024 CTTGGTAGACATGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAATG
260 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
*
10327089 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
10327154 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
10327219 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCACACCCCCCCGCC
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * *
10327284 CCCCCGATCATCGGAACCTCAATGCCGCCGATTCAGGTTTTCCGGTGATGCTCCGACGATGGTGA
520 CCCCCGATCATCGGAACCCCAATGCCGTCG-GTCAGGTTCTCCGGTGATGCTCCGACGATGGTGA
* *
10327349 CCCGACTAAGAAAAATGTGGCACCAGTACATGCCCGAGCCCAGCATCGTGGCTTACCGCAAACCC
584 CCCGACTAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT-GT-GC-TGCCGC-AACCC
* *
10327414 TCTGATCCGGTCTGA-CTTA-ACCTGGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCT
645 TC-GGTCCGGTCCGATCTTAGA-CT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT
* ** *
10327476 GTATGCCTATGTCAATGCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCG
707 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCG
* ** * * *
10327541 TAAGCTAGCGATCGACCGGGTCCCCCTCTGCGTTTTGCCAATCCTGTTGCCGTAACCCTCGGTCC
772 TAAGCTAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCC
*
10327606 AGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGGTGAAACGAGCTGGCTGG
837 AGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCTGGCTGG
10327671 CG
902 CG
* * *
10327673 GGCGGGCGGGCACGACGTCAGCCAGAGAGACGGGATGCGCTAGTCGTGGATCGATTGGGTGGTAG
1 GGCGGGCGGGCACGACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
10327738 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
10327803 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* *
10327868 TTTTTGAAACTTTTT-TCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAA
196 TTTTTGAAACTTTTTGT-GGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
* *
10327932 CTTGGTAGACATGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAATG
260 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
*
10327997 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGT
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
10328062 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
10328127 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-
* * * ** * *
10328191 CCCCCCGATCGTCGGAAACCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
519 CCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGA
* * * * *
10328256 CCCGACGAA-AAAAATGTGGCACCACCACATGCCTGAGCCCAGCATGTGTTGTCGCAACCCTCGG
584 CCCGACTAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
10328320 TCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCC
649 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
* * ** * * * * ** **
10328385 TAAGTCAACCCACGAATCGAGTGTATGGGCGCTCAACCGACCAGAGGGGCGGGTTGCACAAGCCG
714 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCTA
** * * * * * * * * * *
10328450 GGGATCGGTCGGGTCTCCCTCTACGTGCTGTTGATCCTACTGCTGCAACGCTTC-GTTCGGTTTG
779 GGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGTAAC-CCTCGGTCCAGTCTG
* * * *
10328514 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAG-TGGACAGGC-
843 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCTGG-CTGGCG
* * * * * *
10328574 GGC---CGGGCTCTACGTCGGCCAGAGAGACGAGATCCGCAAGCCTTGGATCGATAGGGTGGTAG
1 GGCGGGCGGGCACGACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
* * * *
10328636 GTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCTTA
66 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
10328701 CAATGGTCTCTTAAACCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * *
10328766 TTTTTGAAACTTTTTGAT-ATTCGAGATTTTTTAAAATTTTTTCAAAAGGCGTTTTGGCCCCCAA
196 TTTTTGAAACTTTTTG-TGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA
* * * * **
10328830 CTTGGAAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAGAAACTGGAAG
260 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
10328895 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
10328960 AGCAAACTTGTAGAACCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
10329025 AAGGGGCCAATCTAAGGGCCAAGTAGCAGCTCCCATC-CACATCATGTGCGCACA--CCCCCGGC
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * * * * *
10329087 CCCCTGATCGTCAGAATCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGGTCCGTCGATGGTGAC
520 CCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGAC
* **
10329152 CCG-GTGAAGAAAAATGCAGCACCAGCACATGCCCGAG
585 CCGACT-AAGAAAAATGTGGCACCAGCACATGCCCGAG
10329189 GCGCTTAACC
Statistics
Matches: 3765, Mismatches: 353, Indels: 192
0.87 0.08 0.04
Matches are distributed among these distances:
878 13 0.00
879 25 0.01
880 30 0.01
882 16 0.00
883 14 0.00
884 35 0.01
885 20 0.01
886 52 0.01
887 118 0.03
888 231 0.06
889 95 0.03
890 80 0.02
891 32 0.01
892 30 0.01
893 8 0.00
894 11 0.00
895 78 0.02
896 101 0.03
897 116 0.03
898 749 0.20
899 53 0.01
900 20 0.01
901 47 0.01
902 729 0.19
903 113 0.03
904 2 0.00
905 33 0.01
906 66 0.02
907 68 0.02
908 780 0.21
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (903 bp):
GGCGGGCGGGCACGACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGACC
CGACTAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCTAGG
GATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCCAGTCTGATC
TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCTGGCTGGCG
Found at i:10329939 original size:776 final size:776
Alignment explanation
Indices: 10328412--10329963 Score: 2034
Period size: 776 Copynumber: 2.0 Consensus size: 776
10328402 CGAGTGTATG
* * * ** *
10328412 GGCGCTCAACCGACCAGAGGGGCGGGTTGCACAAGCCGGGGATCGGTCGGGTCTCCCTCTACGTG
1 GGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCAAGTCTCCCTCTACATG
* * * *
10328477 CTGTTGATCCTACTGCTGCAACGCTTCGTTCGGTTTGATCTTAGACTGGGAATGAACTCCGTATG
66 CTGTCGATCCTACTGCTGCAACGCTTCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
10328542 CCTAAGCCAACCAACGAAACGAGTGGACAGGCGGCCGGGCTCTACGTCGGCCAGAGAGACGAGAT
131 CCTAAGCCAACCAACGAAACAAGCGGACAGGCGGCCGGGCACTACGCCGGCCAGAGAGACGAGAT
* * *
10328607 CCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCA
196 CCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
* *
10328672 ATGCCATTTTTATGGCTTCTAAATTCTTACAATGGTCTCTTAAACCTTCATGTGAAGTTTCATGG
261 ATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCTCTTAAACCTTCACGTGAAGTTTCATGG
* * *
10328737 CAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTGATATTCGAGATTTTTTAAAA
326 CAAGACGACTCGTTTCATATTTTTCATGATTTTTGAAACGTTTTGAGATTCGAGATTTTTTAAAA
* * *
10328802 TTTTTTCAAAAGGCGTTTTGGCCCCCAACTTGGAAGACATGATCCTTGTATTTTTGTTGGCGTGC
391 TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGAAGACATGATCCTTGTATTTTTGTTGGCATGC
* **
10328867 ACAAAAAAATTCAGCTAGAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
456 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
10328932 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAGAACCTCAAATGGTCTTTAAGGGGG
521 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGGTCTTAAACGGGG
* * * * *
10328997 TGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATCTAAGGGCCAAGTAGCAGCTCCCATC
586 TGTGAGTTCTCAAAGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
10329062 CACATCATGTGCGCACACCCCCGGCCCCCTGATCGTCAGAATCCCAATGCCGTCGGTCAGGTTCT
651 CACATCACGTGCGCACACCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCGCCGATCAGGTTCT
* * * **
10329127 CTGGCGATGGTCCGTCGATGGTGACCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGA
716 CCGACGATGCTCCGTCGATGGTGACCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGA
* * * **
10329188 GGCGCTTAACCGGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGGCCAAGT-TCCCTTCTACAT
1 GGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCAAGTCTCCC-TCTACAT
* * * *
10329252 GCTGTCGATCCTGCTG-TCGCAACGCTTGGTCCAGTCTGATGTTAGACTGGGAATGAACTCTGTA
65 GCTGTCGATCCTACTGCT-GCAACGCTTCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * ** *
10329316 TGCCTAAGCCAATCGACGGAATAAGC-GAGCGGGCGGGTGGGCACTACGCCGG-CAGAGAGACGG
129 TGCCTAAGCCAACCAACGAAACAAGCGGA-CAGGCGGCCGGGCACTACGCCGGCCAGAGAGACGA
** * *
10329379 GATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
193 GATCCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
* * *
10329444 CCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTC-CTTAAGCCTTCACGTGAAGTTTCA
258 CCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCTCTTAAACCTTCACGTGAAGTTTCA
* * * * *
10329508 TGGCTAGGATGACCTCGTTTCCTATTTTTCATGATTTTT-AAACGTTTTGCGGTTCCCGAGATTT
323 TGGC-AAGACGA-CTCGTTTCATATTTTTCATGATTTTTGAAACGTTTTGAGATT--CGAGATTT
*** * *
10329572 TTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGAT-CTTGTATTTTT-TT
384 TTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGAAGACATGATCCTTGTATTTTTGTT
*
10329635 GGCTATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
449 GGC-ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
10329700 AGTGT-CCCATTT-AGACACTTTAATTGTTACTGGCAGC-AACCTGTAAAATCTCAAAT-TTCTT
513 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGGTCTT
* *
10329761 AAACTGGGTGTGAGTTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
578 AAACGGGGTGTGAG-TTCTCAAAGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCA
* *
10329826 GCACCCATCGCACATCACGTGCGCATACCCCTCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG
642 GCACCCATC-CACATCACGTGCGC--ACACC-CCCGGCCCCCCGATCGCCAGAACCCCAATGCCG
* * *
10329891 CCTATTAGGTTCTCCGACGATGCTCCGGT-GATGGTG-CCCGACGAAGAAAAATGCGGCACCAGC
703 CCGATCAGGTTCTCCGACGATGCTCC-GTCGATGGTGACCCGACGAAGAAAAATGCAGCACCAGC
10329954 ACATGCCCGA
767 ACATGCCCGA
10329964 ACCCATCATG
Statistics
Matches: 668, Mismatches: 94, Indels: 28
0.85 0.12 0.04
Matches are distributed among these distances:
772 15 0.02
773 69 0.10
774 62 0.09
775 140 0.21
776 274 0.41
777 106 0.16
778 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (776 bp):
GGCGCTCAACCGACCAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCAAGTCTCCCTCTACATG
CTGTCGATCCTACTGCTGCAACGCTTCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCAACGAAACAAGCGGACAGGCGGCCGGGCACTACGCCGGCCAGAGAGACGAGAT
CCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
ATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCTCTTAAACCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTCATATTTTTCATGATTTTTGAAACGTTTTGAGATTCGAGATTTTTTAAAA
TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGAAGACATGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGGTCTTAAACGGGG
TGTGAGTTCTCAAAGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
CACATCACGTGCGCACACCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCGCCGATCAGGTTCT
CCGACGATGCTCCGTCGATGGTGACCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGA
Found at i:10330715 original size:26 final size:27
Alignment explanation
Indices: 10330667--10330720 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
10330657 CTGGTCTGAT
* *
10330667 CTTAGACTGGGAAATGAAGTCCGCATG
1 CTTAGACTGAGAAATGAACTCCGCATG
*
10330694 CTTAGACTGAG-AATGAACTCCGTATG
1 CTTAGACTGAGAAATGAACTCCGCATG
10330720 C
1 C
10330721 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (27 bp):
CTTAGACTGAGAAATGAACTCCGCATG
Found at i:10331596 original size:26 final size:26
Alignment explanation
Indices: 10331567--10331619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10331557 CCGGTCCGAT
* *
10331567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
10331593 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
10331619 C
1 C
10331620 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:10332027 original size:26 final size:26
Alignment explanation
Indices: 10331993--10332045 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10331983 TTTTCTATTT
* *
10331993 TTCACGATTTTTGAAACTTTTTGCGG
1 TTCAAGATTTTTGAAAATTTTTGCGG
* *
10332019 TTCAAGATTTTTTAAAATTTTTTCGG
1 TTCAAGATTTTTGAAAATTTTTGCGG
10332045 T
1 T
10332046 AGGATTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTGCGG
Found at i:10333412 original size:26 final size:26
Alignment explanation
Indices: 10333376--10333425 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
10333366 CATCCCCGAT
10333376 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10333402 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
10333426 CACCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10333682 original size:912 final size:896
Alignment explanation
Indices: 10330283--10336113 Score: 7018
Period size: 900 Copynumber: 6.5 Consensus size: 896
10330273 CAGAGAGACG
* * *
10330283 TTGTACTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTGTGTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
10330348 CCATTTGAAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
66 CCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
10330413 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
130 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
10330478 GGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCTCTGATCACTGGA
195 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCACCGGA
* *
10330542 A-CCTCAATGCCGCCTGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
259 ACCCT-AATGCCGTCGGTCAGGTTC-TCGACGATGCTCCGACGAT-GTGCCCCGACGAAGAAAAA
* * * * *
10330606 T-ACGGCACCAGCACATGCCCAAACCCAGCATGTGCTGCCGTAATCCTCGGTCTGGTCT--GATC
321 TGTCGGCACCAGCACATG-CCTAGCCCAGCATGTGCTGCCGCAAACC-C--T-TGGTCTCCGATC
* * *
10330668 TTAGACTGGGAAATGAAGTCCGCATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCC
381 TTAGACTGGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** ** * *
10330733 ACAAAATTAGTGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCACAAGCCGGGGATCGATCG
445 ACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCG
* ** * *
10330798 AGTCCCCCTCTGCGTGCTACCGATCCTGCTATGGCAACCCTCGGTCTGGTTCAATCTTAGACTAG
510 GGTCCCCCTCT--GTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGG
* * * *
10330863 GAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC-A-AGC--GGACGGGCAGGCGGGCACTAC
573 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGTGGGCGGGCGGGCGGGCACTAC
* * * *
10330924 GCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTAGTAGGTCGGTTTAGGCACGT
638 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
10330989 CTTCATATTTCTACATGCAAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGC
703 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* ** *
10331054 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATAATTTTTTAAACTTTTTG
768 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
** * * *
10331119 CCGTTCGGGATCTTTTAAAATTTTTT-GGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATC
833 TGGTTCGAGATTTTTTAAAATTTTTTCGG-AAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATC
10331183 C
896 C
* * * *
10331184 ATGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAGCTCGAAGTGTTCAAGATTTTGTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
10331249 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGTAGTAAACCTGTAAAATC
66 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
10331314 TCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGCCCAATATAAGG
131 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * **
10331379 GCCAAGTACCAGCACCCATCACACTTCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAAC
196 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAAC
* * *
10331444 CCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATG-
261 CCTAATGCCGTCGGTCAGGTTC-TCGACGATGCTCCGACGAT-GTGCCCCGACGAAGAAAAATGT
* * * * * * *
10331508 CCGCACCGGCACATGCCCAAGCCTAGCATGTGCTACCG-TAACCCTCGGTCCGGTCCGATCTTAG
324 CGGCACCAGCACATG-CCTAGCCCAGCATGTGCTGCCGCAAACCCTTGGT-C--TCCGATCTTAG
* * *
10331572 ACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAACCCATGAA
385 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
10331637 ACGAACGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGAT-----AGCCGTGGATCGGCCGGGTCC
450 ACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCC
* * * *
10331697 CCCTCTGTGTGCTGCCGATCCTACTATCGCAACCCTCAGT-TCGGTCCAATCTTAGACTGGGAAT
515 CCCTC--TGTGCTACCGATCCTGCTACCGCAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAAT
** * * * * * * *
10331761 GAACTCAATATGCCTAAGCCAACCAATGAAACGAGCGGGCGAGCGGGCAGGCGGGCACTACGTCG
577 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGTGGGCGGGCGGGCGGGCACTACGCCG
* * *
10331826 GCCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTC
642 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
10331891 ATATTTCTACAT-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
707 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
10331955 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
772 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGT
* * *
10332020 TCAAGATTTTTTAAAATTTTTTCGGTAGGATTTTTGGCCCCAAACTTAGTAGACGTGATCC
837 TCGAGATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
10332081 TTGTATTTATGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * * *
10332146 CCATTTG-AAAAAGTGTCCCCATTTCAAATACTTTAATGCCTACTGGAAGCAAACCTGTAAAATA
66 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
10332210 TCAAATGCTCGTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
131 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
10332275 GCCAAGTACCAGTACCCATCGCACATCATGTGTGCACACCCACCCCGGCCCCCCCGATCA-CGGA
196 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGATCACCGGA
* * * * *
10332339 ACCCAAATACCGTCGGTCAGGCTCTCCGACGATGCTCCGGCGAAGGTGCCCCGGA-GAAGAAAAA
259 ACCCTAATGCCGTCGGTCAGGTTCT-CGACGATGCTCCGACG-ATGTGCCCC-GACGAAGAAAAA
* * * ** * ** *
10332403 --TAGGCACCAGCACATGCCCGAACCCAGCATGTGCTGTTG-TAACCCTCAGTCCGGTCCGATAT
321 TGTCGGCACCAGCACATG-CCTAGCCCAGCATGTGCTGCCGCAAACCCTTGGT-C--TCCGATCT
* * * *
10332465 TAGACTGGGAATGAACTCCATGTGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
382 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
10332530 GAAAC-AAGCGTGCAGGCGCTCAGCCGGCC-GAGGGGCGAGATGCACAAGCCGGGGATCGGTCGG
447 GAAACGAA-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGG
* * * ** *
10332593 GTCCCCCTTTGTGTCCTGCCGATCCTACTGTCACAACCCTCGGT-TCGGTCCAATCTTAGACTGG
511 GTCCCCCTCTGTG--CTACCGATCCTGCTACCGCAACCCTCGGTCT-GGTCCAATCTTAGACTGG
* * *
10332657 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCT-GGCGGGTGGGAGGGCACTA
573 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCG-TGGGCGGGCGGGCGGGCACTA
*
10332721 CGCCGGCCAGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
637 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
10332786 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTGATACAATGGTCCCTTAAG
702 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
10332851 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTGTT
767 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* *
10332916 GTGGTTCGAGATTTTTTTAAAATTTTTTCGGAAGCAATATCTGGCCCCAAACTTGGTAGACGTGA
832 GTGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAG-GAT-TTTGGCCCCAAACTTGGTAGACGTGA
10332981 TCC
894 TCC
* * * *
10332984 TTGTTTTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA
1 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
10333049 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATC
66 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
10333114 TCAAATGCTCTTTAAGGGGGTGTGAGGTTCTCGAGGTTTG-TGAGGGATAGGGGGCC-ATATAAG
131 TCAAATGCTCTTTAAGGGGGTGTGA-GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * ** * * *
10333177 GCGCCAA-TACCAG-AACCATCACCCATCATGTTGCTTAC-CTCCACCAGGCCTCCCCGATTACC
195 G-GCCAAGTACCAGCACCCATCGCACATCATG-TGCGCACAC-CC-CCCGGCCCCCCCGATCACC
** *
10333239 GGAAACCCTAATG-CGTCGGTCAGGTTAC-CGGTGATGCCTCC-ATGAAT-TGCCCGCCGACGAA
256 GG-AACCCTAATGCCGTCGGTCAGGTT-CTCGACGATG-CTCCGACG-ATGTG-CC-CCGACGAA
* *
10333300 GATAATAATGTCGGCACCAGCACATGCCTAGCCCCAGCATGTTGGCTGTCGCAAACCGCGTTAGT
315 GA-AA-AATGTCGGCACCAGCACATGCCTAG-CCCAGCATG-T-GCTGCCGCAAACC-C-TTGGT
**
10333365 CCATCCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACACC
373 -C-T--CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ***
10333430 TAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGCCGGCCAGA-GGGCGAGATGTGTAAGCCG
434 TAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCG
* * * * * *
10333494 AGGATCGGTCGGGTTCCCACTATGTGCTACCGATCCTGCTGCCGCAACCCTCTGTCTGGTCCGAT
499 GGGATCGGTCGGG-TCCCCCTCTGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAAT
* * *
10333559 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGCGTGGGCGGGCGGG
563 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGTGGGCGGGCGGG
* * * * * * *
10333624 TGGGCACTATGCCAGCCAGAGAGATGAGATACGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGT
628 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
10333689 TTGGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
693 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
10333754 TCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTTACGATCTTTG
758 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
10333819 AAACTTTTTGTGGTTTGAGATTTTTTAAAATTTTTTCAGAATGTG-TTTTGGCCCCAAAATTGGT
823 AAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAA-G-GATTTTGGCCCCAAACTTGGT
10333883 AGACGTGATCC
886 AGACGTGATCC
*
10333894 TTGTATTTTTGTTGGCATGC-CAAAAAATATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTG
1 TTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
10333958 ACCATTTGAAAAAAAG-GTCCCAATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
65 ACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
10334022 TCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
129 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
10334087 AGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCTCCCCCGGCCCCCCCGATCGCCA
194 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCACCG
* * * * *
10334152 GAACCCCAATGCCGTCGATCAGGTTCTC--CGA---T--GATG--GTGCCCCAACGAAGAGAAAT
257 GAACCCTAATGCCGTCGGTCAGGTTCTCGACGATGCTCCGACGATGTGCCCCGACGAAGAAAAAT
* *
10334208 AT-GGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGC-AACCCTTGGTCTGGTCCGATCTT
322 GTCGGCACCAGCACATGCCT-AGCCCAGCATGTGCTGCCGCAAACCCTTGGTC---TCCGATCTT
* * *
10334271 AGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACG
383 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
10334336 AAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-GACTGGG
448 AAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTC-GGG
* * * *
10334400 T-CCCCTCTGCATGCTAGCGATCCTGCTACCGCAACCATCGGTCTGTTCCCATCTTAGACTGGGA
512 TCCCCCTCTG--TGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGA
* * * * * * *
10334464 ATGAACTTCATATGCCTATGCCAACCGACGAAAACGAGC-C-CGGCCGGG-TGGCGGGCTCTACG
575 ATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGAGCGCGTGGGCGGGCGGGCGGGCACTACG
* * *
10334526 CTGGCTAGGAGAGACGGGCATGCGCAAGCCGTGGACCAGATACGGGTGGTAGGTGGGTTTAGGGC
639 CCGGCCA-GAGAGACGGG-ATGCGCAAGCCGTGGATC-GATA-GGGTGGTAGGTGGGTTTA-GGC
* ** *
10334591 ATAATCCTTCCATATTTCTATGTG-CAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCC
699 A-CAT-CTT-CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
10334655 CTTAAGCCTTCACGTGGAAGTTTCATGGCATGCCGCACTCATTTTCTATTTATTCA-GTAATTTT
761 CTTAAGCCTTCACGT-GAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTT-TTCACG-ATTTTT
* * *** * *
10334719 GAAACTTTTT-CGGTTCGGGGATTTCCCAAAATTTTTTCAGAAGGAGTTTGGCCCCAAACTTGGG
822 GAAACTTTTTGTGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGATTTTGGCCCCAAACTT-GG
*
10334783 TAAGACATGATCC
885 T-AGACGTGATCC
* * * *
10334796 TTGTATTTTT-TTCGGCAAAGCATAACAAAACTTCCAGCTAAACACTCGAAGTGTACAAGATTTT
1 TTGTATTTTTGTT-GGC-ATGCACAA-AAAAATT-CAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
10334860 GTGACCATCTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAATCTGTA
62 GTGACCAT-TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
10334925 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
126 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * **
10334990 TAAAGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCCCGG--CCCCCGATTTG
191 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGA-TCA
* * * * *
10335053 CCAGAACCCTAATGCCGTCGATTAGGTTCTCCGACGATGCTCCGACGATGGGGCCCCAACGAAGA
254 CCGGAACCCTAATGCCGTCGGTCAGGTTCT-CGACGATGCTCCGACGAT-GTGCCCCGACGAAGA
* * *
10335118 AAAATG-CGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGC-AACCCTCGGTCTGGTCTG
317 AAAATGTCGGCACCAGCACATGCCT-AGCCCAGCATGTGCTGCCGCAAACCCTTGGTC---TCCG
*
10335181 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAAC
378 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
10335246 CCACGAAACGAGCGTGAGGGCGCTCAGCCGGTCAGAGGGGCGGGATGTACAAGCCGGGGATC-GA
443 CCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGT
* * * * *
10335310 CTGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAACCATCGGTCCGATCCCATCTTAGAC
508 C-GGGTCCCCCTCT--GTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGAC
* * * * * * *
10335375 TGGGAATGAACTTCGTATGCCTATGCCAACTGACGAAACGAGCGGGTGGGCGGGTGGGCAGGCTC
570 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCGTGGGCGGGCGGGCGGGCAC
* * *
10335440 TACGCTGGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGC
635 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GGC
* * *
10335505 ATATCTTAATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
699 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
10335570 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGACACTT
764 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * *
10335635 TTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACTTGGTAGATGTG
829 TTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAA-GGATTTTGGCCCCAAACTTGGTAGACGTG
10335700 ATCC
893 ATCC
* ** * * *
10335704 TTGTATTTTTCTTCCCATGCACAAAAAAAAATCAGCTAAAAACTAGAAGTGTATAAGATTTTGTG
1 TTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
10335769 TCCATTTGAAAAAAGTGTCGCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
65 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
10335834 CTCAAATGCTCTTTAAGGGGGTGTG-GCTTATCGAGGTTTGATTAGGGATAGGGGGCCAATATAA
130 CTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * **
10335898 GGGCCAAGTACCAGCACCCATCACACATCTTGTGCGCACACCCCCCGACCCCTCCGATCGTCGGA
194 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGA
* * * * * * * *
10335963 ACCCCAATGTCGTCGATCCGATTCTCTGGCGATGCTCCGACGATGGTGCCTCGATGAAG-AAAAT
259 ACCCTAATGCCGTCGGTCAGGTTCTC-GACGATGCTCCGACGAT-GTGCCCCGACGAAGAAAAAT
* * * * **
10336027 -ACGGCAGCAGCACATGCCCTAGTCTAGCATGTGCTG-C-CATAACCCTCAGTCCGGTCCGATCT
322 GTCGGCACCAGCACATG-CCTAGCCCAGCATGTGCTGCCGCA-AACCCTTGGT-C--TCCGATCT
10336089 TAGACTGGGAATGAACTCCGTATGC
382 TAGACTGGGAATGAACTCCGTATGC
10336114 CTAAGCCAAC
Statistics
Matches: 4321, Mismatches: 466, Indels: 283
0.85 0.09 0.06
Matches are distributed among these distances:
891 20 0.00
892 114 0.03
893 119 0.03
894 110 0.03
895 37 0.01
896 291 0.07
897 285 0.07
898 201 0.05
899 130 0.03
900 498 0.12
901 240 0.06
902 90 0.02
903 150 0.03
904 226 0.05
905 279 0.06
906 196 0.05
907 36 0.01
908 23 0.01
909 68 0.02
910 220 0.05
911 88 0.02
912 395 0.09
913 124 0.03
914 37 0.01
915 209 0.05
916 100 0.02
917 16 0.00
918 19 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAAC
CCTAATGCCGTCGGTCAGGTTCTCGACGATGCTCCGACGATGTGCCCCGACGAAGAAAAATGTCG
GCACCAGCACATGCCTAGCCCAGCATGTGCTGCCGCAAACCCTTGGTCTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCT
GTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGAGCGCGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGAGATTT
TTTAAAATTTTTTCGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCC
Found at i:10334297 original size:26 final size:26
Alignment explanation
Indices: 10334268--10334320 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10334258 CTGGTCCGAT
*
10334268 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
10334294 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
10334320 C
1 C
10334321 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:10335219 original size:26 final size:26
Alignment explanation
Indices: 10335183--10335235 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10335173 CTGGTCTGAT
10335183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10335209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10335235 C
1 C
10335236 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10337702 original size:26 final size:26
Alignment explanation
Indices: 10337651--10337702 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10337641 CTGGTCTGAT
* *
10337651 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
10337677 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
10337703 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10340572 original size:25 final size:26
Alignment explanation
Indices: 10340533--10340584 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
10340523 CAGGTCCAAT
10340533 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10340559 CTTAGAC-GGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10340584 C
1 C
10340585 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10340953 original size:889 final size:877
Alignment explanation
Indices: 10338992--10341312 Score: 3199
Period size: 882 Copynumber: 2.6 Consensus size: 877
10338982 CGGGCTGGCG
* **
10338992 GGTGGGCAAGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAG
1 GGTGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
* * * *
10339057 GTGGGTTTAGGCACATCTACATATTTCTATGTGCCACTACCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
10339122 CAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGAAAGACGACTCATTTTCTATTTTTCACGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** * ** * *
10339187 TTTTTGAAACCTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAATGAGTTTTGGCCCCAAAC
196 TTTTCAAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAAC
* *
10339252 TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
260 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
10339317 GTACAAGATTTTGTGAGCATTTGAAAAAAGTATCGCCATTTCAGACATTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
10339382 GCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA
10339446 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCT
454 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-
* *
10339510 CCTCGATCGCTGGAACCCTAATGCCGCCGGTAAGGTTCTCGACGATGCTCCGGTGATGGTGCCCC
518 CCCCGATCGCTGGAACCCCAATGCCGCCGGTAAGGTTCTCGACGATGCTCCGGTGATGGTGCCCC
* ** * *
10339575 GGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATATGCTGTCGCAACCCTCGGTCC
583 GATGAAGAAAAATACGAAACCAGCACATGCCCGAGCCCAGCATATGCTGCCGCAACCCTCGGTCA
* * * *
10339640 GGTCCGAGCTTAGATTGGGAATGAACTCTGTAAGCTTAGTCTGGGAATGAACTCCGTATGCCTAA
648 GGTCCAAGCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
10339705 GTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCATAGGGGCTGGATGCGTAAGCCGGAG
713 GTCAACCCACGAAACGAGCGTACGGACACTCAGCCGACCAGAGGGGCAGGATACGCAAGCCGGAG
** * * *
10339770 ATCGGTCGGGTCCCCCTTTGCATACTGCCGCAACCCTTGATCCGATCTAATCTTAGACTGGAATG
778 ATCGGAAGGGTCCCCCTTTGCATACTGCCACAACCCTAGATCCGATCCAATCTTAGACTGGAATG
* *
10339835 AACTTCGTATGTATAACCAACCGACGAAACGAGCGA
843 AACTCCGTATGCATAACCAACCGACGAAAC-AGCGA
* * * * * *
10339871 GCGGGCGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCACAAGTCATGGATCGATAGGGTGG
1 ---GGTGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGG
* * **
10339936 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCTTTTTTATTTCTTGTAAATTC
63 TAGGTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
10340001 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
128 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
*** * **
10340066 TGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGACTTTTGGGACAA
193 TGATTTTCAAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAA
* * *
10340131 AACCTGGTAGAGGTGATCCTTCTATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGA
257 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGA
* * *
10340196 AGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAAACACTTTGATGGCTACTG
321 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
10340261 GCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGATGTTTGATGA-A
386 GCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGA
* **
10340325 GGATAGGGGGCTAATATAAGGGCCTAAGTACCAGCACCCATCGCACATCCCGTGCGCACACCCCC
450 -GATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
10340390 CGGCCCCCCGATCACCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTTCGGTTATGG
513 CGGCCCCCCGATCGCTGGAACCCCAATGCCGCCGGTAAGGTTCT-CGACGATGCTCCGGTGATGG
* * * * *
10340455 TGCCCCGAT-AAGAAAAATGCGAAAGCAGCACCTGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
577 TGCCCCGATGAAGAAAAATACGAAACCAGCACATGCCCGAGCCCAGCATATGCTGCCGCAACCCT
* *
10340519 CGGTCAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-GGGAATGAACTCCGTAT
642 CGGTCAGGTCCAAGCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTAT
* * * *
10340583 GCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCAGGATATGCAAG
707 GCCTAAGTCAACCCACGAAACGAGCGTACGGACACTCAGCCGACCAGAGGGGCAGGATACGCAAG
* * *
10340648 GCGGCGATCGGAAGGGTCCGCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAG-T-CGAT
772 CCGGAGATCGGAAGGGTCC-CC-CT---T--TG-C-A---TACTGCCACAACCCT-AGATCCGAT
* *
10340711 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-A-CGA
824 CCAATCTTAGACT-GGAATGAACTCCGTATGCATAA-CCAACCGACGAAACAGCGA
* *
10340764 -GTGGGCAGGCACTACGCCGGCCAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGGTAG
1 GGTGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
* * *
10340828 GTGGGTTTAGGTACATCTTCATATTTCTGTTTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
10340893 CAACGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
*
10340958 TTTTCAAAACTATTTACGGTTCGGTATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAA
196 TTTTCAAAACTTTTTACGGTTCGG-ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGG-CCCAAAA
* * * * *
10341023 -TTGGTAGACGTCATCCTTGTATTTTTTTTAGCATGCACAAAAAACTTTAGCTAAAAAATCGAAA
259 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCG-AA
10341087 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
322 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
10341152 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCATTTCTCTAGGTTTGATGAGAGA
387 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGA
* *
10341217 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCCTGGC
452 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
*
10341282 CCCCCCGATCGCTGGAACCACAATGCCGCCG
516 CCCCCCGATCGCTGGAACCCCAATGCCGCCG
10341313 ATCAGAGAGA
Statistics
Matches: 1261, Mismatches: 149, Indels: 51
0.86 0.10 0.03
Matches are distributed among these distances:
881 5 0.00
882 365 0.29
883 3 0.00
884 136 0.11
885 154 0.12
886 37 0.03
888 42 0.03
889 350 0.28
890 100 0.08
891 2 0.00
892 1 0.00
893 4 0.00
894 1 0.00
895 15 0.01
896 35 0.03
897 11 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (877 bp):
GGTGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTCAAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCAAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGCTGGAACCCCAATGCCGCCGGTAAGGTTCTCGACGATGCTCCGGTGATGGTGCCCCGAT
GAAGAAAAATACGAAACCAGCACATGCCCGAGCCCAGCATATGCTGCCGCAACCCTCGGTCAGGT
CCAAGCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTACGGACACTCAGCCGACCAGAGGGGCAGGATACGCAAGCCGGAGATC
GGAAGGGTCCCCCTTTGCATACTGCCACAACCCTAGATCCGATCCAATCTTAGACTGGAATGAAC
TCCGTATGCATAACCAACCGACGAAACAGCGA
Found at i:10341836 original size:528 final size:530
Alignment explanation
Indices: 10340785--10341839 Score: 1693
Period size: 528 Copynumber: 2.0 Consensus size: 530
10340775 CTACGCCGGC
*
10340785 CAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCAT
1 CAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGTACATCTTCAT
**
10340850 ATTTCTGTTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAC
66 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAC
* *
10340915 ATGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATTTTCAAAACTATTTACGGTTC
131 ATGAAGTTTCATGGCAACACGACTCGTTTTCCATTTTTCACGATTTTCAAAACTATTTACGGTTC
* * * * *
10340980 GGTATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTCATCCTTGTAT
196 GGGATTTTTGAAAATTTTTTTCGAAAGAGTTTTGGCCCCAAAATTGGCAGACGTCATCCTTGTAT
* * *
10341045 TTTTTTTAGCATGCACAAAAAACTTTAGCTAAAAAATCGAAAGTGTACAAGATTTTGTGACCATT
261 TTTTCTTAGCATGCACAAAAAAATTCAGCTAAAAAATCGAAAGTGTACAAGATTTTGTGACCATT
*
10341110 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
326 GGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * ** *
10341175 TGCTCTTTAAGGGGGTGTCATTTCTCTAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAA
391 CGCTCTTTAAGGGGGTGTCAGTTCTAGAGGCTTGATGAGAGATAGGGGGCCAATATAAGGGCCAA
* * *
10341240 GTACCAGCACCCATCGCACATCATGTGCGGACACCCCCTGGCCCCCCCGATCGCTGGAACCACAA
456 GTACCAGCACCCATCACACATCATGTGCGGACACCCCCCGGCCCCCCCGATCGCCGGAACCACAA
10341305 TGCCGCCGAT
521 TGCCGCCGAT
***
10341315 CAGAGAGACAGGATTTGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGTACATCTTCAT
1 CAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGTACATCTTCAT
*
10341380 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
66 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAC
* * * * *
10341445 GTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTCCAAAGT-TTTGGCGGTT
131 ATGAAGTTTCATGGCAACACGACTCGTTTTCCATTTTTCACGATTTTCAAAACTATTT-ACGGTT
* * * *
10341509 CGGGATTTTTGAAAA-TTTTTTCGAAAGATTTTTGGCCCCAAACTTTGCAGACGTGATCCTTGTA
195 CGGGATTTTTGAAAATTTTTTTCGAAAGAGTTTTGGCCCCAAAATTGGCAGACGTCATCCTTGTA
* * *
10341573 TTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAGGATTTTGTGACCAT
260 TTTTTCTTAGCATGCACAAAAAAATTCAGCTAAAAAATCGAAAGTGTACAAGATTTTGTGACCAT
10341637 TGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
10341702 ACGCTCTTTAAGGGGGTGTGAGTTCTAGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
390 ACGCTCTTTAAGGGGGTGTCAGTTCTAGAGGCTTGATGAGAGATAGGGGGCCAATATAAGGGCCA
* * *
10341767 AGTACCAGCACCCATCACACATCATGTGTGGACACCCCCCGGCCCCCCTGATCGCCGGAACCCCA
455 AGTACCAGCACCCATCACACATCATGTGCGGACACCCCCCGGCCCCCCCGATCGCCGGAACCACA
10341832 ATGCCGCC
520 ATGCCGCC
10341840 AGTCAGGTTC
Statistics
Matches: 481, Mismatches: 43, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
528 212 0.44
529 80 0.17
530 189 0.39
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (530 bp):
CAGAGAGACAGGATACACAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGTACATCTTCAT
ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCAC
ATGAAGTTTCATGGCAACACGACTCGTTTTCCATTTTTCACGATTTTCAAAACTATTTACGGTTC
GGGATTTTTGAAAATTTTTTTCGAAAGAGTTTTGGCCCCAAAATTGGCAGACGTCATCCTTGTAT
TTTTCTTAGCATGCACAAAAAAATTCAGCTAAAAAATCGAAAGTGTACAAGATTTTGTGACCATT
GGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
CGCTCTTTAAGGGGGTGTCAGTTCTAGAGGCTTGATGAGAGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCACACATCATGTGCGGACACCCCCCGGCCCCCCCGATCGCCGGAACCACAA
TGCCGCCGAT
Found at i:10341979 original size:26 final size:26
Alignment explanation
Indices: 10341950--10342002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10341940 TCCATCCGAT
*
10341950 CTTAGACTAGGAATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
10341976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
10342002 C
1 C
10342003 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:10343595 original size:26 final size:26
Alignment explanation
Indices: 10343566--10343618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10343556 CCGATCTGAT
10343566 CTTAGAATGGGCAA-GAACTCCGTATG
1 CTTAGAATGGG-AATGAACTCCGTATG
*
10343592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10343618 C
1 C
10343619 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:10346074 original size:892 final size:893
Alignment explanation
Indices: 10342819--10346278 Score: 4767
Period size: 896 Copynumber: 3.9 Consensus size: 893
10342809 GCCCAGCATG
* * *
10342819 TGCTGCTGCAACTCTCGGT-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGC-GCAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
10342883 ACTAAC-A-AAACGAGCGTGCGGGCGGGCAGGCGCTACGCCGGCCAGAGAGACGGGATGTGCAAG
64 A-T--CGATGAAC-AGCGTGCGGGC-GGCAGGCACTACGACAGCCAGAGAGACGGGATGCGCAAG
*
10342946 CCGTGGATCGATAGGGTGGTTAGTGGGTGGGATTAGGCACATCTTCATATTTCTGCATGCCAATG
124 CCGTGGATCGATAGGGTGG-TA---GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
10343011 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAA
185 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAA
* *
10343076 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTTAGATTT
250 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAATTT
10343141 TTTCGGAAGGATTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCA-A
315 TTTCGGAAGGATTTTT-ACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACA
*
10343205 AAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
379 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
10343270 TTCAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
444 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
10343335 GAGTTCTC-AAGGTTTGATAATGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
509 GAGTTCTCGAA-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
10343399 ACATCATGAGCGCACACCCCTCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
573 ACATCATGTGCGCACACCCCCCCGG-ACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
10343464 CTTCGTCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCATCAGCACATGCCCGAGC
637 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
** * * * *
10343529 CCAAAATTTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGAATGGGCAA-GAACTCCGTATGC
702 CCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGG-AATGAACTCCGTATGC
*
10343593 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGCGCTCAGCC
766 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * **
10343658 GGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTT-CGATTT
831 GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATG-TTCCGATCC
*
10343721 TGCTGC-CACAGCCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCGCA-A-CCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
10343785 A-CTGATGAAACGAGCGCGCGGGTGGGCAGGCACTACTCCAACCAGAGAGACGAGATGCGCAAGC
64 ATC-GATG-AAC-AGCGTGCGGG-CGGCAGGCACTACGACAGCCAGAGAGACGGGATGCGCAAGC
* ** *
10343849 TGTGGATCGATAGGGTGGTAGGTGGGTTTACACACATCTTCATATTTTTGCATGCCAATGCCATT
125 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
10343914 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
190 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGA
** * ** * *
10343979 CTTGTTTTCTACTTTTCACGATTTTTGAAACTTTTTATGGTTCGGCATTTTTTAAAAATTTTTCG
255 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCG
** * * *
10344044 GAAGGACTTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTACTTTTTTTGGCAAGCAAAAAAAA
320 GAAGGA-TTTTTACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAA
10344109 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
384 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
10344174 ACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
449 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
10344239 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCTAAGTACCAACACCCATCACACATCA
514 CTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
10344304 TGTGCACGCACCCCCCCCGCTGGCCCCCTCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCT
579 TGTG--CGCACACCCCCC-C-GGACCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** *
10344369 CTGGCGATGCTCCAGCGATGGTGCCCCGGTGATGAAAAATGCGGCACCAGCACATGCCTGAGCCC
639 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
* * * * * * * *
10344434 AGTATCTGCTTTCC-CAACCCTCAGTCCAGTCCGATCTTAGACTGGGGATGAACTCTGTATGCTA
704 AGCATGTGC-TGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
10344498 AAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGTGCGCTCAGCCGG
768 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** * *
10344563 CCAGAGGGGCGGGATGCGTAAG-CTGAGGATCGATCGGGTCCCCCTCTATGTGCTACCGAGCC
833 CCAGAGGGGCGGGATGCGCAAGCCAG-GGATCGATCGGGTCCCCCTCTACATG-TTCCGATCC
* *
10344625 TACTGCTGCAACCATCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGC-GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
10344690 TCGACGAA-A-TGAGCGGGC-G--GGCACTAC-ATCGGCCAGAGAGACGGGATGCGTAAGCCGTG
65 TCGATGAACAGCGTGCGGGCGGCAGGCACTACGA-CAGCCAGAGAGACGGGATGCGCAAGCCGTG
10344749 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
129 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
10344814 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGACTCA
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGACTCA
* *
10344879 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTTAGATTTTTTCGGAAG
259 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGGAAG
10344944 GATTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAAATTC
324 GATTTTT-ACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAAATTC
*
10345009 AGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
10345074 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
10345139 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCTCATCACGTG
518 AAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
10345204 CGCACACCCCCCCGGACACCCGATCGCCTGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATG
583 CGCACACCCCCCCGGACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* *
10345269 CTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGC
648 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGC
* * * * * *
10345333 TACCGTAACCCTCGGTCCAACCCGATCTTAGACTGGGAATGATCTTCGTATGCTTGGACTGGGAA
713 TGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * *
10345398 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCATAAGGGC
778 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * *
10345463 AGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCCTCTACATGTTGCCGATCC
843 GGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGTT-CCGATCC
* * *** * *
10345515 TGCTGTCGTATCCCTCGGTCTGGTTTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAAGCCAA
1 TGCTG-CGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
10345580 TCGATGAA-A-CGTGCGGGCGGCGGGCACTACGACAGCCAGAGAGACGGGATGCGCAAGCCGTGG
65 TCGATGAACAGCGTGCGGGCGGCAGGCACTACGACAGCCAGAGAGACGGGATGCGCAAGCCGTGG
10345643 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
10345708 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAATCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGACTCAT
* * * * *
10345773 TTGCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATATTTTT-GAAAG
260 TTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAAT-TTTTTCGGAAG
*
10345837 GAGTTTTT-CCCCAAACTTGGTAGACGTGATCCTTTTA-TTTTTGTTGGCATGCACAAAAAAATT
324 GA-TTTTTACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCACAAAAAAATT
* * * * *
10345900 TAGCTAAAAACTCGATGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCACATTTCAAACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
10345965 ATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGAGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
10346030 GAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
517 GAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * *
10346095 GCGCACA-CCCCCC-AACCCCCCTGTTCGTCGTAACCCCAATGCCGTCGGTCAGGTTCTCTGGCA
582 GCGCACACCCCCCCGGA-CCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCG
* * * ** *
10346158 ATGGC-CAGGCGATGGTGCGCCGATGAAGAAAAATAAGGCACCAACACATGCCTGAGCCCAGCAT
645 AT-GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT
* * ** * * *
10346222 GTGCTGTCGCAACCCTCTGTCCGGTTCGATCTTAGATTGGGAATGAGCTCCGTATGC
709 GTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGC
10346279 CTAAGCCAAC
Statistics
Matches: 2275, Mismatches: 243, Indels: 89
0.87 0.09 0.03
Matches are distributed among these distances:
889 4 0.00
890 228 0.10
891 102 0.04
892 315 0.14
893 277 0.12
894 22 0.01
895 4 0.00
896 453 0.20
898 211 0.09
899 194 0.09
900 10 0.00
901 14 0.01
902 127 0.06
903 244 0.11
904 66 0.03
905 2 0.00
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
TGCTGCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
CGATGAACAGCGTGCGGGCGGCAGGCACTACGACAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGACTCATT
TTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
TTTTTACCCCAAACTTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGACCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC
CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGTTCCGATCC
Found at i:10349493 original size:711 final size:705
Alignment explanation
Indices: 10348011--10349493 Score: 2150
Period size: 711 Copynumber: 2.1 Consensus size: 705
10348001 AATCCGGTTT
* * * * * *
10348011 GATCTTAGGCTGGGAATGAACTCTATATGCTTAAGCCAACCGACGAAACGTGCAGGCGGGCGGGT
1 GATC-TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCGGGC
* *
10348076 ACTACGACAGCCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
65 ACTACGACAGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
10348141 CACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
130 CACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCT
* * **
10348206 TAAGCCTTCACATGAAGTTTCATGGCAAGATGAATCGTTTTCTATTTTTCATGATTTTTGAAACT
195 TAAGCCTTCACATGAAGTTTCATGGCAAGATCAATCGTTTTCTATTTTTCACGATTTTCAAAACT
** * *
10348271 TTTTATGGTTCGGGATTTTTTAAAATATTTTCGAAAGGAGTTTTTCCCCAAACTTGGTAGACGTG
260 TTTTACAGTTCAGGATTTTTTAAAATATTTTCGAAAGGAGTTTTGCCCCAAACTTGGTAGACGTG
* * * *
10348336 ATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGATGTGTACAAGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
10348401 GTGACCATTTGAAAAAATTGTCCCCATTTCAGACAATTTAATGGCTACTAGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTAGCAGCAAACCTGTAA
* *
10348466 AATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAAGGGGCCAATAT
*
10348531 AAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGTTCGTCG
520 AAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCG
* * * **
10348596 TAACCCCAACACCGTCGGTCAGGTTCTGGTGATGCTCCGGTAATGGTGCCCGGCGAAGAAAAATA
585 GAACCCCAACACCGCCGGTCAGGTTCTGATGATGCTCCGACAATGGTGCCCGGCGAAGAAAAATA
* *
10348661 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCACAACCCTCTGTCCGGTCT
650 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCTGTCCGGTCC
* ** * *
10348717 GATCATAGACTGAGAATGTGCTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGC
1 GATC-TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGA----GCAGGCGGGC
* * *
10348782 GGGCACTATGCCAGCCAGAGAGACGGGATGCGCAACCCGTGTATCGATAGGGTGGTAGGTGGGTT
61 GGGCACTACGACAGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTT
****
10348847 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGT
126 TAGGCACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGT
* *
10348912 CCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGA-CAACTCGTATTT-T-TTTTTCACGATTTTC
191 CCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATCAA-TCGT-TTTCTATTTTTCACGATTTTC
* * *
10348974 AAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
254 AAAACTTTTTACAGTTCAGGATTTTTTAAAATATTTTCGAAAGGAGTTTT-GCCCCAAACTTGGT
*
10349039 AGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
318 AGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAAATCAGCTAAAAACTCGAAGTGTAC
* *
10349104 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
382 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTAGCAGCAA
*
10349169 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGG
447 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAAGGG
* *
10349234 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCTC
512 GCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCC
* * *
10349299 CGATCGTCGGAACCCGAATC-CCGCCGGTCAGGTTCTCCGATGATTCTCCGACGATGGTGCCCCG
576 CGATCGTCGGAACCCCAA-CACCGCCGGTCAGGTTCT--GATGATGCTCCGACAATGGTG-CCCG
* * ** *
10349363 GCGAAGAAAAATGCA-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC-GCTT
637 GCGAAGAAAAAT-AAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCTG-TC
10349426 CGGTCC
700 CGGTCC
* * ** *
10349432 GATCTCAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAATAAAATGAGCATGCGGGCG
1 GATCT-AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCG
10349494 CTCAGTCGGC
Statistics
Matches: 687, Mismatches: 74, Indels: 27
0.87 0.09 0.03
Matches are distributed among these distances:
706 41 0.06
709 58 0.08
710 209 0.30
711 213 0.31
712 43 0.06
713 1 0.00
714 18 0.03
715 103 0.15
716 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (705 bp):
GATCTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGGGCGGGCA
CTACGACAGCCAGAGAGACGGGATGCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTACAAGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTT
AAGCCTTCACATGAAGTTTCATGGCAAGATCAATCGTTTTCTATTTTTCACGATTTTCAAAACTT
TTTACAGTTCAGGATTTTTTAAAATATTTTCGAAAGGAGTTTTGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTACTAGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAAGGGGCCAATATA
AGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGG
AACCCCAACACCGCCGGTCAGGTTCTGATGATGCTCCGACAATGGTGCCCGGCGAAGAAAAATAA
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCTGTCCGGTCC
Found at i:10350930 original size:14 final size:11
Alignment explanation
Indices: 10350898--10350923 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10350888 TGATCAGGTT
10350898 CTCCGACGATG
1 CTCCGACGATG
10350909 CTCCGACGATG
1 CTCCGACGATG
10350920 CTCC
1 CTCC
10350924 CCCGACGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:10351335 original size:709 final size:697
Alignment explanation
Indices: 10349565--10351745 Score: 2903
Period size: 709 Copynumber: 3.1 Consensus size: 697
10349555 CTACCGATCT
* ** * ** * *
10349565 TGCTGCCACAACCCTCGGTTCGATCTAATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAA
1 TGCTGCCACAACCCTCGATAGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
10349630 CCGACGAAATCAGCG-GGCGGGCGGGCGGGCAATGTGGCGGCCAGAGAGACAGGATGCGCAAGCC
66 CCGACGAAATGAGCGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
10349694 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAGTGCCATTT
131 GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAATGCCATTT
*
10349759 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAA
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
* *
10349824 TCGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAATATTTTCGA
261 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCG-
* * * *
10349888 AAGGAGTTTTTCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAAT
325 AAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAA
* *
10349953 TCAGCTAAAAACTCGATGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
390 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
10350018 AATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCT
455 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
10350083 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGAG
520 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-A-
* ** * *
10350148 TGCGCACACCCCCCTGGCCCTTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGGG
583 T--G-ACACCCCACTAACCC-TCCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCTCCGGGG
* * *
10350213 ATGGTGCCCCGGTGAATAAAAATGTGGCACCAGCACATGCTCGAGCCCAACATG
644 ATGCTCCCCCGGTGAATAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATG
* * * * * *
10350267 TGTTGCCACAACCCTCGGTCGGGTCCGATCTTAGACTGGGAATAAATTCCGAATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGATAGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
10350332 CCGACAAAACGAGC-AGGCGGGTGGGCGGGGACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
66 CCGACGAAATGAGCGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
10350396 G-GGATCGAT-AGGCTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGCATGCCAATGCCATT
131 GTGGATCGATAAGG-TGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAATGCCATT
* * * *
10350459 TTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
* ** *
10350524 CTCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
260 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTTTC
* *
10350589 GTAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
324 GAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
10350654 AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAA
388 AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
10350719 ACACTTTAATAGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
10350784 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACAAGCACCCATCACACATCA
518 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
10350849 TG-CA-CGCAC-AACCC-CCGATCGTCGGAACCCCAATGCCATTGATCAGGTTCTCCGACGATGC
583 TGACACCCCACTAACCCTCCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCT-C--CG--G-
* *
10350910 TCCGACGATGCTCCCCCGACG-GAA-AAAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATG
642 ---G--GATGCTCCCCCG--GTGAATAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATG
** * * *
10350971 TGCTGCTGCAACCCTCGATATGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCCTTAGCCAA
1 TGCTGCCACAACCCTCGATAGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
10351036 CCGACGAAATGAGCGGACGGACGGGCGGGTGGGCACTACGCCGGCAAGAGAGACGGGATGCACAA
66 CCGACGAAATGAGC-GA-GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
10351101 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCATATCTTCATCTTTCTACATGCCAATACCA
128 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAATGCCA
*
10351166 TTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
*
10351231 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
258 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
* * * *
10351296 CAGAAGGAGTTTTGGCCCCAAACATGGAAGACGTGATCCTTGTATTTTTTTTGGTATGCACGAAA
323 C-GAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
**
10351361 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCACATGAAAAAAGTGTCCCCATTTC
386 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
10351426 AGGCACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
451 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
10351491 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCGCAT
516 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * *
10351556 CATGAGTGCACACCC-CATCGGCCCTCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTC
581 CATGA---CAC-CCCAC-T-AACCCT-CCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCTC
** * ** * ** *
10351620 CGGCAATGGTGGCCCGGTGAAGAAAAATGTGGCACCAGCACATGGTCGAGCCCAGCATG
639 CGGGGATGCTCCCCCGGTGAATAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATG
* * * * ** * * *
10351679 GGCTACCGCAGCCCTC-AGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
1 TGCTGCCACAACCCTCGA-TAGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
10351743 ACC
65 ACC
10351746 CATGAAACGA
Statistics
Matches: 1294, Mismatches: 146, Indels: 72
0.86 0.10 0.05
Matches are distributed among these distances:
693 34 0.03
694 1 0.00
695 3 0.00
696 5 0.00
697 2 0.00
698 1 0.00
699 1 0.00
700 2 0.00
701 126 0.10
702 160 0.12
703 236 0.18
704 110 0.09
705 3 0.00
706 3 0.00
707 6 0.00
708 146 0.11
709 407 0.31
710 3 0.00
713 2 0.00
714 2 0.00
715 2 0.00
716 2 0.00
717 3 0.00
718 1 0.00
719 33 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (697 bp):
TGCTGCCACAACCCTCGATAGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAGCGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAAGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGA
AGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGA
CACCCCACTAACCCTCCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCTCCGGGGATGCTCC
CCCGGTGAATAAAAATGTGGCACCAGCACATGCCCGAGCCCAACATG
Found at i:10352533 original size:26 final size:26
Alignment explanation
Indices: 10352504--10352556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10352494 CCGGTCTGAT
10352504 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** *
10352530 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
10352556 C
1 C
10352557 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:10353443 original size:26 final size:26
Alignment explanation
Indices: 10353407--10353459 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10353397 CTGGTCCAAT
10353407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10353433 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10353459 C
1 C
10353460 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10353915 original size:899 final size:897
Alignment explanation
Indices: 10352092--10358865 Score: 8246
Period size: 899 Copynumber: 7.5 Consensus size: 897
10352082 GGCAAGACGA
* *
10352092 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTCTGTTGGCATGCACAAAAAAATTCA
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
10352157 GC-CAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACT
66 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
10352221 TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
131 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
10352286 GGTTTGATGAGGGATAGAGGCCCAATATAAGGGCCAAGTGCCAGCACCCATCGTACATCATGTGC
196 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** *
10352351 GCACACCCCCTGGCCCACCCGATCGTCGAAA-CCCAATGCCATCGATCAGGTTCTCCGGCGATG-
261 GCAC-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * * * *
10352414 TCCAGCGATGGTGCCCCGACGAAGAAAAATGTGACACTAGCACATGCCAGAGCCCAGCATGTGCT
325 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * **
10352479 GTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTGGGAAT
390 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * *
10352544 GAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGTGTGCGGG-TGCTCAGCTGGCCAGAAGAGC
455 GAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CGTGCGGGCT-CTCAGCCGGCCAGAGGGGC
* * * * ** *
10352608 GGGATGCGTACA-CC-GAGGATCAGA-CGGGTCCCCCTTTGCGA-GCTGCCAATCCTGCTGTCGT
518 GGGATGCGCA-AGCCTG-GGA-CCGATCGGGTCCCCCTCTGC-ATGCTGCCGATCCTGCTACCGC
** * **
10352669 AACCCTTGGTTCGGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAA
579 AACCCTCAGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * ** * * *
10352733 ACGAGCGGACGGACGGGCAGGTGGGCACTACATCGGCCAGAGAGATGGGATGCGGAAGCCATGGA
643 ACGAGC-G--GG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ***
10352798 TCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATG
704 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
10352863 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAATTTCATGGCAAGACGACTCGTT
769 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
10352928 TTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGGTATTTTTTAAAATTTTTTTGGAAGG
834 TTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
10352992 AGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAAAATC
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTC
* *
10353057 AACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACAC
65 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
10353122 TTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
130 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
10353187 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCG
195 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
10353252 TGCACCCCCCCGGCCCCTCTGATCGTCGAAACCCCAATGTCGTCAGTCAGGTTCTCCGGCGATGC
260 CGCACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * * *
10353317 TCCGGTGATGGTGCCCC-AGGAAAGAAAAATGCGGCACCGGCACATGCCCGAGCCCAGCATGTTC
325 TCCGGCGATGGTGCCCCGACG-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
10353381 TACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
389 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * * *
10353446 TGAAGTCCGTATGCCTAAGTCAACCCACGGAACGGACGTGTGGGCTCTCGGCCAGCCAGAGGCGC
454 TGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GACGTGCGGGCTCTCAGCCGGCCAGAGGGGC
* * * *
10353511 GGGATGCGCAAGCCTGGGACCGATCGGGTCCACCTCTGCATGCTGCCGATCTTGCTGCCACAACC
518 GGGATGCGCAAGCCTGGGACCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACC
* * *
10353576 CTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAACGAG
583 CTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* ** * * *
10353641 CGGGCGGGCAGGCGATCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATTGATAGGG
648 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
10353706 TGGTTGGTGGGTTTAAGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
713 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
10353771 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
778 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
10353836 TCACTATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
843 TCACTATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
10353891 AGTTTTGGCCCCATACTTGGTAGACGTGATCCTTGTATGTTTGTTGGCATGCATAAAAAAAATCA
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
10353956 GCTAAACACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
66 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
10354021 TTAATGGCCACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
131 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* **
10354086 GGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTATTAGCACCCATCGCACATCATGTGT
196 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGT
* * * * * * * *
10354151 GCACACCCCCCCGACCCCCCCAATCGTCGAAACCCCAATACCGTCGGTCAGGTTCTCTGGTGGTG
259 GCGCACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATG
* * * **
10354216 CTCCGGCGTTGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACAAGTTCGAGCCCAGCATGTGC
324 CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
10354281 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAA
389 TGCCGCAA-CC-C--T-C-G---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAA
10354346 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
428 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CGT
* * * * * * * * **
10354411 GCGGGCGCTTAGCTGGCCAGAGGGGCAGGATACGCAAGTC-GGTGATCGGTCGGGTCCCCCTCCA
492 GCGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCTGG-GACCGATCGGGTCCCCCTCTG
* ** * * * * **
10354475 CGTGCTGTGGATCTTGCTACTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCG
556 CATGCTGCCGATCCTGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * *
10354540 TAT-CCTTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGAC
621 TATGCC-TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * * * *
10354604 GAGATGTGCAAGTCGTGGATCAAT-GGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
685 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
10354668 TGCCAATGCCATTTTTATGGCTTGTAAATACATACAATGGTCCCTTAAGCCTTCACGTAAACTTT
750 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
10354733 CATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTAGAAACTTTTTGAGGTTCGGGATTTTT
815 CATGGCAAGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* **
10354798 TAAAAATTTTTT-AGAATT
880 T-AAAATTTTTTCGGAAGG
* *
10354816 AGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCA
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
10354881 GCTAAAAACTCGATGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACT
66 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
10354946 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
131 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
10355011 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
196 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
10355076 GCACACCCCCCGG-CCCACCGATCGT-GGAACCCCAATGCCGCCGGTTAAGTTCTCCGGTGATGC
261 GCAC-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * **
10355139 TCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCGTGCATGTGCT
325 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
10355204 GCTGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAAT
390 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* *
10355269 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCTGTGCT-T-AGCCGGCCAGAGGGGC
455 GAACTCCGTATGCCTAAGTCAACCCACGAAACG-ACGTGC-GGGCTCTCAGCCGGCCAGAGGGGC
* * * * * * * *
10355332 GGGATGCGCAAGCCAGGGA-TGACCGGGTCCCCCTATGCGTGCTGCCGAGCCGGCTACCGTAACC
518 GGGATGCGCAAGCCTGGGACCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACC
* * * *
10355396 CTCAGTCCGGT-TCAATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGATGAAACGA
583 CTCAGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-
* * * * *
10355460 ACGGGCGGACGGGCGGGCGGGCATTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGA
646 A---GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
10355525 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTT
708 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * ** * * *
10355590 GGAAATTCATAAAATGGTCTTTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGATTTGTTTTCT
773 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
10355655 ATTTTTCACGATTTTTGAAACTTTTT-CAGTTCGGGATATTTTAAAAATACTTTTC-AAAGG
838 ATTTTTCACTATTTTTGAAACTTTTTGCGGTTCGGGAT-TTTTTAAAAT-TTTTTCGGAAGG
* * * * *
10355715 ATTTTTGGCCTCAAACTTCGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCA
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
10355780 GCCAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
66 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
10355845 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCGA
131 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
10355910 GGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTACCAGCATCAATCGCACATCATGTGT
196 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
10355975 GCACACACCCCTCGG-CCCCCTGATCGCCGGAACCCTAATACCGCCGGTCAGGTTCTCCGGCGAT
261 GCAC-C-CCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * **
10356039 GCTCCGACGATGGTGCCCCGACGGAGAAAAATACGGCACCAGCACATGCCTAAGCCCAGCATGTG
323 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * *
10356104 CTATCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGA
388 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * *
10356169 ACGAACTCCGTATGCCTAAGTCAACCCACAAAACGGGCGTACGGG-TGCTCAGTCGCCCAAAGGG
453 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GACGTGCGGGCT-CTCAGCCGGCCAGAGGG
* * ** * *
10356233 GTGGGATGCGC-A---T----CAG-TTAGGTCCCCCTCTGCATGCTGCCAATCCTGCTATCGCAA
516 GCGGGATGCGCAAGCCTGGGACCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAA
* * * * **
10356289 CTCTCCGTTCGATCCGATCTTAGA-TGGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAAC
581 CCCTCAGTTCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * * * * * * * *
10356353 AAGTGGACAGGCGGGGGGGTGGGCACTACGCCGGCTAGAGAGATGGGAGGGGCAAGTCGTGGATC
645 --G-AG-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
10356418 GATACGGTGGTATGTGGGTTT-GTGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
706 GATAGGGTGGTAGGTGGGTTTAG-GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
10356482 CTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
770 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
10356547 TCTATTTTTCACGA-TTTTCAAAATGTTTTGCGGTTCGAGATTTTTTAAAATTTTTCCGGAAGG
835 TCTATTTTTCACTATTTTTGAAACT-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * *
10356610 AGTTCTGGCCCCAAACTTGGTAGACGTGATGCTTATATTTTTGTTGGCATGCACAAAAACACTCA
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
10356675 GCTAAAAACTTGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAAGTGT-CCCATTTCAGACAC
66 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACAC
*
10356739 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCG
130 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
10356804 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGTA
195 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG--
* ** * * * *
10356869 TGCACACCCCCCCGGCCCCCCCGATCAACGGAACCCCAATGCTGCCGGTCAGGTTCTTCGACGAT
258 TGCGCACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * * * *
10356934 GCTCCGGCAATAGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCTCGATCCCAGCATGA
323 GCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * **
10356998 GATGCTGCAA-CCT---T----T--G------GTCT--G---G---TCCG-AT-CTTAGACTGCA
387 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
10357037 AATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCAGCCAAAGGG
452 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CGTGCGGGCTCTCAGCCGGCCAGAGGG
* * * * * * *
10357102 GTGGGATGCGTAAG-CTGAGGATCGGTCGAGTCTCCCTCTTCATGCTGCCGATCCTGCTACCGCA
516 GCGGGATGCGCAAGCCTG-GGACCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCA
** * * * * * * *
10357166 ACCCTTGGTTTGGTCCGATCTTAGAATGGGAATGAACTTCGTATGCCCAAGCCAACTGACAAAAA
580 ACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC---GA
* * * * *
10357231 GAACGGAGAGGGCAGGCGGGCGGGCGCTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
642 -AAC-GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
10357296 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAG-GTGCCAATTCCATTTTTATG
705 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATG
* * *
10357360 GCTTGCAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTT
769 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *** *
10357425 TTCTATTTTTCA-TGATTTTTCAAACTTTTAATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG
834 TTCTATTTTTCACT-ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
10357489 AGTTTTGGCCCCAAAATTGGTAGATGTAATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
10357554 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
66 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
10357619 TTAATGGCTAC-GAGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGAGGTGTGAGTTCTTG
131 TTAATGGCTACTG-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
10357683 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTG
195 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * ** *
10357748 CGCACACCCCCCCGGCCCCCCCGATCACCGAAATCAAAATGTCGCCGGTCAGGTTCT-C--CG--
260 CG--CACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
** * *
10357808 G-T-----GATGGTGCCTTGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
323 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
10357867 CTGCCGCAACCCTCGGTCCGGTCCGATCATAAACTGGGAATGAACTCCGTATGCTTAGACTGGGA
388 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * * *
10357932 ATGAACTTCGTATGCCTAAGTCAACCTACGAAATGAGCGTACGGGCACTCGGCCGACCAGAAGGG
453 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CGTGCGGGCTCTCAGCCGGCCAGAGGGG
* * ** * * * *
10357997 CGTGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGTATGCTGCTGATCCTGCTACCGTAAC
517 CGGGATGCGCAAGCCTGGGACCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAAC
* * ** *
10358062 CCTCAG-TCTGGTCCCCTCGAGT-TCTCGAGGTTTG-ATGAACTCCGTATGCCCAAGCCAACCGA
582 CCTCAGTTC-GGT---CT-GA-TCT-TAGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
10358124 CGAAACGAACGGAGAGGGCAGGCGGGCGGGCGCTACGCCGGCCAGAGAGAGGGGATGCGCAAGCC
639 CG--A--AAC-GAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
10358189 ATGGATC-ATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTAG-GTGCCAATGCCATT
699 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATT
* * *
10358252 TTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTAGCAAGACGA
763 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
10358317 CTCATTTTCTATTTTTCA-TGATTTTTCAAACTTTTTGCGGTTCGGGATTTTTTAAAATATTTTC
828 CTCGTTTTCTATTTTTCACT-ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
10358381 GGAAGG
892 GGAAGG
* * *
10358387 AGTTTTGGCCCCAAAATTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
1 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
10358452 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTAATTCAGACACT
66 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
10358517 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
131 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
10358582 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGC
196 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * * *
10358647 GCATACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGATCAAGTTCTCTGACGATGC
261 GCA-CCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * *
10358712 TCCCGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCT
325 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * *
10358777 GCCGTAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGAATGGGAAT
390 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
*
10358842 GAACTCCGTATGCCTAAGCCAACC
455 GAACTCCGTATGCCTAAGTCAACC
10358866 GATAAAATGA
Statistics
Matches: 5103, Mismatches: 614, Indels: 306
0.85 0.10 0.05
Matches are distributed among these distances:
868 56 0.01
869 76 0.01
870 3 0.00
871 3 0.00
872 2 0.00
873 1 0.00
874 2 0.00
876 3 0.00
877 5 0.00
878 93 0.02
879 484 0.09
880 11 0.00
881 2 0.00
882 3 0.00
884 2 0.00
885 1 0.00
886 1 0.00
887 1 0.00
889 1 0.00
891 1 0.00
892 4 0.00
893 3 0.00
894 230 0.05
895 641 0.13
896 100 0.02
897 52 0.01
898 693 0.14
899 770 0.15
900 175 0.03
901 52 0.01
902 406 0.08
903 284 0.06
904 7 0.00
905 1 0.00
906 1 0.00
907 1 0.00
908 133 0.03
909 1 0.00
910 2 0.00
912 2 0.00
913 1 0.00
916 1 0.00
917 1 0.00
918 2 0.00
920 1 0.00
921 3 0.00
922 94 0.02
923 18 0.00
924 10 0.00
925 410 0.08
926 253 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGACGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCCTGGGACCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACCGCAACCCTC
AGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CTATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
Found at i:10354336 original size:26 final size:26
Alignment explanation
Indices: 10354307--10354385 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
10354297 CCGGTCTGAT
10354307 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10354333 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10354359 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10354385 C
1 C
10354386 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.