Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 61 of 121
Found at i:10355258 original size:26 final size:26
Alignment explanation
Indices: 10355229--10355281 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10355219 CCGGTTCGAT
*
10355229 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
10355255 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
10355281 C
1 C
10355282 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:10356167 original size:26 final size:26
Alignment explanation
Indices: 10356131--10356183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10356121 CCGGTCCGAT
* *
10356131 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
10356157 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
10356183 C
1 C
10356184 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:10358838 original size:26 final size:26
Alignment explanation
Indices: 10358802--10358854 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10358792 CCGGTCCGAT
* *
10358802 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10358828 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10358854 C
1 C
10358855 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:10359573 original size:26 final size:26
Alignment explanation
Indices: 10359544--10359596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10359534 TCGGTCCGAT
* *
10359544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGCATG
10359570 CTTAGACTGAGAATGAACTCCGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
10359596 C
1 C
10359597 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:10360475 original size:26 final size:26
Alignment explanation
Indices: 10360446--10360498 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10360436 CTGGTCCAAT
*
10360446 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
10360472 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCATATG
10360498 C
1 C
10360499 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10360658 original size:902 final size:895
Alignment explanation
Indices: 10358828--10361222 Score: 3234
Period size: 902 Copynumber: 2.7 Consensus size: 895
10358818 ACTCTGTATG
* * * *
10358828 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAATGAGTGGGCGGATGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-AGGC-G--GGGCGGG
* * * * * * * *
10358893 CGGGCACTACGCCGACGAAAGAGATGGGATGTGCAAGTCGTGGATCGGTAGGCTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
10358958 TCAGGCACATCTTCATATTTCTGTGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
127 T-AGGCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
10359022 GTCCCTTAAGCATTCACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTT
190 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * **
10359087 GAAACTTTTTGCT-GTTCAGGATTTTT-AAAATTTTTTTGAAAGGA-TTTTTGGCCCCAAACTTG
255 GAAACTTTTT-ATGGTTCGGGATTTTTAAAAATTTTTCAG-AAGGAGTTTTT-GCCCCAAACTTG
* * * *
10359149 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAACATTCAGCTAAAAATTCGAAGTGTA
317 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
10359214 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
382 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCA
*
10359279 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
447 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATGTTTGATGAGGGATAGGG
* *
10359344 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCTCCCAGCCCCC
511 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCC
* * * * * * *
10359408 TGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGACCCGA
576 CGATCGTCGGAACCCCAATGCCGCCGGTCAAGTGCTCCGGCGATGCTCCGACGACGGTGACCCGA
*
10359473 TGAGGAAAAATGCAGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTTCGG
641 -GAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTTCGG
* * *
10359538 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGCATGCCTAAGT
705 TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCGCATGCCGAAGT
* * * * *
10359603 CAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGTCGGGATGCGCAGGCCAGGGAT
770 CAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGCATGCGCAAGCCAGGGAT
* * * * **
10359668 CGATCGGGTCACCGTCTGAGTGCTCTTGATCCTGCTATTGCAACCCTCGATCTGGTCTGAT
835 CGACCGGGTCACCCTCTGAGTGCTCTCGATCCTGCTACTGCAACCCTCGATCTGGTCCAAT
* * *
10359729 CTTAGACTGGGAACGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-AGGC-GG-GG-CGGG
* *
10359794 TGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
10359859 CTAGGCATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGG
127 -TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
10359924 ACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
191 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
10359989 AAAACTTTTTATGGTTCGGGATTTTTAACAAATTTTTCAGAAGGAGTTTTTCCCCCAAACATGGT
256 -AAACTTTTTATGGTTCGGGATTTTTAA-AAATTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGT
*
10360054 AGACGTGATCCTTG-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
319 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
10360118 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACA-TTTAATGGCTACTGGCAGCAAA
384 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
10360182 CCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTCGATGTTTGATAAGGGATAGAGGG
449 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATGTTTGATGAGGGATAGGGGG
10360247 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCG
513 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCG
* * * * *
10360312 ATCGTCGAAACCCCAATGCCGCCGGTCAAGTGCTCCTGCGATGCTCTGGCGACGGTG-CCCCAGC
578 ATCGTCGGAACCCCAATGCCGCCGGTCAAGTGCTCCGGCGATGCTCCGACGACGGTGACCCGAG-
* * * * * **
10360376 AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCGG-TCTGG
642 -AAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTTC-GG
**
10360440 TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-AGGAATGAACTCCTTATGCCGAAG
705 TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGA-GAATGAACTCCGCATGCCGAAG
* *
10360504 TCAACCCACAAAACGAGCGTTCGGGCGCTCAGCCGGCCAGAGGGACGGCATGCGCAAGCCGGGGA
769 TCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGCATGCGCAAGCCAGGGA
* * * * * *
10360569 TCGACCTGGTCCCCCTCT-ACGTGCTGTCGATCCTGTTGCTGCAACCCTCGGTCTGGTCCAAT
834 TCGACCGGGTCACCCTCTGA-GTGCTCTCGATCCTGCTACTGCAACCCTCGATCTGGTCCAAT
* *
10360631 CTTAGACTGCGAATGCACTCCGTATGCCTAAGCCAACCGATGAAAC--GA-GC-GGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGAGGCGGGGCGGGCGGG
*
10360692 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTAGG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAGG
*
10360757 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCT
131 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
10360822 TAAGCCTTCACGTAAAGTTTCATGGCAAGACGACACGTTTTTTATTTTTCGTGATTTTTGAAACT
196 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * * * *
10360887 TTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCACACTTGGTAGACGT
261 TTTTATGGTTCGGGA-TTTTTAAAAATTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGACGT
10360952 GATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
325 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
10361016 TGTG---A--T-------GTGTCCCTATTTCAGACATTTTAATGGCTACTGGCAGCAAACTTGTA
390 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
10361069 AAATCTCAAATGCTCTTTGAGGGGGTGTGATTTCTC-TGGTTTGATTGAGGGATAGGGGGCCACA
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAT-GTTTGA-TGAGGGATAGGGGGCCA-A
** * * **
10361133 TAATAAGCGGCCACTTACCCA-CACCCCATTGCACAACAT-TGCACACACCCCCACCGGGCCCCC
517 T-ATAAG-GGCCAAGTA-CCAGCA-CCCATCGCACATCATGTGTGCACACCCCC-CC-GGCCCCC
10361196 CGGATTCG-CTGGAACCCCAATGCCGCC
576 C-GA-TCGTC-GGAACCCCAATGCCGCC
10361223 NNNNNNNNNN
Statistics
Matches: 1336, Mismatches: 128, Indels: 73
0.87 0.08 0.05
Matches are distributed among these distances:
879 1 0.00
880 24 0.02
881 75 0.06
882 2 0.00
883 5 0.00
884 20 0.01
885 18 0.01
886 8 0.01
887 4 0.00
888 19 0.01
889 1 0.00
892 102 0.08
893 146 0.11
894 66 0.05
895 2 0.00
896 1 0.00
898 2 0.00
899 2 0.00
900 5 0.00
901 364 0.27
902 423 0.32
903 32 0.02
904 14 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGAGGCGGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAGG
CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTATGGTTCGGGATTTTTAAAAATTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCATGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCGATCGTCGG
AACCCCAATGCCGCCGGTCAAGTGCTCCGGCGATGCTCCGACGACGGTGACCCGAGAAGAAAAAT
GCAGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCACAACCCTCGGTTCGGTCCAATCTTAG
ACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCGCATGCCGAAGTCAACCCACAAA
ACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGACGGCATGCGCAAGCCAGGGATCGACCGGGTCA
CCCTCTGAGTGCTCTCGATCCTGCTACTGCAACCCTCGATCTGGTCCAAT
Found at i:10362453 original size:26 final size:26
Alignment explanation
Indices: 10362417--10362469 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10362407 GTTGACTTAG
10362417 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10362443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10362469 G
1 G
10362470 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10365007 original size:903 final size:894
Alignment explanation
Indices: 10362232--10366143 Score: 4569
Period size: 884 Copynumber: 4.4 Consensus size: 894
10362222 NAGTTGCCCG
* * *
10362232 CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * * *
10362297 CGAGGGTTGTGGCAGGAAGATTGGCAGCACGCAAAGGGGGA-TTCGACTGATCCCCGGCTTGCGC
66 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCT-GGCCGATCCCTGGCTTGCGC
* ** * * * *
10362361 ATCCCACCCCTCTGGCCAACTGAGCGCACGCACACTCGTTTTATGGGTTGACTTAGGCATACAGA
130 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * *
10362426 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGAGTTG
195 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * * *
10362491 CGACAACTCATGCTGGGCTCGAGCATGTGCTGGTGCCGCATATTTCTTCACCGGGGCACCATCGT
260 CGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGT
* * ** *
10362556 CGGAGCATCGTCGGAGACCCTAACCG-GTGACATTTTGGTTCCGACGATCGGGGGGCCGAGGGGG
325 CGGAGCATCGTCGGAGAACCTGACCGACCGACA-TTGGGTTCCGACGATCGGGGGGCCG-GGGGG
* *
10362620 TGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATC
388 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
10362685 AAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
453 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCC
* * * *
10362750 ATTAAAGTGTTTGAAACGGGGACACTTTTTTCGAATGGTCACAAAAGCTTGTACACTTCGAGTTT
517 ATTAAAGTGTCTGAAACGGGGACACTTTTTTC-AAAGGTCACAAAATCTTCTACACTTCGAGTTT
* * *
10362815 TTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCA
581 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCA
* * * * *
10362880 AAACTCCTTTCAAAAAAATTTGAAAAAAATCCCT-AACCGTAAAAAGTTTCGAAAATCGTGAAAA
645 AAAATCCTTTCGAAAAAATTT-AAAAAAAT-CCTGAACCATAAAAAGTTTCAAAAATCATGAAAA
* ** * *
10362944 ATAGAAAATGAGTCGTCTTGTTATGGAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
708 ATAGAAAACGAGTCGTCTTGCCATTGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
10363009 ACAAGCCATAAAAATGGCGTTGGCACGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCC
773 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * * *
10363074 TATCGATCCATGGCCTGCGTATCCCTTCTCTCTAGCCGACGTAGTGCCTGCCCGCA-
838 TATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCAC
* * * *
10363130 --CGCTCATTTCGTCGGCTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * **
10363192 CGAGGGTTGTGACAGCAGGATCGGCAGCACACAGAGGAGGACCTGGATGATCCCTGGCTTGCGCA
66 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGCA
* * * *
10363257 TCCCGCCCCTCTGGCTGGCTGAGCGCCCACGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
131 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * * * *
10363322 TTCAATCCCAATCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTAC
196 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* *
10363387 GGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGAGCACCA---T-
261 GGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC
* * * * *
10363448 ----CA---TCGGAGAACCTGAACGGCGGA-ATTGGGGTTCCGGCGATCGAGGGGCCGGGGGGGT
326 GGAGCATCGTCGGAGAACCTGACCGACCGACATT-GGGTTCCGACGATCGGGGGGCC-GGGGGGT
* * *
10363505 GTGCGCACATGATGAGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCC
389 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
10363570 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
454 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCA
* * * * *
10363635 TTAAAGTGTCTGAAACGGGGACATTTTTTTCATATGATCACAAAATCTTCTGCACTTCTAGTTTT
518 TTAAAGTGTCTGAAACGGGGACACTTTTTTCA-AAGGTCACAAAATCTTCTACACTTCGAGTTTT
10363700 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAA
582 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC-AAGTTTGGGGCCAA
* *
10363765 AACTCCTTCCGAAAAAATTTAAAAAAAT-CTCGAACCATAAAAAGTTTCAAAAAT-AGTGAAAAA
646 AAATCCTTTCGAAAAAATTTAAAAAAATCCT-GAACCATAAAAAGTTTCAAAAATCA-TGAAAAA
* * ** *
10363828 TAGAAAACGATTTGTCTTGCCATAAAACTTGACCG-GAAGGCTT-A-GGACCATTGTATGAATTT
709 TAGAAAACGAGTCGTCTTGCCATTGAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
10363890 AC-AGCCATACCAAATGGCATTTGGCATGTAGAAATCATAAAGATGTACCTAAACCCACCTATCC
773 ACAAGCCATA-AAAATGGCA-TTGGCACGTAGAAAT-ATGAAGATGTGCCTAAACCCACCTA-CC
* * * *
10363954 ACACCTATCGAAGCCCACGACTTGCACATCCTGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCC-
834 AC-CCTATC-AA-TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-C-CCCA
*
10364018 G
894 C
* * *
10364019 CCCGCTCGTTTCGTCAGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * *
10364084 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCTGGCCCAACCATGGCTTGCGCA
66 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGCA
* * *
10364149 TCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
131 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * *
10364214 TTCATTCCCAGTCTAAGCGTACGGAATTCATTCCCAGTCTAAGATC-GACCAGACCCAAGGGTTG
196 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCGAGGGTTG
* * * *
10364278 CCGGCAGCCACATGCT-GGCATTGGGCAT-TGCTGGTGCGGCATTTTTTCTTC-TCGGGGC-CCA
260 -CGGCA-ACACATGCTGGGC-TCGAGCATGTGCTGGTGCCGCA-TTTTTCTTCATCGGGGCACCA
*
10364339 -CGCCGGAAGCATTCGTCGGAGTGAACCTGACCGACCG-CATTAGGGTT-CGACGATCGGGGGGC
321 TCGTCGG-AGCA-TCGTCGGA--GAACCTGACCGACCGACATT-GGGTTCCGACGATCGGGGGGC
* *
10364401 CGAGGACGGGGGTGTGCACCACATGAT-TGGCGATGGGCT-CTGGTATATTGG-CCTTATATTGG
381 C---G--GGGGGTGTGC-GCACATGATGT-GCGATGGG-TGCTGGTA-CTTGGCCCTTATATTGG
* * * * *
10364463 CCCCC-ATCCCTCATGAAACCTCAACGAACTCACA-CCCCTTTAAGAGCAGTTAAGA-TAACAGG
437 CCCCCTATCCCTCATCAAACCTCAA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTACAGG
* * *
10364525 -GT-CT-CCA-TAGCCATTAAAGTGTCTGAAACGGGGATACTTTTCTCAAAGGTCACAAAATC-T
501 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAAGGTCACAAAATCTT
* * *
10364585 CTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATTCCAAGAAAAATACAATGGATCACGGT-
566 CTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCAC-GTC
* * **
10364649 TACAAGTTTGGAGCCAAAAAATCCTTTCGAAACAA-TTAAAAAAATCCTGAACTGGTTTAAAAAG
629 TACAAGTTTGGGGCC-AAAAATCCTTTCGAAAAAATTTAAAAAAATCCTGAAC---CATAAAAAG
*
10364713 TTTCCAAAAAATCATGAAAAATAGAAAATTGAGTCGTCTTG-CATTGAACTTCACGTGAAGGCTT
690 TTT-C-AAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATTGAACTTCACGTGAAGGCTT
* * * *
10364777 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-TAA-ATGGAGATAT
752 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
* ** ** * * * **
10364840 GCCTGAACCCACCTGTCACTTTATCAATCCACGGCTTACGCATCCCGTCTTTCTGGCAGGTGTAG
817 GCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
10364905 TGCCCGGCCGCCCACC
882 TGCCC-GCC-CCCA-C
* *
10364921 CGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATTGGACCGGA
1 C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * *
10364986 CCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGACCCCCGGCTTGCGT
65 CCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGC
** * ** * * *
10365051 ATCCCATCCCTTTGGCCGATTGAGCGCCCGTACGCTGGTTTCATGGGTTGACTTAGGCATATGGA
130 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
10365116 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTG
195 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * * *
10365181 -GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTGCTTCATCGGGGCAGCATCGT
260 CGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGT
* *
10365245 CGGAGCATC-ACAGGAGAACCTGACCGA-CGACATTGGGATTCCGATGATCGGAGGGGCCGGGGG
325 CGGAGCATCGTC-GGAGAACCTGACCGACCGACATTGGG-TTCCGACGATCGG-GGGGCCGGGGG
* * * *
10365308 GTGTGCACACGTGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCAT
387 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
10365373 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGC
452 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGC
* * * * *
10365438 CATTAAAGTGTTTGAAAGGGGGACAATTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTT
516 CATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAA-GGTCACAAAATCTTCTACACTTCGAGTT
* * * *
10365503 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTGCCTAGTTTGGGGTC
580 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACAAGTTTGGGGCC
* * ** *
10365568 AAAAATCC-TTCTGAAAAAATTTTAAAACATCCCAAACCATAAAAAGTTTCAAAAATTATGAAAA
644 AAAAATCCTTTC-GAAAAAATTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAA
* * *
10365632 ATAGAAAACGAGTCATCTTGCCA-TGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATT
708 ATAGAAAACGAGTCGTCTTGCCATTG-AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
10365696 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
772 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * *
10365761 CTATCGATCCATGGCTTGTGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCA-
837 CTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCAC
* * * * * **
10365818 --CGTTCGTTTCGTCGGTTGGCTTAAGCTTACGGAGTTCATTCCCAATATAAGATCGGA-CAAAC
1 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * * * * *
10365880 TGAGGGTTGTGACAGCAGGATAGGTAGCACACAGAGGGTGACCCGGACGAT-CCTCAGCTTGCGT
66 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCT-GGCTTGCGC
* ** * *
10365944 ATCCCGCCCCTCTTGTTGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
130 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * * *
10366009 GTTCAATCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
195 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* *
10366074 CGACAACACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGT
260 CGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGT
10366139 CGGAG
325 CGGAG
10366144 AACCTGACCG
Statistics
Matches: 2562, Mismatches: 347, Indels: 214
0.82 0.11 0.07
Matches are distributed among these distances:
880 7 0.00
881 29 0.01
882 15 0.01
883 92 0.04
884 303 0.12
885 9 0.00
886 1 0.00
887 37 0.01
888 1 0.00
889 2 0.00
891 56 0.02
892 174 0.07
893 187 0.07
894 141 0.06
895 263 0.10
896 99 0.04
898 23 0.01
899 110 0.04
900 82 0.03
901 192 0.07
902 91 0.04
903 297 0.12
904 115 0.04
905 19 0.01
906 60 0.02
907 27 0.01
908 28 0.01
909 51 0.02
910 46 0.02
911 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
GGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC
GGAGCATCGTCGGAGAACCTGACCGACCGACATTGGGTTCCGACGATCGGGGGGCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAACGGGGACACTTTTTTCAAAGGTCACAAAATCTTCTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAGTTTGGGGCCAAAAATC
CTTTCGAAAAAATTTAAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATTGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCAC
Found at i:10365137 original size:26 final size:26
Alignment explanation
Indices: 10365107--10365159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10365097 GTTGACTTAG
*
10365107 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10365133 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10365159 G
1 G
10365160 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10366029 original size:26 final size:26
Alignment explanation
Indices: 10366000--10366052 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10365990 GTTGACTTAG
*
10366000 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
* *
10366026 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
10366052 G
1 G
10366053 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Found at i:10366779 original size:26 final size:26
Alignment explanation
Indices: 10366749--10366801 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10366739 GTTGACTTAG
10366749 GCATACAGAGTTCATT-CCTAGTCTAA
1 GCATACAGAGTTCATTGCC-AGTCTAA
*
10366775 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
10366801 G
1 G
10366802 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:10367678 original size:26 final size:26
Alignment explanation
Indices: 10367649--10367701 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10367639 TTTGACTTAG
*
10367649 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10367675 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10367701 G
1 G
10367702 ATCGACCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10369441 original size:26 final size:26
Alignment explanation
Indices: 10369412--10369464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10369402 GTTGACTTTG
*
10369412 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10369438 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10369464 G
1 G
10369465 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10370114 original size:899 final size:889
Alignment explanation
Indices: 10366157--10374599 Score: 9300
Period size: 900 Copynumber: 9.5 Consensus size: 889
10366147 CTGACCGTTG
* *
10366157 TACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
10366222 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCAAGCCAACAAAAAAACAAGGAT
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * * * *
10366287 CACATCTGCTATGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGTAAA
130 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * *
10366352 AAATTTTGAAAATCGA-GAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
195 AAGTTTCGAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
10366416 TAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCACACAGAAAAATGAAGTTG
259 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * *
10366481 CGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGACC-GACGT
324 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGA--T
** * * * * *
10366545 AGTGCCCG-CCGCCCGCCTGCCCGCTCATTTCGTCTGTTAGCTTAGGCATACGGAATTCATTCCC
387 AGTGCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * ** * *
10366609 AGTCTAAGATTGTATCAGACTGAGGGTTAC-GACAGTAGGATCGGTAGCTTGCATAGGGGGACCC
452 AGTCTAAGATCGGACCAGACCGA-GGTTGCAG-CAGCAGGATCGGTAGCACGCAGAAGGGGACCC
* * * * * *
10366673 GATCGATCCCCGGCATGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATG
515 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
*
10366738 GGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAG
580 GGTTGACTTAGGCATACGA-AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * **
10366802 ATCGGACCGGATCGAGGGTTTTTG-CAGCACATGCT-GGCTCGGGCATGTGCTGGTGTCGCATTT
644 ATCGGACCAGACCGAGGG-TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTT
* * * *
10366865 TTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGACATT-GGGTTCCT
707 TTCTTCGTCG-GG-----GCA-C----CATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTC-
* *
10366929 G-CGATCGGGGGGGCCGGGGGGGTGTGCGCAGA-GATGTGCGATGGGTGCTGGTACTTGGCCCTT
760 GACGATC-GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
10366992 ATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGCGATT
824 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
10367057 T
889 T
* * *
10367058 TATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
10367123 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGGCAACAAAAATACAAGGATC
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *** * * * * * *
10367188 ATGTCTACCAAGTTTATCGCCAAAAATCC-TTCTGAAAAAATTTTAAAAAATCCCAAACTGCAAA
131 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCTCGAACCGTAAA
10367252 AAGTTTCGAAAATCATGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
195 AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
10367316 AAGGGGCCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
260 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * *
10367381 ACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCTAGCG-TA
325 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CG-GATA
*** * * * * *
10367445 GTGCCCACCCGTCTGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
388 GTGCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * ** * * * * *
10367510 GTCTAAGATCGAACCGGATCGAGGGTTGTGGTAGCAAGATCGATAGCACGTAGACGGGGACCCGA
453 GTCTAAGATCGGACCAGACCGA-GGTTGCAGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGA
* * * * * * * * * * *
10367575 TCGATCCCCGGCTTACGAATCCTGCCCCTCTGGCCGACGGAACGCCCGAACGCTCGTTCCGTGGT
517 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
* * *
10367640 TTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
582 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
10367705 -GACCCAGACCGAGGGTTGCTACAGCACATGCTGGGCTCGAGCATGTTCTGGTGCCGCATTTTTC
647 GGA-CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTC
* * * * *
10367769 TTCGTCGGGACACCATCGCCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
710 TTCGTCGGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGGCATTAGGGTTTCGACG
* * * *
10367834 ATCGGGGGGTCAGAGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGACCTTATAT
764 ATCGGGGGGTC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
10367899 TGGCCCCCTGTCCCTCATGAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
828 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
10367961 TATAGCTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
10368026 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTATGCATGCCAACAAAAATACAAGGAT
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
10368091 CACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
130 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * *
10368156 AAGTTTTGAAAATCATCAAAAATAGAAAACGA---G---T--CAT----C-T----T---GCCTT
195 AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
10368201 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGT
260 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* *
10368266 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAG
325 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-ATAG
* *
10368331 T--GT--CCACCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
389 TGCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** * * * * ** * *
10368392 TCTAAGATTGGACCGGATTGAGGGTTACGGTAGTAGGATCGACAGCGCGCAGAGGGGGACCC-AG
454 TCTAAGATCGGACCAGACCGA-GGTTGCAGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGA-
** * * *
10368456 CCGATCCCCGGCTTGCGCATCTTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT--G
517 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
*
10368519 -TG---T-----T--G-A---C--T--TAG-----GCATACAGAGTTCATTCCCAGTCTAAGATC
582 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
10368560 AGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGTAGGTGCTGGTGCCGTATTTTTCT
647 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCT
* *
10368625 TCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATT-GGGTTCCTG-CG
711 TCGTCGGGGCACCA---TC---G--TCG---GAGAACCTGACCGGCGGCATTAGGGTTTC-GACG
** *
10368688 ATCGGGGGGGTC--GGGGGTGTGCGCACATGATGTATGATGGGTACTGGTACTTGGCCCTTATAT
764 ATC-GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
10368751 TGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA-ACCCCCTTAAAGAGCATTTGAGATTG
828 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
10368812 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACATTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
10368877 AAATCTTGTTA-ACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGAT
66 AAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* ***** * *
10368941 CACATCTACCAAGTTTGGGGCCAAAACGAGGGATAAAAAAAATTTTAAAAAATC-CCAACCGTAA
130 CACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAA
* * *
10369005 AAAGTTTCCAAAAATCAAGAAAAATAGAAAACGAGTTTGTCTTGCCATGAAACTTCACGTGAAAG
194 AAAGTTT-CGAAAATCATGAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTG-AAG
* * *
10369070 GCTTTAAGGGCCACCATTTTGAATGAATTTACAAGCCATAAAAATGGCATTGGCACACATAAATA
256 GC-TTAAGGG--ACCA--TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * *
10369135 TAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCAGG
316 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * * * *
10369200 CC-GACGTAGTGCCCGCCCGTCCACCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGT
381 CCGGA--TAGTGCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
10369264 TCATTCCCAGTCTAAGATTGGA-TAGAACCGAGTGTTGCAGTAGCAGGATCGGTTGCACACAGAA
444 TCATTCCCAGTCTAAGATCGGACCAG-ACCGAG-GTTGCAGCAGCAGGATCGGTAGCACGCAGAA
* * * * * * *
10369328 GGGGACCCGAGCAATCCCCGGCTTGCGCATCTCGCCCATCTGGCTGGCTGAGCACCCGCATGCTC
507 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
10369393 GTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCA
572 ATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
* * *
10369458 GTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGTC
637 GTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C
* * ** * *
10369523 GTATTTCTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGTGGCATT-GGGTTCCGACGAT
701 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGAT
10369587 CGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
766 CGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * * *
10369652 CCCCCTATGCCTTATCAACCCTCGAGAACTCACACCCCCTCAAAAAGCATTTCAGATTT
831 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
10369711 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
10369776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * ** * * * *
10369841 ACATCTACCTAGTTTGGGGTAAAAACACCTTTTGAAAAAAATTTT-AAAAATCTCGAACTGCAAA
131 ACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * * * *
10369905 AAGTTTCAAAAATCGTTAAAAATAGAAAACGAATCGTCTTGCCATAAAACTTCACGTGAAGGCTT
195 AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * * *
10369970 AAGGGTCCATTGTATAAATTTACAAGCCAAAAAAATGGCATTGCCACGCAGAAATATTAAGATGT
260 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* *
10370035 GCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGTATAG
325 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-ATAG
** * * *
10370100 TGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTCAGGCATACGAAGTTCATTCCCAG
389 TGCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * ** *
10370165 TCTAAGATTGGACCAGACCGAGGGTTG-TGACAGTAGGATCTGTAGCATGCAAAATAGGA-TCGA
454 TCTAAGATCGGACCAGACCGA-GGTTGCAG-CAGCAGGATCGGTAGCACGCAGAAGGGGACCCGA
* * * * * * *
10370228 TCGATCTCCGGCTTGCGGATCCCGCCCCTCTGGCCGGCTAAGCGCCCGTACGCTCGTTTTGTGGG
517 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
* *
10370293 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCAAATCTAAGATC
582 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
10370358 GGACCAGACAGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCACATTTTTCA
647 GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCT
* *
10370423 TCATCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTTCGACGA
711 TCGTCGGGG------CA-C----CATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGA
* * * *
10370488 TCGGGGGGACCGGGGTGGTGTTCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
765 TCGGGGGG-TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
10370553 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGGATTTGAGATTT
829 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
10370614 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
10370679 AAATCTTGAACACTTTGAGTTTTTAGCTGAATTTTTTCGTGCATGCCAA-AAAAATACAAGGATC
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
10370743 ACCTCTACCAAGTTTGGTGCCAAAACTCCTTTCAAAAAAATTTGAAAAAATCTCGAACCGTAAAA
131 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAA
* *
10370808 AGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTA
196 AGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* ** *
10370873 AGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAATTATGAAGATGTG
261 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * *
10370938 CCTAAACCCACATACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAG-CTGACGTAG
326 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGA--TAG
** *
10371002 TGCCCGCCCGACCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTC
389 TGCGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * ** * * *
10371067 TCAGTCTAAGATTGGATCGGACCGAGGATTGTGGCAGCAAGATCGATAGCATGCA-AAGGGTGAC
450 CCAGTCTAAGATCGGACCAGACCGAGG-TTGCAGCAGCAGGATCGGTAGCACGCAGAAGGG-GAC
* * * * * * * * *
10371131 CCAACCGATCCCTGGCTTGCACATCCCACCCCTCTGGCAGG-TAGAGAGCCCACACGCTCGTTTT
513 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCATTTC
*
10371195 GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
577 GTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * **
10371260 AGATCGGACCAAACTGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
642 AGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATT
* * *
10371325 TTTCTTCGCCAGGGCGCCATCTTCGGGGCATCG-CAGGAGAACCTGACCGACGGCATTGGGGTTT
706 TTTCTTCGTC-GGG-G-CA----C----CATCGTC-GGAGAACCTGACCGGCGGCATTAGGGTTT
* * * *
10371389 CGGCGATC--GGGG-C-----GGCGTGCACACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTT
759 CGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
10371446 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGGATTTGAGATT
824 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
10371511 T
889 T
* * *
10371512 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAGTTTTTTCAAATGGTTACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
10371577 AAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* ** *
10371642 ACCTCTACCAAGTTTGGCACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTTGAACCGTAAAA
131 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAA
*
10371707 AGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
196 AGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* ** * *
10371772 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGATACGTAGAATTATGAAGATGTG
261 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* * * *
10371837 CCTAAAGCCACCTACCACCCTATCGATCCAAGGCTTGCACATCCCGTCTCTCTGGCC-GA-CGT-
326 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGATAGTG
* * * * * * *
10371899 AGTGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTCGCTTAGGCATACGAAGTTCATTCTCAATC
391 CGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
10371964 TAAGATCAGACTAGACCGAGGATTGCGGCAGCAAGATCGGTAGCACACAG-AGGGTGACCCAACC
456 TAAGATCGGACCAGACCGAGG-TTGCAGCAGCAGGATCGGTAGCACGCAGAAGGG-GACCCGACC
* * * * * **
10372028 GATCCCTGGCTTGCACATCCCGCCCTTCTGGCCGGCAGAGCGCCCGCATGCTCATTTTATGGGTT
519 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
10372093 GAC-T-----TA-G--G-------C-A---T----A-A-GGAGTTCATTCCCAGTCTAAGATCGG
584 GACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * ** * * *
10372132 ACCGGACTGAGGGTTACGGTAGTACATGCTGGGCTCAGGCATGTGCCGGTGCTGCATTTTTCTTC
649 ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTTCTTC
* * * * *
10372197 GCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTTCGATGATC
713 GTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATC
* * *
10372262 GGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
767 GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
10372327 CCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
832 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
10372385 TACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
10372450 AAATCTTGTACATTTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
*
10372515 ACGTCTACCAAGTTTGGGG-CAAAACTCC-TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAA
131 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * * *
10372578 AAGTTTCGAGAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTT
195 AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
10372643 AAGTGACCATTGTATGAATTTACAAGCTATAAAAATGGTATTGGCATGCAGAAATATGAAGATGT
260 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * * *
10372708 GCCTAAACCCACCTACCACCTTATCAATCCACGACTTGCGCATCCCGTCTCTCTGG--GTGA-CG
325 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GATAG
* * * * * * * * *
10372770 T-AGTGTCGGCCCGCCCGCCCTCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTAATTTCCAG
389 TGCGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * ** * * *
10372834 TCTAAGATCGGACCAGACTGAAGGTTACAGCAACAGGATCGACAGCACGTAG-AGAGTGACCCGG
454 TCTAAGATCGGACCAGACCG-AGGTTGCAGCAGCAGGATCGGTAGCACGCAGAAG-GGGACCCGA
* * * * *
10372898 TCGATCCCCGGCTTGCGCAT-CCGACCCCTATGGCCGGCTGAGCGCCCGTACGATCATTTCGAGG
517 CCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* *
10372962 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
581 GTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** *
10373027 CAAATCAGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
646 CGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTT
* **
10373091 CTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTAGGGTTTCGGT
709 CTTCGTCGGGG------CA-C----CATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGAC
* * * * * ** *
10373156 GATC--GAGG--GGAGGGTTGTGCACACATGATGTGCGATTGGTGCTTTTACTTGGCCCTTAAAT
763 GATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
10373217 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT-AA-AG----T---A---
828 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
10373267 -A-A-----G-T----GT---C-----A------GAAATGGGGACACTTTTTTCAAATGTTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
10373306 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
10373371 ACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAATTTTTAAAAAATC-CTGAACCGTAAA
131 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTC-GAACCGTAAA
* * * * *
10373434 AAGTTTTGAAAATCGTTAAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
195 AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
10373499 AAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGTAGGTAGAAATATGAAGATGT
260 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
* * *
10373564 GCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATTCCGTCTCTCTGTCC--A-ACG
325 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGATA-G
* * * ** *
10373626 T-CGTGCCTGCCGGCCCACTTGCTCGTTTCGTTTGGTTGGCTTAGGCATACGGAGTTCATTCCCA
389 TGCGTGCCCGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
10373690 GTCTAACATCAGACCAGATCGAGGGTTGCTGCAGCAGGAAT-GGTAGCACGC-GAAGGTGGACTC
453 GTCTAAGATCGGACCAGACCGA-GGTTGCAGCAGCAGG-ATCGGTAGCACGCAGAAGG-GGACCC
* * * * * *
10373753 GACCGATCTCGGGCTTGAGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGATCATTTCGGG
515 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG
* *
10373818 GGTTGACTTTGGCATATGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
580 GGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * * *
10373883 TTGGACGGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCTTGTTCTGGTGCTGAATTTTT
645 TCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTT
10373948 CTTCGTCGGGGCACCATCGCTTGAGCATCACCGGAGAACCTGACCGGCGGCATT-GAGGTTTCGA
709 CTTCGTCGGGGCACCAT--C----G--T---CGGAGAACCTGACCGGCGGCATTAG-GGTTTCGA
* *
10374012 CGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTAT
762 CGATC-GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
** * *
10374077 ATTGGCCCCCTATCCCTCATCAAGGCTCGAGAACACACACCCCCTTGAAGAGCATTTGAGATTT
826 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
10374141 TACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
1 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
10374206 AAATCTTGTACCCTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATC
66 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* ** * * *
10374271 ACGTCTACCTAGTTT-GGGATAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAA
131 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCTCGAACCGTAAA
* *
10374334 AAGTTTC-AGAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCT
195 AAGTTTCGA-AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * * *
10374398 TAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGTACTGGCATGCATAAATATGAAGATG
259 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * *
10374463 TGCCTAAACGCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTA
324 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GGATA
*
10374528 GTGC-TCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCC
388 GTGCGT-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
*
10374592 ATTCTAAG
452 AGTCTAAG
10374600 CATACAAAGT
Statistics
Matches: 6488, Mismatches: 760, Indels: 586
0.83 0.10 0.07
Matches are distributed among these distances:
846 3 0.00
848 1 0.00
850 74 0.01
851 153 0.02
852 80 0.01
854 15 0.00
855 138 0.02
856 331 0.05
857 294 0.05
858 8 0.00
860 9 0.00
862 88 0.01
863 3 0.00
864 7 0.00
865 121 0.02
866 2 0.00
867 7 0.00
868 3 0.00
869 1 0.00
870 3 0.00
871 8 0.00
872 358 0.06
873 249 0.04
874 9 0.00
875 4 0.00
876 5 0.00
877 1 0.00
878 113 0.02
879 1 0.00
880 2 0.00
881 158 0.02
882 152 0.02
883 2 0.00
884 3 0.00
885 129 0.02
886 2 0.00
888 4 0.00
889 1 0.00
890 183 0.03
891 365 0.06
892 8 0.00
893 10 0.00
894 91 0.01
895 15 0.00
896 24 0.00
897 59 0.01
898 444 0.07
899 623 0.10
900 630 0.10
901 202 0.03
902 280 0.04
903 438 0.07
904 135 0.02
905 21 0.00
906 95 0.01
907 220 0.03
908 100 0.02
909 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (889 bp):
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAA
AGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGATAGTG
CGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCGGACCAGACCGAGGTTGCAGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGACCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
CTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTC
GGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGGGTCGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
Found at i:10370331 original size:26 final size:26
Alignment explanation
Indices: 10370302--10370354 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10370292 GTTGACTTAG
* *
10370302 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCAAATCTAA
*
10370328 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGAAGTTCATTCCAAATCTAA
10370354 G
1 G
10370355 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAATCTAA
Found at i:10371246 original size:26 final size:26
Alignment explanation
Indices: 10371209--10371261 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10371199 GTTGACTTAG
10371209 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10371235 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10371261 G
1 G
10371262 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10371622 original size:898 final size:897
Alignment explanation
Indices: 10368530--10374599 Score: 7230
Period size: 899 Copynumber: 6.8 Consensus size: 897
10368520 GTTGACTTAG
* * *
10368530 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
10368595 CTCGGGTAGGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * **
10368660 ACCTGACCGACGGCATT-GGGTTCCTG-CGATCGGGGGGGTCGGGGGTGTGCGCACATGATGTAT
131 ACCTGACCGGCGGCATTGGGGTTTC-GACGATC--GGGGGTC--GGGTGTGCGCACATGATGTGC
* * *
10368723 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA-A
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
10368787 CCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
10368852 GGGACACATTTTTCAAATGGTCACAAAATCTTGTTA-ACTTCGAGTTTTTAGCTGAATGTTTTTA
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **** *
10368916 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGAGGGATAAAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC--TCCTTCAAAAA
* ** * *
10368981 AATTTTAAAAAATC-CCAACCGTAAAAAGTTTCCAAAAATCAAGAAAAATAGAAAACGAGTTTGT
448 AATTTTAAAAAATCTCGAACCGTAAAAAGTTT-TGAAAATCATGAAAAATAGAAAACGAG-TCGT
*
10369045 CTTGCCATGAAACTTCACGTGAAAGGCTTTAAGGGCCACCATTTTGAATGAATTTACAAGCCATA
511 CTTGCCATGAAACTTCACGTG-AAGGC-TTAAGGG--ACCA--TTGTATGAATTTACAAGCCATA
** * *
10369110 AAAATGGCATTGGCACACATAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
570 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
10369175 CGGCTTGCGCATCCCATCTCTCAGGCCGACGTAGTGCCCGCCCGTCCACCCACCCGCTCATTTCA
635 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * *
10369240 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA-TAGAACCGAGTGTTGCAG
700 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAG-GTTGCGG
* * * * * * * *
10369304 TAGCAGGATCGGTTGCACACAGAAGGG-GACCCGAGCAATCCCCGGCTTGCGCATCTCGCCCATC
763 CAGCAGGATCGGTAGCACGCA-AAGGGTGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTC
* * * * * * *
10369368 TGGCTGGCT-GAGCACCCGCATGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCTA
827 TGGCCGGCTAGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
10369432 GTCTAA
892 GTCTAA
* * ** *
10369438 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
10369503 CTCGGGCATGTGCTGGTGTCGTATTTCTCTTCACCGGGG------CA-C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* *
10369557 ACCTGACCGGTGGCATT-GGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGTC----GGGTGTGCGCACATGATGTGC
* * *
10369621 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTTATCAACCCTCGAGAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
10369686 CCCCCTCAAAAAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATT
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
10369751 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * *
10369816 GCATGCCAACAAAAATACAAGGATCACATCTACCTAGTTTGGGGTAAAAACACCTTTTGAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC--TTCAAAAAA
* * ** * * *
10369881 ATTTT-AAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAATCGTCTT
449 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
10369945 GCCATAAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATAAATTTACAAGCCAAAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
10370010 TTGCCACGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGTG
579 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*** *
10370075 CATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
644 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
10370140 TCAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGACAGTAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGGCAGCAGGATC
* * ** * * * **
10370205 TGTAGCATGCAAAATAG-GA-TCGATCGATCTCCGGCTTGCGGATCCCGCCCCTCTGGCCGGCTA
773 GGTAGCACGC-AAAGGGTGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTA
* * * *
10370268 -AGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
837 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
10370328 GCATACGGAGTTCATTCCAAATCTAAGATCGGACCAGACAGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
10370393 CTCGAGCATGTGCTAGTGCCACATTTTTCATCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * *
10370458 ACCTGACCGACGGCATTAGGGTTTCGACGATCGGGGGGACCGGGGTGGTGTTCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGG-TC-GGGT-GTG--CGCACATGATGTG
*
10370523 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
10370588 ACCCCTTTAAAGAGGATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
10370653 GGGGACAGTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAGTTTTTAGCTGAATTTTTTCG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
10370718 TGCATGCCAA-AAAAATACAAGGATCACCTCTACCAAGTTTGGTGCCAAAACTCCTTTCAAAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAAA
*
10370782 ATTTGAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
449 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
10370847 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
10370912 TTGGCACATAGAATTATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTGCG
579 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
10370977 CATCCCGTCTCTCTAGCTGACGTAGTGCCCGCCCGACCGTCCGCCCGCCCGCTCGTTTCGTCGGT
644 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
10371042 TGGCTTAGGCATACGGAGTTTATTCTCAGTCTAAGATTGGATCGGACCGAGGATTGTGGCAGCAA
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG-TTGCGGCAGCAG
* * * * * *
10371107 GATCGATAGCATGCAAAGGGTGACCCAACCGATCCCTGGCTTGCACATCCCACCCCTCTGGCAGG
769 GATCGGTAGCACGCAAAGGGTGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGG
* * * *
10371172 -TAGAGAGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
834 CTAGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
10371235 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
10371300 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCGCCATCTTCGGGGCATCG-CAGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTC-GGAG
* * * * *
10371364 AACCTGACCGACGGCATTGGGGTTTCGGCGATC-GGGG-C-GGCGTGCACACAAGATGTGCGATG
130 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGTCGGGTGTGCGCACATGATGTGCGATG
10371426 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
10371491 CTTAAAAAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
10371556 CAGTTTTTTCAAATGGTTACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * **
10371621 GCCAAAAAAAATACAAGGATCACCTCTACCAAGTTTGGCACCAAAACTCCTTTCAAAAAAATTTT
390 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAAAATTTT
*
10371686 AAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
454 AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* **
10371751 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGAT
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
10371816 ACGTAGAATTATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCAAGGCTTGCACATCC
584 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
10371881 CGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTCGCTTAGG
649 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
10371942 CATACGAAGTTCATTCTCAATCTAAGATCAGACTAGACCGAGGATTGCGGCAGCAAGATCGGTAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG-TTGCGGCAGCAGGATCGGTAG
* * * * *
10372007 CACACAGAGGGTGACCCAACCGATCCCTGGCTTGCACATCCCGCCCTTCTGGCCGGC-AGAGCGC
778 CACGCAAAGGGTGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTAGAGCGC
* **
10372071 CCGCATGCTCATTTTATGGGTTGAC-T-----TA-G--G--------CA---T--
843 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
10372104 --A-A-GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGTAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * **
10372165 CTCAGGCATGTGCCGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * *
10372230 ACCTGATCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATC--GGGGGTC---GGGTGTGCGCACATGATGTGC
*
10372295 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
10372360 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
10372425 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGCTAAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
10372490 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAA
* * * *
10372554 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAGAATCGTGAAAAATAGAAAATGAGTCGTCTTG
450 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
10372619 CCATGAAACTTCATGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCTATAAAAATGGTAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
10372684 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCAATCCACGACTTGCGC
580 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * * *
10372749 ATCCCGTCTCTCTGGGTGACGTAGTG-TCG---GCCCGCCCGCCCTCTCATTTCATCGGTTGGCT
645 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
10372810 TAGGCATACAGAGTTAATTTCCAGTCTAAGATCGGACCAGACTGAAGGTTACAGCAACAGGATCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGTTGCGGCAGCAGGATCG
** * * * ** * *
10372875 ACAGCACGTAGAGAGTGACCCGGTCGATCCCCGGCTTGCGCAT-CCGACCCCTATGGCCGGCT-G
774 GTAGCACGCAAAGGGTGACCCGACCGATCCCCGGCTTGCACATCCCG-CCCCTCTGGCCGGCTAG
* * * *
10372938 AGCGCCCGTACGATCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
** * *
10372998 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
10373063 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * ** * *
10373128 ACCTGATCGGCGGCATTAGGGTTTCGGTGATCGAGGGG-AGGGTTGTGCACACATGATGTGCGAT
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCG-GGGGTCGGG-TGTGCGCACATGATGTGCGAT
* ** * *
10373192 TGGTGCTTTTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
10373257 CCTT-AA-AG----T---A----A-A-----G-T----GT---C-----A------GAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
10373284 ACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
10373349 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAATTTTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTT
* * * *
10373414 AAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATCGTTAAAAATAGAGAACGAGTCATCTTGCCA
454 AAAAAATCTC-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
10373478 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
10373543 TAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATT
583 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * ** *
10373608 CCGTCTCTCTGTCCAACGTCGTGCCTG-CCG---GCCCACTTGCTCGTTTCGTTTGGTTGGCTTA
648 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTA
* * * *
10373669 GGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGATCGAGGGTTGCTGCAGCAGGAAT-GG
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGGCAGCAGG-ATCGG
* * * *
10373733 TAGCACGCGAA-GGTGGACTCGACCGATCTCGGGCTTG-AGCATCCCGCCCCTCTGGCCGGCTA-
775 TAGCACGCAAAGGGT-GACCCGACCGATCCCCGGCTTGCA-CATCCCGCCCCTCTGGCCGGCTAG
* * * * *
10373795 AGCGCCCGCACGATCATTTCGGGGGTTGACTTTGGCATATGAAGTTCATTCCTAGTCTAA
838 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** *
10373855 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * **
10373920 CTCGAGCTTGTTCTGGTGCTGAATTTTTCTTCGTCGGGGCACCATC-GCTTGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATCGTCGGAG
*
10373984 AACCTGACCGGCGGCATTGAGGTTTCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTTCGACGATC--GGGGGTC----GGGTGTGCGCACATGATGT
* * ** *
10374049 GTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGGCTCGAGAACACA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
10374114 CACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
10374179 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTTGATTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
10374244 GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCTAGTTT-GGGATAAAACTCCTTCTGAAAA
384 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAA
* * * *
10374308 AATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAGAAATCATGAAAAATAGAAAACGAGTCATC
448 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGA-AAATCATGAAAAATAGAAAACGAGTCGTC
* *
10374372 TTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
10374437 TACTGGCATGCATAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCATGGCTTG
577 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** *
10374502 CGCATCCCGTCTCTCTGGCCGGGGTAGTGCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
642 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
10374567 GCTTAGGCTTACGGAGTTCATTCCCATTCTAAG
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
10374600 CATACAAAGT
Statistics
Matches: 4483, Mismatches: 530, Indels: 303
0.84 0.10 0.06
Matches are distributed among these distances:
855 1 0.00
856 327 0.07
857 306 0.07
858 9 0.00
859 2 0.00
862 80 0.02
863 5 0.00
864 2 0.00
865 140 0.03
866 2 0.00
867 2 0.00
868 5 0.00
869 1 0.00
870 2 0.00
871 8 0.00
872 358 0.08
873 246 0.05
874 3 0.00
875 3 0.00
876 1 0.00
878 2 0.00
879 1 0.00
880 1 0.00
881 3 0.00
882 2 0.00
884 1 0.00
885 3 0.00
886 2 0.00
888 1 0.00
889 2 0.00
890 179 0.04
891 366 0.08
892 7 0.00
893 9 0.00
894 86 0.02
895 12 0.00
896 18 0.00
897 66 0.01
898 456 0.10
899 467 0.10
900 311 0.07
901 50 0.01
902 254 0.06
903 240 0.05
904 16 0.00
905 10 0.00
906 95 0.02
907 228 0.05
908 92 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGTCGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAA
AAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTGCGGCAGCAGGATCGGTAGCAC
GCAAAGGGTGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTAGAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:10373001 original size:26 final size:26
Alignment explanation
Indices: 10372972--10373024 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10372962 GTTGACTTAG
10372972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10372998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10373024 G
1 G
10373025 ATCAAATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10375226 original size:745 final size:743
Alignment explanation
Indices: 10373837--10375344 Score: 2175
Period size: 745 Copynumber: 2.0 Consensus size: 743
10373827 TGGCATATGA
* * ** ** **
10373837 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGGACTGAGGGTT
1 AGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * * * *
10373902 GCGGCAGCACATGCTGGGCTCGAGCTTGTTCTGGTGCTGAATTTTTCTTCGTCGGGGCACCATCG
66 ACGGCAGCACATACTAGGCTCGAGCATGTGCTGGTGCTCAATTTTTCTTCGTCGGGGCACCATCA
** ** * * * * * *
10373967 CTTGAGCATCACCGGAGAACCTGACCGGCGGCATTGAGGTTTCGACGATCGGGGGGGTCGGGGGG
131 CCGGAGCATCACCAAAAAACATGACC-GCGACATTGAGGTTCCAACGATCGGGGGGGCCGGGGGG
* * * *
10374032 GTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCAT
195 GTGTGCGCACATGATGTGTGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCACTCAG
** * *
10374097 CAAGGCTCGAGAACACACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
260 CAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
* * *
10374162 AATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTTGATTT
325 AATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
* *
10374227 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCTAGTTTGGGATA
390 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGATA
* *
10374292 AAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAGAAATCATGAAAAAT
455 AAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAGAAATCATGAAAAAT
10374357 AGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAC
520 AGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAC
* * *
10374422 AAGCCATAAAAATGGTACTGGCATGCATAAATATGAAGATGTGCCTAAACGCACCTACCACCCTA
585 AAGCCATAAAAATGGCACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
10374487 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCTCGCCCGCCCGCCCGCCCGC
650 TCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGAGCCCGCCCGCCCGCCCGCCCAC
* * * *
10374552 TCGTTTCGTCGGTTGGCTTAGGCTTACGG
715 TCATTTCATCGGTTGGCTTAGGCATACCG
*
10374581 AGTTCATTCCCATTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
1 AGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
*
10374646 ACGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGC-CACATTTTTCTTCGTCGGGGCACCATC
66 ACGGCAGCACATACTAGGCTCGAGCATGTGCTGGTGCTCA-ATTTTTCTTCGTCGGGGCACCATC
*
10374710 ACCGGAGCATCACCAAAAAACATGA-C-CGACATTGGGGTTCCAACGATCGGGGGGGCCGGAGGG
130 ACCGGAGCATCACCAAAAAACATGACCGCGACATTGAGGTTCCAACGATCGGGGGGGCC-G-GGG
** *
10374773 GGGCCTGTGCGCATGTGATTTGTGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCAC
193 GGG--TGTGCGCACATGATGTGTGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCAC
* *
10374838 TCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAG
256 TCAGCAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
* *
10374903 TGGCCAA-TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTT
321 TAG-CAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
*
10374967 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
385 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTG
* * * **
10375032 GG-TCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTT-TGAAAATTG
450 GGAT--AAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAG-AAATCA
* * *
10375095 TGAAAAATAGAAAAC-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
512 TGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAT
*
10375159 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
577 GAATTTACAAGCCATAAAAATGGCACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
10375224 CCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTATGGTCGGCGTAGAGCCCGCCCGTCTGC
642 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGAGCCCGCCCGCCCGC
10375289 CCGCCCACTCATTTCATCGGTTGGCTTAGGCATACCG
707 CCGCCCACTCATTTCATCGGTTGGCTTAGGCATACCG
*
10375326 AGTTCATTTCCAATCTAAG
1 AGTTCATTCCCAATCTAAG
10375345 ATCGGACTGG
Statistics
Matches: 677, Mismatches: 78, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
741 26 0.04
742 1 0.00
743 8 0.01
744 131 0.19
745 444 0.66
746 67 0.10
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (743 bp):
AGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
ACGGCAGCACATACTAGGCTCGAGCATGTGCTGGTGCTCAATTTTTCTTCGTCGGGGCACCATCA
CCGGAGCATCACCAAAAAACATGACCGCGACATTGAGGTTCCAACGATCGGGGGGGCCGGGGGGG
TGTGCGCACATGATGTGTGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCACTCAGC
AAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCA
ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGATAA
AACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAGAAATCATGAAAAATA
GAAAACGAGTCATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACA
AGCCATAAAAATGGCACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGGCGTAGAGCCCGCCCGCCCGCCCGCCCACT
CATTTCATCGGTTGGCTTAGGCATACCG
Found at i:10375515 original size:26 final size:26
Alignment explanation
Indices: 10375479--10375529 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10375469 TGACTTAGCT
10375479 ATACGGAGTTCATTCCAAGTCTAAGC
1 ATACGGAGTTCATTCCAAGTCTAAGC
* *
10375505 ATACGGAGTTCTTTCCCAGTCTAAG
1 ATACGGAGTTCATTCCAAGTCTAAG
10375530 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTCTAAGC
Found at i:10378934 original size:587 final size:587
Alignment explanation
Indices: 10377822--10379346 Score: 2555
Period size: 587 Copynumber: 2.6 Consensus size: 587
10377812 ACGTGAAGGC
10377822 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
*
10377887 GTGCCTAAACCCACCTACCACCCAATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCAGCGT
66 GCGCCTAAACCCACCTACCACCCAATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCAGCGT
10377952 AGTGCCCGTCTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAAGC
131 AGTGCCCGTCTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAAGC
*
10378017 TAAGATCAGATTGGACCAAGGGTTACGATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACGG
196 TAAGATCAGATTGGACCAAGGGTTACGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACGG
* * *
10378082 ATCCTCGGCTTAGGCATCCCGCCCTTCTGGCCGGTTGAGCGCCTGCACGCTCATTTCGTGGGTTG
261 ATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
*
10378147 ACTTAGGCATACGGGGTTCATTTCTAGTCTCAGAATACAGAGTTCATTCCCAGTCAAAGATTGAA
326 ACTTAGGCATACGGGGTTCATTTCTAGTCTCAGAATACAGAGTTCATTCCCAGTCAAAGATCGAA
* *
10378212 CCGGACCATGGGTTATGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCA
391 CCGGACCATGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGTCACATTTTTCTTCA
*
10378277 CCGGGGCACCATCGCCGGAGCATCGACGGAGAACCTGACCGACGGCATTGGGGTTCGGACGATCG
456 CCGGGGCACCATCGCCGGAGCATCGACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
*
10378342 GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGCATAAAAATGAGGGGGTGTGCGCACAG
521 GGGGGGTCGGGGGAGTGTGCGCACATGATGTGCGATGGCATAAAAATGAGGGGGTGTGCGCACAG
10378407 GA
586 GA
10378409 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
10378474 GCGCCTAAACCCACCTACCACCCAATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCAGCGT
66 GCGCCTAAACCCACCTACCACCCAATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCAGCGT
10378539 AGTGCCCGTCTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAAGC
131 AGTGCCCGTCTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAAGC
*
10378604 TAAGATCAGATTGGACCAAAGGTTACGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACGG
196 TAAGATCAGATTGGACCAAGGGTTACGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACGG
* *
10378669 ATCCTCGACTTACGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTG
261 ATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
10378734 ACTTAGGCATACGGGGTTCATTTCTAGTCTCAGAATACAGAGTTCATTCCCAGTCAAAGATCGAA
326 ACTTAGGCATACGGGGTTCATTTCTAGTCTCAGAATACAGAGTTCATTCCCAGTCAAAGATCGAA
10378799 CCGGACCATGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGTCACATTTTTCTTCA
391 CCGGACCATGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGTCACATTTTTCTTCA
* *
10378864 TCGGGGCACCATCGCCGGAGCATCGGCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
456 CCGGGGCACCATCGCCGGAGCATCGACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
10378929 GGGGGGTCGGGGGAGTGTGCGCACATGATGTGCGATGGCATAAAAATGAGGGGGTGTGCGCACAG
521 GGGGGGTCGGGGGAGTGTGCGCACATGATGTGCGATGGCATAAAAATGAGGGGGTGTGCGCACAG
10378994 GA
586 GA
10378996 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * * *
10379061 GCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGT
66 GCGCCTAAACCCACCTACCACCCAATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCAGCGT
* * * * * * *
10379126 AGTTCCCGCCCGTCCGCCCGCTCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
131 AG-T---GCCCGTCTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCC
* * ** * * * ** * **
10379191 AATCCAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATGGGCAGCATGCAGAGAAGGACCCG
192 AAGCTAAGATCAGATTGGACCAAGGGTTACGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCG
* * * * * * * * * *
10379256 GCCGATCCTCGGCTTGCGAATCCCGCCCCTCTGGTCGGCTGAGCACCCGCATGTTCGTTTCGTGG
257 ACGGATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* *
10379321 ATTGACTTAGGCATACGGAGTTCATT
322 GTTGACTTAGGCATACGGGGTTCATT
10379347 CGCAGTCTAA
Statistics
Matches: 880, Mismatches: 54, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
587 699 0.79
588 1 0.00
591 180 0.20
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (587 bp):
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
GCGCCTAAACCCACCTACCACCCAATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCAGCGT
AGTGCCCGTCTGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAAGC
TAAGATCAGATTGGACCAAGGGTTACGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACGG
ATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
ACTTAGGCATACGGGGTTCATTTCTAGTCTCAGAATACAGAGTTCATTCCCAGTCAAAGATCGAA
CCGGACCATGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGTCACATTTTTCTTCA
CCGGGGCACCATCGCCGGAGCATCGACGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
GGGGGGTCGGGGGAGTGTGCGCACATGATGTGCGATGGCATAAAAATGAGGGGGTGTGCGCACAG
GA
Found at i:10380702 original size:878 final size:877
Alignment explanation
Indices: 10378996--10386397 Score: 9188
Period size: 878 Copynumber: 8.4 Consensus size: 877
10378986 GCGCACAGGA
*
10378996 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
** * *
10379061 GCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * * * *
10379126 AGTTCCCGCCCGTCCGCCCGCTCACTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
131 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * *
10379191 AATCCAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATGGGCAGCATGCAG-AGAAGGACCC
196 AGTCTAAGATCAGA-CGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG-GGGACCC
* * * * * * *
10379255 GGCCGATCCTCGGCTTGCGAATCCCGCCCCTCTGGTCGGCTGAGCACCCGCATGTTCGTTTCGTG
259 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * * * *
10379320 GATTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGA-TCAGACCGGACCAAGTGTTGCGGTA
324 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACCGAGGGTTGCGGCA
* * * * ** * **
10379384 GCACATGCTGGGC-TCAGGCATGTGCTAGTGTCGCATTTTTCTTCATCGGGGCACCATCATCAAA
389 GCACATGCTGGGCTTGA-GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGA
* * * * * *
10379448 GCATCGTCGGAGAACCTGACTGGCGGCTTTAGGGTTTCGGCAATCTG-GGGGGCCTGGGGGAGTG
453 GCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATC-GAGGGGGCC-GGGGG-GTG
* * *
10379512 TGCGCACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
515 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
10379577 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCAT
580 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
10379642 TAAAGTGTCTAAAATGTGAACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
645 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
** *
10379707 AATTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAA
710 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
10379772 ACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTCAAAAATCATGAAAAATAG
775 ACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
10379836 AAAACGAGTCATCTTGCCATGAAATTTCACATGAAGGA
840 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
10379874 TTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
* * * *
10379939 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGGCAT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * *
10380004 AGTGCCCACCCGTCTGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
131 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * *
10380069 AGTCCAATATCAGACTGAACTGAGGGTTGCGGCAGCAGGATGGGCAACATGCAAAAAGGGACCCG
196 AGTCTAAGATCAGAC-GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCG
* * * * ** *
10380134 GCCGATCCCCGGTTTGCGAATCCCGCCCCTCTGGCCGACTGAGCGCCCATATGCTCGTTTCGTGG
260 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * * * *
10380199 GTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAATATTGAG-TCAGACTGAGAGTTGTGACAG
325 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACCGAGGGTTGCGGCAG
* * *
10380263 CACATGCTGGGCTTGAGCATGTGTTGGTGCCACATTTTTCATT-GTCGGGGCACAATCGTCGGAG
390 CACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTC-TTCGCCGGGGCACCATCGTCGGAG
** * ** * * *
10380327 CATCACCGAAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGAGCCAAGGGGGTGTGC
454 CATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGC
*
10380392 ACACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACC
518 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
10380457 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
583 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
10380522 AGTGTCTGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTTTAGC
648 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
10380587 TGAATTTTTTTGTGCGTGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAT
713 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
10380652 CCTTCCAAAAATATTTTAAAAAATCCCAAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAA
778 CCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
10380717 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
843 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
10380752 TTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
* * * *
10380817 GTGCCTAAACCCACCTACCAGCCTATCGATCCGCGGCTTGAGCATCCCGTCTCTTTGGCCGACGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
10380882 AGTGCCCGCCCGCCTGCCTGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTTATTCCC
131 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * * *
10380947 AGTCTAAGATC-GAATCGGATAGAGGGTTGTGGCAGCAGGATCGACATCACGCAGAGGGGGACCC
196 AGTCTAAGATCAG-A-CGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCC
* * * *
10381011 GACCGATCCCCGGCTTGTGCTTCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTG
259 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * ** ** * * **
10381076 GGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACCGAGTTCATTCCCA--ATATAA
324 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--TGAGACCAGACCGAGGGT-TGC
* * * * ** * *
10381139 GATCAG-ATCGGA-CCGAGGGTTGTGGCAGCACATGCTGGCGCCACATTTTTCTTCACCGGGGCA
385 G-GCAGCA-C--ATGC-TGGGCT-T-G-AGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCA
* * * * *
10381202 CCATCATCGGAGCATCATCGGAGAACCTAACCGACGGCATTATGGTTCCGACGATCGGGGGGGCC
442 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCC
* * * *
10381267 AGGGGGTGTGCGCACATGATGTGCGATGGGTG-TGGTACTTGGCCCTTATATTGGCCCCTTATCT
507 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
10381331 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
572 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
10381396 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTT
637 GTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTT
10381461 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAGAATACAAGGATCACGTCTACCAAGTT
701 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTT
* **
10381525 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAATCCCGAATCC--AAAAAGTTTTGAAAAT
765 TGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATCCC-AAACCGTAAAAAGTTTCAAAAAT
* *
10381588 CATGAAAAATAGAAAACGAGTCGTGTTCCCATGAAACTTCACGTGAAGGC
828 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
10381638 TTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAAAAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
*
10381703 GTGCCTAAACCCACCTACCACCCTATCAATCCACGGC-T-----T---G-C-C-C--G-C--C-T
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
10381750 A---------------CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCC
131 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
10381800 AGTCTAACATCGGACCAGACCGAGCGTTGTGGCAGCAGGATTGACAGCACGCA-AAGGAGGACCC
196 AGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGG-GGACCC
* * * *
10381864 -AGCCTATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGG-TCGAGCGCCCGTACGCTCGTTTCG
259 GA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCG
* **
10381927 TGGGTTGACTTAGGCATACGGAGTTTATTCTTAGTCTAAGCATACAGAGTTCATTCACAACCTAA
322 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--A-AG---A-T-------T--
* * * * *
10381992 GATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA--T
365 GA---GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTT
* ** * ** * *
10382055 TT-TTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGTGGCATTGGGGTTTCG
427 TTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCG
* *
10382119 GCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
492 ACGATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
10382184 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
557 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * * *
10382249 ATAGGTTTGCTACCAGTTGCCATTAAAGTGCCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
622 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
10382314 AATCTTGTGCACTTCGAGTTTTTTGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
687 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
** * ** *
10382379 CGTCTACCAAGACTGGGGCCAAAACT-CTTTCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
752 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
* * * *
10382443 GTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
817 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
** *
10382504 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACGTAGAAATATGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
* *
10382569 GTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCAT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-A-
* ** * * * * *
10382634 TGTACCCGCCCGCCAGCCCGCCTGCCCGCCCGCTTATTTCATCAGTTGGCTTAGGCATACAGAGT
128 CGTA-GTGCCCGCCCGCCCGCCTGCCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
10382699 TCATTCCTAGTCTACGATCAGAAC-AGACCGAGGGTTGCGGTAGCAGGATCGGTAGCATGCAGAA
188 TCATTCCCAGTCTAAGATCAG-ACGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAA
* * * * *
10382763 GGGGGCCCGATCGATCCCCTGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
251 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
10382828 GTTTCGTGGGTTGACTTAGGCAGACGGAGTCCATTCCCAGTCTAACATCG-GACCAGACCGAGGG
316 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACCGAGGG
* * * * *
10382892 TTGTGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCGGGGCACCAT
381 TTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT
10382957 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGG
446 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGG
** *
10383022 GGTGTGGTCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGG----CTATCCCTCA
511 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** * *
10383083 TCAAACCTCGAGAACAAACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAG
576 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
10383148 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTAGTACACTTCGAGT
641 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * **
10383213 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTAGTTGC
706 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
10383278 CAAAACGCCTTCCGAAAAAAGTTTTAAAAAATCCCAAACCATAAATAGTTTCAAAAATCGTGAAA
771 CAAAACTCCTTCC-AAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAA
* *
10383343 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCAGGTGAAGGC
835 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
10383386 TTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCACAG-CGAAATATGAAGG
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGA
* * *
10383450 TGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACA
65 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * *
10383515 TAGTGCCCG--CACCC-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTTCATTA
130 TAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATTC
** * * * *
10383576 CCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAG-AGAGGGAC
194 CCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG-GGGAC
* * *
10383640 CTGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCG
257 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
10383705 TGAGTTGACTTAGGCATACGGAGTT-ATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGG
322 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACCGAGGGTTGCGG
* * ** * **
10383768 CAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGCCAA
387 CAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGG
*
10383833 AGCATCGTCGGAGAACCTGACC-AGCAGG-ATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTG
452 AGCATCGTCGGAGAACCTGACCGA-C-GGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTG
*
10383895 TGCATACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
515 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
10383960 ACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTT
580 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
10384025 TAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
645 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
10384090 AGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAA
710 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* *
10384154 ACTCCTTCCAAAAAAATTTTGAAAAAT-ACAGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAAT
775 ACTCCTTCCAAAAAAATTTTAAAAAATCCCA-AACCGTAAAAAGTTTCAAAAATCA-TGAAAAAT
*
10384217 AGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGC
838 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
10384257 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATTTGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
*
10384322 GTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * *
10384387 AGTGCCCGCCCACCCACCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCC
131 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
10384452 AGTCTAAGATTAGACCAGACCGAGGGTTGAGGCAGTAGGATCGGCAGCACGCAAAAGAGGACCTG
196 AGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCG
* *
10384517 GCCTATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-TCGAGCGCCCGCACGCTCGTTTCGTG
260 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTG
*
10384581 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCGCAGCCTAAGA
324 GGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--A-AG---A-T-------T--GA
* * * * *
10384646 TCGGACCAAACCGAGGGTTGCGGTAGCCCATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
367 ---GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTT
* *
10384711 CTTCGCCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGGTTTCGAC
429 CTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGAC
*
10384775 GATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
494 GATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
10384840 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
559 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
10384905 AGGTTTGCTACCAGTTGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
624 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
10384970 TCTTGTACACTTCGAGTTTTTTGTTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCATG
689 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* ** * *** ** ***
10385034 TCTACCACGACTGGGGCCAAAACTTCTTTTGAAAAAATTTTAAAAAATCCTGAACAACAAAAAGT
754 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGT
** * * *
10385099 TTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
819 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
** * * *
10385158 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACGTAAAAATGTGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
*
10385223 GTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
10385288 ACTTCCCGCCCGCCCGTCCACCCTTTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
131 AGTGCCCGCCCGCCCG-----CC--T-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
10385353 TCATTCCTAGTCTAAGATC-GAACCAGACCGAGGGTTGCGGTAGCAGGATCAGTAGCATGCAGAG
188 TCATTCCCAGTCTAAGATCAG-ACGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAA
* * ** * * *
10385417 GGGGACCCGATCGATCCTCGGCTTGTACATCTCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTC
251 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
10385482 GTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGG
316 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACCGAGGG
* * * * * * *
10385546 TTGTGGTAGCACATGCTAGGC-TCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGAGGCACCA
381 TTGCGGCAGCACATGCTGGGCTTGA-GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA
** *
10385610 TCACCGGAGCATCGTCGGAGAACCTGACCGACGGCGTTAGGGTTCCGACGATCG-GGGGGCCGGG
445 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGG
* *
10385674 GGGTGTGCTCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTC
510 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
10385738 ATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
575 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
**
10385803 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGGC-AAATCTTGTACACTTCGAG
640 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
10385867 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG
705 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * **
10385931 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCAAAAAT--TGTGA
770 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAA
* * *
10385994 AA-A-AAAATGAGTCGTCTTGCCATGAAGCTTCACGTAAAGGC
835 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
10386035 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATTTGAAGAT
1 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
*
10386100 GTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
66 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * *
10386165 AGTGCCCGTCCACCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
131 AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * ** * *
10386230 AGTCCAAGATCAGACCGGACCGAGGGTTGCTGCAACAGGATCGGCAGCACGTTGAGGGGGACCCA
196 AGTCTAAGATCAGA-CGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCG
** * * * ** *
10386295 ACATATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTTTTCTTCATG
260 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT-TTCGTG
10386360 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
324 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
10386398 CATACGAAGT
Statistics
Matches: 5693, Mismatches: 651, Indels: 368
0.85 0.10 0.05
Matches are distributed among these distances:
852 6 0.00
853 173 0.03
854 1 0.00
855 1 0.00
858 1 0.00
859 1 0.00
861 1 0.00
862 2 0.00
864 5 0.00
865 10 0.00
866 170 0.03
867 197 0.03
868 129 0.02
869 199 0.03
870 219 0.04
871 347 0.06
872 48 0.01
873 171 0.03
874 156 0.03
875 56 0.01
876 9 0.00
877 458 0.08
878 805 0.14
879 18 0.00
880 193 0.03
881 141 0.02
882 363 0.06
883 167 0.03
884 140 0.02
885 129 0.02
886 310 0.05
887 95 0.02
888 5 0.00
894 1 0.00
895 1 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 34 0.01
901 563 0.10
902 2 0.00
903 12 0.00
904 1 0.00
905 1 0.00
906 2 0.00
907 158 0.03
908 10 0.00
909 177 0.03
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAGACCAGACCGAGGGTTGCGGCAGC
ACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
TCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCACA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGC
Found at i:10381139 original size:26 final size:26
Alignment explanation
Indices: 10381087--10381139 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10381077 GTTGACTTAG
* ** *
10381087 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACCGAGTTCATTCCCAATATAA
10381113 GCATACCGAGTTCATTCCCAATATAA
1 GCATACCGAGTTCATTCCCAATATAA
10381139 G
1 G
10381140 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAATATAA
Found at i:10384643 original size:26 final size:26
Alignment explanation
Indices: 10384592--10384644 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10384582 GTTGACTTAG
* *
10384592 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGCCTAA
10384618 GCATACAGAGTTCATTCGC-AGCCTAA
1 GCATACAGAGTTCATTC-CTAGCCTAA
10384644 G
1 G
10384645 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGCCTAA
Found at i:10386401 original size:26 final size:26
Alignment explanation
Indices: 10386371--10386423 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10386361 GTTGACTTAG
*
10386371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10386397 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10386423 G
1 G
10386424 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10390337 original size:887 final size:890
Alignment explanation
Indices: 10389111--10393336 Score: 4792
Period size: 887 Copynumber: 4.8 Consensus size: 890
10389101 GTTGACTTAG
* *
10389111 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCCGAGGGTTGTGACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGA-CCGAGGGTTGCGACAGCACATGCTG
*
10389175 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGTTGGA
64 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCA-C-TC---GCA---TCGGA
* * *
10389240 GAACCTAACCGGCGGCATTAGGGTT-CAGGCGATCGGGGGGGCCGGGGGTGTGCACACATGATGT
121 GAACCTGACCGGCGGCATTGGGGTTCCA-GCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGT
* * *
10389304 GCGATGGGTGCTGGTACTTGACCCTTATATTGGCCTCCTATCCCTCATCAAGCCTCGAGAACTCA
185 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
10389369 CACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGTGTCTGAAA
250 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
* * * * *
10389434 TGGAGACACTTTTTTCAAATGGTCAGAAATTCTTCTACACTTCGAGTTTTTGGCTGAATTTTTTT
315 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
10389499 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCTTTC-GAGA
380 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTGAAA
* * *
10389563 AAATTTTAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
445 AAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTC
*
10389628 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
10389693 CATTGGCACACAGAAATATGAAGATGTGCCAAAACCAACCTACCACCCTATTGATCCACGACTTG
574 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
10389758 TGCATCCCGTTTCTCTGGTCGACGTTCTGCTCGCCCCCCCCGCCCGCTCATTTCGTCGGTTGGCT
639 CGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCCCCCCGCCCGCTCATTTCGTCGGTTGGCT
*
10389823 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAGACTGAGGGTTGCGGTAGCAGGATCG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACGGTAGCAGGATCG
* * * *
10389887 GCAGCACACAGAGGGGGACCTGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAG-CGGTTCAG
768 GCAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
* * * *
10389951 CGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
833 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10390009 GCGTACAGAGTTCATTCCCAGCCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
10390074 CTCGGGCATGTGCCGGTGCCGTATTTTTCTTCACCGGGGCACCA-TC-C-TCGGAGAACCTGACT
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCACTCGCATCGGAGAACCTGACC
* * * * **
10390136 GGCGACATTGGGGTTCCAGCAATCTGGGGGGCCAGGGGGATGTGCGCACACGATGTATGATGGGT
131 GGCGGCATTGGGGTTCCAGCGATCGGGGGGGCC-GGGGG-TGTGCGCACATGATGTGCGATGGGT
* * * * *
10390201 GCTGGTACTTAGCCCTTAT-TTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCACACTCCTTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
***
10390265 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
*
10390330 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
10390395 AAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGACCAAAACTCCTTCC-GAAAAAATTTT--
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTGAAAAAATTTTAA
* ** *
10390457 --AA----AACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAGACAAGTCGTCTTGCCATGAA
454 AAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
10390516 ACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTAC-AGCCATAAAAAT-GCAATTTGGCA
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-A-TTGGCA
* * *
10390578 -AGCAGAAATATGAAGATGTGCCCTAAACCCAGCTACCACCCTATCACGATCAATGCGCTTGCGC
582 CA-CAGAAATATGAAGATGTG-CCTAAACCCACCTACCACCCTAT--CGATCCACG-GCTTGCG-
* * * * * * * *
10390642 CATTCCATCTCTCTAGCCA-GCTAGTGCCCGCCCGCCCGTCTGCCCGCTCATTTCATC-ATTTGC
641 CATCCCGTCTCTCTGGCGACG-TAGTGCCCGCCC-CCC--CCGCCCGCTCATTTCGTCGGTTGGC
* * * * *
10390705 TTAGGCATACAGAGTTCATTCCCAGT-TAGGATCAAACC-GAACAGAGGG---CTG-CGCAGGA-
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG-ACTGAGGGTTACGGTAGCAGGAT
* * * * *
10390763 CGGCAGCACG-AGAGGGTGACCCGGTGGATCTCC-GGCTTGCGCATCCCGACCCTCTGGCC-GTT
766 CGGCAGCACGCAGAGGGGGACCCGGTCGATC-CCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCT
* * * * * * *
10390825 GA-C-ACCG--CGC-CG--T--TAGGTCTCATTTAGGC-T--GG-GTTGA----C--TTTAG
830 GAGCGCCCGCACGCTCGTTTCGTGGGT-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
10390868 GCATACGGAGTTCAATCCCAGAGTAAGATCGGATCGGACCGAGGG-TGCGGCA-CA-ATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * *
10390930 CTCAGGCATGTGCTGGTGCCACATTTTTTCTTC-TCGGGGCACCA-T--CACCGGAGAACCTGAC
66 CTCGGGCATGTGCTGGTGCCGTA-TTTTTCTTCACCGGGGCACCACTCGCATCGGAGAACCTGAC
** * ** * * * * * * *
10390991 CGAAGCCATACGGTTTCGA-CGATC---GGGGCCGGGGGTGTGCCCACTTTACGCGCGAT--GTG
130 CGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
10391050 CTAGTACTTGGCCCTTATAGTT-GCCCCCTATCCCTCACTCAAACCTCAAGAACTCACACACCCT
195 CTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACCCCCT
*
10391114 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAATAGCCATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
10391179 CTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGT
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** * * *
10391244 CAACAAAAATATAAGTATCAAATCTACGAATTTTGGGGCCAAAATTCCTTCC-GAAAAAATTTTA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTGAAAAAATTTTA
* * *
10391308 GAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATG
453 AAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
* *
10391373 AAACTTCACGTGAAGGCTTAAGGGGCCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * **
10391438 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTATGCATCCC
582 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** ** *
10391503 GTCTCTCTGGCCGACGTAGTGCTCG-CCAGCCCGCCCGCTTGTTTCGTGGGTTGGCTTAGGCATA
647 GTCTCTCTGG-CGACGTAGTGCCCGCCCCCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
* * * *
10391567 CAGAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTACGGTAGCAGGATCGGTAACACG
711 CGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACG
* ** * *
10391632 CAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGTA
776 CAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCA
* * *
10391697 CGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTGTAA
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
10391747 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCAAGGGTT-CCAGCAGCATATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGA-CAGCACATGCTG
* * * *
10391810 GGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCATCGGGGCACCA-T--CACCGGAGAACCTGA
64 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCACTCGCATCGGAGAACCTGA
* ** * * *
10391872 TCGGCGGCATTGGGGTT-TTGACGATC-GAGGGGCTGGGGGGTGTACGCACATGATGTGCGATGG
129 CCGGCGGCATTGGGGTTCCAG-CGATCGGGGGGGC-CGGGGGTGTGCGCACATGATGTGCGATGG
*
10391935 GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
10392000 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAC
*
10392065 ACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT-TGCAT
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCAT
* *
10392129 GCCAACAAAAATATAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAAAAATTT
386 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTGAAAAAATTT
** * *
10392193 TAAAAAATCTCGAACCGCGAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTTTCCA
451 TAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCA
* *
10392258 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCTATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
10392323 CATGCAGAAATATGAGGATGTGCCTAAACCTACCTACCGCCCTATCGATCCACGGCTTGCGCATC
580 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * *
10392388 CCGTCTCTCTGGTCGGTGTAGT----G-CCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
645 CCGTCTCTCTGG-CGACGTAGTGCCCGCCCCCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
* * * * * * *
10392448 TGCGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCA
709 TACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCA
*** * * * * *
10392513 CATGGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCTCGCCCCTCTAGCCGACTGAGCGTCCG
774 CGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCG
* * * * *
10392578 CACGCTCGTTTTGTCGGTTGACTTAGGCATACAGAGTTGATTCCCAGTATAA
839 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
10392630 CCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
10392695 CTCGAGCATTTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTTGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCA-C-TC---GCATCG--G-AGA
* *
10392760 ACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGGTGTGCGCAGATGATGT
123 ACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCC---GGGGGTGTGCGCACATGATGT
* * *
10392825 GCGATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTGTCCCTCATC-AACCTCAAGAACTCA
185 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** *
10392889 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAAAGGAATTAAAGTGTCTGGAA
250 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
* * *
10392954 TGGGGACAC-TTTTTCAAATGGTCACAAAACCTTGTGCACTTCGAGTTTTTAGCTGAATATTTTT
315 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
10393018 GTGCATGCCAACAAAAATAC-AGCGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTT-CTGAA
380 GTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTGAA
* * * *
10393081 AAAATTTTAAAAAATCCGAACAC-AAAAAAGTTT---GAATTGTGAAAAATAG--AA-GAG-CGT
444 AAAATTTTAAAAAATCCGAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCG-
* * * * *
10393138 TTTTACCCTGAACACTTTACGTG-AGGCTTAA-GGA-C-TTTTATGAATTT-CAAG-CAT-AAAA
507 TCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
10393196 TGGCATTGGCATGCAGAAAT-TGAAGATGT-ACTAAACCCA-CTACCACCC-AT-GATCC-CGGC
571 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
10393255 TTGCG----CCGT-T-T-TGGCGGCGTAGTGCCCG--CTCGCCG--CG-TCGTTTCGTCAGTTGG
636 TTGCGCATCCCGTCTCTCTGGCGACGTAGTGCCCGCCCCCCCCGCCCGCTCATTTCGTCGGTTGG
10393308 CTTA-GCATACGGAGTTC-TT-CCAGTCTAAG
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
10393337 TGGACGAACG
Statistics
Matches: 2861, Mismatches: 352, Indels: 263
0.82 0.10 0.08
Matches are distributed among these distances:
848 19 0.01
849 15 0.01
850 214 0.07
851 5 0.00
852 19 0.01
853 29 0.01
854 21 0.01
855 21 0.01
856 74 0.03
857 21 0.01
858 12 0.00
859 145 0.05
860 81 0.03
861 18 0.01
862 3 0.00
863 3 0.00
865 17 0.01
866 5 0.00
867 12 0.00
868 33 0.01
869 20 0.01
870 7 0.00
871 5 0.00
872 8 0.00
873 7 0.00
875 5 0.00
876 24 0.01
877 92 0.03
878 103 0.04
879 57 0.02
880 20 0.01
881 34 0.01
882 111 0.04
883 330 0.12
884 22 0.01
885 15 0.01
886 61 0.02
887 617 0.22
888 98 0.03
889 11 0.00
890 1 0.00
891 19 0.01
893 1 0.00
894 51 0.02
895 127 0.04
896 82 0.03
897 133 0.05
898 30 0.01
899 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCACTCGCATCGGAGAACCTGACC
GGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTGAAAAAATTTTAAAA
AATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCGACGTAGTGCCCGCCCCCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10391750 original size:26 final size:26
Alignment explanation
Indices: 10391721--10391773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10391711 GTTGACATAG
* *
10391721 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10391747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10391773 G
1 G
10391774 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10395003 original size:26 final size:26
Alignment explanation
Indices: 10394967--10395016 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10394957 GACTTAGGCA
10394967 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
10394993 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
10395017 GTCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:10396240 original size:898 final size:882
Alignment explanation
Indices: 10395018--10401209 Score: 6997
Period size: 842 Copynumber: 7.1 Consensus size: 882
10395008 CAGTCTAAGG
*
10395018 TCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
1 TCAGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
* * * * * *
10395083 CTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACGTTGGGGTTCCGGC
65 CTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
*
10395148 GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
130 GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
10395213 TGGCCCCCTATCCCACATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATCTTAC
195 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
10395278 CGGTTTGCGGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
260 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
10395343 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAGGATAACG
325 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
10395408 TTTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAGATCCCAAATCGTAAAAGGT
390 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGT
* * *
10395473 TTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGG
455 TTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
10395538 GACCATTGTTTGAATTTAAAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTG-CT
520 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
* *
10395602 CAAACCCACCTACCACCCTATCGATCCATGGCTTGTC-CATCCCGTCTTTCTGGCCGGCGTAGTG
585 -AAACCCACCTACCACCCTATCGATCCACGGCTTG-CGCATCCCGTCTCTCTGGCCGGCGTAGTG
**
10395666 CCCCCCCGCCCGCCCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
648 ----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
10395731 ATCGGACCGGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTTGATCC
709 ATTGGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCC
* * * *
10395796 CCAGCTTGCGCATCCCGCCACTCTGGCCGACCGAGCGCCCACACGTTCGTTTCGTGGGTTGACTT
774 CCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
10395861 AGGCATAC-GAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTTCCAGTCTAA
839 AGGCATACGGAGTTCATTCCCAGTCTAAG-ATAC-GAG-T-A---CCAG--T-A
*
10395914 GGTCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTT
1 --TCAGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTT
* * * * *
10395979 TTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACGTTGGGGTTCCG
63 TTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
10396044 GCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
128 ACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
10396109 ATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATCTT
193 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
10396174 ACCGGTTTGCGGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
258 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
10396239 AATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCA
323 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
** * *
10396304 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAACTTTTAAAAAATCCCGAACC-------
388 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
10396362 ---------A---T-AAAAAT-----A--AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
453 GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* **
10396407 GCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
518 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGC
* * * *
10396472 CTAAACCCACCTACCACCCTATCGATGCATGGCTTGCGCATCCCATCTCTCTAGCCGGCGTAGTG
583 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * *
10396537 CCCACTCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
648 --C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
10396602 ATAGGACCGAAATGAGGGTTGCGGTAGTAGGATAGGCAGCACGCAGAGGGGGACCCGGCCGATCC
709 ATTGGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCC
* * * * *
10396667 CTTA-CTTGCGCATCCCGCCCCTCTCGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACT
774 C-CAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
10396731 TAGGCATACGGAGTTCATTCCCAGTCTAAGATA-G-G-ACCAG-A
838 TAGGCATACGGAGTTCATTCCCAGTCTAAGATACGAGTACCAGTA
* * * *
10396772 -CCGA-GG---GA-TG-T--GGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGC-GACATTTTT
1 TCAGACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTG-CATTTTT
* * * * *
10396827 CTTCGCTGCTGGGGCACCATCGCCGAACCATTACCGGAGAACCTGACCGGCGGTATTGGGGTTCC
65 CTTCGC--C-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * ** * **
10396892 -AGCGATTGGGGGGCCCGGCGGGTGTATGCACATGATGTGCAATGCATGCTGGTACTTGGCCCTT
127 GA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
10396956 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATT
191 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
10397021 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTTGAAATGGGGACACTTTTTTCAAATGGTCA
256 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCA
*
10397085 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGGA
320 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
10397150 TCATGTCTACCAAGTTTGGGGCAAAAACACCTTCCGAAAAAATTTTAAAAAATCCAAAACCGTAA
385 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAA
* *
10397215 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCT
450 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* ***
10397280 TAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
515 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATG
*
10397345 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTA
580 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
10397410 --------------G-T-G---C--C----GGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGA
645 GTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** ** * ** *
10397450 TCAGACCTAACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGGCCGATCCC
710 TTGGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCC
** * * * * * *
10397515 TGGCATGCACATCCTGCCCCTCTGGCC-AGCTGAGCACCCGCACGTTCGTTTCGTGTGTTGACTT
775 CAGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
10397579 AGGCATACGGAGTTCATTTCCAGTCTAAGAT-CG-G----A-T-
839 AGGCATACGGAGTTCATTCCCAGTCTAAGATACGAGTACCAGTA
* * **
10397615 T-----GGACCGAGGGTTATGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTATATTTTTC
1 TCAGACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
* ** * * *
10397675 TTCGTCGGGGCACCATCGTCGGAGCATCGTC-G-GAACCTGACCGGCAGCATTGAGGTTCCGGCG
66 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
*
10397738 ATCGGGGGGACC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATAT
131 ATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
10397802 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
195 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
10397867 AGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
260 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * * * **
10397932 TCTTGTACTCTTTGAGTTTTTAGCTTAATGTTTTTGTGCATGCTAACAAAAATACAGGGATCGGG
325 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
** * * *
10397997 TCTACCAACGTTT-TAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
390 TCTACCAA-GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
* * * *
10398061 TTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
454 TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
10398126 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
519 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
* * * * * *
10398191 TAAGCCCACCTACCACCCAATCGATCGATGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
584 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* *
10398256 CCACCCGCCCACTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
649 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * * * * * * *
10398320 ACCGGA-TCGAGGGTTGTGGCAGCAGGATCGACAACATGCAAAGTGGGACCCGAC-CATCCCCGG
714 ACCGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCAG
* * * * ** * *
10398383 CTTGCACATCCC-CCCCTTTTGTCGGTTGAGCGCCCGCACGATCATTTCGTGGGTTGACTTAGGC
778 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
10398447 ATATGTAGTTCATTCTCAGTCTAAGAT-C-AG-ACCAG-A
843 ATACGGAGTTCATTCCCAGTCTAAGATACGAGTACCAGTA
* * * *
10398483 TC-GACGG-TC----G---CTGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
1 TCAGACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
* * * ** **
10398539 ATCGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACTGGCGGCATCAGGGTTTTGACG
66 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * **
10398593 ATCGGGGGGCC-GGGGGGTGTCCGCACATGATGTACGATGGGTGCTGGTACTTGGAACTTATATT
131 ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
10398657 GGCCCCCTATCCCTCATCAAACC-CGAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT--
196 GGCCCCCTATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
10398719 A----------CA--AG---TT----TG-C-----T---G---C------CAAATGGTTACAAAA
260 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
10398747 TCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACG
325 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* ** * * *
10398812 TGTACCAATGTTT-TAGCCAAAACACCTTCTGAAAAAAATTTT-AAAAATCCCAAACCGCAAAAA
390 TCTACCAA-GTTTGGGGCCAAAACTCCTTC-CAAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
* * * *
10398875 GATTAAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAA
453 GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
10398940 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATGTGC
518 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGC
* * * * *
10399005 CTAAACCCGCCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGACGTAGTG
583 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-
* * * *
10399070 CCCGCTCGCCTGCCCGCCCGCTCGTTTCATCGGTTAGCGTAGGCATACAGAGTTCATTCCCAGTC
647 ---G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * ** * * * * *
10399135 TAAGATTGAACCAGACCGAGGGTTGCGATAGCAAGATCGGTAGCATGCAGAGGTGGACCCGGCAG
705 TAAGATTGGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTG
* * ** *
10399200 ATCCCCGGCTTGCGCATCCCGCTCCTCTGGCCGACTGAGTACCCGCACGCTCGTTTCATGGGTTG
770 ATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
10399265 ACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
835 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATA-CGAG-T-A---CCAG--T---A
* * * * * * *
10399325 TCAGGTCGGGCTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTCT
1 TCA-GACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTT
* * * * * * *
10399390 CTTCGTCGGGGCATCATCGTTGGAGCATCGCCGGAGAACTTGACCGGCGGCATTAGGGTTTCGAC
65 CTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * *
10399455 GATCGGAGGGGTCGGGAGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
130 GATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
10399520 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
194 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
10399585 CAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAA
259 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
10399650 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-ACAAGGATCAT
324 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * *
10399714 GTCTACCAAGTTTGGGGCCAAAACTGGTTCCAAAAACATTTTAAAAAATCCCGAACCGTAAAAAG
389 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
* * * * *
10399779 TTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCATGCCATGAAACTCCACGTGAAGGCTTAAG
454 TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
10399844 GGATCATTGTATGAATTTACAAGACC-TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
519 GGACCATTGTATGAATTTACAAG-CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGC
* * * * *
10399908 CTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCTGGCATGGTG
583 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * *
10399973 CCCGCCCACCCGTTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATTG
648 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
** ** * * * ** **
10400038 GATAGGACCAAAGGTTGCGGCAGCAAGA-CGGTAGCACGCAGAGGGGG-CCCAACTGATCCCTGG
713 GACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCAG
* * *
10400101 CTTGGGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCAATTT-GTGGGTTGACTTAGG
778 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGG
*
10400165 CATACGGAGTTCATTCCCAATCTAAGAT-C--G-----G-A
842 CATACGGAGTTCATTCCCAGTCTAAGATACGAGTACCAGTA
* * * ***
10400197 -C---CGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTACCATATTTTTC
1 TCAGACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
** * * * * * * *
10400258 TTCATCAGGGCACAATCGCCGAAGCATCGCCGGAGAACCTGACCGGCGGCGTTGGGGTTCCAACG
66 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
*
10400323 AT--------CGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
131 ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
10400380 GGCCACCTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACA
196 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
10400445 GGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAAT
261 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
10400510 CTTATACACTTTGATTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAAGATCACGA
326 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
10400575 CTACCAAGTTTGGGGCCAAAAC-CCATCTAAAAAAATTTTAAAAAATCCAAAAACGGAAAAAGTT
391 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
* * * *
10400639 TTAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACTTGAAGGCTTAGGGG
456 TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGG
*
10400704 GACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
520 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
* *
10400769 AAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCCCTGGCCGGCGTAGTGCC
585 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
*
10400834 CGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
650 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* * * * * * * * *
10400899 TCGAACCGAAGGTTGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGACTCGACTGATCCCTAAC-
715 CCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCAGCT
* * * * * **
10400962 TGCGCATCCAGCCCCTCTAGCCGGCTGAGCACCTGCACGCTCAATTCGTGGGTTGACTTAGGCAT
780 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
10401027 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
845 ACGGAGTTCATTCCCAGTCTAAG-ATAC-GAG-T-A---CC-A-GT---A
* * * *
10401077 TCGGATCGGACCGAGGATTACGACAGCACATGCTGGGCTCGGGCTTGTGCTGGTG-TCGCATTTT
1 TCAGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT-GCATTTT
* * * * * * * * * *
10401141 TCTTTGCTGAGGCACCATCGCCGAAGTATCACCAGAGAACCTGATCGACGGCATTGAGGTTCCGA
64 TCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
10401206 CGAT
129 CGAT
10401210 TTTACAGGTT
Statistics
Matches: 4565, Mismatches: 505, Indels: 461
0.83 0.09 0.08
Matches are distributed among these distances:
815 288 0.06
816 10 0.00
819 1 0.00
821 2 0.00
822 2 0.00
823 17 0.00
824 79 0.02
825 19 0.00
826 62 0.01
827 3 0.00
830 2 0.00
832 1 0.00
833 3 0.00
836 4 0.00
837 2 0.00
840 4 0.00
842 493 0.11
843 10 0.00
844 25 0.01
845 3 0.00
846 45 0.01
847 216 0.05
848 3 0.00
849 336 0.07
850 2 0.00
851 1 0.00
852 56 0.01
853 6 0.00
854 111 0.02
855 36 0.01
856 2 0.00
857 2 0.00
858 321 0.07
859 310 0.07
860 29 0.01
861 4 0.00
862 4 0.00
863 37 0.01
864 126 0.03
865 128 0.03
866 79 0.02
867 114 0.02
868 3 0.00
869 10 0.00
870 2 0.00
871 325 0.07
872 26 0.01
873 1 0.00
874 1 0.00
876 154 0.03
877 2 0.00
878 7 0.00
879 3 0.00
880 1 0.00
881 1 0.00
882 3 0.00
885 102 0.02
886 2 0.00
887 1 0.00
888 1 0.00
892 3 0.00
893 89 0.02
894 20 0.00
895 74 0.02
896 2 0.00
897 1 0.00
898 433 0.09
899 1 0.00
902 14 0.00
903 217 0.05
904 68 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (882 bp):
TCAGACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
CGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCAGCTT
GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATACGAGTACCAGTA
Found at i:10401059 original size:26 final size:26
Alignment explanation
Indices: 10401023--10401075 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10401013 GTTGACTTAG
*
10401023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10401049 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10401075 G
1 G
10401076 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10403377 original size:26 final size:26
Alignment explanation
Indices: 10403341--10403393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10403331 GTTGACTTAG
**
10403341 GCATACGAAGTTCATTCGTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10403367 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10403393 G
1 G
10403394 ATAGGTCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10403805 original size:893 final size:887
Alignment explanation
Indices: 10402016--10405142 Score: 3999
Period size: 893 Copynumber: 3.5 Consensus size: 887
10402006 TGATGTCCGA
* * *
10402016 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTG
1 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
10402081 TAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
66 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
10402146 GAATTTACAAGCCTTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
131 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
10402211 CCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTG----CCCGCCCG-
196 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGC
* **
10402271 ----CCGCTCGTTTCGTCAGTTAGG-TTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACC
261 CCCCCCGCTCGTTTCGTCAGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
10402331 -GATCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTA
325 AGATCAAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCAGCTTG
* * ** *
10402395 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATAC
390 CGCATCCCGCCCCTCTGTCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* ** * * *
10402460 GAAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCCAAGATCGGAT-CAGACCGAGG
455 GAAGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG-TCCAGACTGAGG
** * * * *
10402524 GTTGTGGCAGCACATGCTAGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCA--G-AGCA
519 G-T-CAGCAGCACATGCTAGGCTCGGGCATGTG-TTG-GCAGCATTTTTCTTCGTCAGGGCACCA
* * * *
10402586 TCGCCGGAGAACCTGACCGGTGGCATTGGGG-TTCTGACGATCGGGGGCCCGGGGGGTGTGCGCA
580 TCGCTGGAGAACCTGACCGGCGACATTGGGGTTTC-GACGATCGGGGGGCCGGGGGGTGTGCGCA
* *
10402650 CATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTG
644 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
10402715 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
709 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
10402780 GTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGA
774 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
10402845 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTT
839 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * * **
10402894 TGGTTCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCCAAACTATAAAAAGTTTCAAAAATCG
1 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * *
10402959 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAGCTTCATGTGAAGGCTTAAGGCACCATTGTAT
66 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
10403024 CAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATTTGAAGATGTGCCTAAACCCACTTA
131 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
10403089 CCACCCTATCGATCCA-GGCTTGCGCATCCCGTCTCTTTGGCCAGCGAAGTGCCCACCCACCCGC
196 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGC
* * * * *
10403153 CCCCCCGTTCCTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCAAGTCTAAGATCAGACCA
261 CCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * * * *
10403218 GACCGAGGGCTCCGGTAGCAGGATCGACAGGACGTAGAGGGTGACCCAGTCGATCCCCAGCTTGC
326 GATCAAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCAGCTTGC
** * *
10403283 GTGTCCCGCCCCTCTGTCTGGTTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
391 GCATCCCGCCCCTCTGTCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* *
10403348 AAGTTCATTCGTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGGTCCAGACTGAGGGT
456 AAGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACTGAGGGT
*
10403413 CACGACAGCTCATGCTAGGCTCGGGCATGTGTTGGCATTGCATTTTTCTTCGTCAGGGCACCATC
521 CA-G-CAGCACATGCTAGGCTCGGGCATGTGTTGGCA--GCATTTTTCTTCGTCAGGGCACCATC
*
10403478 GCTGGAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGGTGTGGGCAC
582 GCTGGAGAACCTGACCGGCGACATTGGGGTTTCGACGATC-GGGGGGCC-GGGGGGTGTGCGCAC
*
10403543 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAACCTTGA
645 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
*
10403608 GAACTCACAGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGT
710 GAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
10403673 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
774 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
10403738 ATTTTTTTATGGATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTT
839 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
10403787 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAGCCGTAAAAGGTTTCAAAAATCG
1 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * * *
10403852 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAATTTCACGTGTACGCTTAAGGGACCATTGTAT
66 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
10403917 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
131 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
10403982 CCACCCAATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCTCGC
196 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGC
** * **
10404047 CCAGCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
261 CCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
10404112 GATCAAGGGATACGGCAGTAGGATCAACAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGC
326 GATCAAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCAGCTTGC
* *
10404177 GCATCTCGCCCCTCTGGTCT-GCTGAGCACCCGCACGCTCATTTCGTGGGTTGACATAGGCATAC
391 GCATCCCGCCCCTCT-GTCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * ** **
10404241 -AGAGTTAATTCGTAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGAACTGGACTGAGG
455 GA-AGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACTGAGG
* * * * *
10404305 GTTGCAGCGGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGCATTTTTCTTTGTCGGGGCGCCA
519 G-T-CAGCAGCACATGCTAGGCTCGGGCATGTGTT-G-GCAGCATTTTTCTTCGTCAGGGCACCA
* * * *
10404370 TCGTCAGAGCATCACCAGAGAACCTGACCGGCGACGTTGGGGTTCCGATGATCGAGGGGGCCGGG
580 ---TC---GC-T----GGAGAACCTGACCGGCGACATTGGGGTTTCGACGATCG-GGGGGCCGGG
**
10404435 GGGTGTGCGCACATGATGTGCGATGCTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
633 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * *
10404500 ATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATCTTACCGGTTTGCGGCCAGTA
698 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
10404565 GCCTTTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAG
763 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
10404630 TTTTTAGGTAAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
828 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *** * *
10404690 TGGGGCCAAAACTCCTTTTGAAAAACTTTTAAAAAATCTCGAACCGT----A-----AAAAA-C-
1 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * *
10404744 -------------A--AGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGAGATCATTGTAT
66 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
10404794 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
131 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
10404859 CCACCCTATCGATGCACGGCTTGCGCTTCCCGTCTCTCTGACCGGCGTAGTGCCCACCCGCCCGC
196 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG-
** * *
10404924 CCGCCCGCTCGCTCGTTTTATCGGTGGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
260 CC-CCC-C-CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * **
10404989 ACCAGAGCAAGGGTTGCAGCAGTAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCTGGC
322 ACCAGATCAAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCAGC
* * ** * * * *
10405054 TTGCGCATCTCGCCCCTCTGGCCAGCTGATCGA-CCGCACGCTCGTTTCGTGGATTGACCTAGGC
387 TTGCGCATCCCGCCCCTCTGTCTGGCTGAGC-ACCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* **
10405118 ATA-TAGAGTTCATTCCCAGTCTAAG
451 ATACGA-AGTTCATTCGTAGTCTAAG
10405143 ATCAGGCCGG
Statistics
Matches: 1974, Mismatches: 226, Indels: 95
0.86 0.10 0.04
Matches are distributed among these distances:
877 195 0.10
878 194 0.10
879 2 0.00
880 3 0.00
881 187 0.09
882 1 0.00
885 4 0.00
886 55 0.03
887 202 0.10
889 1 0.00
890 38 0.02
891 10 0.01
892 85 0.04
893 353 0.18
894 309 0.16
895 7 0.00
896 5 0.00
897 2 0.00
900 2 0.00
901 1 0.00
903 193 0.10
904 85 0.04
905 40 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGC
CCCCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GATCAAGGGTTGCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCAGCTTGC
GCATCCCGCCCCTCTGTCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
AAGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAGACTGAGGGT
CAGCAGCACATGCTAGGCTCGGGCATGTGTTGGCAGCATTTTTCTTCGTCAGGGCACCATCGCTG
GAGAACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
Found at i:10405227 original size:159 final size:159
Alignment explanation
Indices: 10404954--10405301 Score: 500
Period size: 159 Copynumber: 2.2 Consensus size: 159
10404944 TCGGTGGGCT
*
10404954 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAGCAAGGGTTGCAGCAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCG
* ** * * * *
10405019 ACAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCTCGCCCCTCTGGCCAGCTGAT
66 ACAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCACGCCCCTCTGGCCAGCTGAG
10405084 CGACC-GCACGCTCGTTTCGTGGATTGACC
131 C-ACCTGCACGCTCGTTTCGTGGATTGACC
** * * * * *
10405113 TAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGGGTTGCGGTAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCG
* * * *
10405178 GCAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCCTCACGCCCGTCTGGCCGGCTGAG
66 ACAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCACGCCCCTCTGGCCAGCTGAG
*
10405243 CACCTGCACGCTCGTTTCGTGGGTTGACC
131 CACCTGCACGCTCGTTTCGTGGATTGACC
10405272 TAGGCATACGGAGTTCATTCCCAGTCTAAG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAG
10405302 CATACGGAGT
Statistics
Matches: 166, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 3 0.02
159 163 0.98
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.20
Consensus pattern (159 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCG
ACAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCACGCCCCTCTGGCCAGCTGAG
CACCTGCACGCTCGTTTCGTGGATTGACC
Found at i:10405311 original size:26 final size:26
Alignment explanation
Indices: 10405275--10405327 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10405265 GTTGACCTAG
10405275 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10405301 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10405327 G
1 G
10405328 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10406211 original size:26 final size:26
Alignment explanation
Indices: 10406175--10406227 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10406165 GTTGACCTAG
*
10406175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
10406201 GCATACCGAGTTCATTCTCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
10406227 G
1 G
10406228 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:10406347 original size:185 final size:185
Alignment explanation
Indices: 10406016--10406429 Score: 542
Period size: 185 Copynumber: 2.2 Consensus size: 185
10406006 GTTGGCTTAG
* * * * * *
10406016 GCATACGGAGTTCATTCCCATTCCAAGATTGGACCAGATCGAGGGTTGCGGTAGTAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAATAGGATCGGCA
* * * * * * * * * *
10406081 TCACGTAGAGAGGGATCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCAGCTGATCGG
66 ACACGCAAAGAGGGACCCAACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCGA
10406146 CCGGACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCGGACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
10406201 GCATACCGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAATAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAATAGGATCGGCA
* * * * *
10406266 ACAGGCAAAGGGGGACCCAACCAATCCCCGGCTTGCACATCCCGCTCCTCTGGCCGGTTGAGC-A
66 ACACGCAAAGAGGGACCCAACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCGA
* * *
10406330 CCTGTACGCTTGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCTAGTCTAA
131 CC-GGACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
10406386 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGG
10406430 TTCCGACAGC
Statistics
Matches: 197, Mismatches: 31, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 2 0.01
185 195 0.99
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAATAGGATCGGCA
ACACGCAAAGAGGGACCCAACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCAGCTGAGCGA
CCGGACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10406389 original size:26 final size:26
Alignment explanation
Indices: 10406360--10406412 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10406350 GTTGACCTAG
* *
10406360 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10406386 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10406412 G
1 G
10406413 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10408149 original size:26 final size:26
Alignment explanation
Indices: 10408119--10408174 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10408109 TGGATTGACT
10408119 TAAGCATACAGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATTCCCAATC
* * *
10408145 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
10408171 TAAG
1 TAAG
10408175 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:10409063 original size:26 final size:26
Alignment explanation
Indices: 10409027--10409081 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
10409017 GTTGACTTAG
*
10409027 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10409053 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10409079 GCA
1 GCA
10409082 CATGCTGGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10409934 original size:26 final size:26
Alignment explanation
Indices: 10409904--10409956 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10409894 GTTGACTTAG
10409904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10409930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10409956 G
1 G
10409957 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10410627 original size:892 final size:886
Alignment explanation
Indices: 10406201--10419098 Score: 14574
Period size: 892 Copynumber: 14.6 Consensus size: 886
10406191 CCCAGTCTAA
* * ** * * **
10406201 GCATACCGAGTTCATTCTCAGTCTAAGATTGGACC-AGACC-GAGGGTTGTGGTAATAGGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAG-GGGTTGCGGCAGCAGGATCGG
* * * * * * * * * * *
10406264 CAACAGGCAAAGGGGGACCCAACCAATCCCCGGCTTGCACATCCCGCTCCTCTGGCCGGTTGAGC
64 CAGCACGCAGA-GGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
* * * * * * *
10406329 ACCTGTACGCTTGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** * *
10406394 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGTTCCGACAGCACATGCTGGGCTCGGGCA
193 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
10406458 TGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCAACATCGTCGGAGCATCACCGGAGAACCTGACC
258 TGTGCTGGTGCCACATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAGAACCTGACC
* * *
10406523 GGCGGCATTGAGGTTCTGACGATCGGGGGGGCCGGGGGGAGTGTGCGCACATGATGTGCAATGGG
312 -GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGG
* * *
10406588 TGCTGATACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCACACCCCCT
374 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
10406653 TAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
439 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
10406718 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGC
504 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
10406783 CAAAAAAAATACAAGGATCACATCTAACAAATTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAA
569 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTT-A
* * * * *
10406848 AAAAATCCCGAACTGCAAAAAGGTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
632 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
10406913 AAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCA
697 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
10406978 TACAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGGTCCACGGCTCGCGCATTCC
762 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
10407043 G--TCTCTAGCCGGCGTAGT---------GCCCGTCCTCTCGTTTCATCGGTTGGCTTAG
827 GTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
10407092 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGGCAGCAGGATCGGCA
* * * * ** * ** * *
10407157 GCATGCCGGGGGGACCCGGCCGATCCCCGACTTGCGCAT-CCGCCCCTCTCACCGGCTGAGCACC
66 GCACGCAGAGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCC
*
10407221 CGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G-
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
10407281 --A----C---C---------A---GACCGATGGTTGCAGCTGCACATGTTGGGTTCAGGCATGT
196 TCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* *
10407325 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGGCATCGCCGGAGAACATGGCCGACG
261 GCTGGTGCCACATTTTTCTTCGTCGGGG------CA-C---CATCGCCGGAGAACCTGACCG-CG
* * * *
10407390 GCATTGCGGTTTCGACGATCGGGGGGGGCCGGTGGGTGTGTGCACATGATGTGCGATGGGTGCTG
315 GCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * *
10407455 GTACTTGGCCCTTATATTGGCTCTCTATCTCTCATCAAACCTCAAGAACTCACACCCCCATAAAG
379 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
10407520 AGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
444 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
10407585 TTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
509 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
10407650 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAT
574 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAAT
* * *
10407715 CTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTC
638 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
10407780 CACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
703 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * ** *
10407845 AATACGAAGATGTCCCTAAACCCACCTATCACCCTATCGATCCACATCTTGTGCATCCCGTCTCT
768 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
10407910 CTGGCTGGCGTAGTCCCCG-CCTGCCCGCCCGCTCGTTTCGTCGGTTGGCATAG
833 CTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
10407963 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAA-CTGAGGGTTACGGTAGCAGGATCTAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAG-GGGTTGCGGCAGCAGGATCGGC
* * * ** * ** *
10408027 AGCACACAAAGTGGGACCCGGCCGATCCCCGACTTAAGCATCCCGCCCCTCTGG-TCGACTGAGC
65 AGCACGCAGAG-GGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGC
* * * * * * *
10408091 GCCCGTACGTTCGTTTCATGGATTGACTTAAGCATACAGAGTTCATTCCCAATCTAAGCATACGG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
10408156 AGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGATGCTGGGCTTGGTCT
193 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC----TC-
* * * *
10408221 TGGGCTTGTGCTGGTGTCACATTTTTCATCG-CTGGGGCACGATCGTCGGAGCATCACCGGAGAA
253 -GGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGG--C-A----C----CATCGCCGGAGAA
* * * *
10408285 CCTAACCGGCCGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGCGCGCACATCATGTGCG
305 CCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
10408350 ATGGGTACTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACAC
369 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
10408415 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGG
434 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
10408480 GGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAACTGAATCTTTTTGTG
499 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
10408545 CATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
564 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAT
* * * *
10408610 TTTAAAAAATCCCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
628 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
10408675 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATT
693 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
10408740 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
758 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * ** *
10408805 TCCCGTCTCTCTGGCCGACGTAGTGCCCG-CTCGCCCTCCCGCTCGTTTCACCGGTTGGCTAAG
823 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * ** * * *
10408868 TCATACGAAGTTCATTCCCAGTTTAAGATCAGACCGGA-TTGAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAG-GGGTTGCGGCAGCAGGATCGGC
* * * * * ** * * *
10408932 AGCACACAGAGTGGGAC-CTGGTCGATCTCCGGCTTGCACATGCCGCCAATTTGGCCGGCTGAGT
65 AGCACGCAGAG-GGGACTC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
* * * * *
10408996 GCCCTCAAGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
10409061 AGTTCATTCCCAGTC------T-----------A----------AGCACATGCTGGGCTCGGGCA
193 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
10409099 TGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTAACC
258 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--C----G-----CCGGAGAACCTGACC
* * *
10409164 GACGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCATATGATGTGTGATGGGT
312 G-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
10409229 GCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCGTCCAACCTCGAGAACTCACACCCCCTT
375 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
10409294 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGCT-TCTGAAATGGGGACA
440 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-TGTCTGAAATGGGGACA
10409358 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
504 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** * * *
10409423 CAACAAAAATA-AAGGGATCACATCTACCCGGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTAA
569 CAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTA
* * ** ** *
10409487 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATGGAAAACGAGTCGTCTTGCCATG
632 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * *
10409552 AAACTTCACATGAGGGCTGAAGGAACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
697 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
10409617 TGCAGAAATGTGAGGATGTGGCTTAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
762 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
10409682 GTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCTGCCCGCCCGCTCATTTTGTCGGTTGGCTTAG
827 GTCTCTCTGGCCGGCGTAGTGCCCGCCC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
10409745 GCATACGGAGTTCATTCTCAATCTAAGATCAGACCAAACCAGGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGGCAGCAGGATCGGCA
* * * *
10409810 GCGCGCAGAGGGGCACTCGATCGATCCTCGGTTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGC
66 GCACGCAGAGGGG-ACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
* * *
10409875 TCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
10409940 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATG
195 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
10410005 TGCTGGCGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGAACCTGACCAGCGGTATTGAGC
260 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACC-GCGGCATTGGGG
* * *
10410070 TTCCGATGATCGGGGGGGCCGGGGCGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGC
324 TTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
** * * * *
10410135 CCTTATATTGGCCCCCTATCATTCATCAAACCACAAGAGCTCACACCCCCATAAAGAGCATTTGA
388 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
10410200 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
453 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
10410265 TCACAGAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAA
518 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
10410329 GGATCACATCTACCAAGTTTGGGGTCAAAAATCCTTCCAAAACAATTTTAAAAAATCCCAAACCG
583 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AATTTTAAAAAATCCCAAACCG
10410394 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
647 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
10410459 GCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
712 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
10410524 ATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGC
777 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
10410589 GTAGTGCCCGCCCGTCTGCCCGCCCGCTCATTTTGTCGGTTGGCTTAG
842 GTAGTGCCCGCCC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
10410637 GCATACGGAGTTCATTCTCAATCTAAGATCAGACCAAACCAGGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGGCAGCAGGATCGGCA
* * * *
10410702 GCGCGCAGAGGGGCACTCGATCGATCCTCGGTTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGC
66 GCACGCAGAGGGG-ACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
* * *
10410767 TCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
10410832 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATG
195 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * ** *
10410897 TGCTAGTGCCGCATTTCACTTC-TCCGGGGACCATCGCTGGAGCATCACCGGAGAACCTGACCGA
260 TGCTGGTGCCACATTTTTCTTCGT-CGGGG--CA---C-----CATCGCCGGAGAACCTGACCG-
* * * * *
10410961 CGGCATTGGGTTTTCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGAAGGGTGCT
313 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * *
10411026 GGTAGTTGGCTCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACTCCTTTAAA
378 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
10411091 GAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTT
443 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
10411156 ATTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAC
508 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
10411221 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAA
573 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAA
* * * *
10411286 TCCCGAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACT
637 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
10411351 TCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
702 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
10411416 AAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
767 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
10411481 TCTGGCCAGCGTAATGCCTGCCCACCCCCCGCCTGCTGCTCGTTTCGTCGGTTAGCTTAG
832 TCTGGCCGGCGTAGTGCCCG-CC-CCGCCCGCC--C-GCTCGTTTCGTCGGTTGGCTTAG
* * * *
10411541 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGCAGCAGCAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAG-GGGTTGCGGCAGCAGGATCGGC
* * * * * * *
10411605 AGCACGAAGAGGGGGACCCGATCGATCCTCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCG
65 AGCACGCAGA-GGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
10411670 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-TATCATTCCCAGTCTAAGCATACGG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT-TCATTCCCAGTCTAAGCATACGG
* *
10411734 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATACTGGGCTCGGGCA
193 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*
10411799 TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCATCGGAGAACCTGACC
258 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--C----G---C--CGGAGAACCTGACC
* * * * *
10411864 GGAGGCATTGGGGTTCCGACGATCGAGGGTGCCGGGGGGGTGTACGCACATGATGTGTGATGTGT
312 -GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCAC---A----TGATGTGC
*
10411929 GATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
368 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
10411994 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
433 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
10412059 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGCTGAACTGTTTTG
498 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
10412123 TGCATGCCAACCAAAATGGAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
562 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
10412188 TTTTAAAAAATCTCAAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
627 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
10412253 CCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-AAGCCATACAAATGGCAT
692 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
10412317 TGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCGCCCTATCGATCCAAGGCTTGCGC
757 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
10412382 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCCGCCGCCCACCGCCCGCTCGT
822 ATCCCGTCTCTCTGGCCGGCGTAGT------------GCCCG-CC-CCG--C-CCGCCCGCTCGT
** **
10412447 TTCGTCAATTAACTTAG
870 TTCGTCGGTTGGCTTAG
* * * **
10412464 GCATACGAAGTTCATTCCCAGTCTAACATCAGACC-ACACCAAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAGGGGTTGCGGCAGCAGGATCGGC
** * * * *
10412528 AGCACGCAGAAGGGGAC-CTGGCCGATCCCCGGCTTACGCATCCCGCCCCTCTTGCCGGTTGAGC
65 AGCACGCAG-AGGGGACTC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
*
10412592 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT--C---CT-AGTATA---
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
10412648 AG---A-T--C-G-----GAATGGA-C--A--GAGGGTTGCGGTAGCACATGCTAGGCTCGGGCA
193 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** * *
10412696 TGTGTTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATC
258 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAG-A--ACC--TG-ACC-G--C
* ** *
10412761 GGCAGTATTGGGGTTCTGGTGATCGGGGGGGCCAGCGGGGGTGTGCGCACATGATGTGTGATGGG
314 GGC---ATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGG
* * *
10412826 TGCTGGTAGTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACTCCCT
374 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
10412891 TAAAGAGCATTAGAGATTTTACAGGTTTGCTGTCAGTACCCATTAAAGTGTCTAAAAATGGGGTC
439 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGAC
*
10412956 ACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTT-GCTGAATTTTTTTGTGCAT
503 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTTAGCTGAATTTTTTTGTGCAT
* * *
10413020 GCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCATCCGAAAAAATTTT
567 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTT
* * * * *
10413085 TAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCATGCCAT
631 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
10413150 GAAACTTCACGTGAAGGTTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGC
696 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** *
10413215 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
761 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
10413280 CGTCTCACTGGCCGGCGTAGTGCCCGCCTACCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTAG
826 CGTCTCTCTGGCCGGCGTAGTGCCCG-C--CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
10413344 GCATACGGAGTTCATTCCCAGTCTAAGATCATACC-AAACTGAGGGTTGC-G-A-CAGCA-C-G-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAG-GGGTTGCGGCAGCAGGATCGGC
* * *** ** * *
10413402 -G-A-G-AG-GGGGAC-CTGATCAATCCCCGGCTTACGCATCTTACCCCTCTGGCCAGTTGAGCA
65 AGCACGCAGAGGGGACTC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
* * * *
10413461 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATACGAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * * *
10413526 GTTCATTCCTAGTCAAAGATCGGACCGGATCGAAGGTTGCGGCACCACATGCTGGGCTTGCGCAT
194 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
10413591 GTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCAGAGCATCGTCGGAGAACCTAACCG
259 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT---C---G---C--CGGAGAACCTGACC-
* * * * *
10413656 GCGGTATTGAGGTTTCGACAATCGGGGGGGCCGGGGCGGTGTACGCACATGATGTGCGATGGGTG
312 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTG
*
10413721 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTA
376 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
10413786 AAGGGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
441 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
10413851 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGAATGCCA
506 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
10413916 ACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAATTTTAAAAA
571 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAA
* ** *
10413981 ATCCTAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAAC
636 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * **
10414046 TTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGCCATTGGCACACA
701 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
10414111 GAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTCCGCATCCCGTCT
766 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
10414176 CTCTGGCTGGCGTAGTGCCCACCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAG
831 CTCTGGCCGGCGTAGTG-CC-CGC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
10414235 GCATATGGAGTTCATTCCCAATCTAAGATTAGACCGGACCAAGGGTTACGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGGCAGCAGGATCGGCA
* * *
10414300 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTAG-CCCTCTGGCCGGCTGAGCG
66 GCACGCAGA-GGGGACTCGATCGATCCCCGGCTTGCGCATCC-CGCCCCTCTGGCTGGCTGAGCG
* * * * * *
10414364 CCCGCACGCTCATTTTGTGTGTTGACTTTGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
10414429 GTTCATTCCCAATTTAAGATTAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAT
194 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
10414494 GTGCTAGTGTCGCATTTCTCTTC-TCCGGGGCACCATCGCCGGAG--CATCA-C-CGG-A-----
259 GTGCTGGTGCCACATTTTTCTTCGT-CGGGGCACCATCGCCGGAGAACCTGACCGCGGCATTGGG
** *
10414548 GAACCTGAC---C-----GG-C----GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGG
323 GTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
10414600 CCCTTATATTGGCCCCCTGTCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGGGCATTTG
387 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
10414665 AGATTTTACAGGTTTGCTGCCGGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
452 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
10414730 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGAATGCCAACAAAAATGCA
517 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
10414795 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACC
582 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCAAACC
*
10414860 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAA
646 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
10414925 GGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGACATTGGAATGTAGAAATATGAA
711 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* *
10414990 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTATGGCCGG
776 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
*
10415055 CATAGTGCCCGCCCGCCAGGCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
841 CGTAGTGCCCG-CC-CC--G-C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
10415108 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCCAA-CTGAGGGTTGCAGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAG-GGGTTGCGGCAGCAGGATCGGC
* * ** * *
10415172 AGCAAGCAGAGAGGGACCCGATCGATCCCTAGCTTGTGCATCCCACCCCTCTGG-TCGGCTGAGC
65 AGCACGCAGAG-GGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGC
* * *
10415236 GCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGCATACGG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
10415301 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGTTTGCGGCAGCACATACTGGGCTCGGGCA
193 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
10415366 CGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGCTGGAGCATCGTCAGAGAACCTGACC
258 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--C----GC--CG---GAGAACCTGACC
* * * *
10415431 GATGGCATTGGGGTTTCGGCGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
312 G-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
10415496 CTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
376 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
10415561 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
441 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
10415626 TTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
506 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * ** *
10415691 ACAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAAATTAATAA
571 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAA
* * * * *
10415756 ATCTCGAACCGCAAAAAGTTTCAAAAATCATCAAAAATAGAAAACTAGTCGTCTTGCGATGAAAC
636 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
10415821 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGGCATGTA
701 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
10415886 GAAATATGAAGATGTGCCT-AACCTAACCTACCACCCTATCGATCCATGGCATGCGCATCCTGTC
766 GAAATATGAAGATGTGCCTAAACC-CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** * *
10415950 TCTCTGACAAGCATAGT----G-CCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAG
830 TCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * ** * *
10416002 GCATACGGAGTTTATTCCCAGCCCAAGATTC-GACCGGACAAAGGGTTGAGATAGAAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGAACCAGGGGTTGCGGCAGCAGGATCGGC
* * * * ** * * *
10416066 AGCACGCAGAGGGGGCCCCGACCGATCCCCGTCTTGCGCATCCTACCCCGCTGGCCGACTGAGCG
65 AGCACGCAGA-GGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
* * * *
10416131 GCCGCACACTCGTTTCGTGGGTTGACTTAGGCATTCGGAGTTCATTCCTAGTCTAAG-AT-C--A
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
10416192 G---A----C---C-------GGACC-G--C-A-AGTTACGGCAACACATGCTGGGCTTGGGTAT
194 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* **
10416235 GTGCTGGTGCCACATTTTTTTTCGTCGGGGCACCATCGCTAGAGAACCTGACCAGCGGCATTGGG
259 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACC-GCGGCATTGGG
* * * * * * * *
10416300 GTTCTGGCAATCGGGGGGGTCGGGGGGCGTACGCACATGGTGTGAGATGGGTGCTGGTACTTGGC
323 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
10416365 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAA
388 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
10416430 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTGAAATGG
453 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
10416495 TCACAAAATCTTGTACATTTCGAGTTTTTAGCTTATTTTTTTTGTGCATGCCAACAAAAATACAA
518 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
10416560 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCTCAAACAGC
583 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCAAACCGC
* * * *
10416625 AAAAAGTTTCAAAAATTATGAAAAATAAAAAACGAGTCGTGTTGCCATGAAACTTCACATGAAGG
648 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * *
10416690 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCTTTGGCATGCAAAAATATAAAAA
713 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
10416755 TGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTTTGGCCGGCG
778 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
10416820 TAGT----G-CCCGCCCGCCCGCTCGTTTCGTCGGTTGACTTAG
843 TAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
10416859 GCATACGGAGTTCATTCCCGGTCTAAGATTAGACCGGACC-GAGGGTTGCGGCTGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAG-GGGTTGCGGCAGCAGGATCGGC
** ** *
10416923 AGCACGCAGAGGTGGACTCGGCCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCG
65 AGCACGCAGAGG-GGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
* * * *
10416988 CCCGCACGCTCGTTTCGTCGGTGGACTTAGGTATACGGAGATCATTCCCAGTCTAAG-AT-C--A
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
10417049 G---A----C---C---------A---GACCGAGGGTTACGGCAGCACAGGCTGGGCTTGGGCAT
194 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
10417092 GTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGATCG
259 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---GC--C---GGAGAACCTGA-CC
* * ** * *
10417157 GTGGCGTTGGGGTTCCGGCAATCGAGGGGTCGGAGGGATCGGGGGAGGGTGTGCGCACATTATGT
312 GCGGCATTGGGGTTCC-G--A-CGA----TCGG-GGGGGC-CGGG-GGGTGTGCGCACATGATGT
* ** ** *
10417222 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTTAAAAACTCA
366 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
10417287 CACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
431 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
10417352 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
496 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
10417417 TTGCATGCCAACAAAAATACAAGGATCATGTTTACGAAGTTTGGGGCCAAAACACCTTCCAAAAA
561 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
*
10417482 AATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
625 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
10417547 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGC
690 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * *
10417612 ATTTGCACACAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
755 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
10417677 GCATCCCGTCTCTCTGGCTGGCGTAGT----G-CCCGCCCGCCCGCTCGTTTAGTCGGTTAGCTT
820 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
10417737 AG
885 AG
* * * *
10417739 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACTAAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGGCAGCAGGATCGGCA
* ** * * *
10417804 GCACACAGAGTGGGACTCGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGG-TCGACTGAGCG
66 GCACGCAGAG-GGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCG
* * * * *
10417868 CCTGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * ** * *
10417933 GTTCATTCCCAGTCTAAGATCGAATCGGGTCGAGGGTTAGACGACAGCACATGCTGGGCTCAGGC
194 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT-G-CGGCAGCACATGCTGGGCTCGGGC
* * * * * *
10417998 ATGTGCTGGTG-AAGTATTTTTCTTCGTCGGGGCACCATTGCTGAAGAACCTGATCGACGGCATT
257 ATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCG-CGGCATT
* * *
10418062 GGGGTTCCGACGATCGGGGTGGCCGGGGGGTGCGCGCACATGATGTGCAATGGGTGCTGGTACTT
320 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
10418127 -GCCCTTAGATTTGGCCCGCCTATCCCTCATCAAACCTCG-GAACTCACA-CCCCTTAAAGAGCA
385 GGCCCTTATA-TTGGCCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
10418189 TTTGAGATTTTACA-G---GCTGCC--T-GCC----AAGTG-AT-AAAT-GGGACA-------CA
448 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
10418233 AATGGT--C--AATCTTG-----TTCAAATTTTT-G-TGAA--ATTTT-TCCATGCC-A-AAAAA
513 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
10418282 TACAAGGATCAGGTTTATCAAAGTTT-GGG-CAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCC
578 TACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCC
* *
10418344 AAACCGTGCAAAAA-TTTC--AAATCAACGAAAAATAGAAAACGAGTCGTCTTGCGATGAAACTT
641 AAACC--GCAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
10418406 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCA-TGGCACACAGA
703 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
10418470 AATATGAAGATGCGCCTAAACCCACCTACCACCATATCAATCCACGGCTTGCGCATCCCGTCTCT
768 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
10418535 CTGGCCGACGTAGTGCCCG-CCCGCCCGCCCGCTCCTTTCGTCGATTGGGTTAG
833 CTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
10418588 GCATACGTAGTTCATTCCCAGTCTAAGATC-GAACCGAA-CTGAGGGTTACGGTAGTAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCAG-GGGTTGCGGCAGCAGGATCGG
* * *
10418651 CAGCACACAGAGCGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-TCGGCTAAG
64 CAGCACGCAGAG-GGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAG
* * *
10418715 CGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG-AT-C-
127 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
10418777 -AG---------A-TC--------GA---G-CTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
192 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * *
10418819 ATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCGCCATCGCCAGAGAACCTGACCGACGGTATTG
257 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCG-CGGCATTG
** * *
10418884 GGGTTTTGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTG
321 GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
10418949 GCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
386 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
10419014 GAGATTTTACTGGTATGC-GACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
451 GAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
10419078 TGGTCACAAAATCTTGTACAC
515 TGGTCACAAAATCTTGTACAC
10419099 AAGTCGTCTT
Statistics
Matches: 10402, Mismatches: 1176, Indels: 897
0.83 0.09 0.07
Matches are distributed among these distances:
820 21 0.00
821 149 0.01
822 35 0.00
823 8 0.00
824 1 0.00
825 1 0.00
826 4 0.00
827 1 0.00
828 1 0.00
829 3 0.00
833 5 0.00
834 1 0.00
835 6 0.00
836 7 0.00
843 8 0.00
845 89 0.01
846 117 0.01
847 17 0.00
848 33 0.00
849 200 0.02
850 7 0.00
851 4 0.00
853 5 0.00
854 1 0.00
855 12 0.00
856 4 0.00
857 734 0.07
858 5 0.00
860 9 0.00
861 179 0.02
862 264 0.03
863 66 0.01
864 70 0.01
865 1 0.00
866 2 0.00
867 6 0.00
868 439 0.04
869 213 0.02
870 7 0.00
871 95 0.01
872 115 0.01
873 815 0.08
874 18 0.00
875 3 0.00
876 10 0.00
877 201 0.02
878 23 0.00
879 257 0.02
880 468 0.04
881 15 0.00
882 11 0.00
883 5 0.00
884 9 0.00
885 36 0.00
886 58 0.01
887 30 0.00
888 6 0.00
889 85 0.01
890 32 0.00
891 468 0.04
892 817 0.08
893 496 0.05
894 368 0.04
895 10 0.00
896 6 0.00
897 115 0.01
898 15 0.00
899 32 0.00
900 4 0.00
901 211 0.02
902 326 0.03
903 199 0.02
904 328 0.03
905 760 0.07
906 260 0.02
907 259 0.02
908 53 0.01
909 1 0.00
910 1 0.00
911 102 0.01
912 110 0.01
913 235 0.02
914 3 0.00
917 5 0.00
918 2 0.00
921 1 0.00
922 1 0.00
923 177 0.02
924 4 0.00
925 1 0.00
926 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGCGGCATTGGGGTT
CCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCAAACCGCAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:10410826 original size:26 final size:26
Alignment explanation
Indices: 10410796--10410848 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10410786 GTTGACTTAG
10410796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10410822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10410848 G
1 G
10410849 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10411740 original size:26 final size:26
Alignment explanation
Indices: 10411700--10411752 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10411690 GTTGACTTAG
10411700 GCATACGGATATCATTCCCAGTCTAA
1 GCATACGGATATCATTCCCAGTCTAA
10411726 GCATACGGAGT-TCATTCCCAGTCTAA
1 GCATACGGA-TATCATTCCCAGTCTAA
10411752 G
1 G
10411753 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGATATCATTCCCAGTCTAA
Found at i:10415296 original size:26 final size:26
Alignment explanation
Indices: 10415267--10415319 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10415257 GTTGACTTAG
10415267 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
10415293 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
10415319 G
1 G
10415320 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:10417928 original size:26 final size:26
Alignment explanation
Indices: 10417898--10417950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10417888 GTTGACTTAG
10417898 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10417924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10417950 G
1 G
10417951 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10419487 original size:26 final size:26
Alignment explanation
Indices: 10419457--10419509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10419447 GTTGACTTAG
* *
10419457 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
10419483 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
10419509 G
1 G
10419510 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:10420383 original size:26 final size:26
Alignment explanation
Indices: 10420346--10420398 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10420336 GTTGACTTAG
*
10420346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10420372 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10420398 G
1 G
10420399 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10421266 original size:26 final size:26
Alignment explanation
Indices: 10421230--10421282 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10421220 GTTGACTTAG
*
10421230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
10421256 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
10421282 G
1 G
10421283 ATTGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:10423049 original size:868 final size:865
Alignment explanation
Indices: 10419641--10425240 Score: 4658
Period size: 868 Copynumber: 6.2 Consensus size: 865
10419631 ATAGGGGTCG
*
10419641 GGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
10419706 TCATCAAACCTCGAGAGCTCACACCCCCTTAAAGTGCATTTGAGATTTTATAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
10419771 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACG
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* **
10419836 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTC
196 AGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** * * *
10419901 AGTGAAAACTCCTTCTGAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
261 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGA
* *
10419966 AAAATAGAAAACAAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
326 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* **
10420031 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
391 TTTGCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * ** * * * **
10420096 CCCTATCGTTCCACGGCTTGTGCATCCTGTCTCT-TTGACCGACGTAGTGCCCGCCCGCCCGCCC
456 CACTATCGATCCATGACTTACGCATCCCGTCTCTCTAG-CCGACGTAGTGCCTGCCCGCTTG---
** ** * * * * *
10420160 ACCCACTCGTTTCGTCTGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGGTCAGATCAGA
517 -----CTCGTTTAATCCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGA
* * * * * * ** **
10420225 CCGAGGGTTGTGGCAGCATGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGAAC
576 CCGAGGGTTGCGGCAGTAGGATCAGCAGCACACAGAGGGGGACCTGGCCGATCCTTGGCTTGCGC
* * * *
10420290 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGA
641 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
10420355 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGATCGGATCGGATCGAG
706 GTTCATTCCCAG--T---C-T---AAG---A-T-----TG---GA-C----CGGA-C----CGAG
** *
10420420 GGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT-CTT--C--G-----
740 GGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTATTTGCCGGGCACCA
* ** * * * * **
10420475 T---CGGAGCATCATCAGAGAACCTGACCGACGGCATTGGGGTTCGACGATTAGGGGGGCCA
805 TCGCCGGAGTATCGCCGGAGAACCTGATCG-TGGCATTAGGGTTCGACGATCGGGGGGGCCA
* * * *
10420534 GGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTAGCCCTTATATT-GACCCCTTTCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
10420598 TAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAG
66 TCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
10420663 TAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * *
10420728 AGTTTTTTGCTGAA-TTTTTTGTGCACGCGAACAAAAATACAAGGATCACGTCTACAAAGTTTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
10420792 AGCCAAAACTCCTT-CTAAAACAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
261 GGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
* *
10420856 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTGTGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** *
10420921 ATTTACAAGCCATAAAAATGGCATTGGCATGCA-AAATATGAAGATGTGCCTAAACCCGCCTACC
390 ATTTGCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * ** * * **
10420985 ACCCTATCAATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTCCCCGCCCGCCCGCCC
455 ACACTATCGATCCATGACTTACGCATCCCGTCTCTCTAGCCGACGTAGT----GCCTGCCCGCTT
** *** * * * * *
10421050 GCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCAC-ACTCTAAGATCAGACCGAAC-T
516 GCTCGTTTAATCCATTGGCTTAGGCATACGGAGTTCATTC-CTAGTCTAAGATCGGACAGACCGA
* * * * ** *
10421113 GGGTTGCGGTAGTAGGATC-GACAGCACGCAGAGGGGGACCCGGCCGTTCCCCGGCTTGTGCATC
580 GGGTTGCGGCAGTAGGATCAG-CAGCACACAGAGGGGGACCTGGCCGATCCTTGGCTTGCGCATC
* * *
10421177 CCTCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
644 CCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC---G--
** * **
10421242 CATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATTGGATAGGACCAAGGGTTCCGG
704 -A-----AG--T-----T-C--A-TTC---CC-AGTCTAAGATTGGACCGGACCGAGGGTTGTGG
* * *
10421307 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCTACCATCGTCAG
748 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTATTTGCCGGGC-ACCA---TC--
* * * * * *
10421372 AGCATCGCCGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCTG-TGATCGGGGGGGC
807 -GC--CG--GAGTATCGCCGGAGAACCTGATCG-TGGCATTAGGG-TTC-GACGATCGGGGGGGC
10421436 CA
864 CA
*
10421438 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
10421503 TCATCATACCTCGAGAACTCACA-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 TCATCAAACCTCGAGAACTCACACA-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
10421567 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
10421632 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTA
195 AAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
*
10421697 GGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
*
10421762 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
10421827 ATTTGCAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
390 ATTTGCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
10421892 ACACTATCGATCCATGACTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCGCTTGCTC
455 ACACTATCGATCCATGACTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCGCTTGCTC
10421957 GTTTAATCCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGT
520 GTTTAATCCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGACCGAGGGT
* *
10422022 TGCGGCAGTAGGATCAGTAGCACACAGAGGGGAACCTGGCCGATCCTTGGCTTGCGCATCCCGCC
584 TGCGGCAGTAGGATCAGCAGCACACAGAGGGGGACCTGGCCGATCCTTGGCTTGCGCATCCCGCC
* ** *
10422087 CCTCTGGCCGACTGAGCACCCGCATTCTCGTTTCGTGGGTTGACTTAGGCATACTAAGTTCATTC
649 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
* *
10422152 CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGGTCGGGCATGTGCTGGT
714 CCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
10422217 GCTGCATTTTTATTTGCCAGGGCACCATCGCCGGAGTATCGCCGGAGAACCTG-TCGTGGCATTA
779 GCTGCATTTTTATTTGCC-GGGCACCATCGCCGGAGTATCGCCGGAGAACCTGATCGTGGCATTA
*
10422281 GGGTTCCGACGATCGGGGGGGCCG
843 GGGTT-CGACGATCGGGGGGGCCA
* * *
10422305 GGGGGTGTGCGCTCATGATCTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
10422370 TCATCAAACCTTGAGATCTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAG
66 TCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
10422435 TAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * * ** *
10422500 AGTTTTTAGTTGAATTTTTTTTTTGCACACCAACAAAAATATGAGGATTACGTCTACCAAGTTTG
196 AGTTTTTAGCTGAA-TTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
10422565 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
260 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATG
10422630 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
325 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
10422695 ATTTGCAAGCCATAACAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
390 ATTTGCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
10422760 ACACTATCGATCCATGACTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCGCTTGCTC
455 ACACTATCGATCCATGACTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCGCTTGCTC
10422825 GTTTAATCCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAGCAGACCGAGGGT
520 GTTTAATCCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGACCGAGGGT
*
10422890 TGCGACAGTAGGATCAGCAGCACACAGAGGGGGACCTGGCCGATCCTTGGCTTGCGCATCCCGCC
584 TGCGGCAGTAGGATCAGCAGCACACAGAGGGGGACCTGGCCGATCCTTGGCTTGCGCATCCCGCC
* *
10422955 CCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTC
649 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
10423020 CCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
714 CCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * *
10423085 GCCACATTTTTATTTGTCGGGGCACCATCGTCGGAGTATCGCCGGAGAACCTGATCGGTGGCATT
779 GCTGCATTTTTATTTG-CCGGGCACCATCGCCGGAGTATCGCCGGAGAACCTGATC-GTGGCATT
* *
10423150 AGGGTTCGAACGATCGGGTGGGCCG
842 AGGGTTCG-ACGATCGGGGGGGCCA
*
10423175 GGGGGTGTCTTCACCGGGGCACCATCACCGGAGAACCTGATCGGCGGTATTGGGGTTTCGACGAT
1 GGGGGTG---T-----GCGCA-CAT-------G-A--TG-T--GC-G-A-T-GGG--T-G-C--T
**** **** * * ** *** * ** * **
10423240 CGG-GGGGGGCCGAGGGGTGGTGTGCGCACATTATGTGTGATTGGTGCTGGTACTTTGCCGTTAT
34 -GGTACTTGGCC--CTTAT-AT-TG-GCCCCCTATCCCTCA----T-C--AAAC-CT--CGAGA-
* * * * * * * * ** * **** *** **
10423304 ATTGGCCCCCTATCCCTCATCA-AAC-CTCGAGAACTCACA--CCCCCTTAAAG-AG-CATTTGA
82 ACT--CACAC-A-CCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * * * *** * ** ** *
10423363 GAT-T-TTATA-GGTTTG-CTGCTAGTAGCCATTAAAGTGTC-TGAAAT-GGGGACACTTTTTTC
142 G-TGTCTGAAATGG--GGAC-ACT-TTTTTCA--AATG-GTCACAAAATCTTGTACAC----TTC
* * * * * * *
10423422 AAATGGTCACGAAATCTTGTACACGTCG-ACTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAA
195 -AA--GT-------T-TT-TA-GC-T-GAATTTTTTTG-TGCA-----CG-CCA--AC-A--AAA
* * ** * * *
10423486 ATACAAGAATCACGTCTACAAAGTTTGGGGTTAAAACTCCTTCCAAAAAAATTTTAAAACATCCT
233 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
10423551 GAACCGTAAGAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCAC
298 AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * *
10423616 ATGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATGAAAATGGCATTGGCA-AGCAAAAA
363 GTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACA-CAGAAA
* * * * *
10423680 TATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCATTG-CTTGCGCATCCCGTCACCC
427 TATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCA-TGACTTACGCATCCCGTCTCTC
* * ** * ** *
10423744 TGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
491 TAGCCGACGTAGTGCCTGCCCGCTTGCTCGTTTAATCCATTGGCTTAGGCATACGGAGTTCATTC
* * * * * * ** * *
10423809 CCACTCTAAGATCGGATCAGACTGAGGGTTGCGGTAGCAGGATC-GATAGCATTCAGAGAGGGAT
556 CTAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGTAGGATCAG-CAGCACACAGAGGGGGAC
* * ** * * * * *
10423873 C-GAGCCAATCCTCGGCTTGTACATCCCGTCCCTTTGGCTGGCAGAGCACCCGCAAGCTCGTTTC
619 CTG-GCCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * *
10423937 GTAGTTTGACTTAAGCATACGGAGTTCATCCTCAGTCTAAGCATACGAAGTTCATTGCTAGTCTA
683 GT-G---G------G--T--TGA---C-T--T-AG-----GCATACGAAGTTCATTCCCAGTCTA
* * * ** * *
10424002 AGATCGGATCGGATCC-AGGGTTGCGATAGTACATGCTGGGCTCGGGCATGTGCAGGTGC--CAT
722 AGATTGGACCGGA-CCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCAT
* ** * * *
10424064 ACTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGCATCGTCGGAGAACCTGA-CCTG
786 --TTTTATTTGCC-GGGCACCA---TC---G---C--CGGAGTATCGCCGGAGAACCTGATCGTG
* *
10424128 CGACATT-GGGATTCCGACGAT--AGGGGGCCGG
837 -G-CATTAGGG-TT-CGACGATCGGGGGGGCC-A
**
10424159 GGGGGTGTGCGCACATGATGTGC-AGTGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCC
1 GGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
10424223 CTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
10424288 GTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
10424353 AAGTTTTTAGCTGAATTTTTGTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
195 AAGTTTTTAGCTGAATTTTT-TTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
10424418 GGGGCCAAAACTCCTTCTG-AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
259 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
* * * *
10424482 GAAAAATAGAAAACGAGAT-GTCTTTCCATGAAACTTCAGGTGAAGGCTTAAGGCACCATTATAT
324 GAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** *
10424546 GAATTTACAAGCCAGGAAAATGGCATTGTAGCAC-GAGAAATATGAAGATGTGCCTAAACCCACC
388 GAATTTGCAAGCCATAAAAATGGCATTG--GCACACAGAAATATGAAGATGTGCCTAAACCCACC
* ** * * * * *
10424610 TACCACCCTATCGATCACCGGACTTGCACATCCCGTCTCTCTGGCCTACGTAGTGCCCGCCCCGT
451 TACCACACTATCGATC-CATGACTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTG---C--
* * *** * * *
10424675 CCGCCTGCCCGCTACGTTTCATCGGGTGCCTTAGGGCAT-CGGAGTTTCA-TCCCAGTCTGAGAT
510 CCG-CT---TGCT-CGTTTAATCCATTGGCTTA-GGCATACGGAG-TTCATTCCTAGTCTAAGAT
* * * * * *** *
10424738 CGGACCAGACCAAGGTTTGCGGTAGCAGGATC-GACAGCACGCAGAGGGGGACCCAACCGATCCC
568 CGGA-CAGACCGAGGGTTGCGGCAGTAGGATCAG-CAGCACACAGAGGGGGACCTGGCCGATCCT
** * * * *
10424802 CAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGACCTA
631 TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA-CT-
* *
10424867 GGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
694 ----TA--G-G--CA-T----A-C---G---A---AGTTCATTCCCAGTCTAAGATTGGACCGGA
* * * * * ** * ** *
10424932 TCGAGGGTTGCGACAACACATGCTAGGCTCGACCATGTGCTGGTGCCGCATTTTTCCTCGCC-GG
735 CCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTATTTGCCGGG
* * * *
10424996 -AGCA---CC-----ATCGCCGGAGAACTTGACCG-GCGACATTAGGGTTCCAACGATC-GGGGG
800 CACCATCGCCGGAGTATCGCCGGAGAACCTGATCGTG-G-CATTAGGGTT-CGACGATCGGGGGG
*
10425050 GCCG
862 GCCA
* * *
10425054 GGGGGCTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCC
1 GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
10425119 CTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
10425184 GTAGCCATTAAAGCGTTTGAATTGGGGACACTTCTTTCAAATCGTCACAAAATCTTG
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
10425241 CGCATCCCGT
Statistics
Matches: 3917, Mismatches: 505, Indels: 567
0.79 0.10 0.11
Matches are distributed among these distances:
866 3 0.00
867 218 0.06
868 596 0.15
869 23 0.01
870 36 0.01
871 2 0.00
873 3 0.00
876 2 0.00
878 3 0.00
879 126 0.03
880 7 0.00
882 1 0.00
883 5 0.00
884 115 0.03
885 4 0.00
886 50 0.01
887 4 0.00
889 3 0.00
890 76 0.02
891 193 0.05
892 148 0.04
893 52 0.01
894 16 0.00
895 41 0.01
896 180 0.05
897 3 0.00
898 2 0.00
899 2 0.00
900 5 0.00
901 6 0.00
902 11 0.00
903 98 0.03
904 71 0.02
905 379 0.10
906 283 0.07
907 123 0.03
908 3 0.00
909 3 0.00
910 3 0.00
911 4 0.00
912 6 0.00
913 2 0.00
914 6 0.00
915 5 0.00
916 11 0.00
917 216 0.06
918 19 0.00
919 14 0.00
920 12 0.00
921 14 0.00
922 7 0.00
923 4 0.00
924 2 0.00
926 2 0.00
928 2 0.00
930 2 0.00
931 3 0.00
932 7 0.00
933 13 0.00
934 12 0.00
935 11 0.00
936 13 0.00
937 18 0.00
938 4 0.00
939 3 0.00
940 2 0.00
942 1 0.00
943 3 0.00
945 1 0.00
946 1 0.00
947 11 0.00
948 394 0.10
949 4 0.00
950 1 0.00
951 2 0.00
952 4 0.00
954 1 0.00
955 1 0.00
956 1 0.00
958 4 0.00
959 2 0.00
960 1 0.00
962 4 0.00
964 1 0.00
965 3 0.00
966 1 0.00
967 1 0.00
968 2 0.00
969 2 0.00
972 3 0.00
973 1 0.00
974 86 0.02
975 5 0.00
976 4 0.00
977 2 0.00
980 1 0.00
981 1 0.00
983 8 0.00
984 13 0.00
985 32 0.01
986 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (865 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
AGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTGCAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CACTATCGATCCATGACTTACGCATCCCGTCTCTCTAGCCGACGTAGTGCCTGCCCGCTTGCTCG
TTTAATCCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACAGACCGAGGGTTG
CGGCAGTAGGATCAGCAGCACACAGAGGGGGACCTGGCCGATCCTTGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCC
AGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
TGCATTTTTATTTGCCGGGCACCATCGCCGGAGTATCGCCGGAGAACCTGATCGTGGCATTAGGG
TTCGACGATCGGGGGGGCCA
Found at i:10424100 original size:11 final size:11
Alignment explanation
Indices: 10424084--10424116 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
10424074 CCCGGGGCAC
10424084 CATCGTCGGAG
1 CATCGTCGGAG
10424095 CATCGTCGGAG
1 CATCGTCGGAG
10424106 CATCGTCGGAG
1 CATCGTCGGAG
10424117 AACCTGACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:10424898 original size:26 final size:26
Alignment explanation
Indices: 10424868--10424920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10424858 GTTGACCTAG
10424868 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
10424894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10424920 G
1 G
10424921 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10425500 original size:26 final size:26
Alignment explanation
Indices: 10425464--10425514 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10425454 TGACTTAGGC
*
10425464 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGAAGTTCATTCCCAGTCTAAGT
10425490 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
10425515 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:10427033 original size:903 final size:888
Alignment explanation
Indices: 10425270--10428456 Score: 3932
Period size: 900 Copynumber: 3.6 Consensus size: 888
10425260 CAACGTAGTG
* * * *
10425270 CCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGACCG
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* **** * * ** * * *
10425335 GACCTGACCGAGGGTGGTTACAACAGGATCGTTAGCACACAGAGGGGGACCCAGTCGATCCCTGG
66 GACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGG
* *
10425400 CTTGCGCAT-CCGCCCCTCTGGCCGGCTGCA-CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGG
131 CTTGCGCATCCCGCCCCTCTGGCCGACTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
10425463 CATACGGAGTTCATTCCCAGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACC
195 CATACGGAGTTCATT-CCAGTCTAAGTATACGAAGTTCATTACCAGTCTAAGATCGGACCGAACC
* * * * * *
10425528 AAGGGTTGTGGCAGCACATGCTGGGCTCTGGCATGTGCTGTTGCCGCATTTATCTTCGTCGGGGC
259 AAGGGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * * *
10425593 ACCATCGTCGGGGAACCTGACTGGCGGCATTGGGGTTTCGATGATC-GGGGGGCCAGGGGGTGTG
324 ACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTG
10425657 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
389 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
10425722 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCAAATAGCCATTA
454 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
10425787 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACAC-TTCGATTTTTTA
519 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTCGAGTTTTTA
* * *
10425851 GCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
584 GCTAAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
10425916 CTCCTCCCGAAAAAATTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
649 CTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGA
* * *
10425981 AAACGAGTCGCCCTGCCATGAAACTTTACGTGAAGGCTTAAGGTG-CCATTGTATGAATTTACAA
713 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAA
* ** *
10426045 GCCATAAAACTGTTATTGGCATGCAGAAATA-AGAAGATGTGCCTAAACCCACCTACCACCCTAT
777 GCCATAAAAATGCCATTGGCACGCAGAAATATA-AAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
10426109 CGATCCACGGCTTGGGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGC
841 CGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGC
*
10426157 CCACTTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
1 CC-C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * * * * *
10426222 TTGGACCAGACCGAGGGTTGCGGCAGTAGGATCAGCAGCACGTAGA-GGGGACCCGGTCGAT-TC
63 TCAGACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC
* * *
10426285 TCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTT
128 T-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
10426350 AGGCATACAGAGTTCATTTCCAGTCTAAGTATACGAAGTTCATTACCAGTCTAAGATCGGACCAA
192 AGGCATACGGAGTTCA-TTCCAGTCTAAGTATACGAAGTTCATTACCAGTCTAAGATCGGACCGA
* * ** *
10426415 ACCGAGGGTTGTGGCAGCACATACTGGGCTCGACCATGTGCTGGTGCCACATTTTTCTTCGTCTG
256 ACCAAGGGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* ** *
10426480 GGCACCATCGCCGGAGCATCATCGGAGAACCTGACTGACGGCATTAAGGTTCCGACGATCGGGGG
321 GGCACCAT---C---G-----TCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGG
* *
10426545 GGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCT
375 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
10426610 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCT
440 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
10426675 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
505 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
10426740 CTTTCGAGTTTTTAGCTAAATCTTTTTGTACAAGCCAACCAAAATACAAGGATCACGTCTACCAA
570 CTTTCGAGTTTTTAGCTAAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
10426805 GTTTGGGGCCAAAACTCCTTCCGAAAAACTTTTAAACAATCCCGAACCGTAAAAAGTTTTAAAAA
635 GTTTGGGGCCAAAACTCCTTCCGAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
* * *
10426870 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACAATTG
699 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
10426935 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCAC
764 TATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCAC
* * *
10427000 TTACCACACTATCGATCCACGGCTTGCGCATCCCGTTTCTCTAGCCGGCGTAGTGCCCG-
829 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGC
* *
10427059 CCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
1 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
10427124 GACTAGACTGAGGGTTACGATAGCAAGATCGGCAGCACGCAGAGGGGTACCCGGCCGATCCCTGA
66 GACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGG
* * * * *
10427189 CTTACGCGTCCTGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCTTGGGTTGACTTAGGC
131 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * * *
10427254 ATATGGAGTTCATTCTCAGTCTAAGCATACGAAGTTCATT-CCGAGTCTAACATCGGACTGGACA
196 ATACGGAGTTCATTC-CAGTCTAAGTATACGAAGTTCATTACC-AGTCTAAGATCGGACCGAACC
* * * **
10427318 AAGGGTTACGGCACCACATACTGGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCGTCGGGGC
259 AAGGGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * *
10427383 ACCATCGCCGGAGCATCGCCAGAAAACCTGACCGATGGCATTGGGGTTCCGATGATCGGGGGGGT
324 ACCAT---C---G--TCG---GAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGC
10427448 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
378 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
10427513 CCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGTATTTGACATTTTACAGGTTTGCTGCC
443 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
10427578 AGTAGCTATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACT
508 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACT
* * *
10427643 TT-GAGTTTTTTGCTGAATTTTTTTTTTGTGGCATG-CAACAAAAATACAAGGATCACTGTCTAC
572 TTCGAGTTTTTAGCT-AA--ATCTTTTTGT-GCATGCCAACAAAAATACAAGGATCAC-GTCTAC
* * * *
10427706 C-TGTTTGGGGCC-AAACTCCTTCCCGAAAAAATTTAAAAAATCTCGAACCGTTAAAAG-TTTAA
632 CAAGTTTGGGGCCAAAACTCCTT-CCGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAA
* * *
10427768 AAATCATGAGAAATATAGGAAACGAGTCAATCTAGCCATGAAAC-TCACG-GAAGGCTTAAGGGA
696 AAATCATGA-AAA-ATAGAAAACGAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
10427831 CCATTG-ATGCATTTACAAGCCAT-AAAATGCCATTGGCAACTCA-AAAT-TGAAGATGTGCCTA
758 CCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGC-ACGCAGAAATATAAAGATGTGCCTA
* * * * *
10427892 AACGCAACCTACCACGCCTATCGATCCACCG-TTTCGCATCTCGTCTCTCTAAGCCAGCGTAGTG
822 AAC-CCACCTACCAC-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-AGCCGGCGTAGT-
*
10427956 GCCCCACCC
883 G--CC-CGC
* * * * *
10427965 GCCCGCCCGCCCGCTCGTTTTCATCAGTTGGCTTAGGCATACGGAGATCATTCCAAGTTTAAGAT
1 -CCCGCCCGCCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
10428030 TAGACCAAACTGAGGGTTACGGCAGTAAGATCGGCAGCACGTAGAGGGGGAGCCGACCGATCCTT
64 CAGACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCT
* * * * * *
10428095 GGCTTGAGCATCCCACCCCTCTGGCCGGCTGAACGCTCGCACGTTTC-TTTCGTGGGTTGACTTA
129 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGACTTA
* *
10428159 GGCATACGGAGTTCATTCC---C--A--AT-C-----T-A--A-GA-TC--AGACCGGACCG---
193 GGCATACGGAGTTCATTCCAGTCTAAGTATACGAAGTTCATTACCAGTCTAAGATCGGACCGAAC
* * * * *
10428201 --AGGGTTAAGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGG
258 CAAGGGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* ** * * *
10428264 CACCATCGTCGGGGAACCTGACCGGTGGAATTGGGGTTCTGATGATCGGGGGGGCCGGGCGGTGT
323 CACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGT
* *
10428329 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAA
388 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
10428394 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
453 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
10428457 CCTACCACCC
Statistics
Matches: 2022, Mismatches: 225, Indels: 122
0.85 0.09 0.05
Matches are distributed among these distances:
871 168 0.08
874 3 0.00
876 1 0.00
879 1 0.00
882 60 0.03
887 10 0.00
888 3 0.00
889 27 0.01
890 256 0.13
891 2 0.00
893 2 0.00
894 1 0.00
896 1 0.00
897 5 0.00
899 113 0.06
900 452 0.22
901 112 0.06
902 254 0.13
903 344 0.17
904 27 0.01
905 1 0.00
907 16 0.01
908 161 0.08
909 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (888 bp):
CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGG
CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCAGTCTAAGTATACGAAGTTCATTACCAGTCTAAGATCGGACCGAACCAA
GGGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAC
CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTCGAGTTTTTAGC
TAAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGCCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGC
Found at i:10428744 original size:26 final size:26
Alignment explanation
Indices: 10428714--10428766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10428704 GTTGACTTAG
10428714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
10428740 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10428766 G
1 G
10428767 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10430513 original size:26 final size:26
Alignment explanation
Indices: 10430483--10430535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10430473 GTTGACTTAG
*
10430483 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10430509 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10430535 G
1 G
10430536 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10433261 original size:26 final size:26
Alignment explanation
Indices: 10433212--10433261 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10433202 TTGACTTAGG
* *
10433212 CATATGGAGTTCATTCCTAGTCTAGC
1 CATACGGAGTTCATTCCCAGTCTAGC
*
10433238 CATACGGAGTTCATTCCCATTCTA
1 CATACGGAGTTCATTCCCAGTCTA
10433262 AGATCAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAGC
Found at i:10435055 original size:26 final size:26
Alignment explanation
Indices: 10435026--10435078 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10435016 GTTGACTTAG
10435026 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
10435052 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10435078 G
1 G
10435079 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10435947 original size:905 final size:899
Alignment explanation
Indices: 10428454--10437493 Score: 10910
Period size: 895 Copynumber: 10.1 Consensus size: 899
10428444 CTGCCAGTAG
* * *
10428454 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGTGTAATGCCCACC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC
* * * ** ** *
10428519 AGTCCACCCACCCGCTTGTTTTATCGGTTGGCTTAGGTGTACGGAGTTCATTCCTAGTCTAAGAT
63 -GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * ** * * *
10428584 TGGACCGGACCAAGGGTTACAGTAGCAGGATC-AGCAGCACACAGAGGGGGACCTGGCCGATGCC
127 CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAGGGGGACCCGACCGATCCC
* * * * ** * * *
10428648 TGGCTTGCGCATCCCGCCCTTCTAGTCGGCTGAGCGCCTACACGGTTGTTTCATGGGTTGACTTA
191 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
10428713 GGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATTGGACCAGA
256 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
* ** * * * * *
10428778 CCGAGGGTTGCGATAGCACATGTTGGGCTTGGGCATGTGTTGGTGCTGCATTTTTCTTCTTCGGG
321 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
10428843 GCACCATCG-CTGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGCTTTCGACGATCGGGGG
386 GCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
* * *
10428907 G-CTGAGGGGGTGTGTGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
450 GCCGGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
10428971 TATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGC
514 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
10429036 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
579 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
10429101 ACTTTGAGTTTTTAACAGAAATT-TTTTGTGCATGCCAACAAAAATAGAAAGATCACGGCTACCA
644 ACTTCGAGTTTTTAGCTG-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * ** **
10429165 AGTTTGGGGCTAAAACTCCATCTGAAAAAATTTTAAAAAATCCCCAACCACAAAAAGTTTTGAAA
708 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * * * **
10429230 ATCGTGAAAAATAAAAAATGAGTCGTCTTGCCTTGAAGCTTCACGTGAAGGCTTAAACGACCATT
773 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
**
10429295 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
838 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
*
10429357 CCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
**
10429422 CG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
66 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * * * * *
10429483 CCGAACCGAGCATTGCGGCAGCAGGATTGATAGCACGTAAAGGGGGACTCGACCGACCCCCGACT
131 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* * * * * ** *
10429548 TGCGCATCCC-CCCTTCTGGCCGACTGAGCGCCCACACGTTCATTTTATGGGTTGACCTAGGCAT
196 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
10429612 ACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTATAAGATCGGA-CTAGACCGA
261 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGA
* * * *
10429676 GGGTTACGGCACCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCAC
325 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* *
10429741 CA---T-----CA---TCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGCCCGG
390 CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* *
10429795 -GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGTCCCCCTATCCC
455 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
10429859 TAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCTAG
520 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
10429924 TAGCCATTAAAGTGTCTAAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
585 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
10429989 AGTTTTTAGCTAAATTTTTTTATGAATGCCAACAAAAAAACAAGG---A----T--C-A---T--
650 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * *
10430039 -GCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGGTTCGAAAATCATGA
715 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
** * *
10430103 AAAATAGGGAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTTTGAA
780 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * *
10430168 TTTACAAGCCATAAAAAAGGAATTGGCATGTAGAAATATGAGGATGTGCCTAAGC
845 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * *
10430223 CCACCTAGCACCCTATTGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
10430288 CGCCCGCCAAC-CTATTCATTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGA
66 CGCCCACC--CGC---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * * *
10430352 TTAGACTGGACCAAGGGTTACGGTAGTAGTATCAACAGCACGCAGAGGGGGACCCGACCGATCCT
126 TCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCC
* * * ** * * * *
10430417 CAGCTTACGCATCCTGCCTTTTTGGCCGGCTGAGTGCCTGCACGCTCGTTTCATGGGTTGACTTA
191 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
10430482 GGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGGATTGGA
256 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
* * **
10430547 CCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAG
321 CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * ** *
10430612 GCACCATCGTCGGAGCATCGTTGGAGAACCTAACCGACGGCATTGGGGTT-AAAGTGATCGGGGG
386 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGG
* * * *
10430676 GCCAGGGGGGGTGTGCACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCTC
450 GCC-GGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
10430741 TATCCCTCACCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
514 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
10430806 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
579 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * **
10430871 ACTTTGAGTTTTTAGTTGAATTGTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCTAAGAA
644 ACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCA
* * * *
10430936 AGTTTGGGACCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
708 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
10431001 ATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
773 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* ** * * * *
10431066 CTATGAATTTACAAGATATAAAAATAGCATTGGTACATAGAAATATAAAGATGTGCCTAAAC
838 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * * *
10431128 CCACCTACCACCCTATCGATCCACGACTTACGTATCCTGTCTCTCTAGCCGGCGTAGTGCCCG-C
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * ** * **
10431192 TGGCCA---GCTCGTTTCGTCGGTTAGCTTAGGTATACAAACTTCATTCCCAGTCTAAGATTGGA
66 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
10431254 CTGGACCGAGGGTTACGGTAGCAAGATC-AGCAACACGTAGAGGGGGACCCGGCCGATCCCTGGC
131 CCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAGGGGGACCCGACCGATCCCCGGC
* * * *
10431318 TTGCGCATCCTGCCCCTCTAGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
195 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
10431383 TACAGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCCCCGTCTAAGATCGGA-CTGGACCG
260 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCG
* * * * * **
10431447 AGGGTTATGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCATTCTTCTTCGCCAAGGCA
324 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** * * *
10431512 CCATCGTCGGAGCATCCCCAGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCC
389 CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
* * * * *
10431577 AG-GGGGTGTGCCCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATC
453 GGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
10431641 CCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGTATTTCAGATTTTACAGGTTTGCTGCC
518 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
10431706 GGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTT
583 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
10431771 CGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTGCCAAGTTT
648 CGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * ** * *
10431836 AGGGCCAAAACTCATAT-CGAAAAAATTTAAAAAAATCTAGAATCGTAAAAGGTTTCAAAAATCG
713 GGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
10431900 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
777 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
10431965 GAATTTACGAGCCATAAAAATGTCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
842 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
10432023 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAAT----GCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
10432084 CGCCCACCCGCTCGTTTCATCAGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGA
66 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * ** * *
10432149 CCGGACCGAGGGTTATGGTAGCAGGATCGGCAGCATGTAGAGAGGGACATGACTGATCCTCGGCT
131 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* * ***
10432214 TACGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAAAAAT
196 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * * **
10432279 ACGAAGTTTATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACTAAG
261 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
* * * * * * *
10432344 GGTTACGGTAGCACATGTTGGGCTCAGGCATGTGATGGTGTCGCATTTTTCTTCGACGGGGTACC
326 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* **
10432409 ATCG-CTGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCCGG
391 ATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* * *
10432473 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCTC
455 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
10432538 TCATCAAACCTCAACAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAG
520 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
10432603 TAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCG
585 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
10432668 ATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
650 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *** *
10432733 GGCAAAAAATCCTTTCGAAAAAATTTTAAAAAATTTTGAACCGCAAAAAGTTTCAAAAATCGTGA
715 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
10432798 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAA
780 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
10432863 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCATAAAC
845 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * **
10432918 CCACCTACCACCCTATCGATCCACGGCTTGCACGTCCCGTCTCTCTGGCCGATGTAGCGCCCTCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G---T--
* * * * **
10432983 CGCCAGCCCGCCCGCCCACCCGTTT-GATCTTTTTTTTGGCTGATTTAGGCATACGGAGTTCATT
59 -GCCCGCCCGCCCACCCGCTCGTTTCG-TC----GGTTGGC----TTAGGCATACGGAGTTCATT
* * * * * * * * *
10433047 CCTAGTCTAGGA-CTGGACTGGACCGAAGGTTGCGGTAGCAGGATTGGCAGCATGTAGAGGGGGA
114 CCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* *
10433111 CCCGGTCGATCCTCGGCTTGCATATTCTGATCCTCGACTTGCGCATCCCGCCCCTCTGGCTGGCT
178 -CC---CGA----C--C--G---A-TC----CC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
10433176 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCT-AGCCA
222 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-CA
* * * *
10433240 TACGGAGTTCATTCCCATTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTC
286 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
* * * **
10433305 GAGAATGTTGCT-GTGCCGTATTTTTCTTCGTCGTGGGCACCATCGTCGGAGCATGCACCGGAGG
351 GGGCATG-TGCTGGTGCCGCATTTTTCTTCGTCG-GGGCACCATCGTCGGAGCAT-CGTCGGA-G
* * ** **
10433369 AACCTGACCGGCGGGCATTAGGGTTTCGGTGATCGGGGGGCCCGGA-GTATGTGCGCCACATGAT
412 AACCTGACCGGC-GGCATTGGGGTTCCGACGATCGGGGGG-CCGGAGGGGTGTGCG-CACATGAT
* ** * *
10433433 GTGTGATGGGTGCTCCTAACGGTTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAAACTCGGC
474 GTGCGATGGGTGCTGGT-AC---TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-G-
*
10433498 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
533 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
10433563 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAACTGA
598 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
10433628 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCAT
663 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* **
10433693 TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
728 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
10433758 AGTCGTCTTGCCATGAAACTTCACATGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
793 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
10433823 AAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
858 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
10433865 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACTTAGTGCCCGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* *
10433930 CGCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
66 CGCCC--AC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
10433995 CAGACCAGG--CGAAGGGTTGAGGCAGCAAGATCGGCAACACGTAGAGGGGGACCCGACCGATCC
127 CAGACC-GGACCG-AGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCC
* * * * * * ** *
10434058 CCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTAAACGCCAGC-CTCTCATTTTATGGGTTGATTT
190 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * ** *
10434122 AGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTTGTCTAAGATCAGATCGG
255 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
* * * * **
10434187 ACCGAGGGTTGCGACAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCACCGG
320 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * *
10434252 GGCATCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT-CTAGCGATTGGGG
385 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGA-T-CGG
**
10434316 GGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATTTGTGCTGGTACTTGGCCCTTATATTGGCC
447 GGGGCCGGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
10434380 CCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
511 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * * *
10434445 TGCTACTAGTAGCCACTAAAGTGTCCGAAAATGGGGACACTTTTTTAAAATGGCCACAAAATCTT
576 TGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
10434510 GTACACTTCGAGTTTTTAGCTGAAGTT-TTTTGTGCATGCCAACAAAAATAAAAAGATCACGTCT
640 GTACACTTCGAGTTTTTAGCTGAA-TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* ** * * * * *
10434574 ACCAAGTTCGGGGATAAAACTCCTTCCGAAAAAATTTTAAAAAATTCAGAATCGCAAACAGTTTC
704 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
*
10434639 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
769 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** ** *
10434704 CATTGTATGAATTTACAAGCCATAAAAATGTAATTGGCACACAGAAATATGAATATGTGCCTAAA
834 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
10434769 C
899 C
* * * *
10434770 CCACCTACCACCCTATCGATCTATGGCTTGCGCATCCCGTCTCTTTGGCCGGCGAAGTGCCCGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
10434835 CGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
66 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * * ** * *
10434900 CTAGACCAAGGTTTGCGACAGTAGGATCGGCAGCACACAGAGGGGGACCCAACCGATCCTCGGCT
131 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
10434965 TGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCAT
196 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
10435030 ACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAG
261 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
* * ** * *
10435095 GGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTACTGCCGTATTTTTCTTCATCGGGGCACC
326 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* ** * * * *
10435160 ATTG-CTGGAGCATCACCGGAGAATCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGCCGG
391 ATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* * *
10435224 AGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCC
455 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * ** * *
10435289 TCATCAAACCTTGAGAACTTACACATCCTTAATGAGCAGTTGAGATTTTACAGGTTTGCTGCCAG
520 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
10435354 TAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCAAAGGGTCACAAAATCTTGTACACTTCG
585 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
10435418 AGTTTTTAGCTGAATTCTTTTATGCATGCCAA-ATAAAATACAAGGATCATGTCTACCAAG-TTA
650 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTG
* * *
10435481 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCATG
714 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
10435546 AAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TCGACATGAAGGCTTAAGGGACCATTGTATG
779 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATG
** *
10435610 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTGAAC
843 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* *
10435667 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGAC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--C
* * * * *
10435732 CGCCCGTCCGCCCACCCGCTCGTTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCGAATCTA
62 CG--C--CCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * * *
10435797 AGATCAGACCAAACTGAGGGTTGCAGCAGTAGGATCGACAGCACATAGTGGGGGACCCAGA-TGA
123 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCC-GACCGA
* * * * * *
10435861 TCCCCTGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCACCCACACGCTCATTTCGTGGGTTGA
187 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * **
10435926 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGCAGATCATTCCCAGTCTAAGATCAAAT
252 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * * * *
10435991 CAGACTGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTC-CATTTTTCTTCA
317 CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTCG
** * ** * *
10436055 TCGGGGTGCCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCG
381 TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-
*
10436120 GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGC
445 GGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
10436184 CCCCTATCCCTCATCAAACCTCGAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
510 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
10436249 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTT
575 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * **
10436314 GTACACTTCGAGTTTTTAGCTAAATTATTTTATGGATGCCAACAAAAATACAAGGATTATATCTA
640 GTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
10436379 CCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTGT-AAAAATCTCGAACCGCT-AAAAGTTTC
705 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTC
*
10436442 AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
769 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
10436507 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
834 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
10436572 C
899 C
* * * *
10436573 CCAACTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCAGCGTAGT----GCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* *
10436634 CG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGACCAGA
66 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * * * *
10436695 CCAAATCGAGGGTT-AGGCAGCAGG-TAGACAGCACGCAAAGGAGGACCCGACTGATCCCCGGCT
131 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
*
10436758 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTCGTGGCTTGACTTAGGCAT
196 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
** *
10436822 ACGGAGTTCATTCATAGTCTAAG-AT-C---G---A-----A--C-----T--GA----ACTGAG
261 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
** * * * * * *
10436861 GGTTGTGGCAGCACATGCTGGTCTCAGGCAGGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACC
326 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * *
10436926 ATCGCCGGAGCATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCC-GA
391 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGA
10436990 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
456 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * *
10437054 TATCAAACATCGAGAACTCACGCCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGT
521 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
10437119 AGCCATTAAAGTGTCTGAAATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-A
586 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
10437183 TGTTTTTAGCTGAATTGTTCTGTGGATGCCAACAAAAATACAGGGATCACATCTTCCAAGTTTGG
651 -GTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
10437248 GGCCAAAACTCCTTACGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGA
715 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * *
10437313 AAAATAGAAAATGAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAA
780 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
10437378 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
845 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * * *
10437433 CCACCTACCACCCTATCCATCCACGGCTTACGCATCCCCTCTCTCTGGCCGACGTAGTGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
10437494 TGCCTGCTCG
Statistics
Matches: 7050, Mismatches: 915, Indels: 384
0.84 0.11 0.05
Matches are distributed among these distances:
858 1 0.00
859 213 0.03
860 261 0.04
861 105 0.01
865 1 0.00
866 220 0.03
867 1 0.00
869 1 0.00
870 2 0.00
871 1 0.00
872 3 0.00
873 1 0.00
874 106 0.02
875 160 0.02
878 1 0.00
879 2 0.00
881 4 0.00
882 214 0.03
883 42 0.01
884 2 0.00
885 2 0.00
886 41 0.01
887 44 0.01
888 286 0.04
889 7 0.00
890 64 0.01
891 2 0.00
892 5 0.00
893 1 0.00
894 171 0.02
895 1085 0.15
896 232 0.03
897 542 0.08
898 93 0.01
899 17 0.00
900 143 0.02
901 139 0.02
902 182 0.03
903 58 0.01
904 70 0.01
905 1012 0.14
906 333 0.05
907 49 0.01
908 1 0.00
909 17 0.00
910 36 0.01
911 22 0.00
912 23 0.00
913 120 0.02
914 37 0.01
915 74 0.01
916 1 0.00
919 4 0.00
920 1 0.00
923 2 0.00
925 1 0.00
927 2 0.00
930 1 0.00
931 5 0.00
934 4 0.00
935 67 0.01
936 160 0.02
937 20 0.00
938 5 0.00
939 29 0.00
940 32 0.00
941 27 0.00
942 5 0.00
943 8 0.00
944 1 0.00
945 36 0.01
947 390 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGA
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
Found at i:10438844 original size:26 final size:26
Alignment explanation
Indices: 10438808--10438859 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
10438798 GTTGACTTAG
*
10438808 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10438834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10438860 TATTGAACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10440644 original size:26 final size:26
Alignment explanation
Indices: 10440608--10440660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10440598 GTTGACATAG
10440608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10440634 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10440660 G
1 G
10440661 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10441308 original size:891 final size:884
Alignment explanation
Indices: 10438642--10441551 Score: 3885
Period size: 907 Copynumber: 3.2 Consensus size: 884
10438632 GTGCTGACAA
* * **
10438642 GCATAC-GAGTTCATTTCCCAGGTTCTAAGATTAGATCCCGGATCCGAGGGGTTGTGACAGCAGG
1 GCATACGGAGTTCA-TTCCCA-G-TCTAAGATCAGAT-CCAGA-CCGA-GGGTTGTGGTAGCAGG
* * * *
10438706 CATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGTATCCCGCCCCTCTGGCTGG
60 -ATCGGTAGCAC--AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * **
10438771 C-GAAGCGCCTGCACGGTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
122 CTG-AGCACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* ** * * *
10438835 CATACGGAGTTCATTCCCAGTCTAATATTGAACCGGACTGATGGTTACGGCAGTACATGCTAGGC
186 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC-GA-GGTTTCGGCAGCACATGCTGGGC
* * *
10438900 TCGGGCATGCGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTGATCGACG
249 TCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGATCGACG
* * * *
10438965 ACATTGGGGTTCCGACGATCGGGGGGGCCGTGGGGGGTGTACACACATCATGTGCGATGGGTGCT
314 GCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
* * * **
10439030 AGTACATGGCCCTTTATTGGCCCCCTATCCCTCATCAAATGTCGAGAACTCACACCCCCTTAAAG
378 GGTACTTGGCCCTTTATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
10439095 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTT
443 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTT
*
10439160 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCA
507 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AA
*
10439225 AAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
571 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAATTTTAAAAAAT
* *
10439290 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTT
635 CCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
10439355 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCACGCAGA
700 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGA
10439420 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
765 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
10439485 CTGGCCGACGTAGTGCCCGCTCGCCCG-TCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
830 CTGGCCGGCGTAGTGCCCGCCCGCCCGCTC-G-CC-CTCGTTTCGTCGGTTGGCTTAG
* * * **
10439542 GCATACGGAGTTCATTCCCAGTCTAAGATGAGAT-TAGACCGACGGTTGTGGTAGCAGGATTAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCAGACCGAGGGTTGTGGTAGCAGGATCGGT
* * * * * *
10439606 AGCACATAAAAGGGGACCCAACAGATCCCCGGCTTACGCATCCCGCCCCTCT-GCCTGGCAGAGC
66 AGCAC--AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGC
* *
10439670 ACCCGCATGCT-AGTTTCC-TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCTTAC
128 ACCCGCACGCTCA--TTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
10439733 GGAGTTCATTCCCTGTCTAAGATCAGACCGAACCAAGGGTTGT-GGCAGCACATGCTGGGCTCGA
191 GGAGTTCATTCCCAGTCTAAGATCAAACCGGA-CGA-GGTT-TCGGCAGCACATGCTGGGCTCGG
** ** * ** *
10439797 GCATGTGCTGGTGCTGCATTTTTCTTCGTCGCGGCACCATCGCCGGAGCATCATCAGAGAACCTG
253 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAG-A--A-C-CTG-ATC-G
10439862 ACCGGCGATATTGGGGTTCCGACGATCGGGGGGGCCGAAGGGGGTGTGTGCACACATGATGTGCG
311 A-CGGC---ATTGGGGTTCCGACGATCGGGGGGGCC--AGGGGG-GTGTGCACACATGATGTGCG
*
10439927 TTGGGTGCTGGTACTTGGCCCTTGTATT-GGCCCCATATCCCTCATCAAACCTCGAGAACTCACA
369 ATGGGTGCTGGTACTTGGCCCTT-TATTGGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACA
*
10439991 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATA
432 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AATG
* *
10440056 GGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGT
496 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
10440121 GCATGCCAAAAAAAATATAAGGATCACGTTTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAA
561 GCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC-CAAAAAA
* * * * *
10440186 TTTTAAAAAATCCCCAACCGTAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACAAGTCATCTTG
624 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
10440251 CCATGAAACTTCACGTGAAGGCTTAAGGAACCATTATATGAATTTACAAGCCATAGAAATGGCAT
689 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
10440316 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCAC-ATCGATCCACGGCTTGCG
754 TGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATCCACGGCTTGCG
* * *
10440380 CATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCTTCCTCGTTTCATCGGTTGGC
818 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGC--CCTCGTTTCGTCGGTTGGC
10440445 TTAG
881 TTAG
* * *
10440449 GCATATGGAGTTCATTCCCCA-TCTAAGATCAGATCGA-ACCGAGGGTTGTGGTAGTAGGATCGG
1 GCATACGGAGTTCATT-CCCAGTCTAAGATCAGATCCAGACCGAGGGTTGTGGTAGCAGGATCGG
* *** * *
10440512 TAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATATGGCCCCTCTGGCCGACTGAGT
65 TAGCA--CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
10440577 GCCCGCACACTCATTCCGTAGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGG
128 ACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
* * *
10440642 AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGAGTTTCGACAACACTTGCTGGGCTCGGGCA
193 AGTTCATTCCCAGTCTAAGATCAAACCGGA-CGAG-GTTTCGGCAGCACATGCTGGGCTCGGGCA
* * *
10440707 TGTGCTGGTGCCACATTTTTTTTCACCGGGGCACCATTGCTGGAGAACCTGATCGACGGCATTGG
256 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGATCGACGGCATTGG
* *
10440772 GGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTG
321 GGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
* *
10440836 GCCCTTATATTGGGCCTCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTT
386 GCCCTT-TATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
10440901 GAGAGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATTGGGGACACTTTTTTCAGAT
450 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA-TGGGGACACTTTTTTCAAAT
* **
10440966 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCACACCAAAAAAATACA
514 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACA
* *
10441031 AGGATCACATCTACCAAGTTT-GGGCACAAAAATCCTTCCAAGAAAATTTTAAAAAATCCCAAAT
579 AGGATCACGTCTACCAAGTTTGGGGC-CAAAAATCCTTCCAA-AAAATTTTAAAAAATCCCAAAC
* *
10441095 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTGGTCTTGCCATGAAACTTCACGTGA
642 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
10441160 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGA
707 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGA
* * * *
10441225 AGATGTGCCTAAACCCACCTACCACCCTATTGATCCACTGCTTGCGCATCCCGCCTCTCTAGCCG
772 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
10441290 GTGTATTGCCCACCCGCCCGC-C-CGCTCGTTTCGTCGGTTGGCTTAG
837 GCGTAGTGCCCGCCCGCCCGCTCGCCCTCGTTTCGTCGGTTGGCTTAG
* *
10441336 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CCAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCAGACCGAGGGTTGTGGTAGCAGGAT---C
* *
10441400 GGTA-CACAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
63 GGTAGCACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
10441464 ACCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGG
128 ACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
*
10441529 AGTTCATTCCTAGTCTAAGATCA
193 AGTTCATTCCCAGTCTAAGATCA
10441552 GATCAGACCG
Statistics
Matches: 1759, Mismatches: 203, Indels: 109
0.85 0.10 0.05
Matches are distributed among these distances:
886 5 0.00
887 197 0.11
889 3 0.00
890 13 0.01
891 256 0.15
892 200 0.11
893 201 0.11
894 19 0.01
895 4 0.00
896 30 0.02
897 1 0.00
898 13 0.01
899 7 0.00
900 16 0.01
901 12 0.01
902 1 0.00
903 1 0.00
904 28 0.02
905 5 0.00
906 52 0.03
907 680 0.39
908 14 0.01
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCCAGACCGAGGGTTGTGGTAGCAGGATCGGT
AGCACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
CGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAAACCGGACGAGGTTTCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTC
CGACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TTATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCGCTCGCCCTCGTTTCGTCGGTTGGCTTAG
Found at i:10441710 original size:26 final size:26
Alignment explanation
Indices: 10441681--10441733 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10441671 GTTGACTTAG
* *
10441681 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10441707 GCATCCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10441733 G
1 G
10441734 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10441744 original size:186 final size:185
Alignment explanation
Indices: 10441336--10441762 Score: 548
Period size: 186 Copynumber: 2.3 Consensus size: 185
10441326 GTTGGCTTAG
* * * * *
10441336 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACG
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCAACA
* * * * ** ** *
10441401 GTACACAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCAC
66 GCACACAGAGGGGGACCCAACCAATCCTCGGATTGCACATCCCGCCCCTCTAACCGACTGAGCAC
* *
10441466 CCGCACGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
131 CCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** *
10441521 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGTAGGATCAACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCAACA
* * * * *
10441586 GCACGCAGAGGGGGACCCAATCAATCCTCGGATTGCACATCTCGCCCCTCTAAATCGACTGAGCG
66 GCACACAGAGGGGGACCCAACCAATCCTCGGATTGCACATCCCGCCCCTCT-AACCGACTGAGCA
* * *
10441651 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
130 CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
10441707 GCATCCAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGTTTGCAGCAGCA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCA
10441763 CATGCTGGCC
Statistics
Matches: 207, Mismatches: 34, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
185 101 0.49
186 106 0.51
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCAACA
GCACACAGAGGGGGACCCAACCAATCCTCGGATTGCACATCCCGCCCCTCTAACCGACTGAGCAC
CCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:10448499 original size:26 final size:26
Alignment explanation
Indices: 10448463--10448515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10448453 GTTGAGTTAG
*
10448463 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
**
10448489 GCATACAGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
10448515 G
1 G
10448516 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:10449540 original size:26 final size:26
Alignment explanation
Indices: 10449511--10449560 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10449501 GCGTTGACTT
10449511 AGGCATACAGAGTTCATTCCCAGTAC
1 AGGCATACAGAGTTCATTCCCAGTAC
**
10449537 AGGCATATGGAGTTCATTCCCAGT
1 AGGCATACAGAGTTCATTCCCAGT
10449561 CTAAGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AGGCATACAGAGTTCATTCCCAGTAC
Found at i:10450425 original size:899 final size:896
Alignment explanation
Indices: 10448633--10455607 Score: 8232
Period size: 899 Copynumber: 7.9 Consensus size: 896
10448623 GTTGACTTAG
* * * * * * * *
10448633 GCATCTGGAGTTCATTCTCAATCTAAGATCAGACTGTACCAAGGGTTGCGGTAGCACGTGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
10448698 CTCGGGCATGTGCTGGTGATGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
* *
10448763 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
10448827 CGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAG
195 C-------GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
10448892 AACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGT
253 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
10448957 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAAT
318 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * * * *
10449022 TTTTTTGCGCATGCCAAAAAAAATACAAGGATCATGCCTACCATGTTTAGGGCCAAAACTCTTTT
383 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCT
* * * * *
10449087 CGAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAGAAATAAAAAACGAG
448 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAG
* *
10449152 TCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
10449217 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
578 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
10449282 GCTTGCGCATCTCGTCTCTTTGGCCGACATAGTGCCCGCTCGCCCGTCCGCTCGTTTCGTCGGTT
643 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CGCCC-T-CGCTCGTTTCGTCGGTT
* * * *** * * *
10449347 GGCTTACGCATACGCAGTTCATTCCCAGTCTAAGATTGGACCAAATCGAGGGTTCCTGCAGCAGG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGG
* * * * * *
10449412 ATCGATAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCACATCCCCCCCCTCTGGCTGGT
770 ATCGACAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGC
** * * * * * *
10449477 TGAGCGCCTTCATGCTTGTTCCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTAC-AG
835 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAA
* * * * * *
10449539 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGAATCAAGGGTTACGGCAGCACATGTTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
10449604 CTTGGGTAGGTGCTGGTACCGTATTTTTCTTCCCCGGGGCACCATCGTCAGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
* *
10449669 ACCTGACCGACGGCATTAGGGTTCCGAC-ATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
10449733 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
10449798 ACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAACTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10449863 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTCAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
10449928 TGCACGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTGCCTCT-GAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTCTCGAAAA
* * * * *
10449992 AATTTTAAAAAATCTCGAACCGTAAAAACTTTCAAAAATCAGGAAAAATAGAATATGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCT
* * * *
10450057 TGCCATGAAGCTTGACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
10450122 ATTGGCATGCAAAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGT
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * *
10450187 GCATCTCGTCACTCTAGCCGGTGTAGTGCCCGCTTGCCCATCTGCTCGTTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CGCCC-TC-GCTCGTTTCGTCGGTTGGCTTA
* *
10450252 GGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCT-GATCGAGGGTTGCGGCAGCAGGATCGA
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * *
10450316 CAGCACGTAGAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
775 CAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGC
* * * *
10450381 ACCCGTACGCTCGTTTCGCGGGTTAACTTA-GCTATACGGAGTTCATTCCCAGTCTAA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAA
** * * * *
10450438 GCATGCGGAGTTCATTCCCAGACTAAGATTGGACCGGACCGAGGGTTGCGCCAGCACATCCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * ** *
10450503 CTCGAGCATGTGCTAGTGCCATATTTTTCTTCACTGAGGCACCATCCCCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
** ** *
10450568 ACCTGACCGGTGGCATTGGGGTTCCGACGATTCGGGCGGTTCCGGAGAAGGGTGTGCGCACATGA
130 ACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGG-GGGGCCGG-G-GGGGTGTGCGCACATGA
* * * *
10450633 TGTGCGATGGGTGCATGGTACTTTGG-CCTTATGTT-GCCGGCCTATCTC-CATCTAAACTTCGA
191 TGTGCGATGGGTGC-TGGTAC-TTGGCCCTTATATTGGCC-CCCTATCCCTCATC-AAACCTCGA
* * *
10450695 GAACTCACA---CCTT-AAGAGCTTTTTGAGATGTTTACA-GTTTGCT--TAGTAGCGCGTTAAA
252 GAACTCACACCCCCTTAAAGAGC-ATTTGAGAT-TTTACAGGTTTGCTGCCAGTAGC-CATTAAA
* * * * * *
10450753 CGTATTTTGAAATGGGGGACACTTTTTTC-AATGGTAAC-AAATGGTTGT-CACTTTGATTTTTT
314 -GT-GTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTT
* *
10450815 AGCTGGAATTTTTTTTTTGCATG-CAACATAAAATACAAGG-TTACGTCTA-CAA-TTT-----C
375 AGCT-GAA-TTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * * *
10450871 ----CT-TTTTCGAAAAAATTATTAAAAAAT---GAAACGGCAAAATGTCT-GAAAAT-TGTGAA
437 AAAACTCCTCTCGAAAAAATT-TTAAAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCAG-GAA
* *
10450926 TAAATAGAAAACGGGTCGTCTTG-CATGCGAAACTTCGACTGTGAAGGCTTAAGGGACCGATGGT
499 -AAATAGAAAACGAGTCGTCTTGCCAT--GAAACTTC-AC-GTGAAGGCTTAAGGGACC-ATTGT
* **
10450990 ATGAA-TTACAAGCCATAAAAATGGCATTGCCACATAGAAATATGAAGATGTGCCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
10451054 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCC-CGCT
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCT
* * * * * ** *
10451118 CGCTCG-TT--TC-----GC---GGCATACGAAGTTTATTACCAATCTAAGGTCAAACTGGACTG
688 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
* * * *
10451172 AGGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
753 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATC
* *
10451237 CCACCCCTCTAG-TCGACT-AGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
818 CCACCCCTCTGGCT-GGCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
10451300 TTCATTCCCAATCTAA
881 TTCATTCCCAGTCTAA
* * * *
10451316 GTATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
10451381 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGTGCACCGTCCCCGGAGCATCGTTGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * * *
10451446 ACCTGACCGACGGCATTGGAGTTCCAACGATCGGGGGGGTCGAGGGGGTTGTGCGCACAAGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* * * *
10451511 ACGATGGATGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
10451576 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
10451641 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACATT-GAGTTTTTAGCTGAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
* * * *
10451705 TGCGCATGCCAACAAAAATATACGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTC-GAA
* * * *
10451769 AAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGT
* * * *
10451834 GTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTATATCAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
10451899 GCATTGGCATGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
10451964 -CGCAACCCGTCTCTCTGGCCGACGTAGGGCCCAGCCG-CC-CACTCGTTTCGTCAGTTGGCTTA
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-GCCGCCCTCGCTCGTTTCGTCGGTTGGCTTA
* ** ** * * * *
10452026 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCAAACCGAGGGTCCCGACAGTAAGATCGG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCAGGATCGA
** * * * *
10452090 CAGCACGCAGAGGGGGACCCAACTGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGT
775 CAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGC
* * *
10452155 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCACATGGAGTTCATTCCCAGTCTAA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10452212 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCACCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
10452277 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
10452342 ACCTGACCGATGGCTTTGGGGTTCCGAAGATTGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* *
10452407 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
10452472 CACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
10452537 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
10452602 ATGCATGCCAATGAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCT-TCCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCT-CGAAA
* * *
10452666 AAA-TTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTC
10452730 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
10452795 CTTTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATTCATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
10452860 CGCATCCCGTCTCTCTGGCCGA-GAAAATGCCCGCC-CGCTCGCTCGTTTCATCGGTTGGCTTAG
648 CGCATCCCGTCTCTCTGGCCGACG-TAGTGCCCGCCGCCCTCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
10452923 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATTGGCA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
10452988 ACACGCAGAGGGGGGCCCAGCCGATCCCCGACTTGCGCATCCC-GCCCTTTGG-TCGGCTGAGCG
777 GCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCT-GGCTGAGCG
* * *
10453051 CCCGCACGCTCGTTCCGTGGGTTGACTTAGTCATACAGAGTTCATTCCCAGTCTAA
841 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
10453107 GCAAATGGAGTTCATTCGCAGTCTAAGATCGGACCGGACCGAGGTTTACGGCAGCACATGTTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** *
10453172 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATTGTCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
* *
10453237 ACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGAGTC-GGGGGGTGTGCGCA-AGTGATG
130 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACA-TGATG
10453299 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
10453364 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
10453429 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
10453494 TGTGCATGCCAACAAAAATACGAGGATCACGTCCACAAAGTTTGGGGCCAAAACTCCT-TCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAA
* *
10453558 AAGATTTTAAAAAATCCCCAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCA
453 AA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAG-GAAAAATAGAAAACGAGTCG
* *
10453622 TCTTGCCATGAAACTTCACGTGCAA-GCTTAAGGGACCATTGTATGAATTTACGAGCTATAAAAA
516 TCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
10453686 TGGCATTGGCACACAGAAATATGAAGATGTACCTGAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
10453751 TTGTGCATCCCGTTTTTCTGGCCGACGTAGTGCCCGCCCACCAGCCCGCCCGTTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CC-G-CC-CTCGCTCGTTTCGTCGG
* * * * * *
10453816 TAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGCTGGACCGACGGTTCCAGCAGCA
703 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
* * * * * * * *
10453881 AGATCGACAGCATGCAAAGGGGGACTCGGTTGATCCTCGGCTTACGCATCCCACCCCTCTGGCCG
768 GGATCGACAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTG
* * *
10453946 GTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCCTACGGAGTTCATTCCCAG--T--
833 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10454006 -C-TA---AG---A-T--C-G-----GA-C---CAGACCGAGGGTTACGGTAGCACATACTGGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** * * *
10454050 TCTGGCTTGTGCTGGTGCTACATTTTTCTTCACCGAGGCACCATCGTCGGAGAATCATCAGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAA
* * **
10454115 CCTGACTGACGACATTGGGGTTCCG--GTATC-GGGGGG-CAAGGGGGTGTGCGCACATGATGTG
131 CCTGACCGACGGCATTGGGGTTCCGACG-ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
10454176 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCCAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10454241 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10454306 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
10454371 TGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAA-TCCTTTCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAAAA
* *
10454435 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTT
*
10454500 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
10454565 TTGGCACACAGAAATATGAAGATGTG-------CCACCTACCACCCTATCGATCCATGGCTTACG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
10454623 CATCCCATCTCTCTGGCTGACGTAGTGCCCGCC-CGCC-CGCTCGTTTAATCGGTTGGCTTAGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGC-CCTCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
10454686 ATATGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGTTTGCGGCAGTAGGATCGACAAC
714 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * * **
10454751 ACGTAGAGGGGGA-CCTGATCGATCCTCGGCTTACGCATCCCGCCCCTCTGG-TCGATTGAGCGC
779 ACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCT-GGCTGAGCGC
* *
10454814 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCT--
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
10454867 -C------AG---A-T--C-G-----GA-C---CGGACCGAGGGTTGTGGCAGCACATGCTAAGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
10454909 TC-GGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGTAGCATCGA-CGGAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-ATCGGAGA
** * * * * *
10454972 ACCTGACCGACGGTTTTGGCGTTCCAGA-AATTGGGGGGGTCGGGGGGGTGTACGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
** *
10455036 GCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
10455101 CACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGTTTCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
10455166 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
10455231 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAC
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAAA
* * *
10455296 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAG-GAAAAATAGAAAACGAGTCGTC
* *
10455360 TTGCCATGAAACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
10455425 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *** * * *
10455490 CGCATCCCGTCGGCGTACT-GCC--CG-CCCGCCTGCC-CGCTCGCTCGTTTCGTCGGTTTGCTT
648 CGCATCCCGTC-TC-T-CTGGCCGACGTAGTGCCCGCCGCCCTCGCTCGTTTCGTCGGTTGGCTT
*
10455550 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
10455608 CATGCTGGGC
Statistics
Matches: 5254, Mismatches: 664, Indels: 340
0.84 0.11 0.05
Matches are distributed among these distances:
858 71 0.01
859 211 0.04
860 8 0.00
861 251 0.05
862 158 0.03
863 2 0.00
867 57 0.01
868 77 0.01
869 39 0.01
870 1 0.00
871 3 0.00
872 2 0.00
873 5 0.00
874 187 0.04
875 335 0.06
876 49 0.01
877 153 0.03
878 305 0.06
879 8 0.00
881 3 0.00
882 2 0.00
883 1 0.00
885 40 0.01
886 103 0.02
887 16 0.00
888 23 0.00
889 48 0.01
890 46 0.01
891 18 0.00
892 20 0.00
893 381 0.07
894 209 0.04
895 396 0.08
896 697 0.13
897 4 0.00
898 7 0.00
899 746 0.14
900 11 0.00
901 23 0.00
902 155 0.03
903 99 0.02
904 74 0.01
905 50 0.01
906 159 0.03
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCTCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAGGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCTCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
GCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:10451328 original size:26 final size:26
Alignment explanation
Indices: 10451292--10451342 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
10451282 TGACTTAGGC
10451292 ATACGGAGTTCATTCCCAATCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
10451318 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
10451343 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:10456452 original size:26 final size:26
Alignment explanation
Indices: 10456415--10456467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10456405 GTTGACCTAG
*
10456415 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
10456441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10456467 G
1 G
10456468 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10457357 original size:26 final size:26
Alignment explanation
Indices: 10457318--10457370 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10457308 GTTGACTTAG
10457318 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
10457344 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACGGAA-TTCATTCCCAGTCTAA
10457370 G
1 G
10457371 ATTGAACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:10457479 original size:903 final size:896
Alignment explanation
Indices: 10455552--10459929 Score: 4664
Period size: 903 Copynumber: 4.8 Consensus size: 896
10455542 GTTTGCTTAG
*
10455552 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
10455617 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCAT---C---G---CC-GG-GAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCCTGGAGAA
* * * * * * *
10455671 CCTGACCGGCGGCATTGTGGTTTCGGTGATCGGGGGGGCCCGGGCGGGTGTACGCACATGATGAG
131 CCTGACCGACGGCATTGGGGTTTCGATGATC-AGGGGG-CCGGG-GGGTGTGCACACATGATGTG
* * * *
10455736 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCTCCTATCCCTCATCAAACCTCAAGAACTGAA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAA
* * * * *
10455801 ACCCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGCTGCCAATACCCATTAAAGTGTCAGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
10455866 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
10455931 TGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCTAAAAATCCATCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** * *
10455996 ATTTAAAAAAATCTCGAACCGTAAAAAATTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
10456061 GCCATAAAACTTCATGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
10456126 TTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCTATCACCCTATCGATCCACAGCTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
10456191 CATCCCGTCTCTCTGGCCGACGTAGCGCCCACCC-GCCTGCCTGCTTGTTTCGTCGGTTGCCTTA
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
10456255 GGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGTAGTAGGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGTAGCAGGATCGGC
* * * *
10456320 AGCATGCAGAGAGGGACCCGATCGATCCCCGACTTACGCATCCCACCCCTCTGGCCAGCTGAGCG
778 AGCATGCAGAGGGGGACCCGATCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
10456385 CCCGCACGCTCGTTTCGTGAGTTGACCTAGGCATACGAAGTTCATTCCTAGTCTAA
842 CCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAA-TTCATTCCTAGTCTAA
* * * **
10456441 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
10456506 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCTGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATC-CTGGAGA
* * * *
10456571 ACCTGACCAACGGTATTGGTGTTCCGATGATC-GGGGTGACCGGGTGGGTGTGCACACATGATGT
130 ACCTGACCGACGGCATTGGGGTTTCGATGATCAGGGG-G-CCGGG-GGGTGTGCACACATGATGT
*
10456635 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
10456700 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAA
257 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
10456765 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
10456830 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
10456895 GA-TTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTCATCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
10456959 TGCCATGAAATTTCACAAT-AAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCGTAAAAATGG
517 TGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
10457023 CATTGGCACAAAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
10457088 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCTACCGTCCCGATCGTTTCATCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATC--CCG-CCCGCTCGTTTCGTCGGTTG
* * * *
10457153 GCTTACGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGATCGAGGGTTGTGGCAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGTAGCAGGA
* * * * * * *
10457218 TTGGCAGCACGTAGAGGGGGACCCGGTCAAACCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTT
773 TCGGCAGCATGCAGAGGGGGACCCGATCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
10457283 GAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATAC-GAATTCATTCCTAGTCTAA
* * * * *
10457344 GCATAC-GAAGTTCATTCCCAGTCTAAGATTGAACTAGACCGAGTGTTGTGGTAGCACATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
10457408 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCCT-GGAG
* * *
10457473 AACCTGACCGACGGTATTGGGGTTTCGATGATACGGGGGGCCGGGGGGGTGTGCACACTTGATGT
129 AACCTGACCGACGGCATTGGGGTTTCGATGAT-CAGGGGGCC-GGGGGGTGTGCACACATGATGT
* *
10457538 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATTA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** * * *
10457603 AACCCCCTTGGAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGGAA
257 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
10457668 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * *
10457733 ATGCACACTAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGACCAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
10457798 AATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
10457863 TGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
10457928 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
10457993 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGTCCA-CCCGCCCGCTTGTTTCGTCGGTTG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCATCCCGCCCGCTCGTTTCGTCGGTTG
** ** *
10458057 GCTTAGGCATACGGAGTTCATTCATAGTCTAAGAACGGATCGGATCGAGGGTTGCGGTAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGTAGCAGGA
* * * * * * * *
10458122 TCGACAGCATGCAAAGGGGGACCCGATCGATCCCTGGCTTGTGCATCTCGCCCCACTAGCTGGCT
773 TCGGCAGCATGCAGAGGGGGACCCGATCGATCCC-CGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
10458187 GAGCGCCCGCACGCTCATTTCATGGGTTGACGTAGGCATACAGAGTTCATTCCTAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATAC-GAATTCATTCCTAGTCTAA
10458248 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGTATCGAATCGGAC
1 GCATACAGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G---A--A-C---T-GGAC
* * * * *** *
10458313 CGAGGGTTGCGGTAGCAAATGCTGGGCTCGGGCATTTGCTGGTGTCGCATTTTTCTTTGGCGGGT
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* ** * *
10458378 CACCATCACCAGAGCATCACTGGAGAACCTGAGCC-ACTACATTGGGGTTTCGACGGTCAGAGGG
105 CACCATCACCGGAGCATC-CTGGAGAACCTGA-CCGACGGCATTGGGGTTTCGATGATCAG-GGG
* * * *
10458442 GCCAGGGGGTGTGCGCACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTA
167 GCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
10458507 TCCGTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
232 TCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
10458572 CCAGTAGCCATTAAAGTGTATGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
297 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
10458637 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCAAGTCTACCAAGT
362 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* **
10458701 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATC
427 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
10458766 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** * * *
10458831 TGAATTTATGAGCCATAAAAATGACATTGGCACACAGAAATATGAAGATTTGCCTAAACCCACAT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
10458896 ACCACCATATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCAGCATAGT----GCCCA-CCC
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCCC
* * *
10458956 GCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
687 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-TGGA--T
* * * ** * ** ** * *
10459021 CATTCCTAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAACATCGAATTGGACTGAGGGTTACG
748 CA----GA-TCGAGGGTTGCGGTAG--CA---GGA-TC-GGCA--GCA-T-G-CAGAGGG----G
* ** ** * * *** * * * * *
10459085 GTAGCAC-ATGCTGGGCTCGGGCATGTGCTG-GTGCCGCATTTTTCTTTGTCGG-GGCACCATCA
792 G-A-CCCGAT-C-GATC-CCCGC-T-TGC-GCATCCCGC--CCCTC-TGGCCGGCTG-AGC-GC-
* ** * * * ** *
10459147 CCGGA-GAACCTGACCGGTGGCATTGGGGTTTCGACGAGCTGCGGGGAACACT-CG-TTTTGTTG
843 CCGCACG---CT---C-GTTTC-GT-GGG-TT-GAC---CT---AGG--CA-TACGAATTCATTC
* * * *
10459209 GTTGACTTAG
888 CTAGTC-TAA
* *
10459219 GCATACGGAGTTCATTCCCAGTTTACGCATACGGAGTTCATTCCCAGTCTAGTATCAGACAGGAC
1 GCATACAGAGTTCATTCCCAG--T---C-TA---AG---------A-TC--G----A-ACTGGAC
* * * * * * * *** *
10459284 TGAGGGTTGCAGTAGCAAATGCTGGGCTGGGGCATTTGCTGGTGTCGCATTTTTCTTTGTCGGGT
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * ** ** * *
10459349 CACCATCACCGAAGCATCATCGGAGAACCTGACCGGCGACATCAGGG-TTCTGGCGGTCGGGGGG
105 CACCATCACCGGAGCATCCT-GGAGAACCTGACCGACGGCATTGGGGTTTC-GATGATC-AGGGG
* * *
10459413 GCCGAGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCC
167 GCC--GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
10459478 TATCCCTCATGAAAGCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
230 TATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
10459543 TGCCCGTAGCCATTAAAGTGTTTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
295 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10459608 ACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
360 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * ** * ** *
10459673 GATTAGGGTTAAAACTCCTTCC-AGAAAAATTTAAAAAAATCTCGAATAGCAAAAAGTTTCAAAA
425 GTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
10459737 ATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATT
489 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * **
10459802 GTACGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
554 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
* * **
10459867 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCAGGCCGATGTAGTGCCCGCCC
619 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
10459930 GCCCGTTCGC
Statistics
Matches: 2971, Mismatches: 376, Indels: 195
0.84 0.11 0.06
Matches are distributed among these distances:
889 102 0.03
892 1 0.00
895 1 0.00
898 1 0.00
899 207 0.07
900 264 0.09
901 26 0.01
902 4 0.00
903 575 0.19
904 411 0.14
905 8 0.00
906 2 0.00
907 1 0.00
908 3 0.00
909 1 0.00
910 2 0.00
913 2 0.00
916 1 0.00
917 1 0.00
920 56 0.02
921 1 0.00
922 5 0.00
923 1 0.00
924 3 0.00
925 1 0.00
926 1 0.00
928 257 0.09
929 217 0.07
930 110 0.04
931 3 0.00
933 1 0.00
934 2 0.00
935 3 0.00
937 2 0.00
938 1 0.00
939 1 0.00
940 5 0.00
944 2 0.00
945 3 0.00
946 3 0.00
947 5 0.00
948 2 0.00
949 6 0.00
950 1 0.00
951 2 0.00
952 6 0.00
953 2 0.00
954 4 0.00
956 2 0.00
959 1 0.00
960 2 0.00
961 1 0.00
962 3 0.00
963 2 0.00
964 3 0.00
967 1 0.00
970 15 0.01
971 148 0.05
972 4 0.00
973 215 0.07
974 242 0.08
975 2 0.00
976 3 0.00
977 4 0.00
978 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCCTGGAGAA
CCTGACCGACGGCATTGGGGTTTCGATGATCAGGGGGCCGGGGGGTGTGCACACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGC
ATGCAGAGGGGGACCCGATCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACCTAGGCATACGAATTCATTCCTAGTCTAA
Found at i:10458252 original size:26 final size:26
Alignment explanation
Indices: 10458222--10458298 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
10458212 GTTGACGTAG
*
10458222 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10458248 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
10458274 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
10458299 GTATCGAATC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10459019 original size:26 final size:26
Alignment explanation
Indices: 10458983--10459060 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
10458973 GTTGGCTTAG
10458983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10459009 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10459035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10459061 CATCGAATTG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10460806 original size:26 final size:26
Alignment explanation
Indices: 10460776--10460828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10460766 GTTGACTTAG
10460776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
10460802 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10460828 G
1 G
10460829 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10462983 original size:863 final size:856
Alignment explanation
Indices: 10460802--10465805 Score: 5732
Period size: 891 Copynumber: 5.7 Consensus size: 856
10460792 CCCAGTCTAA
* * * * *
10460802 GCATATGGGGTTCATTCCCAGTCTAAGATCAGA-CTGAACCGAGGGTTCCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGCACATGCTGG
* * * *** *
10460866 GCTCGGGCAAGTGCTGGTGCCACATTTTTCTTC-ACTGGGGCACCATCATTGGAGCACCGTCGGA
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATC-GCAGAGCA-C--CAGA
* * * * * *
10460930 GAACCCGCCCGACGGCATTGGGGTTCCGATGATCGGTGGGGTCGGGGGGTGGTGTGCGTACATGA
125 GAACCTGACCGGCGGCATT-GGGTTCCGACGATCGG-GGGGAC--GGGG-GGTGTGCGCACATGA
* * *
10460995 TGTACGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAAC
185 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
**
10461060 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTAGCCATTAAAGTGTCT-
250 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTG
* * * * *
10461124 AGAATGGGGACAATTTTTTCAAATGGTCTCAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATGT
315 A-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
* * *
10461189 TTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGATTAGGGCCAAAACTCCTTACA
379 TTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAACTCCTTCCA
* * * *
10461254 AAAAAAATTAAAAAAATCTCGATCCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTC
442 AAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
10461319 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
507 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
10461384 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAGACCCACCTACCA-CCTATTGATCCATGGC
572 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
10461448 TTGCGCATCCCGTCTCTCAGGCT-GGCGTAGT----G--C-CCGCCCGCCCGCTCGTTTCGTTGG
637 TTGCGCATCCCGTCTCTCAGGCTCGACGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGG
* *
10461505 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TCAGACCAGACTGAGGGCTACGGCAGC
702 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCGAGGG-T--------
* ** *
10461569 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCCACTTGCACATCCCGCCCCT-TTGCT
757 A-G--CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACAT-CCGCCCCTCTGGC-
* * * * *
10461633 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTTACATAG
817 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
10461673 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** * *
10461738 CTCGAGCACGTGCGGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGAAGCATCGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAG-AGCA---CCAGAGA
* *
10461803 ACCTGACTGGCGGCATTGAGGTTCCGACGATCGGGGGGAACAGGGCGGTGTGCGCACATGATGTG
127 ACCTGACCGGCGGCATTG-GGTTCCGACGATCGGGGGG-AC-GGGGGGTGTGCGCACATGATGTG
* *
10461868 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATGAAACCTCGACAACTCAC
189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
10461932 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTATAGCCATTAAAGTGTCTGAAAT
254 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
*
10461997 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTG
319 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* *
10462062 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTAGGGCCAAAATTCCTTCCAAAAAA
384 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAACTCCTTCCAAAAAA
* *
10462127 ATTTAAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
447 ATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
10462192 GCCATGAAACTTCACGTGAAGGCTTAAAGGAGCATTGTATGAATTTATAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
10462257 TTTGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCG
577 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
10462322 CATCCCGTCTCTCAGGCTAG-CGTAGTGCCCGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGC
642 CATCCCGTCTCTCAGGCTCGACGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
10462386 CTTAGGCATACGGAGTTCATTCCTAGTTTAAGATTGAACCAGACCGAGGGTAGCGGCAGCACCCA
706 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTAGCGGCAGCACGCA
** *
10462451 GAGGGGGACCCGATCGATCCCCGGCTTGCGGATCCGACCCCTCTGGCCGGCTGAGCGCCTACACG
771 GAGGGGGACCCGATCGATCCCCGGCTTGCACATCCG-CCCCTCTGGCCGGCTGAGCGCCCACACG
* *
10462516 CTTGTTTCATGGGTTGACTTAG
835 CTCGTTTCGTGGGTTGACTTAG
10462538 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
10462603 CTCGGGCATGTGCTGGTACCGCATTTTTCTTCGTCGGGCCACCATCGTCAGAGCATCACTAGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-CAGAGCA-C-C-AGAGA
* * * * *
10462668 ACCTGACCGGTGGCATTAGGGTTCTGACGATCGGGGGG-CAGGGGGTGTGCACACAGGATGTGCG
127 ACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGACGGGGGGTGTGCGCACATGATGTGCG
10462732 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
10462797 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGG
10462862 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
* * * * * * *
10462927 TATACCAGAAAAAATAAAAGGATCACGTCTGCCAAGTTTGGCCCCAAAAATCCTTCCGAAAAAAT
386 CATGCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCAAAAAAAT
* * ** *
10462992 TTAAAAAAATC-CTAAACCTCAAAAAGTTTTTAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
449 TTAAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
10463056 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTGCCAGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
10463121 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCTTATCGATCCACGGCTTGCGC
578 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
10463186 ATCCCGTCTCTCTA-G-TCGCCGTAGTGCCCG--C-CCGCCCGCCTGCTCGCTTT-GTCGGTTGG
643 ATCCCGTCTCTC-AGGCTCGACGTAGTGCCCGCCCGCCGCCCGCCCGCTCG-TTTCGTCGGTTGG
* * * * *
10463245 TTTAGCCATATGAAGTTCATTCCCAGTCTAAAATTGGATTGGACCGAGGGCTGCGACAGCAGG-A
706 CTTAGGCATACGAAGTTCATTCCCAGTCT--AA---GATTGAACC-A-GAC--CG--AG--GGTA
* * * *
10463309 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCACATCTCGCCCCTCTGGCCGGTT
758 GCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATC-CGCCCCTCTGGCCGGCT
* * *
10463374 GAGAGCCCTCACGCTCGTTTCGTAGGTTGACTTAG
822 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
10463409 GCATACGGAGTTCATTCCCAGTCTAAGATC-GTATCAGACCGAGGGTTGCGGTAGCACATCCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCACATGCTGG
* * * *
10463473 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCAGAACCATCGCCGGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAG-AGCA---CCAGAG
* * **
10463538 AACCTGACCGGCGACAATTGGGATCC-AGCGATCGGAGGGTCGGGGGGGGTGTGTGCGCACATGA
126 AACCTGACCGGCGGC-ATTGGGTTCCGA-CGATCGG-GGG--GACGGGGG-GTGTGCGCACATGA
*
10463602 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAAC
185 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
10463666 TCACA-CCTCTCGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTT
250 TCACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCT
*
10463730 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTT
314 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
* * * * **
10463795 TTTTATGCATGTCAAAAAAAATACAAGTATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
379 TTTTGTGCATG-CCAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCA
* ** * *
10463860 AAAAAATTTTAAAAAATCTCGAACCGTTAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
442 AAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
10463925 GTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
507 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * **
10463990 TGGCATTGGCTTGCAGAAATATGTAGATGTGCTTAAACCCACCTACCACCCTATCGATCCATTGC
572 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
10464055 TTGCGCATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCGTCCGCCTGCCCGCTCATTTCGTCG
637 TTGCGCATCCCGTCTCTCAGGCTCGACGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCG
* * * *
10464119 GTTGGCTTAGCCATAC-AGAGTTCATTCCTAGTATAAGATCGAACCAGACCGAGGGTTGCAGTAG
701 GTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATTGAACCAGACCGA-----G--G--G
* * * *
10464183 TAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGC
756 TA-G--CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCC-GCCCCTCTGGC
* ** * *
10464248 CGGGTGAGCATCCACACGCTCGTTTCGTGGGTTAACTTTG
817 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
10464288 GCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGACTAAGATCAAATTGGAC
1 GCATACGGAGTTCATTCCCAGTCT------A---AG---A-T--CAGAC------C--A---GAC
* ** *
10464353 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGT
40 CGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * * *
10464418 CACCAT-----TG--CCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGG
105 CACCATCGCAGAGCACCAGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATC-GGGGGGACGG
* ** *
10464476 GGGGTGGGCGCACATGATGTGCTTTGGGTGCTGGTACTTGGCGCTTATATTGGCCCCCTATCCCT
168 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
10464541 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAAGTTTGCCACCAAT
233 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAAT
* * * *
10464606 AGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAACGGACACAAAATCTTGTACACTTCGA
298 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
* * * * *
10464671 GTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAATACATGGATCACATCTACCAGGTTTGAGG
363 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTG-GG
* * *
10464736 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
427 CCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * ** * *
10464801 AATAGAAAATGAGTCGTCCTGTGATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAGTT
492 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
10464866 TACAAGCCATAAAAATGGCATTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
557 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * ** * *
10464931 CCATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-TCGACGTAGTGATCACCTGCCCGCCCGC
622 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGCTCGACGTAGTGCCCGCCCG-CCGCCCGC
* * * * *
10464995 CTGCTCGTTTCGTCGGTTGGCTTAGGCATGCAAAGTTCATTCCCAGTCTAAGATTGAACCAAACA
686 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACC
* **
10465060 GAGGGTTA-CGGCAGTAGGATCGACAGAACGTAGAGGGGGACCCGATCGATCCCCGACTTGTTCA
751 GAGGG-TAGCGGC---A-G--C-AC-G--C--AGAGGGGGACCCGATCGATCCCCGGCTTGCACA
* * * *
10465124 TCCCGCCCCTCTGGCTGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTGG
803 T-CCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
**
10465179 GCATACAAAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTTCTGGTCTAAATCAGATCGAACC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A--------C-----C--A--G-ACC
* * *
10465244 GAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGT
41 GAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * * * * *
10465309 ACCATCGCCG-G----AGAG--CCTGATCGGTGGCACTGAAGTTTCGACGATCGGGGGGCCGGGG
106 ACCATCGCAGAGCACCAGAGAACCTGACCGGCGGCATTG-GGTTCCGACGATCGGGGGGAC-GGG
* *
10465367 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCTCTATCTCC-
169 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCT
* * * *
10465431 CATCAAACCACGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACA-GTTTGCTTCCAGT
233 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAAT
* * *
10465495 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCATAAAATCTGGTACACTTCAA
298 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
* *
10465560 GTTTTTACCTAAATTTTTTTGTGCATGCCAAAAGAAATACAAGGATCACGTCTACCAAGTTTGGG
363 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA-AAATACAAGGATCACGTCTACCAAGTTT-GG
* * * * **
10465625 GCCAAAACTCCTTCCAAAACAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
426 GCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAA
*
10465690 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAAT
491 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
10465755 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
556 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
10465806 TCATAACGTC
Statistics
Matches: 3590, Mismatches: 389, Indels: 289
0.84 0.09 0.07
Matches are distributed among these distances:
859 42 0.01
860 5 0.00
861 3 0.00
862 58 0.02
863 408 0.11
864 14 0.00
865 223 0.06
866 8 0.00
867 1 0.00
868 378 0.11
869 91 0.03
870 19 0.01
871 349 0.10
872 16 0.00
873 8 0.00
874 12 0.00
875 408 0.11
876 54 0.02
877 68 0.02
878 8 0.00
879 155 0.04
880 4 0.00
882 4 0.00
883 4 0.00
884 1 0.00
885 3 0.00
886 3 0.00
887 1 0.00
888 2 0.00
889 110 0.03
890 394 0.11
891 457 0.13
892 164 0.05
893 7 0.00
894 36 0.01
895 4 0.00
900 1 0.00
902 1 0.00
905 66 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (856 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCAGAGCACCAGAGAACCT
GACCGGCGGCATTGGGTTCCGACGATCGGGGGGACGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTAAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCAGGCTCGACGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTAGCGGCAGCACGCAGAGGGGGACC
CGATCGATCCCCGGCTTGCACATCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTG
GGTTGACTTAG
Found at i:10466465 original size:119 final size:118
Alignment explanation
Indices: 10466277--10466866 Score: 950
Period size: 119 Copynumber: 5.0 Consensus size: 118
10466267 TTTTGTGTAG
* ** *
10466277 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTGAAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
* *
10466341 TGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGATTTCCAA
66 TGATATTTTCAACTTTTCCTTAAAAATA-TTTTTTTTGAAAATTTGATTTCCAA
10466395 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
* *
10466460 TGATATTTTCAAATTTTCCTTAAAAATATTTTTTTTGAAAATTTAATTTCCAA
66 TGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
*
10466513 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTT-GAAAATTTATTTCTAAGGAAAA
*
10466578 TTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
65 TTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
*** *
10466632 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATAATTTTTTTGAAAATTTGATTTCCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-CCCTTTTTGAAAATTT-ATTTCTAAGGAA
* * *
10466696 AATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
63 AATTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
10466752 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
*
10466817 TGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAGTTTTGATTT
66 TGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAA-ATTTGATTT
10466867 TCATTTAAAG
Statistics
Matches: 440, Mismatches: 25, Indels: 13
0.92 0.05 0.03
Matches are distributed among these distances:
118 150 0.34
119 187 0.43
120 102 0.23
121 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
TGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
Found at i:10466530 original size:60 final size:59
Alignment explanation
Indices: 10466277--10466856 Score: 828
Period size: 60 Copynumber: 9.8 Consensus size: 59
10466267 TTTTGTGTAG
* **
10466277 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
* *
10466334 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAAATTT-ATTTCCAA
*** *
10466395 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
* * *
10466453 GGAAAATTGATATTTTCAAATTTTCCTTAAAAATATTTTTTTTGAAAATTTAATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*** * *
10466513 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
*
10466572 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*
10466632 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATAATTTTTTTGAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*
10466692 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*** *
10466752 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
* *
10466810 GGAAAATTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAA
10466857 GTTTTGATTT
Statistics
Matches: 467, Mismatches: 46, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
57 33 0.07
58 77 0.16
59 99 0.21
60 218 0.47
61 40 0.09
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
Found at i:10466773 original size:32 final size:32
Alignment explanation
Indices: 10466680--10466774 Score: 78
Period size: 32 Copynumber: 3.1 Consensus size: 32
10466670 TTTTTGAAAA
10466680 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
1 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
* ** *
10466712 -TT--TTCCTCAA--AAATATT--TTTTTTGAAAC
1 TTTGATTTC-CAAGGAAA-ATTGATACTTT-CAAC
10466740 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
1 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
10466772 TTT
1 TTT
10466775 TCCTCAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 4 0.09
28 6 0.13
29 8 0.18
30 6 0.13
31 8 0.18
32 9 0.20
33 4 0.09
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (32 bp):
TTTGATTTCCAAGGAAAATTGATACTTTCAAC
Found at i:10466897 original size:17 final size:16
Alignment explanation
Indices: 10466872--10466949 Score: 63
Period size: 15 Copynumber: 4.8 Consensus size: 16
10466862 GATTTTCATT
*
10466872 TAAAGAAAATAGAATAA
1 TAAAAAAAATA-AATAA
10466889 TAAAAAAAATAAATAA
1 TAAAAAAAATAAATAA
*
10466905 -AAATAAAA-AAATAAA
1 TAAAAAAAATAAAT-AA
* *
10466920 GAAAAGTAAAACAAA-AA
1 TAAAA--AAAATAAATAA
10466937 TAAAAAAAATAAA
1 TAAAAAAAATAAA
10466950 GATGAAAAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
14 4 0.08
15 16 0.31
16 8 0.16
17 16 0.31
18 4 0.08
19 3 0.06
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.14
Consensus pattern (16 bp):
TAAAAAAAATAAATAA
Found at i:10466901 original size:9 final size:10
Alignment explanation
Indices: 10466887--10466949 Score: 62
Period size: 9 Copynumber: 6.6 Consensus size: 10
10466877 AAAATAGAAT
10466887 AATAAA-AAA
1 AATAAACAAA
*
10466896 AATAAATAAA
1 AATAAACAAA
10466906 AAT-AA-AAA
1 AATAAACAAA
*
10466914 AATAAAGAAA
1 AATAAACAAA
*
10466924 AGTAAAACAAA
1 AAT-AAACAAA
10466935 AATAAA-AAA
1 AATAAACAAA
10466944 AATAAA
1 AATAAA
10466950 GATGAAAAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
8 6 0.13
9 19 0.40
10 14 0.30
11 8 0.17
ACGTcount: A:0.83, C:0.02, G:0.03, T:0.13
Consensus pattern (10 bp):
AATAAACAAA
Found at i:10466914 original size:18 final size:18
Alignment explanation
Indices: 10466891--10466942 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
10466881 TAGAATAATA
10466891 AAAAAAATAAATAAAAAT
1 AAAAAAATAAATAAAAAT
* *
10466909 AAAAAAATAAAGAAAAGT
1 AAAAAAATAAATAAAAAT
*
10466927 AAAACAA-AAATAAAAA
1 AAAAAAATAAATAAAAA
10466943 AAATAAAGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 7 0.24
18 22 0.76
ACGTcount: A:0.83, C:0.02, G:0.04, T:0.12
Consensus pattern (18 bp):
AAAAAAATAAATAAAAAT
Found at i:10466957 original size:15 final size:14
Alignment explanation
Indices: 10466877--10466949 Score: 60
Period size: 14 Copynumber: 5.1 Consensus size: 14
10466867 TCATTTAAAG
* *
10466877 AAAATAGAATAATA
1 AAAATAAAAAAATA
*
10466891 AAAA-AAATAAATA
1 AAAATAAAAAAATA
10466904 AAAATAAAAAAATA
1 AAAATAAAAAAATA
* *
10466918 AAGAA-AAGTAAAACA
1 AA-AATAA-AAAAATA
10466933 AAAATAAAAAAAATA
1 AAAAT-AAAAAAATA
10466948 AA
1 AA
10466950 GATGAAAAGA
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
13 10 0.22
14 18 0.39
15 16 0.35
16 2 0.04
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (14 bp):
AAAATAAAAAAATA
Found at i:10467955 original size:28 final size:26
Alignment explanation
Indices: 10467896--10467963 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 26
10467886 TAATTAGAAC
*
10467896 AGATAAATAAAAAAAAGATATATTAT
1 AGATAAATAAAAAAAAGATATATAAT
10467922 AGGATAAATAAAATAACAA-ATATATAATT
1 A-GATAAATAAAA-AA-AAGATATATAA-T
10467951 AGATAAATAAAAA
1 AGATAAATAAAAA
10467964 TACAAAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
26 1 0.03
27 12 0.32
28 20 0.54
29 4 0.11
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.25
Consensus pattern (26 bp):
AGATAAATAAAAAAAAGATATATAAT
Found at i:10467968 original size:28 final size:27
Alignment explanation
Indices: 10467896--10468008 Score: 82
Period size: 28 Copynumber: 4.3 Consensus size: 27
10467886 TAATTAGAAC
*
10467896 AGATAAATAAAAA-A-AAGATATATTAT
1 AGATAAATAAAAATACAA-ATATATAAT
10467922 AGGATAAAT-AAAATAACAAATATATAATT
1 A-GATAAATAAAAAT-ACAAATATATAA-T
10467951 AGATAAATAAAAATACAAA-A-ATAA-
1 AGATAAATAAAAATACAAATATATAAT
*
10467975 ATA-AAATATAAAATA-ATAATA-ATAAT
1 AGATAAATA-AAAATACA-AATATATAAT
*
10468001 AAATAAAT
1 AGATAAAT
10468009 TATAATATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 21
0.75 0.03 0.22
Matches are distributed among these distances:
23 6 0.08
24 10 0.14
25 5 0.07
26 11 0.15
27 12 0.16
28 20 0.27
29 9 0.12
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (27 bp):
AGATAAATAAAAATACAAATATATAAT
Found at i:10467985 original size:7 final size:8
Alignment explanation
Indices: 10467968--10468025 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 8
10467958 TAAAAATACA
10467968 AAAATAAAT
1 AAAAT-AAT
10467977 AAAAT-AT
1 AAAATAAT
10467984 AAAATAAT
1 AAAATAAT
10467992 AATAATAAT
1 AA-AATAAT
10468001 -AAATAA-
1 AAAATAAT
**
10468007 ATTATAAT
1 AAAATAAT
*
10468015 ATAATAAT
1 AAAATAAT
10468023 AAA
1 AAA
10468026 TATATAACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
7 16 0.39
8 14 0.34
9 11 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (8 bp):
AAAATAAT
Found at i:10468012 original size:28 final size:28
Alignment explanation
Indices: 10467970--10468024 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
10467960 AAAATACAAA
10467970 AATAAATAAAATATAAAATAATAATAAT
1 AATAAATAAAATATAAAATAATAATAAT
* *
10467998 AATAAATAAATTATAATATAATAATAA
1 AATAAATAAAATATAAAATAATAATAA
10468025 ATATATAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (28 bp):
AATAAATAAAATATAAAATAATAATAAT
Found at i:10468038 original size:22 final size:22
Alignment explanation
Indices: 10467928--10468051 Score: 84
Period size: 22 Copynumber: 5.8 Consensus size: 22
10467918 TTATAGGATA
* *
10467928 AATAAAATAACAAATATATAATT
1 AATATAATAATAAATATATAA-T
*
10467951 AGATA-AATAA-AAATACA-AA-
1 A-ATATAATAATAAATATATAAT
*
10467970 AATA-AAT-A-AAATATAAAAT
1 AATATAATAATAAATATATAAT
* *
10467989 AATAATAATAATAAATAAATTAT
1 AAT-ATAATAATAAATATATAAT
10468012 AATATAATAATAAATATATAACT
1 AATATAATAATAAATATATAA-T
* *
10468035 -ATATAAAAATACATATA
1 AATATAATAATAAATATA
10468052 CATATTAACA
Statistics
Matches: 84, Mismatches: 9, Indels: 17
0.76 0.08 0.15
Matches are distributed among these distances:
17 7 0.08
18 8 0.10
19 4 0.05
20 1 0.01
21 5 0.06
22 38 0.45
23 18 0.21
24 3 0.04
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (22 bp):
AATATAATAATAAATATATAAT
Found at i:10468241 original size:21 final size:20
Alignment explanation
Indices: 10468186--10468243 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
10468176 CTTACCCATT
10468186 TGGGCCAGGCCCAATTGATC
1 TGGGCCAGGCCCAATTGATC
*
10468206 TGGGCCAAGCCCAATTGATC
1 TGGGCCAGGCCCAATTGATC
*
10468226 TGGGCCTGGACCCAATTG
1 TGGGCCAGG-CCCAATTG
10468244 GGTGTCTACA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 26 0.76
21 8 0.24
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (20 bp):
TGGGCCAGGCCCAATTGATC
Found at i:10468357 original size:12 final size:11
Alignment explanation
Indices: 10468328--10468356 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
10468318 GACATTGTCA
10468328 TTTTTTTGTTT
1 TTTTTTTGTTT
10468339 TTTTTTTGTTT
1 TTTTTTTGTTT
10468350 TTTTTTT
1 TTTTTTT
10468357 TTTACCAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:10468549 original size:41 final size:41
Alignment explanation
Indices: 10468366--10468704 Score: 502
Period size: 41 Copynumber: 8.1 Consensus size: 41
10468356 TTTTACCAAA
* * *
10468366 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACCTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATT
*
10468409 GCTTCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
* * *
10468451 GCTCTTTTAAACAGAGGCACCACAACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
*
10468493 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
10468534 GCTCCTCTAAGCAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAGTAAATT
*
10468576 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
10468617 GCTCCTTTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
10468658 GCTCCTCTAAACAGAGGCA--ACGAAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG--ACTTTGAAAAGTAAATT
10468699 GCTCCT
1 GCTCCT
10468705 TGACAATCAT
Statistics
Matches: 273, Mismatches: 19, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
39 3 0.01
41 130 0.48
42 109 0.40
43 30 0.11
44 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:10468576 original size:83 final size:83
Alignment explanation
Indices: 10468366--10468704 Score: 504
Period size: 83 Copynumber: 4.1 Consensus size: 83
10468356 TTTTACCAAA
* * * *
10468366 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACCTAAATTGCTTCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
10468431 CGACTTTGAAAAAGTAAATT
65 CGACTTTGAAAAA-TAAATT
* * * *
10468451 GCTCTTTTAAACAGAGGCACCACAACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
10468516 GACTTTGAAAAATAAATT
66 GACTTTGAAAAATAAATT
*
10468534 GCTCCTCTAAGCAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
10468599 GACTTTGGAAAGTAAATT
66 GACTTTGAAAAATAAATT
*
10468617 GCTCCTTTAAACAGAGGCACCACGACTTTGA-AAAGTAAATTGCTCCTCTAAACAGAGGCA--AC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
10468679 GAAACTTTGAAAAGTAAATT
66 G--ACTTTGAAAAATAAATT
10468699 GCTCCT
1 GCTCCT
10468705 TGACAATCAT
Statistics
Matches: 234, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
80 3 0.01
82 51 0.22
83 111 0.47
84 40 0.17
85 29 0.12
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAATAAATT
Found at i:10469980 original size:16 final size:14
Alignment explanation
Indices: 10469948--10469991 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 14
10469938 AATTTGAATA
10469948 TCTTTTTTTCATTTTT
1 TCTTTTTTT--TTTTT
10469964 TCATTTCTTTTTTTTT
1 TC-TTT-TTTTTTTTT
10469980 TCTTTTTTTTTT
1 TCTTTTTTTTTT
10469992 CATCATCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.27
15 3 0.12
16 9 0.35
17 3 0.12
18 4 0.15
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (14 bp):
TCTTTTTTTTTTTT
Found at i:10469987 original size:11 final size:11
Alignment explanation
Indices: 10469950--10469992 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
10469940 TTTGAATATC
10469950 TTTTTTTCATTT
1 TTTTTTTC-TTT
*
10469962 TTTCATTTCTTT
1 TTT-TTTTCTTT
10469974 TTTTTTTCTTT
1 TTTTTTTCTTT
10469985 TTTTTTTC
1 TTTTTTTC
10469993 ATCATCCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 15 0.54
12 9 0.32
13 4 0.14
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:10473371 original size:119 final size:118
Alignment explanation
Indices: 10473181--10473557 Score: 600
Period size: 119 Copynumber: 3.2 Consensus size: 118
10473171 TTTTGTGTAG
*
10473181 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT--ATTTTTTGAAAATTTATGTT-TAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCA-TTTTTGAAAATTTAT-TTCTAAGGAAA
*
10473243 ATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGATTTCCAA
64 ATTGATATTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAAATTTGATTTCCAA
*
10473299 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTTGAAAATTTATTTCTAAGGAAAAT
* * *
10473364 TGATATTTTCAACTTTTCCTTAAAAATATATTTTTTAAAAATTTGATTTCCAA
66 TGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
*
10473417 GGAAAATTGATGCTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTT-GAAAATTTATTTCTAAGGAAAA
* *
10473482 TTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTGCCAA
65 TTGATATTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTTGATTTCCAA
10473536 GGAAAATTGATACTTTCAACTT
1 GGAAAATTGATACTTTCAACTT
10473558 AAATTGATAC
Statistics
Matches: 240, Mismatches: 14, Indels: 9
0.91 0.05 0.03
Matches are distributed among these distances:
118 97 0.40
119 143 0.60
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.42
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTTGAAAATTTATTTCTAAGGAAAAT
TGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
Found at i:10473436 original size:60 final size:59
Alignment explanation
Indices: 10473181--10473557 Score: 494
Period size: 60 Copynumber: 6.4 Consensus size: 59
10473171 TTTTGTGTAG
* *
10473181 GGAAAATTGATACTTTCAACTTTTCC-CCAAAA-ATATTTTTTGAAAATTTATGTT-TAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAAATTTAT-TTCCAA
* * *
10473238 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TATTTTTTGAAAATTT-ATTTCCAA
*** *
10473299 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAAATTTATTTCCAA
* * *
10473357 GGAAAATTGATATTTTCAACTTTTCCTTAAAAATATATTTTTTAAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAAATTT-ATTTCCAA
* ** * *
10473417 GGAAAATTGATGCTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAAATTTATTTCCAA
* *
10473476 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTGCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATATTTTTTGAAAATTT-ATTTCCAA
10473536 GGAAAATTGATACTTTCAACTT
1 GGAAAATTGATACTTTCAACTT
10473558 AAATTGATAC
Statistics
Matches: 278, Mismatches: 33, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
57 25 0.09
58 45 0.16
59 76 0.27
60 95 0.34
61 37 0.13
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.42
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTGAAAATTTATTTCCAA
Found at i:10473563 original size:19 final size:19
Alignment explanation
Indices: 10473539--10473576 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10473529 TTGCCAAGGA
10473539 AAATTGATACTTTCAACTT
1 AAATTGATACTTTCAACTT
10473558 AAATTGATACTTTCAACTT
1 AAATTGATACTTTCAACTT
10473577 TTCCTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (19 bp):
AAATTGATACTTTCAACTT
Found at i:10473573 original size:79 final size:79
Alignment explanation
Indices: 10473479--10473636 Score: 273
Period size: 79 Copynumber: 2.0 Consensus size: 79
10473469 TTTCTAAGGA
*
10473479 AAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTGCCAAGGAAAAT
1 AAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTTGATTGCCAAAGAAAAT
10473543 TGATACTTTCAACTT
65 TGATACTTTCAACTT
* *
10473558 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAAGAAAATT
1 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTGCCAAAGAAAATT
10473623 GATACTTTCAACTT
66 GATACTTTCAACTT
10473637 TTCCTCAAAA
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
79 74 0.99
80 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (79 bp):
AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTGCCAAAGAAAATT
GATACTTTCAACTT
Found at i:10473578 original size:138 final size:137
Alignment explanation
Indices: 10473420--10473694 Score: 383
Period size: 138 Copynumber: 2.0 Consensus size: 137
10473410 TTTCCAAGGA
* * * *
10473420 AAATTGATGCTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTT-ATTTCTAAGGAAAATT
1 AAATTGATACTTTCAACTTTTCCTCAAAAATACATTTTTCGAAAATTTGATTTCCAAAGAAAATT
***
10473484 GATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTGCCAAGGAAAATTGATA
66 GATACTTTCAACTTTTCCTC-AAAAAT-CCCTTTTTGAAAATTT-ATTGCCAAGGAAAATTGATA
10473548 CTTTCAACTT
128 CTTTCAACTT
** * *
10473558 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAAGAAAATT
1 AAATTGATACTTTCAACTTTTCCTCAAAAATACATTTTTCGAAAATTTGATTTCCAAAGAAAATT
* * *
10473623 GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAATTGATATTT
66 GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTGCCAAGGAAAATTGATACTT
10473688 TCAACTT
131 TCAACTT
10473695 TTCCTTAAAA
Statistics
Matches: 121, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
137 27 0.22
138 55 0.45
139 38 0.31
140 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (137 bp):
AAATTGATACTTTCAACTTTTCCTCAAAAATACATTTTTCGAAAATTTGATTTCCAAAGAAAATT
GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTGCCAAGGAAAATTGATACTT
TCAACTT
Found at i:10473609 original size:198 final size:198
Alignment explanation
Indices: 10473360--10473728 Score: 605
Period size: 198 Copynumber: 1.9 Consensus size: 198
10473350 TTTCTAAGGA
* * *
10473360 AAATTGATATTTTCAACTTTTCCTTAAAAATATATTTTTTAAAAATTTGATTTCCAAGGAAAATT
1 AAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTAAAAATTTGATTTCCAAAGAAAATT
*
10473425 GATGCTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAAGGAAAATTGATACT
66 GATACTTTCAACTTTTCCTCAAAAATCCATTTTT-GAAAATTTATTTCTAAGGAAAATTGATACT
10473490 TTCAACTTTTCCCTAAAAATATTTTTTTTGAAA-ATTTGATTGCCAAGGAAAATTGATACTTTCA
130 TTCAACTTTTCCCTAAAAATATTTTTTTTGAAAGATTTGATTGCCAAGGAAAATTGATACTTTCA
10473554 ACTT
195 ACTT
* * *
10473558 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAAGAAAATT
1 AAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTAAAAATTTGATTTCCAAAGAAAATT
* *
10473623 GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTTATTTCTAAGGAAAATTGATATTT
66 GATACTTTCAACTTTTCCTCAAAAATCCATTTTTGAAAATTTATTTCTAAGGAAAATTGATACTT
* * * *
10473688 TCAACTTTTCCTTAAAATTTTTTTTTTTGAAAGTTTTGATT
131 TCAACTTTTCCCTAAAAATATTTTTTTTGAAAGATTTGATT
10473729 TTCATTTAAA
Statistics
Matches: 157, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
197 59 0.38
198 98 0.62
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (198 bp):
AAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTAAAAATTTGATTTCCAAAGAAAATT
GATACTTTCAACTTTTCCTCAAAAATCCATTTTTGAAAATTTATTTCTAAGGAAAATTGATACTT
TCAACTTTTCCCTAAAAATATTTTTTTTGAAAGATTTGATTGCCAAGGAAAATTGATACTTTCAA
CTT
Found at i:10473626 original size:60 final size:59
Alignment explanation
Indices: 10473558--10473729 Score: 220
Period size: 58 Copynumber: 2.9 Consensus size: 59
10473548 CTTTCAACTT
*
10473558 AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAAGA
1 AAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTTGAAAATTTGATTTCCAAAGA
*** * *
10473618 AAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTGAAAATTT-ATTTCTAAGGA
1 AAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTGATTTCCAAAGA
* * * *
10473676 AAATTGATATTTTCAACTTTTCCTTAAAATTTTTTTTTTTGAAAGTTTTGATTT
1 AAATTGATACTTTCAACTTTTCCTCAAAA-ATTTTTTTTTGAAA-ATTTGATTT
10473730 TCATTTAAAG
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
58 36 0.38
59 22 0.23
60 34 0.35
61 4 0.04
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (59 bp):
AAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTGATTTCCAAAGA
Found at i:10473766 original size:8 final size:9
Alignment explanation
Indices: 10473748--10473785 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
10473738 AGAATAGAAT
10473748 AATAAAAAA
1 AATAAAAAA
*
10473757 AATAATAAA
1 AATAAAAAA
10473766 AAT-AAAAA
1 AATAAAAAA
10473774 AATAAAAGAA
1 AATAAAA-AA
10473784 AA
1 AA
10473786 GAATTTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.28
9 14 0.56
10 4 0.16
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (9 bp):
AATAAAAAA
Found at i:10474633 original size:26 final size:28
Alignment explanation
Indices: 10474603--10474667 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
10474593 TAATTAGAAC
*
10474603 AGATAAATAAAA-AA-AGATATATTA-T
1 AGATAAATAAAATAACAGATATATAATT
10474628 AGGATAAATAAAATAACAGATATATAATT
1 A-GATAAATAAAATAACAGATATATAATT
10474657 AGATAAATAAA
1 AGATAAATAAA
10474668 TATACAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
25 1 0.03
26 11 0.31
27 2 0.06
28 19 0.54
29 2 0.06
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (28 bp):
AGATAAATAAAATAACAGATATATAATT
Found at i:10474686 original size:18 final size:17
Alignment explanation
Indices: 10474659--10474750 Score: 73
Period size: 18 Copynumber: 5.2 Consensus size: 17
10474649 ATATAATTAG
10474659 ATAAAT-AAATATACAAA
1 ATAAATAAAATATA-AAA
10474676 ATAAATAAAATAT-AAA
1 ATAAATAAAATATAAAA
10474692 AT-AATAATAATATAATAA
1 ATAAATAA-AATATAA-AA
* *
10474710 ATAAATTATAATATAATA
1 ATAAA-TAAAATATAAAA
*
10474728 ATAATATATAACTATATAAA
1 ATAA-ATA-AAATATA-AAA
10474748 ATA
1 ATA
10474751 CATATACATA
Statistics
Matches: 61, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
15 5 0.08
16 10 0.16
17 7 0.11
18 17 0.28
19 15 0.25
20 7 0.11
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAATAAAATATAAAA
Found at i:10474699 original size:3 final size:3
Alignment explanation
Indices: 10474679--10474812 Score: 54
Period size: 3 Copynumber: 44.7 Consensus size: 3
10474669 ATACAAAATA
*
10474679 AAT AA- AAT -AT AA- AAT AAT AAT AAT -AT AAT AAAT AAAT TAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT
*
10474722 -AT AAT AAT AAT ATAT AACT ATAT AA- AAT ACAT -AT ACAT ATT AAT
1 AAT AAT AAT AAT A-AT AA-T A-AT AAT AAT A-AT AAT A-AT AAT AAT
* * * *
10474766 AGAA AAG AA- AAA AAT AAA AAT -AT ACAT -AT AAT AAT AAT AAAT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT -AAT AAT
10474811 AA
1 AA
10474813 AACACATAAA
Statistics
Matches: 103, Mismatches: 9, Indels: 38
0.69 0.06 0.25
Matches are distributed among these distances:
2 20 0.19
3 56 0.54
4 26 0.25
5 1 0.01
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:10474711 original size:30 final size:30
Alignment explanation
Indices: 10474675--10474735 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
10474665 AAATATACAA
10474675 AATAAATAAAATATAAAATAATAATAATAT
1 AATAAATAAAATATAAAATAATAATAATAT
* *
10474705 AATAAATAAATTATAATATAATAATAATAT
1 AATAAATAAAATATAAAATAATAATAATAT
10474735 A
1 A
10474736 TAACTATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (30 bp):
AATAAATAAAATATAAAATAATAATAATAT
Found at i:10474814 original size:30 final size:29
Alignment explanation
Indices: 10474698--10474814 Score: 66
Period size: 30 Copynumber: 3.9 Consensus size: 29
10474688 TAAAATAATA
*
10474698 ATAATATAAT-A-AATAAATTATAATATAAT
1 ATAATATAATAATAATAAATAATAA-A-AAT
* *
10474727 AATAATAT-ATAACTATATAAAATACATATACAT
1 -ATAATATAATAA-TA-AT-AAATA-ATAAAAAT
* *
10474760 ATTAATAGAA-AAGAA-AAA-AATAAAAAT
1 A-TAATATAATAATAATAAATAATAAAAAT
10474787 ATACATATAATAATAATAAATAATAAAA
1 ATA-ATATAATAATAATAAATAATAAAA
10474815 CACATAAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 24
0.67 0.09 0.24
Matches are distributed among these distances:
26 2 0.03
27 12 0.18
28 5 0.08
29 8 0.12
30 15 0.23
31 1 0.02
32 3 0.05
33 11 0.17
34 6 0.09
35 3 0.05
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (29 bp):
ATAATATAATAATAATAAATAATAAAAAT
Found at i:10474822 original size:39 final size:38
Alignment explanation
Indices: 10474690--10474823 Score: 91
Period size: 38 Copynumber: 3.5 Consensus size: 38
10474680 ATAAAATATA
* * * *
10474690 AAATAATAATA-ATATAATAAATAAATTATAAT-ATAAT
1 AAATAATAAAACAAATAAAAAATACA-TATAATAATAAT
* * *
10474727 A-ATAATATATAAC-TATATAAAATACATATACATATTAAT
1 AAATAATA-A-AACAAATAAAAAATACATATA-ATAATAAT
*
10474766 AGAA-AAGAAAA-AAATAAAAATATACATATAATAATAAT
1 A-AATAATAAAACAAATAAAAA-ATACATATAATAATAAT
*
10474804 AAATAATAAAACACATAAAA
1 AAATAATAAAACAAATAAAA
10474824 TACAAAAGAA
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
36 6 0.08
37 8 0.11
38 35 0.47
39 22 0.29
40 3 0.04
41 1 0.01
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (38 bp):
AAATAATAAAACAAATAAAAAATACATATAATAATAAT
Found at i:10474887 original size:19 final size:17
Alignment explanation
Indices: 10474827--10474870 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
10474817 CATAAAATAC
* *
10474827 AAAAGAAAAGAAAGAAAG
1 AAAA-AAAATAAAAAAAG
10474845 AAAAAAAATAAAAAAAG
1 AAAAAAAATAAAAAAAG
10474862 AGAAAAAAA
1 A-AAAAAAA
10474871 ATAATACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (17 bp):
AAAAAAAATAAAAAAAG
Found at i:10476495 original size:889 final size:892
Alignment explanation
Indices: 10475040--10484795 Score: 12013
Period size: 890 Copynumber: 10.9 Consensus size: 892
10475030 CCGTCCGCCC
* ** * * ** * * * ***
10475040 GTTCGTTCCCAGTCTAAGATCAAATCGGATCGAGTGTTGTGGCAGCAAGATCGACAACATATAGA
1 GTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGA
** * * * * * * * * * *
10475105 GGGGGACCCGGTTGATCCTCGGCTTGCACATCCTGCCCCTTTGGCTGACTAAGCGCCCACACGCT
66 GGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
10475170 CGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCTAGTCTAAGCATACGGAATTGATTCCT
131 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
10475234 AGTCTAAGATCAGACC-GAACCGAGGGTTGCGCCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
196 AGTCTAAGATCGGACCGGAA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * ** * *
10475298 CCACTTTTTTCTTCATCAGGGCACCATCGCCGGAGCATCACCGGAGATCCTGACCGACGGCATTA
260 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
10475363 GGATTCCGACGATCGGGGGGGCCGGGCGGGTGTGCGTACATGATGTGCGATGGGTGCTGGAACTT
325 GGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
10475428 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCCTCTTAAAAAGCATT
389 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
10475493 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAA
454 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAA
* *
10475557 ATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAAT
518 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
*
10475622 ACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
583 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
**
10475687 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCTTGCCATGAAACTTCACGT
648 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * **
10475752 GAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCGTAAAAATGGCATTGGCACACAGAAATAT
713 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * * *
10475817 GAAGATGTGCCTAAACACATCTTCCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
778 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
10475882 CGACGTAGT-GCCCGCCCGTTCATTTCGTCGTTTGGCTTAGGCATATGGA
843 CGACGTAGTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
10475931 GTTCATTCCCAGTCTCAGATTGAATCGGACCGAGGGTTGCAGCAACAGGAT-GGTAGCACGCAGA
1 GTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGA
* * ** * * * *
10475995 GGGGGACCCGACCGATCCCCAACTTGGGCATCCCGCCCATCGGGCCAGCTGAGCGCCCGGACGCT
66 GGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * *
10476060 TGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGCCTAAGCATATGGAGTTCGTTCCC
131 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * ** *
10476125 CGTCTAAGATCGGACCGGAATGAGGGTTGCAGCAGCACATGCCAGCCTCGGGCATGTGCTGGTGC
196 AGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
10476190 CGCATTTTTCTCCGTTGGGGCACCATCGCCAGAGCATCGCCAGAGAACCTGACCGACGGCATTGG
261 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* ** * * *
10476255 GGTTTCGACGATCGAAGGGGCCAGGGGGTG-GCACACATGATGTGCGATGGGTGCTGATACTTGG
326 GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
10476319 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATGTG
391 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
10476384 AGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATG
456 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
10476449 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATAAA
521 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * ** * * * *
10476514 AGGATTACCTCTACCAAGTTTGGACCCAAAACTCCTTTCAAAAAAATTTTAAAAACTCCCGAACC
586 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
* ** * *
10476579 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAA
651 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
** * *
10476644 GGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTAGCATGCAAAAATATGAA
716 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* **
10476709 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTCACCGA
781 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
10476774 CGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
846 CGTAGT---CGCCCGCCCGT----TCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
10476828 GTTCATTCCCAGTCTAAGGTTGGA-CAGGACCAAGGGTTGCGGTAGTAGGATCGCCAGCACGTAG
1 GTTCATTCCCAGTCTAAGATTGAATC-GGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAG
* * * *** **
10476892 AGGGGGACCCAGTCGATCCCCGACTTGCGCATCTTTCCCCTCTGGCCGGCTGAGCGCCCGCAAAC
65 AGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
10476957 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-C--AG--------
130 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
10477010 -A--C------CGGA---G--CGAGGGTTGTGCCAGCACATGCTGGGCTCGGGCATGTTCTGGTG
195 CAGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *** ** *
10477061 CC-CTATTTTTCTTCGTCGAGGCACCATCACCGGAGTATTACCGGAGAACCTGATTGATGGCATT
260 CCGC-ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* *
10477125 GGGGTTTCGGA-GATCGGGGGGGCCGGGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTA
324 GGGG-TTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
10477189 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCAAACCCCCTTAAAGAGC
386 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
10477254 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAATGGGGACACTTTTTTC
451 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
10477319 AAATAGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAA
516 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
10477384 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAGCTCCTTCC-AAAAATATTTTAAAAAATCA
581 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCC
* * *
10477448 TGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
645 TGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
10477513 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
710 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
10477578 TATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCAACTGCTTGCGCATCCCCTCTCTCT
775 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
10477643 GGCCGGCGTAGTTCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
840 GGCCGACGTAG-T--CG--C-C-CGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * * * * *
10477703 GTTCATTCCCAATCTAAGATCTGACT-GGATTGAGGTTTGTAGCAGCAAGATCGGGAGCACGTAG
1 GTTCATTCCCAGTCTAAGAT-TGAATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAG
* * * * * * *
10477767 AGGGGGACCCGGTCGCTCCTCGTCTTATGCATCCCGGCCCTCTGGCCGGCTGAGTGCCCGCACGC
65 AGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * **
10477832 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCC
130 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * **
10477897 TAGTCTAACATCGGACCGG-TCTGAGGGTTACGACAGCACATGCTGGGCTTAGGCATGTGCTGGT
195 CAGTCTAAGATCGGACCGGAAC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
*
10477961 GCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
259 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
** * * *
10478026 ATGGTTCCGATGATC-----GG--GGGGGGTCTGCGCACATGATGTGCGGTGGGTGCTGGTACTT
324 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * * * * * *
10478084 GGCCCTTATATTGGCCCCCTATCCCTCATTAAATCTTGAGAACTAACATCCCTTTAAAAAGCACT
389 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
10478149 TAAGATTTTACAGGTTTGCTCCCAGTAGCCAGTAAAGTGT-TCGAAATGGGGACACTTTTTTCAA
454 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAA
***
10478213 ATGGTCACAAAATCTTGTACACTTTTCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
518 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
10478278 ACAAGGATCACGTCTACCAGGTTTGGGTCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGA
583 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
*
10478343 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
648 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
10478408 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
713 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
*
10478473 GAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
778 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
10478538 CGGCGTAGT-GCCCGCCCGCTCATTTCGTCGTTTGGCTTAGGCATACGGA
843 CGACGTAGTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * * *
10478587 GTTCATTCCCAATCTTAGATCGAA-CTAGATCAAGGGTTGCAGCAACAAGATCGACAGCACACAG
1 GTTCATTCCCAGTCTAAGATTGAATC-GGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAG
* * * * * *
10478651 A-GGGGACCTGGCCGATCTCCGACTTGCGCATCCCGCCCATCTGGCTGGCTGAGCGCCCGGACGC
65 AGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
10478715 TTGTTTCGTAGGTTGACTTAAGG-ATACGGAGATCATTCCCAGCCTAAGCATACGGAGTTCGTTC
130 TCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * * *
10478779 TCCA-TCTACGATCAGG-CCGGAATGAGGGTTACGGCAACACATGCCGGCCTCGAGCATGTGCTA
194 -CCAGTCTAAGATC-GGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
10478842 GTGCCGCATTTTTCTCCGTCGGAGCACCATCGCCGGAACATCGCCGGAGAACCTGACCGATGGCA
257 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
10478907 TTGGGGTTCCGACGATCGGAGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
322 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
10478972 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGATAAATCACACCCCCTTAAAGAGCA
387 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
10479037 TTTGAGATTTTACAGGATT-CTTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTC
452 TTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
10479101 AAAT-GTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAA
516 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
10479165 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACAT-CTTTCGAAAAAATTTTAAAAAAT-C
581 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
10479228 TCAGACCGCAAAAGGTTTTAAAAATCATGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
645 TGA-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
10479293 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA--CAG--
709 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
10479354 --A-GAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT-CCGTCTCTT
774 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
10479415 TGGCCGGCGTAGTTCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
839 TGGCCGACGTAG-T------CGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
10479476 GTTCATTCCTAGTCTAAGATCCG-ACCAGACCGAGGGTTGCAGTAGTAGGATCGGGAGCACGCAG
1 GTTCATTCCCAGTCTAAGAT-TGAATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAG
* * * * * *
10479540 AGAGGGACCTGGCCGATCCCCGTCTTACGCATCCCGCCCCTCTAGCTGGCTGAGTGCCCGCACGC
65 AGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
** **
10479605 TCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCC
130 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * ** * *
10479670 TAGTCTAACATCGGACCGGTCCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTG
195 CAGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
10479735 CCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAATCTGTCCGACGGCATTG
260 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* ** * * *
10479800 TGGTTCCGGTGAAT--GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGTTGGGTGCTAGTAGTT
325 GGGTTCCGACG-ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * * * * *
10479863 GGCCCTTATATTGGTCTCCTATCCCTCATTAAATCTTGAGAACTCACACCCCCTTAAAAAGCACT
389 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
10479928 TAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
454 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
10479993 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
519 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
10480058 CAAGCATCACGTCTACCAGGTTTGGGTCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCCTGAA
584 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
*
10480123 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
649 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * ** *
10480188 AAGGCTTAAGGAACCATTGTATGAATTTAGAAGCCGTAAAAATGGCATTGGCACACAAAAATATG
714 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * *
10480253 AAGATGTGCCTAAACCCATCTTCCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGGCC
779 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * ** * *
10480318 GGCGTAGT-GCCCACCCGTTTATTTCGTCGTTTGGCTTAGGCATACGAA
844 GACGTAGTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * ** * *
10480366 GTTCATTCCCAGTCTCAGATCGAACCGGACTGAGGATTGTGGCAACAGGATCGGTAGCACGCAGA
1 GTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGA
* * * * *
10480431 GGGGGACCCGGTCGATCCCCGACTTACGCATCCCACCCATCTGGCCAGCTGAGCGCCCGGACGCT
66 GGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * *
10480496 TGTTTCGTTGGTTGACTTAGGGATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCGTTCCC
131 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CC
* * * * * *
10480561 CA-TCTAAGATCAGACCGAAACGAGGGTTGCGGTACCACATG-TCAGCCTCGGGCATGTGCTGGT
195 CAGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGT
** * * * *
10480624 GCTACAATTTTCTCCGTCGGGGAACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATT
259 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
* * * * *
10480689 GGGGTTCCGGCGATCGGAGGGGCCGGGAGGTGTGCGCACATGATGTGTGATGGTTGCTGGTACTT
324 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
10480754 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATG
389 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * * *
10480819 TGAGATTTTACAGGTTTCCTGCTAGTAGGCATTAAAGTGTCTTAAATAGGGACACTTTTTTCAAA
454 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* **
10480884 TGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTACGCATGCCAACAAAAATA
519 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* ** *
10480949 CAAGGATCACGTCTACCAAATTTGGGGCCAAAAAACCTTCC-AAAAAATTTTAAAAAATCCTGGA
584 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
*
10481013 CCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
649 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
***
10481078 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
714 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
*
10481143 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCC
779 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
10481208 GACGTAGTTCTCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
844 GACGTAG---TCGCCCG----CCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
10481264 GTTCATTACCAGTCTAAGATCTG-ATCGGGA--TAGGGTTGCAGCAACAAGATCCGG-AGCATGC
1 GTTCATTCCCAGTCTAAGAT-TGAATC-GGACCGAGGGTTGCAGCAGCAGGAT-CGGCAGCACGC
* * * *
10481325 AGAGGGGGACCCGGTCGATCCCCGTCTTACGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCAC
63 AGAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * **
10481390 GCTCATTTTGTGGGTTGACTTATGCATACAGAGTTCATTCGTAGTCTAAGCATACGGAGTTCATT
128 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * ** * * * *
10481455 CCTAGTCTAACATCAGACCAGTTCGAAGGTTACGGCAGCACATGCTAGGCTCAGGCATGTGCTGG
193 CCCAGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
10481520 TGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCAT
258 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* * * *
10481585 TGTGGTTCCGATGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
323 TGGGGTTCCGACGATCGG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
10481650 TTGGCCCTTATATTGGCCCCCTATCCCTCATTAAATCTCAAGAACTCACACCCCCTTAAAAAGCA
387 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
10481715 CTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCA
452 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
10481780 AATGGTCATAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
517 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
10481845 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCT
582 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCT
* * * * * *
10481910 -AACCACAAAAAGTTTCAAAAATCGTGAACAATGGAAAATGAGTTGTCTTGCCATGAAACTTCAC
646 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
10481974 GTGAAGGCTTAAAGGACCATTGTATGAATTTACATGCCATAAAAAATGGCATTGGCATGCAGAAA
711 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGAAA
* *
10482039 TATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
775 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
10482104 GGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGA
840 GGCCGACGTAGT---CGCCCGCCCGT--------TCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * ** * * * * *
10482168 GTTCATTCCGAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAAGATTGACAGCATGCAGA
1 GTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGA
** * * * * * * *
10482233 ACGGGACCCGACTGATCCCCGACTTGCGCATCGCACCCCTCTGGCTGGCTGATCGCCCGCACGCT
66 GGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
10482298 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGGCTAAGCATACGAAGTTCATTCCC
131 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * ** * **
10482363 AGTCTAAGATCGGACCAGATCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCATGTAATGGTGC
196 AGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * ** *
10482428 GGCATTTTTCTTCATCGTGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
261 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * *
10482493 GGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGG
326 GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
10482558 CCCTTATATTGGCCACCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
391 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
10482623 AGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTG-GTGAAAATGGGGACACTTTTTTCAAAT
456 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAAT
* * *
10482687 GGTTACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTCCATGCCAACAAAAATAC
520 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* ** * **
10482752 AAGGATCACATCTACCAAGTTTGGGTTCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAAC
585 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
* *
10482817 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGA
650 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*** * *
10482882 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCACACAAATATTA
715 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * * *
10482947 AGAAT-TGCCTAAACCGACCTACCACCCTATCGATCCACGGGTTGCACATCCTGTCTCTCTGGTC
780 AG-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
10483011 GATGTAGTGCTGGCCCACCCGCCCGCCTGCTTGTTTCATCGGTTGGCTTAGGCATGCGGA
844 GACGTAGT-C--G----CCCGCCCG--T--TCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
10483071 GTTCATTCCTAGTCTAAGA-TCAAACTGGAGCGAGGGTTG-TGACAGCAGGATCGACAGCATGTA
1 GTTCATTCCCAGTCTAAGATTGAATC-GGACCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCA
** * * ** * * *
10483134 GAGGGGGACCCGATCGATCCTCGGCTTGTGCATCCTGCCCTTCTGGCCGGCTGAGCGCCCGTACG
64 GAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * *
10483199 CTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATATGGGGTTCATTC
129 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
10483264 CCAGTCTAAGATCGAACCGGAACGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA-ATGCTGGT
194 CCAGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * ** * * * * *
10483328 GCTGCATTTTTCTTCCTCGGGGCACCATCGTTGGAGCATCGTTGGAGAACCTGATCGGCCGTATT
259 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
** * * *
10483393 GGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTTTGCACACATGATGTGCGATGGGTGCTGGTACT
324 GGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
10483458 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAATTCACACCTCCTTAAAGAGCAT
388 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
10483523 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
453 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
10483588 ATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTACATACCAAAAAAAAA
518 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAA
* * *
10483653 TACAAGGGATCATGTCTACCAAGTTTGGGGGCCAAAACCCCTT-CGAAAAAA-TTAAAACAAAT-
582 TACAA-GGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAAATTTTAAA-AAATC
* * *
10483715 CAGAAACCACAAAAAAGTTTCAAAAATCATG-AAAATA-AAAAC-AGTCATCTTCGGCCCATGAA
644 CTG-AACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT--G-CCATGAA
* * ** * * *
10483777 ACTTGAATGTGAACACTTAA-AGCCCAATTTTAT-AATTTACAAAGCCATAAAAATGGGCATTGG
704 ACTT-CACGTGAAGGCTTAAGGGACC-ATTGTATGAATTTAC-AAGCCATAAAAAT-GGCATTGG
* * *
10483840 CATGCAAAAATCATGAAAGATTGTGCCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTG
765 CATGCAGAAAT-ATG-AAGA-TGTG-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
10483905 CATCCCGTTTCTCTGGCCGACGTAGT-GCCCGCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATAC
826 CATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCG-TTCGTTTCGTCGGTTGGCTTAGGCATAC
*
10483968 AGA
890 GGA
* ** ** *
10483971 GTTCATTCCCAATCTAAGA-CCAGATCGGACCTGAGGGTTGCAGCAGCAGGATCGATAGCACGTA
1 GTTCATTCCCAGTCTAAGATTGA-ATCGGACC-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCA
* * * * * * ** *
10484035 AAGGGGGACCTGCCCAATCCTCGGCTTACGCATCCCATCCCTCTGGCTGGCTGAGCGCCCGCACG
64 GAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
10484100 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTC
129 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
10484165 CCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCAAGTGCTGG
194 CCAGTCTAAGATCGGACCGGAA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * **
10484229 TGCCGCATTTTTCTTCGTCGAGGCACCATC-CTCGAAGAATCGTCGGAGAACCTGACCGGTGGCA
258 TGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATCGTCGGAGAACCTGACCGACGGCA
* * *
10484293 TTGGGGTTCCGGCGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTAC
322 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
10484357 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCA
387 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
10484422 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
452 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
10484487 AATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCT-TATTTTTTTGTGCATGCCAACAAAAA
517 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * **
10484551 TACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTTCTTTCGAAAAAATTTTAAAAAATCCCA
582 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTG
* * *** * *
10484616 AACTGTAAAAAGTTTTTTAAATCGTGAAAAATTAGAAAACGAGTCATCTTGCCA-GAAACTTCAC
647 AACCGCAAAAAGTTTCAAAAATCATGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCA-
* *
10484680 CGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
710 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
10484745 TATGAAGATGGGCCGAAA-CCACCTACCACCTTATCGATCCACGGCTTGCGC
775 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
10484796 NNNNNNNNNN
Statistics
Matches: 7651, Mismatches: 1028, Indels: 373
0.85 0.11 0.04
Matches are distributed among these distances:
871 1 0.00
872 101 0.01
873 4 0.00
874 13 0.00
875 618 0.08
876 5 0.00
877 6 0.00
878 1 0.00
879 8 0.00
881 20 0.00
882 49 0.01
883 221 0.03
884 89 0.01
885 1 0.00
886 1 0.00
887 3 0.00
888 6 0.00
889 932 0.12
890 1225 0.16
891 466 0.06
892 467 0.06
893 20 0.00
894 9 0.00
895 18 0.00
896 80 0.01
897 420 0.05
898 452 0.06
899 136 0.02
900 365 0.05
901 290 0.04
902 160 0.02
903 546 0.07
904 447 0.06
905 299 0.04
906 52 0.01
907 38 0.00
908 16 0.00
909 4 0.00
910 4 0.00
911 2 0.00
912 56 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GTTCATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCGGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
Found at i:10477889 original size:26 final size:26
Alignment explanation
Indices: 10477853--10477911 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
10477843 GTTGACTTAG
* *
10477853 GCATACAGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10477879 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10477905 -CAT-CGGA
1 GCATACGGA
10477912 CCGGTCTGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:10479662 original size:26 final size:24
Alignment explanation
Indices: 10479633--10479684 Score: 77
Period size: 26 Copynumber: 2.1 Consensus size: 24
10479623 TAGGCATATA
10479633 GAGTTCATTCATAGTCTAAGCATACG
1 GAGTTCATTCATAGTCTAA-CAT-CG
*
10479659 GAGTTCATTCCTAGTCTAACATCG
1 GAGTTCATTCATAGTCTAACATCG
10479683 GA
1 GA
10479685 CCGGTCCGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.16
25 3 0.12
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (24 bp):
GAGTTCATTCATAGTCTAACATCG
Found at i:10481449 original size:26 final size:26
Alignment explanation
Indices: 10481413--10481471 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
10481403 GTTGACTTAT
*
10481413 GCATACAGAGTTCATTCGTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
10481439 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
10481465 -CAT-CAGA
1 GCATACAGA
10481472 CCAGTTCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:10482355 original size:26 final size:26
Alignment explanation
Indices: 10482318--10482370 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10482308 GTTGACTTAG
*
10482318 GCATACGGAGTTCATTACCAGGCTAA
1 GCATACGAAGTTCATTACCAGGCTAA
* *
10482344 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGGCTAA
10482370 G
1 G
10482371 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGGCTAA
Found at i:10483259 original size:26 final size:26
Alignment explanation
Indices: 10483221--10483273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10483211 GTTGACTTAG
*
10483221 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
10483247 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10483273 G
1 G
10483274 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:10484159 original size:26 final size:26
Alignment explanation
Indices: 10484122--10484174 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10484112 GTTGACTTAG
10484122 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10484148 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
10484174 G
1 G
10484175 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10488088 original size:870 final size:868
Alignment explanation
Indices: 10486178--10495846 Score: 11183
Period size: 870 Copynumber: 11.1 Consensus size: 868
10486168 AGTGCCCGCC
* * * *
10486178 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGCTCATTCCCAG-CTAAGATCGGCAT-GGACC
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACC
* * * * * *
10486241 GAGGGTTACGGTAGCACATACTGGGTTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTC--GG-
65 GAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * *
10486303 AGCAT---C---G--C--CAGAGAACCTGACCGGCA-ACATTGGGGTTCCCACGATCAGGGGGG-
129 ACCATCACCGGAGCACGTCGGAGAACCTGACCGG-AGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
10486356 CGGGAGGGGTGTGTGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
193 CGGG-GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
10486421 TCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
10486486 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
10486551 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGCCTACCAAAT
387 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * * ** *
10486616 TTCCTACGAAAAATATTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
452 TTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
* * * * * *
10486681 TTAAAAAATAGAAAACGAGTCGTTTTCCCATGAAACTTCACGTAAAGGCTTCAGGGACCATTGTA
517 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
10486746 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAATTATGAAGATGTGCCCAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
10486811 ACCATCCTATCCATCCATGGCTTTCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG
647 ACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG
* * *
10486876 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACAAAGATCAAACCGGACTGA
712 CCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
** * **
10486940 GGGTTGCGGCAGCAGGATCGGCAGCATACAGAGTGGGAATCGACCGATCTCCGGCTTGCGCATCC
777 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCGGCTTGCGCATCC
* * **
10487005 CTCCCCTCTGGCTGGCTGAGTGCCTGCA
841 CTCCCCTCTGGCCGGCTGAGCGCCCACA
* *
10487033 CGCTTGTTTCGTGGGTTGACTTAGG-ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
* * * *
10487097 AGGGTTGGGGCAGCACATGCTAGGCTCGGCCATGTGCTGGTGCTGCATTTTGCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* *
10487162 CCATCACCGGAGCCACGTTGGAGAACCTAACCGGAGGCATTGGGGTTCCGGA-GATCGGGGGGGC
130 CCATCACCGGAG-CACGTCGGAGAACCTGACCGGAGGCATTGGGGTTCC-GACGATCGGGGGGGC
10487226 CGGGAGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
193 CGGG-GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
10487291 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
10487356 CCAGTAGCCATTAAAGTGTTTGAAATGGAGACACTTTTTTGAAATGGTCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
10487421 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGCCTACCAAAT
387 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * * ** *
10487486 TTCCTACGAAAAATATTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
452 TTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
* * * * * *
10487551 TTAAAAAATAGAAAACGAGTCGTTTTCCCATGAAACTTCACGTAAAGGCTTCAGGGACCATTGTA
517 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
10487616 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAATTATGAAGATGTGCCCAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
10487681 ACCATCCTATCCATCCATGGCTTTCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG
647 ACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG
* * *
10487746 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACAAAGATCAAACCGGACTGA
712 CCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
* ** * ** * *
10487810 GGGTTGCGGTAGCAGGATCGGCAGCATACAGAGTGGGAATCGGCCGATCTCCGACTTGCGCATCC
777 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCGGCTTGCGCATCC
* *
10487875 CTCCCCTCTGGCCGGCTGAGTGCCCGCA
841 CTCCCCTCTGGCCGGCTGAGCGCCCACA
*
10487903 CGCTCGTTTCGTGGGTTGACTTAGG-ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCC
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CC
* * * * *
10487967 GAGGGTTGGGGCAGCACATGCTAGGCTCGGCCATGTGCTGGTGCTGCATTTTGCTTTGTC-GGGC
65 GAGGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
10488031 ACCCATCACCGGAGCCACGTTGGAGAACCTAACCGGAGGCATTGGGGTTCCGA-GATCGGGGGGG
129 A-CCATCACCGGAG-CACGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGG
10488095 CCGGGAGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
192 CCGGG-GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
10488160 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
10488225 GCCAGTAGCCATTAAAGTGTTTGAAATGGAGACACTTTTTTGAAATGGTCACAAAATCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
10488290 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAG
386 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * ** * *
10488355 TTTGGGGCCAAAAC-GCATTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAGGTTTTGAAAA
451 TTTCGGACCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
* *
10488419 TCTTGAAAAATAGAAAACGAGTCGTCTT-CTCATGAAACTTAACGTGAAGGCTTAAGGGACCATT
515 TCGTGAAAAATAGAAAACGAGTCGTCTTGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
10488483 TTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGGACATGTGCCTAAACCCA
579 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
10488548 CCTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGC
644 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCAC
* * * **
10488613 CCGCCCGCCCACTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTGCCAGTCTAAGATTGG
705 CCGCCCG--C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
10488678 ACCAGG-CTGAGGGTTGCGACAGCAAGATCGGTAGCACGCAG-CGGGG----GATC---CCCGGC
767 ACC-GGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGC
* * * * * *
10488734 TTGTGCGTCCCTCCCCTCTAGCCAGCTGAGCGACCGCA
831 TTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCACA
* * * * * *
10488772 CGCTCGTTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCCCA-TCTAATATCAGATCAGATC
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGATCGGACC
* * * * * * *
10488836 GAGGGTTACGGTAGCACATGCTGGACTCGGGCATTTGTTGGTGCCGTATTTTTCTTCATCGGGGC
65 GAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* ** * * * * * *
10488901 ACCATCATCAAAGCATTGCCGGAGAACCTGACC-GATAGCATTGGGATTCCGGCGATCGGAGGGG
129 ACCATCACCGGAGCA-CGTCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGACGATCGGGGGGG
** *
10488965 CCGGGGGGGATGTGCGCACATGATGTGCAATGGGTACTGGTACTT-GCCCTTATATTGGCCCCCT
192 CCGGGGGGG-TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
10489029 ATCCCTCATCAAACCTCGAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
256 ATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
10489094 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAATTCTTGTAC
320 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
10489159 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACATCTACCAA
385 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * *
10489224 GTTTCGCACCAAACCTGCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
450 GTTTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
* * *
10489289 TCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTG
515 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
10489354 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
10489419 CAACCACCCTATCGATCCACGGCTTACGCATCCCATGTCTCTGGCCGGCGTAGTGCCCGCCCACC
645 CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCACC
* *
10489484 CGCCCGACCGTTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAA
706 CGCCCG-CC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC--A
** *
10489549 CTGAACCAAACTGAGGGTTGCGAG-AGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
766 --G-ACCGGACTGAGGGTTGCG-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * *
10489613 CTGGCTTGCGCAT-CCTGTCCCTCTTGCCGGTTGAGCGCCCACA
827 C-GGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCACA
* *
10489656 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAG--CATA-CGGA--G
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
**** *** * * **
10489716 TTCATT-C-GCAGTCTGGTGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGC
66 AGGGTTGCGGCAG-CACATGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * ** *
10489779 ACCGTCACCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATTGAAAGGGT
129 ACCATCACCGGAGCA-CGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCG-GGGGGG
*
10489844 CGGGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
192 CCGGGGGG-GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
10489909 ATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
10489974 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
10490039 CTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
386 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
10490103 TTTAGGGCCCAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTTGAAAAT
451 TTTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
10490168 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
516 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
10490233 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
10490298 AACCACCCTATCGATCCACGGCTTACGCATCCCATGTCTCTGGCCGGCGTAGTGCCCGCCCACCC
646 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCACCC
* *
10490363 GCCCGACCGTTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAAC
707 GCCCG-CC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC--A-
** *
10490428 TGAACCAAACTGAGGGTTGCGAG-AGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
766 -G-ACCGGACTGAGGGTTGCG-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
* * *
10490492 TGGCTTGCGCAT-CCTGTCCCTCTTGCCGGTTGAGCGCCCACA
828 -GGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCACA
* *
10490534 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAG--CATA-CGGA--G
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
**** *** * * **
10490594 TTCATT-C-GCAGTCTGGTGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGC
66 AGGGTTGCGGCAG-CACATGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * ** *
10490657 ACCGTCACCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATTGAAAGGGT
129 ACCATCACCGGAGCA-CGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCG-GGGGGG
*
10490722 CGGGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
192 CCGGGGGG-GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
10490787 ATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
10490852 GCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
10490917 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACATCTACCAAG
386 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * *
10490982 TTTCGCACCAAACCTGCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
451 TTTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* * *
10491047 CGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGT
516 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
10491112 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * *
10491177 AACCACCCTATCGATCCATGGCTTACGCATCCCATGTCTTTGGCCGGCGTAGTGCCCGCTCGCCC
646 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-CACCC
*
10491242 GCCCGACTGCTAGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
707 GCCCG-C--CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC--A-
* *** * *
10491307 TGAACCGAACTGAGGGTTGCAAAAGTAGGATCGGCAGCACGCAGAGGGGGTCCCGACCGATCCCC
766 -G-ACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCC
* * *
10491372 GGCTTGCGCAT-CCTGTCCCTCTCGCCGGTTGAGCGCCCACA
828 GGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCACA
* * *
10491413 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTTTAAG--CATA-CGGA--G
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
**** *** * * **
10491473 TTCATT-C-GCAGTCTGGTGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGC
66 AGGGTTGCGGCAG-CACATGCTGGGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * ** *
10491536 ACCGTCACCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATTGAAAGGGT
129 ACCATCACCGGAGCA-CGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCG-GGGGGG
*
10491601 CGGGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
192 CCGGGGGG-GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
10491666 ATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
10491731 GCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
10491796 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACATCTACCAAG
386 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * *
10491861 TTTCGCACCAAACCTGCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
451 TTTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* * *
10491926 CGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGT
516 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
10491991 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
10492056 TACTACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCC
646 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG-CC
* * *
10492121 GCTTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGAT
710 -C--G--C-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * *
10492186 CGGA-TCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGGCCCGACCGATCCCCGACT
769 CGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCT
* * * *
10492250 TGCGCATCCCGCCCCTTTGGCCGGTTGAGCGCCCGCA
832 TGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCACA
10492287 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCGAAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTC----G-TG-----GG--T-T-GA---C-TT---AG-----GCATACGGAGTTCAT
* * ** *
10492352 TCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAACAGCACATGCTGGGCTCAGGCATGTGTTG
40 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTG
* * * * * * *
10492417 GTACCGTATTTTTCTTCGTTGAGGCACCAT----------CGTCAGAGAACTTGACCGGCGGCAT
104 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCACGTCGGAGAACCTGACCGGAGGCAT
* * * * * * * *
10492472 TAGGGTTCTGGCGATCGGGGGGGGCC-GGGGGGTGTACGTACATGATTTGCGATGGGTACTGGTA
169 TGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
* *
10492536 CTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGC
233 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
10492601 ATTTGAGATTTTATAGGTTTACTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACATTTTTC
298 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
10492666 AAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
363 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * * * * *
10492731 ATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACACCTTCCAAAAAAATTTTAAAAAAGCCC
428 ATACAAGGATCACGTCTACCAAGTTTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCC
* * * * *
10492796 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAA
493 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
10492861 GTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCACAAAAAAGGCATTGGCACGCAGAAAT
558 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
10492926 ATGAAGATGTGCCTAAACCCTCCTACCACCTTATCGATCCATGGCTTACGCATCCCGTCTCTCTG
623 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTG
* **
10492991 GCCGACGTAGTG----CTCGCCCG-CTCGTTTCGTCGGTTCACTTAGGCATACGGAGTTCATTCC
688 GCCGACGTAGTGCCCACCCGCCCGCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* ** * ** * * * * *
10493051 TAGTCTAAGATTGGACTGGACTGAGGGTTATGGCAGTAGGATCGACAGCACGCAAAAGGGTACCC
753 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * *
10493116 GACCGATCCCCAGCTTGCGCAT-CCTGCCCCTGTGACCGGCTGAGCGCCCACA
818 GACCGAT-CCCGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCACA
*
10493168 CGCTCG-TTCTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
1 CGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A
*
10493232 TTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCT
53 -T--C------AGATC-G----GACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCT
* * * * ** * * *
10493297 GGTGCCACATTTTTCTTTGCCGGGGCACCACCGTCGGAGCATCGTCGAAGAATCTGACCGGCGGC
103 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCA-CGTCGGAGAACCTGACCGGAGGC
* *
10493362 ATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGT
167 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
* *
10493426 ACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
232 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
10493491 CATTTGAGATTTTATAGGTTTGCTAG-CAGTAGCCATTAAAGTGTCTGAAATTGGAACACTTTTT
297 CATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
10493555 TCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
361 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * * * * **
10493620 AAATACAAGGATCACATCAACCAAGTTTGGGGCTAAACCTCC-TTC---------CGAAAAAATC
426 AAATACAAGGATCACGTCTACCAAGTTTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATC
* *
10493675 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
491 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
10493740 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
556 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * ****
10493805 ATATGAAGATGTTCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGTAAATCCCGTCTCTC
621 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* ** * * * *
10493870 TAGCCGGTGTCGTGCCCGCGCGCCTGCCCGCCTGCCCGTTCGTTTCCTCGGTTGGCTTCGGCATA
686 TGGCCGACGTAGTG-CC-CAC-CC-G--C-CC-G-CC--TCGTTTCGTCGGTTGGCTTAGGCATA
* * * * ** * * *
10493935 TGGAGTTCAATCCCAGTCT-AGTATCAGATCGGACTAAGGGTTGCGATAGTAGGATCGGTAGCAT
740 CGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * * * **
10493999 GCAGAGGGGCACCCGATCAATCCCCGGCTTGCACATCCCACCCCTCTGGTCGGCTGAGCGCTCGT
804 GCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCAC
10494064 A
868 A
* * * * * * * * *
10494065 TGCTCATTTCATGGGTTGACTTAGGCATATGTAGTTCATTCCCAGTCTAATATCGGATTGGACCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
* * * *
10494130 AGGGTTGCGGCAGCATATGTTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * *
10494195 CCAT---C---G--C--CAGAGAACCTGACC-GACGACATTAGGGTTCC-AGCGATCGGGGGGGC
130 CCATCACCGGAGCACGTCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGA-CGATCGGGGGGGC
* *
10494248 C-GGGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
193 CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
10494312 CCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGG
258 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * *
10494377 TAGTAGCCAATAAAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTAACAAAATCTTGTACACT
323 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
10494442 TCGAGTTTTTAGCTGAATGTTTTTT-TCCATGCCAATAAAAATACAAGGATCACGTATACCAAGT
388 TTGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * ** * * *
10494506 TTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATC
452 TTCGGACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
* *
10494571 GTAAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
517 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
10494636 TGAATTTACAAGCCA-ATAAAATGGCATTGGGACGTAGAAATATGAAGATGTGCCTAAACCCACC
582 TGAATTTACAAGCCATA-AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
10494700 TACCACCCTATCGGTCCACGGCTTGCGCATCCCATCTGC-CTGGCCGACGTAGTGCCCGCCCTCT
646 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCT-CTCTGGCCGACGTAGTG-CC-CAC-C-
* * * * **
10494764 CGCCTGCCCGTTCGTTACGTCGATTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATTGGA
706 CGCCCG-CC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * **
10494829 CCAGAGTGATGGTT------GC----T--GTAGCACACAGAGGGGGACTCGGTCGATCCCTGGCT
768 CCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GGCT
* * *
10494882 TGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCATA
832 TGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCACA
* ** *
10494919 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGATTGGA-CTGGACT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACC
* * ** ** **
10494983 GAAGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCTATTGCCTTATTTTTCTTCGTCGGGGC
65 GAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
10495048 ACCATCACCGGACGTCAC--CGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGG
129 ACCATCACCGGA-G-CACGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGG
* * ** * *
10495111 CCGGGGGGGTGTGCACACACGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCTCCTA
192 CCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
10495176 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
10495241 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
10495306 TTTGACTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
387 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * *
10495371 TT-GGAACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAAT
452 TTCGG-ACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* *
10495435 CGTGAAAAATAGAAAACAAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
516 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
10495500 ATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
10495565 AACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCTCGCCCGCTC
646 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGC-C-CAC-C-C
* * *
10495630 GCCCGCCCGTTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGAC
707 GCCCG-CC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * ** * *
10495695 CAGACCGAGGGTTGCAGCAGCGGGATCGGAAGCACATAGAGGGGGACCCGACCGATCGTCAGCTT
769 CGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCGGCTT
* * * * *
10495760 GCGCATCCCGCCCCTTTGGCCGGTTGA-CTACCCAAA
833 GCGCATCCCTCCCCTCTGGCCGGCTGAGC-GCCCACA
* *
10495796 CGGTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
10495847 CGTACGGAGT
Statistics
Matches: 7855, Mismatches: 723, Indels: 450
0.87 0.08 0.05
Matches are distributed among these distances:
853 3 0.00
854 191 0.02
855 104 0.01
856 1 0.00
857 4 0.00
858 4 0.00
859 3 0.00
860 279 0.04
861 12 0.00
862 1 0.00
863 2 0.00
864 55 0.01
865 527 0.07
866 59 0.01
867 7 0.00
868 11 0.00
869 222 0.03
870 1925 0.25
871 188 0.02
872 1 0.00
873 3 0.00
874 107 0.01
875 45 0.01
876 16 0.00
877 119 0.02
878 1021 0.13
879 1351 0.17
880 50 0.01
881 396 0.05
882 5 0.00
883 10 0.00
884 73 0.01
885 2 0.00
886 1 0.00
887 3 0.00
888 6 0.00
889 4 0.00
890 2 0.00
891 261 0.03
892 39 0.00
893 456 0.06
894 5 0.00
895 42 0.01
896 3 0.00
897 152 0.02
898 5 0.00
900 25 0.00
902 2 0.00
903 3 0.00
905 3 0.00
906 42 0.01
907 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (868 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
CATCACCGGAGCACGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCG
GACCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCTCCC
CTCTGGCCGGCTGAGCGCCCACA
Found at i:10489716 original size:26 final size:26
Alignment explanation
Indices: 10489680--10489729 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10489670 GTTGACTTAG
10489680 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
10489706 GCATACGGAGTTCATTCGCAGTCT
1 GCATACGGAGTTCACTCCCAGTCT
10489730 GGTGCTGGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:10490594 original size:26 final size:26
Alignment explanation
Indices: 10490558--10490607 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10490548 GTTGACTTAG
10490558 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
10490584 GCATACGGAGTTCATTCGCAGTCT
1 GCATACGGAGTTCACTCCCAGTCT
10490608 GGTGCTGGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:10492347 original size:26 final size:26
Alignment explanation
Indices: 10492311--10492363 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10492301 GTTGACTTAG
* *
10492311 GCATATGGAGTTCATTCGAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
10492337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
10492363 G
1 G
10492364 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:10493221 original size:26 final size:26
Alignment explanation
Indices: 10493192--10493244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10493182 GTTGACTTAG
10493192 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
10493218 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10493244 G
1 G
10493245 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10493680 original size:881 final size:877
Alignment explanation
Indices: 10487929--10495998 Score: 7711
Period size: 879 Copynumber: 9.2 Consensus size: 877
10487919 TGACTTAGGA
* * * * * *
10487929 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCCGAGGGTTGGGGCAGCACATGCTAGGCT
1 TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGA-CCGAGGGTTGCGACAGCACATGCTGGGCT
* * * * ** *
10487994 C-GGCCATGTGCTGGTGCTGCATTTTGCTTTGTC-GGGCACCCATCACCGGAGCCA-CGTTGGAG
65 CAGG-CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA-CCATCGTCGGAG-CATC--CGGAG
* * *
10488056 AACCTAACCGGAGGCATTGGGGTTCCGA-GATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATG
125 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATG
* *
10488120 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
188 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
10488185 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAA
253 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
10488250 ATGGAGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * * * *
10488315 TGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCATTCTGAAA
383 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG---
* * ** *
10488380 AAATTTTAAAAAATCCCGAACCACAAAAGGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTC
445 -------AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
10488445 TT-CTCATGAAACTTAACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATG
503 TTGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
10488509 GCATTGGCACGTAGAAATATGGACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTT
567 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
10488574 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGCCCACTCGTTTCGTCGATT
632 GCGCATCCCGTCTCTCTGGCCGACGTAGTG-CT-------CGCCCG----CTCGTTTCGTCGGTT
* * * * * *
10488639 GGCTTAGGCATATGGAGTTCATTGCCAGTCTAAGATTGGACCAGG-CTGAGGGTTGCGACAGCAA
685 GGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CTGGACTGAGGGTTGCGGCAGTAG
** * * * * * * *
10488703 GATCGGTAGCACGC--AGCGGG----G---GATCCCCGGCTTGTGCGTCCCTCCCCTCTAGCCAG
748 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * * *
10488759 CTGAGCGACCGCACGCTCGTTTCATGTGTTGACTTAGGCATACAGAGTTCATTCCC---C--ATC
813 TTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** *
10488819 TA---A--T-A-T--C------AGAT-----CAGATCGAGGGTTACGGTAGCACATGCTGGACTC
1 TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * * ** * **
10488864 GGGCATTTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCATCAAAGCATTGCCGGAGAACC
66 AGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA-T-CCGGAGAACC
*** * *
10488929 TGACCGATAGCATT-GGGATTCCGGCGATCGGAGGGGCCGGGGGGGATGTGCGCACATGATGTGC
129 TGACCGGCGGCATTAGGG-TTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGC
* * *
10488993 AATGGGTACTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAAACTCAC
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCAC
10489057 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10489122 AGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * ** * *
10489187 TGCATACCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGCACCAAACCTGCTTCCGAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-----
* * * *
10489252 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCATCTT
445 -----AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
10489317 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
505 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
10489382 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACG
570 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
10489447 CATCCCATGTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGACCGTTAGTTTCGTCGGTTGGC
635 CATCCCGTCTCTCTGGCCGACGTAGT----G----CTCGCCCG--C--TCGTTTCGTCGGTTGGC
* ** *
10489512 TTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAACTGAACCAAACTGAGGGTTGCGAG-AGT
688 TTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACTG-----GACTGAGGGTTGCG-GCAGT
* ** * * *
10489576 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGTCCCTCTTGCC
746 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
*
10489641 GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
811 GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
10489706 GC
876 GC
* * *
10489708 ATACGGAGTTCATTCGCA--GT---CT-GG---TG--C------TG-G---G--C-T--T--G--
1 -TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * **
10489743 -A-GCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGCACCGTCACCGGAGCATCGTCGGAGAAC
65 CAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CGGAGAAC
* * * ** * *
10489806 CTGACCAGCGGCATTGGGGTTCCGACGATTGAAAGGGTCGGGGGGGTGTGTGCGCACATGATGTG
128 CTGACCGGCGGCATTAGGGTTCCGACGATCG-GGGGGGC-CGGGGG-GTGTGCGCACATGATGTG
* *
10489871 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
10489936 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10490001 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTG-ATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * *
10490065 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCCAAACTCCTTTCAAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTC------
** * ** **
10490130 ATTTTAAAAAATCTCGAACCTTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
443 ---CGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
10490195 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
505 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
10490260 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACG
570 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
10490325 CATCCCATGTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGACCGTTAGTTTCGTCGGTTGGC
635 CATCCCGTCTCTCTGGCCGACGTAGT----G----CTCGCCCG--C--TCGTTTCGTCGGTTGGC
* ** *
10490390 TTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAAACTGAACCAAACTGAGGGTTGCGAG-AGT
688 TTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACTG-----GACTGAGGGTTGCG-GCAGT
* ** * * *
10490454 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGTCCCTCTTGCC
746 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
*
10490519 GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
811 GGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
10490584 GC
876 GC
* * *
10490586 ATACGGAGTTCATTCGCA--GT---CT-GG---TG--C------TG-G---G--C-T--T--G--
1 -TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * **
10490621 -A-GCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGCACCGTCACCGGAGCATCGTCGGAGAAC
65 CAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CGGAGAAC
* * * ** * *
10490684 CTGACCAGCGGCATTGGGGTTCCGACGATTGAAAGGGTCGGGGGGGTGTGTGCGCACATGATGTG
128 CTGACCGGCGGCATTAGGGTTCCGACGATCG-GGGGGGC-CGGGGG-GTGTGCGCACATGATGTG
*
10490749 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
10490814 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10490879 AGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * ** * *
10490944 TGCATACCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGCACCAAACCTGCTTCCGAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-----
* * * *
10491009 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCATCTT
445 -----AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
10491074 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
505 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
10491139 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTACG
570 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
10491204 CATCCCATGTCTTTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGACTGCTAGTTTCGTCGGTTGGC
635 CATCCCGTCTCTCTGGCCGACGTAGT----GCT----CGCCCG-CT-C--GTTTCGTCGGTTGGC
** ***
10491269 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAACCGAACTGAGGGTTGCAAAAGTA
688 TTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACTG----G-ACTGAGGGTTGCGGCAGTA
* * * * * *
10491334 GGATCGGCAGCACGCAGAGGGGGTCCCGACCGATCCCCGGCTTGCGCATCCTGTCCCTCTCGCCG
747 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCG
* *
10491399 GTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTTTAAG
812 GTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
10491464 C
877 C
* * *
10491465 ATACGGAGTTCATTCGCA--GT---CT-GG---TG--C------TG-G---G--C-T--T--G--
1 -TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * **
10491500 -A-GCATGTGCTGGTGCCGCATTTCTCTTCACCGGGGCACCGTCACCGGAGCATCGTCGGAGAAC
65 CAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CGGAGAAC
* * * ** * *
10491563 CTGACCAGCGGCATTGGGGTTCCGACGATTGAAAGGGTCGGGGGGGTGTGTGCGCACATGATGTG
128 CTGACCGGCGGCATTAGGGTTCCGACGATCG-GGGGGGC-CGGGGG-GTGTGCGCACATGATGTG
*
10491628 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
10491693 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
10491758 AGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * ** * *
10491823 TGCATACCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGCACCAAACCTGCTTCCGAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-----
* * * *
10491888 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCATCTT
445 -----AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
10491953 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
505 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
10492018 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATTGATCCACGGCTTGCG
570 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
10492083 CATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCTTGCCCGCTCGTTTCGTCGGTTGGC
635 CATCCCGTCTCTCTGGCCGACGTAGT------------GCTCGCCCGCTCGTTTCGTCGGTTGGC
*
10492148 TTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGA-TCGGA-TCGAGGGTTGCGGCAGCAGGA
688 TTAGGCATACGGAGTTCATTC-CAGTCTAAGATCGGACT-GGACT-GAGGGTTGCGGCAGTAGGA
* * *
10492211 TCGATAGCACGCAGAGGGGGGCCCGACCGATCCCC-GACTTGCGCATCCCGCCCCTTTGGCCGGT
750 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGT
* * **
10492275 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCGAAGTCTAAGC
814 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *** *
10492339 ATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAACAGCACATGCTGGGCT
1 -TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * ** * *
10492404 CAGGCATGTGTTGGTACCGTATTTTTCTTCGTTGAGGCACCATCGT-----CA----GAGAACTT
65 CAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCGGAGAACCT
* * * * *
10492460 GACCGGCGGCATTAGGGTTCTGGCGATCGGGGGGGGCCGGGGGGTGTACGTACATGATTTGCGAT
130 GACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
10492525 GGGTACTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
10492590 CCTTGAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCAATTAAAGTGTTTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
10492655 ACACATTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
10492720 TGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACACCTTCCAAAAAAATTT
389 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA---
* *
10492785 TAAAAAAGCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
451 T-------CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
10492850 TGAAACTTCAAGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCACAAAAAAGGCATTGG
509 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
10492915 CACGCAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCTTATCGATCCATGGCTTACGCATC
574 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
**
10492980 CCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCTCGTTTCGTCGGTTCACTTAGGCATACGGAGTT
639 CCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * *
10493045 CATTCCTAGTCTAAGATTGGACTGGACTGAGGGTTATGGCAGTAGGATCGACAGCACGCAAAAGG
704 CATTCC-AGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGAGGG
* * * * *
10493110 GTACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTGTGACCGGCTGAGCGCCCACACGCTCG-
768 GGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGT
*
10493174 TTCTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
833 TTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
10493220 ATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
1 -TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * * *
10493285 CAGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCACCGTCGGAGCATCGTCGAAGAAT
65 CAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC--CGGAGAAC
* * * *
10493350 CTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGTGA
128 CTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
10493415 TGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
10493480 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTAG-CAGTAGCCATTAAAGTGTCTGAAATTG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
10493544 GAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
10493609 CATGCCAAAAAAAATACAAGGATCACATCAACCAAGTTTGGGGCTAAACCTCCTTCCGAAAAAAT
387 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
10493674 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
452 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
10493739 CACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
517 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * ***
10493804 AATATGAAGATGTTCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGTAAATCCCGTCTCT
582 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * *
10493869 CTAGCCGGTGTCGTGCCCGCGCGCCTGCCCGCCTGCCCGTTCGTTTCCTCGGTTGGCTTCGGCAT
647 CTGGCC---GACGT-------AG--TG--C-TC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** **
10493934 ATGGAGTTCAATCCCAGTCT-AGTATCAGA-TCGGACTAAGGGTTGCGATAGTAGGATCGGTAGC
696 ACGGAGTTC-ATTCCAGTCTAAG-ATCGGACT-GGACTGAGGGTTGCGGCAGTAGGATCGACAGC
* * * * * * * * * *
10493997 ATGCAGAGGGGCACCCGATCAATCCCCGGCTTGCACATCCCACCCCTCTGGTCGGCTGAGCGCTC
758 ACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCC
** * * * * *
10494062 GTATGCTCATTTCATGGGTTGACTTAGGCATATGTAGTTCATTCCCAG--T---C
823 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
10494112 TA---A--T-A-T--C---G---GATTGGACC--A---AGGGTTGCGGCAGCATATGTTGGGCTC
1 TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * *
10494157 GGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCG-C----CA----GAGAACCTG
66 AGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCGGAGAACCTG
* * *
10494213 ACCGACGACATTAGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATTATGTGCGATG
131 ACCGGCGGCATTAGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
10494277 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
** *
10494342 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGTAGTAGCCAATAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
10494407 TATTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTT-TCCA
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT-TTTTTTGTGCA
* * * **
10494471 TGCCAATAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTT
389 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG---------
* * *
10494536 TAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCGTAAAAAATAGAAAAGGAGTCGTCTTGCCA
445 -AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
10494601 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-ATAAAATGGCATTG
509 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTG
* * *
10494665 GGACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCAT
573 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
10494730 CCCATCTGC-CTGGCCGACGTAGTGCCCGCCCTCTCGCCTGCCCGTTCGTTACGTCGATTGGCTT
638 CCCGTCT-CTCTGGCCGACGTAGTGCTCG--C-C-CG-CT---CG-T--TT-CGTCGGTTGGCTT
* * ** * *
10494794 AGGCATACGGTGTTCATTCCCAGTCTAAGATTGGACCAGAGTGATGGTT---GC--T--G-T---
690 AGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGTAGGATCGA
* * ** **
10494848 -AGCACACAGAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
754 CAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
* *
10494912 GCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAG--T---C
819 GCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
10494966 TA---AG---ATT----G-G--A-CT-GGA-CTGA---A-GGTTGTGATAGCACATGCTGGGCTC
1 TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* ** ** * **
10495011 GGGCATGTGCTATTGCCTTATTTTTCTTCGTCGGGGCACCATCACCGGACGTCA-CCGGAGAACC
66 AGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGA-G-CATCCGGAGAACC
* * * *
10495075 TGACCGGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACACGATGTGCAA
129 TGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
10495140 TGGGTACTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
10495205 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
10495270 GACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGATTTTTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* **
10495335 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAACCAAAACTCCTTCCAAAAAAATT
388 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC---------
* ** * *
10495400 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCT
444 -GAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
10495465 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTG
508 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
10495530 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCAT
573 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
10495595 CCCGTCTCTCTGGCCGATGTAGTGCTCGCCCGCTCGCCCGCCCGTTCATTTCGTCAGTTGGCTTA
638 CCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCT--------CG----TTTCGTCGGTTGGCTTA
* ** * * **
10495660 GGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCGGGATCGGA
691 GGCATACGGAGTTCATTC-CAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGTAGGATC-GA
** ** *
10495725 -AGCACATAGAGGGGGACCCGACCGATCGTCAGCTTGCGCATCCCGCCCCTTTGGCCGGTTGA-C
754 CAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGC
* * * *
10495788 TACCCAAACGGTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
819 -GCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
10495848 GTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGAACATGCTGGACT
1 -TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * *
10495913 C-GAGCATGTGCTAGTGTCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACTGGAGAA
65 CAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC-C-GGAGAA
* *
10495977 CCTGACCGGCAGCATTGGGGTT
127 CCTGACCGGCGGCATTAGGGTT
10495999 TGCTGCCAGC
Statistics
Matches: 6272, Mismatches: 611, Indels: 580
0.84 0.08 0.08
Matches are distributed among these distances:
853 1 0.00
854 166 0.03
855 8 0.00
856 2 0.00
857 1 0.00
858 5 0.00
859 4 0.00
860 282 0.04
861 11 0.00
862 3 0.00
863 2 0.00
864 48 0.01
865 507 0.08
866 47 0.01
867 6 0.00
868 9 0.00
869 121 0.02
870 683 0.11
871 64 0.01
872 1 0.00
873 3 0.00
874 148 0.02
875 34 0.01
876 12 0.00
877 107 0.02
878 920 0.15
879 1330 0.21
880 44 0.01
881 465 0.07
882 7 0.00
883 15 0.00
884 83 0.01
885 3 0.00
886 7 0.00
887 10 0.00
888 2 0.00
889 6 0.00
890 4 0.00
891 272 0.04
892 32 0.01
893 443 0.07
894 5 0.00
895 38 0.01
896 7 0.00
897 158 0.03
898 10 0.00
899 5 0.00
900 2 0.00
901 5 0.00
902 5 0.00
903 61 0.01
904 25 0.00
905 1 0.00
906 32 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
TACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC
AGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCGGAGAACCTG
ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTA
AGATCGGACTGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGAT
CCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Done.