Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 62 of 121
Found at i:10495859 original size:26 final size:26
Alignment explanation
Indices: 10495823--10495872 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10495813 GACTTAGGCA
10495823 TACGAAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
*
10495849 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
10495873 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:10498737 original size:26 final size:26
Alignment explanation
Indices: 10498700--10498752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10498690 GTTGACTTAG
*
10498700 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTACCAGTCTAA
*
10498726 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAAAGTTCATTACCAGTCTAA
10498752 G
1 G
10498753 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTACCAGTCTAA
Found at i:10499951 original size:872 final size:867
Alignment explanation
Indices: 10496009--10501260 Score: 6067
Period size: 877 Copynumber: 6.0 Consensus size: 867
10495999 TGCTGCCAGC
* * ** * * *
10496009 AGCAGGATC-AGCAGCACGTAGAGGGGGACCC-AGTCGATCGTCGGCTTGTGCATCCCACCCCTC
1 AGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCTCCTC
* * * * **
10496072 TGGCCTGCTGAGCGCCCGTACGTTCGTTTCGTGCGTTGACTTAGGCATAC-GAGTTCATTCCCCG
64 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAA
* * ** ** * *
10496136 TCTAATATCGGATCAGACCGAGGATTACGATAGCACATACTGGGCTCGAGG-TTGTGCTGGTGCC
129 TCTAAGATCAGATCAGACCGAGGGCTACGGCAGCACATGCTGGGCTCG-GGCATGTGCTGGTGCC
* * * *
10496200 GTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGCCGGAGAACCTGACCGGCGGCATTGGG
193 GCATTTTTCTTCACCGGGGCACCATCGTCGGAGCA-T-ACGGAGAACCTGACAGGCGGCATTGGG
* * * *
10496265 ATTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGG
256 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGG
* * * *
10496329 CCCTTATATTGGCCCTCTATCCATCATCAAAACTCAAGAACTCAC-CCCCCTTAAAGAGCATTTG
321 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
10496393 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
386 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
10496458 GTCACAAAATCTTGCACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAATAAAAATACA
451 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
10496522 AGGATCACGTCTACCAAGTTTAGGGCCCAAACTCCTTTCGAAAAAATTTT-AAAAACTCCCGAAC
516 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAAC-CCC-AAA
*
10496586 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
578 CG-----AGTTTAGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
10496651 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
638 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
10496716 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTGTCTCTGGCCG
703 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCG
*
10496781 GCGTAGTGCCCG-CCC-GCCCGCACGACCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
768 GCGTAGTGCCCGCCCCTG-CC-CAC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * *
10496844 ATTCCCAGTCTAAGATCAAACTGAACCAAACTGAGGGTTGCGAG
829 ATTCCCAGTCTAAGATC--A--G-ACCAGACCGAGGGTTGCGAT
* * * *
10496888 AGTAGGATC-AGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTG-TCCCTC
1 AGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCT-CCTC
* ** * * *
10496951 TCGCCGATTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA-T-----
64 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAA
* *
10497010 T-T--G-T-AG-T-----------CT---G--G----TGCTGGGCTTGTGCATGTGCTGGTGCCG
129 TCTAAGATCAGATCAGACCGAGGGCTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * ** * *
10497049 CATTTCTCTTCACCGGGGCACCGTCACCGGAGCATCGTCGGAGAACCTGACCA-ACGGCATTGGG
194 CATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT--ACGGAGAACCTGA-CAGGCGGCATTGGG
** * ** * * * *
10497113 GTTCCGGTGATTGAAAGGGTCGGGGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
256 GTTCCGACGATCG-GGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATTGGTGCTGGTACTT
*
10497178 GGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCAT
319 GGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
10497243 TTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTGTCAA
383 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
10497308 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAAAAC
448 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * * * *
10497373 ACAAGGATCATGCCTACCAAGTTTAGGGTCAGAACTCCTTCCAAAAAAATTTAAAAAAATCTTGA
513 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAATTTTAAAAAA-C----
* * *
10497438 ACCGTAAA-AAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
572 -CC-CAAACGAGTTTAGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * ***
10497502 TGAAGGCTTAAAGGACCATTGTTTGAATTTATAAGCCATAAAAATGGCATTGGCACATAGAAATA
635 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
10497567 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACCCATCCCGTTTCTTTGG
700 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGG
* *
10497632 CCGGCGTAGTGCCCGCCCCACCGCCCACCCGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTT
765 CCGGCGTAGTGCCCG-CCC-CTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
10497697 CATTCTCAGTCTAAGATCTGATCAAATCGAGGGATGCGAT
828 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAT
** * * * *
10497737 AGCAGGATCGGTAGCACACAGAGGTGGACCTGACCGATCCCCGGCTTGCGCATCCCG-TACTTCT
1 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCT-CCTCT
* * * *
10497801 GGCCGGTTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
65 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAAT
* * * * * **
10497866 CTAAGATCGGACCAGACCGAGGGCTACGGTACCACATGCTAGGG-TCGGGCATGTGCTGGGGCTA
130 CTAAGATCAGATCAGACCGAGGGCTACGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCG
* ** * *
10497930 TATTTTTCTTCGTCGGGGCACCATCGTC---G---A---AGAACCTGACTGGTGGCATTGGGGTT
194 CATTTTTCTTCACCGGGGCACCATCGTCGGAGCATACGGAGAACCTGACAGGCGGCATTGGGGTT
* * * **
10497986 CC-AGTGATCGGGGGGGTCGAAAGGGGGTGTGCGTTCATGATGTGCGATTGGTGCTGGTACTTGG
259 CCGA-CGATCGGGGGGGCCG--GGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGG
*
10498050 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
321 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
10498115 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
386 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
10498180 GTCACAAAATCTTGTACACTTTGTGTTTTTCGTTGAATTTTTTTGTGCATGCCAACAAAAATACA
451 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
10498245 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAATTTTAAAAAACCCCAAACCG
516 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAACCCCAAA-CG
* *
10498310 TAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
580 -----AGTTT-AGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
10498374 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCATTGGCATGCAGAAATATGAA
639 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
10498439 GATGTGCCTAAACCCACCTACCACCCTATCCAACCATGGCTTGCGCATCCCGTGTCTCTCGCCGG
704 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
10498504 CGTAGT----G--CCTG----CCCGCTCATTTCGTCGGTTGACTTAGGCATATGAAGTTCATT-C
769 CGTAGTGCCCGCCCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * *
10498558 CAGTCTAAGATTGGATCGGACCGAGCGTTGTGAC
834 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGAT
* *** **
10498592 AGCAGGATCGATAGCATAAAGAAGGGGGACCCGACCGATCCTGGGCTTGCGCATCCCGC-CGCTC
1 AGCAGGATCGACAGCACGCAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCTC-CTC
* * *
10498656 TGGTCGGCTGAGCGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAG
64 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CC--
* **
10498721 TCTAAGCATACAGAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGCTGTGGCAGCACATG
126 -C--A--AT-C-----T-A--A-GA-TC--AGATC--A---GACCGAGGGCTACGGCAGCACATG
* * * *
10498786 CTGGGCTCGGGTATGTGTTGGTGTCGTATTTTTCTTCACCGGGGCACCA---TC---G--T-CGG
168 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATACGG
* ** * *
10498842 AGAACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGAGGGGGTGTGCGTACATG
233 AGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-G-GGGGGTGTGCGCACATG
*
10498907 TTGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
296 ATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
10498972 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAACCATTAAAGTGTCT
361 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
10499037 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTT
426 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
** *
10499102 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAATAGGTTTGGGGCCAAAACTCCTTCCG
491 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
10499167 AAAAATTTTAAAAAACCCCAAACGAGTCATAGAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
556 AAAAATTTTAAAAAACCCCAAACGAGT-TTAGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
10499232 CCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
620 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
10499297 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCAACCACGGCTTGCGT
685 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
* * * * *
10499362 ATCCCGTCTCTCTCGTCGGTGTAGTGCCCGCCCACCTGTCCACCCGCTCGTTTCGTCAGTTGGCT
750 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCTGCCCACCCGCTCGTTTCGTCGGTTGGCT
* * *
10499427 TAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCCG-T
813 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGAT
* * * * *
10499482 AGCAGGATCGGCAGCACGCAGAGGGGGGCCCGGCCGATCCCGGGCTTACGCATCCCGCTCCTCTG
1 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCTCCTCTG
* * * * * * *
10499547 GTCGGCTGAGTGCTCGTACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
66 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATC
*
10499612 TAAGATCAGATCAGACCGAGGGCTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
131 TAAGATCAGATCAGACCGAGGGCTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* *
10499677 TTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAGGCGACATTAGGGTT
196 TTTTTCTTCACCGGGGCACCATCGTCGGAGCAT-A-CGGAGAACCTGACAGGCGGCATTGGGGTT
* * *
10499742 CCGACGATCGAGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATTGGTACTGGTACTTGGCCC
259 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCC
*
10499807 TTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
324 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
10499872 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTC
389 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
10499937 ACAAAATATTGTACACTTTGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
454 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** *
10500002 ATCACATCTACCAAGTTT-GGGCCAAAACTCCTTTTGAAAAAATTTTAAAATATCCCGAACAGCA
519 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAA-AACCC---CA--A
**
10500066 AAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
577 ACGAGTTT-AGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** ***
10500130 CTTAAGGGACCATTGTATGAATTTACAATTCATAAAAATGGCATTGGCACATAGAAATATGAAGA
641 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
10500195 TGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCG
706 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
** * * * *
10500260 TAGTGCCCGCTCGCCTGCCCGTCCGCTCATCTCGTTGGCTGGCTTAGGCATACGGAGTTCATTCC
771 TAGTGCCCGC-C-CCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
10500325 CAGTCTAAGATCAGACC-GAATCGAGGGTTGCGAC
834 CAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGAT
* * * * * *
10500359 AACAGGATCGACAGCAAGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCGCCTCTG
1 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCTCCTCTG
* * * * *
10500424 GCCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCCAGTC
66 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATC
* ** * * * *
10500489 CAAGATCAGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCACGTGCTGGTGTCGCA
131 TAAGATCAGATCAGACCGAGGGCTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
10500554 TATTTCTTCATCGGGGCACCA---TC---GC-T--GGAGAACCTAACCGGCGGCATTAGGGTTCC
196 TTTTTCTTCACCGGGGCACCATCGTCGGAGCATACGGAGAACCTGACAGGCGGCATTGGGGTT-C
* * * *
10500610 CG-CGATCGGGGGGGTC-GGGGGGTGTGCACACATGATGTGCGATGGGTGGTGGTACTTGGCCC-
260 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCT
* *
10500672 TATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
325 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
10500737 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCGAATGGTCA
390 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
10500802 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACATGAA
455 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * * * *
10500867 TCACGTCTACCAAGTTTGGGGCCACAACTCATTCTGAAAAAATTGTAAAAAATCTCGAACCGTGA
520 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAA-CCCCAAAC--G-
* *
10500932 AAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGC
580 --AGTTT-AGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
10500996 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATTTGAAGAT
642 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
10501061 ATACCTAATCCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
707 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
10501126 AGTGCCCG-CCC-GCCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
772 AGTGCCCGCCCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* **
10501189 TCTAAGATCAGACCAGACTGAGGGTTATGAT
837 TCTAAGATCAGACCAGACCGAGGGTTGCGAT
* *
10501220 AGCAGTATCGACAGCACGCAGAGGGGGACCCGACCAATCCC
1 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCC
10501261 TGACTTGCTC
Statistics
Matches: 3788, Mismatches: 431, Indels: 326
0.83 0.09 0.07
Matches are distributed among these distances:
847 2 0.00
848 81 0.02
849 124 0.03
850 7 0.00
851 48 0.01
852 30 0.01
853 115 0.03
854 312 0.08
855 50 0.01
856 132 0.03
857 6 0.00
858 2 0.00
859 1 0.00
860 9 0.00
861 111 0.03
862 7 0.00
863 69 0.02
864 202 0.05
865 257 0.07
866 39 0.01
867 4 0.00
868 197 0.05
869 212 0.06
870 79 0.02
871 25 0.01
872 259 0.07
873 7 0.00
874 45 0.01
875 4 0.00
876 10 0.00
877 617 0.16
878 7 0.00
879 95 0.03
880 9 0.00
881 49 0.01
882 384 0.10
883 1 0.00
885 5 0.00
888 2 0.00
889 128 0.03
890 44 0.01
891 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (867 bp):
AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCTCCTCTG
GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATC
TAAGATCAGATCAGACCGAGGGCTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCACCGGGGCACCATCGTCGGAGCATACGGAGAACCTGACAGGCGGCATTGGGGTTCC
GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAACCCCAAACGAGTTTA
GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
CCCTGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCGAGGGTTGCGAT
Found at i:10501791 original size:139 final size:139
Alignment explanation
Indices: 10501541--10501793 Score: 366
Period size: 139 Copynumber: 1.8 Consensus size: 139
10501531 TCGCCCGTCT
* *
10501541 GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAA
1 GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAA
*
10501606 CTGAGGGTTGCGGTAAGAAGATCGACAGCACGTAGAGGGGGACCCGACCGATGCCTGACTTACGC
66 CTGAGGGTTACGGTAAGAAGATCGACAGCACGTAGAGGGGGACCCGACCGATGCCTGACTTACGC
10501671 ATCCCGCCC
131 ATCCCGCCC
* * * *
10501680 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGATCGAA
1 GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAA
* * ** *
10501745 -TCGAGGGTTACGG-CAGCAGGATCGGTAGCATGTAGAGGGGGACCCGACC
66 CT-GAGGGTTACGGTAAG-AAGATCGACAGCACGTAGAGGGGGACCCGACC
10501794 AATCCCCGGC
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
138 3 0.03
139 97 0.97
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (139 bp):
GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAA
CTGAGGGTTACGGTAAGAAGATCGACAGCACGTAGAGGGGGACCCGACCGATGCCTGACTTACGC
ATCCCGCCC
Found at i:10502621 original size:68 final size:68
Alignment explanation
Indices: 10502511--10502645 Score: 198
Period size: 68 Copynumber: 2.0 Consensus size: 68
10502501 CTAAACCCAC
* * * * *
10502511 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCACTCTGGCCGGTGTAGTACCCGCCCGCC
1 CTACCACCCTATCAATCCACGGCTTGCACATCCCGTCACTCTGGCCAGCGTAGTACCCGCCCGCC
10502576 CGT
66 CGT
* * *
10502579 CTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCC
1 CTACCACCCTATCAATCCACGGCTTGCACATCCCGTCACTCTGGCCAGCGTAGTACCCGCCCGCC
10502644 CG
66 CG
10502646 CCCGCTCGTT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 59 1.00
ACGTcount: A:0.14, C:0.44, G:0.21, T:0.21
Consensus pattern (68 bp):
CTACCACCCTATCAATCCACGGCTTGCACATCCCGTCACTCTGGCCAGCGTAGTACCCGCCCGCC
CGT
Found at i:10502863 original size:26 final size:26
Alignment explanation
Indices: 10502833--10502884 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10502823 TGACTAAGGC
10502833 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
* *
10502859 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
10502885 TCAGACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:10505929 original size:26 final size:26
Alignment explanation
Indices: 10505899--10505951 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10505889 GTTGACTTAG
*
10505899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
10505925 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10505951 G
1 G
10505952 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10506605 original size:26 final size:26
Alignment explanation
Indices: 10506569--10506621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10506559 GTTGACTTAG
*
10506569 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10506595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10506621 G
1 G
10506622 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10513185 original size:26 final size:26
Alignment explanation
Indices: 10513149--10513199 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10513139 TGACTTAGGT
10513149 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
*
10513175 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
10513200 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:10514085 original size:26 final size:26
Alignment explanation
Indices: 10514049--10514101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10514039 GTTGACTTAG
10514049 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
10514075 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10514101 G
1 G
10514102 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10514972 original size:26 final size:26
Alignment explanation
Indices: 10514942--10514994 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10514932 GTTGACTTAG
10514942 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
10514968 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10514994 G
1 G
10514995 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10515585 original size:891 final size:891
Alignment explanation
Indices: 10513079--10516953 Score: 5396
Period size: 891 Copynumber: 4.3 Consensus size: 891
10513069 GCCCGTGACA
* * * * * *
10513079 CCCGGCTTGCGCGTCCCACCCCTCTGGCCGGCTGAGCGACC-GCATGCTCATTTCGTGGGTTGAC
1 CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAAC-ACCTGCACGCTCATTTCATGGGTTGAC
* * *
10513143 TTAGGTATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
65 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
* * * ** * * * *
10513208 AGACCGAGGGTTACGACAGCACATGCTGGGCTCGACCATGTGCTGGTGTCGTATTTTTCTCCTTC
130 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
10513273 GGGGCACCATCATCGGAGCATCGTTGGAGAACCTGACCGGCCGCATTGGGGTTCCGACAATCGGG
195 GGGG---CAGCATC---GC--C---GGAGAACCTGACCGACGGCATTGTGGTTCCGACGATCGGG
10513338 GGGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
249 GGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
10513403 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
313 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
10513468 CTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
378 CTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
10513533 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
443 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
10513598 ATTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAA
508 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAA
* *
10513663 ATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
573 ATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
10513728 GTATGAATTCA-AAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCA
638 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
10513792 CCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCAACGTAGTGCCCGCCTGC
703 CCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
10513857 CCGTCCGTCCGCTGGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAG
768 CCGTCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* * * *
10513922 ACCGGATCGGGGGTTACGGTAGCAGGATCGGCAACACATAGAAGGGGACCTGATCGATC
833 ACCGGATCGAGGGTTACGGCAGCAGGATCGGCAACACACAGAAGGGGACCTGACCGATC
** * **
10513981 CCCGACTTGCGCATCCCGCCCCAT-TGGCCGATTGAACACCCGCACGCTCATTTTGTGGGTTGAC
1 CCCGACTTGCGCATCCCGCCCC-TCTGGCCGGCTGAACACCTGCACGCTCATTTCATGGGTTGAC
10514045 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
65 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
* *
10514110 GGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
130 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
*
10514175 GGGGCAGCATCGTCGGAGAACCTGACCGACGGCATTGTGGTTCCGACGATCGGGGGGCCGGGGGG
195 GGGGCAGCATCGCCGGAGAACCTGACCGACGGCATTGTGGTTCCGACGATCGGGGGGCC--GGGG
* *
10514240 GGTGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
258 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
10514305 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAG
323 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
10514370 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
388 CCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
10514435 TTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
453 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
10514500 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
518 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
10514565 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
583 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
10514630 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCC
648 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
10514695 TATCGATCCACGGCTTGCGCAACCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCGCCC
713 TATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGTCC
* *
10514760 GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGATCGA
778 GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA
* * ** *
10514825 GGGTTGCGGTAGCAGGATCGGCAACACGTAGAGGGGGACCTGACCGATC
843 GGGTTACGGCAGCAGGATCGGCAACACACAGAAGGGGACCTGACCGATC
* *
10514874 CCCGACTTACGCATCCCGCCCCTCTGGCCGGTTGAACACCTGCACGCTCATTTCATGGGTTGACT
1 CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACACCTGCACGCTCATTTCATGGGTTGACT
* *
10514939 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCG
66 TAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCG
* *
10515004 GACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCG
131 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
*
10515069 GGGCAGCATCGCCGGAGAACCTGACCGACGGCATTGTGGTTCCGACGATTGGGGGGCCGGGGGGT
196 GGGCAGCATCGCCGGAGAACCTGACCGACGGCATTGTGGTTCCGACGATCGGGGGGCCGGGGGGT
* * * *
10515134 GTACGCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCTCAATCCCTCATCA
261 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
10515199 AACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
326 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
10515264 TTAAAGTTTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTT
391 TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * ** * * *
10515329 TAGATGAATGTTTTTACGCATTCCAACAAAAATATAGGGATCACGTCTACCAAGTTTGGGGCCAA
456 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
10515394 AACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATA
521 AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * *
10515459 GAAAACGAGTCGTCTTGCCATGAGACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACA
586 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
10515524 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
651 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** *
10515589 TGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTACCCACCCGCTCACG--CG
716 CGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-TC-CGTCCG
* * * * * * *
10515652 GTTGTTTCGTCTGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-TGAATCGAATTGA
779 CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGA
* * * * * *
10515716 GGGTTACGGCAGCAGGATAGGTAACACGCAGAAAGAGACCCGACCGATC
843 GGGTTACGGCAGCAGGATCGGCAACACACAGAAGGGGACCTGACCGATC
** * * * *
10515765 CCC-AGCTTGCGTGTCCCGCCCCTCTGGCCGGCTGAGCTCCTGCACGCTCGTTTCATTGGTTGAC
1 CCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAACACCTGCACGCTCATTTCATGGGTTGAC
* * * *
10515829 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGA-C
65 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
* * *
10515893 TGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTCCTTCGT
130 -GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * * * * * ** **
10515958 CGGGGGCACCATCGCCAGAGCATC-GTCGGA--GAACT-T-G-ACCGACGACATTAGGGTTCC--
194 C-GGGGCAGCATCGCCGGAGAACCTGACCGACGGCATTGTGGTTCCGACG--ATCGGGGGGCCGG
* * * *
10516015 -GGCTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCT
256 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
10516079 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
321 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
10516144 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGA
386 AGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
** * **
10516209 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTGTCTCCCAAGTTTTAG
451 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * * *
10516274 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATATTGAACCATAAAAAGTTTTAAAAATCGTGA
516 GCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
10516339 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTAAA
580 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
10516404 TTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATAGGAAGATGTGCCTAAACCCACCTACCA
645 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
10516469 CCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGACTGGCATAGAGCCCGCCCTTCCGCCCG
710 CCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCCCG
* * * *
10516534 CCCGTCTGCTCGTTTCATCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATTAGAC
771 TCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGAC
* * * * * **
10516598 CAGA-CAGAGGGTTATGGCAGCAGGATCGGTAGCACACAGAGGGGGACCTGGTCGATC
835 CGGATC-GAGGGTTACGGCAGCAGGATCGGCAACACACAGAAGGGGACCTGACCGATC
** * * * * *
10516655 CCCGGTTTGTGCATCACGCCCCTCTGGCCGGCTGAACGCCTGCACACTCGTTTCATGGGTTGACT
1 CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACACCTGCACGCTCATTTCATGGGTTGACT
* * * *
10516720 TAGGCATACTGAGTTCATTCCCAATCTAAGCATATGAAGTTCATTCCTAGTCTAAGATCAGATCG
66 TAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCG
* * * * *
10516785 GACTGAGGGTTGCGGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTC-ACT
131 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-
* * * * * *
10516849 GGGCTACCATCACTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACAATCGGG
195 GGG-----------GCAGCATCGCCGGAGAACCTGACCGACGGCATTGTGGTTCCGACGATCGGG
*
10516914 GGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
249 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
10516954 CCAGTAGCCA
Statistics
Matches: 2660, Mismatches: 267, Indels: 87
0.88 0.09 0.03
Matches are distributed among these distances:
885 257 0.10
886 204 0.08
887 1 0.00
888 12 0.00
889 9 0.00
890 267 0.10
891 799 0.30
892 402 0.15
893 468 0.18
894 1 0.00
896 1 0.00
899 6 0.00
900 13 0.00
901 6 0.00
902 170 0.06
903 4 0.00
904 6 0.00
905 1 0.00
906 4 0.00
907 29 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACACCTGCACGCTCATTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCG
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCAGCATCGCCGGAGAACCTGACCGACGGCATTGTGGTTCCGACGATCGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGTCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
TTACGGCAGCAGGATCGGCAACACACAGAAGGGGACCTGACCGATC
Found at i:10515864 original size:26 final size:26
Alignment explanation
Indices: 10515833--10515885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10515823 GTTGACTTAG
*
10515833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
10515859 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
10515885 G
1 G
10515886 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:10516753 original size:26 final size:26
Alignment explanation
Indices: 10516723--10516775 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10516713 GTTGACTTAG
10516723 GCATACTG-AGTTCATTCCCAATCTAA
1 GCATA-TGAAGTTCATTCCCAATCTAA
* *
10516749 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
10516775 G
1 G
10516776 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAATCTAA
Found at i:10517557 original size:26 final size:26
Alignment explanation
Indices: 10517527--10517605 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
10517517 GTTAACTTAG
*
10517527 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10517553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10517579 GAATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10517605 G
1 G
10517606 ATCGAACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10518469 original size:26 final size:26
Alignment explanation
Indices: 10518439--10518517 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
10518429 GTTAACTTAG
*
10518439 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10518465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10518491 GAATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10518517 G
1 G
10518518 ATCGAACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10520249 original size:26 final size:25
Alignment explanation
Indices: 10520214--10520262 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
10520204 GTTGACTTAG
10520214 GCATAGGAGTTCATTCCCAGTCTAA
1 GCATAGGAGTTCATTCCCAGTCTAA
10520239 GCATACGGAGTTCATTCCCAGTCT
1 GCATA-GGAGTTCATTCCCAGTCT
10520263 GAGATCAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAGTCTAA
Found at i:10520719 original size:27 final size:26
Alignment explanation
Indices: 10520681--10520731 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
10520671 GCTGACTTAG
*
10520681 GCATACGGAGTTCATTTCCCAGTCTAA
1 GCATACAGAGTTCA-TTCCCAGTCTAA
10520708 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
10520732 GAGATCGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10521097 original size:459 final size:460
Alignment explanation
Indices: 10520201--10521130 Score: 1340
Period size: 459 Copynumber: 2.0 Consensus size: 460
10520191 GCTCGTTTTG
* *
10520201 TGGGTTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAG
1 TGGGCTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTGAG
*
10520266 ATCAGATCGGACCGAGGGTTACGGCAGCACACGCTGGGCTCGAGCATGTGCTGGTGCCACATTTT
66 ATCAGATCGGACCCAGGGTTACGGCAGCACACGCTGGGCTCGAGCATGTGCTGGTGCCACATTTT
* * * *
10520331 TCTTTGTCGAGGCACCATCACCGGAGCATCGCCAGGGAACCTGACCGACGGCATTGGGGTTCCGA
131 TCTTCGTCGAGG-ACCATCACC-G-G-ATCG-C-GAGAACCTGACCGACGACATTAGGGTTCCGA
* * * * ** *
10520396 TGATCGGGTGGCTAAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTAT
190 CGATCGAGTGGCT-AAGGGGGTGTGCCCACATGATGTGCGATCGGTGCTGGTGCTCAGCCCGTAT
* * *
10520461 ATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTA
254 ATTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTA
* *
10520526 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
319 CAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
10520591 ATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACAAGGGTCAC
384 ATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACAAGGATCAC
*
10520656 GTCTACCAAGTC
449 ATCTACCAAGTC
10520668 TGGGCTGACTTAGGCATACGGAGTTCATTTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTG
1 TGGGCTGACTTAGGCATA-GGAGTTCA-TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTG
* * **
10520733 AGATC-GAATCGGACCCAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTAT
64 AGATCAG-ATCGGACCCAGGGTTACGGCAGCACACGCTGGGCTCGAGCATGTGCTGGTGCCACAT
** * * *
10520797 TTTTCTTCGTCG-GG-GTATCATC-G-TCG-GAGAACCTGACCGACGATATTAGGGTTCTGACGA
128 TTTTCTTCGTCGAGGACCATCACCGGATCGCGAGAACCTGACCGACGACATTAGGGTTCCGACGA
10520857 TCAAGAG-GGCT-AGGGGGTGTGCCCACATGATGTGCGATCGGTGCTGGTGCTCAGCCCGTATAT
193 TC--GAGTGGCTAAGGGGGTGTGCCCACATGATGTGCGATCGGTGCTGGTGCTCAGCCCGTATAT
*
10520920 TGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTA
256 TGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACA-CCCC-TTAAAAAGCATTTGAGATTTTA
*
10520985 CAGGTTTACTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
319 CAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
10521050 ATCTTGTACA-TTTCGAGTTTTTAGCTGATTGTTTTTTA-GCATGCCAACAAAAATACAAGGATC
384 ATCTTGTACACTTT-GAGTTGTTAGCTGAAT-TTTTTTACGCATGCCAACAAAAATACAAGGATC
10521113 ACATCTACCAAGTC
447 ACATCTACCAAGTC
10521127 TGGG
1 TGGG
10521131 GCCAAAACTC
Statistics
Matches: 420, Mismatches: 34, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
457 81 0.19
458 37 0.09
459 152 0.36
460 9 0.02
461 3 0.01
463 1 0.00
466 5 0.01
467 17 0.04
468 11 0.03
469 104 0.25
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (460 bp):
TGGGCTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTGAG
ATCAGATCGGACCCAGGGTTACGGCAGCACACGCTGGGCTCGAGCATGTGCTGGTGCCACATTTT
TCTTCGTCGAGGACCATCACCGGATCGCGAGAACCTGACCGACGACATTAGGGTTCCGACGATCG
AGTGGCTAAGGGGGTGTGCCCACATGATGTGCGATCGGTGCTGGTGCTCAGCCCGTATATTGGCC
CCCTATCCCTCATCAAAACTCAAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
ACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTTGAGTTGTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACAAGGATCACATCTACC
AAGTC
Found at i:10521607 original size:26 final size:26
Alignment explanation
Indices: 10521571--10521621 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10521561 GTTGACTTAG
10521571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
10521597 GCATACGGAGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
10521622 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10523208 original size:899 final size:896
Alignment explanation
Indices: 10520668--10525621 Score: 5053
Period size: 898 Copynumber: 5.5 Consensus size: 896
10520658 CTACCAAGTC
* * *
10520668 TGGGCTGACTTAGGCATACGGAGTTCATTTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTG
1 TGGGTTGACTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
10520733 AGATC-GAATCGGACCCAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTAT
65 AGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAT
* * * ** *
10520797 TTTTCTTCGTCGGG-------GT---ATCATCGTCGGAGAACCTGACCGACGATATTAGGGTTCT
129 TTTTCTTCATCGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCT
* * * ** * * ** *
10520852 GACGATCAAGAGGGCTAGGGGGTGTGCCCACATGATGTGCGATCGGTGCTGGTGCTCAGCCCGTA
194 GATGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTA
* *
10520917 TATTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATT
259 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATT
* * *
10520982 TTACAGGTTTACTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* *
10521047 AAAATCTTGTACATTTCGAGTTTTTAGCTGATTGTTTTTTA-GCATGCCAACAAAAATACAAGGA
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTATGCATGCCAACAAAAATACAAGGA
* * * * * * *
10521111 TCACATCTACCAAGTCTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCTCAAACCGTAA
452 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAA
*
10521176 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACACGAAGGCT
517 AAAGTTTCAAAAATCATGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCT
* * *
10521241 TAAGAGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGTAGAAATAGGAAGATG
581 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
* * * * *
10521306 TGCCTAAACCCACTTACCACCCTATCAATCCACGGCTTGCGCATCCCGCCTCTCCGACCGGCATA
646 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* ** * * * *
10521371 CTGCCCGCTTGCCTGCCCACTCGTTTCGTCTGTTGGCTTAGGTATACGGAGTTCATTCTCAGTCT
711 GTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * *
10521436 AAGATCAAACCGAACTGAGGGTTGCAGTAGTAGGATCGGCA--ACATGCAGAGAGGGACCCGATC
776 AAGATCTGACCGGACTGAGGGTTGCGGCAGCAAGATCGGCAGCACAT--AGAGAGGGACCCGGTC
* * * * * *
10521499 GATCCCCGGCTTGTGCAACCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
839 GAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCA
* *
10521558 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
10521623 GATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCAAGCATGTGTTGGTGCCGTATTT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* * ** * * * *
10521688 TTCTTTGA-CGAGGCACTATCACCGGAGTATCATTGGAGAACCTGATCGGCGGCATTGGGGTT-T
131 TTC-TTCATCG-GGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCT
* * * * *
10521751 CAAGGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTTCTGGTGCTT-GCCCTT
194 -GATGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTT
* ** **
10521814 CTATTGGCCCCCTATCCCTCATCAAACCTTTAGAACTCACACCCCCTTAAAGAGTTTTTGAGATT
258 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
10521879 TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* *
10521944 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGAT
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGAT
** * *
10522009 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAATCATTTTAAAAAAATCTCGAACCGTAA
453 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATCCCGAACCATAA
* * *
10522074 AAAGTTTCAAAAATGATGAAAAATAAAAAACGAGTCGTGTTGCGATGAAACTTCACACGAAGGCT
517 AAAGTTTCAAAAATCATGAAAAAT-AAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCT
* * * *
10522139 TAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATTAAGATT
581 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
* **
10522204 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGCCTCTCTGATCGGCGTA
646 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * *
10522269 GTGCCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTGGGCATATGGAGTTCATTCCCAGTCT
711 GTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
10522334 AAGATCTGACCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGGCCGA
776 AAGATCTGACCGGACTGAGGGTTGCGGCAGCAAGATCGGCAGCACATAGAGAGGGACCCGGTCGA
* * * *
10522399 TCTCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCA
841 TC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCA
* * * *
10522456 TGGGTTGACTTGGGCCTATGGAGTGCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
10522521 GATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTCCTGGTGCCGCATTT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
*
10522586 TTCTTCATCGGGACACCATCGTCGGAGCATCATCGAAGAACCTGACCGACGGCATTGGGGTTCTG
131 TTCTTCATCGGG-CACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCTG
* * *
10522651 ATGATC-GGGGGGTCGAAGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTA
195 ATGATCAGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTA
* * *
10522715 TATTGGCCCCTTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGTGATTT
259 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
10522780 TACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACA
324 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
10522845 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCAAAAAAAAATACAAGGATC
389 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* * *
10522910 ACGTCTACCAAATTTGGGGGCCAAAACTCCTTCCAAAAAAATTTTACAAAATCCCGAACCACAAA
454 ACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAA
10522975 AAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTA
518 AAGTTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTA
10523040 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
583 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
* * *
10523105 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGAATCCCGCCTCTCTGGTCGGCGTAGT
648 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * * *
10523170 GCCTGCCCACCCGCCCACTCATTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAA
713 GCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
10523235 GAT-TGAATCGGACCGATGGTTGAAGCAGCAAGATCGACAGCATGCA-A-AGAGGGACCCGGTCG
778 GATCTG-ACCGGACTGAGGGTTGCGGCAGCAAGATCGGCAGCA--CATAGAGAGGGACCCGGTCG
* * *
10523297 ATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCA
840 AT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCA
*
10523355 TAGGTTGAC-T-----TA--G-G--CA-T---A--C---G-----GG-GTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
10523394 GATCAGACTGGACCGAGGGTTCCGGTAGCACATGCTGTGCTCGGGCATGTGCTGGTGCCGTATTT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* * * * * *
10523459 TTTTTCACCGAGGCACCATCGTTGGAGCATCATCGGAG-AGCTTACCGACGGCATTGGGGTTTTG
131 TTCTTCATCG-GGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCTG
* *
10523523 GTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTGCTTGGCCCTTAT
195 ATGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTAT
*
10523588 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
260 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
10523653 ACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
325 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
10523718 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCA
390 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCA
* * * ** * ** * **
10523783 CGTCTACCAAGTTTGGGGCAAAAAGTCCTTCCGAATTTACCATTGTATGAATTTAC-AAGCCATA
455 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA--AAAAATTTTAAAAAATCCCGAA-CCATA
** **** ** ** ** *
10523847 AAAA-TGGC-ATTGGCATGCAAAAATATGAA-GATGTTTTCTAAACCCACCT-ACCACCCTATCG
516 AAAAGTTTCAAAAATCATG-AAAAATAAAAACGA-GTCGTCT--TGCCA--TGA--A-ACT-TC-
*** ** ** **** ** * *****
10523908 ATCCACGGCTTGCGTATCCCGCCTCTCTGG-CCAGCGTAGTGCAAGCCCGCCCGTCCGTTCGTTT
570 A--CAC-GAAGGC-T-T-AAG-------GGACCATTGTA-TG-AA-TTTACAAG-CCATAAAAAT
* * * ** * * * * * ***
10523972 CGTCGGTTGG--CTTAGGTA-ATGGAGTTCAT-TCCCAGTCTAAGATCGAACTAGACCGAGGGT-
618 -GGC-ATTGGCACGTAGAAATATGAAG---ATGT----GCCTAA-ACCCACCT--ACC-ACCCTA
* ** * * * * * * * **
10524032 TACGA--CAGTAGGCAGAGGGGGA-CCCGACCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCC
670 T-CGATCCA--CGGC--TTGCGCATCCCG-CC--TCTCTGGC-CG-GCGTAGTG--CC-C--GCC
* * * * * *
10524094 GGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
720 -------CGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
10524159 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGACA
778 G-AT-C-----TGA----C---C---G----GA-C---T-GAGGGTTGCGGCAGCAAGATCGGCA
* * * *
10524224 G--CATGCGAAGAGGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGC
817 GCACAT-AG-AGAGGGACCCGGTCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
*
10524287 GCCCGCACGTTCGTTTCA
879 GCCCGCACGCTCGTTTCA
* *
10524305 TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
10524370 GATCAGACCAGACCAAGGGTTGCGACAGCACATGCTAGGCTC-AGGCATGTGCTGGTGCCGCATT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATT
* *
10524434 TTTCTTTC-TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
130 TTTC-TTCATC-GGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * * *
10524498 CGATGATCGGGGGGGTCGGGCGGGTGTGCCCACACGATGTGCGATGGGTGCTGGTGCTTGGCCCT
193 TGATGATCAGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCT
* *
10524563 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGAT
257 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
10524628 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACATTTTTTTCAAATGGTCA
322 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
*
10524693 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
387 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
* * *
10524758 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCGAACC-TCC
452 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCAT-A
** *
10524822 AAAAGTTTTGAAAATCTTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGC
516 AAAAGTTTCAAAAATCATGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGC
**
10524887 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
580 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * * *
10524952 GTGCCCAAACCCACCTACCACCCGATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGCCGACGT
645 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
* * * * * *
10525017 AGTGCTCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATTCGAAGTTCATTCCCAATC
710 AGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* ** ** * *
10525082 TAAGAT-TGGACCAGACCAAGGGTTGCGGTTGCAAGTTCGGCAGCACATAGAG-GGGACCCGGTT
775 TAAGATCT-GACCGGACTGAGGGTTGCGGCAGCAAGATCGGCAGCACATAGAGAGGGACCCGGTC
* *
10525145 GATCCTTGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC-
839 GATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCA
*
10525203 ---G-TG-----GG--T--TGA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
10525243 GATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGTCACATT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATT
* * * * *
10525307 TTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
130 TTTCTTCATC-GGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCT
* ** * * * *
10525372 AACAATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTGGTTGGACCT
194 GATGATCAGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCT
* * * *
10525437 TATATTGGCCCCCTATCCCTCATCGAACCTGGAGAACTCACACCCCTTTAAAGAGCATTTCAGAT
257 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
10525502 TTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTTTAAAATGGGGACACTTTTTTCAAATAGTCA
322 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
10525567 CAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTACATGCCAACAAA
387 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
10525622 GTAAGACGTA
Statistics
Matches: 3386, Mismatches: 494, Indels: 384
0.79 0.12 0.09
Matches are distributed among these distances:
871 16 0.00
872 281 0.08
873 281 0.08
874 231 0.07
875 5 0.00
876 1 0.00
877 1 0.00
878 3 0.00
879 3 0.00
880 2 0.00
881 3 0.00
882 2 0.00
883 3 0.00
884 4 0.00
885 3 0.00
886 1 0.00
887 3 0.00
888 2 0.00
889 98 0.03
890 32 0.01
891 1 0.00
893 8 0.00
894 6 0.00
895 3 0.00
896 12 0.00
897 188 0.06
898 575 0.17
899 469 0.14
900 299 0.09
901 30 0.01
902 8 0.00
903 5 0.00
904 3 0.00
905 6 0.00
906 8 0.00
907 4 0.00
908 4 0.00
910 4 0.00
911 1 0.00
912 6 0.00
914 2 0.00
915 1 0.00
917 3 0.00
918 1 0.00
919 1 0.00
924 50 0.01
925 4 0.00
926 50 0.01
931 1 0.00
932 1 0.00
933 3 0.00
935 1 0.00
936 1 0.00
938 5 0.00
939 1 0.00
940 5 0.00
941 1 0.00
942 5 0.00
943 4 0.00
944 7 0.00
945 6 0.00
946 5 0.00
947 5 0.00
948 4 0.00
950 97 0.03
951 7 0.00
952 3 0.00
953 8 0.00
954 7 0.00
955 2 0.00
956 6 0.00
957 6 0.00
958 1 0.00
959 1 0.00
961 2 0.00
962 1 0.00
963 1 0.00
964 1 0.00
965 2 0.00
966 3 0.00
967 4 0.00
969 1 0.00
970 3 0.00
971 2 0.00
972 1 0.00
973 1 0.00
974 2 0.00
975 21 0.01
976 108 0.03
977 53 0.02
978 260 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
TTCTTCATCGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCTGA
TGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAG
TTTCAAAAATCATGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CTGACCGGACTGAGGGTTGCGGCAGCAAGATCGGCAGCACATAGAGAGGGACCCGGTCGATCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCA
Found at i:10524163 original size:26 final size:26
Alignment explanation
Indices: 10524133--10524185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10524123 GTTGACTTAG
*
10524133 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10524159 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10524185 G
1 G
10524186 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10524348 original size:26 final size:26
Alignment explanation
Indices: 10524318--10524370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10524308 GTTGACTTAG
* *
10524318 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10524344 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10524370 G
1 G
10524371 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10524362 original size:185 final size:185
Alignment explanation
Indices: 10524050--10524399 Score: 556
Period size: 185 Copynumber: 1.9 Consensus size: 185
10524040 TAGGCAGAGG
* * *** *
10524050 GGGACCCGACCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCG
1 GGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCG
10524115 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
66 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * *
10524180 TCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGACAGCATGCGAAGA
131 TCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAGATCGACAGCATGCGAAGA
** * *
10524235 GGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGTTCG
1 GGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCG
*
10524300 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAA
66 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
10524365 TCTAAGATCAGACCAGACCAAGGGTTGCGACAGCA
131 TCTAAGATCAGACCAGACCAAGGGTTGCGACAGCA
10524400 CATGCTAGGC
Statistics
Matches: 149, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
185 149 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (185 bp):
GGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
TCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAGATCGACAGCATGCGAAGA
Found at i:10526004 original size:147 final size:147
Alignment explanation
Indices: 10525737--10526031 Score: 581
Period size: 147 Copynumber: 2.0 Consensus size: 147
10525727 GAAATATGAT
*
10525737 AGTATAATAGTTATTTTATTTTATATTTGATTTATATATAATTAAAAAGAATAAGATTAAAAAGA
1 AGTATAATAATTATTTTATTTTATATTTGATTTATATATAATTAAAAAGAATAAGATTAAAAAGA
10525802 AAATTATCATTTTTTTTATTTATGATGATTCAATCTTCTTAAAGTGAGATAGATTATTTTTAATC
66 AAATTATCATTTTTTTTATTTATGATGATTCAATCTTCTTAAAGTGAGATAGATTATTTTTAATC
10525867 TATGATATTAAACTTAC
131 TATGATATTAAACTTAC
10525884 AGTATAATAATTATTTTATTTTATATTTGATTTATATATAATTAAAAAGAATAAGATTAAAAAGA
1 AGTATAATAATTATTTTATTTTATATTTGATTTATATATAATTAAAAAGAATAAGATTAAAAAGA
10525949 AAATTATCATTTTTTTTATTTATGATGATTCAATCTTCTTAAAGTGAGATAGATTATTTTTAATC
66 AAATTATCATTTTTTTTATTTATGATGATTCAATCTTCTTAAAGTGAGATAGATTATTTTTAATC
10526014 TATGATATTAAACTTAC
131 TATGATATTAAACTTAC
10526031 A
1 A
10526032 TGTTTTATTC
Statistics
Matches: 147, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 147 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (147 bp):
AGTATAATAATTATTTTATTTTATATTTGATTTATATATAATTAAAAAGAATAAGATTAAAAAGA
AAATTATCATTTTTTTTATTTATGATGATTCAATCTTCTTAAAGTGAGATAGATTATTTTTAATC
TATGATATTAAACTTAC
Found at i:10527104 original size:26 final size:22
Alignment explanation
Indices: 10527045--10527089 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
10527035 ATATATTTTC
*
10527045 AATAAATAAA-AATTAAATAAA
1 AATAAATAAATGATTAAATAAA
10527066 AATAAATAAATGATTAAATAAA
1 AATAAATAAATGATTAAATAAA
10527088 AA
1 AA
10527090 ATAATATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (22 bp):
AATAAATAAATGATTAAATAAA
Found at i:10530172 original size:11 final size:11
Alignment explanation
Indices: 10530153--10530182 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10530143 TATTTTGACA
*
10530153 TTTTCTTTTCT
1 TTTTTTTTTCT
10530164 TTTTTTTTTCT
1 TTTTTTTTTCT
10530175 TTTTTTTT
1 TTTTTTTT
10530183 AAGTTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:10530174 original size:16 final size:15
Alignment explanation
Indices: 10530153--10530182 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10530143 TATTTTGACA
10530153 TTTTCTTTTCTTTTTT
1 TTTTCTTTT-TTTTTT
10530169 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
10530183 AAGTTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTCTTTTTTTTTT
Found at i:10535375 original size:142 final size:144
Alignment explanation
Indices: 10535156--10535413 Score: 369
Period size: 142 Copynumber: 1.8 Consensus size: 144
10535146 TAGAAAGGGC
** * *
10535156 AAAATTAGTAAAATACCCTTATAAAGGGTCTTTTTATAACTTGACCTTCTCGAGCTCAGATTTTT
1 AAAATTACCAAAATACCCTTATAAAGGGTCTTTTTATAACTTCACCTTCTCGAGCTCAAATTTTT
* * *
10535221 GTGAAATATTTCAGATCTTAATTTTATAATATTTCATAATTTTTGGTGCATTTAATATCATAATA
66 GTGAAATATTTCAGATCTTAATTTCAGAATATTTCATAATTTTTAGTGCATTTAATATCATAATA
10535286 GTACCCGAAAAGGA
131 GTACCCGAAAAGGA
* * * * *
10535300 AAAATTACCAAAATACCCTTAT-AA-GGTGTTTTTGTAATTTCACTTTCTTGAGCTCAAATTTTT
1 AAAATTACCAAAATACCCTTATAAAGGGTCTTTTTATAACTTCACCTTCTCGAGCTCAAATTTTT
*
10535363 GTGAAACT-TTTCAGATCTTAATTTCAGAATATTTCATGATTTTTAGTGCAT
66 GTGAAA-TATTTCAGATCTTAATTTCAGAATATTTCATAATTTTTAGTGCAT
10535414 CTGAAATCAT
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
142 77 0.77
143 3 0.03
144 20 0.20
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (144 bp):
AAAATTACCAAAATACCCTTATAAAGGGTCTTTTTATAACTTCACCTTCTCGAGCTCAAATTTTT
GTGAAATATTTCAGATCTTAATTTCAGAATATTTCATAATTTTTAGTGCATTTAATATCATAATA
GTACCCGAAAAGGA
Found at i:10537237 original size:7 final size:7
Alignment explanation
Indices: 10537225--10537251 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10537215 AATAAATTTT
10537225 TAAAATA
1 TAAAATA
10537232 TAAAATA
1 TAAAATA
10537239 TAAAATA
1 TAAAATA
10537246 TAAAAT
1 TAAAAT
10537252 TTGTTTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
TAAAATA
Found at i:10561298 original size:39 final size:39
Alignment explanation
Indices: 10561235--10561312 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
10561225 TTTAAATTTT
* *
10561235 AACATTTATGATCTATTTTTTTGTATTTAGACTATAATC
1 AACACTTACGATCTATTTTTTTGTATTTAGACTATAATC
10561274 AACACTTACGATCTATTTTTTTGTATTTAGACTATAATC
1 AACACTTACGATCTATTTTTTTGTATTTAGACTATAATC
10561313 TCCTCTGTAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.49
Consensus pattern (39 bp):
AACACTTACGATCTATTTTTTTGTATTTAGACTATAATC
Found at i:10565127 original size:20 final size:19
Alignment explanation
Indices: 10565098--10565147 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
10565088 ATAAATACAT
*
10565098 ATTTTATTATTAAT-TTTA
1 ATTTTATTATTAATAATTA
10565116 ATTTAATATTA-TAATAATTA
1 ATTT--TATTATTAATAATTA
10565136 ATTTTATTATTA
1 ATTTTATTATTA
10565148 TCATTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 9 0.33
19 6 0.22
20 12 0.44
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTATTATTAATAATTA
Found at i:10567516 original size:29 final size:29
Alignment explanation
Indices: 10567483--10567543 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
10567473 TTTCATTAAG
* *
10567483 GTACAAGCATAAACTTTGGTAACTGAGTT
1 GTACAAGCAAAAACTTTGGTAACCGAGTT
10567512 GTACAAGCAAAAACTTTGGTAACCGAGTT
1 GTACAAGCAAAAACTTTGGTAACCGAGTT
10567541 GTA
1 GTA
10567544 AGATTCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (29 bp):
GTACAAGCAAAAACTTTGGTAACCGAGTT
Found at i:10568718 original size:24 final size:24
Alignment explanation
Indices: 10568691--10568740 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
10568681 TATTACTTTT
10568691 ATAAAAAAAATAAATATAACACAA
1 ATAAAAAAAATAAATATAACACAA
*
10568715 ATAAAAATAATAAATATAACACAA
1 ATAAAAAAAATAAATATAACACAA
10568739 AT
1 AT
10568741 GATAACTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (24 bp):
ATAAAAAAAATAAATATAACACAA
Found at i:10569244 original size:25 final size:25
Alignment explanation
Indices: 10569208--10569302 Score: 66
Period size: 25 Copynumber: 3.6 Consensus size: 25
10569198 TTTATCATAA
*
10569208 ATAAATAT-TTAAAATAATTTGTAT
1 ATAATTATATTAAAATAATTTGTAT
*
10569232 ATAATTATATTAAATATGTAAGTGTGTATT
1 ATAATTATATTAAA-A--TAA-TTTGTA-T
* * *
10569262 ATAATTAAAAGTTAAAATAGTTTTTAT
1 ATAATT-ATA-TTAAAATAATTTGTAT
*
10569289 ATAGTTATATTAAA
1 ATAATTATATTAAA
10569303 TTAAATTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
24 7 0.13
25 10 0.18
26 3 0.05
27 6 0.11
28 7 0.13
29 7 0.13
30 7 0.13
31 3 0.05
32 5 0.09
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.45
Consensus pattern (25 bp):
ATAATTATATTAAAATAATTTGTAT
Found at i:10571366 original size:17 final size:17
Alignment explanation
Indices: 10571336--10571369 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10571326 CATTCATTAT
* *
10571336 AATTATTAATAATAAAA
1 AATTAATAAAAATAAAA
10571353 AATTAATAAAAATAAAA
1 AATTAATAAAAATAAAA
10571370 TTAATTGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATTAATAAAAATAAAA
Found at i:10571395 original size:14 final size:14
Alignment explanation
Indices: 10571336--10571455 Score: 54
Period size: 14 Copynumber: 8.8 Consensus size: 14
10571326 CATTCATTAT
10571336 AATT-ATTAATAATA
1 AATTAATTAATAA-A
*
10571350 AA-AAATTAATAAA
1 AATTAATTAATAAA
* ***
10571363 AATAAAATTAATTGT
1 AAT-TAATTAATAAA
10571378 AATTAATTAATAAA
1 AATTAATTAATAAA
* * *
10571392 AATTAGTTATTTAA
1 AATTAATTAATAAA
*
10571406 AA--AA-TAAAAAA
1 AATTAATTAATAAA
* *
10571417 AATTACTTTATAAA
1 AATTAATTAATAAA
*
10571431 AATTAAATTAA-AAT
1 AATT-AATTAATAAA
*
10571445 TATTAATTAAT
1 AATTAATTAAT
10571456 TTAAAAATAT
Statistics
Matches: 76, Mismatches: 22, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
11 6 0.08
12 1 0.01
13 10 0.13
14 44 0.58
15 15 0.20
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.38
Consensus pattern (14 bp):
AATTAATTAATAAA
Found at i:10571430 original size:24 final size:26
Alignment explanation
Indices: 10571386--10571446 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
10571376 GTAATTAATT
* *
10571386 AATAAAAATTAGTTATTTAAAAAATA
1 AATAAAAATTACTTATATAAAAAATA
*
10571412 AA-AAAAATTACTT-TATAAAAATTA
1 AATAAAAATTACTTATATAAAAAATA
*
10571436 AATTAAAATTA
1 AATAAAAATTA
10571447 TTAATTAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 11 0.37
25 17 0.57
26 2 0.07
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (26 bp):
AATAAAAATTACTTATATAAAAAATA
Found at i:10572891 original size:12 final size:12
Alignment explanation
Indices: 10572879--10572946 Score: 91
Period size: 12 Copynumber: 5.7 Consensus size: 12
10572869 ATTAATATTT
* *
10572879 TTATTGTTTTTT
1 TTATTGTTGTTG
* *
10572891 TTATTGCTATTG
1 TTATTGTTGTTG
10572903 TTATTGTTGTTG
1 TTATTGTTGTTG
10572915 TTATTGTTGTTG
1 TTATTGTTGTTG
*
10572927 TTATTGTTGTTA
1 TTATTGTTGTTG
10572939 TTATTGTT
1 TTATTGTT
10572947 ATAGGAATGC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 50 1.00
ACGTcount: A:0.12, C:0.01, G:0.18, T:0.69
Consensus pattern (12 bp):
TTATTGTTGTTG
Found at i:10572895 original size:24 final size:24
Alignment explanation
Indices: 10572863--10572943 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
10572853 ATATTAAGGA
*
10572863 TGTTG-TATTAATATTTTTATTGT
1 TGTTGTTATTAATATTGTTATTGT
* * **
10572886 TTTTTTTATTGCTATTGTTATTGT
1 TGTTGTTATTAATATTGTTATTGT
** *
10572910 TGTTGTTATTGTTGTTGTTATTGT
1 TGTTGTTATTAATATTGTTATTGT
*
10572934 TGTTATTATT
1 TGTTGTTATT
10572944 GTTATAGGAA
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 3 0.06
24 44 0.94
ACGTcount: A:0.15, C:0.01, G:0.16, T:0.68
Consensus pattern (24 bp):
TGTTGTTATTAATATTGTTATTGT
Found at i:10572909 original size:6 final size:6
Alignment explanation
Indices: 10572874--10572948 Score: 78
Period size: 6 Copynumber: 12.5 Consensus size: 6
10572864 GTTGTATTAA
* * * * *
10572874 TATTTT TATTGT TTTTTT TATTGC TATTGT TATTGT TGTTGT TATTGT
1 TATTGT TATTGT TATTGT TATTGT TATTGT TATTGT TATTGT TATTGT
* * *
10572922 TGTTGT TATTGT TGTTAT TATTGT TAT
1 TATTGT TATTGT TATTGT TATTGT TAT
10572949 AGGAATGCAG
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.13, C:0.01, G:0.16, T:0.69
Consensus pattern (6 bp):
TATTGT
Found at i:10572921 original size:9 final size:9
Alignment explanation
Indices: 10572906--10572948 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
10572896 GCTATTGTTA
*
10572906 TTGTTGTTG
1 TTGTTATTG
* *
10572915 TTATTGTTG
1 TTGTTATTG
10572924 TTGTTATTG
1 TTGTTATTG
*
10572933 TTGTTATTA
1 TTGTTATTG
10572942 TTGTTAT
1 TTGTTAT
10572949 AGGAATGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.12, C:0.00, G:0.21, T:0.67
Consensus pattern (9 bp):
TTGTTATTG
Found at i:10574191 original size:12 final size:11
Alignment explanation
Indices: 10574167--10574228 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
10574157 TTTACAAATG
10574167 AATAAATAACA
1 AATAAATAACA
10574178 AATAAATAAACA
1 AATAAAT-AACA
10574190 AAT-AA-AA-A
1 AATAAATAACA
*
10574198 AATAAA-CACA
1 AATAAATAACA
10574208 AA-AAATAACCA
1 AATAAATAA-CA
*
10574219 CATAAATAAC
1 AATAAATAAC
10574229 TAAAGCAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
8 4 0.10
9 8 0.19
10 4 0.10
11 13 0.31
12 13 0.31
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.15
Consensus pattern (11 bp):
AATAAATAACA
Found at i:10575222 original size:27 final size:25
Alignment explanation
Indices: 10575191--10575251 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 25
10575181 ATACATGTGG
10575191 ATAAAATAAAGAT-AAAATTATAAAATA
1 ATAAAATAAA-ATCAAAA--ATAAAATA
10575218 ATAAAACATAAAATCAAAAATAAAATA
1 ATAAA--ATAAAATCAAAAATAAAATA
10575245 ATAAAAT
1 ATAAAAT
10575252 TTAAAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
25 2 0.06
27 18 0.58
28 2 0.06
29 9 0.29
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.23
Consensus pattern (25 bp):
ATAAAATAAAATCAAAAATAAAATA
Found at i:10577606 original size:85 final size:85
Alignment explanation
Indices: 10577458--10577617 Score: 293
Period size: 85 Copynumber: 1.9 Consensus size: 85
10577448 AAGTAAACAC
* * *
10577458 AACAAATATGAGTACTAATAATCTTAAAAGTAAGAGATAGAGATAGAAAATCATACACTAAAATT
1 AACAAATATGAGTACTAATAATCTTAAAAGTAAGAGATAGAGATAAAAAATCAAACACCAAAATT
10577523 TATAGAGGTTTGATTCTTAT
66 TATAGAGGTTTGATTCTTAT
10577543 AACAAATATGAGTACTAATAATCTTAAAAGTAAGAGATAGAGATAAAAAATCAAACACCAAAATT
1 AACAAATATGAGTACTAATAATCTTAAAAGTAAGAGATAGAGATAAAAAATCAAACACCAAAATT
10577608 TATAGAGGTT
66 TATAGAGGTT
10577618 CGGTTCTTTT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.50, C:0.09, G:0.14, T:0.28
Consensus pattern (85 bp):
AACAAATATGAGTACTAATAATCTTAAAAGTAAGAGATAGAGATAAAAAATCAAACACCAAAATT
TATAGAGGTTTGATTCTTAT
Found at i:10579199 original size:145 final size:141
Alignment explanation
Indices: 10578991--10579378 Score: 367
Period size: 142 Copynumber: 2.7 Consensus size: 141
10578981 TAAAATTATT
* * * * *
10578991 AAAATACCC-TTT-AGGGTTATTTTCATAATTTGGC-CTTTCTAAGCTTAGATTTTTATGAAACT
1 AAAATACCCATTTAAGGG-TATTTTCGTAATTCGACATTTTC-AAGCTTAGATTTTCATGAAACT
* * * * *
10579053 TTTTAGATATTAATTTCATAATATTTCATGATTTTTGTTGCATTTGAAATTATAATAGTACCATG
64 TTTTAGAT-TTAATTTCATAATATTTCATGATTTTTGGTGCA-ATGAAATCATAACAGTACC-CG
10579118 AGAAGTGTGAAATTACC
126 AGAAGTGTG-AATTACC
* * * *
10579135 AAATTA-TCGTTATAAGGGTATTTTCGTAATTCGATATTTTCAAGCTTAGATTTTCATGAAACTT
1 AAAATACCCATT-TAAGGGTATTTTCGTAATTCGACATTTTCAAGCTTAGATTTTCATGAAACTT
* * * *
10579199 TCTATATCTTACTTTCATAATATTTCATGATTTTTGGTGCAATGAAATCATAGCAGTACCCGAGA
65 TTTAGAT-TTAATTTCATAATATTTCATGATTTTTGGTGCAATGAAATCATAACAGTACCCGAGA
* *
10579264 GGTGTGAATTGCC
129 AGTGTGAATTACC
* * * * * * * *
10579277 AAAATACCCATTTAGGGGTATTTTTGTAATTTGACCTTCTCGAGCTT-GAATTTTCA-CAAAATT
1 AAAATACCCATTTAAGGGTATTTTCGTAATTCGACATTTTCAAGCTTAG-ATTTTCATGAAACTT
10579340 TTTCAGATTTCAA-TTCTATAATATTTCATGATTTTTGGT
65 TTT-AGATTT-AATTTC-ATAATATTTCATGATTTTTGGT
10579379 ACTGTAAAAT
Statistics
Matches: 200, Mismatches: 35, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
141 13 0.06
142 72 0.36
143 13 0.06
144 22 0.11
145 72 0.36
146 8 0.04
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (141 bp):
AAAATACCCATTTAAGGGTATTTTCGTAATTCGACATTTTCAAGCTTAGATTTTCATGAAACTTT
TTAGATTTAATTTCATAATATTTCATGATTTTTGGTGCAATGAAATCATAACAGTACCCGAGAAG
TGTGAATTACC
Found at i:10581740 original size:418 final size:422
Alignment explanation
Indices: 10580944--10581776 Score: 1086
Period size: 418 Copynumber: 2.0 Consensus size: 422
10580934 AGACTTTGAA
* * *
10580944 AGAGGTTCATAAATTCTTAAAATTCAAACCCGAACCTACCCAAATCCCCAAACTCGTTTTAAATT
1 AGAGGTTCATAAATTCTTAAAATTCAAACCCAAACCTACCAAAAACCCCAAACTCGTTTTAAATT
* *
10581009 TCTAAGGATTTGTATGAAAACCTTTCATGAAGTAATCCGTTCTCGAATGCTACCTAGATGTTGAG
66 TCTAAGGATTTGTATGAAAACCTTTCATGAAGTAATACGTTCTCGAATGCTACCTAAATGTTGAG
*** * **
10581074 ATATTTAAGAAATTTTATTTCATTAAGAATTTTCATACATTTTTGTAACTTAAAATAAATCTGTT
131 ATATTTAAGAAATTTTATTTCATTAAGAATTTTCATACATTTTCACAACTCAAAATAAATCTCAT
* * * * ***
10581139 TGTTAAAATAACAAATATAAAAATATAAAAGAATAAAAAAAATATGATGGGATTTTAAATATAAA
196 TGTT-AAACAACAAATACAAAAATACAAAAGAATAAAAAAAATAGGACAAGATTTTAAATATAAA
** * *
10581204 AATTTGCACCCAAACTCTACCTAAATGTTGAAAAGTCCTGGTGATCTCTTTACATTTGAAAACTC
260 AATTCACACCCAAACTCTACCTAAATGTTAAAAAGTCCTGGTGATCTCTTTACATTTGAAAACCC
*** ** * * *
10581269 AATTCTTAAATTTGTATTTGATTGTCATTGGCATATGTTTCATTTTCAAATTAATGTCGTAATTT
325 AATTCTTAAATTCACATTTGATCATCATTGGCATATATTTCATCTTAAAATTAATGTCGTAATTT
10581334 ATAATGCATATATATATATATATATGTTTTTAG
390 ATAATGCATATATATATATATATATGTTTTTAG
** *
10581367 AGAGGTTTGTAAATTCTTAAAATTCAAACCCAAACCTACCAAAAACTCCAAACTC-TTTTAAATT
1 AGAGGTTCATAAATTCTTAAAATTCAAACCCAAACCTACCAAAAACCCCAAACTCGTTTTAAATT
* * * **
10581431 TCTAAGGATTTGTATGAAAACTTTTTATGAAGTAATATGTTCTCGAATGCTATTTAAATGTT-AG
66 TCTAAGGATTTGTATGAAAACCTTTCATGAAGTAATACGTTCTCGAATGCTACCTAAATGTTGA-
* *
10581495 GGTATTT-AGAAATTTTTATTTCATTAAGAATTTTTATACATTTTCACAACTCAAAATAAAT-TC
130 GATATTTAAGAAA-TTTTATTTCATTAAGAATTTTCATACATTTTCACAACTCAAAATAAATCTC
* * * * * *
10581558 ATT-TT-GACCACGATTACAAAAATACAAAATAATAAAAATAATAGGACAAGATTTTAAATATAA
194 ATTGTTAAACAACAAATACAAAAATACAAAAGAATAAAAAAAATAGGACAAGATTTTAAATATAA
* * * * *
10581621 AAATTCACACCCAAACTCTACTTAGATGTTAAAAAGTCCAT-GTGGTCTCTTTATATTTGAAAGC
259 AAATTCACACCCAAACTCTACCTAAATGTTAAAAAGTCC-TGGTGATCTCTTTACATTTGAAAAC
* * *
10581685 CCAATTCTTAAATTCACATTTGATCATCATTTGCATATATTTCATCTTAAAATTAATGTCTTCAT
323 CCAATTCTTAAATTCACATTTGATCATCATTGGCATATATTTCATCTTAAAATTAATGTCGTAAT
*
10581750 TTATGATGCATATATATATATATATAT
388 TTATAATGCATATATATATATATATAT
10581777 ATGTTTGCTT
Statistics
Matches: 352, Mismatches: 55, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
418 178 0.51
419 1 0.00
420 2 0.01
421 9 0.03
422 113 0.32
423 49 0.14
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.38
Consensus pattern (422 bp):
AGAGGTTCATAAATTCTTAAAATTCAAACCCAAACCTACCAAAAACCCCAAACTCGTTTTAAATT
TCTAAGGATTTGTATGAAAACCTTTCATGAAGTAATACGTTCTCGAATGCTACCTAAATGTTGAG
ATATTTAAGAAATTTTATTTCATTAAGAATTTTCATACATTTTCACAACTCAAAATAAATCTCAT
TGTTAAACAACAAATACAAAAATACAAAAGAATAAAAAAAATAGGACAAGATTTTAAATATAAAA
ATTCACACCCAAACTCTACCTAAATGTTAAAAAGTCCTGGTGATCTCTTTACATTTGAAAACCCA
ATTCTTAAATTCACATTTGATCATCATTGGCATATATTTCATCTTAAAATTAATGTCGTAATTTA
TAATGCATATATATATATATATATGTTTTTAG
Found at i:10587157 original size:34 final size:33
Alignment explanation
Indices: 10587119--10587182 Score: 83
Period size: 34 Copynumber: 1.9 Consensus size: 33
10587109 GTATTCTAAA
10587119 AAATGAACTTCCAAGAATACAATGTAATTCTCAT
1 AAATGAACTTCCAAGAATACAATG-AATTCTCAT
* ***
10587153 AAATGAATTTTTGAGAATACAATGAATTCT
1 AAATGAACTTCCAAGAATACAATGAATTCT
10587183 TGGAAATGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 6 0.23
34 20 0.77
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (33 bp):
AAATGAACTTCCAAGAATACAATGAATTCTCAT
Found at i:10587190 original size:33 final size:34
Alignment explanation
Indices: 10587132--10587204 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 34
10587122 TGAACTTCCA
* * *
10587132 AGAATACAATGTAATTCTCATAAATGAATTTTTG
1 AGAATACAATGTAATTCTCAGAAATGAAATTTCG
**
10587166 AGAATACAATG-AATTCTTGGAAATGAAATTTCG
1 AGAATACAATGTAATTCTCAGAAATGAAATTTCG
10587199 AGAATA
1 AGAATA
10587205 TATAATATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 23 0.68
34 11 0.32
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (34 bp):
AGAATACAATGTAATTCTCAGAAATGAAATTTCG
Found at i:10587316 original size:18 final size:19
Alignment explanation
Indices: 10587293--10587330 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
10587283 CTCGAAAATA
*
10587293 TATTTTCG-AGAATTACAT
1 TATTTTCGTAGAAATACAT
*
10587311 TATTTTTGTAGAAATACAT
1 TATTTTCGTAGAAATACAT
10587330 T
1 T
10587331 TCTAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (19 bp):
TATTTTCGTAGAAATACAT
Found at i:10589111 original size:6 final size:6
Alignment explanation
Indices: 10589100--10589137 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
10589090 AGCCCCCCAT
* *
10589100 CCCTCC CCCTCC GCGTCC CCCT-C CCCTCC CCCTCC CCC
1 CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC CCC
10589138 ATGCTAAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.00, C:0.79, G:0.05, T:0.16
Consensus pattern (6 bp):
CCCTCC
Found at i:10589118 original size:12 final size:11
Alignment explanation
Indices: 10589100--10589136 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
10589090 AGCCCCCCAT
10589100 CCCTCCCCCTC
1 CCCTCCCCCTC
*
10589111 CGCGTCCCCCTC
1 C-CCTCCCCCTC
10589123 CCCTCCCCCTC
1 CCCTCCCCCTC
10589134 CCC
1 CCC
10589137 CATGCTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.00, C:0.78, G:0.05, T:0.16
Consensus pattern (11 bp):
CCCTCCCCCTC
Found at i:10589135 original size:17 final size:18
Alignment explanation
Indices: 10589100--10589137 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
10589090 AGCCCCCCAT
* *
10589100 CCCTCCCCCTCCGCGTCC
1 CCCTCCCCCTCCCCCTCC
10589118 CCCT-CCCCTCCCCCTCC
1 CCCTCCCCCTCCCCCTCC
10589135 CCC
1 CCC
10589138 ATGCTAAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.00, C:0.79, G:0.05, T:0.16
Consensus pattern (18 bp):
CCCTCCCCCTCCCCCTCC
Found at i:10594763 original size:22 final size:22
Alignment explanation
Indices: 10594737--10594780 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
10594727 TGTATATTTA
*
10594737 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
10594759 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
10594781 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:10594954 original size:23 final size:25
Alignment explanation
Indices: 10594922--10594996 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
10594912 GGAAGAAAAA
* *
10594922 TTTTTA-GCCTTCATTGCTG-A-CT
1 TTTTTAGGCCTTCATTGCCGAATCC
*
10594944 TTTTTAGGCCTTCACTGCCGAATCC
1 TTTTTAGGCCTTCATTGCCGAATCC
* *
10594969 TATTTAGGCCTTCATTGCCGAACCC
1 TTTTTAGGCCTTCATTGCCGAATCC
10594994 TTT
1 TTT
10594997 CAAAGAAAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
22 6 0.14
23 11 0.26
24 1 0.02
25 25 0.58
ACGTcount: A:0.16, C:0.28, G:0.15, T:0.41
Consensus pattern (25 bp):
TTTTTAGGCCTTCATTGCCGAATCC
Found at i:10598655 original size:22 final size:22
Alignment explanation
Indices: 10598629--10598671 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
10598619 TGTATATTTA
*
10598629 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
10598651 TATTTGTATCCCTAGAATTAA
1 TATTTGTATCCCTAGAATTAA
10598672 AGAAGATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:10603447 original size:19 final size:19
Alignment explanation
Indices: 10603423--10603474 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 19
10603413 ATTTAATTTT
10603423 ATATTTATATTAAAAAATA
1 ATATTTATATTAAAAAATA
*
10603442 ATATTTTATATTTTAAAAATA
1 ATA-TTTATA-TTAAAAAATA
10603463 ATATTT-TATTAA
1 ATATTTATATTAA
10603475 TTTCGGATCG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 3 0.10
19 5 0.17
20 9 0.31
21 12 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATTTATATTAAAAAATA
Found at i:10603449 original size:20 final size:21
Alignment explanation
Indices: 10603426--10603471 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
10603416 TAATTTTATA
10603426 TTTATA-TTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
*
10603446 TTTATATTTTAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
10603467 TTTAT
1 TTTAT
10603472 TAATTTCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTATATTTAAAAAATAATAT
Found at i:10605857 original size:157 final size:161
Alignment explanation
Indices: 10605562--10605888 Score: 518
Period size: 157 Copynumber: 2.0 Consensus size: 161
10605552 AAATTTAACA
*
10605562 AAAAAAAATTAACTCCAAAGATTTGCAAAAGCCATGGTATATAATTCAAACTCATGTACCAATAA
1 AAAAAAAATTAACTCCAAAGATTTGCAAAAGCCATAGTATATAATTCAAACTCATGTACCAAT--
* ** * *
10605627 AAAAGGCTTCACATTTACAACATAATGAAAAGAACATGGATCATAACATATTTCTAGCTGTATCA
64 AAAAGG--TAACATTTACAACATAATGAAAAGAACAACGATAATAACATATTTCTAGCTGCATCA
10605692 AGAAAGGCTTAAGATTACCATTAGATCAAGTGC-C
127 AGAAAGGCTTAAGATTACCATTAGATCAAGTGCAC
* *
10605726 AAAAAAAATTAACTCCAAAGATTTGCAAAAGCCATAGTATGTAATTCAAACTCATGTACCAAT-C
1 AAAAAAAATTAACTCCAAAGATTTGCAAAAGCCATAGTATATAATTCAAACTCATGTACCAATAA
10605790 AA-G-AACATTTACAACATAATGAAAAGAACAACGATAATAACATATTTCTAGCTGCATCAAGAA
66 AAGGTAACATTTACAACATAATGAAAAGAACAACGATAATAACATATTTCTAGCTGCATCAAGAA
10605853 AGGCTTAAGATTACCATTAGATCAAGTGCAC
131 AGGCTTAAGATTACCATTAGATCAAGTGCAC
10605884 AAAAA
1 AAAAA
10605889 GAAGCTATAG
Statistics
Matches: 154, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
157 84 0.55
158 6 0.04
160 1 0.01
161 2 0.01
164 61 0.40
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.24
Consensus pattern (161 bp):
AAAAAAAATTAACTCCAAAGATTTGCAAAAGCCATAGTATATAATTCAAACTCATGTACCAATAA
AAGGTAACATTTACAACATAATGAAAAGAACAACGATAATAACATATTTCTAGCTGCATCAAGAA
AGGCTTAAGATTACCATTAGATCAAGTGCAC
Found at i:10609316 original size:44 final size:44
Alignment explanation
Indices: 10609226--10609316 Score: 128
Period size: 44 Copynumber: 2.1 Consensus size: 44
10609216 GATTTAATTT
* * * * **
10609226 TTTTTAAAATTTAAAAGGGCTCCTCTCAATAGAGGCTTAAGGAC
1 TTTTGAAAATTTAAAAGGGCTCATCTAAATAGAGGCTCAACAAC
10609270 TTTTGAAAATTTAAAAGGGCTCATCTAAATAGAGGCTCAACAAC
1 TTTTGAAAATTTAAAAGGGCTCATCTAAATAGAGGCTCAACAAC
10609314 TTT
1 TTT
10609317 AAAATTCATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32
Consensus pattern (44 bp):
TTTTGAAAATTTAAAAGGGCTCATCTAAATAGAGGCTCAACAAC
Found at i:10609407 original size:48 final size:47
Alignment explanation
Indices: 10609288--10609815 Score: 536
Period size: 48 Copynumber: 10.9 Consensus size: 47
10609278 ATTTAAAAGG
* * * *
10609288 GCTCATCTAAATAGAGGCTCAACAACTTTAAAATTCATAATCATGGAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAATTC---ATCTTGAAAAA
* * *
10609338 GCTCCTCTAGGTAGAGGCTCAACAACTTTAAAATTTTATCTTAAAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAA-TTCATCTTGAAAAA
* * ** * *
10609386 GCTCTTATAAACAGAAGCTCAACAACTTTAAAATTCATCATTTTGGAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAATTCATC---TTGAAAAA
* * *
10609436 GCTTCTCTAAGTAGAGGCTCAACAACTTTAAAGAATCATCCTAGAAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTTAAA-ATTCAT-CTTGAAAAA
* *
10609485 GCTCCTCTAAGTAGAGGTTCAACAACTTTAAAATTCATCTTAAAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAA
* * *
10609532 GCTCCTCTAAATAGAGGCTCAATAACTTTAAAAATCATTATCTTGGAAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTT-AAAAT--TCATCTT-GAAAAA
* *
10609583 -CTCCTCTAAGTAAAGGCTCAACAATTTTAAAAATTCATCTTGAAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTT-AAAATTCATCTTGAAAAA
* * * *
10609630 ACTCCTCTAAGCAGAGGCTCAACAACTTTAAAACCATCATCTTGGAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAA--TTCATCTTGAAAAA
* * * *
10609679 GCTCCTCTAAGCAAAGGTTCAACAACTTTAAAAATCCATCTTGAAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTT-AAAATTCATCTTGAAAAA
* *
10609727 GCTCCTCTAAGTAGAAGCTCAATAACTTTAAAATTCATCTTGAAAAA
1 GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAA
* * * * *
10609774 GCTCTTTTAAGCAGAGGTTCAACAATTTTAAAAATCTCATCT
1 GCTCCTCTAAGTAGAGGCTCAACAACTTT-AAAAT-TCATCT
10609816 GTTCTCGAAA
Statistics
Matches: 398, Mismatches: 64, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
47 87 0.22
48 116 0.29
49 80 0.20
50 102 0.26
51 12 0.03
52 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.28
Consensus pattern (47 bp):
GCTCCTCTAAGTAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAA
Found at i:10609678 original size:97 final size:94
Alignment explanation
Indices: 10609302--10609815 Score: 537
Period size: 98 Copynumber: 5.3 Consensus size: 94
10609292 ATCTAAATAG
* * *
10609302 AGGCTCAACAACTTTAAAATTCATAATCATGGAAAAGCTCCTCTAGGTAGAGGCTCAACAACTTT
1 AGGCTCAACAACTTTAAAATTC---ATCTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTT
* * * * * *
10609367 AAAATTTTATCTTAAAAAAGCTCTTATAAACAGA
63 AAAA-ATCATCTTGAAAAAGCTCCTCTAAGCA-A
* *
10609401 A-GCTCAACAACTTTAAAATTCATCATTTTGGAAAAGCTTCTCTAAGTAGAGGCTCAACAACTTT
1 AGGCTCAACAACTTTAAAATTCATC---TTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTT
* * *
10609465 AAAGAATCATCCTAGAAAAAGCTCCTCTAAGTAG
63 AAA-AATCAT-CTTGAAAAAGCTCCTCTAAGCAA
* * * *
10609499 AGGTTCAACAACTTTAAAATTCATCTTAAAAAAGCTCCTCTAAATAGAGGCTCAATAACTTTAAA
1 AGGCTCAACAACTTTAAAATTCATCTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAAA
*
10609564 AATCATTATCTTGGAAAAA-CTCCTCTAAGTAA
66 AATC---ATCTT-GAAAAAGCTCCTCTAAGCAA
* * *
10609596 AGGCTCAACAATTTTAAAAATTCATCTTGAAAAAACTCCTCTAAGCAGAGGCTCAACAACTTTAA
1 AGGCTCAACAACTTT-AAAATTCATCTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAA
*
10609661 AACCATCATCTTGGAAAAGCTCCTCTAAGCAA
65 AA--ATCATCTTGAAAAAGCTCCTCTAAGCAA
* * * *
10609693 AGGTTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCCTCTAAGTAGAAGCTCAATAACTTTAA
1 AGGCTCAACAACTTT-AAAATTCATCTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAA
* * * *
10609758 AATTCATCTTGAAAAAGCTCTTTTAAGCAG
65 AAATCATCTTGAAAAAGCTCCTCTAAGCAA
* *
10609788 AGGTTCAACAATTTTAAAAATCTCATCT
1 AGGCTCAACAACTTT-AAAAT-TCATCT
10609816 GTTCTCGAAA
Statistics
Matches: 357, Mismatches: 43, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
95 50 0.14
96 45 0.13
97 104 0.29
98 115 0.32
99 40 0.11
100 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.28
Consensus pattern (94 bp):
AGGCTCAACAACTTTAAAATTCATCTTGAAAAAGCTCCTCTAAGTAGAGGCTCAACAACTTTAAA
AATCATCTTGAAAAAGCTCCTCTAAGCAA
Found at i:10610606 original size:17 final size:17
Alignment explanation
Indices: 10610568--10610605 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
10610558 TGAGTCATTA
*
10610568 TTTTTCTTTTTTTTTAC
1 TTTTTCATTTTTTTTAC
10610585 TTTTTCATTTTTTTT-C
1 TTTTTCATTTTTTTTAC
10610601 TTTTT
1 TTTTT
10610606 TTTCAAGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTCATTTTTTTTAC
Found at i:10610608 original size:9 final size:9
Alignment explanation
Indices: 10610568--10610609 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
10610558 TGAGTCATTA
10610568 TTTTTCTTT
1 TTTTTCTTT
**
10610577 TTTTT-TAC
1 TTTTTCTTT
10610585 TTTTTCATTT
1 TTTTTC-TTT
10610595 TTTTTCTTT
1 TTTTTCTTT
10610604 TTTTTC
1 TTTTTC
10610610 AAGCAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
8 6 0.22
9 14 0.52
10 7 0.26
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:10617991 original size:14 final size:14
Alignment explanation
Indices: 10617972--10617998 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10617962 TCACATGTCG
10617972 AAAAAAATTTTTTA
1 AAAAAAATTTTTTA
10617986 AAAAAAATTTTTT
1 AAAAAAATTTTTT
10617999 TTTGAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAAAAATTTTTTA
Found at i:10623190 original size:15 final size:15
Alignment explanation
Indices: 10623170--10623207 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
10623160 AAAGGAGGAA
10623170 AAAAGAAAAAAAAAG
1 AAAAGAAAAAAAAAG
*
10623185 AAAAGAAAGAAAAAG
1 AAAAGAAAAAAAAAG
10623200 AAAA-AAAA
1 AAAAGAAAA
10623208 TAATTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAAAAAG
Found at i:10623407 original size:20 final size:20
Alignment explanation
Indices: 10623382--10623420 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
10623372 ATATTAATGT
10623382 TGCATAAGCAACTTGATTAC
1 TGCATAAGCAACTTGATTAC
10623402 TGCATAAGCAACTTGATTA
1 TGCATAAGCAACTTGATTA
10623421 AATATATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (20 bp):
TGCATAAGCAACTTGATTAC
Found at i:10624498 original size:33 final size:34
Alignment explanation
Indices: 10624456--10624524 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 34
10624446 TTTAATATAT
10624456 AAATAAAAATTTATCATTATAC-AATAAATTAATA
1 AAATAAAAATTTATCATTATACAAAT-AATTAATA
* *
10624490 AAAT-AAAATTTATTATTATATAAATAATTAATA
1 AAATAAAAATTTATCATTATACAAATAATTAATA
10624523 AA
1 AA
10624525 TAATATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
33 25 0.78
34 7 0.22
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (34 bp):
AAATAAAAATTTATCATTATACAAATAATTAATA
Found at i:10634875 original size:24 final size:24
Alignment explanation
Indices: 10634848--10634905 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
10634838 TTTTTGATAT
*
10634848 TCAAAAAGATATCTTTTAGAGAAA
1 TCAACAAGATATCTTTTAGAGAAA
10634872 TCAACAAGATATCTTTTAGAGAAA
1 TCAACAAGATATCTTTTAGAGAAA
10634896 TCAACAAGAT
1 TCAACAAGAT
10634906 TTCGAATAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (24 bp):
TCAACAAGATATCTTTTAGAGAAA
Found at i:10642520 original size:9 final size:9
Alignment explanation
Indices: 10642506--10642530 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10642496 GATAATGTAA
10642506 AACAGCTAC
1 AACAGCTAC
10642515 AACAGCTAC
1 AACAGCTAC
10642524 AACAGCT
1 AACAGCT
10642531 GTTAGGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.32, G:0.12, T:0.12
Consensus pattern (9 bp):
AACAGCTAC
Found at i:10643262 original size:30 final size:31
Alignment explanation
Indices: 10643206--10643268 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
10643196 TTTCTCTACA
*
10643206 AATCCTAACCCAAGATTTAGTTTTTA-CAAT
1 AATCCTAACCCAAGATTTAGTCTTTACCAAT
10643236 AATCCTAA-CCAAGGATTATA-TCTTTACCAAT
1 AATCCTAACCCAA-GATT-TAGTCTTTACCAAT
10643267 AA
1 AA
10643269 CCATTTTACA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 4 0.14
30 17 0.59
31 8 0.28
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (31 bp):
AATCCTAACCCAAGATTTAGTCTTTACCAAT
Found at i:10645552 original size:2 final size:2
Alignment explanation
Indices: 10645545--10645583 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
10645535 TTGACACCCT
10645545 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10645584 TCTCTCTTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10651922 original size:14 final size:14
Alignment explanation
Indices: 10651886--10651922 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
10651876 GCAATTCAAA
*
10651886 TAGCATCTCCCAAG
1 TAGCATCTTCCAAG
10651900 TAGCATCTTCCAAG
1 TAGCATCTTCCAAG
10651914 TAGCATCTT
1 TAGCATCTT
10651923 TTTAGAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (14 bp):
TAGCATCTTCCAAG
Found at i:10660206 original size:14 final size:14
Alignment explanation
Indices: 10660187--10660214 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10660177 CTTATTTGCC
10660187 TCTTTTTTTTTTTT
1 TCTTTTTTTTTTTT
10660201 TCTTTTTTTTTTTT
1 TCTTTTTTTTTTTT
10660215 AAAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (14 bp):
TCTTTTTTTTTTTT
Found at i:10660208 original size:13 final size:13
Alignment explanation
Indices: 10660190--10660214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10660180 ATTTGCCTCT
10660190 TTTTTTTTTTTTC
1 TTTTTTTTTTTTC
10660203 TTTTTTTTTTTT
1 TTTTTTTTTTTT
10660215 AAAATTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.04, G:0.00, T:0.96
Consensus pattern (13 bp):
TTTTTTTTTTTTC
Found at i:10662052 original size:3 final size:3
Alignment explanation
Indices: 10662044--10662075 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
10662034 TAAAATTTTA
*
10662044 TTG TTG TTG TTG TTG TTG TTG TTG TTA TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
10662076 ACAGGAGCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.28, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:10663343 original size:15 final size:15
Alignment explanation
Indices: 10663312--10663388 Score: 54
Period size: 15 Copynumber: 4.9 Consensus size: 15
10663302 TAAGATGAAT
10663312 AAATAA-ATA-TTATA
1 AAATAATATATTTA-A
10663326 AAATAATATATTTAA
1 AAATAATATATTTAA
*
10663341 AAATAATA-ATATAAA
1 AAATAATATAT-TTAA
10663356 AAATGAAT-TAGTTATAA
1 AAAT-AATATA-TT-TAA
10663373 AAGATAATATTATTTA
1 AA-ATAATA-TATTTA
10663389 CCAAATTAGT
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
14 8 0.16
15 19 0.37
16 8 0.16
17 10 0.20
18 4 0.08
19 2 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (15 bp):
AAATAATATATTTAA
Found at i:10675110 original size:161 final size:161
Alignment explanation
Indices: 10674918--10676069 Score: 1223
Period size: 161 Copynumber: 7.2 Consensus size: 161
10674908 AAATAAAAGA
** * * *
10674918 TCAATCATTTGGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAACATAACAATA
1 TCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* * ** **
10674983 ATAGTAAGTTTATATTTTTATCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAACGACAACT
66 ATAGCAAATTTGCATTTTTGCCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAACGACAACT
*
10675048 TTTTCACACATATCAATCGTGAAAACCAAGT
131 TTTTCACACATATCAATCGTGGAAACCAAGT
* * *
10675079 TCAATAATTCAGACAAGTTTAATATCATGTATTGAAGCTACCCAAA-TGTTAAAATAAAACAATA
1 TCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* ** *
10675143 ACAAAAAATTTGCATTTTTGCCTTTTAA-TG-ATAAAAAAGTCCTAAATAGATGTAAACGACAAC
66 ATAGCAAATTTGCATTTTTGCCTTTTAACAGCA-AAAAAAGTCCTAAATAGATGTAAACGACAAC
*
10675206 TTTTTCACACATAT-GATCCGTGGAAACCAAGT
130 TTTTTCACACATATCAAT-CGTGGAAACCAAGT
* * * *
10675238 TCAATCATTCGGACAAGTTTAATATTATGTAATGAAGCTATCGAAACTGTTAAAATAGAACAATA
1 TCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* * * * * ** *
10675303 ATAACAAATTTACACTTTTGCCTTTTAACAGTAAAAAAAGTCTTAAATAGACATAAACGATAAC-
66 ATAGCAAATTTGCATTTTTGCCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAACGACAACT
* * *
10675367 TTTTCATACATATTAACCGT-GAAACCAAGT
131 TTTTCACACATATCAATCGTGGAAACCAAGT
* * * *
10675397 TCAATCATTC-GAATAAATTTAATATCATGTATTCAAGCTATCCAAACTATTAAAATAGAACAAT
1 TCAATCATTCAG-ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAAT
* * *
10675461 AATAGCAAATTTGCATTTTTGCCTTTTAACAGCATAAAAAGTTCTAAATATATGTAAACGACAAC
65 AATAGCAAATTTGCATTTTTGCCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAACGACAAC
* * * * *
10675526 GTTTTCACATATATTAATCATGGAAACCATGT
130 TTTTTCACACATATCAATCGTGGAAACCAAGT
* * * *
10675558 TCAATCATTCAAACAAGTTTAATATCATATATTGAAGCTATCCAAATTGTTAACATAGAACAATA
1 TCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* * * * * * *
10675623 ACAGCAATTTTGCATTTTTGCCTTTTAAC-GACAAAAAAAAAATCCTAAACAAATGTAAATGATA
66 ATAGCAAATTTGCATTTTTGCCTTTTAACAG-C--AAAAAAAGTCCTAAATAGATGTAAACGACA
* *
10675687 ACTTTTTCACACATATCAA-CTGTGAAAACCTAGT
128 ACTTTTTCACACATATCAATC-GTGGAAACCAAGT
* * * * * * * *
10675721 TCAATTATTC-GAACAAGTTTAATATCATGTATTTAAGCTATCTAAAATATTATAACAAAACAAT
1 TCAATCATTCAG-ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAAT
* * * * ** **
10675785 AATACCAAATTTGCATTTTTTTCCTTTTAACAACACAAAAAGTCCTAAATAGACATAAATAACAA
65 AATAGCAAATTTGCA-TTTTTGCCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAACGACAA
*
10675850 CTTTTTCACACATATCAATCATGGAAACCAAGT
129 CTTTTTCACACATATCAATCGTGGAAACCAAGT
* * * * *
10675883 TCAATCATTCAAACAAGTTTAATATCATGTATTGAAGCTATCAAAACTGCTAAAACATAACAATA
1 TCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
* * * * * * * ** * *
10675948 ACTA-CAAATTTGCTTTTTTACCTTTTAACGGTACAAAAAGTCTTAAATAAACATAAATTG-TAA
66 A-TAGCAAATTTGCATTTTTGCCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAA-CGACAA
*
10676011 CTTTTTCACACATATCAA-CAATGGAAACCAAGT
129 CTTTTTCACACATATCAATC-GTGGAAACCAAGT
** * *
10676044 TCAATTTTTTAGATAAGTTTAATATC
1 TCAATCATTCAGACAAGTTTAATATC
10676070 GTAAACTTAC
Statistics
Matches: 835, Mismatches: 134, Indels: 44
0.82 0.13 0.04
Matches are distributed among these distances:
158 4 0.00
159 218 0.26
160 109 0.13
161 255 0.31
162 119 0.14
163 115 0.14
164 15 0.02
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (161 bp):
TCAATCATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATA
ATAGCAAATTTGCATTTTTGCCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAACGACAACT
TTTTCACACATATCAATCGTGGAAACCAAGT
Found at i:10675502 original size:320 final size:320
Alignment explanation
Indices: 10674930--10676048 Score: 1307
Period size: 320 Copynumber: 3.5 Consensus size: 320
10674920 AATCATTTGG
* * ** *
10674930 ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAACATAACAATAATAGTAAGTTTA
1 ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAATAATAACAAATTTA
* * * * ** *
10674995 TATTTTTATCTTTTAACAGCAAAAAAAGTCCTAAATAGATGTAAACGACAACTTTTTCACACATA
66 CATTTTTACCTTTTAACAGTAAAAAAAGTCCTAAATAAACATAAACGATAACTTTTTCACACATA
* * *
10675060 TCAATCGTGAAAACCAAGTTCAATAATTC-AGACAAGTTTAATATCATGTATTGAAGCTACCCAA
131 TCAACCGTGAAAACCAAGTTCAATAATTCGA-ACAAGTTTAATATCATGTATTCAAGCTATCCAA
* * * *
10675124 ATGTTAAAATAAAACAATAACAAAAAATTTGCATTTTTGCCTTTTAA-TG-ATAAAAAAGTCCTA
195 ATATTAAAATAAAACAATAATAACAAATTTGCATTTTTGCCTTTTAACAGCAT-AAAAAGTCCTA
* * **
10675187 AATAGATGTAAACGACAACTTTTTCACACATATGATCCGTGGAAACCAAGTTCAATCATTCGG
259 AATAGATGTAAACGACAACTTTTTCACACATATAAT-CATGGAAACCAAGTTCAATCATTCAA
* * * *
10675250 ACAAGTTTAATATTATGTAATGAAGCTATCGAAACTGTTAAAATAGAACAATAATAACAAATTTA
1 ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAATAATAACAAATTTA
* * * * *
10675315 CACTTTTGCCTTTTAACAGTAAAAAAAGTCTTAAATAGACATAAACGATAAC-TTTTCATACATA
66 CATTTTTACCTTTTAACAGTAAAAAAAGTCCTAAATAAACATAAACGATAACTTTTTCACACATA
* * * *
10675379 TTAACCGTG-AAACCAAGTTCAATCATTCGAATAAATTTAATATCATGTATTCAAGCTATCCAAA
131 TCAACCGTGAAAACCAAGTTCAATAATTCGAACAAGTTTAATATCATGTATTCAAGCTATCCAAA
* * *
10675443 CTATTAAAATAGAACAATAATAGCAAATTTGCATTTTTGCCTTTTAACAGCATAAAAAGTTCTAA
196 -TATTAAAATAAAACAATAATAACAAATTTGCATTTTTGCCTTTTAACAGCATAAAAAGTCCTAA
* * * *
10675508 ATATATGTAAACGACAACGTTTTCACATATATTAATCATGGAAACCATGTTCAATCATTCAA
260 ATAGATGTAAACGACAACTTTTTCACACATA-TAATCATGGAAACCAAGTTCAATCATTCAA
* * * * * * * *
10675570 ACAAGTTTAATATCATATATTGAAGCTATCCAAATTGTTAACATAGAACAATAACAGCAATTTTG
1 ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAATAATAACAAATTTA
* ** * * ** *
10675635 CATTTTTGCCTTTTAACGACAAAAAAAAAATCCTAAACAAATGTAAATGATAACTTTTTCACACA
66 CATTTTTACCTTTTAAC-A-GTAAAAAAAGTCCTAAATAAACATAAACGATAACTTTTTCACACA
* * * * *
10675700 TATCAACTGTGAAAACCTAGTTCAATTATTCGAACAAGTTTAATATCATGTATTTAAGCTATCTA
129 TATCAACCGTGAAAACCAAGTTCAATAATTCGAACAAGTTTAATATCATGTATTCAAGCTATC-C
* * * * * *
10675765 AAATATTATAACAAAACAATAATACCAAATTTGCATTTTTTTCCTTTTAACAACACAAAAAGTCC
193 AAATATTAAAATAAAACAATAATAACAAATTTGCA-TTTTTGCCTTTTAACAGCATAAAAAGTCC
** **
10675830 TAAATAGACATAAATAACAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAATCATTCAA
257 TAAATAGATGTAAACGACAACTTTTTCACACATAT-AATCATGGAAACCAAGTTCAATCATTCAA
* * *
10675895 ACAAGTTTAATATCATGTATTGAAGCTATCAAAACTGCTAAAACATAACAATAACT-ACAAATTT
1 ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAATAA-TAACAAATTT
* * * * * *
10675959 GCTTTTTTACCTTTTAACGGTACAAAAAGTCTTAAATAAACATAAATTG-TAACTTTTTCACACA
65 ACATTTTTACCTTTTAACAGTAAAAAAAGTCCTAAATAAACATAAA-CGATAACTTTTTCACACA
** *
10676023 TATCAACAATGGAAACCAAGTTCAAT
129 TATCAACCGTGAAAACCAAGTTCAAT
10676049 TTTTTAGATA
Statistics
Matches: 674, Mismatches: 111, Indels: 25
0.83 0.14 0.03
Matches are distributed among these distances:
318 48 0.07
319 60 0.09
320 232 0.34
321 6 0.01
322 25 0.04
323 74 0.11
324 77 0.11
325 152 0.23
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (320 bp):
ACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAACAGAACAATAATAACAAATTTA
CATTTTTACCTTTTAACAGTAAAAAAAGTCCTAAATAAACATAAACGATAACTTTTTCACACATA
TCAACCGTGAAAACCAAGTTCAATAATTCGAACAAGTTTAATATCATGTATTCAAGCTATCCAAA
TATTAAAATAAAACAATAATAACAAATTTGCATTTTTGCCTTTTAACAGCATAAAAAGTCCTAAA
TAGATGTAAACGACAACTTTTTCACACATATAATCATGGAAACCAAGTTCAATCATTCAA
Found at i:10675901 original size:18 final size:19
Alignment explanation
Indices: 10675864--10675901 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
10675854 TTCACACATA
*
10675864 TCAATCATGGAAACCAAGT
1 TCAATCATGCAAACCAAGT
*
10675883 TCAATCATTCAAA-CAAGT
1 TCAATCATGCAAACCAAGT
10675901 T
1 T
10675902 TAATATCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (19 bp):
TCAATCATGCAAACCAAGT
Found at i:10677081 original size:13 final size:13
Alignment explanation
Indices: 10677060--10677096 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
10677050 ATAACAAACA
10677060 ATATATAAAGAAC
1 ATATATAAAGAAC
*
10677073 ATATCTAAAGAAC
1 ATATATAAAGAAC
10677086 ATATATAAAGA
1 ATATATAAAGA
10677097 CATTGAGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.24
Consensus pattern (13 bp):
ATATATAAAGAAC
Found at i:10684352 original size:22 final size:23
Alignment explanation
Indices: 10684327--10684380 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
10684317 AAGACAAATT
* *
10684327 AATGAAATTGAAAAGGAAAT-AG
1 AATGAAATAGAAAAGGAAATAAA
* *
10684349 AATGAAAAAGAAATGGAAATAAA
1 AATGAAATAGAAAAGGAAATAAA
10684372 AATGAAATA
1 AATGAAATA
10684381 ATCAGGGTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.17
Consensus pattern (23 bp):
AATGAAATAGAAAAGGAAATAAA
Found at i:10687054 original size:16 final size:16
Alignment explanation
Indices: 10687035--10687065 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10687025 CAAAATGACT
10687035 AAAAAAAGAGAAAAAA
1 AAAAAAAGAGAAAAAA
*
10687051 AAAAAAGGAGAAAAA
1 AAAAAAAGAGAAAAA
10687066 GCTGAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAGAAAAAA
Found at i:10689626 original size:19 final size:20
Alignment explanation
Indices: 10689604--10689649 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
10689594 GCCAAAAGGG
10689604 AAAAAAAAT-AACTAAAGAA
1 AAAAAAAATAAACTAAAGAA
10689623 AAAAAAAATAAACTAAAGAA
1 AAAAAAAATAAACTAAAGAA
10689643 AGAAAAA
1 A-AAAAA
10689650 TGGATAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 9 0.36
20 11 0.44
21 5 0.20
ACGTcount: A:0.80, C:0.04, G:0.07, T:0.09
Consensus pattern (20 bp):
AAAAAAAATAAACTAAAGAA
Found at i:10689629 original size:20 final size:21
Alignment explanation
Indices: 10689603--10689649 Score: 71
Period size: 19 Copynumber: 2.3 Consensus size: 21
10689593 AGCCAAAAGG
10689603 GAAAAAAAAT-AACTAAAGAA
1 GAAAAAAAATAAACTAAAGAA
10689623 -AAAAAAAATAAACTAAAGAAA
1 GAAAAAAAATAAACTAAAG-AA
10689644 GAAAAA
1 GAAAAA
10689650 TGGATAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.38
20 8 0.33
21 2 0.08
22 5 0.21
ACGTcount: A:0.79, C:0.04, G:0.09, T:0.09
Consensus pattern (21 bp):
GAAAAAAAATAAACTAAAGAA
Found at i:10709729 original size:6 final size:6
Alignment explanation
Indices: 10709714--10709746 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
10709704 CCATGATATC
*
10709714 ATCATT ATCATA ATCATA ATCATA ATCATA ATC
1 ATCATA ATCATA ATCATA ATCATA ATCATA ATC
10709747 CACCCTATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (6 bp):
ATCATA
Found at i:10725924 original size:19 final size:19
Alignment explanation
Indices: 10725892--10725945 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
10725882 AACCCAAAAT
10725892 TAAAACCTTAAACCA-TTACC
1 TAAAACC-TAAACCACTT-CC
10725912 TAAAACCTAAACCACTTCC
1 TAAAACCTAAACCACTTCC
* *
10725931 CAAACCCTAAACCAC
1 TAAAACCTAAACCAC
10725946 CTTTCAAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 22 0.71
20 9 0.29
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (19 bp):
TAAAACCTAAACCACTTCC
Found at i:10725998 original size:18 final size:19
Alignment explanation
Indices: 10725917--10725991 Score: 80
Period size: 19 Copynumber: 3.9 Consensus size: 19
10725907 TTACCTAAAA
*
10725917 CCTAAACCA-CTTCCCAAAC
1 CCTAAACCACCTT-TCAAAC
*
10725936 CCTAAACCACCTTTCAAAT
1 CCTAAACCACCTTTCAAAC
* * * *
10725955 CCTTAATCATCTTCCAAAC
1 CCTAAACCACCTTTCAAAC
10725974 CCTAAACCACCTTTCAAA
1 CCTAAACCACCTTTCAAA
10725992 ACTAAACTAA
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
19 41 0.93
20 3 0.07
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (19 bp):
CCTAAACCACCTTTCAAAC
Found at i:10739380 original size:21 final size:21
Alignment explanation
Indices: 10739354--10739404 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
10739344 AAAAAAAAAC
10739354 AAAAAAAAAATGAGAGAGAAA
1 AAAAAAAAAATGAGAGAGAAA
* * * *
10739375 AAAAAAGAAATGTGAGCGAGA
1 AAAAAAAAAATGAGAGAGAAA
*
10739396 AAAGAAAAA
1 AAAAAAAAA
10739405 GATAGGTGAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.71, C:0.02, G:0.22, T:0.06
Consensus pattern (21 bp):
AAAAAAAAAATGAGAGAGAAA
Found at i:10739380 original size:23 final size:23
Alignment explanation
Indices: 10739348--10739404 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
10739338 CTAAGGAAAA
10739348 AAAAACAAAAAAAAAATGAGAGAG
1 AAAAA-AAAAAAAAAATGAGAGAG
* ** *
10739372 AAAAAAAAAGAAATGTGAGCGAG
1 AAAAAAAAAAAAAAATGAGAGAG
*
10739395 AAAAGAAAAA
1 AAAAAAAAAA
10739405 GATAGGTGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 22 0.81
24 5 0.19
ACGTcount: A:0.72, C:0.04, G:0.19, T:0.05
Consensus pattern (23 bp):
AAAAAAAAAAAAAAATGAGAGAG
Found at i:10739403 original size:26 final size:26
Alignment explanation
Indices: 10739374--10739458 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 26
10739364 TGAGAGAGAA
10739374 AAAAAAAGAAATGTGAGCGAGAAAAG
1 AAAAAAAGAAATGTGAGCGAGAAAAG
* *
10739400 --AAAAAGATAGGTGAGCGAGAAAAG
1 AAAAAAAGAAATGTGAGCGAGAAAAG
* * * *
10739424 AAGATAAAG-GATGAGGGCGAGAAAAGG
1 AA-AAAAAGAAATGTGAGCGAGAAAA-G
10739451 AAAAAAAG
1 AAAAAAAG
10739459 TGAAGACGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
24 22 0.47
26 17 0.36
27 8 0.17
ACGTcount: A:0.58, C:0.04, G:0.32, T:0.07
Consensus pattern (26 bp):
AAAAAAAGAAATGTGAGCGAGAAAAG
Found at i:10739438 original size:24 final size:24
Alignment explanation
Indices: 10739364--10739425 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
10739354 AAAAAAAAAA
* * *
10739364 TGAGAGAGAAAA-AAAAAGAAATG
1 TGAGCGAGAAAAGAAAAAGATAGG
10739387 TGAGCGAGAAAAGAAAAAGATAGG
1 TGAGCGAGAAAAGAAAAAGATAGG
10739411 TGAGCGAGAAAAGAA
1 TGAGCGAGAAAAGAA
10739426 GATAAAGGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 11 0.31
24 24 0.69
ACGTcount: A:0.58, C:0.03, G:0.31, T:0.08
Consensus pattern (24 bp):
TGAGCGAGAAAAGAAAAAGATAGG
Found at i:10742156 original size:232 final size:231
Alignment explanation
Indices: 10741863--10742530 Score: 729
Period size: 245 Copynumber: 2.8 Consensus size: 231
10741853 CATCTTATCT
* ** * *
10741863 CAATTTTAAAGTAATTTATCTTTTCCAATTTATTTGGAACTAACATGAGTATATAAATTTATCAC
1 CAATTTTAAAGTAATTTATCTTTT-CAATTTATTTGCAGTTAAAATGAGTATTTAAATTTATCAC
*
10741928 AACTTTAAAAAATATTATTTAATATCTTTAATATTTTTTATAAATAATCATTGCATTATTTTCAG
65 AACTTT-AAAAATATTATTTAATATCTTTAATATTTTTTATAAATAATC-TTACATTATTTTCAG
* *
10741993 CTTTTAAATATATTTTACAAAGGAAATGTGAAAAAAATATATAAATACTAGAACAACTTCA-TA-
128 CTTTTAAATATATTTCACAAA-GAAATATGAAAAAAATATATAAATACTAGAACAACTTCAGTAC
* * * *
10742056 A-ATGTTTCTCCTATACATTATCTCATGTCAATTTAAAAC
192 ACAAGTTTATCCTATACATCATCTCATCTCAATTTAAAAC
* * * *
10742095 CAATTTTAAGGTAATTTATCTTTTCTAATTTATCTGTAGTTAAAATAAGTATTTAAATTTATCAC
1 CAATTTTAAAGTAATTTATCTTTTC-AATTTATTTGCAGTTAAAATGAGTATTTAAATTTATCAC
* *
10742160 AAGCTTTAAAATTATTATTTAATATCTTT-A-ATTTTTTATAAATAATCCTTACATTATTTTTAG
65 AA-CTTTAAAAATATTATTTAATATCTTTAATATTTTTTATAAATAAT-CTTACATTATTTTCAG
* * *
10742223 TTTTTAAATATATTTCACAAAAAAATATGAAAAAAATATAAATACCAAAACAACTTTAGGAA-AG
128 CTTTTAAATATATTTCACAAAGAAATATGAAAAAAATAT--AT----AAA-TAC--TA-GAACA-
* ** * * *
10742287 TCTCTCATGTACATCAAGTTTATTTTGTATATCATCTTATCTCAATTTAAAAC
182 ACT-TCA-GTACA-CAAGTTTATCCTATACATCATCTCATCTCAATTTAAAAC
* * *
10742340 CAATTTTAAAGCAATTTATCATTTTCAATTTATTTGCAGTTAATATGAGTATTTAAATTTATCAT
1 CAATTTTAAAGTAATTTATC-TTTTCAATTTATTTGCAGTTAAAATGAGTATTTAAATTTATCAC
* * * *
10742405 AATTTTTAAAAATATTATTTAATATCTTTAATATTTTTTATAAAAAATTCTTACATTATCTTCAA
65 AA-CTTTAAAAATATTATTTAATATCTTTAATATTTTTTATAAATAA-TCTTACATTATTTTCAG
* * *
10742470 CTTTTAAATATATTTCACAAATGAAATAT-AAAAAAAAATATAAATACCATAACAACTTCAG
128 CTTTTAAATATATTTCACAAA-GAAATATGAAAAAAATATATAAATACTAGAACAACTTCAG
10742531 GAAAGCCCTC
Statistics
Matches: 363, Mismatches: 47, Indels: 49
0.79 0.10 0.11
Matches are distributed among these distances:
229 16 0.04
230 48 0.13
231 5 0.01
232 78 0.21
233 4 0.01
235 4 0.01
236 5 0.01
237 4 0.01
238 5 0.01
239 5 0.01
240 5 0.01
241 3 0.01
242 2 0.01
243 1 0.00
245 109 0.30
246 6 0.02
247 56 0.15
248 7 0.02
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (231 bp):
CAATTTTAAAGTAATTTATCTTTTCAATTTATTTGCAGTTAAAATGAGTATTTAAATTTATCACA
ACTTTAAAAATATTATTTAATATCTTTAATATTTTTTATAAATAATCTTACATTATTTTCAGCTT
TTAAATATATTTCACAAAGAAATATGAAAAAAATATATAAATACTAGAACAACTTCAGTACACAA
GTTTATCCTATACATCATCTCATCTCAATTTAAAAC
Found at i:10742762 original size:17 final size:17
Alignment explanation
Indices: 10742740--10742772 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10742730 TCAAATCAGT
*
10742740 TGTAATATTTTTTTAAC
1 TGTAATATCTTTTTAAC
10742757 TGTAATATCTTTTTAA
1 TGTAATATCTTTTTAA
10742773 AAAACTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (17 bp):
TGTAATATCTTTTTAAC
Found at i:10745345 original size:16 final size:16
Alignment explanation
Indices: 10745324--10745356 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10745314 TCACCAAAAG
10745324 TTATTATTTAGAAGAA
1 TTATTATTTAGAAGAA
*
10745340 TTATTATTTTGAAGAA
1 TTATTATTTAGAAGAA
10745356 T
1 T
10745357 GATGTATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (16 bp):
TTATTATTTAGAAGAA
Found at i:10750131 original size:3 final size:3
Alignment explanation
Indices: 10750123--10750158 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
10750113 CAAATACCAA
*
10750123 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10750159 GGTATTCTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10753578 original size:15 final size:16
Alignment explanation
Indices: 10753555--10753593 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
10753545 TCAGATTATA
*
10753555 TCGGTTTTGAA-CTTT
1 TCGGATTTGAATCTTT
*
10753570 TCGGATTTGAATTTTT
1 TCGGATTTGAATCTTT
10753586 TCGGATTT
1 TCGGATTT
10753594 AATTGTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.15, C:0.10, G:0.21, T:0.54
Consensus pattern (16 bp):
TCGGATTTGAATCTTT
Found at i:10753597 original size:15 final size:17
Alignment explanation
Indices: 10753567--10753602 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
10753557 GGTTTTGAAC
10753567 TTTTCGGATTTGAATT-
1 TTTTCGGATTTGAATTG
10753583 TTTTCGGATTT-AATTG
1 TTTTCGGATTTGAATTG
10753599 TTTT
1 TTTT
10753603 GGGTTTCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61
Consensus pattern (17 bp):
TTTTCGGATTTGAATTG
Found at i:10758310 original size:28 final size:26
Alignment explanation
Indices: 10758240--10758310 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 26
10758230 TTACTCAATA
* *
10758240 AAAATGAATAAAT-AATAAAAATTAGC
1 AAAAT-AATAAATAAATAAAAATAAAC
10758266 AAAATAATAAGAGTAAATAAAAATAAAC
1 AAAATAATAA-A-TAAATAAAAATAAAC
10758294 AAAATATCATAAATAAA
1 AAAATA--ATAAATAAA
10758311 ATAAGAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
25 5 0.13
26 6 0.16
27 1 0.03
28 21 0.55
29 1 0.03
30 4 0.11
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (26 bp):
AAAATAATAAATAAATAAAAATAAAC
Found at i:10758890 original size:51 final size:52
Alignment explanation
Indices: 10758834--10758980 Score: 174
Period size: 51 Copynumber: 2.8 Consensus size: 52
10758824 TTGATTTCTG
* * *
10758834 TTTTAATGAGAATTAATTCTGAAATCAAATCCCAAAAATCTCTCCTT-ATCA-
1 TTTTAATGAGAATTGATTCTGAAATTAAATCCTAAAAATCTCT-CTTAATCAT
* * * *
10758885 TTTTAATGTGAATTGATTCTGGAATTAAATCCTGACAATCTCT-TTACATCAT
1 TTTTAATGAGAATTGATTCTGAAATTAAATCCTAAAAATCTCTCTTA-ATCAT
**
10758937 TTTTAATGCCAATTGATTCTGAAATTAAATCCTAAAAATCTCTC
1 TTTTAATGAGAATTGATTCTGAAATTAAATCCTAAAAATCTCTC
10758981 AATTACGGTT
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
49 2 0.03
51 40 0.50
52 38 0.47
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (52 bp):
TTTTAATGAGAATTGATTCTGAAATTAAATCCTAAAAATCTCTCTTAATCAT
Found at i:10759682 original size:86 final size:85
Alignment explanation
Indices: 10759390--10759683 Score: 297
Period size: 86 Copynumber: 3.4 Consensus size: 85
10759380 ATGTTTTCAA
* * * *
10759390 ATTCATAAGAATGGAAGATTCGCAAGA-TTCTAAGTTTAGCATAAGTTCTAGATTCGTAAAGATT
1 ATTCACAAGAATGAAAAATTCGCAAGATTTC-AAGTTTCGCA-AAGTTCTAGATTCGTAAAGATT
* * *
10759454 TCAAGTTCGCAAGGAC-TTTAG
64 TTAGGTTCACAAGGACTTTTAG
* * * * * * *
10759475 ATGCACAAGAAAGAAAGATTTGCAAGATTTCAAGTTTCGTAAAGGTTCTATATTCGTAAAAATTT
1 ATTCACAAGAATGAAAAATTCGCAAGATTTCAAGTTTCGCAAA-GTTCTAGATTCGTAAAGATTT
* *
10759540 TAGATTCACAAGGAGTTTTAG
65 TAGGTTCACAAGGACTTTTAG
* * *** * *
10759561 ATTCGCAAGAATGAAAATTTTATAAGTTTTAAAGTTTCGCAAATGTTCTAGATTCAG-AAAGATT
1 ATTCACAAGAATGAAAAATTCGCAAGATTTCAAGTTTCGCAAA-GTTCTAGATTC-GTAAAGATT
*
10759625 TTTGGTTCACAAGGACTTTTAG
64 TTAGGTTCACAAGGACTTTTAG
*
10759647 ATTCACAAGAATGAAAAATTCGTAAGATTTCAAGTTT
1 ATTCACAAGAATGAAAAATTCGCAAGATTTCAAGTTT
10759684 TGTAGAGGTC
Statistics
Matches: 169, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
84 2 0.01
85 59 0.35
86 107 0.63
87 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (85 bp):
ATTCACAAGAATGAAAAATTCGCAAGATTTCAAGTTTCGCAAAGTTCTAGATTCGTAAAGATTTT
AGGTTCACAAGGACTTTTAG
Found at i:10759949 original size:56 final size:56
Alignment explanation
Indices: 10759811--10759949 Score: 147
Period size: 56 Copynumber: 2.5 Consensus size: 56
10759801 TGCAAGTTAG
* * *
10759811 AAAAGTGATCTGAACTAAGTCGAGAT-TGAACGATCGGGATGAAACCACAAGTCTGA
1 AAAAATGATCTG-ACTAAGTCGAGATCTGAACGACCGCGATGAAACCACAAGTCTGA
* * * * * * *
10759867 AAAAATAATCTGGACTGAGCCAAGATCT-AACGACCGCGATGGAACCATAAGTTTGA
1 AAAAATGATCT-GACTAAGTCGAGATCTGAACGACCGCGATGAAACCACAAGTCTGA
10759923 AAAAATGATCTAGACTAAGTCGAGATC
1 AAAAATGATCT-GACTAAGTCGAGATC
10759950 AAACATGTGA
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
56 64 0.97
57 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.20
Consensus pattern (56 bp):
AAAAATGATCTGACTAAGTCGAGATCTGAACGACCGCGATGAAACCACAAGTCTGA
Found at i:10764900 original size:17 final size:18
Alignment explanation
Indices: 10764878--10764918 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
10764868 ATAAGTTGCT
*
10764878 TAATAAAAATGAAT-AAA
1 TAATAAAAATCAATAAAA
*
10764895 TAATAAAAATCAGTAAAA
1 TAATAAAAATCAATAAAA
10764913 TAATAA
1 TAATAA
10764919 GAGTAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (18 bp):
TAATAAAAATCAATAAAA
Found at i:10765618 original size:52 final size:51
Alignment explanation
Indices: 10765475--10765618 Score: 132
Period size: 51 Copynumber: 2.8 Consensus size: 51
10765465 TTTGTTTCTG
* * *
10765475 TTTTAATGAGAATTGATTCT-GAAATCATATCCCAAAAATCTCTCCCTATAAT
1 TTTTAATG-TAATTGATTCTAG-AATTAAATCCCAAAAATCTCTCCCTATAAT
* * * ** * *
10765527 TTGT-ATGTGAATTGATTCTAGAATTAAGTTCTGACAATCTCTCCAC-ATCAT
1 TTTTAATGT-AATTGATTCTAGAATTAAATCCCAAAAATCTCTCC-CTATAAT
10765578 TTTTAATGCTAATTGATTCTAGAATTAAATCCCAAAAATCT
1 TTTTAATG-TAATTGATTCTAGAATTAAATCCCAAAAATCT
10765619 TTCAATTACG
Statistics
Matches: 71, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
51 36 0.51
52 34 0.48
53 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (51 bp):
TTTTAATGTAATTGATTCTAGAATTAAATCCCAAAAATCTCTCCCTATAAT
Found at i:10766536 original size:63 final size:64
Alignment explanation
Indices: 10766469--10766602 Score: 152
Period size: 63 Copynumber: 2.1 Consensus size: 64
10766459 CCCCATTAAT
* *
10766469 TTTTTTTGTA-AAGG-ATTATTCAAGGCATTTCTGGCTAAAAACGCATTAAATAATCCTCTTC-A
1 TTTTTTTGTACAAGGAATTATTCAAGACATTT-TAGCTAAAAACGCATTAAATAAT-CTCTTCAA
10766531 A
64 A
* * * *
10766532 -TTTTTT-TACTAGGTAATTATTCAAGACGTTTTAGCTAAAAACGCATTGAATAATCTTTTCAAA
1 TTTTTTTGTACAAGG-AATTATTCAAGACATTTTAGCTAAAAACGCATTAAATAATCTCTTCAAA
10766595 TTTTTTTG
1 TTTTTTTG
10766603 GTGATTATTC
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
61 2 0.03
62 14 0.24
63 23 0.39
64 20 0.34
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (64 bp):
TTTTTTTGTACAAGGAATTATTCAAGACATTTTAGCTAAAAACGCATTAAATAATCTCTTCAAA
Found at i:10766554 original size:64 final size:59
Alignment explanation
Indices: 10766483--10766622 Score: 163
Period size: 63 Copynumber: 2.3 Consensus size: 59
10766473 TTTGTAAAGG
* *
10766483 ATTATTCAAGGCATTTCTGGCTAAAAACGCATTAAATAATCCTCTTCAATTTTTTTACTAGGTA
1 ATTATTCAAGGCATTT-TAGCTAAAAACGCATTAAATAAT-CTCTTCAAATTTTTT--T-GGTA
* * * * *
10766547 ATTATTCAAGACGTTTTAGCTAAAAACGCATTGAATAATCTTTTCAAATTTTTTTGGTG
1 ATTATTCAAGGCATTTTAGCTAAAAACGCATTAAATAATCTCTTCAAATTTTTTTGGTA
*
10766606 ATTATTCAAGGCGTTTT
1 ATTATTCAAGGCATTTT
10766623 TGTCCAAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 19 0.28
60 1 0.01
62 13 0.19
63 21 0.31
64 14 0.21
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41
Consensus pattern (59 bp):
ATTATTCAAGGCATTTTAGCTAAAAACGCATTAAATAATCTCTTCAAATTTTTTTGGTA
Found at i:10767208 original size:84 final size:83
Alignment explanation
Indices: 10767067--10767224 Score: 253
Period size: 84 Copynumber: 1.9 Consensus size: 83
10767057 ATGATAACGA
*
10767067 CTATTTCATAAGTTTTTAATCAGGTTAAATTTAAAAATAACGTTATTTTTCCTTATGAAATTTTA
1 CTATTTCATAAGTTTTTAATCAGATTAAATTTAAAAATAACGTTATTTTTCCTTATG-AATTTTA
10767132 AAATATCACATAAGAGGTG
65 AAATATCACATAAGAGGTG
* ** * *
10767151 CTATTTCATAAGTTTTTAGTTTGATTAAATTTAGAAATAACGTTATTTTTCCTTATGAATTTTAG
1 CTATTTCATAAGTTTTTAATCAGATTAAATTTAAAAATAACGTTATTTTTCCTTATGAATTTTAA
10767216 AATATCACA
66 AATATCACA
10767225 GAAAGATATG
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 16 0.24
84 52 0.76
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.44
Consensus pattern (83 bp):
CTATTTCATAAGTTTTTAATCAGATTAAATTTAAAAATAACGTTATTTTTCCTTATGAATTTTAA
AATATCACATAAGAGGTG
Found at i:10768005 original size:15 final size:15
Alignment explanation
Indices: 10767977--10768063 Score: 77
Period size: 16 Copynumber: 5.7 Consensus size: 15
10767967 GGTCCTCTCG
*
10767977 ATTTCAAATAATTTGA
1 ATTT-AAATTATTTGA
*
10767993 ATTTAAATTATTTAA
1 ATTTAAATTATTTGA
10768008 ATTTGAAATTATTTGA
1 ATTT-AAATTATTTGA
* *
10768024 ATTAAAATTATTTTAA
1 ATTTAAATTA-TTTGA
* *
10768040 ATTAAAATTA-TAGA
1 ATTTAAATTATTTGA
*
10768054 TTTTAAATTA
1 ATTTAAATTA
10768064 AATTAAATTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
14 10 0.17
15 19 0.32
16 31 0.52
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (15 bp):
ATTTAAATTATTTGA
Found at i:10768022 original size:31 final size:31
Alignment explanation
Indices: 10767977--10768072 Score: 97
Period size: 31 Copynumber: 3.1 Consensus size: 31
10767967 GGTCCTCTCG
* *
10767977 ATTTCAAATAATTTGAATTTAAATTATTTAA
1 ATTTAAAATTATTTGAATTTAAATTATTTAA
* *
10768008 ATTTGAAATTATTTGAATTAAAATTATTTTAA
1 ATTTAAAATTATTTGAATTTAAATTA-TTTAA
* * *
10768040 A-TTAAAATTA-TAGATTTTAAATTAAATTAA
1 ATTTAAAATTATTTGAATTTAAATT-ATTTAA
10768070 ATT
1 ATT
10768073 AAATCGTTAA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
30 15 0.28
31 33 0.61
32 6 0.11
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (31 bp):
ATTTAAAATTATTTGAATTTAAATTATTTAA
Found at i:10768647 original size:19 final size:19
Alignment explanation
Indices: 10768625--10768661 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10768615 TATATAATAA
**
10768625 ATTAATAACTTAATAAATT
1 ATTAATAAAATAATAAATT
10768644 ATTAATAAAATAATAAAT
1 ATTAATAAAATAATAAAT
10768662 AAATTTTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAATAAAATAATAAATT
Found at i:10768695 original size:19 final size:21
Alignment explanation
Indices: 10768671--10768709 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10768661 TAAATTTTAC
*
10768671 TTATTT-AT-TAATAAAATTA
1 TTATTTGATATAAAAAAATTA
10768690 TTATTTGATATAAAAAAATT
1 TTATTTGATATAAAAAAATT
10768710 TTAATAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 2 0.12
21 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (21 bp):
TTATTTGATATAAAAAAATTA
Found at i:10768733 original size:21 final size:22
Alignment explanation
Indices: 10768698--10768746 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
10768688 TATTATTTGA
10768698 TATAAAAAAATTTTAATAACTTT
1 TATAAAAAAATTTTAATAA-TTT
* *
10768721 T-TAAAATAA-TTTATTAATTT
1 TATAAAAAAATTTTAATAATTT
10768741 TATAAA
1 TATAAA
10768747 TATTAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.17
21 11 0.48
22 7 0.30
23 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TATAAAAAAATTTTAATAATTT
Found at i:10769753 original size:13 final size:13
Alignment explanation
Indices: 10769735--10769769 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
10769725 GCTGAATAGA
10769735 TTAATTAAGCAAG
1 TTAATTAAGCAAG
*
10769748 TTAATTAATCAAG
1 TTAATTAAGCAAG
10769761 TTAAGTTAA
1 TTAA-TTAA
10769770 TGGATAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (13 bp):
TTAATTAAGCAAG
Found at i:10771245 original size:20 final size:20
Alignment explanation
Indices: 10771220--10771288 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 20
10771210 GTGGACTTTA
10771220 GTTATCAAATGTATAATTAT
1 GTTATCAAATGTATAATTAT
* *
10771240 GTTATCAAATTGAATTGAATCTTT
1 GTTATCAAA-TGTA-T-AAT-TAT
*
10771264 AATTATCAAATGTATAATTAT
1 -GTTATCAAATGTATAATTAT
10771285 GTTA
1 GTTA
10771289 ATTAAAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
20 12 0.32
21 5 0.13
22 4 0.11
23 4 0.11
24 5 0.13
25 8 0.21
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (20 bp):
GTTATCAAATGTATAATTAT
Found at i:10772141 original size:19 final size:20
Alignment explanation
Indices: 10772117--10772155 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
10772107 TTATATTAAA
* *
10772117 TTTAAA-AAATTTCAAAATT
1 TTTAAATAAAATTAAAAATT
10772136 TTTAAATAAAATTAAAAATT
1 TTTAAATAAAATTAAAAATT
10772156 AAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTAAATAAAATTAAAAATT
Found at i:10778744 original size:26 final size:26
Alignment explanation
Indices: 10778704--10778762 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 26
10778694 GGGTTTTATC
** * *
10778704 TTTTTTTTTTTAATTCCACGTGTTTA
1 TTTTTTTTTAAAATTCCACATATTTA
*
10778730 TTTTTTTTTAAAATTTCACATATTTA
1 TTTTTTTTTAAAATTCCACATATTTA
*
10778756 ATTTTTT
1 TTTTTTT
10778763 AAAGGTTACG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.22, C:0.08, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTTTTTTTAAAATTCCACATATTTA
Found at i:10779047 original size:3 final size:3
Alignment explanation
Indices: 10779039--10779078 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
10779029 CTTTGCTATG
10779039 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10779079 ACAAAAGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10779196 original size:15 final size:17
Alignment explanation
Indices: 10779176--10779212 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
10779166 TAATAGTTAT
10779176 AATGA-TCTTAA-ATAA
1 AATGATTCTTAATATAA
*
10779191 AATGATTTTTAATATAA
1 AATGATTCTTAATATAA
10779208 AATGA
1 AATGA
10779213 ATATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 5 0.26
17 9 0.47
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (17 bp):
AATGATTCTTAATATAA
Found at i:10781917 original size:33 final size:33
Alignment explanation
Indices: 10781876--10781964 Score: 94
Period size: 32 Copynumber: 2.8 Consensus size: 33
10781866 AAAAAGAAAA
10781876 ATTA-TTATAATAGGATAAGGTCC-ATTTGCTTT
1 ATTACTTATAATAGGATAAGG-CCTATTTGCTTT
** * *
10781908 ATTTTTTATAAT-GGACAATGCCTATTTGCTTT
1 ATTACTTATAATAGGATAAGGCCTATTTGCTTT
* *
10781940 ATTACTTATAACAGGATAAAGCCTA
1 ATTACTTATAATAGGATAAGGCCTA
10781965 ATTTTTTCTT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
31 2 0.04
32 27 0.59
33 17 0.37
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (33 bp):
ATTACTTATAATAGGATAAGGCCTATTTGCTTT
Found at i:10784158 original size:162 final size:162
Alignment explanation
Indices: 10783971--10784296 Score: 535
Period size: 162 Copynumber: 2.0 Consensus size: 162
10783961 TTTTTTAATG
* *
10783971 ATCTTTAAGATTTTTGCAATAAAAGTACATTTTCACTCATTTACTAGCTTAAATCTACTTGTTTT
1 ATCTTTAAGATTCTTGCAATAAAAGTACATTTTCACTCATTTACTAGCTCAAATCTACTTGTTTT
* * *
10784036 CATGTTGATGTTTAAACTGTTTTGAATCTATTTTCTTTTATATAGCTATGGTTTTTAGATTAAAA
66 CATGTTGATGTTCAAACTGTTTTGAATCTATTTTCTCTTATATAGCTATGATTTTTAGATTAAAA
10784101 ATCTATCAAATCTAGATTGTTATTATTCAAGT
131 ATCTATCAAATCTAGATTGTTATTATTCAAGT
*
10784133 ATCTTTATGATTCTTGCAATAAAAGTACATTTTCACTCATTTACTAGCTCAAATCTACTTGTTTT
1 ATCTTTAAGATTCTTGCAATAAAAGTACATTTTCACTCATTTACTAGCTCAAATCTACTTGTTTT
* * ** *
10784198 CATGTTGATGTTCAAAGTGTTTTGAATCTGTTTTCTCTTATATAGCTATGATTTTTTTATTGAAA
66 CATGTTGATGTTCAAACTGTTTTGAATCTATTTTCTCTTATATAGCTATGATTTTTAGATTAAAA
* *
10784263 CTCTATCAAATCTAGATTGTTTTTATTCAAGT
131 ATCTATCAAATCTAGATTGTTATTATTCAAGT
10784295 AT
1 AT
10784297 TTTTCATAGA
Statistics
Matches: 151, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
162 151 1.00
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.48
Consensus pattern (162 bp):
ATCTTTAAGATTCTTGCAATAAAAGTACATTTTCACTCATTTACTAGCTCAAATCTACTTGTTTT
CATGTTGATGTTCAAACTGTTTTGAATCTATTTTCTCTTATATAGCTATGATTTTTAGATTAAAA
ATCTATCAAATCTAGATTGTTATTATTCAAGT
Done.