Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 84 of 121
Found at i:14260309 original size:5 final size:5
Alignment explanation
Indices: 14260301--14260329 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
14260291 ATTAAATTTC
14260301 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
14260330 CCTTACTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:14261467 original size:27 final size:26
Alignment explanation
Indices: 14261437--14261515 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 26
14261427 TATATAAAAT
14261437 TAATAAAAAATAGTAATTTATAATTTA
1 TAATAAAAAATA-TAATTTATAATTTA
* **
14261464 TAATTAAAAATTATTTTTTATTAATTTTA
1 TAA-TAAAAAATATAATTTA-TAA-TTTA
14261493 TAATAAAAAATAATAATTT-TAAT
1 TAATAAAAAAT-ATAATTTATAAT
14261516 AATATGAAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
26 1 0.02
27 11 0.26
28 18 0.43
29 12 0.29
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (26 bp):
TAATAAAAAATATAATTTATAATTTA
Found at i:14261471 original size:28 final size:26
Alignment explanation
Indices: 14261456--14261515 Score: 50
Period size: 29 Copynumber: 2.2 Consensus size: 26
14261446 ATAGTAATTT
* **
14261456 ATAATTTATAATTAAAAATTATTTTTT
1 ATAATTTATAA-TAAAAAATATAATTT
14261483 ATTAATTTTATAATAAAAAATAATAATTT
1 A-TAA-TTTATAATAAAAAAT-ATAATTT
14261512 -TAAT
1 ATAAT
14261516 AATATGAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
26 1 0.04
27 4 0.15
28 10 0.37
29 12 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
ATAATTTATAATAAAAAATATAATTT
Found at i:14261819 original size:33 final size:33
Alignment explanation
Indices: 14261754--14261845 Score: 94
Period size: 33 Copynumber: 2.8 Consensus size: 33
14261744 TGGACGGTGT
* * *
14261754 CAGTTAAATTAGGCTTAAATCTCATCTAGATGC
1 CAGTTAAATTGGGCTTGAATCTTATCTAGATGC
* *
14261787 CAGTTAAATTGGGCTTGAATCTTATTTGGATGC
1 CAGTTAAATTGGGCTTGAATCTTATCTAGATGC
** ** *
14261820 CAACTAAACCGAGCTTGAATCTTATC
1 CAGTTAAATTGGGCTTGAATCTTATC
14261846 CAAGTGCCAG
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (33 bp):
CAGTTAAATTGGGCTTGAATCTTATCTAGATGC
Found at i:14262304 original size:10 final size:10
Alignment explanation
Indices: 14262281--14262337 Score: 53
Period size: 10 Copynumber: 5.8 Consensus size: 10
14262271 CATGATATAT
* *
14262281 TTTTTGTCTA
1 TTTTTTTCTT
14262291 TTTTTTT-TT
1 TTTTTTTCTT
* *
14262300 CTTTTTCCTT
1 TTTTTTTCTT
14262310 TTTTTTTCTT
1 TTTTTTTCTT
* *
14262320 TTTTTCTCTA
1 TTTTTTTCTT
14262330 TTTTTTTC
1 TTTTTTTC
14262338 AAACTCTTTC
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
9 6 0.16
10 31 0.84
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.81
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:14263246 original size:21 final size:21
Alignment explanation
Indices: 14263220--14263268 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
14263210 TGATGATATA
14263220 TTTTTTTGTCTCTTTTTGT-T
1 TTTTTTTGTCTCTTTTTGTCT
* *
14263240 TTCTTTTTGTTTGTTTTTGTCT
1 TT-TTTTTGTCTCTTTTTGTCT
14263262 TTTTTTT
1 TTTTTTT
14263269 CAAATGCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 20 0.80
22 3 0.12
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.82
Consensus pattern (21 bp):
TTTTTTTGTCTCTTTTTGTCT
Found at i:14263267 original size:10 final size:10
Alignment explanation
Indices: 14263220--14263267 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
14263210 TGATGATATA
14263220 TTTTTTTGTC
1 TTTTTTTGTC
* *
14263230 TCTTTTTGTT
1 TTTTTTTGTC
14263240 TTCTTTTTGT-
1 TT-TTTTTGTC
14263250 TTGTTTTTGTC
1 TT-TTTTTGTC
14263261 TTTTTTT
1 TTTTTTT
14263268 TCAAATGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 23 0.72
11 9 0.28
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.81
Consensus pattern (10 bp):
TTTTTTTGTC
Found at i:14264837 original size:10 final size:10
Alignment explanation
Indices: 14264817--14264859 Score: 56
Period size: 9 Copynumber: 4.6 Consensus size: 10
14264807 GCCATATTTA
14264817 TCTTT-TTTT
1 TCTTTCTTTT
14264826 TCTTTCTTTT
1 TCTTTCTTTT
*
14264836 TCTTCCTTTT
1 TCTTTCTTTT
14264846 T-TTTCTTTT
1 TCTTTCTTTT
14264855 T-TTTC
1 TCTTTC
14264860 ATTCTTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 17 0.55
10 14 0.45
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
TCTTTCTTTT
Found at i:14264844 original size:23 final size:22
Alignment explanation
Indices: 14264817--14264867 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
14264807 GCCATATTTA
14264817 TCTTTTTTTTCTTTCTTTTTC-T
1 TCTTTTTTTTCTTT-TTTTTCAT
14264839 TCCTTTTTTTTCTTTTTTTTCAT
1 T-CTTTTTTTTCTTTTTTTTCAT
14264862 TCTTTT
1 TCTTTT
14264868 CAATCATTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (22 bp):
TCTTTTTTTTCTTTTTTTTCAT
Found at i:14265648 original size:15 final size:15
Alignment explanation
Indices: 14265609--14265648 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
14265599 AATTGTCTTC
14265609 TTTTTTCTTTTGGGT
1 TTTTTTCTTTTGGGT
* * *
14265624 TTTCTACTTTTTGGT
1 TTTTTTCTTTTGGGT
14265639 TTTTTTCTTT
1 TTTTTTCTTT
14265649 CATTTTGGGC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.03, C:0.10, G:0.12, T:0.75
Consensus pattern (15 bp):
TTTTTTCTTTTGGGT
Found at i:14265795 original size:11 final size:10
Alignment explanation
Indices: 14265779--14265824 Score: 51
Period size: 11 Copynumber: 4.5 Consensus size: 10
14265769 TTCTTTATTT
14265779 TTTTTCTTTG
1 TTTTTCTTTG
14265789 CTTTTTCTTTG
1 -TTTTTCTTTG
14265800 TTTTTCCTCTT-
1 TTTTT-CT-TTG
14265811 TTTTTCTTT-
1 TTTTTCTTTG
14265820 TTTTT
1 TTTTT
14265825 TTGCATGCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 7 0.21
10 7 0.21
11 17 0.52
12 2 0.06
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.80
Consensus pattern (10 bp):
TTTTTCTTTG
Found at i:14265821 original size:9 final size:9
Alignment explanation
Indices: 14265758--14265824 Score: 55
Period size: 9 Copynumber: 7.0 Consensus size: 9
14265748 CAATCAAAAA
*
14265758 CTTTCTTTT
1 CTTTTTTTT
*
14265767 C-TTTCTTT
1 CTTTTTTTT
*
14265775 ATTTTTTTT
1 CTTTTTTTT
14265784 CTTTGCTTTTT
1 CTTT--TTTTT
14265795 CTTTGTTTTT
1 CTTT-TTTTT
14265805 CCTCTTTTTTT
1 -CT-TTTTTTT
14265816 CTTTTTTTT
1 CTTTTTTTT
14265825 TTGCATGCCC
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
8 5 0.11
9 17 0.36
10 7 0.15
11 16 0.34
12 2 0.04
ACGTcount: A:0.01, C:0.16, G:0.03, T:0.79
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:14267973 original size:5 final size:5
Alignment explanation
Indices: 14267963--14267991 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
14267953 TATATTGTGA
14267963 AAAAT AAAAT AAAA- AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
14267992 GAACTAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:14267981 original size:14 final size:14
Alignment explanation
Indices: 14267962--14267990 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14267952 CTATATTGTG
14267962 AAAAATAAAATAAA
1 AAAAATAAAATAAA
14267976 AAAAATAAAATAAA
1 AAAAATAAAATAAA
14267990 A
1 A
14267991 TGAACTAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAATAAAATAAA
Found at i:14274211 original size:13 final size:15
Alignment explanation
Indices: 14274187--14274218 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14274177 TTAAGAAAGA
14274187 ATTTTTGCAAAATG-
1 ATTTTTGCAAAATGT
14274201 ATTTTTG-AAAATGT
1 ATTTTTGCAAAATGT
14274215 ATTT
1 ATTT
14274219 CAAAACCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.34, C:0.03, G:0.12, T:0.50
Consensus pattern (15 bp):
ATTTTTGCAAAATGT
Found at i:14275734 original size:13 final size:13
Alignment explanation
Indices: 14275716--14275744 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14275706 CATTAATTTT
14275716 ATAAGAAACTAAG
1 ATAAGAAACTAAG
14275729 ATAAGAAACTAAG
1 ATAAGAAACTAAG
14275742 ATA
1 ATA
14275745 TAATATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.07, G:0.14, T:0.17
Consensus pattern (13 bp):
ATAAGAAACTAAG
Found at i:14276371 original size:21 final size:20
Alignment explanation
Indices: 14276349--14276387 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14276339 AATTCTATCA
14276349 AAAGATAAAAACAATAAAAC
1 AAAGATAAAAACAATAAAAC
* *
14276369 AAAGGTTAAAACAATAAAA
1 AAAGATAAAAACAATAAAA
14276388 TATTTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.13
Consensus pattern (20 bp):
AAAGATAAAAACAATAAAAC
Found at i:14276422 original size:18 final size:18
Alignment explanation
Indices: 14276399--14276433 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14276389 ATTTAAATTG
14276399 AAGATTGAAAA-AAATAAA
1 AAGATT-AAAATAAATAAA
14276417 AAGATTAAAATAAATAA
1 AAGATTAAAATAAATAA
14276434 GATTAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (18 bp):
AAGATTAAAATAAATAAA
Found at i:14276428 original size:14 final size:15
Alignment explanation
Indices: 14276409--14276442 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
14276399 AAGATTGAAA
14276409 AAAATAAA-AAGATT
1 AAAATAAATAAGATT
14276423 AAAATAAATAAGATT
1 AAAATAAATAAGATT
14276438 AAAAT
1 AAAAT
14276443 TTTAATAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (15 bp):
AAAATAAATAAGATT
Found at i:14280343 original size:54 final size:54
Alignment explanation
Indices: 14280237--14280343 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
14280227 CAAGAATTTT
* * **
14280237 GCCAACTTAAAGTTTAATGTTTTGCCATTTGTCTTTTAATTAGTTTTGTGTTTG
1 GCCAACTTAAAGTTTAATGTTATGCCATTTGTCTCTTAATTAGTCCTGTGTTTG
*
14280291 GCCAACTTAAAGTTTAATGTTATGCCATTTGTCTCTTGATTAGATCCT-TGTTT
1 GCCAACTTAAAGTTTAATGTTATGCCATTTGTCTCTTAATTAG-TCCTGTGTTT
14280344 AATTATGTGC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 45 0.96
55 2 0.04
ACGTcount: A:0.21, C:0.14, G:0.16, T:0.49
Consensus pattern (54 bp):
GCCAACTTAAAGTTTAATGTTATGCCATTTGTCTCTTAATTAGTCCTGTGTTTG
Found at i:14280863 original size:15 final size:15
Alignment explanation
Indices: 14280843--14280877 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
14280833 CATAATTAAA
14280843 AATAAT-TATAAAATT
1 AATAATATAT-AAATT
14280858 AATAATATATAAATT
1 AATAATATATAAATT
14280873 AATAA
1 AATAA
14280878 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 16 0.84
16 3 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATAATATATAAATT
Found at i:14281198 original size:23 final size:23
Alignment explanation
Indices: 14281172--14281241 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 23
14281162 ACTTATTTTC
14281172 TATTATATTTATTAAAATAT-AAA
1 TATTAT-TTTATTAAAATATAAAA
14281195 TATTATTTCTAACTATTAAAATATAAAA
1 TATTA-TT-T---TATTAAAATATAAAA
* *
14281223 TATGATTTTAATAAAATAT
1 TATTATTTTATTAAAATAT
14281242 TATGAATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
23 16 0.41
24 2 0.05
26 1 0.03
27 13 0.33
28 7 0.18
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (23 bp):
TATTATTTTATTAAAATATAAAA
Found at i:14281725 original size:23 final size:21
Alignment explanation
Indices: 14281683--14281722 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14281673 AAAAAAATTT
*
14281683 GAAAAAAATAAAAGTGATAAA
1 GAAAAAAATAAAAATGATAAA
14281704 GAAAAAAATAAAAATGATA
1 GAAAAAAATAAAAATGATA
14281723 TAATTGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.15
Consensus pattern (21 bp):
GAAAAAAATAAAAATGATAAA
Found at i:14282165 original size:62 final size:61
Alignment explanation
Indices: 14282075--14282199 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 61
14282065 AAAAGTATCA
*
14282075 AATTATATAATATTATAAATAATTTTAAAATTTA-TTTCAAT-ATTTACATATGATAAATAC
1 AATTATATAATAATATAAATAATTTTAAAATTTATTTTCAATAATTT-CATATGATAAATAC
* *
14282135 AATTATATAATCTAATATAAATAATTTTAAAATTTATTTTCAGTAATTTTATATGATAAATAC
1 AATTATATAA--TAATATAAATAATTTTAAAATTTATTTTCAATAATTTCATATGATAAATAC
14282198 AA
1 AA
14282200 CATAATATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
60 10 0.17
62 23 0.40
63 21 0.36
64 4 0.07
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (61 bp):
AATTATATAATAATATAAATAATTTTAAAATTTATTTTCAATAATTTCATATGATAAATAC
Found at i:14286553 original size:12 final size:13
Alignment explanation
Indices: 14286531--14286606 Score: 52
Period size: 12 Copynumber: 5.9 Consensus size: 13
14286521 AAGTATTATG
14286531 TTAATATAATTAA
1 TTAATATAATTAA
14286544 TTAA-ATAATTAA
1 TTAATATAATTAA
* * *
14286556 TTATTCTATTATAA
1 TTAATATAAT-TAA
* *
14286570 TAAAGTTATAA-TCA
1 TTAA--TATAATTAA
14286584 TTAA-ATAATTAA
1 TTAATATAATTAA
14286596 TTAATA-AATTA
1 TTAATATAATTA
14286607 TAGTATAACT
Statistics
Matches: 47, Mismatches: 10, Indels: 13
0.67 0.14 0.19
Matches are distributed among these distances:
11 4 0.09
12 22 0.47
13 8 0.17
14 10 0.21
16 3 0.06
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (13 bp):
TTAATATAATTAA
Found at i:14287306 original size:23 final size:23
Alignment explanation
Indices: 14287276--14287329 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
14287266 CATTACATAT
* *
14287276 TTAATTAAT-TTTATTTACTATGA
1 TTAATTAATATTAATTTA-TATCA
*
14287299 TTAATTAATATTAATTTATTTCA
1 TTAATTAATATTAATTTATATCA
14287322 TTAATTAA
1 TTAATTAA
14287330 ATAATATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (23 bp):
TTAATTAATATTAATTTATATCA
Found at i:14287313 original size:10 final size:10
Alignment explanation
Indices: 14287298--14287390 Score: 50
Period size: 10 Copynumber: 9.0 Consensus size: 10
14287288 ATTTACTATG
14287298 ATTAATTAAT
1 ATTAATTAAT
*
14287308 ATTAATTTAT
1 ATTAATTAAT
*
14287318 -TTCATT-A-
1 ATTAATTAAT
*
14287325 ATTAAATAAT
1 ATTAATTAAT
14287335 ATTAATTCAAAT
1 ATTAATT--AAT
*
14287347 ATTTAATTCAAA
1 A-TTAATT-AAT
*
14287359 AGTTAATTAAA
1 A-TTAATTAAT
14287370 ATTAATTTAAT
1 ATTAA-TTAAT
14287381 -TTAATGTAAT
1 ATTAAT-TAAT
14287391 TAAATAATTA
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
8 5 0.08
9 7 0.11
10 27 0.41
11 8 0.12
12 13 0.20
13 6 0.09
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (10 bp):
ATTAATTAAT
Found at i:14287349 original size:12 final size:12
Alignment explanation
Indices: 14287336--14287376 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 12
14287326 TTAAATAATA
*
14287336 TTAATTCAAATAT
1 TTAATTCAAA-AG
14287349 TTAATTCAAAAG
1 TTAATTCAAAAG
14287361 TTAATT-AAAA-
1 TTAATTCAAAAG
14287371 TTAATT
1 TTAATT
14287377 TAATTTAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 6 0.22
11 4 0.15
12 7 0.26
13 10 0.37
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (12 bp):
TTAATTCAAAAG
Found at i:14287561 original size:47 final size:47
Alignment explanation
Indices: 14287471--14287566 Score: 113
Period size: 47 Copynumber: 2.0 Consensus size: 47
14287461 ATTTAATTAT
* *
14287471 ATTAAATTAAAATTAAATTAATACACAAATTAATTAAATATATTTAA
1 ATTAAATTAAAACTAAATTAATACACAAATTAATTAAATATATTAAA
* * * * *
14287518 ATTATATTAAAACTAATTTAATAC-TATATTCATTAAATAATATTAAA
1 ATTAAATTAAAACTAAATTAATACACAAATTAATTAAAT-ATATTAAA
14287565 AT
1 AT
14287567 ATTAATATAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 11 0.27
47 30 0.73
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (47 bp):
ATTAAATTAAAACTAAATTAATACACAAATTAATTAAATATATTAAA
Found at i:14287806 original size:29 final size:29
Alignment explanation
Indices: 14287740--14287923 Score: 128
Period size: 29 Copynumber: 6.4 Consensus size: 29
14287730 AATAACACAC
* * * *
14287740 AAATATGATTAAAATAATATTATATAAT-
1 AAATATTATTAAATTAATATTAAATATTA
* * *
14287768 AAATATTATTGAATTAGTATTTAATATTA
1 AAATATTATTAAATTAATATTAAATATTA
* * *
14287797 AAATAATATT-TATATAATATAAAAATACTT-
1 AAATATTATTAAAT-TAATAT-TAAATA-TTA
*
14287827 AAA-ATGATTAAATTAATA-TATAATATTA
1 AAATATTATTAAATTAATATTA-AATATTA
* * *
14287855 AACAT-TTGTTAAAATAATATTCAATATTA
1 AA-ATATTATTAAATTAATATTAAATATTA
* *
14287884 AAATATTATTGAACTAATATTAAATATTA
1 AAATATTATTAAATTAATATTAAATATTA
*
14287913 AAATAATATTA
1 AAATATTATTA
14287924 TATGCTAAAA
Statistics
Matches: 119, Mismatches: 26, Indels: 21
0.72 0.16 0.13
Matches are distributed among these distances:
27 3 0.03
28 31 0.26
29 73 0.61
30 10 0.08
31 2 0.02
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (29 bp):
AAATATTATTAAATTAATATTAAATATTA
Found at i:14288303 original size:29 final size:29
Alignment explanation
Indices: 14288250--14288329 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
14288240 TATTGCAAAA
* *
14288250 ATAATATTAAAACATTAAAATATTATTAAC
1 ATAATATTTAATC-TTAAAATATTATTAAC
**
14288280 ATAATATTTAATCTTAAAATATTATTAGT
1 ATAATATTTAATCTTAAAATATTATTAAC
* *
14288309 ATAATATTTGATATTAAAATA
1 ATAATATTTAATCTTAAAATA
14288330 ATAGTAAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 33 0.75
30 11 0.25
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (29 bp):
ATAATATTTAATCTTAAAATATTATTAAC
Found at i:14288446 original size:10 final size:10
Alignment explanation
Indices: 14288375--14288447 Score: 56
Period size: 10 Copynumber: 7.2 Consensus size: 10
14288365 TTATATAAAT
14288375 TTTAATAATA
1 TTTAATAATA
* *
14288385 TTCAAGAATA
1 TTTAATAATA
**
14288395 TTTAATTTTA
1 TTTAATAATA
*
14288405 TTAAATAATA
1 TTTAATAATA
* * *
14288415 TTTATTATTG
1 TTTAATAATA
*
14288425 TTGTATTAATA
1 TT-TAATAATA
14288436 TTTAATAATA
1 TTTAATAATA
14288446 TT
1 TT
14288448 AAATTACTAT
Statistics
Matches: 46, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
10 38 0.83
11 8 0.17
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.53
Consensus pattern (10 bp):
TTTAATAATA
Found at i:14288453 original size:21 final size:21
Alignment explanation
Indices: 14288342--14288491 Score: 99
Period size: 21 Copynumber: 7.2 Consensus size: 21
14288332 AGTAAGTTAG
** *
14288342 TATTAAATTCTTATTCAATAT
1 TATTAAATTAATATTTAATAT
* * *
14288363 TATTATATAAAT-TTTAATAA
1 TATTAAATTAATATTTAATAT
* * *
14288383 TATTCAA-GAATATTTAATTT
1 TATTAAATTAATATTTAATAT
*
14288403 TATTAAA-TAATATTTATTAT
1 TATTAAATTAATATTTAATAT
* ** *
14288423 TGTTGTATTAATATTTAATAA
1 TATTAAATTAATATTTAATAT
* * *
14288444 TATTAAATTACTATCTAGTAT
1 TATTAAATTAATATTTAATAT
* *
14288465 TATTATATGAATATTTAATAAT
1 TATTAAATTAATATTTAAT-AT
14288487 TATTA
1 TATTA
14288492 TTTAACGTTA
Statistics
Matches: 94, Mismatches: 32, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
19 3 0.03
20 37 0.39
21 47 0.50
22 7 0.07
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51
Consensus pattern (21 bp):
TATTAAATTAATATTTAATAT
Found at i:14288482 original size:42 final size:41
Alignment explanation
Indices: 14288390--14288491 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 41
14288380 TAATATTCAA
** * * * *
14288390 GAATATTTAATTTTATTAAATAATATTTATTATTGTTGTAT
1 GAATATTTAATAATATTAAATAATATCTAGTATTATTATAT
* *
14288431 TAATATTTAATAATATTAAATTACTATCTAGTATTATTATAT
1 GAATATTTAATAATATTAAA-TAATATCTAGTATTATTATAT
14288473 GAATATTTAATAATTATTA
1 GAATATTTAATAA-TATTA
14288492 TTTAACGTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 17 0.34
42 28 0.56
43 5 0.10
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (41 bp):
GAATATTTAATAATATTAAATAATATCTAGTATTATTATAT
Found at i:14288721 original size:31 final size:30
Alignment explanation
Indices: 14288672--14288739 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 30
14288662 TGTTAGGGAT
* * * *
14288672 TTATTTAGGTGCATATTAAAAATTTAAGACC
1 TTATTTAGATACAAATTAAAAATTAAAGA-C
* *
14288703 TTATTTAGATACAAATTAAAGATTAAAGAT
1 TTATTTAGATACAAATTAAAAATTAAAGAC
14288733 TTATTTA
1 TTATTTA
14288740 AATGTAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (30 bp):
TTATTTAGATACAAATTAAAAATTAAAGAC
Found at i:14288739 original size:30 final size:31
Alignment explanation
Indices: 14288671--14288769 Score: 94
Period size: 30 Copynumber: 3.3 Consensus size: 31
14288661 ATGTTAGGGA
* * * *
14288671 TTTATTTAGGTGCATATTAAAAATTTAAGAC
1 TTTATTTAGATGCAAATTAAAGATTAAAGAC
* *
14288702 CTTATTTAGATACAAATTAAAGATTAAAGA-
1 TTTATTTAGATGCAAATTAAAGATTAAAGAC
* * * *
14288732 TTTATTTAAATGTAAAATAAAGATTAAA-AG
1 TTTATTTAGATGCAAATTAAAGATTAAAGAC
14288762 TTTATTTA
1 TTTATTTA
14288770 AATGTAAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
29 1 0.02
30 31 0.55
31 24 0.43
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.40
Consensus pattern (31 bp):
TTTATTTAGATGCAAATTAAAGATTAAAGAC
Found at i:14288770 original size:30 final size:30
Alignment explanation
Indices: 14288719--14288778 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
14288709 AGATACAAAT
14288719 TAAAGATTAAAGATTTATTTAAATGTAAAA
1 TAAAGATTAAAGATTTATTTAAATGTAAAA
14288749 TAAAGATTAAA-AGTTTATTTAAATGTAAAA
1 TAAAGATTAAAGA-TTTATTTAAATGTAAAA
14288779 AAATATAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 1 0.03
30 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (30 bp):
TAAAGATTAAAGATTTATTTAAATGTAAAA
Found at i:14289884 original size:31 final size:30
Alignment explanation
Indices: 14289827--14289884 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
14289817 AGAATAACAA
* **
14289827 AATTTTTAAAATGATATAGAGTTTTTATTT
1 AATTTTGAAAATGATATAGAAATTTTATTT
14289857 AATTTTGAAAATCGATATAGAAATTTTA
1 AATTTTGAAAAT-GATATAGAAATTTTA
14289885 ACCTAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.47
Consensus pattern (30 bp):
AATTTTGAAAATGATATAGAAATTTTATTT
Found at i:14289988 original size:17 final size:18
Alignment explanation
Indices: 14289948--14289988 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
14289938 CTTAATTTTG
14289948 ATTTT-TTAAAAACTATT
1 ATTTTATTAAAAACTATT
*
14289965 -TTCTATTAAAAA-TATT
1 ATTTTATTAAAAACTATT
14289981 ATTTTATT
1 ATTTTATT
14289989 CATAAATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTATTAAAAACTATT
Found at i:14293921 original size:18 final size:16
Alignment explanation
Indices: 14293900--14293938 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
14293890 TTTTATCACC
14293900 TTAATTTTAATTTGTTA
1 TTAATTTT-ATTTGTTA
*
14293917 GTTAATTTTATTTTTTA
1 -TTAATTTTATTTGTTA
14293934 TTAAT
1 TTAAT
14293939 AAAAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 7 0.35
18 8 0.40
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (16 bp):
TTAATTTTATTTGTTA
Found at i:14295174 original size:21 final size:21
Alignment explanation
Indices: 14295150--14295204 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
14295140 AGAATGGATG
14295150 CCGATGGCTGTCAGGAGGCTA
1 CCGATGGCTGTCAGGAGGCTA
* *
14295171 CCGATGGCTGTCAGGCGGTTA
1 CCGATGGCTGTCAGGAGGCTA
* *
14295192 TCGGTGGCTGTCA
1 CCGATGGCTGTCA
14295205 AGCGACTGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.15, C:0.24, G:0.38, T:0.24
Consensus pattern (21 bp):
CCGATGGCTGTCAGGAGGCTA
Found at i:14295244 original size:9 final size:9
Alignment explanation
Indices: 14295230--14295271 Score: 59
Period size: 9 Copynumber: 4.6 Consensus size: 9
14295220 AGTTGTCAGA
14295230 AAAAAAAAG
1 AAAAAAAAG
14295239 AAAAAAAAG
1 AAAAAAAAG
14295248 AAAAAAAA-
1 AAAAAAAAG
14295256 AAAGAAAAAG
1 AAA-AAAAAG
14295266 AGAAAA
1 A-AAAA
14295272 TAAAATACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 3 0.10
9 22 0.73
10 3 0.10
11 2 0.07
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:14295244 original size:12 final size:12
Alignment explanation
Indices: 14295229--14295264 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
14295219 AAGTTGTCAG
*
14295229 AAAAAAA-AAGA
1 AAAAAAAGAAAA
14295240 AAAAAAAGAAAA
1 AAAAAAAGAAAA
14295252 AAAAAAAGAAAA
1 AAAAAAAGAAAA
14295264 A
1 A
14295265 GAGAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 7 0.30
12 16 0.70
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:14295283 original size:20 final size:19
Alignment explanation
Indices: 14295227--14295276 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
14295217 AAAAGTTGTC
*
14295227 AGAAAAAAAAAGAAAAAAA
1 AGAAAAAAAAAAAAAAAAA
*
14295246 AGAAAAAAAAAAAGAAAAAG
1 AGAAAAAAAAAAA-AAAAAA
14295266 AGAAAATAAAA
1 AGAAAA-AAAA
14295277 TACAAAATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 12 0.44
20 11 0.41
21 4 0.15
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (19 bp):
AGAAAAAAAAAAAAAAAAA
Found at i:14295507 original size:44 final size:44
Alignment explanation
Indices: 14295458--14295593 Score: 143
Period size: 44 Copynumber: 3.1 Consensus size: 44
14295448 AATTTTTTTC
* *
14295458 AAATTTAAAAGGGCTCCTCTCAA-CAAAGGCTCGATGACTTTTAA
1 AAATTTAAAAGGGCTCCTCT-AAGCAAAGGCTCAATAACTTTTAA
* * *
14295502 AAATTTAAGAGGGCTCCTCTAAGTAGAGGCTCAATAACTTTTAA
1 AAATTTAAAAGGGCTCCTCTAAGCAAAGGCTCAATAACTTTTAA
* * * * * *
14295546 AAATAT-AAATGACTCCTCTAAGTATAGGCTCAACAAC-TTTAA
1 AAATTTAAAAGGGCTCCTCTAAGCAAAGGCTCAATAACTTTTAA
14295588 AAATTT
1 AAATTT
14295594 TATCTTAAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 10 0.13
43 28 0.35
44 41 0.52
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (44 bp):
AAATTTAAAAGGGCTCCTCTAAGCAAAGGCTCAATAACTTTTAA
Found at i:14295576 original size:43 final size:44
Alignment explanation
Indices: 14295433--14295591 Score: 139
Period size: 44 Copynumber: 3.7 Consensus size: 44
14295423 AAAAAGTTTA
* ** * * *
14295433 TCTAAGTAGAGGCTCAAT--TTTTTTCAAATTTAAAAGGGCTCC
1 TCTAAGTAGAGGCTCAATAACTTTTAAAAATATAAGAGGACTCC
* * * * * *
14295475 TCTCAA-CAAAGGCTCGATGACTTTTAAAAATTTAAGAGGGCTCC
1 TCT-AAGTAGAGGCTCAATAACTTTTAAAAATATAAGAGGACTCC
*
14295519 TCTAAGTAGAGGCTCAATAACTTTTAAAAATATAA-ATGACTCC
1 TCTAAGTAGAGGCTCAATAACTTTTAAAAATATAAGAGGACTCC
* *
14295562 TCTAAGTATAGGCTCAACAAC-TTTAAAAAT
1 TCTAAGTAGAGGCTCAATAACTTTTAAAAAT
14295592 TTTATCTTAA
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 21 0.22
43 29 0.30
44 47 0.48
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (44 bp):
TCTAAGTAGAGGCTCAATAACTTTTAAAAATATAAGAGGACTCC
Found at i:14295840 original size:98 final size:99
Alignment explanation
Indices: 14295699--14295981 Score: 338
Period size: 99 Copynumber: 2.9 Consensus size: 99
14295689 AAAAGATATG
* * *
14295699 AATGACTTCGGATATCGCCACCGAAGAAAACTCGAATATCACCATC-AAAAAATGCAATTCAAGC
1 AATGACTTCGGATATCGCCACTGAAGAAAACTCGAATATCACCATCGAAAAAATGTAATTTAAGC
* *
14295763 TTTAACACTCGGATATCACCATTGAAAATATGCA
66 TTTAACACTCAGATATCACCACTGAAAATATGCA
* * * * *
14295797 AATGACTTTGGATATCACCATTGAAGAAAACTTGAATATCACCACCGAAAAAATGTAATTTAA-C
1 AATGACTTCGGATATCGCCACTGAAGAAAACTCGAATATCACCATCGAAAAAATGTAATTTAAGC
* ** *
14295861 TTTTAACCCTTTGATATCACCACTGAGAATATGCA
66 -TTTAACACTCAGATATCACCACTGAAAATATGCA
* * * * * * *
14295896 AATGAGTTCGAATATCGCCACTAAAGGAAAA-TCAAATATCACCATCGAGAAAATATATTTTAAG
1 AATGACTTCGGATATCGCCACTGAA-GAAAACTCGAATATCACCATCGAAAAAATGTAATTTAAG
14295960 CTTTAACACTCAGATATCACCA
65 CTTTAACACTCAGATATCACCA
14295982 ACGAGAAAAT
Statistics
Matches: 153, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
98 41 0.27
99 106 0.69
100 6 0.04
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (99 bp):
AATGACTTCGGATATCGCCACTGAAGAAAACTCGAATATCACCATCGAAAAAATGTAATTTAAGC
TTTAACACTCAGATATCACCACTGAAAATATGCA
Found at i:14295978 original size:42 final size:42
Alignment explanation
Indices: 14295931--14296107 Score: 196
Period size: 42 Copynumber: 4.2 Consensus size: 42
14295921 GGAAAATCAA
* * * * *
14295931 ATATCACCATCGAGAAAATATATTTTAAGCTTTAACACTCAG
1 ATATCACCAACGAGAAAATACAATTCAAACTTTAACACTCAG
*
14295973 ATATCACCAACGAGAAAATACAATTCAAACTTTAACACTCGG
1 ATATCACCAACGAGAAAATACAATTCAAACTTTAACACTCAG
* * * * * *
14296015 ATATCACCACCGAGGAGATGCAATTCAAACTTTATCACTCAA
1 ATATCACCAACGAGAAAATACAATTCAAACTTTAACACTCAG
* *
14296057 ATATCACC-ACTGA-AAAGATGCAATTCAAACTTTAACGCTCAG
1 ATATCACCAAC-GAGAAA-ATACAATTCAAACTTTAACACTCAG
14296099 ATATCACCA
1 ATATCACCA
14296108 CTAAGATGAT
Statistics
Matches: 113, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
41 2 0.02
42 111 0.98
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (42 bp):
ATATCACCAACGAGAAAATACAATTCAAACTTTAACACTCAG
Found at i:14296226 original size:225 final size:225
Alignment explanation
Indices: 14295831--14296262 Score: 523
Period size: 225 Copynumber: 1.9 Consensus size: 225
14295821 AGAAAACTTG
* * ** *
14295831 AATATCACCACCGAAAAAATGTAATTTAACTTTTAACCCTTTGATATCACCACTGAGAATATGCA
1 AATATCACCACCGAAAAAATGCAATTAAACTTTTAACCCTCAGATATCACCACTAAGAATATGCA
* * * * *
14295896 AATGAGTTCGAATATCGCCACTAAAGGAAAATCAAATATCACCATCGAGAAAATATATTTTAAGC
66 AATGACTTCGAATATCACCACTAAAGGAAAATCAAATATCACCATCGAGAAAATACAATTTAAAC
* *
14295961 TTTAACACTCAGATATCACCAACGAGAAAATACAATTCAAACTTTAACACTCGGATATCACCACC
131 TTTAACACTCAGATATCACCAACAAGAAAATACAATTCAAACTTTAACACTCAGATATCACCACC
*
14296026 GAGGAGATGCAATTCAAACTTTATCACTCA
196 GAGAAGATGCAATTCAAACTTTATCACTCA
* * *
14296056 AATATCACCACTGAAAAGATGCAATTCAAAC-TTTAACGCTCAGATATCACCACTAAG-ATGATG
1 AATATCACCACCGAAAAAATGCAATT-AAACTTTTAACCCTCAGATATCACCACTAAGAAT-ATG
* * * * *
14296119 CAAATGACTTC-AGATATCACCA-TCGAA-GAAAACTCGAATATCGCCATCGAGAAATTGCAATT
64 CAAATGACTTCGA-ATATCACCACT-AAAGGAAAA-TCAAATATCACCATCGAGAAAATACAATT
* * ** * ** *
14296181 TAAACTTTATCACTCAGGTATCACCATTAAGAAGATGTAATTCAAATTTTAACACTCAGATATCA
126 TAAACTTTAACACTCAGATATCACCAACAAGAAAATACAATTCAAACTTTAACACTCAGATATCA
14296246 CCACCGAGAAGATGCAA
191 CCACCGAGAAGATGCAA
14296263 ATGACTTCGA
Statistics
Matches: 173, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
224 9 0.05
225 161 0.93
226 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (225 bp):
AATATCACCACCGAAAAAATGCAATTAAACTTTTAACCCTCAGATATCACCACTAAGAATATGCA
AATGACTTCGAATATCACCACTAAAGGAAAATCAAATATCACCATCGAGAAAATACAATTTAAAC
TTTAACACTCAGATATCACCAACAAGAAAATACAATTCAAACTTTAACACTCAGATATCACCACC
GAGAAGATGCAATTCAAACTTTATCACTCA
Found at i:14296256 original size:42 final size:42
Alignment explanation
Indices: 14296177--14296259 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
14296167 GAGAAATTGC
* * * **
14296177 AATTTAAACTTTATCACTCAGGTATCACCATTAAGAAGATGT
1 AATTCAAACTTTAACACTCAGATATCACCACCAAGAAGATGT
* *
14296219 AATTCAAATTTTAACACTCAGATATCACCACCGAGAAGATG
1 AATTCAAACTTTAACACTCAGATATCACCACCAAGAAGATG
14296260 CAAATGACTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (42 bp):
AATTCAAACTTTAACACTCAGATATCACCACCAAGAAGATGT
Found at i:14296263 original size:141 final size:141
Alignment explanation
Indices: 14296033--14296306 Score: 408
Period size: 141 Copynumber: 1.9 Consensus size: 141
14296023 ACCGAGGAGA
*
14296033 TGCAATTCAAACTTTATCACTCAAATATCACCACTGAAAAGATGCAATTCAAACTTTAACGCTCA
1 TGCAATTCAAACTTTATCACTCAAATATCACCACTGAAAAGATGCAATTCAAACTTTAACACTCA
* * *
14296098 GATATCACCACTAAGATGATGCAAATGACTTC-AGATATCACCATCGAAGAAAACTCGAATATCG
66 GATATCACCACCAAGAAGATGCAAATGACTTCGA-ATATCACCACCGAAGAAAACTCGAATATCG
14296162 CCATCGAGAAAT
130 CCATCGAGAAAT
* ** * * *
14296174 TGCAATTTAAACTTTATCACTCAGGTATCACCA-TTAAGAAGATGTAATTCAAATTTTAACACTC
1 TGCAATTCAAACTTTATCACTCAAATATCACCACTGAA-AAGATGCAATTCAAACTTTAACACTC
* *
14296238 AGATATCACCACCGAGAAGATGCAAATGACTTCGAATATCACCACCGAAGGAAACTCGAATATCG
65 AGATATCACCACCAAGAAGATGCAAATGACTTCGAATATCACCACCGAAGAAAACTCGAATATCG
14296303 CCAT
130 CCAT
14296307 TGAAAAAATG
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
140 3 0.03
141 115 0.97
142 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.25
Consensus pattern (141 bp):
TGCAATTCAAACTTTATCACTCAAATATCACCACTGAAAAGATGCAATTCAAACTTTAACACTCA
GATATCACCACCAAGAAGATGCAAATGACTTCGAATATCACCACCGAAGAAAACTCGAATATCGC
CATCGAGAAAT
Found at i:14296545 original size:133 final size:133
Alignment explanation
Indices: 14296308--14296822 Score: 500
Period size: 133 Copynumber: 4.0 Consensus size: 133
14296298 TATCGCCATT
* * * * * * ** *
14296308 GAAAA-AATGAAAACATAAAGAAAGAGTGCAAATTCAAACTTTAAACTTAGATATCACCACCAAG
1 GAAAAGAATGCAAATATAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGAG
* *
14296372 TGATTTTGAAAATCTCTTGAATATCACCATT-AAGAAATAAAATTCATACTTTAATACTCGGATA
66 TGATTTTGAAAATGTCTTGAATATCACC-TTAAAAAAATAAAATTCATACTTTAATACTCGGATA
14296436 TCAC
130 TCAC
14296440 TGAAAA-AATGCAAATATAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGA
1 -GAAAAGAATGCAAATATAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGA
* **
14296504 GTGATTTTGAAAATGTCTTGAATATTACCTTAAAAAAATAAAATTCATACTTTAATACTCAAATA
65 GTGATTTTGAAAATGTCTTGAATATCACCTTAAAAAAATAAAATTCATACTTTAATACTCGGATA
14296569 TCAC
130 TCAC
* * * * * *
14296573 CAAGAAGAATGTAAAT-T----CAA-ACTTTAAACTCAAA---T--A-TC--AT-T----ACCGA
1 GAA-AAGAATGCAAATATAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGA
* * * * * * *
14296619 ATGATTTTGAAAATATCTTGAATGTCACTTTTAAGAAAATGAAATTCATACTTTAATACTTGGAT
65 GTGATTTTGAAAATGTCTTGAATATCAC-CTTAAAAAAATAAAATTCATACTTTAATACTCGGAT
14296684 ATCAC
129 ATCAC
* * * * * *
14296689 AAAAAGAATGCAAATGTAGAGAAAGAATGTAAAGTCAAACTTTAAACTTGAATATCACTACTGAG
1 GAAAAGAATGCAAATATAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGAG
* *
14296754 TGATTTTGAAAATGTCTTGAATA-CTACCTTCAAGAAAATGAAATTCATACTTTAATACTCGGAT
66 TGATTTTGAAAATGTCTTGAATATC-ACCTT-AAAAAAATAAAATTCATACTTTAATACTCGGAT
14296818 ATCAC
129 ATCAC
14296823 CATCAAGAAG
Statistics
Matches: 314, Mismatches: 43, Indels: 49
0.77 0.11 0.12
Matches are distributed among these distances:
115 40 0.13
116 38 0.12
119 1 0.00
120 4 0.01
121 11 0.04
122 2 0.01
123 1 0.00
124 1 0.00
125 1 0.00
126 1 0.00
127 1 0.00
128 11 0.04
129 4 0.01
130 1 0.00
132 4 0.01
133 121 0.39
134 72 0.23
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (133 bp):
GAAAAGAATGCAAATATAGAGAAAGAATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGAG
TGATTTTGAAAATGTCTTGAATATCACCTTAAAAAAATAAAATTCATACTTTAATACTCGGATAT
CAC
Found at i:14296696 original size:115 final size:114
Alignment explanation
Indices: 14296461--14296886 Score: 386
Period size: 115 Copynumber: 3.5 Consensus size: 114
14296451 AAATATAGAG
* ** *
14296461 AAAGAATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGAGTGATTTTGAAAATGTCTTGAA
1 AAAGAATGTAAATTCAAACTTTAAACTCAAATATCACTACCGAGTGATTTTGAAAATGTCTTGAA
* * * * **
14296526 TATTACCTTAAAAAAATAAAATTCATACTTTAATACTCAAATATCACCAA
66 T-TCACTTTAAGAAAATGAAATTCATACTTTAATACTCGGATATCACCAA
* * * *
14296576 GAAGAATGTAAATTCAAACTTTAAACTCAAATATCATTACCGAATGATTTTGAAAATATCTTGAA
1 AAAGAATGTAAATTCAAACTTTAAACTCAAATATCACTACCGAGTGATTTTGAAAATGTCTTGAA
*
14296641 TGTCACTTTTAAGAAAATGAAATTCATACTTTAATACTTGGATATCA-CAA
66 T-TCAC-TTTAAGAAAATGAAATTCATACTTTAATACTCGGATATCACCAA
* * * * *
14296691 AAAGAATGCAAATGTAGAGAAAGAATGTAAAGTCAAACTTTAAACTTGAATATCACTACTGAGTG
1 AAAGAATGTAAAT-T----CAA-ACT-T----T-AAAC--T---C--AAATATCACTACCGAGTG
* *
14296756 ATTTTGAAAATGTCTTGAATACTACCTTCAAGAAAATGAAATTCATACTTTAATACTCGGATATC
47 ATTTTGAAAATGTCTTGAATTC-A-CTTTAAGAAAATGAAATTCATACTTTAATACTCGGATATC
14296821 ACCATCA
110 ACCA--A
* *
14296828 AGAAGAATGTAAATTCAAACTTTAAACTCAGATATCACTATCGAGTGATTTTGAAAATG
1 A-AAGAATGTAAATTCAAACTTTAAACTCAAATATCACTACCGAGTGATTTTGAAAATG
14296887 ATTTATCACA
Statistics
Matches: 250, Mismatches: 35, Indels: 48
0.75 0.11 0.14
Matches are distributed among these distances:
115 75 0.30
116 35 0.14
119 26 0.10
120 2 0.01
121 3 0.01
122 1 0.00
124 1 0.00
126 5 0.02
127 5 0.02
129 1 0.00
131 1 0.00
132 3 0.01
133 3 0.01
134 72 0.29
135 3 0.01
137 3 0.01
138 11 0.04
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (114 bp):
AAAGAATGTAAATTCAAACTTTAAACTCAAATATCACTACCGAGTGATTTTGAAAATGTCTTGAA
TTCACTTTAAGAAAATGAAATTCATACTTTAATACTCGGATATCACCAA
Found at i:14296759 original size:134 final size:134
Alignment explanation
Indices: 14296577--14296822 Score: 377
Period size: 134 Copynumber: 1.8 Consensus size: 134
14296567 TATCACCAAG
* *
14296577 AAGAATGTAAATTCAAACTTTAAACTCAAATATCATTACCGAATGATTTTGAAAATATCTTGAAT
1 AAGAATGTAAAGTCAAACTTTAAACTCAAATATCACTACCGAATGATTTTGAAAATATCTTGAAT
* * * *
14296642 -GTCACTTTTAAGAAAATGAAATTCATACTTTAATACTTGGATATCACAAAAAGAATGCAAATGT
66 ACT-ACCTTCAAGAAAATGAAATTCATACTTTAATACTCGGATATCACAAAAAGAATGCAAATGT
14296706 AGAGA
130 AGAGA
** * * *
14296711 AAGAATGTAAAGTCAAACTTTAAACTTGAATATCACTACTGAGTGATTTTGAAAATGTCTTGAAT
1 AAGAATGTAAAGTCAAACTTTAAACTCAAATATCACTACCGAATGATTTTGAAAATATCTTGAAT
14296776 ACTACCTTCAAGAAAATGAAATTCATACTTTAATACTCGGATATCAC
66 ACTACCTTCAAGAAAATGAAATTCATACTTTAATACTCGGATATCAC
14296823 CATCAAGAAG
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
134 99 0.99
135 1 0.01
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (134 bp):
AAGAATGTAAAGTCAAACTTTAAACTCAAATATCACTACCGAATGATTTTGAAAATATCTTGAAT
ACTACCTTCAAGAAAATGAAATTCATACTTTAATACTCGGATATCACAAAAAGAATGCAAATGTA
GAGA
Found at i:14296774 original size:249 final size:251
Alignment explanation
Indices: 14296337--14296885 Score: 820
Period size: 249 Copynumber: 2.2 Consensus size: 251
14296327 GAAAGAGTGC
* * *
14296337 AAATTCAAACTTTAAACTTAGATATCACCACC-AAGTGATTTTGAAAATCTCTTGAATATCACCA
1 AAATTCAAACTTTAAACTCAGATATCACTACCGAA-TGATTTTGAAAATATCTTGAATATCACCA
*
14296401 TTAAGAAATAAAATTCATACTTTAATACTCGGATATCACTGAAAAAATGCAAATATAGAGAAAGA
65 TTAAGAAATAAAATTCATACTTTAATACTCGGATATCACTAAAAAAATGCAAATATAGAGAAAGA
* *
14296466 ATGTAAAGTCAAACTTTAAACTCGGATATCACCACCGAGTGATTTTGAAAATGTCTTGAATATTA
130 ATGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGTGATTTTGAAAATGTCTTGAATACTA
14296531 CCTT-AAAAAAATAAAATTCATACTTTAATACTCAAATATCA-C-CAAGAAGAATGT
195 CCTTCAAAAAAATAAAATTCATACTTTAATACTCAAATATCACCACAAGAAGAATGT
* * * **
14296585 AAATTCAAACTTTAAACTCAAATATCATTACCGAATGATTTTGAAAATATCTTGAATGTCACTTT
1 AAATTCAAACTTTAAACTCAGATATCACTACCGAATGATTTTGAAAATATCTTGAATATCACCAT
* * *
14296650 TAAGAAAATGAAATTCATACTTTAATACTTGGATATCAC-AAAAAGAATGCAAATGTAGAGAAAG
66 TAAG-AAATAAAATTCATACTTTAATACTCGGATATCACTAAAAA-AATGCAAATATAGAGAAAG
* * *
14296714 AATGTAAAGTCAAACTTTAAACTTGAATATCACTACTGAGTGATTTTGAAAATGTCTTGAATACT
129 AATGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGTGATTTTGAAAATGTCTTGAATACT
* * **
14296779 ACCTTCAAGAAAATGAAATTCATACTTTAATACTCGGATATCACCATCAAGAAGAATGT
194 ACCTTCAAAAAAATAAAATTCATACTTTAATACTCAAATATCACCA-CAAGAAGAATGT
* *
14296838 AAATTCAAACTTTAAACTCAGATATCACTATCGAGTGATTTTGAAAAT
1 AAATTCAAACTTTAAACTCAGATATCACTACCGAATGATTTTGAAAAT
14296886 GATTTATCAC
Statistics
Matches: 269, Mismatches: 25, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
248 62 0.23
249 117 0.43
250 33 0.12
251 1 0.00
253 56 0.21
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (251 bp):
AAATTCAAACTTTAAACTCAGATATCACTACCGAATGATTTTGAAAATATCTTGAATATCACCAT
TAAGAAATAAAATTCATACTTTAATACTCGGATATCACTAAAAAAATGCAAATATAGAGAAAGAA
TGTAAAGTCAAACTTTAAACTCGAATATCACCACCGAGTGATTTTGAAAATGTCTTGAATACTAC
CTTCAAAAAAATAAAATTCATACTTTAATACTCAAATATCACCACAAGAAGAATGT
Found at i:14296844 original size:44 final size:41
Alignment explanation
Indices: 14296783--14296865 Score: 121
Period size: 43 Copynumber: 2.0 Consensus size: 41
14296773 AATACTACCT
* *
14296783 TCAAGAAAATGAAATTCATACTTTAATACTCGGATATCACCA
1 TCAAGAAAATGAAATTCAAACTTTAA-ACTCAGATATCACCA
14296825 TCAAGAAGAATGTAAATTCAAACTTTAAACTCAGATATCAC
1 TCAAGAA-AATG-AAATTCAAACTTTAAACTCAGATATCAC
14296866 TATCGAGTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 7 0.19
43 16 0.43
44 14 0.38
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.28
Consensus pattern (41 bp):
TCAAGAAAATGAAATTCAAACTTTAAACTCAGATATCACCA
Found at i:14297205 original size:35 final size:35
Alignment explanation
Indices: 14297077--14297197 Score: 163
Period size: 35 Copynumber: 3.5 Consensus size: 35
14297067 CACAACTATG
*
14297077 ATGCAAATGT-TTTCTCTCAAAATGATGAAAATGAA
1 ATGCAAATGTCTTT-TCTTAAAATGATGAAAATGAA
* * * *
14297112 ATGCAAATCTTTTTTCTTAAAATGATGGATATGAA
1 ATGCAAATGTCTTTTCTTAAAATGATGAAAATGAA
*
14297147 ATGCAAGTGTCTTTTCTTAAAATGATGAAAATGAA
1 ATGCAAATGTCTTTTCTTAAAATGATGAAAATGAA
*
14297182 ATACAAATGTCTTTTC
1 ATGCAAATGTCTTTTC
14297198 CAAAAATGCC
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
35 71 0.96
36 3 0.04
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (35 bp):
ATGCAAATGTCTTTTCTTAAAATGATGAAAATGAA
Found at i:14297674 original size:24 final size:24
Alignment explanation
Indices: 14297629--14297675 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14297619 TTTTTTCAAA
* *
14297629 ATTTTATTTACATTCCCTAAAAAC
1 ATTTTATTTACATTCACAAAAAAC
14297653 ATTTTATTTTA-ATTCACAAAAAA
1 ATTTTA-TTTACATTCACAAAAAA
14297676 AAATTGCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.43
Consensus pattern (24 bp):
ATTTTATTTACATTCACAAAAAAC
Found at i:14298781 original size:8 final size:8
Alignment explanation
Indices: 14298770--14298807 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
14298760 TTATCATTTT
14298770 TTTTTTGC
1 TTTTTTGC
14298778 -TTTTTGC
1 TTTTTTGC
14298785 TTTTTTGC
1 TTTTTTGC
14298793 TTTTTTTGC
1 -TTTTTTGC
14298802 TTTTTT
1 TTTTTT
14298808 TTCACTTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 8 0.29
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.79
Consensus pattern (8 bp):
TTTTTTGC
Found at i:14298781 original size:9 final size:9
Alignment explanation
Indices: 14298769--14298808 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
14298759 TTTATCATTT
14298769 TTTTTTTGC
1 TTTTTTTGC
14298778 --TTTTTGC
1 TTTTTTTGC
14298785 -TTTTTTGC
1 TTTTTTTGC
14298793 TTTTTTTGC
1 TTTTTTTGC
14298802 TTTTTTT
1 TTTTTTT
14298809 TCACTTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.24
8 7 0.24
9 15 0.52
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.80
Consensus pattern (9 bp):
TTTTTTTGC
Found at i:14304257 original size:14 final size:15
Alignment explanation
Indices: 14304230--14304263 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
14304220 TTTTTTTGGC
14304230 TTTTTAACAGAGTTT
1 TTTTTAACAGAGTTT
*
14304245 TTTTTAAC-TAGTTT
1 TTTTTAACAGAGTTT
14304259 TTTTT
1 TTTTT
14304264 TTCAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.21, C:0.06, G:0.09, T:0.65
Consensus pattern (15 bp):
TTTTTAACAGAGTTT
Found at i:14307694 original size:3 final size:3
Alignment explanation
Indices: 14307686--14307729 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
14307676 AGGATTGGAG
14307686 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14307730 GGTAGAGTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14308715 original size:15 final size:16
Alignment explanation
Indices: 14308695--14308724 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14308685 CAATGATATA
14308695 AAAAATTT-TAATTAC
1 AAAAATTTATAATTAC
14308710 AAAAATTTATAATTA
1 AAAAATTTATAATTA
14308725 ATTACAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAAATTTATAATTAC
Found at i:14311696 original size:28 final size:28
Alignment explanation
Indices: 14311640--14311696 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
14311630 GTGTAAAGTG
**
14311640 ACTGAATGAAAATCAAGGTGAAATGGGA
1 ACTGAATGAAAATCAAGGTGAAACAGGA
*
14311668 ACTGAATGAAAATCAAGGTGGAACAGGA
1 ACTGAATGAAAATCAAGGTGAAACAGGA
14311696 A
1 A
14311697 ATTGGGGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (28 bp):
ACTGAATGAAAATCAAGGTGAAACAGGA
Found at i:14314022 original size:2 final size:2
Alignment explanation
Indices: 14314012--14314045 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
14314002 ATATAAACAA
*
14314012 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14314046 GTACACATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14318072 original size:3 final size:3
Alignment explanation
Indices: 14318064--14318098 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
14318054 TCAAGTCTTA
14318064 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
14318099 GAGTTATTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14318514 original size:13 final size:13
Alignment explanation
Indices: 14318496--14318521 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14318486 ACCCATCCTA
14318496 CTTTTTTCTTTTT
1 CTTTTTTCTTTTT
14318509 CTTTTTTCTTTTT
1 CTTTTTTCTTTTT
14318522 GTCATCCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
CTTTTTTCTTTTT
Found at i:14322424 original size:21 final size:20
Alignment explanation
Indices: 14322386--14322424 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
14322376 TATCAATAAA
**
14322386 TCAAAAAGTAGTTGATTGTC
1 TCAAAAAGTAGTCAATTGTC
14322406 TCAATAAAGTAGTCAATTG
1 TCAA-AAAGTAGTCAATTG
14322425 CCTTTACAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (20 bp):
TCAAAAAGTAGTCAATTGTC
Found at i:14324378 original size:13 final size:13
Alignment explanation
Indices: 14324362--14324398 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
14324352 TGATTAAATA
14324362 AAAATTAAAATTG
1 AAAATTAAAATTG
*
14324375 AAAATCAAAATTG
1 AAAATTAAAATTG
14324388 ATAAATTAAAA
1 A-AAATTAAAA
14324399 AGACTTAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (13 bp):
AAAATTAAAATTG
Found at i:14332370 original size:2 final size:2
Alignment explanation
Indices: 14332365--14332389 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14332355 CATATATAAA
14332365 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
14332390 AGGGGAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14335616 original size:109 final size:108
Alignment explanation
Indices: 14335419--14335634 Score: 238
Period size: 109 Copynumber: 2.0 Consensus size: 108
14335409 AATGTTGTTC
* * * * *
14335419 ATTTATACCTTTAATTAGTTTATGTAATCATCTTTATGAGATGATATCTAAGAGGTTTATAGTTC
1 ATTTATACCTTTAATTAGTTTATATAATCATCTTTATGAGATGATATCTAACAAGTCTACAGTTC
* * * * *
14335484 AAATCTTAACACCTGCAATTATTTCTCTTTTTTTTTAGACTATG
66 AAATCTCAACACCTACAACTATTTCTC-TTATTTTCAGACTATG
* * * * *
14335528 ATTTATACCTTTCATT-GATTTATATAATCATTTTTATGAGGTGGTATCTAACAAGTCTACCGTT
1 ATTTATACCTTTAATTAG-TTTATATAATCATCTTTATGAGATGATATCTAACAAGTCTACAGTT
* *
14335592 CAAAT-TCCAATACCTATAACTATTTCTCTTATTTTCAGACTAT
65 CAAATCT-CAACACCTACAACTATTTCTCTTATTTTCAGACTAT
14335635 AAATTTTTTT
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
108 15 0.17
109 73 0.83
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (108 bp):
ATTTATACCTTTAATTAGTTTATATAATCATCTTTATGAGATGATATCTAACAAGTCTACAGTTC
AAATCTCAACACCTACAACTATTTCTCTTATTTTCAGACTATG
Found at i:14336896 original size:2 final size:2
Alignment explanation
Indices: 14336889--14336930 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
14336879 GACTTCACAT
14336889 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
14336931 ATGAACATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14339002 original size:28 final size:27
Alignment explanation
Indices: 14338971--14339025 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
14338961 GACCACTCTT
14338971 TTTTCT-TACATCTTTTCTTTTGTTTTTA
1 TTTTCTATA-ATCTTTT-TTTTGTTTTTA
* *
14338999 TTTTGTATAATCTTTTTTTTTTTTTTA
1 TTTTCTATAATCTTTTTTTTGTTTTTA
14339026 CCCTTTAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 10 0.42
28 12 0.50
29 2 0.08
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.75
Consensus pattern (27 bp):
TTTTCTATAATCTTTTTTTTGTTTTTA
Found at i:14342687 original size:20 final size:20
Alignment explanation
Indices: 14342672--14342711 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14342662 GCAAAAATTA
*
14342672 TATGGCTTAAAGAAAAGATCT
1 TATGCCTTAAAGAAAA-ATCT
*
14342693 TATTCCTTAAAGAAAAATC
1 TATGCCTTAAAGAAAAATC
14342712 AAGACCATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (20 bp):
TATGCCTTAAAGAAAAATCT
Found at i:14348336 original size:20 final size:20
Alignment explanation
Indices: 14348311--14348349 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
14348301 TATTTCAGAA
*
14348311 ACCAGAGTCTAACTATTAGC
1 ACCAGAGTCCAACTATTAGC
14348331 ACCAGAGTCCAACTATTAG
1 ACCAGAGTCCAACTATTAG
14348350 AACAAGGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (20 bp):
ACCAGAGTCCAACTATTAGC
Found at i:14354979 original size:2 final size:2
Alignment explanation
Indices: 14354972--14355004 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14354962 CTTTGCCTTC
14354972 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
14355005 CCCAAAACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:14356446 original size:19 final size:19
Alignment explanation
Indices: 14356422--14356495 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 19
14356412 ATAAAATACA
14356422 TTATATATTTTTATTAAATT
1 TTATATATTTTTATTAAA-T
14356442 TATATATAATTTTTATTCAAAT
1 T-TATAT-ATTTTTATT-AAAT
*
14356464 TT-TA-AATTTTATT--AT
1 TTATATATTTTTATTAAAT
*
14356479 TTAATATCTTTTTATTA
1 TT-ATATATTTTTATTA
14356496 TTGTATTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
15 4 0.09
17 2 0.05
18 15 0.34
20 3 0.07
21 6 0.14
22 11 0.25
23 3 0.07
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATATATTTTTATTAAAT
Found at i:14356453 original size:22 final size:22
Alignment explanation
Indices: 14356423--14356465 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14356413 TAAAATACAT
14356423 TATATATTTTTATT-AAATTTA
1 TATATATTTTTATTCAAATTTA
14356444 TATATAATTTTTATTCAAATTT
1 TATAT-ATTTTTATTCAAATTT
14356466 TAAATTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.25
22 9 0.45
23 6 0.30
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TATATATTTTTATTCAAATTTA
Found at i:14362231 original size:111 final size:112
Alignment explanation
Indices: 14362058--14362271 Score: 376
Period size: 111 Copynumber: 1.9 Consensus size: 112
14362048 AGGATAAACT
*
14362058 AATCATGCTCTTTTTTTAAACACTCAAAGCATGACAAAAAGACTATCTTAATTATTTATGTTGAT
1 AATCATACTCTTTTTTTAAACACTCAAAGCATGACAAAAAGACTATCTTAATTATTTATGTTGAT
* *
14362123 GATATTATACTAAC-GGTGATGACATGAAGAAATAGAGCAACTAAAG
66 AATATTATACTAACAGGTGATGACATAAAGAAATAGAGCAACTAAAG
* *
14362169 AATCATACTCTTTTTTTAAACACTCAAAGCATGACAAAAAGACTATCTTAATTGTTTGTGTTGAT
1 AATCATACTCTTTTTTTAAACACTCAAAGCATGACAAAAAGACTATCTTAATTATTTATGTTGAT
14362234 AATATTATACTAACAGGTGATGACATAAAGAAATAGAG
66 AATATTATACTAACAGGTGATGACATAAAGAAATAGAG
14362272 TGGCTAAAAA
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
111 75 0.77
112 22 0.23
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (112 bp):
AATCATACTCTTTTTTTAAACACTCAAAGCATGACAAAAAGACTATCTTAATTATTTATGTTGAT
AATATTATACTAACAGGTGATGACATAAAGAAATAGAGCAACTAAAG
Found at i:14363598 original size:2 final size:2
Alignment explanation
Indices: 14363587--14363628 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
14363577 AAGGAATTCA
14363587 AT AT -T AT AT AT AT AT A- AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14363626 AT A
1 AT A
14363629 AACTCAATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 3 0.08
2 34 0.92
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14363606 original size:9 final size:9
Alignment explanation
Indices: 14363586--14363629 Score: 67
Period size: 9 Copynumber: 5.2 Consensus size: 9
14363576 AAAGGAATTC
14363586 AATAT-TAT
1 AATATATAT
14363594 -ATATATAT
1 AATATATAT
14363602 AATATATAT
1 AATATATAT
14363611 AATATATAT
1 AATATATAT
14363620 -ATATATAT
1 AATATATAT
14363628 AA
1 AA
14363630 ACTCAATTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 4 0.12
8 11 0.33
9 18 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATATATAT
Found at i:14364305 original size:23 final size:24
Alignment explanation
Indices: 14364248--14364305 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 24
14364238 ACAGGGATTT
14364248 TTATTTG-AAAAAGATTTTTTTTG
1 TTATTTGTAAAAAGATTTTTTTTG
*
14364271 TTATTTATTAAAAAGATTTTTTTTG
1 TTATTT-GTAAAAAGATTTTTTTTG
14364296 TT-TTTGTAAA
1 TTATTTGTAAA
14364306 TTTTTTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 10 0.32
24 3 0.10
25 18 0.58
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (24 bp):
TTATTTGTAAAAAGATTTTTTTTG
Found at i:14365365 original size:3 final size:3
Alignment explanation
Indices: 14365346--14365394 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
14365336 AAAGGAAATA
*
14365346 AAT AAT AA- ATAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14365391 AAT A
1 AAT A
14365395 GCATACTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14365578 original size:4 final size:4
Alignment explanation
Indices: 14365569--14365643 Score: 50
Period size: 4 Copynumber: 18.5 Consensus size: 4
14365559 AAGGAATTAC
14365569 TTAT TTAT TT-T TATAT TT-T TTCA- TTAT TTA- TTAT TTAT TTAGGGT
1 TTAT TTAT TTAT T-TAT TTAT TT-AT TTAT TTAT TTAT TTAT TTA---T
* * *
14365614 TTAT TTTT TTAC CTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
14365644 GATGAAAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
3 9 0.16
4 41 0.73
5 2 0.04
7 4 0.07
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (4 bp):
TTAT
Found at i:14368441 original size:3 final size:3
Alignment explanation
Indices: 14368428--14368467 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
14368418 TAATCTAATC
14368428 TAA TCAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14368468 GAAAAAAACC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14369287 original size:3 final size:3
Alignment explanation
Indices: 14369281--14369380 Score: 57
Period size: 3 Copynumber: 32.7 Consensus size: 3
14369271 AAAATAGATA
*
14369281 AAT AAT AA- AAT -AT ATT AAT AGAT AAAT AA- AA- AGAT AAT AGAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT AAT A-AT AAT A-AT -AAT
* * * *
14369327 AAAT AA- AAT AAT AAT CAT AAT CAT AAT AAT CAT AAT AAT AAT GAAA
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
14369373 AAT AAT AA
1 AAT AAT AA
14369381 AATTAAAAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
2 9 0.12
3 51 0.66
4 15 0.19
5 2 0.03
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:14369339 original size:20 final size:20
Alignment explanation
Indices: 14369263--14369339 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
14369253 TCAAGAAAAA
* *
14369263 AAATAAAAAAAATAGATAAAT
1 AAATAAATAAAATA-ATAGAT
* *
14369284 -AATAAAATATATTAATAGAT
1 AAAT-AAATAAAATAATAGAT
*
14369304 AAATAAA-AAGATAATAGAT
1 AAATAAATAAAATAATAGAT
14369323 AAATAAATAAAATAATA
1 AAATAAATAAAATAATA
14369340 ATCATAATCA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
19 16 0.36
20 19 0.42
21 10 0.22
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (20 bp):
AAATAAATAAAATAATAGAT
Found at i:14369354 original size:15 final size:15
Alignment explanation
Indices: 14369329--14369368 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
14369319 AGATAAATAA
14369329 ATAA-AATAATAATC
1 ATAATAATAATAATC
*
14369343 ATAATCATAATAATC
1 ATAATAATAATAATC
14369358 ATAATAATAAT
1 ATAATAATAAT
14369369 GAAAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATAATAATAATC
Found at i:14373092 original size:47 final size:47
Alignment explanation
Indices: 14373035--14373127 Score: 132
Period size: 47 Copynumber: 2.0 Consensus size: 47
14373025 TTTTATTTTT
* * *
14373035 TATTTTATTTCTAAATTTTTTACCATTTGGGTCAATTTAGAAATTTC
1 TATTTGATTTCTAAATTTTTCACCATTTAGGTCAATTTAGAAATTTC
** *
14373082 TATTTGATTTCTAAATTTTTCACTGTTTAGGTCTATTTAGAAATTT
1 TATTTGATTTCTAAATTTTTCACCATTTAGGTCAATTTAGAAATTT
14373128 TTTTTTTGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.54
Consensus pattern (47 bp):
TATTTGATTTCTAAATTTTTCACCATTTAGGTCAATTTAGAAATTTC
Found at i:14373491 original size:174 final size:175
Alignment explanation
Indices: 14373177--14373499 Score: 456
Period size: 174 Copynumber: 1.9 Consensus size: 175
14373167 TATTTTCTTA
* * *
14373177 AAATTTCATTTAAATTCTTCCACTATTTGGGATAAATTTAAAGAAATTTCTCACCTAGAGATTTC
1 AAATTTCATTTAAATTATTCCACAATTTGGGACAAATTTAAAGAAATTTCTCACCTAGAGATTTC
* * *
14373242 TTAAGAAATTTACCATTTGAAATTTTTAAAAATCTCATAATTGAATAATTGTCAAATATTTTTCA
66 TTAAGAAATTTACCATTTGAAATTTCTAAAAATCTCATAATTGAATAATTGTCAAATATATTCCA
*
14373307 ACCAAAAA-TTTTTTATTTGAAAAAGAATACAATTACTTTTACTG
131 ACAAAAAATTTTTTTATTTGAAAAAGAATACAATTACTTTTACTG
*
14373351 AAATTTCATTTAAATTATTCCACAATTTGGGACAAATTTAGAGAAATTTCTCACCTAGAGATTTC
1 AAATTTCATTTAAATTATTCCACAATTTGGGACAAATTTAAAGAAATTTCTCACCTAGAGATTTC
* * * * * **
14373416 TTAGGATATTTACCATTTGAAATTTCTAAGAATCTCATCATTGAGTAATTAGT-ATTTA-ATTCC
66 TTAAGAAATTTACCATTTGAAATTTCTAAAAATCTCATAATTGAATAATT-GTCAAATATATTCC
14373479 AA-AATTAAAATTTTTTTATTT
130 AACAA--AAAATTTTTTTATTT
14373500 TTTTTATTTT
Statistics
Matches: 130, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
172 1 0.01
173 5 0.04
174 112 0.86
175 12 0.09
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.41
Consensus pattern (175 bp):
AAATTTCATTTAAATTATTCCACAATTTGGGACAAATTTAAAGAAATTTCTCACCTAGAGATTTC
TTAAGAAATTTACCATTTGAAATTTCTAAAAATCTCATAATTGAATAATTGTCAAATATATTCCA
ACAAAAAATTTTTTTATTTGAAAAAGAATACAATTACTTTTACTG
Found at i:14381326 original size:29 final size:29
Alignment explanation
Indices: 14381254--14381395 Score: 110
Period size: 29 Copynumber: 4.8 Consensus size: 29
14381244 TGTTAAATGT
* * **
14381254 TTTATTTACATACAAATTAAAATTTTAATGA
1 TTTATTTAAATACAAATTAAAA--ATAAAAA
14381285 TTTATTTAAATACAAATTAAAAATAAAAA
1 TTTATTTAAATACAAATTAAAAATAAAAA
* * ** *
14381314 TTTATTTAGATACAAAATAAAAATTTGAAG
1 TTTATTTAAATACAAATTAAAAA-TAAAAA
*
14381344 TTTATTTAAATA-AAA-TAATAATACAAATA
1 TTTATTTAAATACAAATTAAAAATA-AAA-A
*
14381373 TTTATCTAAATA-AAATTATAAAA
1 TTTATTTAAATACAAATTA-AAAA
14381396 ATTAAGATAT
Statistics
Matches: 90, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
27 1 0.01
28 7 0.08
29 42 0.47
30 16 0.18
31 24 0.27
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (29 bp):
TTTATTTAAATACAAATTAAAAATAAAAA
Found at i:14381998 original size:56 final size:55
Alignment explanation
Indices: 14381888--14381998 Score: 159
Period size: 56 Copynumber: 2.0 Consensus size: 55
14381878 TTAATCATGT
**
14381888 TTTAATTGTTAAAATACCCTTTGGGTACTTTGAACTTAGGGACTTTTTTCAATTA
1 TTTAATTGTTAAAATACCCTTTGGGTACTTTGAACTTAAAGACTTTTTTCAATTA
* * * *
14381943 TTTAATTGTTAAGATACCCTTTTGGGTACTTTGAGCTTAAAGATTTTTTTTAATTA
1 TTTAATTGTTAAAATACCC-TTTGGGTACTTTGAACTTAAAGACTTTTTTCAATTA
14381999 AAGTTGTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
55 18 0.37
56 31 0.63
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (55 bp):
TTTAATTGTTAAAATACCCTTTGGGTACTTTGAACTTAAAGACTTTTTTCAATTA
Found at i:14390008 original size:2 final size:2
Alignment explanation
Indices: 14390001--14390028 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14389991 AGTTGAACAG
14390001 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14390029 GAGATGTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14392782 original size:33 final size:33
Alignment explanation
Indices: 14392737--14392800 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
14392727 TTAAGGGCAA
* *
14392737 TATGGTATAGCAAGTAGAAAAAGCCTTGGGTGG
1 TATGGTAGAGCAAGTACAAAAAGCCTTGGGTGG
14392770 TATGGTAGAGCAAGTACAAAAAGCCTTGGGT
1 TATGGTAGAGCAAGTACAAAAAGCCTTGGGT
14392801 CCTGGTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.11, G:0.31, T:0.23
Consensus pattern (33 bp):
TATGGTAGAGCAAGTACAAAAAGCCTTGGGTGG
Found at i:14397720 original size:13 final size:12
Alignment explanation
Indices: 14397715--14397768 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
14397705 TATTAATAAT
14397715 TTATATATTTATA
1 TTATA-ATTTATA
14397728 TTATAAGTTTATA
1 TTATAA-TTTATA
* *
14397741 TAAAAATTATATA
1 TTATAATT-TATA
*
14397754 TTATAATTTGTA
1 TTATAATTTATA
14397766 TTA
1 TTA
14397769 ATATAAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
12 9 0.26
13 25 0.74
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (12 bp):
TTATAATTTATA
Found at i:14397753 original size:21 final size:20
Alignment explanation
Indices: 14397695--14397753 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 20
14397685 TATATTTCTA
14397695 TTATATAAAATATTA-ATAAT
1 TTATATAAAA-ATTATATAAT
* * *
14397715 TTATATATTTATATTATA-AGT
1 TTATATA--AAAATTATATAAT
14397736 TTATATAAAAATTATATA
1 TTATATAAAAATTATATA
14397754 TTATAATTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
19 7 0.23
20 8 0.27
21 13 0.43
22 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TTATATAAAAATTATATAAT
Found at i:14399818 original size:33 final size:35
Alignment explanation
Indices: 14399758--14399851 Score: 115
Period size: 34 Copynumber: 2.8 Consensus size: 35
14399748 CTTTAAAATC
*
14399758 TTTCAAAAATTT-TTTTCT-ACAGATTTT-AAAGGT
1 TTTCAAAAATTTATTTT-TGAAAGATTTTAAAAGGT
14399791 TTTCAAAAATTTATTTTTGAAAG-TTTTAAAAGGT
1 TTTCAAAAATTTATTTTTGAAAGATTTTAAAAGGT
* * *
14399825 TTTTAAAATTTTATTTTTGAAAAATTT
1 TTTCAAAAATTTATTTTTGAAAGATTT
14399852 ATAATTTTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
33 17 0.32
34 33 0.62
35 3 0.06
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (35 bp):
TTTCAAAAATTTATTTTTGAAAGATTTTAAAAGGT
Found at i:14399860 original size:18 final size:16
Alignment explanation
Indices: 14399829--14399869 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
14399819 AAAGGTTTTT
*
14399829 AAAATTTTATTTTTGA
1 AAAATTTTATTTTTAA
14399845 AAAATTTATAATTTTTAA
1 AAAATTT-T-ATTTTTAA
14399863 AAAATTT
1 AAAATTT
14399870 GTTTTCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 1 0.05
18 14 0.64
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
AAAATTTTATTTTTAA
Found at i:14399867 original size:34 final size:34
Alignment explanation
Indices: 14399782--14399883 Score: 95
Period size: 34 Copynumber: 3.1 Consensus size: 34
14399772 TTCTACAGAT
* * **
14399782 TTTAAAGGTTTTCAAAAA-TTTATTTTTGAAAGT
1 TTTAAAAGTTTTTAAAAATTTTATTTTTGAAAAA
14399815 TTTAAAAGGTTTTT-AAAATTTTATTTTTGAAAAA
1 TTTAAAA-GTTTTTAAAAATTTTATTTTTGAAAAA
* * * *
14399849 TTTATAA-TTTTTAAAAAATTT-GTTTTCAAAAA
1 TTTAAAAGTTTTTAAAAATTTTATTTTTGAAAAA
14399881 TTT
1 TTT
14399884 GTGTGAAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
32 17 0.29
33 17 0.29
34 24 0.41
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (34 bp):
TTTAAAAGTTTTTAAAAATTTTATTTTTGAAAAA
Found at i:14400469 original size:29 final size:29
Alignment explanation
Indices: 14400424--14400482 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
14400414 ATTATCTAAT
* *
14400424 AAAATATTTAAATATTA-AAATATTATATA
1 AAAATATTTAAAAATTATAAA-ATTAAATA
14400453 AAAAT-TTTAACAAATTATAAAATTAAATA
1 AAAATATTTAA-AAATTATAAAATTAAATA
14400482 A
1 A
14400483 TTTATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 5 0.19
29 18 0.69
30 3 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (29 bp):
AAAATATTTAAAAATTATAAAATTAAATA
Found at i:14400557 original size:29 final size:29
Alignment explanation
Indices: 14400524--14400591 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
14400514 TTAAATTTTG
* **
14400524 ATTAATTTAATTTTTAATCAAATTAATTA
1 ATTAATTAAATTTTTAAAAAAATTAATTA
** *
14400553 ATTAAACAAATTTTTAAAAAAATTTATTA
1 ATTAATTAAATTTTTAAAAAAATTAATTA
14400582 ATTAATTAAA
1 ATTAATTAAA
14400592 ATTAATTTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (29 bp):
ATTAATTAAATTTTTAAAAAAATTAATTA
Found at i:14403131 original size:2 final size:2
Alignment explanation
Indices: 14403124--14403153 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14403114 CTTTTCTATT
14403124 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14403154 GATAAAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14404464 original size:27 final size:27
Alignment explanation
Indices: 14404426--14404480 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
14404416 GCACATAGTG
14404426 ATATATCGCGTGGTTGTGCTCTTATGA
1 ATATATCGCGTGGTTGTGCTCTTATGA
14404453 ATATATCGCGTGGTTGTGCTCTTATGA
1 ATATATCGCGTGGTTGTGCTCTTATGA
14404480 A
1 A
14404481 GAACATGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40
Consensus pattern (27 bp):
ATATATCGCGTGGTTGTGCTCTTATGA
Found at i:14409273 original size:18 final size:18
Alignment explanation
Indices: 14409250--14409287 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14409240 AGAAACACCG
14409250 TCGTAGAAATAAGCTGTT
1 TCGTAGAAATAAGCTGTT
*
14409268 TCGTAGAAATCAGCTGTT
1 TCGTAGAAATAAGCTGTT
14409286 TC
1 TC
14409288 CCATTTCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (18 bp):
TCGTAGAAATAAGCTGTT
Found at i:14409683 original size:27 final size:30
Alignment explanation
Indices: 14409640--14409703 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 30
14409630 AATCATATTA
* *
14409640 TTTTA-TATATTTATAAAT-AACTTTTTAT
1 TTTTATTATATTTATAAATAAAATTTTAAT
14409668 TTTTATTATA-TT-TAAATAAAATTTTAAT
1 TTTTATTATATTTATAAATAAAATTTTAAT
14409696 TTTTATTA
1 TTTTATTA
14409704 AAACAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 5 0.16
28 23 0.72
29 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTTATTATATTTATAAATAAAATTTTAAT
Found at i:14409711 original size:23 final size:23
Alignment explanation
Indices: 14409676--14409723 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
14409666 ATTTTTATTA
* * * *
14409676 TATTTAAATAAAATTTTAATTTT
1 TATTAAAACAAAAATTTAACTTT
14409699 TATTAAAACAAAAATTTAACTTT
1 TATTAAAACAAAAATTTAACTTT
14409722 TA
1 TA
14409724 ATTTATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
TATTAAAACAAAAATTTAACTTT
Found at i:14409774 original size:29 final size:29
Alignment explanation
Indices: 14409714--14409775 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
14409704 AAACAAAAAT
* *
14409714 TTAACTTTTAATTTATATATAAATAAGTC
1 TTAACTTTTAATTTATACATAAATAACTC
* *
14409743 TTAA-TTTTAATTTATACCTAAATGATCTC
1 TTAACTTTTAATTTATACATAAAT-AACTC
14409772 TTAA
1 TTAA
14409776 AGTAAATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.48
Consensus pattern (29 bp):
TTAACTTTTAATTTATACATAAATAACTC
Found at i:14411410 original size:15 final size:15
Alignment explanation
Indices: 14411390--14411419 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14411380 CAATCAATTT
14411390 TTAAAAAAATAAAAA
1 TTAAAAAAATAAAAA
*
14411405 TTAAAAAATTAAAAA
1 TTAAAAAAATAAAAA
14411420 AAAAAAGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
TTAAAAAAATAAAAA
Found at i:14414717 original size:10 final size:11
Alignment explanation
Indices: 14414690--14414714 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14414680 ACATTGAATT
14414690 AAAATTTTAAA
1 AAAATTTTAAA
14414701 AAAATTTTAAA
1 AAAATTTTAAA
14414712 AAA
1 AAA
14414715 TTTAACACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTTTAAA
Found at i:14420907 original size:20 final size:20
Alignment explanation
Indices: 14420882--14420920 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
14420872 AACCAAAAAA
14420882 ATAATATATATTTTACTTAG
1 ATAATATATATTTTACTTAG
14420902 ATAATATATATTTTACTTA
1 ATAATATATATTTTACTTA
14420921 TATAGTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (20 bp):
ATAATATATATTTTACTTAG
Found at i:14424230 original size:27 final size:27
Alignment explanation
Indices: 14424200--14424260 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
14424190 ATAATTCGAT
*
14424200 TTTAA-TAGAATTAATCAATTGAATTAA
1 TTTAATTAG-ATTAATCAATTCAATTAA
*
14424227 TTTAATTCGATTAATCAATTCAATT-A
1 TTTAATTAGATTAATCAATTCAATTAA
*
14424253 TTAAATTA
1 TTTAATTA
14424261 ATTTTAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.24
27 20 0.69
28 2 0.07
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (27 bp):
TTTAATTAGATTAATCAATTCAATTAA
Found at i:14424332 original size:30 final size:30
Alignment explanation
Indices: 14424266--14424332 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
14424256 AATTAATTTT
** * *
14424266 AATTAATTAATAAATTTTTTTAAAAATTTT
1 AATTAATTAATAAATTTGATTAAAAAATTA
** *
14424296 GTTTAATTAATTAATTTGATTAAAAAATTA
1 AATTAATTAATAAATTTGATTAAAAAATTA
14424326 AATTAAT
1 AATTAAT
14424333 CAAAATTTAA
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (30 bp):
AATTAATTAATAAATTTGATTAAAAAATTA
Found at i:14424486 original size:21 final size:22
Alignment explanation
Indices: 14424462--14424508 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
14424452 ATCTATTTAA
14424462 AATTTAAA-AAATTTAAAATTT
1 AATTTAAATAAATTTAAAATTT
* **
14424483 AATTTAAATATATTTATTATTT
1 AATTTAAATAAATTTAAAATTT
14424505 AATT
1 AATT
14424509 AATCAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATTTAAATAAATTTAAAATTT
Found at i:14425011 original size:18 final size:17
Alignment explanation
Indices: 14424988--14425035 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 17
14424978 ATTTTTGAAA
14424988 ATAAATTTTTAAAAAATT
1 ATAAATTTTTAAAAAA-T
*
14425006 ATAAATTTTTCAAAAAT
1 ATAAATTTTTAAAAAAT
14425023 A-AAA-TTTTAAAAA
1 ATAAATTTTTAAAAA
14425036 CCTTTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 8 0.29
16 3 0.11
17 2 0.07
18 15 0.54
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
ATAAATTTTTAAAAAAT
Found at i:14425051 original size:34 final size:34
Alignment explanation
Indices: 14424985--14425083 Score: 121
Period size: 34 Copynumber: 2.9 Consensus size: 34
14424975 CAAATTTTTG
* * * **
14424985 AAAATAAATTTTTAAAAA-ATTATAAATTTTTCA
1 AAAATAAAATTTTAAAAACCTTTTAAAACTTTCA
14425018 AAAATAAAATTTTAAAAACCTTTTAAAACTTTCA
1 AAAATAAAATTTTAAAAACCTTTTAAAACTTTCA
*
14425052 AAAATAAAATTTTGAAAACC-TTTAAAATCTTT
1 AAAATAAAATTTTAAAAACCTTTTAAAA-CTTT
14425084 AGAAAAATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
33 24 0.41
34 34 0.59
ACGTcount: A:0.53, C:0.08, G:0.01, T:0.38
Consensus pattern (34 bp):
AAAATAAAATTTTAAAAACCTTTTAAAACTTTCA
Found at i:14427490 original size:20 final size:19
Alignment explanation
Indices: 14427439--14427493 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
14427429 ATTATAATAC
14427439 ATAAT-TTTTATATAAAAT
1 ATAATATTTTATATAAAAT
** *
14427457 ATAATATAAATATATAAATT
1 ATAATAT-TTTATATAAAAT
14427477 ATTAATATTTTATATAA
1 A-TAATATTTTATATAA
14427494 TAAAAATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 5 0.17
19 1 0.03
20 17 0.59
21 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATAATATTTTATATAAAAT
Found at i:14429786 original size:11 final size:11
Alignment explanation
Indices: 14429761--14429804 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
14429751 ATTTAATTTT
*
14429761 TTTTATATATTA
1 TTTTA-ATATAA
14429773 TTTTAATATAA
1 TTTTAATATAA
14429784 TTTTAATAT-A
1 TTTTAATATAA
*
14429794 TTTAAATATAA
1 TTTTAATATAA
14429805 AATAATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 9 0.31
11 15 0.52
12 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAATATAA
Found at i:14429795 original size:21 final size:23
Alignment explanation
Indices: 14429761--14429804 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
14429751 ATTTAATTTT
*
14429761 TTTTATATATTATTTTAATATAA
1 TTTTATATATTATTTAAATATAA
14429784 TTTTA-ATA-TATTTAAATATAA
1 TTTTATATATTATTTAAATATAA
14429805 AATAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 3 0.15
23 5 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTTATATATTATTTAAATATAA
Found at i:14434180 original size:20 final size:20
Alignment explanation
Indices: 14434152--14434195 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14434142 TCTTTGAATC
*
14434152 ATATTATTTTATATATTTAT
1 ATATAATTTTATATATTTAT
* *
14434172 ATATAATTTTTTATTTTTAT
1 ATATAATTTTATATATTTAT
14434192 -TATA
1 ATATA
14434196 TTTAAATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
ATATAATTTTATATATTTAT
Found at i:14434207 original size:28 final size:29
Alignment explanation
Indices: 14434158--14434221 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 29
14434148 AATCATATTA
* *
14434158 TTTTA-TATATTTATATATAATTTTTTAT
1 TTTTATTATATTTAAATATAATTTTTAAT
14434186 TTTTATTATATTTAAATA-AATTTTTAAT
1 TTTTATTATATTTAAATATAATTTTTAAT
14434214 TTTTATTA
1 TTTTATTA
14434222 AAACAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 22 0.67
29 11 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (29 bp):
TTTTATTATATTTAAATATAATTTTTAAT
Done.