Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 88 of 121
Found at i:14913345 original size:8 final size:8
Alignment explanation
Indices: 14913332--14913380 Score: 64
Period size: 8 Copynumber: 5.9 Consensus size: 8
14913322 AATTATTAAT
14913332 TTTATATA
1 TTTATATA
14913340 TTTATATA
1 TTTATATA
14913348 TTTATATA
1 TTTATATA
14913356 TTTATATTTAA
1 TTTATA--T-A
14913367 TTT-TATA
1 TTTATATA
14913374 TTTATAT
1 TTTATAT
14913381 TAAAAAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
7 4 0.11
8 26 0.70
10 3 0.08
11 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTATATA
Found at i:14913373 original size:18 final size:18
Alignment explanation
Indices: 14913327--14913381 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
14913317 TTTTTAATTA
14913327 TTAATTTTATATATT-TAT
1 TTAATTTTATAT-TTATAT
*
14913345 AT-ATTTATATATTTATAT
1 TTAATTT-TATATTTATAT
14913363 TTAATTTTATATTTATAT
1 TTAATTTTATATTTATAT
14913381 T
1 T
14913382 AAAAAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 6 0.19
18 22 0.69
19 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTAATTTTATATTTATAT
Found at i:14913412 original size:21 final size:22
Alignment explanation
Indices: 14913366--14913416 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
14913356 TTTATATTTA
14913366 ATTTTATATTTATATTAAAAAAT
1 ATTTTATATTTATA-TAAAAAAT
14913389 ATTTTATATTTA-A-AAAATAAT
1 ATTTTATATTTATATAAAA-AAT
14913410 ATTTTAT
1 ATTTTAT
14913417 TAATTTCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.15
21 10 0.37
22 1 0.04
23 12 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTTATATTTATATAAAAAAT
Found at i:14913419 original size:18 final size:18
Alignment explanation
Indices: 14913351--14913419 Score: 70
Period size: 18 Copynumber: 3.8 Consensus size: 18
14913341 TTATATATTT
* **
14913351 ATATATTTATATTTAATT
1 ATATATTTATATTAAAAA
*
14913369 TTATATTTATATTAAAAA
1 ATATATTTATATTAAAAA
14913387 ATAT-TTTATATTTAAAAA
1 ATATATTTATA-TTAAAAA
14913405 ATAATATTT-TATTAA
1 AT-ATATTTATATTAA
14913420 TTTCGAATCC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 6 0.14
18 30 0.70
19 4 0.09
20 3 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATATTTATATTAAAAA
Found at i:14914135 original size:22 final size:22
Alignment explanation
Indices: 14914088--14914139 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
14914078 AAAATAATTT
* * *
14914088 TAAATTTTAATAAAAATTATATA
1 TAAA-TTTAATAAAAATAAAAAA
14914111 TAAATTTAATAAAAATAAAAAA
1 TAAATTTAATAAAAATAAAAAA
14914133 TAAATTT
1 TAAATTT
14914140 TGTATTGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATTTAATAAAAATAAAAAA
Found at i:14927489 original size:72 final size:73
Alignment explanation
Indices: 14927364--14927576 Score: 206
Period size: 73 Copynumber: 2.9 Consensus size: 73
14927354 AAAATACTAT
* * * *
14927364 TTTTGTTAAAATTTTAGAATTTTGGAAATATAGTTTCAATATCTCATACATTTTTTT-TCTTAAA
1 TTTTGTTAAAATTCTAAAATTTTGAAAATATAGTTTCAACATCTCATACATTTTTTTATCTTAAA
14927428 AACTCAAC
66 AACTCAAC
*
14927436 TTTTGTTAAAATTCTAAAATTTTGAAAATATAGTTTCAGCATCT-ACT-CTATTTTTTTATCTTA
1 TTTTGTTAAAATTCTAAAATTTTGAAAATATAGTTTCAACATCTCA-TAC-ATTTTTTTATCTTA
*
14927499 AAAA-T-ATGAT
64 AAAACTCA--AC
* * * * * * *
14927509 TTTTGTTTAAATTTTGAAATTTTAAAAATTAAAGTTTTAACAT-TCAT-TATGTTTTTTATCTTA
1 TTTTGTTAAAATTCTAAAATTTTGAAAA-TATAGTTTCAACATCTCATACAT-TTTTTTATCTTA
14927572 AAAAC
64 AAAAC
14927577 GCAATACTTG
Statistics
Matches: 118, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
71 3 0.03
72 51 0.43
73 52 0.44
74 12 0.10
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.49
Consensus pattern (73 bp):
TTTTGTTAAAATTCTAAAATTTTGAAAATATAGTTTCAACATCTCATACATTTTTTTATCTTAAA
AACTCAAC
Found at i:14927529 original size:73 final size:71
Alignment explanation
Indices: 14927351--14927575 Score: 228
Period size: 72 Copynumber: 3.1 Consensus size: 71
14927341 TTTATCTTAA
* *
14927351 TTAAAAATACTATTTTTGTTAAAATTTTAGAATTTTGGAAATATAGTTTCAATATCTCATAC-AT
1 TTAAAAATA-TATTTTTGTTAAAATTTTA-AATTTTGAAAATATAGTTTCAACATCTCAT-CTAT
14927415 TTTTTT-TC
63 TTTTTTATC
* * *
14927423 TTAAAAACTCA-ACTTTTGTTAAAATTCTAAAATTTTGAAAATATAGTTTCAGCATCT-ACTCTA
1 TTAAAAA-T-ATATTTTTGTTAAAATT-TTAAATTTTGAAAATATAGTTTCAACATCTCA-TCTA
14927486 TTTTTTTATC
62 TTTTTTTATC
* * * *
14927496 TTAAAAATATGATTTTTGTTTAAATTTTGAAATTTTAAAAATTAAAGTTTTAACAT-TCAT-TAT
1 TTAAAAATAT-ATTTTTGTTAAAATTTT-AAATTTTGAAAA-TATAGTTTCAACATCTCATCTAT
14927559 GTTTTTTATC
63 -TTTTTTATC
14927569 TTAAAAA
1 TTAAAAA
14927576 CGCAATACTT
Statistics
Matches: 129, Mismatches: 12, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
71 3 0.02
72 59 0.46
73 54 0.42
74 13 0.10
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.48
Consensus pattern (71 bp):
TTAAAAATATATTTTTGTTAAAATTTTAAATTTTGAAAATATAGTTTCAACATCTCATCTATTTT
TTTATC
Found at i:14929638 original size:9 final size:8
Alignment explanation
Indices: 14929624--14929671 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
14929614 TTAAAAAGGC
14929624 ATAAAAAA
1 ATAAAAAA
*
14929632 TTAAAAAA
1 ATAAAAAA
*
14929640 ACAAAAATA
1 ATAAAAA-A
14929649 ATAAAAAA
1 ATAAAAAA
*
14929657 ATTAAAAA
1 ATAAAAAA
*
14929665 ACAAAAA
1 ATAAAAA
14929672 GAAAAGAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
8 25 0.78
9 7 0.22
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (8 bp):
ATAAAAAA
Found at i:14929645 original size:25 final size:25
Alignment explanation
Indices: 14929626--14929682 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
14929616 AAAAAGGCAT
*
14929626 AAAAAATTAAAAAAACAAAAATAATA
1 AAAAAATT-AAAAAACAAAAAGAATA
14929652 AAAAAATTAAAAAACAAAAAGAA-A
1 AAAAAATTAAAAAACAAAAAGAATA
*
14929676 AGAAAAT
1 AAAAAAT
14929683 GAAGCTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 7 0.24
25 14 0.48
26 8 0.28
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.12
Consensus pattern (25 bp):
AAAAAATTAAAAAACAAAAAGAATA
Found at i:14929645 original size:26 final size:26
Alignment explanation
Indices: 14929616--14929672 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
14929606 GAATTTATTT
*
14929616 AAAAAGGCAT-AAAAAATTAAAAAAAC
1 AAAAAGGAATAAAAAAATT-AAAAAAC
*
14929642 AAAAA-TAATAAAAAAATTAAAAAAC
1 AAAAAGGAATAAAAAAATTAAAAAAC
14929667 AAAAAG
1 AAAAAG
14929673 AAAAGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 14 0.52
26 13 0.48
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.12
Consensus pattern (26 bp):
AAAAAGGAATAAAAAAATTAAAAAAC
Found at i:14930501 original size:15 final size:17
Alignment explanation
Indices: 14930481--14930516 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
14930471 TTATCTAATT
14930481 TAAAAAAT-AAAAAA-A
1 TAAAAAATGAAAAAACA
14930496 TAAAAAATGAAAAAACA
1 TAAAAAATGAAAAAACA
14930513 TAAA
1 TAAA
14930517 TTGTCACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 6 0.32
17 5 0.26
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.14
Consensus pattern (17 bp):
TAAAAAATGAAAAAACA
Found at i:14931003 original size:16 final size:17
Alignment explanation
Indices: 14930982--14931023 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
14930972 TAACTATTAA
*
14930982 ATAATAATTTTAT-AAT
1 ATAATAATTATATAAAT
*
14930998 ATAATAAATATATAAAT
1 ATAATAATTATATAAAT
14931015 ATAA-AATTA
1 ATAATAATTA
14931024 AAATTGATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATAATAATTATATAAAT
Found at i:14931378 original size:17 final size:19
Alignment explanation
Indices: 14931351--14931385 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14931341 ATGATCTAAT
14931351 TAAAGAAAAAGA-AAAAAC
1 TAAAGAAAAAGATAAAAAC
14931369 TAAA-AAAAAGATAAAAA
1 TAAAGAAAAAGATAAAAA
14931386 GGTCAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.80, C:0.03, G:0.09, T:0.09
Consensus pattern (19 bp):
TAAAGAAAAAGATAAAAAC
Found at i:14932295 original size:19 final size:20
Alignment explanation
Indices: 14932273--14932320 Score: 80
Period size: 19 Copynumber: 2.4 Consensus size: 20
14932263 TTTGAAATTA
14932273 ATAAAATATTATTTTT-AAT
1 ATAAAATATTATTTTTAAAT
14932292 ATAAAATATTATTTTTAAAT
1 ATAAAATATTATTTTTAAAT
14932312 ATAATAATA
1 ATAA-AATA
14932321 ATAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 16 0.59
20 7 0.26
21 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATAAAATATTATTTTTAAAT
Found at i:14932318 original size:3 final size:3
Alignment explanation
Indices: 14932312--14932341 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14932302 ATTTTTAAAT
14932312 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14932342 TATCAGGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14937633 original size:27 final size:27
Alignment explanation
Indices: 14937595--14937653 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
14937585 ATAGATCAAT
14937595 GGTATTGGAGTCGACTCTGGGGCTAAG
1 GGTATTGGAGTCGACTCTGGGGCTAAG
14937622 GGTATTGGAGTCGACTCTGGGGCTAAG
1 GGTATTGGAGTCGACTCTGGGGCTAAG
14937649 GGTAT
1 GGTAT
14937654 CGAGTTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.19, C:0.14, G:0.41, T:0.27
Consensus pattern (27 bp):
GGTATTGGAGTCGACTCTGGGGCTAAG
Found at i:14939490 original size:2 final size:2
Alignment explanation
Indices: 14939477--14939519 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
14939467 GTCAGCGTTT
*
14939477 TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14939519 T
1 T
14939520 ATATATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:14952726 original size:26 final size:29
Alignment explanation
Indices: 14952695--14952761 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
14952685 TGTAAGTATT
14952695 ATATTA-ATTAATAAATTTAT-AA-TTAA
1 ATATTACATTAATAAATTTATAAATTTAA
* *
14952721 ATATTACATTAA-AATTTTTTAAATTTAA
1 ATATTACATTAATAAATTTATAAATTTAA
*
14952749 ATATTATATTAAT
1 ATATTACATTAAT
14952762 TTGGTTTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 12 0.35
27 7 0.21
28 15 0.44
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (29 bp):
ATATTACATTAATAAATTTATAAATTTAA
Found at i:14953874 original size:5 final size:5
Alignment explanation
Indices: 14953864--14953924 Score: 51
Period size: 5 Copynumber: 12.8 Consensus size: 5
14953854 GATAGGCCCA
* *
14953864 TTATT TTA-T TTATT TTATT TTA-T TT-TT GTATT TTATAT TT-TT ATATAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTAT-T TTATT TTAT-T
14953912 TT-TT TTATT TTAT
1 TTATT TTATT TTAT
14953925 ATTTTTTTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
4 14 0.31
5 26 0.58
6 5 0.11
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:14953877 original size:4 final size:4
Alignment explanation
Indices: 14953868--14954101 Score: 81
Period size: 4 Copynumber: 55.8 Consensus size: 4
14953858 GGCCCATTAT
* *
14953868 TTTA TTTA TTTTA TTTTA TTT- TTGTA TTTTA TATT- TTTA TATA TTTT
1 TTTA TTTA -TTTA -TTTA TTTA TT-TA -TTTA T-TTA TTTA TTTA TTTA
* * * * * *
14953915 TTTA TTT- TATA TTTT TTTC TCTTC TTTT TCTTA TGTGTA TCTTA TGTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA T-TTA T-T-TA T-TTA TTTA
*
14953963 TTT- TTTA TTTA TTT- TTTA TTACTA TTTA TTAATA TATA TTTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TT--TA TTTA TTTA TTTA
* * * *
14954008 -TTA TTT- TTTA TTTTA TTTA TCTA TTTA TATA TTATA TATA TGTA TTTA
1 TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA
* * *
14954056 TTAGTA TTTA TCTA TTTA TCTA TTATAA TTTA TCTA -TTA TTTA TTT
1 TT--TA TTTA TTTA TTTA TTTA TT-T-A TTTA TTTA TTTA TTTA TTT
14954102 TCATTTATCT
Statistics
Matches: 176, Mismatches: 29, Indels: 50
0.69 0.11 0.20
Matches are distributed among these distances:
3 23 0.13
4 100 0.57
5 33 0.19
6 20 0.11
ACGTcount: A:0.24, C:0.04, G:0.03, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:14953904 original size:15 final size:14
Alignment explanation
Indices: 14953864--14953931 Score: 74
Period size: 13 Copynumber: 5.1 Consensus size: 14
14953854 GATAGGCCCA
14953864 TTATTTTAT-TTATT
1 TTATTTTATATT-TT
14953878 TTATTTTAT-TTTT
1 TTATTTTATATTTT
*
14953891 GTATTTTATA-TTT
1 TTATTTTATATTTT
*
14953904 TTA-TATAT-TTTT
1 TTATTTTATATTTT
14953916 TTATTTTATATTTT
1 TTATTTTATATTTT
14953930 TT
1 TT
14953932 TCTCTTCTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 10 0.22
13 19 0.41
14 17 0.37
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.78
Consensus pattern (14 bp):
TTATTTTATATTTT
Found at i:14953942 original size:25 final size:25
Alignment explanation
Indices: 14953864--14954023 Score: 75
Period size: 25 Copynumber: 6.4 Consensus size: 25
14953854 GATAGGCCCA
* *
14953864 TTATTTTATTTATTTTATTTTATT-TT
1 TTATTTTATAT-TTTTA-TATATTCTT
*
14953890 TGTATTTTATATTTTTATATATTTTT
1 T-TATTTTATATTTTTATATATTCTT
* * *
14953916 TTATTTTATATTTTTTTCTCTTCTT
1 TTATTTTATATTTTTATATATTCTT
* * *
14953941 TT-TCTTATGTGTATCTTATGTATT-TT
1 TTATTTTATAT-T-T-TTATATATTCTT
*
14953967 TTA-TTTAT-TTTTTATTACTATT-TA
1 TTATTTTATATTTTTA-TA-TATTCTT
* *
14953991 TTAATATATATTTATTAT-TATT-TT
1 TTATTTTATATTT-TTATATATTCTT
14954015 TTATTTTAT
1 TTATTTTAT
14954024 TTATCTATTT
Statistics
Matches: 105, Mismatches: 18, Indels: 24
0.71 0.12 0.16
Matches are distributed among these distances:
22 3 0.03
23 2 0.02
24 27 0.26
25 33 0.31
26 22 0.21
27 18 0.17
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.72
Consensus pattern (25 bp):
TTATTTTATATTTTTATATATTCTT
Found at i:14954013 original size:48 final size:50
Alignment explanation
Indices: 14953956--14954100 Score: 132
Period size: 51 Copynumber: 3.0 Consensus size: 50
14953946 TATGTGTATC
*
14953956 TTATGTATTTTTTATTTATTT-TTTA-TTACTAT-TTAT-TAATATATATTTA
1 TTAT-TATTTTTTATTTATTTATCTATTTA-TATATTATAT-ATATATATTTA
*
14954005 TTATTATTTTTTATTTTATTTATCTATTTATATATTATATATATGTATTTA
1 TTATTATTTTTTA-TTTATTTATCTATTTATATATTATATATATATATTTA
* * *
14954056 TTAGTA---TTTATCTATTTATCTA-TTATA-ATT-TATCTAT-TATTTA
1 TTATTATTTTTTATTTATTTATCTATTTATATATTATATATATATATTTA
14954099 TT
1 TT
14954101 TTCATTTATC
Statistics
Matches: 86, Mismatches: 5, Indels: 16
0.80 0.05 0.15
Matches are distributed among these distances:
43 8 0.09
44 6 0.07
45 3 0.03
46 5 0.06
47 11 0.13
48 13 0.15
49 11 0.13
50 6 0.07
51 22 0.26
52 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (50 bp):
TTATTATTTTTTATTTATTTATCTATTTATATATTATATATATATATTTA
Found at i:14954079 original size:22 final size:21
Alignment explanation
Indices: 14954016--14954124 Score: 84
Period size: 21 Copynumber: 5.3 Consensus size: 21
14954006 TATTATTTTT
* *
14954016 TATTTTATTTATCTATTTATA
1 TATTATATTTATCTATTTATC
* *
14954037 TATTATATATATGTATTTAT-
1 TATTATATTTATCTATTTATC
*
14954057 TA--GTATTTATCTATTTATC
1 TATTATATTTATCTATTTATC
*
14954076 TATTATAATTTATCTA-TTATT
1 TATTAT-ATTTATCTATTTATC
* *
14954097 TATTTTCATTTATCT-GTTATC
1 TATTAT-ATTTATCTATTTATC
14954118 TGATTAT
1 T-ATTAT
14954125 TTTCCTTTTA
Statistics
Matches: 70, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
18 13 0.19
19 2 0.03
20 2 0.03
21 40 0.57
22 13 0.19
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.61
Consensus pattern (21 bp):
TATTATATTTATCTATTTATC
Found at i:14954086 original size:14 final size:14
Alignment explanation
Indices: 14954069--14954095 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14954059 GTATTTATCT
14954069 ATTTATCTATTATA
1 ATTTATCTATTATA
14954083 ATTTATCTATTAT
1 ATTTATCTATTAT
14954096 TTATTTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTTATCTATTATA
Found at i:14954096 original size:39 final size:37
Alignment explanation
Indices: 14954014--14954116 Score: 113
Period size: 39 Copynumber: 2.8 Consensus size: 37
14954004 ATTATTATTT
* *
14954014 TTTATTTTATTTATCTATTTATATATTATATATATGTA
1 TTTA-TTTATTTATCTATTTATCTATTATATATATCTA
*
14954052 TTTATTAGTATTTATCTATTTATCTATTATAATTTATCTA
1 TTTATT--TATTTATCTATTTATCTATTAT-ATATATCTA
*
14954092 -TTATTTATTT-TC-ATTTATCTGTTAT
1 TTTATTTATTTATCTATTTATCTATTAT
14954117 CTGATTATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
35 12 0.21
36 2 0.03
37 7 0.12
38 4 0.07
39 26 0.45
40 7 0.12
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (37 bp):
TTTATTTATTTATCTATTTATCTATTATATATATCTA
Found at i:14954111 original size:43 final size:46
Alignment explanation
Indices: 14953957--14954100 Score: 126
Period size: 47 Copynumber: 3.3 Consensus size: 46
14953947 ATGTGTATCT
* * *
14953957 TATGTATTT-TT--TATTTAT-TTTTTAT-TACTATTTATTAATATA
1 TATGTATTTATTAGTATTTATCTATTTATCTATTATATATT-ATATA
* * * *
14953999 TATTTA-TTATTATTTTTTATTTTATTTATCTATTTATATATTATATA
1 TATGTATTTATTAGTATTTA-TCTATTTATCTA-TTATATATTATATA
*
14954046 TATGTATTTATTAGTATTTATCTATTTATCTATTATA-ATT-TATC
1 TATGTATTTATTAGTATTTATCTATTTATCTATTATATATTATATA
14954090 TAT-TATTTATT
1 TATGTATTTATT
14954101 TTCATTTATC
Statistics
Matches: 84, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 7 0.08
43 8 0.10
44 11 0.13
45 4 0.05
46 11 0.13
47 23 0.27
48 18 0.21
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.65
Consensus pattern (46 bp):
TATGTATTTATTAGTATTTATCTATTTATCTATTATATATTATATA
Found at i:14955017 original size:3 final size:3
Alignment explanation
Indices: 14955009--14955039 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
14954999 TTATATATAC
14955009 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14955040 CAGATTAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14955074 original size:6 final size:6
Alignment explanation
Indices: 14955063--14955151 Score: 69
Period size: 6 Copynumber: 14.5 Consensus size: 6
14955053 TTTAATATTC
*
14955063 TTTTAT TTTTAT CTTTA- TTTTAT TTTTAT TTTTAT GTTACTT-T TCTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT -TT--TTAT T-TTTAT
* *
14955113 TTTTAT TTTCAC TTTTA- TTTTA- TTTTATT ATTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T -TTTTAT TTT
14955152 CTTTAAATAA
Statistics
Matches: 69, Mismatches: 5, Indels: 18
0.75 0.05 0.20
Matches are distributed among these distances:
5 14 0.20
6 40 0.58
7 6 0.09
8 7 0.10
9 2 0.03
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:14955079 original size:23 final size:22
Alignment explanation
Indices: 14955053--14955155 Score: 86
Period size: 23 Copynumber: 4.6 Consensus size: 22
14955043 ATTAGATTTG
*
14955053 TTTAATATTCTTTTATTTTTAT
1 TTTAATTTTCTTTTATTTTTAT
*
14955075 CTTT-ATTTTATTTTTATTTTTAT
1 -TTTAATTTT-CTTTTATTTTTAT
* *
14955098 GTTACTTTTC-TTTATTTTTAT
1 TTTAATTTTCTTTTATTTTTAT
* *
14955119 TTTCACTTTTATTTTATTTTATTAT
1 TTT-AATTTTCTTTTA-TTT-TTAT
14955144 TTT-ATTTTCTTT
1 TTTAATTTTCTTT
14955156 AAATAAAATC
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
21 13 0.20
22 12 0.18
23 30 0.46
24 3 0.05
25 7 0.11
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.75
Consensus pattern (22 bp):
TTTAATTTTCTTTTATTTTTAT
Found at i:14955083 original size:17 final size:17
Alignment explanation
Indices: 14955063--14955151 Score: 78
Period size: 17 Copynumber: 5.2 Consensus size: 17
14955053 TTTAATATTC
14955063 TTTTATTTTTATCTTTA
1 TTTTATTTTTATCTTTA
*
14955080 TTTTATTTTTATTTTTA
1 TTTTATTTTTATCTTTA
* *
14955097 TGTTA-CTTT-TCTTTA
1 TTTTATTTTTATCTTTA
*
14955112 TTTTTATTTTCA-CTTTTA
1 -TTTTATTTTTATC-TTTA
14955130 TTTTATTTTATTAT-TTTA
1 TTTTA-TTT-TTATCTTTA
14955148 TTTT
1 TTTT
14955152 CTTTAAATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
15 5 0.09
16 7 0.12
17 28 0.49
18 15 0.26
19 2 0.04
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATCTTTA
Found at i:14955084 original size:5 final size:5
Alignment explanation
Indices: 14955063--14955151 Score: 67
Period size: 5 Copynumber: 16.8 Consensus size: 5
14955053 TTTAATATTC
* *
14955063 TTTTA TTTTTA TCTTTA TTTTA TTTTTA TTTTTA TGTTA CTTTT- CTTTA
1 TTTTA -TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA
14955112 TTTTTA TTTTCA CTTTTA TTTTA TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
14955152 CTTTAAATAA
Statistics
Matches: 70, Mismatches: 4, Indels: 19
0.75 0.04 0.20
Matches are distributed among these distances:
3 3 0.04
4 3 0.04
5 30 0.43
6 30 0.43
7 4 0.06
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:14955133 original size:27 final size:28
Alignment explanation
Indices: 14955076--14955152 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 28
14955066 TATTTTTATC
* *
14955076 TTTATTTTATTTTTATTTTTATGTTACT
1 TTTACTTTATTTTTATTTTCATGTTACT
*
14955104 TTT-CTTTATTTTTATTTTCACTTTTA-T
1 TTTACTTTATTTTTATTTTCA-TGTTACT
*
14955131 TTTATTTTATTATTTTATTTTC
1 TTTACTTTA-T-TTTTATTTTC
14955153 TTTAAATAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 19 0.46
28 11 0.27
29 1 0.02
30 10 0.24
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.75
Consensus pattern (28 bp):
TTTACTTTATTTTTATTTTCATGTTACT
Found at i:14955143 original size:13 final size:13
Alignment explanation
Indices: 14955127--14955151 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14955117 ATTTTCACTT
14955127 TTATTTTATTTTA
1 TTATTTTATTTTA
14955140 TTATTTTATTTT
1 TTATTTTATTTT
14955152 CTTTAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:14955377 original size:57 final size:57
Alignment explanation
Indices: 14955168--14955787 Score: 699
Period size: 59 Copynumber: 10.7 Consensus size: 57
14955158 ATAAAATCCA
* * * **
14955168 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAGCTTTC
1 AAAAAAAT-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
14955226 CAAAAAATATTTTT-AGGGAAAAGTTGAAAGTAACAATTTTTCTTAAAAATAAATTTTG
1 AAAAAAAT-TTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
14955284 AAAAAAA-GTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
**** * ** * *
14955340 AAAAACGGGTTTTGAGGAAAAGTTGAAAGCATCAATTTTTTTTTAAAATAAACTTTC
1 AAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
14955397 TAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCCTAAAAATAAAATTTC
1 AAAAAAAT-TTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
14955455 AAAAAAGGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTC
1 AAAAAA---ATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
14955515 AGAAAATATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 A-AAAA-AATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* ** *
14955574 AAAAAAAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTACTCGAAATTAAAGTTTTC
1 AAAAAAA--TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
* *
14955634 TAAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAAT-TTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * ** * *
14955692 AAAAAAAGTTTTTGAGGAAAAGTTGAAACTATCAATTTTCCTCGAAATTAAAGTTTC
1 AAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * **
14955749 TAAAAAATATTTTGAAAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
14955788 TCCTGCACAA
Statistics
Matches: 482, Mismatches: 63, Indels: 35
0.83 0.11 0.06
Matches are distributed among these distances:
56 48 0.10
57 125 0.26
58 116 0.24
59 130 0.27
60 55 0.11
61 7 0.01
62 1 0.00
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (57 bp):
AAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:14955555 original size:29 final size:29
Alignment explanation
Indices: 14955464--14955555 Score: 75
Period size: 29 Copynumber: 3.1 Consensus size: 29
14955454 CAAAAAAGGT
14955464 TTTTTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTTTTGAGGAAAAGTTGAAAGTATCAA
* ** *
14955493 TTTTCTTTAAAAATAAATTTTCAGAAA--AT--A
1 TTTT-TTTGAGGA-AAA-GTT--GAAAGTATCAA
14955523 TTTTTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTTTTGAGGAAAAGTTGAAAGTATCAA
14955552 TTTT
1 TTTT
14955556 CCTTAAAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 18
0.64 0.11 0.25
Matches are distributed among these distances:
25 4 0.09
27 4 0.09
28 3 0.07
29 14 0.30
30 10 0.22
31 3 0.07
32 4 0.09
34 4 0.09
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.42
Consensus pattern (29 bp):
TTTTTTTGAGGAAAAGTTGAAAGTATCAA
Found at i:14955791 original size:58 final size:57
Alignment explanation
Indices: 14955169--14955787 Score: 660
Period size: 57 Copynumber: 10.7 Consensus size: 57
14955159 TAAAATCCAA
* * * ** *
14955169 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAGCTTTCC
1 AAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
* * * *
14955227 AAAAAATATTTTTAGGGAAAAGTTGAAAGTAACAATTTTTCTTAAAAATAAATTTT-G
1 AAAAAATATTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
*
14955284 AAAAAA-AGTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-
1 AAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
*** * ** * *
14955340 AAAAACGGGTTTTGAGGAAAAGTTGAAAGCATCAATTTTTTTTTAAAATAAACTTTCT
1 AAAAA-ATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
* *
14955398 AAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCCTAAAAATAAAATTTC-
1 AAAAAATA-TTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
* *
14955455 AAAAAAGGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTC-
1 AAAAAA----TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
* *
14955515 AGAAAATATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
1 A-AAAA-A-TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
* * ** *
14955575 AAAAAAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTACTCGAAATTAAAGTTTTCT
1 AAAAAA--TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTCT
* *
14955635 AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCA
1 AAAAAATA-TTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
* ** * *
14955693 AAAAAAGT-TTTTGAGGAAAAGTTGAAACTATCAATTTTCCTCGAAATTAAAGTTTCT
1 AAAAAA-TATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
**
14955750 AAAAAATATTTTGAAAAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTT
14955788 TCCTGCACAA
Statistics
Matches: 483, Mismatches: 55, Indels: 47
0.83 0.09 0.08
Matches are distributed among these distances:
56 46 0.10
57 138 0.29
58 102 0.21
59 134 0.28
60 55 0.11
61 7 0.01
62 1 0.00
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCT
Found at i:14973916 original size:13 final size:13
Alignment explanation
Indices: 14973859--14973909 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
14973849 TTGAAATAAT
14973859 AAAAAAAA-T-AA
1 AAAAAAAAGTGAA
14973870 AAAAATGAAA-TGAA
1 AAAAA--AAAGTGAA
*
14973884 AATAAAAAGTGAA
1 AAAAAAAAGTGAA
14973897 AAAAAAAAGTGAA
1 AAAAAAAAGTGAA
14973910 TGAAAAAGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 5 0.15
12 3 0.09
13 20 0.59
14 6 0.18
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (13 bp):
AAAAAAAAGTGAA
Found at i:14975007 original size:85 final size:85
Alignment explanation
Indices: 14974903--14975281 Score: 332
Period size: 85 Copynumber: 4.5 Consensus size: 85
14974893 ACAAGCCATG
*
14974903 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATTCATTTTCAAAGTCGTTGAGC
1 TATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCC-TTTATTCATTTTCAAAGTCGTTGAGC
*
14974968 CTTTGATTAGAGGAGC-CATT
65 CTCTGATTAGAGGAGCTCATT
* * *
14974988 TATTTTTCAAATTCATTGAGCCTCTGATTAGAGGAGCCTTGT-TT-ATCTTTCCAAACTCGTTCA
1 TATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCTT-TATTCAT-TTT-CAAAGTCGTTGA
* * **
14975051 GCCTCTGATTAAAGGGGCTTTGTT
63 GCCTCTGATTAGAGGAGC-TCATT
* * * *
14975075 TATCTTTCCAAAGTCATTGAGCCTCTGATTAGAGGAG-CTTTATTTATTTTTCAAAGTCATTGGG
1 TAT-TTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCTTTATTCA-TTTTCAAAGTCGTTGAG
*** *
14975139 CCTCTGATTTTTGGAGCTTTATT
64 CCTCTGATTAGAGGAGC-TCATT
* * * *
14975162 TATTTTTCAAAGTCGTTGAG---C----TAGAGGA-ACTTTATTCATTTTCAAAATCGTTAAGCC
1 TATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCTTTATTCATTTTCAAAGTCGTTGAGCC
**
14975219 TCTGATTAGAGGAGCATTGTT
66 TCTGATTAGAGGAGC-TCATT
* * * *
14975240 TATGTTTTTCAAAGTCGTTGAGCTTCTGCTTAGAGGAACCTT
1 TA--TTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCTT
14975282 GATCAAATCT
Statistics
Matches: 241, Mismatches: 33, Indels: 37
0.77 0.11 0.12
Matches are distributed among these distances:
78 33 0.14
79 15 0.06
80 18 0.07
83 4 0.02
84 7 0.03
85 62 0.26
86 16 0.07
87 47 0.20
88 38 0.16
89 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.40
Consensus pattern (85 bp):
TATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCTTTATTCATTTTCAAAGTCGTTGAGCC
TCTGATTAGAGGAGCTCATT
Found at i:14975144 original size:43 final size:43
Alignment explanation
Indices: 14974903--14975276 Score: 365
Period size: 44 Copynumber: 8.8 Consensus size: 43
14974893 ACAAGCCATG
14974903 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
1 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG-C-TTTATT
* * *
14974948 CA-TTTTCAAAGTCGTTGAGCCTTTGATTAGAGGAGC--CATT
1 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
* * * *
14974988 TATTTTTCAAATTCATTGAGCCTCTGATTAGAGGAGCCTTGTT
1 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
* * * * * *
14975031 TATCTTTCCAAACTCGTTCAGCCTCTGATTAAAGGGGCTTTGTT
1 TAT-TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
* *
14975075 TATCTTTCCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTATT
1 TAT-TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
* * ***
14975119 TATTTTTCAAAGTCATTGGGCCTCTGATTTTTGGAGCTTTATT
1 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
*
14975162 TATTTTTCAAAGTCGTTGAG---C----TAGAGGAACTTTATT
1 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
* * * * *
14975198 CA-TTTTCAAAATCGTTAAGCCTCTGATTAGAGGAGCATTGTT
1 TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
* *
14975240 TATGTTTTTCAAAGTCGTTGAGCTTCTGCTTAGAGGA
1 TA--TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGA
14975277 ACCTTGATCA
Statistics
Matches: 271, Mismatches: 44, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
35 15 0.06
36 12 0.04
38 1 0.00
40 5 0.02
41 31 0.11
42 13 0.05
43 59 0.22
44 106 0.39
45 29 0.11
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (43 bp):
TATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATT
Found at i:14975242 original size:78 final size:80
Alignment explanation
Indices: 14975104--14975263 Score: 198
Period size: 78 Copynumber: 2.0 Consensus size: 80
14975094 AGCCTCTGAT
* * * ** *** *
14975104 TAGAGGAGCTTTATTTATTTTTCAAAGTCATTGGGCCTCTGATTTTTGGAGCTTTATTTA-TTTT
1 TAGAGGAACTTTATTCATTTTTCAAAATCATTAAGCCTCTGATTAGAGGAGCATTATTTAGTTTT
14975168 TCAAAGTCGTTGAGC
66 TCAAAGTCGTTGAGC
* *
14975183 TAGAGGAACTTTATTCA-TTTTCAAAATCGTTAAGCCTCTGATTAGAGGAGCATTGTTTATGTTT
1 TAGAGGAACTTTATTCATTTTTCAAAATCATTAAGCCTCTGATTAGAGGAGCATTATTTA-GTTT
14975247 TTCAAAGTCGTTGAGC
65 TTCAAAGTCGTTGAGC
14975263 T
1 T
14975264 TCTGCTTAGA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
78 33 0.49
79 15 0.22
80 20 0.29
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (80 bp):
TAGAGGAACTTTATTCATTTTTCAAAATCATTAAGCCTCTGATTAGAGGAGCATTATTTAGTTTT
TCAAAGTCGTTGAGC
Found at i:14975475 original size:13 final size:13
Alignment explanation
Indices: 14975457--14975518 Score: 67
Period size: 12 Copynumber: 4.8 Consensus size: 13
14975447 GGTAAGCCTA
14975457 TTATTTTTTTATT
1 TTATTTTTTTATT
14975470 TTA-TTTTTTATT
1 TTATTTTTTTATT
*
14975482 TTATATTTCTATATT
1 TTAT-TTT-TTTATT
14975497 TTA--TTTTTATT
1 TTATTTTTTTATT
14975508 TTATATTTTTT
1 TTAT-TTTTTT
14975519 CTCTTCTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
11 8 0.20
12 14 0.34
13 3 0.07
14 8 0.20
15 8 0.20
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (13 bp):
TTATTTTTTTATT
Found at i:14975478 original size:7 final size:7
Alignment explanation
Indices: 14975457--14975518 Score: 58
Period size: 7 Copynumber: 9.3 Consensus size: 7
14975447 GGTAAGCCTA
14975457 TTATTTT
1 TTATTTT
*
14975464 TT-TATT
1 TTATTTT
14975470 TTATTTT
1 TTATTTT
14975477 TTATTTT
1 TTATTTT
*
14975484 ATA-TTT
1 TTATTTT
* *
14975490 CTATATT
1 TTATTTT
14975497 TTA-TTT
1 TTATTTT
14975503 TTATTTT
1 TTATTTT
*
14975510 ATATTTT
1 TTATTTT
14975517 TT
1 TT
14975519 CTCTTCTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
6 15 0.35
7 28 0.65
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (7 bp):
TTATTTT
Found at i:14975482 original size:20 final size:19
Alignment explanation
Indices: 14975461--14975517 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
14975451 AGCCTATTAT
14975461 TTTTTTATTTTATTTTTTA
1 TTTTTTATTTTATTTTTTA
* *
14975480 TTTTATATTTCTATATTTTA
1 TTTTTTATTT-TATTTTTTA
14975500 -TTTTTATTTTATATTTTT
1 TTTTTTATTTTAT-TTTTT
14975518 TCTCTTCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 3 0.09
19 21 0.66
20 8 0.25
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTATTTTATTTTTTA
Found at i:14975558 original size:4 final size:4
Alignment explanation
Indices: 14975549--14975689 Score: 53
Period size: 4 Copynumber: 34.5 Consensus size: 4
14975539 GTCTTATGTA
* *
14975549 TTAT TTAT TTA- TTAT TTAT TACTAT TTAT TAATAA ATAT TTA- TTA-
1 TTAT TTAT TTAT TTAT TTAT T--TAT TTAT T--TAT TTAT TTAT TTAT
* * * *
14975594 TTA- TTA- TTATT TTAT TTAT CTAT TTAT ATA- TTAT TATAT ATAT GTAT
1 TTAT TTAT TTA-T TTAT TTAT TTAT TTAT TTAT TTAT T-TAT TTAT TTAT
* * * *
14975641 TTAT TAGTAT TTCT CTAT TTAT ATAT TATAAT TTAT CTA- TTAT TTAT
1 TTAT T--TAT TTAT TTAT TTAT TTAT T-T-AT TTAT TTAT TTAT TTAT
14975688 TT
1 TT
14975690 TCATTTATCT
Statistics
Matches: 104, Mismatches: 19, Indels: 28
0.69 0.13 0.19
Matches are distributed among these distances:
3 19 0.18
4 64 0.62
5 8 0.08
6 13 0.12
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (4 bp):
TTAT
Found at i:14975763 original size:16 final size:15
Alignment explanation
Indices: 14975742--14975771 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14975732 TAATATATAT
14975742 TTTTTATTTTATTTTA
1 TTTTTATTTT-TTTTA
14975758 TTTTTATTTTTTTT
1 TTTTTATTTTTTTT
14975772 CGACTGGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTATTTTTTTTA
Found at i:14976319 original size:21 final size:21
Alignment explanation
Indices: 14976269--14976320 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 21
14976259 TTCAGATTTT
*
14976269 AGAGAGAAG-GGAGAGAAAAA
1 AGAGAGAAGAAGAGAGAAAAA
* *
14976289 AGA-AG-GGAAGAGAGAGAAA
1 AGAGAGAAGAAGAGAGAAAAA
14976308 AGAGAGAAGAAGA
1 AGAGAGAAGAAGA
14976321 TAAGGGATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 5 0.20
21 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (21 bp):
AGAGAGAAGAAGAGAGAAAAA
Found at i:14976611 original size:17 final size:16
Alignment explanation
Indices: 14976594--14976677 Score: 89
Period size: 17 Copynumber: 4.9 Consensus size: 16
14976584 TTTAATATTC
*
14976594 TTTTATTTTTATCTTTC
1 TTTTATTTTTAT-TTTA
14976611 TTTTATTTTTATTTTTA
1 TTTTATTTTTA-TTTTA
14976628 TTTTACTTTTT-TTTTA
1 TTTTA-TTTTTATTTTA
*
14976644 TTTTCACTTTTATTTTA
1 TTTT-ATTTTTATTTTA
14976661 TTTTATTATTTTATTTT
1 TTTTA-T-TTTTATTTT
14976678 CTTTAAATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
16 14 0.24
17 29 0.50
18 15 0.26
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:14976619 original size:5 final size:5
Alignment explanation
Indices: 14976594--14976677 Score: 73
Period size: 5 Copynumber: 15.8 Consensus size: 5
14976584 TTTAATATTC
* *
14976594 TTTTA TTTTTA TCTTTC TTTTA TTTTTA TTTTTA TTTTA CTTTTT TTTTA
1 TTTTA -TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA
14976644 TTTTCA CTTTTA TTTTA TTTTA --TTA TTTTA TTTT
1 TTTT-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
14976678 CTTTAAATAA
Statistics
Matches: 67, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
3 3 0.04
5 34 0.51
6 26 0.39
7 4 0.06
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:14976621 original size:23 final size:22
Alignment explanation
Indices: 14976594--14976681 Score: 99
Period size: 23 Copynumber: 3.9 Consensus size: 22
14976584 TTTAATATTC
14976594 TTTTATTTTTATCTTTCTTTTAT
1 TTTTATTTTTAT-TTTCTTTTAT
14976617 TTTTATTTTTATTTTACTTTT-T
1 TTTTATTTTTATTTT-CTTTTAT
* *
14976639 TTTTATTTTCACTTTTATTTTA-
1 TTTTATTTTTA-TTTTCTTTTAT
14976661 TTTTATTATTTTATTTTCTTT
1 TTTTA-T-TTTTATTTTCTTT
14976682 AAATAAAATC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
22 23 0.41
23 29 0.52
24 4 0.07
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTATTTTTATTTTCTTTTAT
Found at i:14976654 original size:13 final size:12
Alignment explanation
Indices: 14976594--14976681 Score: 59
Period size: 11 Copynumber: 7.8 Consensus size: 12
14976584 TTTAATATTC
14976594 TTTTA-TTTTTA
1 TTTTACTTTTTA
14976605 TCTTT-C-TTTTA
1 T-TTTACTTTTTA
14976616 TTTTTA-TTTTTA
1 -TTTTACTTTTTA
14976628 TTTTACTTTTT-
1 TTTTACTTTTTA
*
14976639 TTTTA-TTTTCA
1 TTTTACTTTTTA
14976650 CTTTTA--TTTTA
1 -TTTTACTTTTTA
*
14976661 TTTTATTATTTTA
1 TTTTACT-TTTTA
14976674 TTTT-CTTT
1 TTTTACTTT
14976682 AAATAAAATC
Statistics
Matches: 63, Mismatches: 3, Indels: 22
0.72 0.03 0.25
Matches are distributed among these distances:
10 9 0.14
11 25 0.40
12 20 0.32
13 9 0.14
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTACTTTTTA
Found at i:14976681 original size:28 final size:27
Alignment explanation
Indices: 14976593--14976681 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 27
14976583 GTTTAATATT
*
14976593 CTTTTATTTTTA-TCTTTCTTTTATTTTTA
1 CTTTTA-TTTTACT-TTTTTTTTA-TTTTA
*
14976622 TTTTTATTTTACTTTTTTTTTATTTTCA
1 CTTTTATTTTACTTTTTTTTTATTTT-A
*
14976650 CTTTTATTTTATTTTATTATTTTATTTT-
1 CTTTTATTTTACTTT-TT-TTTTATTTTA
14976678 CTTT
1 CTTT
14976682 AAATAAAATC
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 4 0.08
28 31 0.60
29 8 0.15
30 9 0.17
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.78
Consensus pattern (27 bp):
CTTTTATTTTACTTTTTTTTTATTTTA
Found at i:14976820 original size:62 final size:60
Alignment explanation
Indices: 14976724--14976905 Score: 183
Period size: 62 Copynumber: 3.0 Consensus size: 60
14976714 AAAGTTGAAA
* * * *
14976724 GTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGGTTTTTTTAGGAAAAATTAAAAGTAT
1 GTATCAATTTTCCTCAAAATTAAAGTTTCCAAAAA--TTTTTTTAGGAAAAATTAAAAGTAT
* *
14976786 GTATCAATTTTCCTCAAAATTAAAGTTTCCAAAAAAATATTTTTTAGGAAAAGTT-GAA--A-
1 GTATCAATTTTCCTCAAAATTAAAGTTTCC--AAAAAT-TTTTTTAGGAAAAATTAAAAGTAT
* * * * *
14976845 GTATCAATTTTTCTCGAAATTAAAGTTTCCAAAAAATATTTTGGGAAAAAGTTAAAAGTAT
1 GTATCAATTTTCCTCAAAATTAAAGTTTCCAAAAATTTTTTTAGGAAAAA-TTAAAAGTAT
14976906 CAATTTTTCT
Statistics
Matches: 99, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
56 11 0.11
57 7 0.07
58 2 0.02
59 28 0.28
60 2 0.02
62 29 0.29
63 15 0.15
64 5 0.05
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (60 bp):
GTATCAATTTTCCTCAAAATTAAAGTTTCCAAAAATTTTTTTAGGAAAAATTAAAAGTAT
Found at i:14976876 original size:59 final size:59
Alignment explanation
Indices: 14976694--14976912 Score: 232
Period size: 59 Copynumber: 3.7 Consensus size: 59
14976684 ATAAAATCCA
** * * * *
14976694 AAAAAAATTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
1 AAAAAAA-TATTTTTTAGGAAAAGTTAAAAGTATCAATTTTCCTCAAAATTAAAGTTTCC
* *
14976753 AAAAAAGGT-TTTTTTAGGAAAAATTAAAAGTATGTATCAATTTTCCTCAAAATTAAAGTTTCC
1 AAAAAA-ATATTTTTTAGGAAAAGTT-AAA--A-GTATCAATTTTCCTCAAAATTAAAGTTTCC
* * *
14976816 AAAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCC
1 AAAAAAATATTTTTTAGGAAAAGTTAAAAGTATCAATTTTCCTCAAAATTAAAGTTTCC
*
14976875 -AAAAAATA--TTTTGGGAAAAAGTTAAAAGTATCAATTTT
1 AAAAAAATATTTTTTAGG-AAAAGTTAAAAGTATCAATTTT
14976913 TCTTGTACAA
Statistics
Matches: 137, Mismatches: 15, Indels: 18
0.81 0.09 0.11
Matches are distributed among these distances:
56 6 0.04
57 21 0.15
58 21 0.15
59 37 0.27
60 1 0.01
61 1 0.01
62 25 0.18
63 25 0.18
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (59 bp):
AAAAAAATATTTTTTAGGAAAAGTTAAAAGTATCAATTTTCCTCAAAATTAAAGTTTCC
Found at i:14979437 original size:21 final size:21
Alignment explanation
Indices: 14979399--14979439 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14979389 ATGTAATATT
*
14979399 TTTAAAAATCAAATAAATAAG
1 TTTAAAAATCAAAAAAATAAG
14979420 TTTAAAAAT-ATAAAAAATAA
1 TTTAAAAATCA-AAAAAATAA
14979440 TATCATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (21 bp):
TTTAAAAATCAAAAAAATAAG
Found at i:14980296 original size:1 final size:1
Alignment explanation
Indices: 14980290--14980337 Score: 60
Period size: 1 Copynumber: 48.0 Consensus size: 1
14980280 AACCCATCAT
* ** *
14980290 AAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAGTAAAAAAATAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14980338 GGGGAAAGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.92, C:0.02, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:14986129 original size:25 final size:26
Alignment explanation
Indices: 14986096--14986144 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
14986086 AAATAATTGA
14986096 ATATATTTTTAGT-CA-TTATTTAAAT
1 ATATATTTTTA-TCCATTTATTTAAAT
*
14986121 ATATGTTTTTATCCATTTATTTAA
1 ATATATTTTTATCCATTTATTTAA
14986145 CTAAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 12 0.57
26 8 0.38
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
ATATATTTTTATCCATTTATTTAAAT
Found at i:14986465 original size:17 final size:17
Alignment explanation
Indices: 14986443--14986475 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14986433 AAATCTTATC
14986443 AAATA-TATATTATAATA
1 AAATATTATA-TATAATA
14986460 AAATATTATATATAAT
1 AAATATTATATATAAT
14986476 TATAAACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATATTATATATAATA
Found at i:14989735 original size:18 final size:18
Alignment explanation
Indices: 14989677--14989760 Score: 62
Period size: 19 Copynumber: 4.5 Consensus size: 18
14989667 TAGGAAATTG
*
14989677 ATTTTTGAAGTTTGTGGGA
1 ATTTTTGGAGTTT-TGGGA
* *
14989696 ATTTGTGGA-TTTTGGAAA
1 ATTTTTGGAGTTTTGG-GA
*
14989714 ATTTTTGGAGTTTTGGGC
1 ATTTTTGGAGTTTTGGGA
* * *
14989732 ATTTTCTAGACTTTTTTGGA
1 ATTTT-TGGA-GTTTTGGGA
14989752 ATTTTTGGA
1 ATTTTTGGA
14989761 ATTATGTTAG
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
17 3 0.06
18 17 0.34
19 19 0.38
20 11 0.22
ACGTcount: A:0.20, C:0.04, G:0.26, T:0.50
Consensus pattern (18 bp):
ATTTTTGGAGTTTTGGGA
Found at i:14989758 original size:9 final size:9
Alignment explanation
Indices: 14989744--14989786 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
14989734 TTTCTAGACT
14989744 TTTTTGGAA
1 TTTTTGGAA
14989753 TTTTTGGAA
1 TTTTTGGAA
*
14989762 TTATGTTAGAA
1 TT-T-TTGGAA
*
14989773 TTTTTGAAA
1 TTTTTGGAA
14989782 TTTTT
1 TTTTT
14989787 TATTAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 20 0.69
10 2 0.07
11 7 0.24
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (9 bp):
TTTTTGGAA
Found at i:14990296 original size:4 final size:4
Alignment explanation
Indices: 14990284--14990362 Score: 58
Period size: 4 Copynumber: 20.2 Consensus size: 4
14990274 TAGTATTTTT
* * *
14990284 TTTA ATTA TTTA TTTA TGTTAA ATTA TTTA TTTA TTTA -TT- TTTA TTGA
1 TTTA TTTA TTTA TTTA T-TT-A TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
14990332 TTTG TTTA ATTG TTTA TTTA -TT- TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
14990363 AAATACATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
3 8 0.14
4 44 0.77
5 4 0.07
6 1 0.02
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:14990360 original size:26 final size:26
Alignment explanation
Indices: 14990284--14990362 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
14990274 TAGTATTTTT
* *
14990284 TTTAATTATTTATTTATGTTAAATTA
1 TTTAATTATTTATTTATTTTAATTTA
* * *
14990310 TTTATTTATTTATTT-TTATTGATTTG
1 TTTAATTATTTATTTATT-TTAATTTA
* *
14990336 TTTAATTGTTTATTTATTTTTATTTA
1 TTTAATTATTTATTTATTTTAATTTA
14990362 T
1 T
14990363 AAATACATAT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
25 1 0.02
26 39 0.93
27 2 0.05
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (26 bp):
TTTAATTATTTATTTATTTTAATTTA
Found at i:14990720 original size:37 final size:38
Alignment explanation
Indices: 14990652--14990723 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
14990642 ATTTTTTCAT
* ** *
14990652 AAAATCCTACCAACATATTGGAGGATAATTTTTGAAAA
1 AAAATCCTACAAACATATTAAAAGATAATTTTTGAAAA
*
14990690 AAAATCGTACAAACATATTAAAAGAT-ATTTTTGA
1 AAAATCCTACAAACATATTAAAAGATAATTTTTGA
14990724 CAATAAACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 8 0.28
38 21 0.72
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (38 bp):
AAAATCCTACAAACATATTAAAAGATAATTTTTGAAAA
Found at i:14992574 original size:22 final size:22
Alignment explanation
Indices: 14992542--14992620 Score: 97
Period size: 22 Copynumber: 3.6 Consensus size: 22
14992532 ATTTCTTTTA
*
14992542 TTTAGGGTTTTGGCTTTGAGAG
1 TTTAGGATTTTGGCTTTGAGAG
*
14992564 TTTGGGATTTTGGCTTTGAGAG
1 TTTAGGATTTTGGCTTTGAGAG
* * *
14992586 TTTAGGATTTTGGATTTTAGGAT
1 TTTAGGATTTTGGCTTTGA-GAG
14992609 TTTA-GATTTTGG
1 TTTAGGATTTTGG
14992621 ATTTTAGGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
22 44 0.88
23 6 0.12
ACGTcount: A:0.16, C:0.03, G:0.32, T:0.49
Consensus pattern (22 bp):
TTTAGGATTTTGGCTTTGAGAG
Found at i:14992602 original size:7 final size:7
Alignment explanation
Indices: 14992568--14992638 Score: 72
Period size: 7 Copynumber: 9.7 Consensus size: 7
14992558 TGAGAGTTTG
14992568 GGATTTT
1 GGATTTT
*
14992575 GG-CTTT
1 GGATTTT
*
14992581 GAGAGTTTA
1 G-GA-TTTT
14992590 GGATTTT
1 GGATTTT
14992597 GGATTTT
1 GGATTTT
14992604 AGGATTTT
1 -GGATTTT
*
14992612 AGATTTT
1 GGATTTT
14992619 GGATTTT
1 GGATTTT
14992626 AGGATTTT
1 -GGATTTT
14992634 GGATT
1 GGATT
14992639 AAGGGTTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
6 4 0.08
7 30 0.57
8 16 0.30
9 3 0.06
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.51
Consensus pattern (7 bp):
GGATTTT
Found at i:14992606 original size:15 final size:15
Alignment explanation
Indices: 14992590--14992638 Score: 75
Period size: 15 Copynumber: 3.3 Consensus size: 15
14992580 TGAGAGTTTA
14992590 GGATTTT-GGATTTT
1 GGATTTTAGGATTTT
14992604 AGGATTTTA-GATTTT
1 -GGATTTTAGGATTTT
14992619 GGATTTTAGGATTTT
1 GGATTTTAGGATTTT
14992634 GGATT
1 GGATT
14992639 AAGGGTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.25
15 24 0.75
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (15 bp):
GGATTTTAGGATTTT
Found at i:14992621 original size:22 final size:22
Alignment explanation
Indices: 14992569--14992638 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 22
14992559 GAGAGTTTGG
* * *
14992569 GATTTTGGCTTTGA-GAGTTTA
1 GATTTTGGATTTTAGGATTTTA
14992590 GGATTTTGGATTTTAGGATTTTA
1 -GATTTTGGATTTTAGGATTTTA
*
14992613 GATTTTGGATTTTAGGATTTTG
1 GATTTTGGATTTTAGGATTTTA
14992635 GATT
1 GATT
14992639 AAGGGTTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 37 0.86
23 6 0.14
ACGTcount: A:0.20, C:0.01, G:0.27, T:0.51
Consensus pattern (22 bp):
GATTTTGGATTTTAGGATTTTA
Found at i:14992647 original size:22 final size:22
Alignment explanation
Indices: 14992597--14992654 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
14992587 TTAGGATTTT
**
14992597 GGATTTTAGGATTTTAGATTTT
1 GGATTTTAGGATTTTAGATTAA
*
14992619 GGATTTTAGGATTTTGGATTAA
1 GGATTTTAGGATTTTAGATTAA
*
14992641 GGGTTTT--GATTTTA
1 GGATTTTAGGATTTTA
14992655 AGGTTCGGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 6 0.19
22 25 0.81
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (22 bp):
GGATTTTAGGATTTTAGATTAA
Found at i:14992696 original size:13 final size:14
Alignment explanation
Indices: 14992680--14992780 Score: 50
Period size: 13 Copynumber: 7.2 Consensus size: 14
14992670 AAGGTTTCAA
14992680 TTTAGGGTTTT-AG
1 TTTAGGGTTTTGAG
*
14992693 TTTAGTGGTTTTGAT
1 TTTAG-GGTTTTGAG
* *
14992708 TTTAGGG-TTAGGG
1 TTTAGGGTTTTGAG
* * *
14992721 TTTTAGTGTCTTGAT
1 -TTTAGGGTTTTGAG
*
14992736 TTTA-GGTTTCGAAAG
1 TTTAGGGTTTTG--AG
*
14992751 TTTTAGGGTTTT-AA
1 -TTTAGGGTTTTGAG
14992765 TTTAGGGTTTTG-G
1 TTTAGGGTTTTGAG
14992778 TTT
1 TTT
14992781 TGGGGTTTCA
Statistics
Matches: 63, Mismatches: 16, Indels: 18
0.65 0.16 0.19
Matches are distributed among these distances:
13 26 0.41
14 19 0.30
15 9 0.14
16 4 0.06
17 5 0.08
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (14 bp):
TTTAGGGTTTTGAG
Found at i:14992716 original size:14 final size:14
Alignment explanation
Indices: 14992606--14992800 Score: 78
Period size: 14 Copynumber: 13.8 Consensus size: 14
14992596 TGGATTTTAG
*
14992606 GATTTTA-GATTTT
1 GATTTTAGGGTTTT
*
14992619 GGATTTTAGGATTTT
1 -GATTTTAGGGTTTT
*
14992634 GGA-TTAAGGGTTTT
1 -GATTTTAGGGTTTT
* **
14992648 GATTTTAAGGTTCG
1 GATTTTAGGGTTTT
* *
14992662 GAGGTGTTAAGG-TTT
1 GA--TTTTAGGGTTTT
* *
14992677 CAATTTAGGGTTTT
1 GATTTTAGGGTTTT
*
14992691 -AGTTTAGTGGTTTT
1 GATTTTAG-GGTTTT
**
14992705 GATTTTAGGGTTAG
1 GATTTTAGGGTTTT
* * *
14992719 GGTTTTAGTGTCTT
1 GATTTTAGGGTTTT
*
14992733 GATTTTA-GGTTTC
1 GATTTTAGGGTTTT
14992746 GAAAGTTTTAGGGTTTT
1 G--A-TTTTAGGGTTTT
*
14992763 -AATTTAGGGTTTT
1 GATTTTAGGGTTTT
* * *
14992776 GGTTTTGGGGTTTC
1 GATTTTAGGGTTTT
*
14992790 AATTTTAGGGT
1 GATTTTAGGGT
14992801 AAGGGTTTTA
Statistics
Matches: 134, Mismatches: 35, Indels: 24
0.69 0.18 0.12
Matches are distributed among these distances:
13 28 0.21
14 71 0.53
15 18 0.13
16 12 0.09
17 5 0.04
ACGTcount: A:0.18, C:0.03, G:0.29, T:0.50
Consensus pattern (14 bp):
GATTTTAGGGTTTT
Found at i:14992735 original size:85 final size:85
Alignment explanation
Indices: 14992646--14992810 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
14992636 ATTAAGGGTT
* * * **
14992646 TTGATTTTAAGG-TTCGGAGGTGTTAAGGTTTCAATTTAGGGTTTTAGTTTAGTGGTTTTGATTT
1 TTGATTTT-AGGTTTCGAAAGTGTTAAGGTTTCAATTTAGGGTTTTAGTTTAGGGGTTTCAATTT
*
14992710 TAGGGTTAGGGTTTTAGTGTC
65 TAGGGTAAGGGTTTTAGTGTC
* * * * *
14992731 TTGATTTTAGGTTTCGAAAGTTTTAGGGTTTTAATTTAGGGTTTTGGTTTTGGGGTTTCAATTTT
1 TTGATTTTAGGTTTCGAAAGTGTTAAGGTTTCAATTTAGGGTTTTAGTTTAGGGGTTTCAATTTT
14992796 AGGGTAAGGGTTTTA
66 AGGGTAAGGGTTTTA
14992811 AGGTTTTAAC
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
84 3 0.04
85 65 0.96
ACGTcount: A:0.18, C:0.03, G:0.30, T:0.49
Consensus pattern (85 bp):
TTGATTTTAGGTTTCGAAAGTGTTAAGGTTTCAATTTAGGGTTTTAGTTTAGGGGTTTCAATTTT
AGGGTAAGGGTTTTAGTGTC
Found at i:14992890 original size:30 final size:29
Alignment explanation
Indices: 14992828--14992951 Score: 122
Period size: 30 Copynumber: 4.2 Consensus size: 29
14992818 AACTTCAGAA
* * **
14992828 TTTATAGGGTTTTAGGGTTTAATTTTAAGG
1 TTTAGAGGG-TTTAGGATTTAATTTTGGGG
* *
14992858 TTTGGAGGGTTTAGGATTTCAACTTTGGGG
1 TTTAGAGGGTTTAGGATTT-AATTTTGGGG
* *
14992888 TTTAGAGGGTTTTAGGATTTAGTTTTTGGG
1 TTTAGAGGG-TTTAGGATTTAATTTTGGGG
* * *
14992918 TTTTGAGGGTTTAGGGTTTAATTTTGGAG
1 TTTAGAGGGTTTAGGATTTAATTTTGGGG
14992947 TTTAG
1 TTTAG
14992952 TTTTAGGGTT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
29 29 0.38
30 37 0.49
31 10 0.13
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.48
Consensus pattern (29 bp):
TTTAGAGGGTTTAGGATTTAATTTTGGGG
Found at i:14992899 original size:60 final size:59
Alignment explanation
Indices: 14992828--14992951 Score: 158
Period size: 60 Copynumber: 2.1 Consensus size: 59
14992818 AACTTCAGAA
* * *
14992828 TTTATAGGGTTTTAGGGTTTAATTTTAAGGTTTGGAGGGTTTAGGATTTCAACTTTGGGG
1 TTTAGAGGGTTTTAGGATTTAATTTTAAGGTTTGGAGGGTTTAGGATTT-AACTTTGGAG
* ** * * *
14992888 TTTAGAGGGTTTTAGGATTTAGTTTTTGGGTTTTGAGGGTTTAGGGTTTAATTTTGGAG
1 TTTAGAGGGTTTTAGGATTTAATTTTAAGGTTTGGAGGGTTTAGGATTTAACTTTGGAG
14992947 TTTAG
1 TTTAG
14992952 TTTTAGGGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
59 13 0.24
60 42 0.76
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.48
Consensus pattern (59 bp):
TTTAGAGGGTTTTAGGATTTAATTTTAAGGTTTGGAGGGTTTAGGATTTAACTTTGGAG
Found at i:14992954 original size:42 final size:42
Alignment explanation
Indices: 14992897--14992987 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
14992887 GTTTAGAGGG
* * *
14992897 TTTTAGGATTTAGTTTTTGGGTTTTGAGGGTTTAGGGTTTAA
1 TTTTAGGATTTAGTTTTAGGGTTTGGAGAGTTTAGGGTTTAA
* *
14992939 TTTT-GGAGTTTAGTTTTAGGGTTTGGCGAGTTTAGGTTTTAA
1 TTTTAGGA-TTTAGTTTTAGGGTTTGGAGAGTTTAGGGTTTAA
14992981 TTTTAGG
1 TTTTAGG
14992988 GTTTTGATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
41 3 0.07
42 37 0.88
43 2 0.05
ACGTcount: A:0.16, C:0.01, G:0.31, T:0.52
Consensus pattern (42 bp):
TTTTAGGATTTAGTTTTAGGGTTTGGAGAGTTTAGGGTTTAA
Found at i:14992962 original size:13 final size:13
Alignment explanation
Indices: 14992896--14992962 Score: 55
Period size: 13 Copynumber: 4.9 Consensus size: 13
14992886 GGTTTAGAGG
*
14992896 GTTTTAGGATTTA
1 GTTTTAGGGTTTA
*
14992909 GTTTTTGGGTTTTGA
1 GTTTTAGGG-TTT-A
*
14992924 GGGTTTAGGGTTTA
1 -GTTTTAGGGTTTA
*
14992938 ATTTT-GGAGTTTA
1 GTTTTAGG-GTTTA
14992951 GTTTTAGGGTTT
1 GTTTTAGGGTTT
14992963 GGCGAGTTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
12 2 0.05
13 23 0.55
14 6 0.14
15 4 0.10
16 7 0.17
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (13 bp):
GTTTTAGGGTTTA
Found at i:14993441 original size:10 final size:10
Alignment explanation
Indices: 14993426--14993450 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14993416 AATATATGTT
14993426 AAAAAAATAA
1 AAAAAAATAA
14993436 AAAAAAATAA
1 AAAAAAATAA
14993446 AAAAA
1 AAAAA
14993451 TACCTGAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:14993716 original size:111 final size:110
Alignment explanation
Indices: 14993547--14993968 Score: 417
Period size: 109 Copynumber: 3.8 Consensus size: 110
14993537 GATTTTATAG
* * * * * *
14993547 AATCGATTGGGACAACATCGCAGGTC-AAAATTAAAGAATCGATCAGGATAACACCGCGAATCGA
1 AATCGACTGGGACAACACCGCAAGTCGAGAATTAAA-AATCGATCAGGATAAAACTGCGAATCGA
* * * *
14993611 AATCATGCCCAGAGGTCTTATAGAAATCATGTCCGGTGATCTTACGA
65 AATCATGCCCAGAGGTCTTACAGAAATCATGCCCGGAG-TCTTACAA
** *
14993658 AATTTACTGGGACAACACCACAAGTCGAGAA-TAATAAATCGATCAGGATAAAA-TCGCGAATCG
1 AATCGACTGGGACAACACCGCAAGTCGAGAATTAA-AAATCGATCAGGATAAAACT-GCGAATCG
* *
14993721 AAATTATGCCCAGAGATCTT--AGAAATCATGCCCGGAGGTCTTACAA
64 AAATCATGCCCAGAGGTCTTACAGAAATCATGCCCGGA-GTCTTACAA
* * * *
14993767 AATCGATTGGGACAACATCGCAAGTCGA-AATTAAAGAATCGATCGGGATAAAACTACGAATCGA
1 AATCGACTGGGACAACACCGCAAGTCGAGAATTAAA-AATCGATCAGGATAAAACTGCGAATCGA
* * * * *
14993831 AATTATG-CCTGAAAGTTTTACAAAAATCATGCCCGGAGTCTTACAA
65 AATCATGCCCAG-AGGTCTTACAGAAATCATGCCCGGAGTCTTACAA
* * ** *
14993877 AATCGACTGGGATAACACCGTAAGTCGAGAAATTAAAAAAATCGATTGGGATAACACTGCGAATC
1 AATCGACTGGGACAACACCGCAAGTCGAG-AATT--AAAAATCGATCAGGATAAAACTGCGAATC
* * *
14993942 GAAACCATGTCCGGAGGTCTTACAGAA
63 GAAATCATGCCCAGAGGTCTTACAGAA
14993969 TCGACTGAGA
Statistics
Matches: 257, Mismatches: 39, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
108 6 0.02
109 82 0.32
110 35 0.14
111 80 0.31
112 8 0.03
113 40 0.16
114 6 0.02
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (110 bp):
AATCGACTGGGACAACACCGCAAGTCGAGAATTAAAAATCGATCAGGATAAAACTGCGAATCGAA
ATCATGCCCAGAGGTCTTACAGAAATCATGCCCGGAGTCTTACAA
Found at i:14993751 original size:22 final size:22
Alignment explanation
Indices: 14993720--14993763 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14993710 ATCGCGAATC
*
14993720 GAAATTATGCCCAGAGATCTTA
1 GAAATCATGCCCAGAGATCTTA
* *
14993742 GAAATCATGCCCGGAGGTCTTA
1 GAAATCATGCCCAGAGATCTTA
14993764 CAAAATCGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (22 bp):
GAAATCATGCCCAGAGATCTTA
Found at i:14994731 original size:32 final size:33
Alignment explanation
Indices: 14994669--14994783 Score: 171
Period size: 33 Copynumber: 3.5 Consensus size: 33
14994659 TAGAGGCTAG
14994669 GATAAACTGGGCTTAAAACTTCATTGATGGTCA
1 GATAAACTGGGCTTAAAACTTCATTGATGGTCA
* *
14994702 GATAAATTGGGCTT-AAA-TGTCATTAATGGTCA
1 GATAAACTGGGCTTAAAACT-TCATTGATGGTCA
* *
14994734 GATAAACTGGGCTTAAAACTTCATTGATAGCCA
1 GATAAACTGGGCTTAAAACTTCATTGATGGTCA
14994767 GATAAACTGGGCTTAAA
1 GATAAACTGGGCTTAAA
14994784 TTTTTTATTT
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
31 1 0.01
32 28 0.38
33 43 0.59
34 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.30
Consensus pattern (33 bp):
GATAAACTGGGCTTAAAACTTCATTGATGGTCA
Found at i:15009455 original size:48 final size:48
Alignment explanation
Indices: 15009286--15009850 Score: 592
Period size: 48 Copynumber: 11.7 Consensus size: 48
15009276 AGATGAGAAA
* * * *
15009286 TTTAAAGTTGTTAAGCCTCT-ATTGAGAGGAGCTTTTCCAAGATGATGAAT
1 TTTAAAGTTGTTGAGCCTCTGCTT-AGAGGAGCTTTTTCAAGATGA--ATT
* * *
15009336 TTTAAAGTTGCTGAGCCTTTGCTTAGAAGAGC-TTTTCAAGATGATAAATTT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATG---AA-TT
* *
15009387 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTTTAAGATGAATT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAATT
**
15009435 TTTAAAGTTGTAAAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAGATT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGA-ATT
* * *
15009484 TTTAAAGTTGTTAAGCCTCTGCTTAAAGAAGCCTTTTCTCAAGATGAATT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTT-TCAAGATGAATT
** * *
15009534 TTTAAAGTTGTAAAGCCTTTGCTTAGAGGAGCTTTTTCAAGATGGATT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAATT
* * *
15009582 TTTAAAGTTATTGAGCTTCTGCTTAGAGGAG-TTTTTCCAAGATGATGAAT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTT-CAAGATGA--ATT
* * *
15009632 TTTAAAGTTGTTGAGCATCTGCTTAGAAGAGCTTTTTCAAGATGGATT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAATT
* * *
15009680 TTTAAAGTTATTGAGCATCTGTTTAGAGGAGCTTTTTCAAGATGAA-T
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAATT
* * * *
15009727 TTTAAAGTTGTTGAGCCTTTACTTAGATGAGCTTTTTTAAGATGAATT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAATT
* * * *
15009775 GTTAAAGTTGTGGAGCCTCTGCTTATAGGAGCCCTTTT----AT--ATT
1 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTTTCAAGATGAATT
* *
15009818 TTCAAAAGTTATTGAGCCTCTGCTTAGAGGAGC
1 TT-TAAAGTTGTTGAGCCTCTGCTTAGAGGAGC
15009851 CCTTTTAAAT
Statistics
Matches: 440, Mismatches: 59, Indels: 39
0.82 0.11 0.07
Matches are distributed among these distances:
43 5 0.01
44 25 0.06
45 2 0.00
47 45 0.10
48 157 0.36
49 53 0.12
50 97 0.22
51 45 0.10
52 11 0.03
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (48 bp):
TTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGATGAATT
Found at i:15009655 original size:98 final size:99
Alignment explanation
Indices: 15009286--15009806 Score: 591
Period size: 98 Copynumber: 5.3 Consensus size: 99
15009276 AGATGAGAAA
* * * *
15009286 TTTAAAGTTGTTAAGCCTCT-ATTGAGAGGAGC-TTTTCCAAGATGATGAATTTTAAAGTTGCTG
1 TTTAAAGTTATTGAGCCTCTGCTT-AGAGGAGCTTTTTCCAAGATGATGAATTTTAAAGTTGTTG
*
15009349 AGCCTTTGCTTAGAAGAGC-TTTTCAAGATGATAAATTT
65 AGCCTTTGCTTAGAAGAGCTTTTTCAAGATG---GA-TT
* * **
15009387 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTT-TAAGATGA--ATTTTTAAAGTTGTAAA
1 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTTCCAAGATGATGAATTTTAAAGTTGTTGA
* *
15009449 GCCTCTGCTTAGAGGAGCTTTTTCAAGATGAGATT
66 GCCTTTGCTTAGAAGAGCTTTTTCAAGATG-GATT
* * * * * * **
15009484 TTTAAAGTTGTTAAGCCTCTGCTTAAAGAAGCCTTTTCTCAAGATGA--ATTTTTAAAGTTGTAA
1 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTTC-CAAGATGATGAATTTTAAAGTTGTTG
*
15009547 AGCCTTTGCTTAGAGGAGCTTTTTCAAGATGGATT
65 AGCCTTTGCTTAGAAGAGCTTTTTCAAGATGGATT
*
15009582 TTTAAAGTTATTGAGCTTCTGCTTAGAGGAG-TTTTTCCAAGATGATGAATTTTAAAGTTGTTGA
1 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTTCCAAGATGATGAATTTTAAAGTTGTTGA
* *
15009646 GCATCTGCTTAGAAGAGCTTTTTCAAGATGGATT
66 GCCTTTGCTTAGAAGAGCTTTTTCAAGATGGATT
* *
15009680 TTTAAAGTTATTGAGCATCTGTTTAGAGGAGCTTTTT-C-A-A-GATGAATTTTAAAGTTGTTGA
1 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTTCCAAGATGATGAATTTTAAAGTTGTTGA
* * * *
15009741 GCCTTTACTTAGATGAGCTTTTTTAAGATGAATT
66 GCCTTTGCTTAGAAGAGCTTTTTCAAGATGGATT
* * * *
15009775 GTTAAAGTTGTGGAGCCTCTGCTTATAGGAGC
1 TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGC
15009807 CCTTTTATAT
Statistics
Matches: 368, Mismatches: 44, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
95 75 0.20
96 9 0.02
97 40 0.11
98 107 0.29
99 87 0.24
100 11 0.03
101 33 0.09
102 6 0.02
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.39
Consensus pattern (99 bp):
TTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTTTCCAAGATGATGAATTTTAAAGTTGTTGA
GCCTTTGCTTAGAAGAGCTTTTTCAAGATGGATT
Found at i:15009841 original size:44 final size:44
Alignment explanation
Indices: 15009778--15009882 Score: 165
Period size: 44 Copynumber: 2.4 Consensus size: 44
15009768 ATGAATTGTT
* * *
15009778 AAAGTTGTGGAGCCTCTGCTTATAGGAGCCCTTTTATATTTTCA
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCCTTTTAAATTTTCA
*
15009822 AAAGTTATTGAGCCTCTGCTTAGAGGAGCCCTTTTAAATTTTCA
1 AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCCTTTTAAATTTTCA
*
15009866 AAAGTCGTTGAGCCTCT
1 AAAGTTGTTGAGCCTCT
15009883 ATTAAGATGA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (44 bp):
AAAGTTGTTGAGCCTCTGCTTAGAGGAGCCCTTTTAAATTTTCA
Found at i:15013313 original size:24 final size:22
Alignment explanation
Indices: 15013245--15013321 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 22
15013235 GTCAAAAAAT
15013245 AAAAA-ATAATTTTAAATA-TA
1 AAAAATATAATTTTAAATATTA
* *
15013265 AGAAAATAAACATTTTAAATGTTA
1 A-AAAATATA-ATTTTAAATATTA
15013289 AAAATATATAATTTTAAAATATTA
1 AAAA-ATATAATTTT-AAATATTA
15013313 AAAAA-ATAA
1 AAAAATATAA
15013322 AAAAGGACAG
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
20 1 0.02
21 4 0.09
22 6 0.13
23 18 0.38
24 18 0.38
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (22 bp):
AAAAATATAATTTTAAATATTA
Found at i:15015922 original size:52 final size:51
Alignment explanation
Indices: 15015833--15015989 Score: 172
Period size: 52 Copynumber: 3.0 Consensus size: 51
15015823 TATAATCATA
* * *
15015833 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTTTTTTTCTGTAAGT
1 CAAACTTACCTATTAAGAATCCCTTTCCTCTTAGAATTTTTTTT-TGTAAGT
* * * * * *
15015885 CAAATTTGCTTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCTTTCCTCTTAGAATT-TTTTTTTGTAAGT
* *
15015937 CAAACTTACCTATTAAGAATCTTCTTT-ATCTTAGAATTTTTTTTTTGTAAGT
1 CAAACTTACCTATTAAGAATC-CCTTTCCTCTTAGAA-TTTTTTTTTGTAAGT
15015989 C
1 C
15015990 TTTTTGTCCA
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
52 76 0.87
53 11 0.13
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.45
Consensus pattern (51 bp):
CAAACTTACCTATTAAGAATCCCTTTCCTCTTAGAATTTTTTTTTGTAAGT
Found at i:15016031 original size:22 final size:22
Alignment explanation
Indices: 15016006--15016052 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
15015996 TCCATCAAGC
* *
15016006 AATATCTGACAAATCTCAAATA
1 AATATCTAACAAATCCCAAATA
15016028 AATATCTAACAAATCCCAAATA
1 AATATCTAACAAATCCCAAATA
15016050 AAT
1 AAT
15016053 CTCTTATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.19, G:0.02, T:0.26
Consensus pattern (22 bp):
AATATCTAACAAATCCCAAATA
Found at i:15016321 original size:25 final size:25
Alignment explanation
Indices: 15016292--15016357 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
15016282 TCAAACCAAT
*
15016292 CTCTTCCCATATCTTGAACTC-TCAA
1 CTCTTCCCATATCTCGAA-TCATCAA
* * *
15016317 CTCTTCTCATGTCTCGAATCATCAG
1 CTCTTCCCATATCTCGAATCATCAA
*
15016342 CTCTTCCCACATCTCG
1 CTCTTCCCATATCTCG
15016358 TACATTTGAC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
24 2 0.06
25 31 0.94
ACGTcount: A:0.20, C:0.38, G:0.08, T:0.35
Consensus pattern (25 bp):
CTCTTCCCATATCTCGAATCATCAA
Found at i:15017084 original size:52 final size:52
Alignment explanation
Indices: 15016955--15017084 Score: 197
Period size: 52 Copynumber: 2.5 Consensus size: 52
15016945 ATCTCTCTCC
* * * *
15016955 TCTTAGAATTCTTCTTTTGTAAGTCAAACTTACCTATTAAGAATCTTTTTTC
1 TCTTAGAATTCTTCTTTTGCAAGTCTAACTTACCTATTAAGAATCTTCTTTA
*
15017007 TTTTAGAATTCTTCTTTTGCAAGTCTAACTTACCTATTAAGAATCTTCTTTA
1 TCTTAGAATTCTTCTTTTGCAAGTCTAACTTACCTATTAAGAATCTTCTTTA
* *
15017059 TCTTAGAATTCTTTTTTTACAAGTCT
1 TCTTAGAATTCTTCTTTTGCAAGTCT
15017085 CTTTGTCCAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.26, C:0.17, G:0.08, T:0.49
Consensus pattern (52 bp):
TCTTAGAATTCTTCTTTTGCAAGTCTAACTTACCTATTAAGAATCTTCTTTA
Found at i:15017134 original size:22 final size:22
Alignment explanation
Indices: 15017109--15017150 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
15017099 CAATATCTGA
*
15017109 CAAATCTCAAATAAATCTCTAC
1 CAAATCACAAATAAATCTCTAC
15017131 CAAATCACAAATAAATCTCT
1 CAAATCACAAATAAATCTCT
15017151 TATTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
CAAATCACAAATAAATCTCTAC
Found at i:15018132 original size:52 final size:52
Alignment explanation
Indices: 15018064--15018175 Score: 165
Period size: 52 Copynumber: 2.2 Consensus size: 52
15018054 TTTCTCTTCA
* *
15018064 TGTAAGTCAAACTTACCTATTAAGAA-TCTCTTT-TCATTTAGAATTCTTCTTT
1 TGTAAGTCAAACTTACCTACTAAGAATTCTCTTTATC--TTAAAATTCTTCTTT
15018116 TGTAAGTCAAACTTACCTACTAAGAATTCTCTTTATCTTAAAATTCTTCTTT
1 TGTAAGTCAAACTTACCTACTAAGAATTCTCTTTATCTTAAAATTCTTCTTT
*
15018168 TATAAGTC
1 TGTAAGTC
15018176 TTCTTGTCCA
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
52 46 0.84
53 7 0.13
54 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (52 bp):
TGTAAGTCAAACTTACCTACTAAGAATTCTCTTTATCTTAAAATTCTTCTTT
Found at i:15018215 original size:11 final size:11
Alignment explanation
Indices: 15018199--15018240 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
15018189 AGCAATATCT
15018199 AACAAATCTTA
1 AACAAATCTTA
*
15018210 AACAAATCTTT
1 AACAAATCTTA
**
15018221 AACAAATCCCA
1 AACAAATCTTA
15018232 AACAAATCT
1 AACAAATCT
15018241 CTTATAGGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (11 bp):
AACAAATCTTA
Found at i:15018223 original size:22 final size:22
Alignment explanation
Indices: 15018198--15018240 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
15018188 AAGCAATATC
**
15018198 TAACAAATCTTAAACAAATCTT
1 TAACAAATCCCAAACAAATCTT
15018220 TAACAAATCCCAAACAAATCT
1 TAACAAATCCCAAACAAATCT
15018241 CTTATAGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (22 bp):
TAACAAATCCCAAACAAATCTT
Found at i:15018507 original size:25 final size:25
Alignment explanation
Indices: 15018478--15018546 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 25
15018468 TCAAACCAAT
15018478 CTCTTCTCATATCTCGAACT-ATCAA
1 CTCTT-TCATATCTCGAACTCATCAA
* *
15018503 CTCTTTTCATGTCTCGAA-TCATCAG
1 CTC-TTTCATATCTCGAACTCATCAA
15018528 CTCTTTCGATATCTCGAAC
1 CTCTTTC-ATATCTCGAAC
15018547 ATTTAACTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
24 5 0.14
25 30 0.81
26 2 0.05
ACGTcount: A:0.23, C:0.30, G:0.09, T:0.38
Consensus pattern (25 bp):
CTCTTTCATATCTCGAACTCATCAA
Found at i:15019203 original size:52 final size:52
Alignment explanation
Indices: 15019124--15019269 Score: 177
Period size: 52 Copynumber: 2.8 Consensus size: 52
15019114 AAACCTGCCC
* * *
15019124 ATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCTTGTAAGTCAAATTTACCT
1 ATTAAGAATCCCTTTCCTCTTAAAATTCTTCTCTTGCAAGTCAAACTTACCT
** * *
15019176 ATTAAGAATCTTTTTCCTTTTAAAATTCTTCTTTTGCAAGTCAAACTTACCT
1 ATTAAGAATCCCTTTCCTCTTAAAATTCTTCTCTTGCAAGTCAAACTTACCT
* * * *
15019228 ATTAAGAATCCTCTTT-ATCTTAGAATTCTTCTTTTACAAGTC
1 ATTAAGAATCC-CTTTCCTCTTAAAATTCTTCTCTTGCAAGTC
15019270 TTCTTGTCCA
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
52 77 0.96
53 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.45
Consensus pattern (52 bp):
ATTAAGAATCCCTTTCCTCTTAAAATTCTTCTCTTGCAAGTCAAACTTACCT
Found at i:15019310 original size:11 final size:11
Alignment explanation
Indices: 15019294--15019335 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
15019284 GCAATATCTG
15019294 ACAAATCTCAA
1 ACAAATCTCAA
**
15019305 ACAAATCTCTC
1 ACAAATCTCAA
15019316 ACAAATCTCAA
1 ACAAATCTCAA
*
15019327 ATAAATCTC
1 ACAAATCTC
15019336 TTATAAGATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.24
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:15019319 original size:22 final size:22
Alignment explanation
Indices: 15019294--15019336 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
15019284 GCAATATCTG
15019294 ACAAATCTCAAACAAATCTCTC
1 ACAAATCTCAAACAAATCTCTC
*
15019316 ACAAATCTCAAATAAATCTCT
1 ACAAATCTCAAACAAATCTCT
15019337 TATAAGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.26
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTC
Found at i:15020331 original size:52 final size:52
Alignment explanation
Indices: 15020206--15020362 Score: 197
Period size: 52 Copynumber: 3.0 Consensus size: 52
15020196 TATAACCATA
* * * ** **
15020206 CAAACTTACCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTATAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
* * *
15020258 TAAACTTACCTATTAAGAATCTCTTTCCTTTTAGAATTCTTTTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
* **
15020310 CAAACTTACCTATTAAGAATCTTTTTTATCTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
15020362 C
1 C
15020363 TTCTTGTCCA
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCTCTTTCCTCTTAGAATTCTTCTTTTGCAAGT
Found at i:15020397 original size:21 final size:22
Alignment explanation
Indices: 15020379--15020425 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
15020369 TCCATCAAGC
*
15020379 AATATCTGACAAATCTCAAACA
1 AATATCTAACAAATCTCAAACA
* *
15020401 AATCTCTAACAAATCACAAACA
1 AATATCTAACAAATCTCAAACA
15020423 AAT
1 AAT
15020426 CTCTTATAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.23, G:0.02, T:0.21
Consensus pattern (22 bp):
AATATCTAACAAATCTCAAACA
Found at i:15020403 original size:11 final size:11
Alignment explanation
Indices: 15020387--15020428 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
15020377 GCAATATCTG
15020387 ACAAATCTCAA
1 ACAAATCTCAA
*
15020398 ACAAATCTCTA
1 ACAAATCTCAA
*
15020409 ACAAATCACAA
1 ACAAATCTCAA
15020420 ACAAATCTC
1 ACAAATCTC
15020429 TTATAAGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:15020412 original size:22 final size:22
Alignment explanation
Indices: 15020387--15020429 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
15020377 GCAATATCTG
*
15020387 ACAAATCTCAAACAAATCTCTA
1 ACAAATCACAAACAAATCTCTA
15020409 ACAAATCACAAACAAATCTCT
1 ACAAATCACAAACAAATCTCT
15020430 TATAAGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (22 bp):
ACAAATCACAAACAAATCTCTA
Found at i:15021370 original size:52 final size:52
Alignment explanation
Indices: 15021299--15021443 Score: 159
Period size: 52 Copynumber: 2.8 Consensus size: 52
15021289 TATAACCATA
* *
15021299 CAAACTTGCCTGTTAAGAATCTTTCTCCTCTTAGAATTCTTATCCTATAAGT
1 CAAACTTGCCTATTAAGAATCTTTCTCCTCTTAGAATTCTTATCCTACAAGT
* * * ** *
15021351 CAAACTTGCCTATTAAGAATTCTTT-TCCTTTTAGAATTTTTTTTTTGCAAGT
1 CAAACTTGCCTATTAAGAA-TCTTTCTCCTCTTAGAATTCTTATCCTACAAGT
* **
15021403 CAAACTTACCTATTAAGAATC-TTCTTTATCTTAGAATTCTT
1 CAAACTTGCCTATTAAGAATCTTTC-TCCTCTTAGAATTCTT
15021444 CTTTTGTAAG
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
50 2 0.03
51 2 0.03
52 68 0.88
53 5 0.06
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.45
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCTTTCTCCTCTTAGAATTCTTATCCTACAAGT
Found at i:15021800 original size:25 final size:24
Alignment explanation
Indices: 15021725--15021817 Score: 73
Period size: 25 Copynumber: 3.8 Consensus size: 24
15021715 TAAGCTTACT
*
15021725 TCTTCCCATGTCTCAAACA-AAGC
1 TCTTCCCATGTCTCGAACATAAGC
* * *
15021748 TCTTCCTATATCTCGAACTGTTAA-C
1 TCTTCCCATGTCTCGAAC--ATAAGC
*
15021773 TCTTCCCATGTCTCGAATCATCAGC
1 TCTTCCCATGTCTCGAA-CATAAGC
** *
15021798 TCTTTTCATATCTCGAACAT
1 TCTTCCCATGTCTCGAACAT
15021818 TTGACTCTTC
Statistics
Matches: 54, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
23 15 0.28
24 5 0.09
25 31 0.57
26 3 0.06
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (24 bp):
TCTTCCCATGTCTCGAACATAAGC
Found at i:15022528 original size:52 final size:52
Alignment explanation
Indices: 15022381--15022531 Score: 164
Period size: 52 Copynumber: 2.9 Consensus size: 52
15022371 TATAACCATA
* * ** *
15022381 CAAACTTGCCCATTAAGAATCC-CTTTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCCTCTTTCCTCTTAGAATT-TTCTTTTGCAAGT
* * *
15022433 CAAACTTTCCTATTAAGAAT-CTCTTTCCTTTTAAAAATTTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCCTCTTTCCTCTT-AGAATTTTCTTTTGCAAGT
* *
15022485 CAAACTTACTTATTAAGAATCCTCTTT-ATCTTAGAATTATTCTTTTG
1 CAAACTTACCTATTAAGAATCCTCTTTCCTCTTAGAATT-TTCTTTTG
15022532 TAAGCTTTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
51 6 0.07
52 66 0.80
53 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCTCTTTCCTCTTAGAATTTTCTTTTGCAAGT
Found at i:15022579 original size:11 final size:11
Alignment explanation
Indices: 15022563--15022602 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
15022553 AATATCTGAC
15022563 AAATCTCAAAT
1 AAATCTCAAAT
**
15022574 AAATCTTTAAT
1 AAATCTCAAAT
*
15022585 AAATCTCAAAC
1 AAATCTCAAAT
15022596 AAATCTC
1 AAATCTC
15022603 TTATAAGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATCTCAAAT
Found at i:15024089 original size:21 final size:21
Alignment explanation
Indices: 15024063--15024112 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
15024053 TACCTTCTTT
15024063 CATCTTCAGAAAAAACAGATC
1 CATCTTCAGAAAAAACAGATC
* *
15024084 CATCTTCAGAGAATACAGATC
1 CATCTTCAGAAAAAACAGATC
15024105 CATCTTCA
1 CATCTTCA
15024113 AATATAATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.26, G:0.10, T:0.24
Consensus pattern (21 bp):
CATCTTCAGAAAAAACAGATC
Found at i:15028130 original size:25 final size:26
Alignment explanation
Indices: 15028097--15028145 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
15028087 AAATAATTGA
*
15028097 ATATATTTTTATTCA-TTATTTAAAT
1 ATATATTTTTATCCATTTATTTAAAT
*
15028122 ATATGTTTTTATCCATTTATTTAA
1 ATATATTTTTATCCATTTATTTAA
15028146 CTAAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (26 bp):
ATATATTTTTATCCATTTATTTAAAT
Found at i:15028258 original size:19 final size:19
Alignment explanation
Indices: 15028234--15028270 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15028224 CTCTTATCAA
15028234 TTTAAACAAATTTAAATAT
1 TTTAAACAAATTTAAATAT
**
15028253 TTTAAATGAATTTAAATA
1 TTTAAACAAATTTAAATA
15028271 ATAAAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (19 bp):
TTTAAACAAATTTAAATAT
Found at i:15028495 original size:17 final size:17
Alignment explanation
Indices: 15028473--15028505 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15028463 AAATCTTATC
15028473 AAATA-TATATTATAATA
1 AAATATTATA-TATAATA
15028490 AAATATTATATATAAT
1 AAATATTATATATAAT
15028506 TATAAACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATATTATATATAATA
Found at i:15029127 original size:26 final size:25
Alignment explanation
Indices: 15029071--15029142 Score: 66
Period size: 26 Copynumber: 3.1 Consensus size: 25
15029061 AAATTTGTTA
15029071 TTGAAATA-TTAAAA--AAATAT-T
1 TTGAAATATTTAAAATCAAATATAT
* *
15029092 TT--AATATTTAAAATTAAATTTAT
1 TTGAAATATTTAAAATCAAATATAT
*
15029115 TTGAAATATTTTATAATCAAATATAT
1 TTGAAATA-TTTAAAATCAAATATAT
15029141 TT
1 TT
15029143 TTTAAGCCAG
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 4 0.10
20 6 0.15
21 2 0.05
22 5 0.12
23 3 0.08
25 4 0.10
26 16 0.40
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (25 bp):
TTGAAATATTTAAAATCAAATATAT
Found at i:15032344 original size:30 final size:30
Alignment explanation
Indices: 15032303--15032361 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
15032293 GAATTCTAGT
*
15032303 ATTTTTTTAATTATTTATTTATTTTTATTG
1 ATTTGTTTAATTATTTATTTATTTTTATTG
*
15032333 ATTTGTTTAATTGTTTATTTATTTTTATT
1 ATTTGTTTAATTATTTATTTATTTTTATT
15032362 TATAAATACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (30 bp):
ATTTGTTTAATTATTTATTTATTTTTATTG
Found at i:15032724 original size:37 final size:38
Alignment explanation
Indices: 15032656--15032727 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
15032646 GTTTTTTCAT
* ** *
15032656 AAAATCCTACCAACATATTGGAGGATAATTTTTGAAAA
1 AAAATCCTACAAACATATTAAAAGATAATTTTTGAAAA
*
15032694 AAAATCGTACAAACATATTAAAAGAT-ATTTTTGA
1 AAAATCCTACAAACATATTAAAAGATAATTTTTGA
15032728 CAATAAACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 8 0.28
38 21 0.72
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (38 bp):
AAAATCCTACAAACATATTAAAAGATAATTTTTGAAAA
Found at i:15034593 original size:22 final size:22
Alignment explanation
Indices: 15034568--15034622 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
15034558 ATTTCTTTTA
*
15034568 TTTAGGGTTTTGGCTTTGAGAG
1 TTTAGGATTTTGGCTTTGAGAG
15034590 TTTAGGATTTTGGCTTTGAGAG
1 TTTAGGATTTTGGCTTTGAGAG
15034612 TTTAGGATTTT
1 TTTAGGATTTT
15034623 AGATTTTAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.16, C:0.04, G:0.31, T:0.49
Consensus pattern (22 bp):
TTTAGGATTTTGGCTTTGAGAG
Found at i:15034629 original size:7 final size:7
Alignment explanation
Indices: 15034612--15034664 Score: 61
Period size: 7 Copynumber: 7.1 Consensus size: 7
15034602 GCTTTGAGAG
15034612 TTTAGGAT
1 TTTA-GAT
15034620 TTTAGAT
1 TTTAGAT
15034627 TTTAGGAT
1 TTTA-GAT
15034635 TTTAGAT
1 TTTAGAT
*
15034642 TTTGGAT
1 TTTAGAT
15034649 TTTAGGAT
1 TTTA-GAT
*
15034657 TTTGGAT
1 TTTAGAT
15034664 T
1 T
15034665 AAGGGTTTTG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
7 23 0.57
8 17 0.43
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.55
Consensus pattern (7 bp):
TTTAGAT
Found at i:15034632 original size:15 final size:14
Alignment explanation
Indices: 15034590--15034664 Score: 87
Period size: 15 Copynumber: 5.1 Consensus size: 14
15034580 GCTTTGAGAG
*
15034590 TTTAGGATTTTGGCT
1 TTTA-GATTTTGGAT
* *
15034605 TTGAGAGTTTAGGAT
1 TTTAGA-TTTTGGAT
15034620 TTTAGATTTTAGGAT
1 TTTAGATTTT-GGAT
15034635 TTTAGATTTTGGAT
1 TTTAGATTTTGGAT
15034649 TTTAGGATTTTGGAT
1 TTTA-GATTTTGGAT
15034664 T
1 T
15034665 AAGGGTTTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
14 13 0.25
15 39 0.75
ACGTcount: A:0.21, C:0.01, G:0.25, T:0.52
Consensus pattern (14 bp):
TTTAGATTTTGGAT
Found at i:15034642 original size:22 final size:22
Alignment explanation
Indices: 15034612--15034664 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
15034602 GCTTTGAGAG
15034612 TTTAGGATTTTAGATTTTAGGAT
1 TTTA-GATTTTAGATTTTAGGAT
*
15034635 TTTAGATTTTGGATTTTAGGAT
1 TTTAGATTTTAGATTTTAGGAT
*
15034657 TTTGGATT
1 TTTAGATT
15034665 AAGGGTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
22 24 0.86
23 4 0.14
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.55
Consensus pattern (22 bp):
TTTAGATTTTAGATTTTAGGAT
Found at i:15034673 original size:22 final size:22
Alignment explanation
Indices: 15034624--15034680 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
15034614 TAGGATTTTA
**
15034624 GATTTTAGGATTTTAGATTTTG
1 GATTTTAGGATTTTAGATTAAG
*
15034646 GATTTTAGGATTTTGGATTAAG
1 GATTTTAGGATTTTAGATTAAG
*
15034668 GGTTTT--GATTTTA
1 GATTTTAGGATTTTA
15034681 AGGTTCGGAG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 6 0.20
22 24 0.80
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (22 bp):
GATTTTAGGATTTTAGATTAAG
Found at i:15034761 original size:85 final size:85
Alignment explanation
Indices: 15034672--15034837 Score: 210
Period size: 85 Copynumber: 2.0 Consensus size: 85
15034662 ATTAAGGGTT
* * * **
15034672 TTGATTTTAAGG-TTCGGAGGTTTTAAGGTTTCAATTTAGGGTTTTAGTTTAGTGGTTTTGATTT
1 TTGATTTT-AGGTTTCGAAAGTTTTAAGGTTTCAATTTAGGGTTTTAGTTTAGGGGTTTCAATTT
*
15034736 TAGGGTTAA-GGTTTTAGTGTC
65 TAAGG-TAAGGGTTTTAGTGTC
* * * *
15034757 TTGATTTTAGGTTTCGAAAGTTTTAGGGTTTTAATTTAGGGTTTTGGTTTTGGGGTTTCAATTTT
1 TTGATTTTAGGTTTCGAAAGTTTTAAGGTTTCAATTTAGGGTTTTAGTTTAGGGGTTTCAATTTT
15034822 AAGGTAAGGGTTTTAG
66 AAGGTAAGGGTTTTAG
15034838 GGTTTTAACT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 6 0.09
85 63 0.91
ACGTcount: A:0.19, C:0.03, G:0.28, T:0.49
Consensus pattern (85 bp):
TTGATTTTAGGTTTCGAAAGTTTTAAGGTTTCAATTTAGGGTTTTAGTTTAGGGGTTTCAATTTT
AAGGTAAGGGTTTTAGTGTC
Found at i:15034907 original size:59 final size:58
Alignment explanation
Indices: 15034802--15034957 Score: 145
Period size: 59 Copynumber: 2.6 Consensus size: 58
15034792 TTAGGGTTTT
* * * * *
15034802 GGTTTTGGGGTTTCAATTTTAAGG-T-AAGGGTTTTAGGGTTTTAACTTCAGGATTTATAG
1 GGTTTTGGGGTTT-AGTTTTAAGGTTGGAGGG-TTTA-GGATTCAACTTCAGGATTTAGAG
** *
15034861 GGTTTTGGGGTTTAGTTTTAAGGTTCGGAGGGTTTAGGATTCAACTTTGGGGTTTAGAG
1 GGTTTTGGGGTTTAGTTTTAAGGTT-GGAGGGTTTAGGATTCAACTTCAGGATTTAGAG
* * **
15034920 GGTTTTAGGATTTAGTTTTTGGGTTTGGAGGGTTTAGG
1 GGTTTTGGGGTTTAGTTTTAAGG-TTGGAGGGTTTAGG
15034958 GTTTAATTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
58 9 0.11
59 62 0.77
60 6 0.07
61 4 0.05
ACGTcount: A:0.18, C:0.04, G:0.35, T:0.44
Consensus pattern (58 bp):
GGTTTTGGGGTTTAGTTTTAAGGTTGGAGGGTTTAGGATTCAACTTCAGGATTTAGAG
Found at i:15034929 original size:30 final size:29
Alignment explanation
Indices: 15034888--15034976 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
15034878 TTAAGGTTCG
* *
15034888 GAGGGTTTAGGATTCAACTTTGGGGTTTA
1 GAGGGTTTAGGATTTAATTTTGGGGTTTA
* * *
15034917 GAGGGTTTTAGGATTTAGTTTTTGGGTTTG
1 GAGGG-TTTAGGATTTAATTTTGGGGTTTA
* *
15034947 GAGGGTTTAGGGTTTAATTTTGGAGTTTA
1 GAGGGTTTAGGATTTAATTTTGGGGTTTA
15034976 G
1 G
15034977 TTTTAGGGTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
29 25 0.51
30 24 0.49
ACGTcount: A:0.18, C:0.02, G:0.36, T:0.44
Consensus pattern (29 bp):
GAGGGTTTAGGATTTAATTTTGGGGTTTA
Found at i:15034969 original size:59 final size:59
Alignment explanation
Indices: 15034854--15034976 Score: 156
Period size: 59 Copynumber: 2.1 Consensus size: 59
15034844 AACTTCAGGA
* * * *
15034854 TTTATAGGGTTTTGGGGTTTAGTTTTAAGGTTCGGAGGGTTTAGGATTCAACTTTGGGG
1 TTTAGAGGGTTTTAGGATTTAGTTTTAAGGTTCGGAGGGTTTAGGATTCAACTTTGGAG
** * * * *
15034913 TTTAGAGGGTTTTAGGATTTAGTTTTTGGGTTTGGAGGGTTTAGGGTTTAATTTTGGAG
1 TTTAGAGGGTTTTAGGATTTAGTTTTAAGGTTCGGAGGGTTTAGGATTCAACTTTGGAG
15034972 TTTAG
1 TTTAG
15034977 TTTTAGGGTT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.17, C:0.02, G:0.35, T:0.46
Consensus pattern (59 bp):
TTTAGAGGGTTTTAGGATTTAGTTTTAAGGTTCGGAGGGTTTAGGATTCAACTTTGGAG
Found at i:15034979 original size:42 final size:42
Alignment explanation
Indices: 15034922--15035012 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
15034912 GTTTAGAGGG
* *
15034922 TTTTAGGATTTAGTTTTTGGGTTTGGA-GGGTTTAGGGTTTAA
1 TTTTAGGATTTAGTTTTAGGGTTT-GACGAGTTTAGGGTTTAA
*
15034964 TTTT-GGAGTTTAGTTTTAGGGTTTGACGAGTTTAGGTTTTAA
1 TTTTAGGA-TTTAGTTTTAGGGTTTGACGAGTTTAGGGTTTAA
15035006 TTTTAGG
1 TTTTAGG
15035013 GTTTTGATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
41 5 0.12
42 36 0.84
43 2 0.05
ACGTcount: A:0.18, C:0.01, G:0.31, T:0.51
Consensus pattern (42 bp):
TTTTAGGATTTAGTTTTAGGGTTTGACGAGTTTAGGGTTTAA
Done.