Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 92 of 121
Found at i:15655498 original size:12 final size:12
Alignment explanation
Indices: 15655469--15655511 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
15655459 ATATTTTGCT
15655469 TAAAAAAAGAGAA
1 TAAAAAAA-AGAA
* *
15655482 CAAAAAAAAGAG
1 TAAAAAAAAGAA
*
15655494 TAAAAAAAAAAA
1 TAAAAAAAAGAA
15655506 TAAAAA
1 TAAAAA
15655512 GTGAAAAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 18 0.72
13 7 0.28
ACGTcount: A:0.81, C:0.02, G:0.09, T:0.07
Consensus pattern (12 bp):
TAAAAAAAAGAA
Found at i:15656530 original size:94 final size:96
Alignment explanation
Indices: 15656353--15656715 Score: 437
Period size: 96 Copynumber: 3.8 Consensus size: 96
15656343 CATATGAGAT
* * * * ** * *
15656353 TTTTAAAGTTGTTAAACCTTTCCTTAGATTAGCTTTTTTAAGATAAGATTTTTAAAGTTGTTGAG
1 TTTTAAAGTTGTTGAACCTCTACTTAAAGGAGCTTTTTCAAGATAAGATTTTTAAAGTCGTTGAG
* *
15656418 CCTCTACTTAAAAGAGCTTTTTCAAGATGAA
66 CCTCTACTTAGAGGAGCTTTTTCAAGATGAA
* * * * * *
15656449 TTTTAAAGTTATTGAACTTCTGCTTAGAGGAGCTTTTTCAAGATAA-A-TTTTAAAGTTGTTGAA
1 TTTTAAAGTTGTTGAACCTCTACTTAAAGGAGCTTTTTCAAGATAAGATTTTTAAAGTCGTTGAG
*
15656512 CCTCTACTTAGAGGAGCTTTTCCAAGATGAA
66 CCTCTACTTAGAGGAGCTTTTTCAAGATGAA
* *
15656543 TTTTAAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTCCAAGATAAGATTTTTAAAGTCGTTGAG
1 TTTTAAAGTTGTTGAACCTCTACTTAAAGGAGCTTTTTCAAGATAAGATTTTTAAAGTCGTTGAG
* *
15656608 CCTCTACTTAGGGGAACTTTTTCAAGAT-AGA
66 CCTCTACTTAGAGGAGCTTTTTCAAGATGA-A
* * * * *
15656639 TTGTTAAAGTTGTTGAGCCTCTACTTATAGGAGATTTTTCAAGAT-GGATTTTTAAAGTCATTGA
1 TT-TTAAAGTTGTTGAACCTCTACTTAAAGGAGCTTTTTCAAGATAAGATTTTTAAAGTCGTTGA
*
15656703 GCCTCTGCTTAGA
65 GCCTCTACTTAGA
15656716 AGATCCTTTT
Statistics
Matches: 231, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
94 83 0.36
95 3 0.01
96 108 0.47
97 37 0.16
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (96 bp):
TTTTAAAGTTGTTGAACCTCTACTTAAAGGAGCTTTTTCAAGATAAGATTTTTAAAGTCGTTGAG
CCTCTACTTAGAGGAGCTTTTTCAAGATGAA
Found at i:15656659 original size:48 final size:47
Alignment explanation
Indices: 15656353--15656852 Score: 418
Period size: 47 Copynumber: 10.7 Consensus size: 47
15656343 CATATGAGAT
* * * * ** *
15656353 TTTTAAAGTTGTTAAACCTTTCCTTAGATTAGCTTTTTTAAGATAAGA
1 TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGAT-AGA
* *
15656401 TTTTTAAAGTTGTTGAGCCTCTACTTAAAAGAGCTTTTTCAAGAT-GAA
1 -TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATAG-A
* * * * *
15656449 TTTTAAAGTTATTGAACTTCTGCTTAGAGGAGCTTTTTCAAGATAAA
1 TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATAGA
* *
15656496 TTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTCCAAGAT-GAA
1 TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATAG-A
* * * *
15656543 TTTTAAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTCCAAGATAAGA
1 TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGAT-AGA
* * *
15656591 TTTTTAAAGTCGTTGAGCCTCTACTTAGGGGAACTTTTTCAAGATAGA
1 -TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATAGA
* * *
15656639 TTGTTAAAGTTGTTGAGCCTCTACTTATAGGAGATTTTTCAAGATGGA
1 TT-TTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATAGA
** * * * *
15656687 TTTTTAAAGTCATTGAGCCTCTGCTTAGAAGATCCTTTTT-AAGCT---
1 -TTTTAAAGTTGTTGAGCCTCTACTTAGAGGA-GCTTTTTCAAGATAGA
* * *
15656732 TTTCAAAAGTTGTTGAGCCTTTACTTAGATGAGACTTTTT-AA-AT---
1 TTT-TAAAGTTGTTGAGCCTCTACTTAGAGGAG-CTTTTTCAAGATAGA
** * * *
15656776 TTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTC-A-A-A-A
1 TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATAGA
*
15656819 TTTTAAAAGTTGTTAAGCCTCTACTTAGAGGAGC
1 TTTT-AAAGTTGTTGAGCCTCTACTTAGAGGAGC
15656853 CTCTTTAAAT
Statistics
Matches: 376, Mismatches: 60, Indels: 35
0.80 0.13 0.07
Matches are distributed among these distances:
42 7 0.02
43 29 0.08
44 32 0.09
45 30 0.08
47 125 0.33
48 72 0.19
49 81 0.22
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (47 bp):
TTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATAGA
Found at i:15656745 original size:190 final size:188
Alignment explanation
Indices: 15656349--15656725 Score: 434
Period size: 190 Copynumber: 2.0 Consensus size: 188
15656339 AGAACATATG
* * * * ** ** *
15656349 AGAT-TTTTAAAGTTGTTAAACCTTTCCTTAGATTAGCTTTTTTAAGATAAGATTTTTAAAGTTG
1 AGATATTTAAAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTCCAAGATAAGATTTTTAAAGTCG
* * *
15656413 TTGAGCCTCTACTTAAAAGAGCTTTTTCAAGATGAATTTTAAAGTTATTGAACTTCTGCTTAGAG
66 TTGAGCCTCTACTTAAAAGAACTTTTTCAAGATGAATTTTAAAGTTATTGAACCTCTACTTAGAG
* ** * *
15656478 GAGCTTTTTCAAGATAAATTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTCCA
131 GAGATTTTTCAAGATAAATTTTAAAGTCATTGAACCTCTACTTAGAAGACCTTTTCCA
*
15656536 AGATGAATTTTAAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTCCAAGATAAGATTTTTAAAGT
1 AGAT--ATTTAAAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTCCAAGATAAGATTTTTAAAGT
*** * *
15656601 CGTTGAGCCTCTACTTAGGGGAACTTTTTCAAGAT-AGATTGTTAAAGTTGTTGAGCCTCTACTT
64 CGTTGAGCCTCTACTTAAAAGAACTTTTTCAAGATGA-ATT-TTAAAGTTATTGAACCTCTACTT
* * * * *
15656665 ATAGGAGATTTTTCAAGATGGATTTTTAAAGTCATTGAGCCTCTGCTTAGAAGATCCTTTT
127 AGAGGAGATTTTTCAAGAT-AAATTTTAAAGTCATTGAACCTCTACTTAGAAGA-CCTTTT
15656726 TAAGCTTTTC
Statistics
Matches: 157, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
187 4 0.03
189 1 0.01
190 84 0.54
191 36 0.23
192 27 0.17
193 5 0.03
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.40
Consensus pattern (188 bp):
AGATATTTAAAAGTTGTTAAACCTCTACTTAAAGGAGCTTTTCCAAGATAAGATTTTTAAAGTCG
TTGAGCCTCTACTTAAAAGAACTTTTTCAAGATGAATTTTAAAGTTATTGAACCTCTACTTAGAG
GAGATTTTTCAAGATAAATTTTAAAGTCATTGAACCTCTACTTAGAAGACCTTTTCCA
Found at i:15656793 original size:43 final size:43
Alignment explanation
Indices: 15656692--15656907 Score: 229
Period size: 44 Copynumber: 5.0 Consensus size: 43
15656682 ATGGATTTTT
* * * * *
15656692 AAAGTCATTGAGCCTCTGCTTAGAAGATCCTTTTTAAGCTTTTCA
1 AAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTTAA--ATTTCA
* * *
15656737 AAAGTTGTTGAGCCTTTACTTAGATGAGACTTTTTAAATTTCA
1 AAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTTAAATTTCA
* *
15656780 AAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTCAAAATTTTA
1 AAAGTTATTGAGCCTCTACTTAGATGAGCCTTTT-TAAATTTCA
* * * *
15656824 AAAGTTGTTAAGCCTCTACTTAGAGGAGCCTCTTTAAATTTTCA
1 AAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTTAAA-TTTCA
* *
15656868 AAAGTCATTGAGACTCTA-TTCAGATGAG-CTTTTTAAATTT
1 AAAGTTATTGAGCCTCTACTT-AGATGAGCCTTTTTAAATTT
15656908 TTAAAAATGT
Statistics
Matches: 143, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
42 3 0.02
43 49 0.34
44 61 0.43
45 30 0.21
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (43 bp):
AAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTTAAATTTCA
Found at i:15656802 original size:88 final size:88
Alignment explanation
Indices: 15656692--15656930 Score: 261
Period size: 88 Copynumber: 2.7 Consensus size: 88
15656682 ATGGATTTTT
* * * ** * *
15656692 AAAGTCATTGAGCCTCTGCTTAGAAGATCCTTTTTAAGCTTTTCAAAAGTTGTTGAGCCTTTACT
1 AAAGTCATTGAGCCTCTACTTAGAAGAGCCTTTTCAAAATTTT-AAAAGTTGTTAAGCCTCTACT
* *
15656757 TAGATGAGACTTTTTAAA-TTTCA
65 TAGAGGAGACTCTTTAAATTTTCA
* *
15656780 AAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTCAAAATTTTAAAAGTTGTTAAGCCTCTACTT
1 AAAGTCATTGAGCCTCTACTTAGAAGAGCCTTTTCAAAATTTTAAAAGTTGTTAAGCCTCTACTT
*
15656845 AGAGGAGCCTCTTTAAATTTTCA
66 AGAGGAGACTCTTTAAATTTTCA
* * * *
15656868 AAAGTCATTGAGACTCTA-TTCAGATGAG-CTTTTTAAATTTTTAAAAATGTTGTTGAA-CCTCT
1 AAAGTCATTGAGCCTCTACTT-AGAAGAGCCTTTTCAAAATTTT-AAAA-GTTGTT-AAGCCTCT
15656930 A
62 A
15656931 TAAACACTCA
Statistics
Matches: 130, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
87 48 0.37
88 68 0.52
89 12 0.09
90 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (88 bp):
AAAGTCATTGAGCCTCTACTTAGAAGAGCCTTTTCAAAATTTTAAAAGTTGTTAAGCCTCTACTT
AGAGGAGACTCTTTAAATTTTCA
Found at i:15658272 original size:59 final size:58
Alignment explanation
Indices: 15658183--15658407 Score: 260
Period size: 57 Copynumber: 3.9 Consensus size: 58
15658173 TTAAAGTATA
* * * * * * * *
15658183 AAAATTTCAAAAAAGTATTTTTGAGAAAAAGTTGAAAATATTAATTTT-TTTTAAAAT
1 AAAATTTTAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
*
15658240 AAAAATTTTAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 -AAAATTTTAAAAAA-ATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
* ** * *
15658300 AAAATTTTCAAAAAGCA-TTTTAAGGGAAAA-TTGAAAGTATCAATTTTCGTTGAACAT
1 AAAATTTTAAAAAAATATTTTTAA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
*
15658357 AAAA-TTAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAATTTTAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
15658408 TAATAAAAGC
Statistics
Matches: 144, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
56 14 0.10
57 60 0.42
58 20 0.14
59 43 0.30
60 7 0.05
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.36
Consensus pattern (58 bp):
AAAATTTTAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
Found at i:15659117 original size:22 final size:21
Alignment explanation
Indices: 15659089--15659129 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
15659079 TTTTATTATT
*
15659089 TTTTTTCTTTTTTTATTTTTAA
1 TTTTTTCTTTCTTT-TTTTTAA
15659111 TTTTTTCTTTCTTTTTTTT
1 TTTTTTCTTTCTTTTTTTT
15659130 CTTCTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTCTTTCTTTTTTTTAA
Found at i:15667647 original size:27 final size:28
Alignment explanation
Indices: 15667584--15667647 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
15667574 TTGGGTCGAA
15667584 GCTCAATTTCAATTCAACTAGGCTTCAG
1 GCTCAATTTCAATTCAACTAGGCTTCAG
* *
15667612 G-TCCAATTTCAATTCAA-TCGGCTTGAG
1 GCT-CAATTTCAATTCAACTAGGCTTCAG
*
15667639 GCTCGATTT
1 GCTCAATTT
15667648 TGATTGGATC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 15 0.48
28 16 0.52
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (28 bp):
GCTCAATTTCAATTCAACTAGGCTTCAG
Found at i:15670119 original size:19 final size:18
Alignment explanation
Indices: 15670087--15670125 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
15670077 AAGCAAGAAA
*
15670087 AGAAAAAGCAAAAGTGAG
1 AGAAAAAGCAAAAGTCAG
*
15670105 AGAAAAAGGAGAAAGTCAG
1 AGAAAAAGCA-AAAGTCAG
15670124 AG
1 AG
15670126 TAATCCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.59, C:0.05, G:0.31, T:0.05
Consensus pattern (18 bp):
AGAAAAAGCAAAAGTCAG
Found at i:15675170 original size:17 final size:16
Alignment explanation
Indices: 15675127--15675163 Score: 58
Period size: 15 Copynumber: 2.3 Consensus size: 16
15675117 AAAGAGACAA
15675127 AAAAAGCAAAAAAAAT-
1 AAAAA-CAAAAAAAATG
15675143 AAAAACAAAAAAAATG
1 AAAAACAAAAAAAATG
15675159 AAAAA
1 AAAAA
15675164 TGAAAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.84, C:0.05, G:0.05, T:0.05
Consensus pattern (16 bp):
AAAAACAAAAAAAATG
Found at i:15676169 original size:48 final size:48
Alignment explanation
Indices: 15675998--15676507 Score: 473
Period size: 48 Copynumber: 10.9 Consensus size: 48
15675988 AGAACATATG
* * *
15675998 AGATTTTTAAAGTTGTTAAACCTCTCCTTAGAGGAGC-TTTTCTAAGAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTC-AAGAT
* *
15676046 AAGATTTTTAAAGTTGTTGAGCCTCTGCTTA-AAGAGCTTCTTCAAGAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
* * * *
15676094 -GAATTTTAAAGTTGTTGAACTTCTGCTAAGAGGAGCTTTTTCAAGAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
* * *
15676141 AGATTTTTAAAGTTGTTGAGCCTTTGCTAAAAGGAGCTTTTTCAAGAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
* * * * *
15676189 -GAATTTTAAAGTTGTTGAACCTTTACTTAGAGGAGCTTTTCCAAGAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
* * *
15676236 AAGATTTTTAAAGTCGTTGAGCCTCTGCTTAGAGGA-ATTTTTTAAGAT
1 -AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
* * * * *
15676284 GGATTGTTAAAGTTGTTGAGTCTCTACTTAGAGGAGATTTTTCAAGAT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
* * *
15676332 GGATTTTTAAAGTTGTTAAGCCTTTGCTTAGAGGAGCCTTTTT--A-A-
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTTTCAAGAT
* * * *
15676377 A-ATTTTCAAAAGTTGTTTAGCCTTTGCTTAGATGAGACTTTTT-AA-AT
1 AGATTTT-TAAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTTTCAAGAT
* * *
15676424 ---TTTTGAAAGTTGTTGAGCCTCTGCTTAGATGAGCCTTTTC-A-A-
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
* * * *
15676466 A-ATTTTAAAAGTCGTTAAGCCTCTACTTAGAGGAGCCTTTTT
1 AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAG-CTTTTT
15676508 AAATTTTTAA
Statistics
Matches: 390, Mismatches: 57, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
43 7 0.02
44 59 0.15
45 41 0.11
46 28 0.07
47 87 0.22
48 103 0.26
49 65 0.17
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (48 bp):
AGATTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTTTCAAGAT
Found at i:15676178 original size:95 final size:96
Alignment explanation
Indices: 15676002--15676374 Score: 472
Period size: 95 Copynumber: 3.9 Consensus size: 96
15675992 CATATGAGAT
* * *
15676002 TTTTAAAGTTGTTAAACCTCTCCTTAGAGGAGC-TTTTCTAAGATAAGATTTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAACTTCTACTTAGAGGAGCTTTTTC-AAGATAAGATTTTTAAAGTTGTTGA
*
15676066 GCCTCTGCTTAAA-GAGCTTCTTCAAGATGAA
65 GCCTCTGCTTAAAGGAGCTTTTTCAAGATGAA
* *
15676097 TTTTAAAGTTGTTGAACTTCTGCTAAGAGGAGCTTTTTCAAGAT-AGATTTTTAAAGTTGTTGAG
1 TTTTAAAGTTGTTGAACTTCTACTTAGAGGAGCTTTTTCAAGATAAGATTTTTAAAGTTGTTGAG
* *
15676161 CCTTTGCTAAAAGGAGCTTTTTCAAGATGAA
66 CCTCTGCTTAAAGGAGCTTTTTCAAGATGAA
* *
15676192 TTTTAAAGTTGTTGAACCTT-TACTTAGAGGAGCTTTTCCAAGATAAGATTTTTAAAGTCGTTGA
1 TTTTAAAGTTGTTGAA-CTTCTACTTAGAGGAGCTTTTTCAAGATAAGATTTTTAAAGTTGTTGA
* * * *
15676256 GCCTCTGCTTAGAGGA-ATTTTTTAAGATGGA
65 GCCTCTGCTTAAAGGAGCTTTTTCAAGATGAA
* * * *
15676287 TTGTTAAAGTTGTTG-AGTCTCTACTTAGAGGAGATTTTTCAAGAT-GGATTTTTAAAGTTGTTA
1 TT-TTAAAGTTGTTGAACT-TCTACTTAGAGGAGCTTTTTCAAGATAAGATTTTTAAAGTTGTTG
* *
15676350 AGCCTTTGCTTAGAGGAGCCTTTTT
64 AGCCTCTGCTTAAAGGAG-CTTTTT
15676375 AAAATTTTCA
Statistics
Matches: 244, Mismatches: 25, Indels: 16
0.86 0.09 0.06
Matches are distributed among these distances:
94 31 0.13
95 135 0.55
96 73 0.30
97 5 0.02
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (96 bp):
TTTTAAAGTTGTTGAACTTCTACTTAGAGGAGCTTTTTCAAGATAAGATTTTTAAAGTTGTTGAG
CCTCTGCTTAAAGGAGCTTTTTCAAGATGAA
Found at i:15676443 original size:44 final size:44
Alignment explanation
Indices: 15676334--15676562 Score: 273
Period size: 44 Copynumber: 5.2 Consensus size: 44
15676324 TTCAAGATGG
*
15676334 ATTTTT-AAAGTTGTTAAGCCTTTGCTTAGAGGAGCCTTTTTAAA
1 ATTTTTAAAAGTTGTTAAGCCTTTGCTTAGATGAGCCTTTTT-AA
* * *
15676378 ATTTTCAAAAGTTGTTTAGCCTTTGCTTAGATGAGACTTTTTAA
1 ATTTTTAAAAGTTGTTAAGCCTTTGCTTAGATGAGCCTTTTTAA
* * * *
15676422 ATTTTTGAAAGTTGTTGAGCCTCTGCTTAGATGAGCCTTTTCAA
1 ATTTTTAAAAGTTGTTAAGCCTTTGCTTAGATGAGCCTTTTTAA
* * * * *
15676466 AATTTTAAAAGTCGTTAAGCCTCTACTTAGAGGAGCCTTTTTAA
1 ATTTTTAAAAGTTGTTAAGCCTTTGCTTAGATGAGCCTTTTTAA
** * * *
15676510 ATTTTTAAAAGTCATTGAGCCTTTGTTTAGATGAG-CTTTTTTA
1 ATTTTTAAAAGTTGTTAAGCCTTTGCTTAGATGAGCCTTTTTAA
15676553 ATTTTTAAAA
1 ATTTTTAAAA
15676563 ATGTCGTTAA
Statistics
Matches: 159, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
43 17 0.11
44 110 0.69
45 32 0.20
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (44 bp):
ATTTTTAAAAGTTGTTAAGCCTTTGCTTAGATGAGCCTTTTTAA
Found at i:15677909 original size:60 final size:59
Alignment explanation
Indices: 15677817--15678101 Score: 300
Period size: 60 Copynumber: 4.9 Consensus size: 59
15677807 TCCTTAGAGC
* * *
15677817 ATAAAAATTTCAAACAA-GTATTTTTGAGGAAAAGTTGAAGGTATCAATTTTCTTCGAAA
1 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTT-GAAA
* *
15677876 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGGAA
1 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTGAAA
* *
15677936 TTAAAAATTTCAAAAAATATATTTTTGAAGG-AAAGTTAAAAGTATCAATTTTCCTTGAAA
1 ATAAAAATTTCAAAAAATATATTTTTG-AGGAAAAGTTGAAAGTATCAATTTT-CTTGAAA
* ** * * * *
15677996 A-AAAATTTTC-AAAAA-GCA-TTTTAAGGGAAA-TTGAAAGTTTCAATTTTCCTTGAAC
1 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT-CTTGAAA
* * **
15678051 AT-AAAA-TTAAAAAAATATATTTTTTAAAAAAAGTTGAAAGTATCAATTTTC
1 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
15678102 CTTTTATAAA
Statistics
Matches: 190, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
54 2 0.01
55 34 0.18
56 8 0.04
57 10 0.05
58 21 0.11
59 28 0.15
60 77 0.41
61 10 0.05
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (59 bp):
ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTGAAA
Found at i:15679756 original size:12 final size:12
Alignment explanation
Indices: 15679722--15679762 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
15679712 TTATATCTGT
15679722 TAAAATAAATAA
1 TAAAATAAATAA
15679734 -AAAATAAATAA
1 TAAAATAAATAA
* *
15679745 TGAAATATATAA
1 TAAAATAAATAA
15679757 TAAAAT
1 TAAAAT
15679763 TTTTTTGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 11 0.44
12 14 0.56
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (12 bp):
TAAAATAAATAA
Found at i:15683389 original size:6 final size:6
Alignment explanation
Indices: 15683380--15683447 Score: 57
Period size: 6 Copynumber: 10.8 Consensus size: 6
15683370 CTATTATATT
* * *
15683380 TTTTTC TTTTTTC TTTTT- TTTTATT TTTTTA TTTTTT TTCTTTC TTTTTC
1 TTTTTC -TTTTTC TTTTTC TTTT-TC TTTTTC TTTTTC TT-TTTC TTTTTC
*
15683430 TTTCTTC TTCTTC TTTTT
1 TTT-TTC TTTTTC TTTTT
15683448 TATTCTGATC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
5 4 0.08
6 28 0.54
7 20 0.38
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:15683399 original size:10 final size:10
Alignment explanation
Indices: 15683386--15683453 Score: 59
Period size: 10 Copynumber: 6.8 Consensus size: 10
15683376 TATTTTTTTC
15683386 TTTTTTCTTT
1 TTTTTTCTTT
*
15683396 TTTTTTATTT
1 TTTTTTCTTT
15683406 TTTTATT-TTT
1 TTTT-TTCTTT
15683416 TTTCTTTCTTT
1 TTT-TTTCTTT
*
15683427 TTCTTTC-TT
1 TTTTTTCTTT
* *
15683436 CTTCTTCTTT
1 TTTTTTCTTT
*
15683446 TTTATTCT
1 TTTTTTCT
15683454 GATCGATTTG
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
9 6 0.13
10 33 0.70
11 8 0.17
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:15683408 original size:27 final size:28
Alignment explanation
Indices: 15683373--15683448 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 28
15683363 ATTATTACTA
* *
15683373 TTATATTTTT-TTCTTTTTTCTTTTTTT
1 TTATTTTTTTATTCTTTTTTCTTTCTTT
15683400 TTATTTTTTTATT-TTTTTTCTTTCTTT
1 TTATTTTTTTATTCTTTTTTCTTTCTTT
* *
15683427 TTCTTTCTTCTTCTTCTTTTTT
1 TTATTT-TT-TTATTCTTTTTT
15683449 ATTCTGATCG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 27 0.66
28 4 0.10
29 4 0.10
30 6 0.15
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (28 bp):
TTATTTTTTTATTCTTTTTTCTTTCTTT
Found at i:15691063 original size:19 final size:18
Alignment explanation
Indices: 15691032--15691070 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
15691022 AAGCTAGAAA
* *
15691032 AGAAAAAGCAAAAGTGAG
1 AGAAAAAGAAAAAGTCAG
15691050 AGAAAAAGGAAAAAGTCAG
1 AGAAAAA-GAAAAAGTCAG
15691069 AG
1 AG
15691071 CAATCCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.62, C:0.05, G:0.28, T:0.05
Consensus pattern (18 bp):
AGAAAAAGAAAAAGTCAG
Found at i:15696496 original size:48 final size:48
Alignment explanation
Indices: 15696315--15696690 Score: 373
Period size: 48 Copynumber: 7.8 Consensus size: 48
15696305 GAACATATGA
* * * * * *
15696315 GATTTTTAAAGTTGTTAAACTTCTCCTTAAAGGAGC-TTTTCTAAGATAA
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTC-AAGAT-G
* * * *
15696364 GATTTGTAAAGTTGTTGCGCCTCTACTTAAAGGAGCTTTTTTAAGAT-
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATG
* * * *
15696411 GAATTTTAAAGTTGTTGAACCTCTGCTTAGAGAAGCTTTTTCAAGATG
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATG
* * **
15696459 GATTTTTAAAGTTGTTGAGCCTTTGCAAAGAGGAGCTTTTTCAAGAT-
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATG
* * * * *
15696506 GAATTTTAAAGCTGTTGAACCTCTACTTGGAGGAGC-TTTTCTAAGATAA
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTC-AAGAT-G
*** * * *
15696555 GATTTTTAAAGCCATTGAGCCTTTGCTTAGAGGAACTTTTTCAAGATG
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATG
* *
15696603 GATTGTTAAAGTTGTTGAGCCTCTACTTAGAGGAGATTTTTCAAGATG
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATG
* * *
15696651 GATTTTTAAAGTCGTTGAGCCTCTGCTTAGATGGAACTTT
1 GATTTTTAAAGTTGTTGAGCCTCTACTTAGA-GGAGCTTT
15696691 CTAAATTTTA
Statistics
Matches: 269, Mismatches: 51, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
46 5 0.02
47 72 0.27
48 109 0.41
49 74 0.28
50 9 0.03
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (48 bp):
GATTTTTAAAGTTGTTGAGCCTCTACTTAGAGGAGCTTTTTCAAGATG
Found at i:15696600 original size:96 final size:95
Alignment explanation
Indices: 15696318--15696690 Score: 426
Period size: 96 Copynumber: 3.9 Consensus size: 95
15696308 CATATGAGAT
* * * * * * *
15696318 TTTTAAAGTTGTTAAACTTCTCCTTAAAGGAGC-TTTTCTAAGATAAGATTTGTAAAGTTGTTGC
1 TTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTC-AAGAT-AGATTTTTAAAGTCGTTGA
* * * *
15696382 GCCTCTACTTAAAGGAGCTTTTTTAAGATGAA
64 GCCTCTGCTTAGAGGAACTTTTTCAAGATGAA
* * * *
15696414 TTTTAAAGTTGTTGAACCTCTGCTTAGAGAAGCTTTTTCAAGATGGATTTTTAAAGTTGTTGAGC
1 TTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTCGTTGAGC
* ** *
15696479 CTTTGCAAAGAGGAGCTTTTTCAAGATGAA
66 CTCTGCTTAGAGGAACTTTTTCAAGATGAA
* * * *
15696509 TTTTAAAGCTGTTGAACCTCTACTTGGAGGAGC-TTTTCTAAGATAAGATTTTTAAAGCCATTGA
1 TTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTC-AAGAT-AGATTTTTAAAGTCGTTGA
* *
15696573 GCCTTTGCTTAGAGGAACTTTTTCAAGATGGA
64 GCCTCTGCTTAGAGGAACTTTTTCAAGATGAA
* * *
15696605 TTGTTAAAGTTGTTGAGCCTCTACTTAGAGGAGATTTTTCAAGATGGATTTTTAAAGTCGTTGAG
1 TT-TTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTCGTTGAG
15696670 CCTCTGCTTAGATGGAACTTT
65 CCTCTGCTTAGA-GGAACTTT
15696691 CTAAATTTTA
Statistics
Matches: 237, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
94 5 0.02
95 76 0.32
96 106 0.45
97 45 0.19
98 5 0.02
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (95 bp):
TTTTAAAGTTGTTGAACCTCTACTTAGAGGAGCTTTTTCAAGATAGATTTTTAAAGTCGTTGAGC
CTCTGCTTAGAGGAACTTTTTCAAGATGAA
Found at i:15696719 original size:44 final size:43
Alignment explanation
Indices: 15696658--15696852 Score: 155
Period size: 44 Copynumber: 4.4 Consensus size: 43
15696648 ATGGATTTTT
15696658 AAAGTCGTTGAGCCTCTGCTTAGATGGAA-CTTTCTAAATTTTAA
1 AAAGTCGTTGAGCCTCTGCTTAGAT--AACCTTTCTAAATTTTAA
* * *
15696702 AAAGTTGTTGAGCCTCTGCTTAGATAAGCCTTTTTAAATTTTTA
1 AAAGTCGTTGAGCCTCTGCTTAGATAA-CCTTTCTAAATTTTAA
* * * *
15696746 AAAGTCATTAAGCCTCTACTTAGA-AGAGCCTCTT-TAAATTTTTA
1 AAAGTCGTTGAGCCTCTGCTTAGATA-A-CCT-TTCTAAATTTTAA
* * * * * *
15696790 AAAGTCATTAAGCCTCTGATCAGA-AGAGCTTTTTAAATTTTTAA
1 AAAGTCGTTGAGCCTCTGCTTAGATA-ACCTTTCTAAA-TTTTAA
*
15696834 AAATGTCGTTGAACCTCTG
1 AAA-GTCGTTGAGCCTCTG
15696853 TGACACTCAT
Statistics
Matches: 129, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
42 4 0.03
43 7 0.05
44 104 0.81
45 14 0.11
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (43 bp):
AAAGTCGTTGAGCCTCTGCTTAGATAACCTTTCTAAATTTTAA
Found at i:15698433 original size:61 final size:60
Alignment explanation
Indices: 15698101--15698478 Score: 451
Period size: 60 Copynumber: 6.2 Consensus size: 60
15698091 TCCTTAAAGT
* * * *
15698101 ATAAAAATTTCAAAAAA-GTATTTTTGAGGAAAAATGGAATGTATCAAATTTT-CTTGAAA
1 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATC-AATTTTCCTTGAAA
* * * *
15698160 ATAAAAACTTCAAGAAAATATATTTTTGAGTAAAAGTT-AAAGTATCAATTTT-TTTCAAAA
1 ATAAAAATTTCAA-AAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAA
15698220 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
1 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
* * * *
15698280 ATAAAATTTTCAAAAAATACATTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAC
1 ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
* * ** *
15698340 ATAAAATTTTCAAAAAAAAAATATTTTAAAGGAAAAATTGAAAGTATCAATTTTCCTTGAAAA
1 ATAAAAATTTC--AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG-AAA
* * *
15698403 ATAAAATTTTCAAGAAAA-ACATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAA
1 ATAAAAATTTCAA-AAAATATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTTGAAA
* *
15698464 ATAGAAATATCAAAA
1 ATAAAAATTTCAAAA
15698479 TGCTTTAAGA
Statistics
Matches: 280, Mismatches: 29, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
59 43 0.15
60 112 0.40
61 59 0.21
62 53 0.19
63 13 0.05
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (60 bp):
ATAAAAATTTCAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
Found at i:15698455 original size:28 final size:28
Alignment explanation
Indices: 15698424--15698510 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
15698414 AAGAAAAACA
15698424 TTTTTAAGGAAAAGTTGAAAGTATCAAT
1 TTTTTAAGGAAAAGTTGAAAGTATCAAT
**** *
15698452 TTTTCCTTGAAAA-TAGAAA-TATCAAAAT
1 TTTTTAAGGAAAAGTTGAAAGTATC--AAT
** *
15698480 GCTTTAAGAAAAAGTTGAAAGTATCAAT
1 TTTTTAAGGAAAAGTTGAAAGTATCAAT
15698508 TTT
1 TTT
15698511 CTTTATATAA
Statistics
Matches: 40, Mismatches: 15, Indels: 8
0.63 0.24 0.13
Matches are distributed among these distances:
26 4 0.10
27 5 0.12
28 22 0.55
29 5 0.12
30 4 0.10
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (28 bp):
TTTTTAAGGAAAAGTTGAAAGTATCAAT
Found at i:15698515 original size:30 final size:29
Alignment explanation
Indices: 15698426--15698515 Score: 80
Period size: 30 Copynumber: 3.1 Consensus size: 29
15698416 GAAAAACATT
15698426 TTTAAGGAAAAGTTGAAAGTATCAATTTTTC
1 TTTAA-GAAAAGTTGAAAGTATCAA-TTTTC
* * ** *
15698457 CTT--GAAAA-TAGAAA-TATCAAAATGC
1 TTTAAGAAAAGTTGAAAGTATCAATTTTC
15698482 TTTAAGAAAAAGTTGAAAGTATCAATTTTC
1 TTTAAG-AAAAGTTGAAAGTATCAATTTTC
15698512 TTTA
1 TTTA
15698516 TATAAAAGCA
Statistics
Matches: 44, Mismatches: 10, Indels: 11
0.68 0.15 0.17
Matches are distributed among these distances:
25 4 0.09
26 6 0.14
27 6 0.14
28 9 0.20
29 5 0.11
30 12 0.27
31 2 0.05
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (29 bp):
TTTAAGAAAAGTTGAAAGTATCAATTTTC
Found at i:15700790 original size:253 final size:255
Alignment explanation
Indices: 15700317--15700831 Score: 720
Period size: 253 Copynumber: 2.0 Consensus size: 255
15700307 AATGGATTAT
15700317 TTTGGCTCTATAGATGTAGCTGAACTATGCTTAGTTCCAGATGTGGTCATCCCACCAAAATTTAA
1 TTTGGCTCTATAGATGTAGCTGAACTATGCTTAGTTCCAGATGTGGTCATCCCACCAAAATTTAA
* *
15700382 AGTCCCCAACTTTGAAAAAATACGATTAGATAAAAATATCTGATAACTCATGTTACCATGTATTA
66 AGTCCCCAACTTTGAAAAAATAC-ATGAGATAAAAATATCAGATAACTCATGTTACCATGTATTA
* * *
15700447 CCGTAAAATGGTTGCTTATGCTTATGATGAGAAACTACTAATGCATGTGTTTTAAGATAGTCTCA
130 CCGTAAAATGGCTGCTTATGCTCATGATGAGAAACTACTAATGCATGTGTTTCAAGATAGTCTCA
*
15700512 CTAGCTCAACTGCGAGGTAGTATGTCCAGTTAGACCAAACCCATATCCAATCCTAGAACAA
195 CTAGCTCAACTGCGAGCTAGTATGTCCAGTTAGACCAAACCCATATCCAATCCTAGAACAA
*
15700573 TTTGGCTTTATAGATGTAG-TGAACTATGCTTAGTTCCAGATGTGGTCATCCCACCAAAAATTTA
1 TTTGGCTCTATAGATGTAGCTGAACTATGCTTAGTTCCAGATGTGGTCATCCCACC-AAAATTTA
** * * * *
15700637 AAG-CCTTGAA-TTTGAAAAATATA-ATGGGA-CAAAATGTCCAG-TAACTTATGTTACCATGTA
65 AAGTCC-CCAACTTTGAAAAA-ATACATGAGATAAAAATAT-CAGATAACTCATGTTACCATGTA
**
15700697 TTGTCGTAAAATGGCTGCTTATGCTCATGATGAGAAACTACTAATGCATGTGTTTCAAGATAGTC
127 TTACCGTAAAATGGCTGCTTATGCTCATGATGAGAAACTACTAATGCATGTGTTTCAAGATAGTC
* * * * * * * *
15700762 TCACTGGCTC-AGTCGTGAGCTGGTATGTCCAGTTAGACCGAACCCGTATCTAATCCTAGAATAA
192 TCACTAGCTCAACT-GCGAGCTAGTATGTCCAGTTAGACCAAACCCATATCCAATCCTAGAACAA
15700826 TTTGGC
1 TTTGGC
15700832 AAAGGCATTT
Statistics
Matches: 231, Mismatches: 23, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
252 2 0.01
253 142 0.61
254 6 0.03
255 47 0.20
256 34 0.15
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (255 bp):
TTTGGCTCTATAGATGTAGCTGAACTATGCTTAGTTCCAGATGTGGTCATCCCACCAAAATTTAA
AGTCCCCAACTTTGAAAAAATACATGAGATAAAAATATCAGATAACTCATGTTACCATGTATTAC
CGTAAAATGGCTGCTTATGCTCATGATGAGAAACTACTAATGCATGTGTTTCAAGATAGTCTCAC
TAGCTCAACTGCGAGCTAGTATGTCCAGTTAGACCAAACCCATATCCAATCCTAGAACAA
Found at i:15702307 original size:19 final size:18
Alignment explanation
Indices: 15702285--15702320 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
15702275 GGTCTAAAAT
15702285 AAAAAAAAGAAAGAAAAGC
1 AAAAAAAAGAAA-AAAAGC
*
15702304 AAAACAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAG
15702321 GGGAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.81, C:0.06, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAAAAAGAAAAAAAGC
Found at i:15702720 original size:16 final size:15
Alignment explanation
Indices: 15702688--15702814 Score: 62
Period size: 17 Copynumber: 7.9 Consensus size: 15
15702678 AATGATAGGT
*
15702688 GAAAGAATGAAAGAAA
1 GAAA-AATGAAAAAAA
15702704 GAAAAATGAGAAAAAA
1 GAAAAATGA-AAAAAA
*
15702720 GAAAAAAAGAAAGAAAA
1 G-AAAAATGAAA-AAAA
*
15702737 -ACAAAA-AAAAATGAAA
1 GA-AAAATGAAAA--AAA
*
15702753 AAAAAATGAAAAAGAAA
1 GAAAAATG-AAAA-AAA
*
15702770 AAAAAATGAAAGAATAA
1 GAAAAATGAAA-AA-AA
* *
15702787 AAAAAATGAAAATAGA
1 GAAAAATGAAAA-AAA
15702803 GAAAAA-GAAAAA
1 GAAAAATGAAAAA
15702815 CTCAAATTGA
Statistics
Matches: 93, Mismatches: 6, Indels: 26
0.74 0.05 0.21
Matches are distributed among these distances:
14 2 0.02
15 14 0.15
16 34 0.37
17 39 0.42
18 4 0.04
ACGTcount: A:0.78, C:0.01, G:0.15, T:0.06
Consensus pattern (15 bp):
GAAAAATGAAAAAAA
Found at i:15702729 original size:28 final size:28
Alignment explanation
Indices: 15702697--15702780 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
15702687 TGAAAGAATG
*
15702697 AAAGAAAGAAAAATGAGAAAAAA-GAAAA
1 AAAGAAAGAAAAA-GAAAAAAAATGAAAA
*
15702725 AAAGAAAGAAAAACAAAAAAAAATGAAAA
1 AAAGAAAGAAAAA-GAAAAAAAATGAAAA
*
15702754 AAA-AATGAAAAAGAAAAAAAAATGAAA
1 AAAGAAAGAAAAAG-AAAAAAAATGAAA
15702781 GAATAAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 41 0.84
29 8 0.16
ACGTcount: A:0.81, C:0.01, G:0.13, T:0.05
Consensus pattern (28 bp):
AAAGAAAGAAAAAGAAAAAAAATGAAAA
Found at i:15702736 original size:17 final size:16
Alignment explanation
Indices: 15702696--15702797 Score: 77
Period size: 17 Copynumber: 6.2 Consensus size: 16
15702686 GTGAAAGAAT
**
15702696 GAAAGAAAGAAAAATGA
1 GAAAGAAA-AAAAAAAA
*
15702713 GAAA-AAAGAAAAAAA
1 GAAAGAAAAAAAAAAA
15702728 GAAAGAAAAACAAAAAA
1 GAAAGAAAAA-AAAAAA
15702745 -AAATGAAAAAAAAATGAA
1 GAAA-GAAAAAAAAA--AA
*
15702763 -AAAG-AAAAAAAAAT
1 GAAAGAAAAAAAAAAA
*
15702777 GAAAGAATAAAAAAAAT
1 GAAAGAA-AAAAAAAAA
15702794 GAAA
1 GAAA
15702798 ATAGAGAAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
14 1 0.01
15 13 0.18
16 23 0.32
17 30 0.42
18 5 0.07
ACGTcount: A:0.79, C:0.01, G:0.14, T:0.06
Consensus pattern (16 bp):
GAAAGAAAAAAAAAAA
Found at i:15702760 original size:49 final size:48
Alignment explanation
Indices: 15702700--15702792 Score: 127
Period size: 49 Copynumber: 1.9 Consensus size: 48
15702690 AAGAATGAAA
*
15702700 GAAAGAAAAATGAGAAAA-AAGAAAAAAA-GAAAGAAAAACAAAAAAAAAT
1 GAAAAAAAAATGA-AAAAGAA-AAAAAAATGAAAGAAAAA-AAAAAAAAAT
*
15702749 GAAAAAAAAATGAAAAAGAAAAAAAAATGAAAGAATAAAAAAAA
1 GAAAAAAAAATGAAAAAGAAAAAAAAATGAAAGAAAAAAAAAAA
15702793 TGAAAATAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
48 17 0.43
49 23 0.57
ACGTcount: A:0.81, C:0.01, G:0.13, T:0.05
Consensus pattern (48 bp):
GAAAAAAAAATGAAAAAGAAAAAAAAATGAAAGAAAAAAAAAAAAAAT
Found at i:15702767 original size:34 final size:33
Alignment explanation
Indices: 15702729--15702808 Score: 92
Period size: 34 Copynumber: 2.3 Consensus size: 33
15702719 AGAAAAAAAG
15702729 AAAGAAAAACAAAA-AAA-AATGAAAAAAAAATGAA
1 AAAGAAAAA-AAAAGAAAGAAT--AAAAAAAATGAA
15702763 AAAGAAAAAAAAATGAAAGAATAAAAAAAATGAA
1 AAAGAAAAAAAAA-GAAAGAATAAAAAAAATGAA
*
15702797 AATAGAGAAAAA
1 AA-AGAAAAAAA
15702809 GAAAAACTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
33 4 0.10
34 23 0.56
35 11 0.27
36 3 0.07
ACGTcount: A:0.80, C:0.01, G:0.11, T:0.07
Consensus pattern (33 bp):
AAAGAAAAAAAAAGAAAGAATAAAAAAAATGAA
Found at i:15704061 original size:17 final size:16
Alignment explanation
Indices: 15704040--15704089 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
15704030 GAATCTTTAT
15704040 TTCTTGCGAATTTGAA
1 TTCTTGCGAATTTGAA
* *
15704056 TGTCTTGTGAATCTTCAA
1 T-TCTTGCGAAT-TTGAA
*
15704074 TTCTTGCGAATCTGAA
1 TTCTTGCGAATTTGAA
15704090 AGCCGTGCGA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
16 4 0.15
17 18 0.67
18 5 0.19
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (16 bp):
TTCTTGCGAATTTGAA
Found at i:15704102 original size:34 final size:34
Alignment explanation
Indices: 15704000--15704256 Score: 232
Period size: 34 Copynumber: 7.5 Consensus size: 34
15703990 AGAAGTTTTT
* * * *
15704000 TTCAATTCTTGTGAATCTAAAAGTTTTGACGAATC
1 TTCAATTCTTGCGAATCTGAAAGCTTTG-CAAATC
* * * *
15704035 TTTATTTCTTGCGAATTTGAATGTCTTGTG--AATC
1 TTCAATTCTTGCGAATCTGAAAG-CTT-TGCAAATC
** *
15704069 TTCAATTCTTGCGAATCTGAAAGCCGTGCGAATC
1 TTCAATTCTTGCGAATCTGAAAGCTTTGCAAATC
** * *
15704103 TTCAATTCTTATGAATCTAAAAACTTTGCAAATC
1 TTCAATTCTTGCGAATCTGAAAGCTTTGCAAATC
* * *
15704137 TCCAATTCTTGCGAATATGAAAACTTTGCAAATC
1 TTCAATTCTTGCGAATCTGAAAGCTTTGCAAATC
* * *
15704171 TCCAATTCTTGTGAATCTGAAAACTTTGCAAATC
1 TTCAATTCTTGCGAATCTGAAAGCTTTGCAAATC
* ** *
15704205 -TCAAACTCTTATGAATCTGAAAGCCTTGCAAATC
1 TTC-AATTCTTGCGAATCTGAAAGCTTTGCAAATC
15704239 TTCAATTCTTGCGAATCT
1 TTCAATTCTTGCGAATCT
15704257 TCAATTATTA
Statistics
Matches: 181, Mismatches: 35, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
32 2 0.01
33 2 0.01
34 154 0.85
35 19 0.10
36 2 0.01
37 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (34 bp):
TTCAATTCTTGCGAATCTGAAAGCTTTGCAAATC
Found at i:15704204 original size:17 final size:17
Alignment explanation
Indices: 15704116--15704205 Score: 51
Period size: 17 Copynumber: 5.3 Consensus size: 17
15704106 AATTCTTATG
*
15704116 AATCTAAAAACTTTGCA
1 AATCTGAAAACTTTGCA
** * *
15704133 AATCT-CCAATTCTTGCG
1 AATCTGAAAACT-TTGCA
*
15704150 AATATGAAAACTTTGCA
1 AATCTGAAAACTTTGCA
* **
15704167 AATCTCCAATTCTTGTG--
1 AATCT-GAAAACTT-TGCA
15704184 AATCTGAAAACTTTGCA
1 AATCTGAAAACTTTGCA
15704201 AATCT
1 AATCT
15704206 CAAACTCTTA
Statistics
Matches: 51, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
15 2 0.04
16 8 0.16
17 31 0.61
18 8 0.16
19 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (17 bp):
AATCTGAAAACTTTGCA
Found at i:15704249 original size:17 final size:17
Alignment explanation
Indices: 15704229--15704262 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15704219 ATCTGAAAGC
15704229 CTTGCAAATCTTCAATT
1 CTTGCAAATCTTCAATT
*
15704246 CTTGCGAATCTTCAATT
1 CTTGCAAATCTTCAATT
15704263 ATTATGAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (17 bp):
CTTGCAAATCTTCAATT
Found at i:15704271 original size:17 final size:16
Alignment explanation
Indices: 15704235--15704287 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
15704225 AAGCCTTGCA
**
15704235 AATCTTCAATTCTTGCG
1 AATCTTCAATT-TTATG
15704252 AATCTTCAATTATTATG
1 AATCTTCAATT-TTATG
*
15704269 AATCTCCAATTTTATG
1 AATCTTCAATTTTATG
15704285 AAT
1 AAT
15704288 TTGAAATTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 8 0.25
17 24 0.75
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.43
Consensus pattern (16 bp):
AATCTTCAATTTTATG
Found at i:15704644 original size:85 final size:79
Alignment explanation
Indices: 15704504--15704718 Score: 189
Period size: 85 Copynumber: 2.6 Consensus size: 79
15704494 TTCATCTTGA
* * * * * * * * * *
15704504 TCATTTTGTTTTGGGTTTCGGCTTATTCTATATCTTTCTTTGGTTCAGTCCAAGTTATTTATCTT
1 TCATTTCGTTTTGGATTTTGGCTTATGCTAGATCCTTCTTTGCTT-AGTCCAAGTTAATTAACTC
*
15704569 TGACTTCAGTTTCATTCAGG
65 AGACTTC-----CATTCAGG
* *
15704589 TCATTTCGTTTTGGATTTTGGCTTATGCTAGATCCTTCTTTAGCTTAGTCTAAGTTAATTAAGTC
1 TCATTTCGTTTTGGATTTTGGCTTATGCTAGATCCTTCTTT-GCTTAGTCCAAGTTAATTAACTC
15704654 AGACTTCCATTCAGG
65 AGACTTCCATTCAGG
* * * *
15704669 TCATTTCATTTTGAATTTTGACTTATG-TCAGATTCTTCTTTGGCTTAGTC
1 TCATTTCGTTTTGGATTTTGGCTTATGCT-AGATCCTTCTTT-GCTTAGTC
15704719 AAAATTGTTC
Statistics
Matches: 110, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.01
80 51 0.46
85 55 0.50
86 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (79 bp):
TCATTTCGTTTTGGATTTTGGCTTATGCTAGATCCTTCTTTGCTTAGTCCAAGTTAATTAACTCA
GACTTCCATTCAGG
Found at i:15706377 original size:60 final size:60
Alignment explanation
Indices: 15706233--15706524 Score: 383
Period size: 60 Copynumber: 4.9 Consensus size: 60
15706223 TCTTTAAAGT
* *
15706233 ATAAAAATTTCAAAAAA-GTATTTTTAATGAAAAGTTGAAAGTATCAATTTTTTTTGAAA
1 ATAAAAATTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAA
* * *
15706292 ATAAAAACTTCAAGAAAATATATTTTTCAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAA
1 ATAAAAATTTCAA-AAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAA
** *
15706353 ATAAAAATTTCAAAAAATATATTTTCGAGGAAAAGTTAAAAGTATCAATTTTTTTTGAAA
1 ATAAAAATTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAA
* * *
15706413 ATAAAAATTTCAAAAAATATATTTTTGA-GAGAAAGTTGAAAGTATCAA-TTTTCTTGAAC
1 ATAAAAATTTCAAAAAATATATTTTTAAGGA-AAAGTTGAAAGTATCAATTTTTTTTGAAA
* * * * * *
15706472 ATAGAAATGTCAAAAAAAACATGCTTTAAGAAAAAGTTGAAAGTATCAATTTT
1 ATAAAAATTTCAAAAAATATAT-TTTTAAGGAAAAGTTGAAAGTATCAATTTT
15706525 CCTTGTATAA
Statistics
Matches: 206, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
59 41 0.20
60 111 0.54
61 54 0.26
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (60 bp):
ATAAAAATTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTGAAA
Found at i:15706547 original size:23 final size:23
Alignment explanation
Indices: 15706521--15706564 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
15706511 AAAGTATCAA
*
15706521 TTTTCCTTGTATAAA-AGCATAAT
1 TTTTCCTTATA-AAATAGCATAAT
*
15706544 TTTTTCTTATAAAATAGCATA
1 TTTTCCTTATAAAATAGCATA
15706565 TAAAAAGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (23 bp):
TTTTCCTTATAAAATAGCATAAT
Found at i:15707231 original size:22 final size:22
Alignment explanation
Indices: 15707206--15707255 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
15707196 CACCATTTTG
15707206 TATTTTATTATTTTATTATTAT
1 TATTTTATTATTTTATTATTAT
* * * * *
15707228 TATTATATTTTTTTCTTTTTTT
1 TATTTTATTATTTTATTATTAT
15707250 TATTTT
1 TATTTT
15707256 TTTCTTCTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (22 bp):
TATTTTATTATTTTATTATTAT
Found at i:15708600 original size:186 final size:187
Alignment explanation
Indices: 15708389--15708777 Score: 416
Period size: 188 Copynumber: 2.1 Consensus size: 187
15708379 AAAAAGTTAT
* * ** *
15708389 AATTAAATAAAAATAATAAAAATGTA-AGAAAGGAAATTTTTATCTGACGATGAAATTC-AAAGG
1 AATTAAATAAAAATAATAAAAATGTAGAAAAAAGAAA-TTTTATCCAACGATGAAATTCTAAAAG
** *
15708452 TACTCCAAGTAATGATAC-CTATGAAATCTCTAGGTGAGAAGATTTTTTTTTAAATAATACCAGT
65 TACTCCAAGTAATGATACTCTACAAAATCTATAGGTGAGAAGATTTTTTTTTAAATAATACCAGT
* * *
15708516 GTATTGGAGTATTTATA-AAAAATTTTCAACATAATCAAAATTTTTCTTCTTACTAATA
130 GTATTGGAATATTTATAGAAAAA-CTTCAACATAATAAAAATTTTTCTTCTTACTAATA
* * * **
15708574 AATTAAAATAATAATAATATAAATGTAGAAAAAAGAAATTTTATCCAATGATGGGATTCTAAAAG
1 AATT-AAATAAAAATAATAAAAATGTAGAAAAAAGAAATTTTATCCAACGATGAAATTCTAAAAG
* *** * * * * * *
15708639 TATTTTGAGTAGTGGTGCTTTACAAAATCTATAGGTGAGGAGATTTTTTTTTAAATATTACCAGT
65 TACTCCAAGTAATGATACTCTACAAAATCTATAGGTGAGAAGATTTTTTTTTAAATAATACCAGT
*
15708704 GTATTGGAATATTTATAGAAAAACTTCAATATAATAAAAATTCCTTT-TTCCTT-C-AA-A
130 GTATTGGAATATTTATAGAAAAACTTCAACATAATAAAAATT--TTTCTT-CTTACTAATA
15708761 AATTTAAATAAAAATAA
1 AA-TTAAATAAAAATAA
15708778 AAATCAATAA
Statistics
Matches: 167, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
185 4 0.02
186 36 0.22
187 37 0.22
188 76 0.46
189 8 0.05
190 6 0.04
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (187 bp):
AATTAAATAAAAATAATAAAAATGTAGAAAAAAGAAATTTTATCCAACGATGAAATTCTAAAAGT
ACTCCAAGTAATGATACTCTACAAAATCTATAGGTGAGAAGATTTTTTTTTAAATAATACCAGTG
TATTGGAATATTTATAGAAAAACTTCAACATAATAAAAATTTTTCTTCTTACTAATA
Found at i:15721447 original size:16 final size:15
Alignment explanation
Indices: 15721426--15721483 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 15
15721416 TTATTTATTT
15721426 AAAAAAATATAAATAC
1 AAAAAAATATAAA-AC
* *
15721442 AAAAAAATACAAAAAA
1 AAAAAAATA-TAAAAC
15721458 AAGAAAAATACTAAAAC
1 AA-AAAAATA-TAAAAC
15721475 AAAAAAATA
1 AAAAAAATA
15721484 ATGGATAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
16 19 0.53
17 17 0.47
ACGTcount: A:0.79, C:0.07, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAAAAATATAAAAC
Found at i:15721464 original size:18 final size:19
Alignment explanation
Indices: 15721444--15721478 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
15721434 ATAAATACAA
15721444 AAAAATAC-AAAA-AAAAG
1 AAAAATACTAAAACAAAAG
15721461 AAAAATACTAAAACAAAA
1 AAAAATACTAAAACAAAA
15721479 AAATAATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.80, C:0.09, G:0.03, T:0.09
Consensus pattern (19 bp):
AAAAATACTAAAACAAAAG
Found at i:15722686 original size:9 final size:10
Alignment explanation
Indices: 15722654--15722687 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
15722644 TAAATCTTAT
15722654 AAAATAATACA
1 AAAATAATA-A
15722665 AAAATAATAA
1 AAAATAATAA
*
15722675 AAAATAAGAA
1 AAAATAATAA
15722685 AAA
1 AAA
15722688 GAAATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (10 bp):
AAAATAATAA
Found at i:15727861 original size:10 final size:10
Alignment explanation
Indices: 15727842--15727871 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
15727832 TGATGAAATC
15727842 ATAA-AAAAA
1 ATAAGAAAAA
15727851 ATAAGAAAAA
1 ATAAGAAAAA
15727861 ATAAGAAAAA
1 ATAAGAAAAA
15727871 A
1 A
15727872 AATGGAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (10 bp):
ATAAGAAAAA
Found at i:15728554 original size:21 final size:22
Alignment explanation
Indices: 15728530--15728573 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
15728520 AAGAAAAGTC
*
15728530 AAAAAATC-CAAATTG-TGAAG
1 AAAAAAACACAAATTGATGAAG
*
15728550 AAAAAAACAGAAATTGATGAAG
1 AAAAAAACACAAATTGATGAAG
15728572 AA
1 AA
15728574 TAAGTAGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 6 0.30
22 7 0.35
ACGTcount: A:0.61, C:0.07, G:0.16, T:0.16
Consensus pattern (22 bp):
AAAAAAACACAAATTGATGAAG
Found at i:15728836 original size:34 final size:35
Alignment explanation
Indices: 15728793--15728912 Score: 120
Period size: 34 Copynumber: 3.3 Consensus size: 35
15728783 AGTATTTATG
15728793 GAAAAGACATTTACACTTCATGTA-CATC-TTTTAA
1 GAAAAGACATTTACACTTCATG-AGCATCATTTTAA
* *
15728827 GAAAAGACATTTGCATCTT-ATGAGCATCATTCTAA
1 GAAAAGACATTTACA-CTTCATGAGCATCATTTTAA
* * *
15728862 TAAAAGACATTTACATTTCATTTGCATCATCATTTTAA
1 GAAAAGACATTTACACTTCA--TG-AGCATCATTTTAA
15728900 GAAAAAGACATTT
1 G-AAAAGACATTT
15728913 GCATCATAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
33 1 0.01
34 23 0.33
35 22 0.31
37 2 0.03
38 11 0.16
39 11 0.16
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (35 bp):
GAAAAGACATTTACACTTCATGAGCATCATTTTAA
Found at i:15728889 original size:35 final size:35
Alignment explanation
Indices: 15728793--15728891 Score: 112
Period size: 35 Copynumber: 2.9 Consensus size: 35
15728783 AGTATTTATG
* * *
15728793 GAAAAGACATTTACACTTCATGTACATC-TTTTAA
1 GAAAAGACATTTACATTTCATGTGCATCATTCTAA
* *
15728827 GAAAAGACATTTGCATCTT-ATGAGCATCATTCTAA
1 GAAAAGACATTTACAT-TTCATGTGCATCATTCTAA
* *
15728862 TAAAAGACATTTACATTTCATTTGCATCAT
1 GAAAAGACATTTACATTTCATGTGCATCAT
15728892 CATTTTAAGA
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
34 23 0.43
35 30 0.57
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.35
Consensus pattern (35 bp):
GAAAAGACATTTACATTTCATGTGCATCATTCTAA
Found at i:15729431 original size:99 final size:99
Alignment explanation
Indices: 15729234--15729483 Score: 315
Period size: 99 Copynumber: 2.5 Consensus size: 99
15729224 TTTGAATTTG
* * * * *
15729234 CATTTGCATTTTTTCGGTGGTGATAT-TGAGTATTAAAG-CTGAAATTATATTTTCTTAATGGTG
1 CATTTGCATATTTTCGGTGGTGATATCTGAGT-TTAAAGTTTGAATTTACATTTTCTCAATGGTG
* * *
15729297 ATATTTAAGTTTCCTTCGGTGGTGATATCCAAAGT
65 AGATTTAAGTTTCCTTCAGTGGTAATATCCAAAGT
*
15729332 CATTTGCATATTTTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTACATTTTCTCAATGGTGA
1 CATTTGCATATTTTCGGTGGTGATATCTGAGTTTAAAGTTTGAATTTACATTTTCTCAATGGTGA
* * ***
15729397 GATTTGAGTTTCTTTCAGTGGTAATATTTGAAGT
66 GATTTAAGTTTCCTTCAGTGGTAATATCCAAAGT
* * * *
15729431 CATTTGGATCTTTTCGATGGTGATATCTGAGTTTAAAGTTTGAATTTGCATTT
1 CATTTGCATATTTTCGGTGGTGATATCTGAGTTTAAAGTTTGAATTTACATTT
15729484 GTATTTTCTC
Statistics
Matches: 131, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 31 0.24
99 100 0.76
ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45
Consensus pattern (99 bp):
CATTTGCATATTTTCGGTGGTGATATCTGAGTTTAAAGTTTGAATTTACATTTTCTCAATGGTGA
GATTTAAGTTTCCTTCAGTGGTAATATCCAAAGT
Found at i:15729484 original size:48 final size:48
Alignment explanation
Indices: 15729431--15729531 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
15729421 TATTTGAAGT
* * *
15729431 CATTTGGATCTTT-TCGATGGTGATATCTGAGT-TTAAAGTTTGAATTTG
1 CATTTGGAT-TTTCTCAATGGTGATATCCGAGTATTAAAGCTTGAA-TTG
*
15729479 CATTTGTATTTTCTCAATGGTGATATCCGAGTATTAAAGCTTGAATTG
1 CATTTGGATTTTCTCAATGGTGATATCCGAGTATTAAAGCTTGAATTG
15729527 CATTT
1 CATTT
15729532 TCTTGATGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
47 3 0.06
48 33 0.70
49 11 0.23
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.45
Consensus pattern (48 bp):
CATTTGGATTTTCTCAATGGTGATATCCGAGTATTAAAGCTTGAATTG
Found at i:15729531 original size:147 final size:147
Alignment explanation
Indices: 15729349--15729630 Score: 372
Period size: 147 Copynumber: 1.9 Consensus size: 147
15729339 ATATTTTCGG
* * *
15729349 TGGTGATATCCGAGTTTAAAGTTTGAATTTACATTTTCTCAATGGTGAGATTTGAGTTTCTTTCA
1 TGGTGATATCCGAGTTTAAAGCTTGAATTTACATTTTCTCAATGGTGAGATTCGAGTTTCCTTCA
* * * * * *
15729414 GTGGTAATATTTGAAGTCATTTGGATCTTTTCGATGGTGATA-TCTGAGT-TTAAAGTTTGAATT
66 GTGGCAATATTCGAAGTCATTTGCATCTTCTCGATGGTGATATTC-AAGTATTAAAGCTTGAA-T
15729477 TGCATTTGTATTTTCTCAA
129 TGCATTTGTATTTTCTCAA
* ** *
15729496 TGGTGATATCCGAGTATTAAAGCTTGAA-TTGCATTTTCTTGATGGTGATATTCGAGTTTCCTTC
1 TGGTGATATCCGAGT-TTAAAGCTTGAATTTACATTTTCTCAATGGTGAGATTCGAGTTTCCTTC
* * *
15729560 GGTGGCAATATTCGAAGTCATTTGCATGTTCTCGGTGGTGATATTCAAGTATTAAAGCTTGAATT
65 AGTGGCAATATTCGAAGTCATTTGCATCTTCTCGATGGTGATATTCAAGTATTAAAGCTTGAATT
15729625 GCATTT
130 GCATTT
15729631 TCTCGATGAT
Statistics
Matches: 116, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
147 92 0.79
148 24 0.21
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (147 bp):
TGGTGATATCCGAGTTTAAAGCTTGAATTTACATTTTCTCAATGGTGAGATTCGAGTTTCCTTCA
GTGGCAATATTCGAAGTCATTTGCATCTTCTCGATGGTGATATTCAAGTATTAAAGCTTGAATTG
CATTTGTATTTTCTCAA
Found at i:15729632 original size:246 final size:246
Alignment explanation
Indices: 15729197--15729862 Score: 852
Period size: 246 Copynumber: 2.7 Consensus size: 246
15729187 TCTTGAAATC
* *
15729197 ACTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGCATTTTTTCGGTGGTGATAT-T
1 ACTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGTATTTTTTCGGTGGTGATATCC
** * **
15729261 GAGTATTAAAGC-TGAAATTATATTTTCTTAATGGTGATATTTAAGTTTCCTTCGGTGGTGATAT
66 GAGTATTAAAGCTTG-AATTGCATTTTCTTGATGGTGATATTCGAGTTTCCTTCGGTGGTGATAT
* * * *
15729325 CCAAAGTCATTTGCATATTTTCGGTGGTGATATCCGAGTTTAAAGTTTGAATTTACATTTTCTCA
130 CCGAAGTCATTTGCATATTCTCGGTGGTGATATCCAAGTTTAAAGCTTGAATTTACATTTTCTCA
* * * * *** ** * *
15729390 ATGGTGAGATTTGAGTTTCTTTCAGTGGTAATATTTGAAGTCATTTGGATCT
195 ATGATAAGATTCGAGTTTCCTTCAGTAACAATATCCGAAGCCATTTGCATCT
** * * **
15729442 TTTCGATGGTGATATCTGAGTTTAAAGTTTGAATTTGCATTTGTATTTTCTCAATGGTGATATCC
1 ACTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGTATTTTTTCGGTGGTGATATCC
** *
15729507 GAGTATTAAAGCTTGAATTGCATTTTCTTGATGGTGATATTCGAGTTTCCTTCGGTGGCAATATT
66 GAGTATTAAAGCTTGAATTGCATTTTCTTGATGGTGATATTCGAGTTTCCTTCGGTGGTGATATC
* * * *
15729572 CGAAGTCATTTGCATGTTCTCGGTGGTGATATTCAAGTATTAAAGCTTGAA-TTGCATTTTCTCG
131 CGAAGTCATTTGCATATTCTCGGTGGTGATATCCAAGT-TTAAAGCTTGAATTTACATTTTCTCA
* *
15729636 ATGATAATATTCGAGTTTCCTTCAGTAACAATATCCGAGGCCATTTGCATCT
195 ATGATAAGATTCGAGTTTCCTTCAGTAACAATATCCGAAGCCATTTGCATCT
* * * * * *
15729688 ACTCGATGATGATATCCAAGTTTAAAGCTTAAATTGGCACTTGTATTTTTTCGGTGGTGATATCC
1 ACTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGTATTTTTTCGGTGGTGATATCC
* *
15729753 AAGTATTAAAGCTTGAATTGCATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGGTGATATC
66 GAGTATTAAAGCTTGAATTGCATTTTCTTGATGGTGATATTCGAGTTTCCTTCGGTGGTGATATC
* *
15729818 CGAAATCATTTGCATTTTCTTCGGTGGTGATATCCAAGTGTTAAA
131 CGAAGTCATTTGCATATTC-TCGGTGGTGATATCCAAGT-TTAAA
15729863 AATCATTTAC
Statistics
Matches: 359, Mismatches: 58, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
245 56 0.16
246 267 0.74
247 36 0.10
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (246 bp):
ACTCGATGGTGATATCCGAGTTTAAAGTTTGAATTTGCATTTGTATTTTTTCGGTGGTGATATCC
GAGTATTAAAGCTTGAATTGCATTTTCTTGATGGTGATATTCGAGTTTCCTTCGGTGGTGATATC
CGAAGTCATTTGCATATTCTCGGTGGTGATATCCAAGTTTAAAGCTTGAATTTACATTTTCTCAA
TGATAAGATTCGAGTTTCCTTCAGTAACAATATCCGAAGCCATTTGCATCT
Found at i:15729650 original size:99 final size:99
Alignment explanation
Indices: 15729495--15729723 Score: 307
Period size: 99 Copynumber: 2.3 Consensus size: 99
15729485 TATTTTCTCA
* * * *
15729495 ATGGTGATATCCGAGTATTAAAGCTTGAATTGCATTTTCTTGATGGTGATATTCGAGTTTCCTTC
1 ATGGTGATATCCAAGTATTAAAGCTTGAATTGCATTTTCTCGATGATAATATTCGAGTTTCCTTC
* ** * * * *
15729560 GGTGGCAATATTCGAAGTCATTTGCATGTTCTCG
66 AGTAACAATATCCGAAGCCATTTGCATCTACTCG
* *
15729594 GTGGTGATATTCAAGTATTAAAGCTTGAATTGCATTTTCTCGATGATAATATTCGAGTTTCCTTC
1 ATGGTGATATCCAAGTATTAAAGCTTGAATTGCATTTTCTCGATGATAATATTCGAGTTTCCTTC
*
15729659 AGTAACAATATCCGAGGCCATTTGCATCTACTCG
66 AGTAACAATATCCGAAGCCATTTGCATCTACTCG
* *
15729693 ATGATGATATCCAAGT-TTAAAGCTTAAATTG
1 ATGGTGATATCCAAGTATTAAAGCTTGAATTG
15729724 GCACTTGTAT
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
98 14 0.12
99 98 0.88
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.38
Consensus pattern (99 bp):
ATGGTGATATCCAAGTATTAAAGCTTGAATTGCATTTTCTCGATGATAATATTCGAGTTTCCTTC
AGTAACAATATCCGAAGCCATTTGCATCTACTCG
Found at i:15729949 original size:76 final size:76
Alignment explanation
Indices: 15729798--15729952 Score: 188
Period size: 76 Copynumber: 2.0 Consensus size: 76
15729788 GATATTCGAG
* * *
15729798 TTTCCTTCGGTGGTGATATCCGAAATCATTTGCATTTTCTTCGGTGGTGATATCCAAGTGTTAAA
1 TTTCATTCGGTAGTGATATCCGAAATCATTTGCATTTTCTTCAGTGGTGATATCCAAGTGTTAAA
* *
15729863 AATCATTTACA
66 AATAAATTACA
* * *
15729874 TTTCATTCGGTAGTGATATCC-AAAGTTATTTGCATTTT-TTCAGTGGTGATATTCGAGTGTTAA
1 TTTCATTCGGTAGTGATATCCGAAA-TCATTTGCATTTTCTTCAGTGGTGATATCCAAGTGTTAA
**
15729937 AGTTGAAATTACA
65 AAAT-AAATTACA
15729950 TTT
1 TTT
15729953 TCTTGATGGT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
75 27 0.40
76 40 0.60
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.42
Consensus pattern (76 bp):
TTTCATTCGGTAGTGATATCCGAAATCATTTGCATTTTCTTCAGTGGTGATATCCAAGTGTTAAA
AATAAATTACA
Found at i:15730051 original size:99 final size:98
Alignment explanation
Indices: 15729886--15730196 Score: 322
Period size: 99 Copynumber: 3.1 Consensus size: 98
15729876 TCATTCGGTA
* * * * * *
15729886 GTGATATCCAAAGTTATTTGCATTTTTTCAGTGGTGATATTCGAGTGTTAAAG-TTGAAATTACA
1 GTGATATCCGAAGTCATTTGCATTTTCTCAGTGGTGATATCCAAGTGTTAAAGCTTG-AATTGCA
15729950 TTTTCTTGATGGTGATATTCGAGTTTTTTTCGGTG
65 TTTTCTTGATGGTGATATTCGAGTTTTTTT-GGTG
*
15729985 GTGATATCCGAAGTCATTTGCATCTTCTCAGTGGTGATATCCAAGTGTTAAAGCTTGAATTGCAT
1 GTGATATCCGAAGTCATTTGCATTTTCTCAGTGGTGATATCCAAGTGTTAAAGCTTGAATTGCAT
* * *
15730050 TTTCTCT-ATGGTAATATTTGAGTTTCTTTTAGTG
66 TTTCT-TGATGGTGATATTCGAGTTT-TTTTGGTG
* ** *
15730084 GTGATATCCGAGTGTTAAAAATCATTTGCATTTTCTTTGGTGGTGATATCCAAGCT-TTAGAGCT
1 GTGATATCC----G----AAGTCATTTGCATTTTC-TCAGTGGTGATATCCAAG-TGTTAAAGCT
* *
15730148 TTAATTGCATTTTCTCGATGGTGATATTCGAGTTTTCTTTGGTG
56 TGAATTGCATTTTCTTGATGGTGATATTCGAGTTTT-TTTGGTG
15730192 GTGAT
1 GTGAT
15730197 GTCTAATTGT
Statistics
Matches: 177, Mismatches: 20, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
99 87 0.49
100 8 0.05
103 1 0.01
107 16 0.09
108 64 0.36
109 1 0.01
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.44
Consensus pattern (98 bp):
GTGATATCCGAAGTCATTTGCATTTTCTCAGTGGTGATATCCAAGTGTTAAAGCTTGAATTGCAT
TTTCTTGATGGTGATATTCGAGTTTTTTTGGTG
Found at i:15730208 original size:108 final size:108
Alignment explanation
Indices: 15729998--15730232 Score: 305
Period size: 108 Copynumber: 2.2 Consensus size: 108
15729988 ATATCCGAAG
* ** *
15729998 TCATTTGCATCTTC-TCAGTGGTGATATCCAAGTGTTAAAGCTTGAATTGCATTTTCTCTATGGT
1 TCATTTGCATTTTCTTTGGTGGTGATATCCAAGTGTTAAAGCTTGAATTGCATTTTCTCGATGGT
* *
15730062 AATATTTGAGTTTCTTTTAGTGGTGATATCCGAGTGTTAAAAA
66 AATATTCGAGTTTCTTTTAGTGGTGATATCCAAGTGTTAAAAA
* *
15730105 TCATTTGCATTTTCTTTGGTGGTGATATCCAAGCT-TTAGAGCTTTAATTGCATTTTCTCGATGG
1 TCATTTGCATTTTCTTTGGTGGTGATATCCAAG-TGTTAAAGCTTGAATTGCATTTTCTCGATGG
* * * * *
15730169 TGATATTCGAGTTT-TCTTTGGTGGTGATGTCTAATTGTTAAAAA
65 TAATATTCGAGTTTCT-TTTAGTGGTGATATCCAAGTGTTAAAAA
*
15730213 TCATTTGCATTTTTTTTGGT
1 TCATTTGCATTTTCTTTGGT
15730233 AGCGATATTC
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
107 14 0.13
108 96 0.86
109 1 0.01
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (108 bp):
TCATTTGCATTTTCTTTGGTGGTGATATCCAAGTGTTAAAGCTTGAATTGCATTTTCTCGATGGT
AATATTCGAGTTTCTTTTAGTGGTGATATCCAAGTGTTAAAAA
Found at i:15730422 original size:50 final size:49
Alignment explanation
Indices: 15730367--15730583 Score: 222
Period size: 50 Copynumber: 4.4 Consensus size: 49
15730357 GCTTTTAATA
* *
15730367 TTTTAAAGTTGTTGAGCCTTTGCTTAGAGGAGCTTTTTTCAAAATAAGAT
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGC-CTTTTCAAAATAAGAT
* * *
15730417 TTTTAAAGTTATTGAGCCTCTGCTTAGAAGAGCCTTTTCAAGATGAA-AT
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTCAAAAT-AAGAT
* * * * * *
15730466 TTTTAAAGTTGTT-AACATCTACTTAGATGAACCTTTTCTAAAATGAGAAT
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTC-AAAATAAG-AT
* * * * *
15730516 TTTTAAAATTGTTGAGCCTTTGCTTAAAGGAGCCTTTTTCAAAATGAGAA
1 TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCC-TTTTCAAAATAAGAT
*
15730566 TTTTAAAGTTGTCGAGCC
1 TTTTAAAGTTGTTGAGCC
15730584 CTGAGTAGGC
Statistics
Matches: 137, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
48 21 0.15
49 27 0.20
50 63 0.46
51 21 0.15
52 5 0.04
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (49 bp):
TTTTAAAGTTGTTGAGCCTCTGCTTAGAGGAGCCTTTTCAAAATAAGAT
Found at i:15730969 original size:23 final size:24
Alignment explanation
Indices: 15730942--15730995 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
15730932 TAAAAAATAT
15730942 ACAAAAAAA-A-GAAAAATACAAAA
1 ACAAAAAAAGATGAAAAA-ACAAAA
*
15730965 ACAAAAAAAGGATGAAAAAATAAAA
1 ACAAAAAAA-GATGAAAAAACAAAA
15730990 ACAAAA
1 ACAAAA
15730996 GGAACAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 9 0.33
25 12 0.44
26 6 0.22
ACGTcount: A:0.80, C:0.07, G:0.07, T:0.06
Consensus pattern (24 bp):
ACAAAAAAAGATGAAAAAACAAAA
Found at i:15730973 original size:17 final size:16
Alignment explanation
Indices: 15730933--15730973 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
15730923 TTATTTATTT
*
15730933 AAAAAATATACAAAAA
1 AAAAAAAATACAAAAA
15730949 AAAGAAAAATACAAAAA
1 AAA-AAAAATACAAAAA
*
15730966 CAAAAAAA
1 AAAAAAAA
15730974 GGATGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.83, C:0.07, G:0.02, T:0.07
Consensus pattern (16 bp):
AAAAAAAATACAAAAA
Found at i:15731871 original size:24 final size:26
Alignment explanation
Indices: 15731839--15731887 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
15731829 CGGCCTAAAC
*
15731839 TGAATCAGATC-GACC-CCGAACCAT
1 TGAACCAGATCAGACCGCCGAACCAT
*
15731863 TGAACCAGATCAGACCGCTGAACCA
1 TGAACCAGATCAGACCGCCGAACCA
15731888 GCCAAACCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 4 0.19
26 7 0.33
ACGTcount: A:0.35, C:0.33, G:0.18, T:0.14
Consensus pattern (26 bp):
TGAACCAGATCAGACCGCCGAACCAT
Found at i:15731961 original size:20 final size:21
Alignment explanation
Indices: 15731933--15731973 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
15731923 GATTCAAGTG
*
15731933 AATTTTTTTTATT-TTTTAAA
1 AATTATTTTTATTATTTTAAA
*
15731953 AATTATTTTTGTTATTTTAAA
1 AATTATTTTTATTATTTTAAA
15731974 TTTTATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
AATTATTTTTATTATTTTAAA
Found at i:15732153 original size:9 final size:10
Alignment explanation
Indices: 15732121--15732154 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
15732111 TAAATCTTAT
15732121 AAAATAATACA
1 AAAATAATA-A
15732132 AAAATAATAA
1 AAAATAATAA
*
15732142 AAAATAAGAA
1 AAAATAATAA
15732152 AAA
1 AAA
15732155 GAAATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (10 bp):
AAAATAATAA
Found at i:15736528 original size:16 final size:18
Alignment explanation
Indices: 15736507--15736549 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
15736497 TATTTTTAAA
*
15736507 ATATAAATATAT-AAT-T
1 ATATAAATAGATAAATAT
*
15736523 ATATAATTAGATAAATAT
1 ATATAAATAGATAAATAT
15736541 ATATAAATA
1 ATATAAATA
15736550 ATTAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 10 0.45
17 3 0.14
18 9 0.41
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATATAAATAGATAAATAT
Found at i:15736560 original size:22 final size:24
Alignment explanation
Indices: 15736511--15736561 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
15736501 TTTAAAATAT
* * *
15736511 AAATATATAATTATATAATTAGAT
1 AAATATATAATTAAATAATTAAAA
15736535 AAATATAT-A-TAAATAATTAAAA
1 AAATATATAATTAAATAATTAAAA
15736557 AAATA
1 AAATA
15736562 ATTTTTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 15 0.62
23 1 0.04
24 8 0.33
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATATATAATTAAATAATTAAAA
Found at i:15741537 original size:17 final size:17
Alignment explanation
Indices: 15741463--15741538 Score: 62
Period size: 17 Copynumber: 4.5 Consensus size: 17
15741453 ATTTCCAAAT
* *
15741463 TTGTGAACCTTTGACAC
1 TTGTGAATCTTTGAAAC
* *
15741480 TTGCGAATCTTTAAAAC
1 TTGTGAATCTTTGAAAC
** *
15741497 TTACGAATCTTTGAAAA
1 TTGTGAATCTTTGAAAC
* * *
15741514 TTATGAATCTTTTAAAT
1 TTGTGAATCTTTGAAAC
15741531 TTGTGAAT
1 TTGTGAAT
15741539 ATTTAACCTT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 48 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (17 bp):
TTGTGAATCTTTGAAAC
Found at i:15741625 original size:18 final size:18
Alignment explanation
Indices: 15741546--15741625 Score: 72
Period size: 18 Copynumber: 4.4 Consensus size: 18
15741536 AATATTTAAC
*
15741546 CTTGCAAAACTTTGAACA
1 CTTGCAAATCTTTGAACA
* ** *
15741564 TTTGCAAATCTTTTTACT
1 CTTGCAAATCTTTGAACA
**
15741582 CTCACAAATCTTTGAACA
1 CTTGCAAATCTTTGAACA
*
15741600 CTTACAAATCTTTGAACTA
1 CTTGCAAATCTTTGAAC-A
15741619 -TTGCAAA
1 CTTGCAAA
15741626 CCTCTAAACT
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
18 47 0.98
19 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.36
Consensus pattern (18 bp):
CTTGCAAATCTTTGAACA
Found at i:15741736 original size:17 final size:17
Alignment explanation
Indices: 15741694--15741736 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
15741684 TAAACTTTTA
*
15741694 TGAACCTTTGAAACTTG
1 TGAACCTTTCAAACTTG
* *
15741711 CGAATCTTTCAAACTTG
1 TGAACCTTTCAAACTTG
15741728 TGAACCTTT
1 TGAACCTTT
15741737 AACTTAACGA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (17 bp):
TGAACCTTTCAAACTTG
Found at i:15741967 original size:41 final size:41
Alignment explanation
Indices: 15741904--15742022 Score: 114
Period size: 41 Copynumber: 2.9 Consensus size: 41
15741894 AAGCCTTTAA
* * ** *
15741904 ACCTTTAGTTGTGAAGT-TTTGACTCTAATGTGAATGTAGAG
1 ACCTATAGTTGTGAA-TCATTGACTCTAATGTGAATCCAAAG
* * **
15741945 ACCTCTAGTTGTGAATCCTTGACTCTGGTGTGAATCCAAAG
1 ACCTATAGTTGTGAATCATTGACTCTAATGTGAATCCAAAG
** *
15741986 TTCTATAATTGTGAATCATTGACTCTAATGTGAATCC
1 ACCTATAGTTGTGAATCATTGACTCTAATGTGAATCC
15742023 TGAGTCTTTT
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
40 1 0.02
41 62 0.98
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (41 bp):
ACCTATAGTTGTGAATCATTGACTCTAATGTGAATCCAAAG
Found at i:15742036 original size:41 final size:41
Alignment explanation
Indices: 15741922--15742036 Score: 99
Period size: 41 Copynumber: 2.8 Consensus size: 41
15741912 TTGTGAAGTT
* * * * * *
15741922 TTGACTCTAATGTGAAT-GTAGAGACCTCTAGTTGTGAATCC
1 TTGACTCTAATGTGAATCCT-GAGTCTTATAATTGTGAATCA
** **
15741963 TTGACTCTGGTGTGAATCCAAAGT-TCTATAATTGTGAATCA
1 TTGACTCTAATGTGAATCCTGAGTCT-TATAATTGTGAATCA
*
15742004 TTGACTCTAATGTGAATCCTGAGTCTTTTAATT
1 TTGACTCTAATGTGAATCCTGAGTCTTATAATT
15742037 TACTTTTATG
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
41 55 0.98
42 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (41 bp):
TTGACTCTAATGTGAATCCTGAGTCTTATAATTGTGAATCA
Found at i:15742419 original size:15 final size:15
Alignment explanation
Indices: 15742375--15742453 Score: 60
Period size: 14 Copynumber: 5.4 Consensus size: 15
15742365 AATGAGTTTT
15742375 TCAAAAATTA-AAAAA
1 TCAAAAA-TACAAAAA
*
15742390 TCTAAAAAGAC-AAAA
1 TC-AAAAATACAAAAA
15742405 TCAAAAATACAAAAAA
1 TCAAAAATAC-AAAAA
*
15742421 T-AATAATACAAAAA
1 TCAAAAATACAAAAA
**
15742435 T-ATTAATA-AAAAA
1 TCAAAAATACAAAAA
15742448 TCAAAA
1 TCAAAA
15742454 TCATAAAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
13 6 0.11
14 21 0.40
15 16 0.30
16 10 0.19
ACGTcount: A:0.71, C:0.09, G:0.01, T:0.19
Consensus pattern (15 bp):
TCAAAAATACAAAAA
Found at i:15742489 original size:16 final size:17
Alignment explanation
Indices: 15742458--15742490 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15742448 TCAAAATCAT
*
15742458 AAAAAAAACAATAAACC
1 AAAAAAAACAAAAAACC
15742475 AAAAAAAA-AAAAAACC
1 AAAAAAAACAAAAAACC
15742491 TCTGAGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.03
Consensus pattern (17 bp):
AAAAAAAACAAAAAACC
Found at i:15742928 original size:23 final size:23
Alignment explanation
Indices: 15742894--15742947 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
15742884 ATTTTCAAAC
*
15742894 TAAAAAA-AAAAAGAGAAAAATT
1 TAAAAAATAAAAAAAGAAAAATT
* *
15742916 TAAAAAATCAAAAAATAAAAATT
1 TAAAAAATAAAAAAAGAAAAATT
15742939 TAATAAAAT
1 TAA-AAAAT
15742948 TTTGAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 7 0.26
23 15 0.56
24 5 0.19
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAAAAATAAAAAAAGAAAAATT
Found at i:15744190 original size:12 final size:12
Alignment explanation
Indices: 15744154--15744192 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15744144 ACAAAATCAT
15744154 AATCATACAAAA
1 AATCATACAAAA
* *
15744166 ATATTATAAAAAA
1 A-ATCATACAAAA
15744179 AATCATACAAAA
1 AATCATACAAAA
15744191 AA
1 AA
15744193 AATCATTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (12 bp):
AATCATACAAAA
Found at i:15744190 original size:13 final size:13
Alignment explanation
Indices: 15744154--15744198 Score: 56
Period size: 14 Copynumber: 3.5 Consensus size: 13
15744144 ACAAAATCAT
15744154 AATCATACAAAAA
1 AATCATACAAAAA
* *
15744167 TATTATA-AAAAA
1 AATCATACAAAAA
15744179 AATCATACAAAAAA
1 AATCATAC-AAAAA
15744193 AATCAT
1 AATCAT
15744199 TAAAACATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 10 0.38
13 5 0.19
14 11 0.42
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCATACAAAAA
Found at i:15744203 original size:13 final size:14
Alignment explanation
Indices: 15744170--15744203 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15744160 ACAAAAATAT
15744170 TATAAAAAAAATCA
1 TATAAAAAAAATCA
*
15744184 TACAAAAAAAATCA
1 TATAAAAAAAATCA
15744198 T-TAAAA
1 TATAAAA
15744204 CATCATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (14 bp):
TATAAAAAAAATCA
Found at i:15744267 original size:17 final size:17
Alignment explanation
Indices: 15744242--15744277 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15744232 TATACAAAAC
*
15744242 ATATTATAAATCATGCA
1 ATATCATAAATCATGCA
*
15744259 ATATCATAAATCATTCA
1 ATATCATAAATCATGCA
15744276 AT
1 AT
15744278 GCAAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (17 bp):
ATATCATAAATCATGCA
Found at i:15744310 original size:23 final size:22
Alignment explanation
Indices: 15744280--15744360 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 22
15744270 CATTCAATGC
15744280 AAAAATATCATAACAAATCATGT
1 AAAAATATCATAA-AAATCATGT
15744303 AAAAATATCCTAATAAAAATCATGT
1 AAAAATAT-C--ATAAAAATCATGT
*
15744328 AAAAATA--ATAAAAATCATGC
1 AAAAATATCATAAAAATCATGT
* *
15744348 AATAATATAATAA
1 AAAAATATCATAA
15744361 TGAAAATTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
20 18 0.35
22 4 0.08
23 8 0.16
24 1 0.02
25 16 0.31
26 4 0.08
ACGTcount: A:0.60, C:0.10, G:0.04, T:0.26
Consensus pattern (22 bp):
AAAAATATCATAAAAATCATGT
Found at i:15744338 original size:20 final size:22
Alignment explanation
Indices: 15744215--15744360 Score: 77
Period size: 21 Copynumber: 6.6 Consensus size: 22
15744205 ATCATGTAAT
* * *
15744215 AATATTATAATAAAAATTATAC
1 AATAATATAATAAAAATCATGC
* * *
15744237 AA-AACATATTATAAATCATGC
1 AATAATATAATAAAAATCATGC
** *
15744258 AAT-ATCATAA-ATCATTCAATGC
1 AATAAT-ATAATAAAAATC-ATGC
* * *
15744280 AAAAATATCATAACAAATCATGT
1 AATAATATAATAA-AAATCATGC
* *
15744303 AAAAATATCCTAATAAAAATCATGT
1 AATAATA---TAATAAAAATCATGC
15744328 AA-AA-ATAATAAAAATCATGC
1 AATAATATAATAAAAATCATGC
15744348 AATAATATAATAA
1 AATAATATAATAA
15744361 TGAAAATTAA
Statistics
Matches: 95, Mismatches: 18, Indels: 22
0.70 0.13 0.16
Matches are distributed among these distances:
20 16 0.17
21 23 0.24
22 21 0.22
23 14 0.15
24 5 0.05
25 11 0.12
26 5 0.05
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (22 bp):
AATAATATAATAAAAATCATGC
Found at i:15744539 original size:16 final size:16
Alignment explanation
Indices: 15744499--15744531 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15744489 ATACCAAAAT
*
15744499 ATAATAAAATTATAAA
1 ATAAGAAAATTATAAA
15744515 ATAAGAAAATTATAAA
1 ATAAGAAAATTATAAA
15744531 A
1 A
15744532 ATTAAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
ATAAGAAAATTATAAA
Found at i:15745188 original size:133 final size:133
Alignment explanation
Indices: 15745039--15745286 Score: 299
Period size: 133 Copynumber: 1.9 Consensus size: 133
15745029 AGTTTTTATC
* *
15745039 GTTACAAATATGATAAAAGTTTTCGTAACAA-CAAATT-TTGTTGTTATTTAAAATACTAAAAAA
1 GTTACAAATATGATAAAAGTTTTCGTAACAATC---TTCTTGTCGTTATATAAAATACTAAAAAA
** * *
15745102 TAACTTAAGCAATGACATTGAAAAAT-AGTTGCAAATTAAACAAGT-TTTACACAACAACTTTGA
63 TAACTTAAGCAACAACATTGAAAAATCA-TTGCAAATAAAAAAAGTATTTACACAACAACTTTGA
15745165 TTTTGTT
127 TTTTGTT
* * * *
15745172 GTTACAAATAAT-ATAAAATTTTTTGTAACAATCTTGCTTGTCGTTGTATAAAATATTAAAAAAT
1 GTTACAAAT-ATGATAAAAGTTTTCGTAACAATCTT-CTTGTCGTTATATAAAATACTAAAAAAT
* *
15745236 AATTTAAGCAACAACTTTGAAAAATCATTGCAAATAAAAAAAGTATTTACA
64 AACTTAAGCAACAACATTGAAAAATCATTGCAAATAAAAAAAGTATTTACA
15745287 ACAAATTTTT
Statistics
Matches: 97, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
131 2 0.02
133 85 0.88
134 10 0.10
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (133 bp):
GTTACAAATATGATAAAAGTTTTCGTAACAATCTTCTTGTCGTTATATAAAATACTAAAAAATAA
CTTAAGCAACAACATTGAAAAATCATTGCAAATAAAAAAAGTATTTACACAACAACTTTGATTTT
GTT
Found at i:15745323 original size:133 final size:133
Alignment explanation
Indices: 15745095--15745564 Score: 428
Period size: 132 Copynumber: 3.6 Consensus size: 133
15745085 TTTAAAATAC
* * * *
15745095 TAAAAAATAACTTAAGCAATGACATTGAAAAAT-AGTTGCAAATTAAACAAGT-TTTACACAACA
1 TAAAAAATAACTTAAGCAACGACTTTGAAAAATCA-TTGCAAATAAAAAAAGTATTT-CACAACA
* * * **
15745158 ACTTTGATT-TTGTTGTTACAAA-TAATATAAAATTTTTTGTAACAA-TCTTGCTTGTCGTTGTA
64 AATTT-TTTGTTGTCGTTACAAATTAATA-AAAATTTTTTGTAACAACT-TTATTTGTCGTTGTA
*
15745220 TAAAATAT
126 TAAAAGAT
* *
15745228 TAAAAAATAATTTAAGCAACAACTTTGAAAAATCATTGCAAATAAAAAAAGTATTT-ACAACAAA
1 TAAAAAATAACTTAAGCAACGACTTTGAAAAATCATTGCAAATAAAAAAAGTATTTCACAACAAA
* * *
15745292 TTTTTTGTTGTCATTACAAATGTAATAAAAA-TTTTTGTAACTACTTTATTTGTCATT-TCATAA
66 TTTTTTGTTGTCGTTACAAAT-TAATAAAAATTTTTTGTAACAACTTTATTTGTCGTTGT-ATAA
*
15745355 AGGAT
129 AAGAT
* * * ** *
15745360 TTAAAAATAACTTAAGCAATGACTTTGAAAAATCTTTGCAAA-AAAAAATTTA-TTCACAAGAAT
1 TAAAAAATAACTTAAGCAACGACTTTGAAAAATCATTGCAAATAAAAAAAGTATTTCACAACAA-
* ** * * * * *
15745423 TTTTTTTTGTTGTCGTTAC-AATATAAT-AAAATTTTTCATAACGACTTTTTTTATTGTTGGATA
65 -ATTTTTTGTTGTCGTTACAAAT-TAATAAAAATTTTTTGTAACAACTTTATTTGTCGTTGTATA
15745486 AAAGAT
128 AAAGAT
* * * * * *
15745492 TTAAAAATAACTTAAGTAACGATTTTGAAAAATTATTACAAATAAAATAAG-ATTTCACAAC-AA
1 TAAAAAATAACTTAAGCAACGACTTTGAAAAATCATTGCAAATAAAAAAAGTATTTCACAACAAA
15745555 TTTTTTGTTG
66 TTTTTTGTTG
15745565 CAAGTAGGAA
Statistics
Matches: 276, Mismatches: 47, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
130 12 0.04
131 21 0.08
132 157 0.57
133 77 0.28
134 9 0.03
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (133 bp):
TAAAAAATAACTTAAGCAACGACTTTGAAAAATCATTGCAAATAAAAAAAGTATTTCACAACAAA
TTTTTTGTTGTCGTTACAAATTAATAAAAATTTTTTGTAACAACTTTATTTGTCGTTGTATAAAA
GAT
Found at i:15746172 original size:87 final size:89
Alignment explanation
Indices: 15746003--15746176 Score: 316
Period size: 87 Copynumber: 2.0 Consensus size: 89
15745993 CAATTGAGCC
*
15746003 TTCAATTGGAAGTTAATTTAATAAGAATTTTATTGATAAAAATAAATATTTAATAATTTAATTAA
1 TTCAATTGGAAGTTAATTTAATAAGAATTTAATTGATAAAAATAAATATTTAATAATTTAATTAA
15746068 TTATAACAAAATAATAAAGATTTG
66 TTATAACAAAATAATAAAGATTTG
*
15746092 TTCAATTGGAAGTTGATTTAATAAGAATTTAATTGAT-AAAA-AAATATTTAATAATTTAATTAA
1 TTCAATTGGAAGTTAATTTAATAAGAATTTAATTGATAAAAATAAATATTTAATAATTTAATTAA
15746155 TTATAACAAAATAATAAAGATT
66 TTATAACAAAATAATAAAGATT
15746177 CGTTGATTAT
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
87 44 0.53
88 4 0.05
89 35 0.42
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (89 bp):
TTCAATTGGAAGTTAATTTAATAAGAATTTAATTGATAAAAATAAATATTTAATAATTTAATTAA
TTATAACAAAATAATAAAGATTTG
Found at i:15747094 original size:12 final size:12
Alignment explanation
Indices: 15747073--15747106 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15747063 AGTACAAGTT
* *
15747073 TATATATATATA
1 TATATTTATAAA
15747085 TATATTTATAAA
1 TATATTTATAAA
15747097 TATATTTATA
1 TATATTTATA
15747107 CTAAATCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATATTTATAAA
Found at i:15747836 original size:77 final size:76
Alignment explanation
Indices: 15747709--15747861 Score: 200
Period size: 77 Copynumber: 2.0 Consensus size: 76
15747699 ATTTGTTTGA
* * *
15747709 TAGACATTAATTGGATTAACCTTAAGAATACGATGAATCTCAAGTCTCAACTATTCATGCAAGCA
1 TAGACATTAATTGAATTAACCTTAAGAATAC-ATGAATCTCAACTCTCAACTATTCATACAAGCA
*
15747774 ATCTCAGTTACC
65 ATCTCAATTACC
** * *
15747786 TAGACATTAATTGAATTAACCTTTATTACATA-ATGAATCTCATCTCTCAACTATTCATACATGC
1 TAGACATTAATTGAATTAACC-TTAAGA-ATACATGAATCTCAACTCTCAACTATTCATACAAGC
15747850 AATCTCAATTAC
64 AATCTCAATTAC
15747862 GATAATATCA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 59 0.89
78 4 0.06
79 3 0.05
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (76 bp):
TAGACATTAATTGAATTAACCTTAAGAATACATGAATCTCAACTCTCAACTATTCATACAAGCAA
TCTCAATTACC
Found at i:15752001 original size:3 final size:3
Alignment explanation
Indices: 15751988--15752034 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
15751978 TAAAAGAATG
* * *
15751988 AAT ATT AAT AAT AAT -AT AA- AAT AAT AAC AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15752034 A
1 A
15752035 TCATACAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 4 0.11
3 32 0.89
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:15752022 original size:12 final size:12
Alignment explanation
Indices: 15751994--15752034 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
15751984 AATGAATATT
*
15751994 AATAATAAT-AT
1 AATAATAATAAC
15752005 AA-AATAATAAC
1 AATAATAATAAC
15752016 AATAATAATAAC
1 AATAATAATAAC
15752028 AATAATA
1 AATAATA
15752035 TCATACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 6 0.22
11 5 0.19
12 16 0.59
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:15753290 original size:36 final size:35
Alignment explanation
Indices: 15753231--15753321 Score: 119
Period size: 36 Copynumber: 2.5 Consensus size: 35
15753221 CTTTGACTAG
*
15753231 AGGCAATGAAACTTTGAAAAAAACTCTTCTAAGCAA
1 AGGCAATGAAACTTT-AAAAAAACTCTTCTAACCAA
* * * *
15753267 AGGCTATGACACTTTAAAGAAAACTCTTCTGACCAT
1 AGGCAATGAAACTTTAAA-AAAACTCTTCTAACCAA
15753303 AGGCAATGAAACTTTAAAA
1 AGGCAATGAAACTTTAAAA
15753322 GGTTGCTTTG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
35 4 0.09
36 43 0.91
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (35 bp):
AGGCAATGAAACTTTAAAAAAACTCTTCTAACCAA
Found at i:15753389 original size:34 final size:34
Alignment explanation
Indices: 15753303--15753389 Score: 115
Period size: 34 Copynumber: 2.6 Consensus size: 34
15753293 TTCTGACCAT
*
15753303 AGGCAATGAAACTTTAAAAGGTTGCTTTGATGAG
1 AGGCAATGAAACTTTAAATGGTTGCTTTGATGAG
* *
15753337 TGGTAATGAAACTTTAAATGGCTT-CTTTGACT-AG
1 AGGCAATGAAACTTTAAATGG-TTGCTTTGA-TGAG
15753371 AGGCAATGAAACTTTAAAT
1 AGGCAATGAAACTTTAAAT
15753390 TAAAAATCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
34 43 0.93
35 3 0.07
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (34 bp):
AGGCAATGAAACTTTAAATGGTTGCTTTGATGAG
Found at i:15759699 original size:51 final size:49
Alignment explanation
Indices: 15759591--15759718 Score: 166
Period size: 51 Copynumber: 2.6 Consensus size: 49
15759581 TATCTAATTA
* * * *
15759591 TTTCACCATTTGGGCCTATTTAGAAATTGTTTTATTTAATTTCTAAAAT
1 TTTCACCATTTAGGTCAATTTAGAAATTCTTTTATTTAATTTCTAAAAT
* *
15759640 TTTCACCATTTAGGTCAATTTAGAAATATCTTCTTTTTTAATTTCTAAATT
1 TTTCACCATTTAGGTCAATTTAGAAAT-TCTT-TTATTTAATTTCTAAAAT
* *
15759691 TTTTACCATTTAGGTCAATTTAAAAATT
1 TTTCACCATTTAGGTCAATTTAGAAATT
15759719 TTTCTCTTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
49 24 0.35
50 4 0.06
51 41 0.59
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.49
Consensus pattern (49 bp):
TTTCACCATTTAGGTCAATTTAGAAATTCTTTTATTTAATTTCTAAAAT
Found at i:15760080 original size:25 final size:24
Alignment explanation
Indices: 15760034--15760081 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
15760024 TCTCACGTAG
*
15760034 GAAATTTATAAAAATTTGTCATTC
1 GAAATTTATAAAAATTTATCATTC
*
15760058 GAAATTTCTAAAAATTTCATCATT
1 GAAATTTATAAAAATTT-ATCATT
15760082 GGATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (24 bp):
GAAATTTATAAAAATTTATCATTC
Found at i:15760125 original size:12 final size:12
Alignment explanation
Indices: 15760110--15760143 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
15760100 TTAAAAAATA
15760110 TTTTATTTTATT
1 TTTTATTTTATT
15760122 TTTTAATTTTATT
1 TTTT-ATTTTATT
*
15760135 TATTATTTT
1 TTTTATTTT
15760144 TAAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:15760984 original size:20 final size:19
Alignment explanation
Indices: 15760959--15761006 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 19
15760949 CCTATTTTTC
15760959 ATTTTTTTCCATTTTTTGTT
1 ATTTTTTT-CATTTTTTGTT
*
15760979 ATTTTTTGTTATTTTTTGTT
1 ATTTTTT-TCATTTTTTGTT
15760999 ATTTTTTT
1 ATTTTTTT
15761007 ATTAACAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.10, C:0.04, G:0.06, T:0.79
Consensus pattern (19 bp):
ATTTTTTTCATTTTTTGTT
Found at i:15761458 original size:43 final size:43
Alignment explanation
Indices: 15761184--15761578 Score: 271
Period size: 44 Copynumber: 9.1 Consensus size: 43
15761174 AACATAAAAA
* * * *
15761184 CTCCTCTAAACAGAGGCTTC-ACGATTTTTGAGAAATAAATAAAA
1 CTCCTCTAAACAGAGG-TTCAATGA-CTTTGAAAAATAAATAAAG
* * * * * * * *
15761228 TTTCTCTAACCAGAAGCTCAAAGTCTTT-AAAAA-AAATAAGG
1 CTCCTCTAAACAGAGGTTCAATGACTTTGAAAAATAAATAAAG
* * ** * * *
15761269 CTCTTTTAAGTAGAAGCTT-AATGACTTTAGAAAAGTAAATAAGG
1 CTCCTCTAAACAG-AGGTTCAATGACTTT-GAAAAATAAATAAAG
* * * *
15761313 CTCATCTAAATAGAGGATT-AATGATTTTAGAAAAGTAAATAAAG
1 CTCCTCTAAACAGAGG-TTCAATGACTTT-GAAAAATAAATAAAG
* ** *
15761357 CTTCTCTAAACAGAGGCACAATAACTTTAGAAAAATAAATAAAG
1 CTCCTCTAAACAGAGGTTCAATGACTTT-GAAAAATAAATAAAG
* *
15761401 CTTCTTTAAACAGAGGTTCAATGACTTTGAAAAATAAATAAAG
1 CTCCTCTAAACAGAGGTTCAATGACTTTGAAAAATAAATAAAG
* * *
15761444 CTCCTCTAAGCAGAGGTTCAATGATTTTGAAAAATAAATAAGG
1 CTCCTCTAAACAGAGGTTCAATGACTTTGAAAAATAAATAAAG
** * * *
15761487 CTCCTCTAATTAGATGCTT-AATGACTTGGAAAAAATAAATAAGG
1 CTCCTCTAAACAGA-GGTTCAATGACTTTG-AAAAATAAATAAAG
* ** ** * *
15761531 CTCATCTAAGTAGAGACTCAACGACATTGAAAAATAAATAAAG
1 CTCCTCTAAACAGAGGTTCAATGACTTTGAAAAATAAATAAAG
15761574 CTCCT
1 CTCCT
15761579 TGACAATCTT
Statistics
Matches: 281, Mismatches: 60, Indels: 21
0.78 0.17 0.06
Matches are distributed among these distances:
41 20 0.07
42 6 0.02
43 103 0.37
44 152 0.54
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.28
Consensus pattern (43 bp):
CTCCTCTAAACAGAGGTTCAATGACTTTGAAAAATAAATAAAG
Found at i:15761459 original size:87 final size:86
Alignment explanation
Indices: 15761252--15761575 Score: 298
Period size: 87 Copynumber: 3.8 Consensus size: 86
15761242 AGCTCAAAGT
* * * * * * * *
15761252 CTTT-AAAAA-AAATAAGGCTCTTTTAAGTAGAAGCTTAATGACTTTAGAAAAGTAAATAAGGC-
1 CTTTGAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTAGAAAAATAAATAAAGCT
15761314 TCATCTAAATAGAGGATTAATGA
66 TC-TCTAAATAGAGG-TTAATGA
* * * * * *
15761337 TTTTAGAAAAGTAAATAAAGCTTCTCTAAACAGAGGCACAATAACTTTAGAAAAATAAATAAAGC
1 CTTT-GAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTAGAAAAATAAATAAAGC
* *
15761402 TTCTTTAAACAGAGGTTCAATGA
65 TTCTCTAAATAGAGGTT-AATGA
* * *
15761425 CTTTGAAAAATAAATAAAGCTCCTCTAAGCAGAGGTTCAATGA-TTTTGAAAAATAAATAAGGCT
1 CTTTGAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTAGAAAAATAAATAAAGCT
* * *
15761489 CCTCTAATTAGATGCTTAATGA
66 TCTCTAAATAGA-GGTTAATGA
* * * * * * *
15761511 CTTGGAAAAAATAAATAAGGCTCATCTAAGTAGAGACTCAACGACATT-GAAAAATAAATAAAGC
1 CTTTG-AAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTAGAAAAATAAATAAAGC
15761575 T
65 T
15761576 CCTTGACAAT
Statistics
Matches: 192, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
85 3 0.02
86 36 0.19
87 90 0.47
88 61 0.32
89 2 0.01
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (86 bp):
CTTTGAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTAGAAAAATAAATAAAGCT
TCTCTAAATAGAGGTTAATGA
Found at i:15762878 original size:7 final size:7
Alignment explanation
Indices: 15762862--15762969 Score: 62
Period size: 7 Copynumber: 15.0 Consensus size: 7
15762852 TTTTCTCTCA
15762862 TTTTATTT
1 TTTTA-TT
15762870 TTTTATT
1 TTTTATT
15762877 TTTTCATT
1 TTTT-ATT
*
15762885 TTTCATT
1 TTTTATT
*
15762892 TTTCTCTT
1 TTT-TATT
15762900 TCTTT-TT
1 T-TTTATT
15762907 TTTTAATT
1 TTTT-ATT
15762915 TTTT-TT
1 TTTTATT
*
15762921 TAATT-TT
1 T-TTTATT
*
15762928 TTTAATTT
1 TTTTA-TT
*
15762936 TTTTAAT
1 TTTTATT
15762943 TTTT-TT
1 TTTTATT
*
15762949 TTTAATT
1 TTTTATT
*
15762956 TTTAATT
1 TTTTATT
15762963 TTTTATT
1 TTTTATT
15762970 GATATTTCCC
Statistics
Matches: 80, Mismatches: 11, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
6 11 0.14
7 40 0.50
8 27 0.34
9 2 0.03
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTATT
Found at i:15762916 original size:11 final size:11
Alignment explanation
Indices: 15762902--15762958 Score: 77
Period size: 9 Copynumber: 5.5 Consensus size: 11
15762892 TTTCTCTTTC
15762902 TTTTTTTTTAA
1 TTTTTTTTTAA
15762913 TTTTTTTTTAA
1 TTTTTTTTTAA
15762924 --TTTTTTTAA
1 TTTTTTTTTAA
15762933 --TTTTTTTAA
1 TTTTTTTTTAA
15762942 TTTTTTTTTTAA
1 -TTTTTTTTTAA
15762954 TTTTT
1 TTTTT
15762959 AATTTTTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
9 18 0.42
11 16 0.37
12 9 0.21
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTTTTTAA
Found at i:15762918 original size:9 final size:9
Alignment explanation
Indices: 15762904--15762966 Score: 74
Period size: 9 Copynumber: 6.7 Consensus size: 9
15762894 TCTCTTTCTT
15762904 TTTTTTTAA
1 TTTTTTTAA
15762913 TTTTTTTTTAA
1 --TTTTTTTAA
15762924 TTTTTTTAA
1 TTTTTTTAA
15762933 TTTTTTTAA
1 TTTTTTTAA
*
15762942 TTTTTTT-T
1 TTTTTTTAA
15762950 TTAATTTTTAA
1 TT--TTTTTAA
15762961 TTTTTT
1 TTTTTT
15762967 ATTGATATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
8 2 0.04
9 29 0.62
10 5 0.11
11 11 0.23
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:15762936 original size:29 final size:28
Alignment explanation
Indices: 15762904--15762966 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
15762894 TCTCTTTCTT
15762904 TTTTTTTAA-TTTTTTTTTAATTTTTTTAA
1 TTTTTTTAATTTTTTTTTTAA--TTTTTAA
15762933 TTTTTTTAATTTTTTTTTTAATTTTTAA
1 TTTTTTTAATTTTTTTTTTAATTTTTAA
15762961 TTTTTT
1 TTTTTT
15762967 ATTGATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 13 0.39
29 9 0.27
30 11 0.33
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTTTTAATTTTTTTTTTAATTTTTAA
Found at i:15765621 original size:776 final size:776
Alignment explanation
Indices: 15764127--15766456 Score: 3910
Period size: 776 Copynumber: 3.0 Consensus size: 776
15764117 TTGTTATCCG
* *
15764127 TTTGTGTCAAAGTTTATCATTTCATCCTTAATCAATAGTTGCACTTTATGCTTTAGATTAGTGCA
1 TTTGTGTCAAAGTTTATCATTCCATCCTTAATCAATCGTTGCACTTTATGCTTTAGATTAGTGCA
*
15764192 ATTTTTAGTGGAATAACCAGCAATTCTATAGTGGTAGTCATAATGAGCTGTAAGATTATACCACT
66 ATTTTTAGTGGAATAACCAGCAATTCTATAGTGGTAGTCATAATGAGCTATAAGATTATACCACT
* *
15764257 T-AGGGTAAAGTGGCTTGAGTGGCTCTAATAGGCTAGGAGCAATTAGATGATTGTTATAGAGCTC
131 TGA-GGTAAAGTGGCTTGAGTGGCTCCAATAGGCTAAGAGCAATTAGATGATTGTTATAGAGCTC
*
15764321 TCGATATAACTTTGTATATGTCATAGGGATTGGGTAGAATGTGGGTTTTTCGTGAGTAGTTCATT
195 TCGATATAACTTTGTATATGTCATAGGGATTGGGTAGAATGTGGGTTTTTCATGAGTAGTTCATT
* *
15764386 GCTCTTGTGAACCACCCATCAGGCTAGCAGGATAGGTCTAAGGTCTTGAGGGAGGTTGAGCATTG
260 GCTCTTGTGAACCACCCATCAGGCTAGCAGGATAGGTTTGAGGTCTTGAGGGAGGTTGAGCATTG
* * * *
15764451 GGACTGTATATGACAATTTGAGGTCTGAAAAGAGATTGATAGGTCAGAAGGTAAAATGGATGTGG
325 GGACTGTATATGACAATTTAAGGTCTGAAAAGGGATTGATAGGTCAGAGGGTAAGATGGATGTGG
*
15764516 GGTTGGTTGGTACTGATAAAGGGAAGCATTATTCATGGTAGGATAATATGGAGAGTAACCTTATG
390 GGTTGGTTGGTACTGATAAAGGGAAGCATTATTCATGGTAGGATAATATAGAGAGTAACCTTATG
* * * *
15764581 GTGGGTAGGGTTGATAACCCATGAACTGTTGTCTATCAAAGCTCACAGCATAAGCTTCAGTCTTC
455 GTGGGTAGGGTTGATAACCCCTGAACTGTTGTCTATCAAAGCTCATAGCATAAGCTTTAGTCTCC
*
15764646 TTTTTCTTTAGGGCTCTCTTGGTGGAAACTTCTTATTCTTCCAACTTGCCATTCTTAATGGCATT
520 TTTTTCTTTAGGGCTCTCTTGGTGGAAACTTCTCATTCTTCCAACTTGCCATTCTTAATGGCATT
*
15764711 CTCAATGATTTCGCTCGAGATCACCAAGTCGATGAAATTTTTTGTTGCATTCCCTATCATCTTTT
585 CTCAATGATTTCACTCGAGATCACCAAGTCGATGAAATTTTTTGTTGCATTCCCTATCATCTTTT
*
15764776 CATAATAGGGAGATTTTAAAGTGCTGACAAACAATATTGTGGTTTTTTTTTCAATTAGAAGAGGT
650 CATAATAGGGAGATTTTAAAGTGCTGACAAACAACATTGTGGTTTTTTTTTCAATTAGAAGAGGT
* *
15764841 TGCACTTGGAAAGCTATATCCTTCCATCTCTAAGCATGTTCCTTAAATGATTCATTTGCCTT
715 TGCACTTGAAAAGCTATATCCTTCCATCTCTAAGCATGTTCCTTAAATGACTCATTTGCCTT
*
15764903 TTTGTGTCAAAGTTTATCATTCCATCCTTAATCAATCGTTGCACTTTATGCTTTAGATTAGTGTA
1 TTTGTGTCAAAGTTTATCATTCCATCCTTAATCAATCGTTGCACTTTATGCTTTAGATTAGTGCA
* *
15764968 ATTTTTAGTGGAATAACCAGCAATTCTATAGTGGTAGTCATAATGAGCTATAGGATTGTACCACT
66 ATTTTTAGTGGAATAACCAGCAATTCTATAGTGGTAGTCATAATGAGCTATAAGATTATACCACT
* * *
15765033 TGAGGTAAAATGGCTTGAGTGGCTCCAATAGGCTACGAGCAATTAGATGATTATTATAGAGCTCT
131 TGAGGTAAAGTGGCTTGAGTGGCTCCAATAGGCTAAGAGCAATTAGATGATTGTTATAGAGCTCT
* * *
15765098 CGATATAACTTTGTATATGCCATAGGGATTGGGTAGAATATGGGTTTTTCATGAGTAGTTCTTTG
196 CGATATAACTTTGTATATGTCATAGGGATTGGGTAGAATGTGGGTTTTTCATGAGTAGTTCATTG
*
15765163 CTCTTGTGAACCACCCATCAGGCTAGAAGGATAGGTTTGAGGTCTTGAGGGAGGTTGAGCATTGG
261 CTCTTGTGAACCACCCATCAGGCTAGCAGGATAGGTTTGAGGTCTTGAGGGAGGTTGAGCATTGG
* * * *
15765228 GACTGTATATGACAATTTAAGGTATGAAAAGGGATTGATAGATCAGAGGGTAAGATGGCTATGGG
326 GACTGTATATGACAATTTAAGGTCTGAAAAGGGATTGATAGGTCAGAGGGTAAGATGGATGTGGG
* * *
15765293 GTTGGTTAGTACTGATAAAGGGAAGCATTATTCATGGTAGGATAATAAAGAAAGTAACCTTATGG
391 GTTGGTTGGTACTGATAAAGGGAAGCATTATTCATGGTAGGATAATATAGAGAGTAACCTTATGG
* *
15765358 TGGGTAGGGTTGATAACCCCTGAACTATTGTCTATCAAAGCTCATAACATAAGCTTTAGTCTCCT
456 TGGGTAGGGTTGATAACCCCTGAACTGTTGTCTATCAAAGCTCATAGCATAAGCTTTAGTCTCCT
* * *
15765423 TTTTCTTTAGGGCTCTCTTGGTGGAAAATTCTCATTCTTTCAACTTGCCATTCTTAATGGCATTT
521 TTTTCTTTAGGGCTCTCTTGGTGGAAACTTCTCATTCTTCCAACTTGCCATTCTTAATGGCATTC
* * * * *
15765488 TCAATAATTTCACTCGAGATCACCAAGTCGAAGAAATTTCTTGTTGCATTCCCTATTATTTTTTC
586 TCAATGATTTCACTCGAGATCACCAAGTCGATGAAATTTTTTGTTGCATTCCCTATCATCTTTTC
*
15765553 ATAATAGGGAGATTTTAAAGTGCTGACAAACAACATTGTGGTTTTTTTTTCAATTAGAAGATGTT
651 ATAATAGGGAGATTTTAAAGTGCTGACAAACAACATTGTGGTTTTTTTTTCAATTAGAAGAGGTT
* *
15765618 GCACTTGAAAAGCTGTATCCTTCCATCTCTAGGCATGTTCCTTAAATGACTCATTTGCCTT
716 GCACTTGAAAAGCTATATCCTTCCATCTCTAAGCATGTTCCTTAAATGACTCATTTGCCTT
* *
15765679 TTTGTGTCAAAGTTTATCATTCCATCCTTAATCAATCGTTGTATTTTATGCTTTAGATTAGTGCA
1 TTTGTGTCAAAGTTTATCATTCCATCCTTAATCAATCGTTGCACTTTATGCTTTAGATTAGTGCA
*
15765744 ATTTTTAGTGGAATAACCAGAAATTCTATAGTGGTAGTCATAATGAGCTATAAGATTATACCACT
66 ATTTTTAGTGGAATAACCAGCAATTCTATAGTGGTAGTCATAATGAGCTATAAGATTATACCACT
* *
15765809 TGGGGTAAAGTGGCTTGAGTGGCTCCAATAGGCTAAGAGCAATTAGATGATTGTTATAAAGCTCT
131 TGAGGTAAAGTGGCTTGAGTGGCTCCAATAGGCTAAGAGCAATTAGATGATTGTTATAGAGCTCT
* * *
15765874 CAATATAACTTTTTATATGTCATGGGGATTGGGTAGAATGTGGGTTTTTCATGAGTAGTTCATTG
196 CGATATAACTTTGTATATGTCATAGGGATTGGGTAGAATGTGGGTTTTTCATGAGTAGTTCATTG
15765939 CTCTTGTGAACCACCCATCAGGCTAGCAGGATAGGTTTGAGGTCTTGA-GGAGGTTGAGCATTGG
261 CTCTTGTGAACCACCCATCAGGCTAGCAGGATAGGTTTGAGGTCTTGAGGGAGGTTGAGCATTGG
* *
15766003 GACTGTATATGACAATTTAAGGTCTGAAAATGGATTGATAGGTCAGAGGGTAAGATGGTTGTGGG
326 GACTGTATATGACAATTTAAGGTCTGAAAAGGGATTGATAGGTCAGAGGGTAAGATGGATGTGGG
* *
15766068 GTTGGTTGGTACTGATAAAAGGAAGCATTATTCATGATAGGATAATATAGAGAGTAACCTTATGG
391 GTTGGTTGGTACTGATAAAGGGAAGCATTATTCATGGTAGGATAATATAGAGAGTAACCTTATGG
* *
15766133 TGGGTAGAGTTGATAACCCCTAAACTGTTGTCTATCAAAGCTCATAGCATAAG-TTTCAGTCTCC
456 TGGGTAGGGTTGATAACCCCTGAACTGTTGTCTATCAAAGCTCATAGCATAAGCTTT-AGTCTCC
* * *
15766197 TTTTTTTTTAGGGCTCTCTTGGTGGAAACTTCTCATTCTTCCAACTTGGCATTCTTAGTGGCATT
520 TTTTTCTTTAGGGCTCTCTTGGTGGAAACTTCTCATTCTTCCAACTTGCCATTCTTAATGGCATT
* * * * *
15766262 CTCAATGATTTCACTCAAGATCACCAAGTTGATGAAATTTTTTGTTGTATTCCTTATCATCATTT
585 CTCAATGATTTCACTCGAGATCACCAAGTCGATGAAATTTTTTGTTGCATTCCCTATCATCTTTT
* * * *
15766327 AATAATAAGGAGATTTTAAAGTGCTAACAAACAACATTGTGGTTTCTTTTTCAATTAGAAGAGGT
650 CATAATAGGGAGATTTTAAAGTGCTGACAAACAACATTGTGGTTTTTTTTTCAATTAGAAGAGGT
*
15766392 TGCACTTGAAAAGCTATATCCTTCTATCTCTAAGCATGTTCCTTAAATGACTCATTTGCCTT
715 TGCACTTGAAAAGCTATATCCTTCCATCTCTAAGCATGTTCCTTAAATGACTCATTTGCCTT
15766454 TTT
1 TTT
15766457 ATTCATATTC
Statistics
Matches: 1445, Mismatches: 107, Indels: 5
0.93 0.07 0.00
Matches are distributed among these distances:
774 3 0.00
775 428 0.30
776 1013 0.70
777 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (776 bp):
TTTGTGTCAAAGTTTATCATTCCATCCTTAATCAATCGTTGCACTTTATGCTTTAGATTAGTGCA
ATTTTTAGTGGAATAACCAGCAATTCTATAGTGGTAGTCATAATGAGCTATAAGATTATACCACT
TGAGGTAAAGTGGCTTGAGTGGCTCCAATAGGCTAAGAGCAATTAGATGATTGTTATAGAGCTCT
CGATATAACTTTGTATATGTCATAGGGATTGGGTAGAATGTGGGTTTTTCATGAGTAGTTCATTG
CTCTTGTGAACCACCCATCAGGCTAGCAGGATAGGTTTGAGGTCTTGAGGGAGGTTGAGCATTGG
GACTGTATATGACAATTTAAGGTCTGAAAAGGGATTGATAGGTCAGAGGGTAAGATGGATGTGGG
GTTGGTTGGTACTGATAAAGGGAAGCATTATTCATGGTAGGATAATATAGAGAGTAACCTTATGG
TGGGTAGGGTTGATAACCCCTGAACTGTTGTCTATCAAAGCTCATAGCATAAGCTTTAGTCTCCT
TTTTCTTTAGGGCTCTCTTGGTGGAAACTTCTCATTCTTCCAACTTGCCATTCTTAATGGCATTC
TCAATGATTTCACTCGAGATCACCAAGTCGATGAAATTTTTTGTTGCATTCCCTATCATCTTTTC
ATAATAGGGAGATTTTAAAGTGCTGACAAACAACATTGTGGTTTTTTTTTCAATTAGAAGAGGTT
GCACTTGAAAAGCTATATCCTTCCATCTCTAAGCATGTTCCTTAAATGACTCATTTGCCTT
Found at i:15772057 original size:8 final size:8
Alignment explanation
Indices: 15772039--15772089 Score: 50
Period size: 8 Copynumber: 6.2 Consensus size: 8
15772029 TAACCACCTA
15772039 TTTTTTA-
1 TTTTTTAT
15772046 TTTTTTATT
1 TTTTTTA-T
*
15772055 TTTTTTCCT
1 TTTTTT-AT
*
15772064 TTTTTTCT
1 TTTTTTAT
*
15772072 TTTGTTAT
1 TTTTTTAT
15772080 TTTTTTAT
1 TTTTTTAT
15772088 TT
1 TT
15772090 CTTTGTTAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 7 0.19
8 17 0.46
9 13 0.35
ACGTcount: A:0.08, C:0.06, G:0.02, T:0.84
Consensus pattern (8 bp):
TTTTTTAT
Found at i:15772613 original size:2 final size:2
Alignment explanation
Indices: 15772606--15772644 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
15772596 ATCCCTCCTC
*
15772606 TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA CA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15772645 GGAGGTATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:15772630 original size:19 final size:19
Alignment explanation
Indices: 15772606--15772642 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15772596 ATCCCTCCTC
*
15772606 TATATATATATATATATAA
1 TATATATATACATATATAA
15772625 TATATATATACATATATA
1 TATATATATACATATATA
15772643 TAGGAGGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TATATATATACATATATAA
Found at i:15772840 original size:2 final size:2
Alignment explanation
Indices: 15772833--15772862 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15772823 TGCCTTTCTC
15772833 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15772863 GAGAACGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15777599 original size:28 final size:28
Alignment explanation
Indices: 15777555--15777635 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
15777545 ATTAAATTAG
15777555 GCTTAGGTAATAAGAAATCATTTACT-A
1 GCTTAGGTAATAAGAAATCATTTACTAA
*
15777582 GTCTTAGGTAATAGGAAATCATTTACTAA
1 G-CTTAGGTAATAAGAAATCATTTACTAA
*
15777611 GCTTGGGTAATAAGAAATCATTTAC
1 GCTTAGGTAATAAGAAATCATTTAC
15777636 AACAGAAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.02
28 46 0.94
29 2 0.04
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.33
Consensus pattern (28 bp):
GCTTAGGTAATAAGAAATCATTTACTAA
Found at i:15778973 original size:17 final size:17
Alignment explanation
Indices: 15778943--15778976 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15778933 ACCTTTAACT
* *
15778943 CTTACGAATCTCTAAAA
1 CTTACAAATATCTAAAA
15778960 CTTACAAATATCTAAAA
1 CTTACAAATATCTAAAA
15778977 ATTGTGAATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (17 bp):
CTTACAAATATCTAAAA
Found at i:15779041 original size:18 final size:18
Alignment explanation
Indices: 15779027--15779235 Score: 77
Period size: 18 Copynumber: 11.8 Consensus size: 18
15779017 AAATCTTTTT
15779027 ACTCTTGCGAATCTTTGA
1 ACTCTTGCGAATCTTTGA
* *
15779045 ACACTTACGAATCTTTGA
1 ACTCTTGCGAATCTTTGA
* * * *
15779063 ACTCTTGCAAACCTCTAA
1 ACTCTTGCGAATCTTTGA
* * * * *
15779081 ACTATTACAAATCTATAA
1 ACTCTTGCGAATCTTTGA
** *
15779099 ACAGTTGCGAATCATTGA
1 ACTCTTGCGAATCTTTGA
* ** *
15779117 ATTCTTATGAAT-TTCTAA
1 ACTCTTGCGAATCTT-TGA
* * *
15779135 ACTTTTACGAACCTTTGA
1 ACTCTTGCGAATCTTTGA
* * *
15779153 A-ACTTGTGAATCTTTCA
1 ACTCTTGCGAATCTTTGA
* * *
15779170 A-ACTTGTGAACCTTTG-
1 ACTCTTGCGAATCTTTGA
*
15779186 ACT-TTACGAATCTTTGA
1 ACTCTTGCGAATCTTTGA
* * *
15779203 ACTTTTGCAAATCTTAGA
1 ACTCTTGCGAATCTTTGA
* *
15779221 ACTATTGTGAATCTT
1 ACTCTTGCGAATCTT
15779236 GAAATTTTTG
Statistics
Matches: 137, Mismatches: 49, Indels: 10
0.70 0.25 0.05
Matches are distributed among these distances:
16 11 0.08
17 28 0.20
18 96 0.70
19 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (18 bp):
ACTCTTGCGAATCTTTGA
Found at i:15779172 original size:17 final size:17
Alignment explanation
Indices: 15779143--15779184 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
15779133 AAACTTTTAC
*
15779143 GAACCTTTGAAACTTGT
1 GAACCTTTCAAACTTGT
*
15779160 GAATCTTTCAAACTTGT
1 GAACCTTTCAAACTTGT
15779177 GAACCTTT
1 GAACCTTT
15779185 GACTTTACGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (17 bp):
GAACCTTTCAAACTTGT
Found at i:15779322 original size:21 final size:19
Alignment explanation
Indices: 15779284--15779322 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
15779274 ACCCCACTTA
*
15779284 TGAATCTTTGAATCATTTG
1 TGAATCTTGGAATCATTTG
15779303 TGAATCTCTGGAATTCATTT
1 TGAATCT-TGGAA-TCATTT
15779323 TTGCAAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (19 bp):
TGAATCTTGGAATCATTTG
Found at i:15779429 original size:22 final size:21
Alignment explanation
Indices: 15779382--15779429 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
15779372 AACTCTGATA
*
15779382 TGAATGTAAAGACCTTTAATG
1 TGAATGTAAAGACCTCTAATG
* *
15779403 TGAATGTAGAGACCTCTAGTTG
1 TGAATGTAAAGACCTCTA-ATG
15779425 TGAAT
1 TGAAT
15779430 CTTTGACTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (21 bp):
TGAATGTAAAGACCTCTAATG
Found at i:15779465 original size:41 final size:41
Alignment explanation
Indices: 15779415--15779540 Score: 130
Period size: 41 Copynumber: 3.1 Consensus size: 41
15779405 AATGTAGAGA
*
15779415 CCTCTAGTTGTGAATCTTTGACTCTAATGTGAATCCAAAGT
1 CCTCTAGTTGTGAATCTTTGACTCTGATGTGAATCCAAAGT
* ** * * *
15779456 CCTCCAGTTGTGAATAGTTAACTTTGTTGTGAATCCATATA-T
1 CCTCTAGTTGTGAATCTTTGACTCTGATGTGAATCCA-A-AGT
* * *
15779498 -CTTTAATTGTGAATCTTTGACTCTGATATGAATCCAAAGT
1 CCTCTAGTTGTGAATCTTTGACTCTGATGTGAATCCAAAGT
15779538 CCT
1 CCT
15779541 ATAACTATGA
Statistics
Matches: 65, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
39 1 0.02
40 2 0.03
41 59 0.91
42 2 0.03
43 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (41 bp):
CCTCTAGTTGTGAATCTTTGACTCTGATGTGAATCCAAAGT
Found at i:15779926 original size:47 final size:47
Alignment explanation
Indices: 15779828--15779930 Score: 120
Period size: 47 Copynumber: 2.2 Consensus size: 47
15779818 GGAATTCAGC
* * * *
15779828 TTTTTCAAATTTATTTTTAAAGTTGTAGAGCCTCTAATGAGATGTGA
1 TTTTTCAAATTTATTTTCAAAGTTGTAGAGCCTATAATGAAATGAGA
**
15779875 TTTTTCAAATTTATTTTCAAATGTTGT-GAAGTTTATAATGAAATGAG-
1 TTTTTCAAATTTATTTTCAAA-GTTGTAG-AGCCTATAATGAAATGAGA
15779922 TTTTTCAAA
1 TTTTTCAAA
15779931 AATTAAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 30 0.62
48 18 0.38
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.47
Consensus pattern (47 bp):
TTTTTCAAATTTATTTTCAAAGTTGTAGAGCCTATAATGAAATGAGA
Found at i:15780502 original size:24 final size:24
Alignment explanation
Indices: 15780475--15780570 Score: 84
Period size: 24 Copynumber: 3.9 Consensus size: 24
15780465 ACAAAATCAT
15780475 AATCATACAAAAAAATTATAAAAA
1 AATCATACAAAAAAATTATAAAAA
* * *
15780499 AATCATACAAAAAAGTCATTAAAA
1 AATCATACAAAAAAATTATAAAAA
* ** * *
15780523 CATCATGTAATAATATTATAATAAA
1 AATCATACAAAAAAATTATAA-AAA
* *
15780548 AATTATACAAAACATATTATAAA
1 AATCATACAAAA-AAATTATAAA
15780571 TCATGCAATA
Statistics
Matches: 54, Mismatches: 16, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
24 34 0.63
25 11 0.20
26 9 0.17
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.27
Consensus pattern (24 bp):
AATCATACAAAAAAATTATAAAAA
Found at i:15780510 original size:13 final size:13
Alignment explanation
Indices: 15780475--15780517 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
15780465 ACAAAATCAT
15780475 AATCATACAAAAA
1 AATCATACAAAAA
*
15780488 AAT--TATAAAAA
1 AATCATACAAAAA
15780499 AATCATACAAAAA
1 AATCATACAAAAA
*
15780512 AGTCAT
1 AATCAT
15780518 TAAAACATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 10 0.40
13 15 0.60
ACGTcount: A:0.65, C:0.12, G:0.02, T:0.21
Consensus pattern (13 bp):
AATCATACAAAAA
Found at i:15780586 original size:17 final size:17
Alignment explanation
Indices: 15780561--15780596 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15780551 TATACAAAAC
*
15780561 ATATTATAAATCATGCA
1 ATATCATAAATCATGCA
*
15780578 ATATCATAAATCATTCA
1 ATATCATAAATCATGCA
15780595 AT
1 AT
15780597 GCAAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (17 bp):
ATATCATAAATCATGCA
Found at i:15780629 original size:23 final size:22
Alignment explanation
Indices: 15780599--15780674 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 22
15780589 CATTCAATGC
15780599 AAAAATATCATAACAAATCATGT
1 AAAAATATCATAA-AAATCATGT
*
15780622 AAAAATATCCTAATAAAAATCTTGT
1 AAAAATAT-C--ATAAAAATCATGT
*
15780647 AAAAATA--ATAAAAATCATGC
1 AAAAATATCATAAAAATCATGT
*
15780667 AATAATAT
1 AAAAATAT
15780675 AAGAATGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
20 17 0.38
23 8 0.18
24 1 0.02
25 15 0.33
26 4 0.09
ACGTcount: A:0.58, C:0.11, G:0.04, T:0.28
Consensus pattern (22 bp):
AAAAATATCATAAAAATCATGT
Found at i:15780670 original size:17 final size:17
Alignment explanation
Indices: 15780650--15780707 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
15780640 ATCTTGTAAA
15780650 AATAATAAAAATCATGC
1 AATAATAAAAATCATGC
*
15780667 AATAATATAAGA--ATG-
1 AATAATA-AAAATCATGC
15780682 AA-AACTAAAAATCATGC
1 AATAA-TAAAAATCATGC
*
15780699 AAAAATAAA
1 AATAATAAA
15780708 CCATTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
14 5 0.15
15 4 0.12
16 6 0.18
17 13 0.39
18 5 0.15
ACGTcount: A:0.64, C:0.09, G:0.07, T:0.21
Consensus pattern (17 bp):
AATAATAAAAATCATGC
Found at i:15781453 original size:131 final size:131
Alignment explanation
Indices: 15781301--15781760 Score: 318
Period size: 133 Copynumber: 3.5 Consensus size: 131
15781291 AATTTTTCAT
* * *
15781301 CATTGTATAAAGTATTGAAAAAAATAA-TTGAGCAACGATATTAAAAATTCATTGCAAATAAAAT
1 CATTCTATAAAATATT--AAAAAATAACTTAAGCAACGATATTAAAAA-TCATTGCAAATAAAA-
15781365 AAACTTTT-GCAACAA-TAAGTTTTTATCATTACAAA-AATTATAAAAGTTTTTGTAACAA-CAA
62 AAACTTTTAGCAACAACTAAGTTTTTATCATTACAAATAA-TATAAAAGTTTTTGTAACAATC--
*
15781426 TT-TTTGT
124 TTGTTTGC
* * * * ** *
15781433 CATTCTTTAAAATATTAAAAAATAACTTAAGCAATGACATTGAAAAAT-AGTTGTAAATTGAACA
1 CATTCTATAAAATATTAAAAAATAACTTAAGCAACGATATT-AAAAATCA-TTGCAAATAAAAAA
* ** * *
15781497 AGTTTTACGCAACAACTTTGTTTTTGTCATTACAAATAATATAAAATTTTTTGTAACAATCTTGT
64 ACTTTTA-GCAACAACTAAGTTTTTATCATTACAAATAATATAAAAGTTTTTGTAACAATCTTGT
15781562 TTGC
128 TTGC
* * * * * * *
15781566 CATTGTATAAAATATTAAAATATAATTTAAGCAACAATCATGAAAAATCATTACAAATAAAAAAG
1 CATTCTATAAAATATTAAAAAATAACTTAAGCAACGAT-ATTAAAAATCATTGCAAATAAAAAAA
* * * ** * *
15781631 GTATTTA-TAACAAAT-TTTTTGTTGTCATTACAAATGTAATA-AAAA-TTTTTGTAACTACTCT
65 CT-TTTAGCAACAACTAAGTTT-TTATCATTACAAA--TAATATAAAAGTTTTTGTAAC-AATCT
*
15781692 TG-TTGT
125 TGTTTGC
** * * * **
15781698 CATT-TCATAAAGGATTTAAAAATAGCTTAAACAATAACT-TTAAAAATCATTGCAAATAAAAAA
1 CATTCT-ATAAAATATTAAAAAATAACTTAAGCAACGA-TATTAAAAATCATTGCAAATAAAAAA
15781761 TGTATTCGCA
Statistics
Matches: 265, Mismatches: 45, Indels: 37
0.76 0.13 0.11
Matches are distributed among these distances:
130 16 0.06
131 49 0.18
132 86 0.32
133 99 0.37
134 15 0.06
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (131 bp):
CATTCTATAAAATATTAAAAAATAACTTAAGCAACGATATTAAAAATCATTGCAAATAAAAAAAC
TTTTAGCAACAACTAAGTTTTTATCATTACAAATAATATAAAAGTTTTTGTAACAATCTTGTTTG
C
Found at i:15781855 original size:128 final size:131
Alignment explanation
Indices: 15781506--15781919 Score: 341
Period size: 132 Copynumber: 3.2 Consensus size: 131
15781496 AAGTTTTACG
* * *
15781506 CAACAACTTTGTTT-TTGTCATTACAAATA-ATATAAAATTTTTTGTAACAA-TCTTGTT-TGCC
1 CAACAAATTT-TTTGTTGTCATTACAAATATA-ATAAAAATTTTTATAACAACTCTTGTTAT--C
* * * * * * *
15781567 ATTGTATAAAATA-TTAAAATATAATTTAAGCAACAATCATGAAAAATCATTACAAATAAAAAAG
62 ATTGCATAAAAGATTTAAAA-ATAACTTAAACAATAA-CTTTAAAAATCATTACAAATAAAAAAG
*
15781631 GTATTTA
125 GTATTCA
* * * * * *
15781638 TAACAAATTTTTTGTTGTCATTACAAATGTAATAAAAATTTTTGTAACTACTCTTGTTGTCATTT
1 CAACAAATTTTTTGTTGTCATTACAAATATAATAAAAATTTTTATAACAACTCTTGTTATCATTG
* * * *
15781703 CATAAAGGATTTAAAAATAGCTTAAACAATAACTTTAAAAATCATTGCAAATAAAAAATGTATTC
66 CATAAAAGATTTAAAAATAACTTAAACAATAACTTTAAAAATCATTACAAATAAAAAAGGTATTC
*
15781768 G
131 A
* * **
15781769 CAA-GAATTTTTTGTTGTCGTTAC-AATATAAT-AAAATTTTTCATAACAACAT-TT-TTATTGT
1 CAACAAATTTTTTGTTGTCATTACAAATATAATAAAAATTTTT-ATAACAAC-TCTTGTTATCAT
** ** *
15781829 TGCATAAAAGATTTAAAAATAACTTAAGTAACGATTTTGAAAAAT-AGTTACAAATAAAATAAGG
64 TGCATAAAAGATTTAAAAATAACTTAAACAATAACTTT-AAAAATCA-TTACAAATAAAA-AAGG
15781893 T-TTCA
126 TATTCA
* *
15781898 CAA-TAATTTTTTGTTGTAATTA
1 CAACAAATTTTTTGTTGTCATTA
15781920 GGAATTGTAG
Statistics
Matches: 230, Mismatches: 42, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
128 44 0.19
129 54 0.23
130 23 0.10
131 33 0.14
132 61 0.27
133 14 0.06
134 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.39
Consensus pattern (131 bp):
CAACAAATTTTTTGTTGTCATTACAAATATAATAAAAATTTTTATAACAACTCTTGTTATCATTG
CATAAAAGATTTAAAAATAACTTAAACAATAACTTTAAAAATCATTACAAATAAAAAAGGTATTC
A
Done.