Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167904.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_17, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21107920
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Warning! 100000 characters in sequence are not A, C, G, or T
File 94 of 121
Found at i:15922155 original size:13 final size:13
Alignment explanation
Indices: 15922137--15922163 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15922127 ATTTTTATAT
15922137 TTTCATTAAATAA
1 TTTCATTAAATAA
15922150 TTTCATTAAATAA
1 TTTCATTAAATAA
15922163 T
1 T
15922164 CACATCAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTCATTAAATAA
Found at i:15926791 original size:2 final size:2
Alignment explanation
Indices: 15926784--15926819 Score: 54
Period size: 2 Copynumber: 17.5 Consensus size: 2
15926774 TGAAAGTGAA
*
15926784 AT AT AT AT AT AT AT AT AT AGT AT AT GT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT A
15926820 CACACACTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15933451 original size:16 final size:16
Alignment explanation
Indices: 15933432--15933462 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15933422 ATTTTTAAAA
*
15933432 TTTTATTTTGTTTTAT
1 TTTTATTTTATTTTAT
15933448 TTTTATTTTATTTTA
1 TTTTATTTTATTTTA
15933463 AATTTATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTATTTTATTTTAT
Found at i:15933673 original size:15 final size:15
Alignment explanation
Indices: 15933646--15933683 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
15933636 TATTAATATA
*
15933646 ATATTATTTATTAAT
1 ATATTATTCATTAAT
15933661 ATATTATTCATTAAT
1 ATATTATTCATTAAT
*
15933676 ATAATATT
1 ATATTATT
15933684 TATATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTATTCATTAAT
Found at i:15933673 original size:22 final size:21
Alignment explanation
Indices: 15933568--15933673 Score: 96
Period size: 22 Copynumber: 5.0 Consensus size: 21
15933558 GCTTCATTTG
* *
15933568 TTATTAATA-ATATAATAATAT
1 TTATTAATATAT-TATTATTAT
15933589 TTATTAATATATTATAATATTAT
1 TTATTAATATATTAT--TATTAT
15933612 TTATTTAATATTATT-TTATTAAT
1 TTA-TTAATA-TATTATTATT-AT
15933635 TTATTAATATA--A-TATTAT
1 TTATTAATATATTATTATTAT
15933653 TTATTAATATATTATTCATTA
1 TTATTAATATATTATT-ATTA
15933674 ATATAATATT
Statistics
Matches: 72, Mismatches: 2, Indels: 21
0.76 0.02 0.22
Matches are distributed among these distances:
18 13 0.18
19 4 0.06
20 1 0.01
21 14 0.19
22 16 0.22
23 13 0.18
24 7 0.10
25 4 0.06
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATTAATATATTATTATTAT
Found at i:15933709 original size:35 final size:33
Alignment explanation
Indices: 15933628--15933721 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 33
15933618 AATATTATTT
* * *
15933628 TATTAATTTATTAATATAATATTATTTATTAATA
1 TATT-ATTTATTAATATAATATTATTAATAAAAA
*
15933662 TATTATTCATTAATATAATATTTATATAATAAAAA
1 TATTATTTATTAATATAATA-TTAT-TAATAAAAA
15933697 TATTATTTATTAATATAATAATTAT
1 TATTATTTATTAATATAAT-ATTAT
15933722 GATGTCACTA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
33 15 0.29
34 8 0.15
35 28 0.54
36 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (33 bp):
TATTATTTATTAATATAATATTATTAATAAAAA
Found at i:15933737 original size:35 final size:32
Alignment explanation
Indices: 15933575--15933721 Score: 99
Period size: 35 Copynumber: 4.5 Consensus size: 32
15933565 TTGTTATTAA
*
15933575 TAATATAATAATATTTATTAATATATTATAATATTAT
1 TAATATAATAAT-TATATTAATATA-T-T-AT-TTAT
* * *
15933612 TTATTTAAT-ATTAT-TT--TAT-TAATTTAT
1 TAATATAATAATTATATTAATATATTATTTAT
*
15933639 TAATATAAT-ATTATTTATTAATATATTATTCAT
1 TAATATAATAATTA--TATTAATATATTATTTAT
* *
15933672 TAATATAATATTTATATAATAAAAATATTATTTAT
1 TAATATAATAATTATAT--T-AATATATTATTTAT
15933707 TAATATAATAATTAT
1 TAATATAATAATTAT
15933722 GATGTCACTA
Statistics
Matches: 88, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
27 15 0.17
28 2 0.02
29 1 0.01
30 3 0.03
32 9 0.10
33 15 0.17
34 6 0.07
35 28 0.32
36 2 0.02
37 7 0.08
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.54
Consensus pattern (32 bp):
TAATATAATAATTATATTAATATATTATTTAT
Found at i:15934577 original size:13 final size:13
Alignment explanation
Indices: 15934561--15934586 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15934551 ATCCTCAAAA
15934561 TTTATTTTTATTT
1 TTTATTTTTATTT
15934574 TTTATTTTTATTT
1 TTTATTTTTATTT
15934587 CTAAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:15934872 original size:14 final size:15
Alignment explanation
Indices: 15934863--15934900 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
15934853 AATTTTTAAG
*
15934863 TTTTA-TTTTTATAT
1 TTTTATTTTTTACAT
15934877 TTTTATATTTTTACAT
1 TTTTAT-TTTTTACAT
15934893 TTTTATTT
1 TTTTATTT
15934901 AAAAAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 5 0.24
15 2 0.10
16 14 0.67
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTTTTTACAT
Found at i:15934877 original size:8 final size:8
Alignment explanation
Indices: 15934866--15934898 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
15934856 TTTTAAGTTT
15934866 TATTTTTA
1 TATTTTTA
15934874 TATTTTTA
1 TATTTTTA
15934882 TATTTTTA
1 TATTTTTA
*
15934890 CATTTTTA
1 TATTTTTA
15934898 T
1 T
15934899 TTAAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTTTTA
Found at i:15935352 original size:4 final size:4
Alignment explanation
Indices: 15935343--15935377 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
15935333 AATACTTTAA
*
15935343 AAAT AAAT AAAAT AAGT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AA
15935378 TAGAAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:15935634 original size:12 final size:12
Alignment explanation
Indices: 15935615--15935652 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
15935605 CCTCTCTCAT
15935615 TCTTTCTTTCGTC
1 TCTTTCTTTC-TC
15935628 T-TTTCTTTTCTC
1 TCTTTC-TTTCTC
15935640 TCTTTCTTTCTC
1 TCTTTCTTTCTC
15935652 T
1 T
15935653 AGACCAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 14 0.61
13 9 0.39
ACGTcount: A:0.00, C:0.29, G:0.03, T:0.68
Consensus pattern (12 bp):
TCTTTCTTTCTC
Found at i:15936371 original size:41 final size:41
Alignment explanation
Indices: 15936306--15936394 Score: 99
Period size: 41 Copynumber: 2.2 Consensus size: 41
15936296 TTTGAATAAC
* *
15936306 ATAAA-AACTCCTTTAAAAAGAGGCTCAAAAACTTTAAAAA
1 ATAAATAAATCCTCTAAAAAGAGGCTCAAAAACTTTAAAAA
* * ***
15936346 ATAAATAAATCCTCTAAACAGAGGCTTAATGGCTTTAAAAA
1 ATAAATAAATCCTCTAAAAAGAGGCTCAAAAACTTTAAAAA
*
15936387 ATAGATAA
1 ATAAATAA
15936395 GGCTCTTCTA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 5 0.12
41 35 0.88
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.25
Consensus pattern (41 bp):
ATAAATAAATCCTCTAAAAAGAGGCTCAAAAACTTTAAAAA
Found at i:15936414 original size:43 final size:43
Alignment explanation
Indices: 15936336--15936691 Score: 195
Period size: 43 Copynumber: 7.9 Consensus size: 43
15936326 AGGCTCAAAA
* * *
15936336 ACTTTAAAAAATAAATAA--ATCCTCTAAACAGAGGCTTAATG
1 ACTTTAAAAAATAGATAAGGCTCTTCTAAACAGAGGCTTAATG
* *
15936377 GCTTTAAAAAATAGATAAGGCTCTTCTAAAC-GAAGGCTTAATA
1 ACTTTAAAAAATAGATAAGGCTCTTCTAAACAG-AGGCTTAATG
* * *
15936420 ATTTTAAAAAATAGATAAGGCT-TCTCCAAACAGAGGCTTTATGACTTTAAAA
1 ACTTTAAAAAATAGATAAGGCTCT-TCTAAACAGAGGC-TTA--A---T---G
* * *
15936472 ACTTTAAAAAATAGATAAGACTCTTTTAAATAGAGGCTCT-ATG
1 ACTTTAAAAAATAGATAAGGCTCTTCTAAACAGAGGCT-TAATG
* * * * *
15936515 ACTTTAAAAATAAATAAATAAAGCTCCTCTAAACAGAGACTCAATG
1 ACTTT--AAA-AAATAGATAAGGCTCTTCTAAACAGAGGCTTAATG
* * * * *
15936561 ACTTTTGAAAGAT-GAATCAGGCTCCTT-TAAACAAAGGCTTAACG
1 AC-TTTAAAAAATAG-ATAAGGCT-CTTCTAAACAGAGGCTTAATG
* * * *
15936605 ACTTTTTAAAAATAAGTAAATAAAGTTCTTCTAAATAGAGGCTTAATG
1 AC--TTT-AAAA-AA-TAGATAAGGCTCTTCTAAACAGAGGCTTAATG
* * *
15936653 ACTTTTTAAAAATAAATAAGGCTCCTCTAAACAGAGGCT
1 AC-TTTAAAAAATAGATAAGGCTCTTCTAAACAGAGGCT
15936692 CTTTTTAACA
Statistics
Matches: 240, Mismatches: 46, Indels: 55
0.70 0.13 0.16
Matches are distributed among these distances:
41 16 0.07
42 2 0.01
43 53 0.22
44 51 0.21
45 13 0.05
46 36 0.15
47 11 0.05
48 22 0.09
49 2 0.01
51 1 0.00
52 32 0.13
53 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.29
Consensus pattern (43 bp):
ACTTTAAAAAATAGATAAGGCTCTTCTAAACAGAGGCTTAATG
Found at i:15936507 original size:52 final size:52
Alignment explanation
Indices: 15936422--15936524 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 52
15936412 GCTTAATAAT
* *
15936422 TTTAAAAAATAGATAAGGCTTCTCCAAACAGAGGCTTTATGACTTTAAAAAC
1 TTTAAAAAATAGATAAGACTTCTCCAAACAGAGGCTCTATGACTTTAAAAAC
** *
15936474 TTTAAAAAATAGATAAGAC-TCTTTTAAATAGAGGCTCTATGACTTTAAAAA
1 TTTAAAAAATAGATAAGACTTC-TCCAAACAGAGGCTCTATGACTTTAAAAA
15936525 TAAATAAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
51 2 0.04
52 43 0.96
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (52 bp):
TTTAAAAAATAGATAAGACTTCTCCAAACAGAGGCTCTATGACTTTAAAAAC
Found at i:15936628 original size:92 final size:92
Alignment explanation
Indices: 15936517--15936691 Score: 242
Period size: 92 Copynumber: 1.9 Consensus size: 92
15936507 GCTCTATGAC
* * *
15936517 TTTAAAAATAAATAAATAAAGCTCCTCTAAACAGAGACTCAATGACTTTTGAAAGATGAATCAGG
1 TTTAAAAATAAATAAATAAAGCTCCTCTAAACAGAGACTCAATGACTTTTGAAAAATAAATAAGG
*
15936582 CTCCTTTAAACAAAGGCTTAACGACTT
66 CTCCTCTAAACAAAGGCTTAACGACTT
* * * * * * *
15936609 TTTAAAAATAAGTAAATAAAGTTCTTCTAAATAGAGGCTTAATGACTTTTTAAAAATAAATAAGG
1 TTTAAAAATAAATAAATAAAGCTCCTCTAAACAGAGACTCAATGACTTTTGAAAAATAAATAAGG
*
15936674 CTCCTCTAAACAGAGGCT
66 CTCCTCTAAACAAAGGCT
15936692 CTTTTTAACA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
92 71 1.00
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (92 bp):
TTTAAAAATAAATAAATAAAGCTCCTCTAAACAGAGACTCAATGACTTTTGAAAAATAAATAAGG
CTCCTCTAAACAAAGGCTTAACGACTT
Found at i:15936689 original size:44 final size:44
Alignment explanation
Indices: 15936526--15936691 Score: 170
Period size: 44 Copynumber: 3.7 Consensus size: 44
15936516 CTTTAAAAAT
* * *
15936526 AAATAAATAAAGCTCCTCTAAACAGAGACTCAATGACTTTTGAA
1 AAATAAATAAAGCTCCTCTAAACAGAGGCTTAATGACTTTTTAA
* * * * * * *
15936570 AGATGAATCAGGCTCCTTTAAACAAAGGCTTAACGACTTTTTAAAA
1 AAATAAATAAAGCTCCTCTAAACAGAGGCTTAATGACTTTTT--AA
* * *
15936616 ATAAGTAAATAAAGTTCTTCTAAATAGAGGCTTAATGACTTTTTAA
1 A-AA-TAAATAAAGCTCCTCTAAACAGAGGCTTAATGACTTTTTAA
*
15936662 AAATAAATAAGGCTCCTCTAAACAGAGGCT
1 AAATAAATAAAGCTCCTCTAAACAGAGGCT
15936692 CTTTTTAACA
Statistics
Matches: 94, Mismatches: 24, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
44 55 0.59
45 2 0.02
46 6 0.06
47 1 0.01
48 30 0.32
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (44 bp):
AAATAAATAAAGCTCCTCTAAACAGAGGCTTAATGACTTTTTAA
Found at i:15937781 original size:26 final size:25
Alignment explanation
Indices: 15937752--15937817 Score: 80
Period size: 27 Copynumber: 2.6 Consensus size: 25
15937742 TGAGTCCTCC
*
15937752 TTTTTCATTTTTTATTTTCTTCTCTT
1 TTTTTCATTTTTTATTTT-TTCTATT
*
15937778 TTTTTCATTTTTTTTATTTTTTTTATT
1 TTTTTCA--TTTTTTATTTTTTCTATT
15937805 TTTTTC-TTTTTTA
1 TTTTTCATTTTTTA
15937818 AAAGTAGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
24 7 0.19
26 7 0.19
27 11 0.31
28 11 0.31
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (25 bp):
TTTTTCATTTTTTATTTTTTCTATT
Found at i:15937790 original size:9 final size:9
Alignment explanation
Indices: 15937752--15937816 Score: 66
Period size: 9 Copynumber: 7.4 Consensus size: 9
15937742 TGAGTCCTCC
15937752 TTTTTCA-T
1 TTTTTCATT
15937760 TTTTT-ATT
1 TTTTTCATT
15937768 TTCTTCTC-TT
1 TT-TT-TCATT
15937778 TTTTTCATT
1 TTTTTCATT
*
15937787 TTTTTTATT
1 TTTTTCATT
*
15937796 TTTTTTATT
1 TTTTTCATT
15937805 TTTTTC-TT
1 TTTTTCATT
15937813 TTTT
1 TTTT
15937817 AAAAGTAGTA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
7 1 0.02
8 16 0.32
9 28 0.56
10 5 0.10
ACGTcount: A:0.08, C:0.09, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTCATT
Found at i:15939340 original size:14 final size:14
Alignment explanation
Indices: 15939321--15939347 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15939311 GAGTTAAGTC
15939321 TCCAAATATTTTCG
1 TCCAAATATTTTCG
15939335 TCCAAATATTTTC
1 TCCAAATATTTTC
15939348 AATACGTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.44
Consensus pattern (14 bp):
TCCAAATATTTTCG
Found at i:15943682 original size:18 final size:18
Alignment explanation
Indices: 15943661--15943699 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
15943651 ATTACCAACG
*
15943661 ATTTACTGACGAATTTTT
1 ATTTACTGACGAAGTTTT
* *
15943679 ATTTATTGATGAAGTTTT
1 ATTTACTGACGAAGTTTT
15943697 ATT
1 ATT
15943700 ATTACTAACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.13, T:0.54
Consensus pattern (18 bp):
ATTTACTGACGAAGTTTT
Found at i:15944354 original size:22 final size:20
Alignment explanation
Indices: 15944316--15944355 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
15944306 AATTATTTTT
*
15944316 TAAAAAAACAAAGAAAATGA
1 TAAAAAAAAAAAGAAAATGA
15944336 TAAAAAAAAAGAAGCAAAAT
1 TAAAAAAAAA-AAG-AAAAT
15944356 AGGGTGACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.75, C:0.05, G:0.10, T:0.10
Consensus pattern (20 bp):
TAAAAAAAAAAAGAAAATGA
Found at i:15946516 original size:16 final size:17
Alignment explanation
Indices: 15946495--15946537 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
15946485 ATTAATTCCT
15946495 AATTATTTTT-TATTAA
1 AATTATTTTTATATTAA
15946511 AATTATTATTTGATATTAA
1 AATTATT-TTT-ATATTAA
*
15946530 AATAATTT
1 AATTATTT
15946538 AATACTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 3 0.13
18 1 0.04
19 12 0.52
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
AATTATTTTTATATTAA
Found at i:15948152 original size:132 final size:133
Alignment explanation
Indices: 15947940--15948221 Score: 413
Period size: 132 Copynumber: 2.1 Consensus size: 133
15947930 CTTAGTAATT
* * * ** *
15947940 AAATATCACTATATTTGGTATTATTAAAAATGAAACATTGTTTTTATGTGAATGTACCAAAATAA
1 AAATATTACTATATTTAGTATTATTAAAAATCAAACATTGAATTTATGTGAAAGTACCAAAATAA
* *
15948005 TCATACATATTATAATAATTATACAAGTTAACAATTTTAATATTATTTAAAATAATAATTTGTAT
66 CCATACATATTATAATAATTACACAAGTTAACAATTTTAATATTATTTAAAATAATAATTTGTAT
15948070 AAA
131 AAA
* * *
15948073 AAATATTACTGTATTTAGTATTATTAAAAATCAAACATT-AATTTGTGTGAAAGTACCAAAATGA
1 AAATATTACTATATTTAGTATTATTAAAAATCAAACATTGAATTTATGTGAAAGTACCAAAATAA
* *
15948137 CCATGCATATTATAATAATTACACAAGTTAATAATTTTAATATTATTTAAAATAATAATTTGTAT
66 CCATACATATTATAATAATTACACAAGTTAACAATTTTAATATTATTTAAAATAATAATTTGTAT
*
15948202 ATA
131 AAA
*
15948205 AAATATTAGTAATATTT
1 AAATATTACT-ATATTT
15948222 TTTTTAGTTT
Statistics
Matches: 132, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
132 92 0.70
133 40 0.30
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (133 bp):
AAATATTACTATATTTAGTATTATTAAAAATCAAACATTGAATTTATGTGAAAGTACCAAAATAA
CCATACATATTATAATAATTACACAAGTTAACAATTTTAATATTATTTAAAATAATAATTTGTAT
AAA
Found at i:15952010 original size:17 final size:17
Alignment explanation
Indices: 15951988--15952020 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15951978 TAGAAGAGTT
15951988 AAATAAA-ATGTTTATTC
1 AAATAAATAT-TTTATTC
15952005 AAATAAATATTTTATT
1 AAATAAATATTTTATT
15952021 TGCTTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
AAATAAATATTTTATTC
Found at i:15952457 original size:17 final size:18
Alignment explanation
Indices: 15952424--15952457 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15952414 GTATTTGATT
*
15952424 TTAAAATTTTGGATATTA
1 TTAAAAATTTGGATATTA
15952442 TTAAAAATTT-GATATT
1 TTAAAAATTTGGATATT
15952458 TTTTTCATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (18 bp):
TTAAAAATTTGGATATTA
Found at i:15954016 original size:16 final size:17
Alignment explanation
Indices: 15953989--15954022 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15953979 AAAAATTATA
15953989 AATTTAAAATATAATTT
1 AATTTAAAATATAATTT
*
15954006 AATTT-AAATATATTTT
1 AATTTAAAATATAATTT
15954022 A
1 A
15954023 TTCTTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTTAAAATATAATTT
Found at i:15954104 original size:27 final size:27
Alignment explanation
Indices: 15954074--15954130 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
15954064 AATTTGATCA
*
15954074 ATTAAATTTTTAAAATTAATAAATATG
1 ATTAAAATTTTAAAATTAATAAATATG
15954101 ATTAAAATTTTAAAATTAATAAATATG
1 ATTAAAATTTTAAAATTAATAAATATG
15954128 ATT
1 ATT
15954131 CAATAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (27 bp):
ATTAAAATTTTAAAATTAATAAATATG
Found at i:15954141 original size:27 final size:26
Alignment explanation
Indices: 15954084--15954143 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 26
15954074 ATTAAATTTT
*
15954084 TAAAATTAATAAATATGATTAAAATTT
1 TAAAATTAATAAATATGATTAAAA-TA
15954111 TAAAATTAATAAATATGATTCAATAA-A
1 TAAAATTAATAAATATGATT-AA-AATA
15954138 TAAAAT
1 TAAAAT
15954144 ATTATAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 26 0.87
28 2 0.07
29 2 0.07
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (26 bp):
TAAAATTAATAAATATGATTAAAATA
Found at i:15958967 original size:20 final size:18
Alignment explanation
Indices: 15958938--15958978 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
15958928 CATCAATCAC
*
15958938 TAATTCAAATGTTCATATAA
1 TAATTAAAATGTT-ATA-AA
15958958 TAATTAAAATGTTATAAA
1 TAATTAAAATGTTATAAA
15958976 TAA
1 TAA
15958979 AAGTTAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 3 0.15
20 12 0.60
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (18 bp):
TAATTAAAATGTTATAAA
Found at i:15959929 original size:15 final size:16
Alignment explanation
Indices: 15959901--15959931 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
15959891 AATTAATGAA
15959901 ATCATTGAGATAAATT
1 ATCATTGAGATAAATT
15959917 ATCATTG-GATAAATT
1 ATCATTGAGATAAATT
15959932 GTAAGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (16 bp):
ATCATTGAGATAAATT
Found at i:15962107 original size:31 final size:31
Alignment explanation
Indices: 15962072--15962137 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
15962062 CAAAATTAAT
*
15962072 TAAAAAGATAATTTTAGGGTCTTTAAGGAAA
1 TAAAAAGATAATTTTAGGGTCTTGAAGGAAA
* *
15962103 TAAAATGATAGTTTTAGGGTCTTGAAGGAAA
1 TAAAAAGATAATTTTAGGGTCTTGAAGGAAA
15962134 TAAA
1 TAAA
15962138 TTTATTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (31 bp):
TAAAAAGATAATTTTAGGGTCTTGAAGGAAA
Found at i:15964940 original size:21 final size:21
Alignment explanation
Indices: 15964901--15964939 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15964891 GAAAAATAAG
15964901 ATGAAATGAAAAATAAAAACA
1 ATGAAATGAAAAATAAAAACA
*
15964922 ATGAAAT-AAAATTAAAAA
1 ATGAAATGAAAAATAAAAA
15964940 ATGATTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.18
Consensus pattern (21 bp):
ATGAAATGAAAAATAAAAACA
Found at i:15965196 original size:11 final size:11
Alignment explanation
Indices: 15965182--15965217 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
15965172 TTAAAGAATT
*
15965182 TTTTTGTCTTG
1 TTTTTGTTTTG
15965193 TTTTTGTTTTG
1 TTTTTGTTTTG
15965204 -TTTTGTTTTG
1 TTTTTGTTTTG
15965214 TTTT
1 TTTT
15965218 GTTGTTTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.00, C:0.03, G:0.17, T:0.81
Consensus pattern (11 bp):
TTTTTGTTTTG
Found at i:15965202 original size:5 final size:5
Alignment explanation
Indices: 15965183--15965220 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
15965173 TAAAGAATTT
*
15965183 TTTTG TCTTG TTTTTG TTTTG TTTTG TTTTG TTTTG TT
1 TTTTG TTTTG -TTTTG TTTTG TTTTG TTTTG TTTTG TT
15965221 GTTTTGGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.00, C:0.03, G:0.18, T:0.79
Consensus pattern (5 bp):
TTTTG
Found at i:15965605 original size:40 final size:40
Alignment explanation
Indices: 15965543--15965734 Score: 155
Period size: 40 Copynumber: 4.8 Consensus size: 40
15965533 TTATGCAAAG
* *
15965543 ATTTAAGATTTTG-TCAG-AGGTCTTTTAAAATCATTAAAA
1 ATTTAAAATTTTGCT-AGAAGGTCTTTGAAAATCATTAAAA
* * * *
15965582 ATTTAAAAGTTTGCTTGAAGGTCTTTGAAAATCTTTCTAAGA
1 ATTTAAAATTTTGCTAGAAGGTCTTTGAAAATC-AT-TAAAA
*
15965624 ATTTAAAATTTTGCTCGAAGGTCTTTTG-AAATCATTTAAAA
1 ATTTAAAATTTTGCTAGAAGGTC-TTTGAAAATCA-TTAAAA
* * *
15965665 GTTTAAGATTTTGCTAG-AGGTC-TTGGAAATCATTAAAAA
1 ATTTAAAATTTTGCTAGAAGGTCTTTGAAAATCATT-AAAA
* * *
15965704 ATCTAATATTTTACCTAG-AGGTC-TTGAAAAT
1 ATTTAAAATTTT-GCTAGAAGGTCTTTGAAAAT
15965735 AATGTACTTA
Statistics
Matches: 126, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
38 5 0.04
39 31 0.25
40 36 0.29
41 19 0.15
42 31 0.25
43 4 0.03
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (40 bp):
ATTTAAAATTTTGCTAGAAGGTCTTTGAAAATCATTAAAA
Found at i:15965637 original size:42 final size:39
Alignment explanation
Indices: 15965543--15965702 Score: 132
Period size: 42 Copynumber: 4.0 Consensus size: 39
15965533 TTATGCAAAG
* * *
15965543 ATTTAAGATTTTG-TCAG-AGGTCTTTTAAAATCATTAAAA
1 ATTTAAAATTTTGCT-AGAAGGTCTTTGAAAATC-TTTAAA
* *
15965582 ATTTAAAAGTTTGCTTGAAGGTCTTTGAAAATCTTTCTAAGA
1 ATTTAAAATTTTGCTAGAAGGTCTTTGAAAATC-TT-TAA-A
*
15965624 ATTTAAAATTTTGCTCGAAGGTCTTTTG-AAATCATTTAAA
1 ATTTAAAATTTTGCTAGAAGGTC-TTTGAAAATC-TTTAAA
* * *
15965664 AGTTTAAGATTTTGCTAG-AGGTC-TTGGAAATCATTAAA
1 A-TTTAAAATTTTGCTAGAAGGTCTTTGAAAATCTTTAAA
15965702 A
1 A
15965703 AATCTAATAT
Statistics
Matches: 102, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
38 9 0.09
39 17 0.17
40 24 0.24
41 19 0.19
42 29 0.28
43 4 0.04
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (39 bp):
ATTTAAAATTTTGCTAGAAGGTCTTTGAAAATCTTTAAA
Found at i:15965686 original size:82 final size:81
Alignment explanation
Indices: 15965543--15965693 Score: 198
Period size: 82 Copynumber: 1.9 Consensus size: 81
15965533 TTATGCAAAG
* * *
15965543 ATTTAAGATTTTGTCAGAGGTCTTTTAAAATCATTAAAAATTTAAAAGTTTGCTTGAAGGTCTTT
1 ATTTAAAATTTTGTCAGAGGTCTTTTAAAATCATTAAAAATTTAAAAGTTTGCTAGAAGGTCTTG
15965608 GAAAATCTTTCTAAGA
66 GAAAATCTTTCTAAGA
* * * *
15965624 ATTTAAAATTTTGCTC-GAAGGTCTTTTGAAATCATTTAAAAGTTTAAGATTTTGCTAG-AGGTC
1 ATTTAAAATTTTG-TCAG-AGGTCTTTTAAAATCA-TTAAAAATTTAAAAGTTTGCTAGAAGGTC
15965687 TTGGAAA
63 TTGGAAA
15965694 TCATTAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
81 13 0.22
82 28 0.47
83 19 0.32
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (81 bp):
ATTTAAAATTTTGTCAGAGGTCTTTTAAAATCATTAAAAATTTAAAAGTTTGCTAGAAGGTCTTG
GAAAATCTTTCTAAGA
Found at i:15965829 original size:23 final size:23
Alignment explanation
Indices: 15965795--15965838 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15965785 CACTTTAAAA
15965795 TTTTCACCTTTTGTTTCAAAAGT
1 TTTTCACCTTTTGTTTCAAAAGT
*
15965818 TTTTC-CCTTTTTGTTTTAAAA
1 TTTTCACC-TTTTGTTTCAAAA
15965839 CATCTTATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.20, C:0.16, G:0.07, T:0.57
Consensus pattern (23 bp):
TTTTCACCTTTTGTTTCAAAAGT
Found at i:15967702 original size:34 final size:34
Alignment explanation
Indices: 15967632--15967705 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 34
15967622 TTTTTTCATG
15967632 TTTTTCACTTAATCATTCATTTCTTTTTCTTTCCC
1 TTTTTCACTTAATCATT-ATTTCTTTTTCTTTCCC
* *
15967667 TTTTTCACTT-TTCATT-TTTTTTTGTTCTTTCCCC
1 TTTTTCACTTAATCATTATTTCTTT-TTCTTT-CCC
15967701 TTTTT
1 TTTTT
15967706 TTCATTTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 6 0.17
33 6 0.17
34 13 0.37
35 10 0.29
ACGTcount: A:0.09, C:0.23, G:0.01, T:0.66
Consensus pattern (34 bp):
TTTTTCACTTAATCATTATTTCTTTTTCTTTCCC
Found at i:15967706 original size:35 final size:34
Alignment explanation
Indices: 15967632--15967731 Score: 82
Period size: 36 Copynumber: 2.9 Consensus size: 34
15967622 TTTTTTCATG
*
15967632 TTTTTCACTTAATCATTCATTTCTTTTTCTTTCCC-
1 TTTTTCACTT-TTCATT-ATTTCTTTTTCTTTCCCT
*
15967667 TTTTTCACTTTTCATT-TTTTTTTGTTCTTTCCCCTT
1 TTTTTCACTTTTCATTATTTCTTT-TTCTTT-CCC-T
* *
15967703 TTTTTCATTTTTC-TCT-TTTCTCTTTCTTT
1 TTTTTCACTTTTCAT-TATTTCTTTTTCTTT
15967732 TTTTTTTTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
32 6 0.11
33 6 0.11
34 8 0.15
35 17 0.31
36 18 0.33
ACGTcount: A:0.08, C:0.23, G:0.01, T:0.68
Consensus pattern (34 bp):
TTTTTCACTTTTCATTATTTCTTTTTCTTTCCCT
Found at i:15967721 original size:43 final size:43
Alignment explanation
Indices: 15967667--15967819 Score: 120
Period size: 43 Copynumber: 3.5 Consensus size: 43
15967657 TTTCTTTCCC
* *
15967667 TTTTTCACTTTTCATTTTTTTTTGTTCTTTCCCCTT-TTTTTCA
1 TTTTTCTCTTTTC-TTTTTTTTTGTTCTTTCCCATTCTTTTTCA
* * *
15967710 TTTTTCTCTTTTCTCTTTCTTTTTTTTTTTTCTCATTCTTTTTCA
1 TTTTTCTCTTTTCT-TTT-TTTTTGTTCTTTCCCATTCTTTTTCA
* * *
15967755 -TTCTCTCATTTTCTTCTTTTCTTTGTTCTCTT--TATTC-ATTTCA
1 TTTTTCTC-TTTTCTT-TTTT-TTTGTTCT-TTCCCATTCTTTTTCA
15967798 -TTTTCTCGTTTTCTTTTTTTTT
1 TTTTTCTC-TTTTCTTTTTTTTT
15967820 ATTTTTTTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 16
0.76 0.10 0.13
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 33 0.36
44 27 0.30
45 21 0.23
46 2 0.02
ACGTcount: A:0.06, C:0.20, G:0.02, T:0.72
Consensus pattern (43 bp):
TTTTTCTCTTTTCTTTTTTTTTGTTCTTTCCCATTCTTTTTCA
Found at i:15968370 original size:26 final size:23
Alignment explanation
Indices: 15968340--15968412 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 23
15968330 TTTTTCCTCA
15968340 TTTTCTTTTCTTTCTTTTCAATTTTC
1 TTTTCTTTTCTTTCTTTTC---TTTC
* *
15968366 TTTTC-TTACTTT-TCTTCTTTC
1 TTTTCTTTTCTTTCTTTTCTTTC
* *
15968387 TTTTTTTTTCTTTC-TTTCTTTT
1 TTTTCTTTTCTTTCTTTTCTTTC
15968409 TTTT
1 TTTT
15968413 TGTCTTCATT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
21 8 0.21
22 16 0.41
24 4 0.10
25 6 0.15
26 5 0.13
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTCTTTTCTTTCTTTTCTTTC
Found at i:15968390 original size:21 final size:21
Alignment explanation
Indices: 15968339--15968379 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
15968329 TTTTTTCCTC
*
15968339 ATTTTCTTTTCTTTCTTTTCA
1 ATTTTCTTTTCTTACTTTTCA
15968360 ATTTTCTTTTCTTACTTTTC
1 ATTTTCTTTTCTTACTTTTC
15968380 TTCTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTTCTTTTCTTACTTTTCA
Found at i:15968403 original size:18 final size:17
Alignment explanation
Indices: 15968375--15968413 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 17
15968365 CTTTTCTTAC
15968375 TTTTCTTCTTTCTTTTT
1 TTTTCTTCTTTCTTTTT
15968392 TTTTCTTTCTTTCTTTTT
1 TTTTC-TTCTTTCTTTTT
15968410 TTTT
1 TTTT
15968414 GTCTTCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTCTTCTTTCTTTTT
Found at i:15968425 original size:30 final size:31
Alignment explanation
Indices: 15968344--15968425 Score: 73
Period size: 30 Copynumber: 2.7 Consensus size: 31
15968334 TCCTCATTTT
*
15968344 CTTTTCTT-TCTT-TTCAATTTTCTTTTCTTA
1 CTTTTCTTCT-TTCTTCATTTTTCTTTTCTTA
** *
15968374 CTTTTCTTCTTTCTTTTTTTTTC-TTTCTTT
1 CTTTTCTTCTTTCTTCATTTTTCTTTTCTTA
*
15968404 CTTTT-TTTTTGTCTTCATTTTT
1 CTTTTCTTCTT-TCTTCATTTTT
15968426 TACATGCTTC
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
29 4 0.10
30 30 0.71
31 8 0.19
ACGTcount: A:0.05, C:0.18, G:0.01, T:0.76
Consensus pattern (31 bp):
CTTTTCTTCTTTCTTCATTTTTCTTTTCTTA
Found at i:15970522 original size:3 final size:3
Alignment explanation
Indices: 15970493--15970611 Score: 152
Period size: 3 Copynumber: 39.3 Consensus size: 3
15970483 TATTATACCA
* * *
15970493 TAT TAC TAT TAC TAT TAT T-T ATGT TAT TAT TAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
*
15970537 TAT TAT TAT ATAT TAT TAT TAT TAT TAT TAT TAC TACT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
*
15970584 TAT TAT TAT TAT TAT TAT TAT TAC TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
15970612 TTCATTTGTT
Statistics
Matches: 102, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
2 3 0.03
3 93 0.91
4 6 0.06
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:15971561 original size:18 final size:18
Alignment explanation
Indices: 15971538--15971575 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
15971528 CCATAAAAAG
15971538 AAAAAAAT-TTTTCAAAT
1 AAAAAAATCTTTTCAAAT
15971555 AAAAAAATCTTTTCAAAT
1 AAAAAAATCTTTTCAAAT
15971573 AAA
1 AAA
15971576 GTTTTCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAAAATCTTTTCAAAT
Found at i:15971687 original size:17 final size:17
Alignment explanation
Indices: 15971648--15971690 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
15971638 TTCAATAAAC
*
15971648 ATAAAA-AAAAATCTTT
1 ATAAAATAAAAATCCTT
* *
15971664 TTCAAATAAAAATCCTT
1 ATAAAATAAAAATCCTT
15971681 ATAAAATAAA
1 ATAAAATAAA
15971691 TTCATGAGTT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAAAATAAAAATCCTT
Found at i:15982194 original size:45 final size:44
Alignment explanation
Indices: 15982113--15982232 Score: 145
Period size: 45 Copynumber: 2.7 Consensus size: 44
15982103 AGTATTTTGC
* * *
15982113 TTGACAAAAAAAAAAGTTCAAGTT-AAAAACCTAAAAGAGC-GGT
1 TTGACAAAAAAAAAAGTTCAAGTTGAAAACCCAAAAAGA-CAGCT
15982156 TTAGACAAAAAAAAAAGTTCAAGTTGAAAACCCAAAAAGACAGCT
1 TT-GACAAAAAAAAAAGTTCAAGTTGAAAACCCAAAAAGACAGCT
* * *
15982201 TTGATCCAAAGAAAAAGTTCAAATTGAAAACC
1 TTGA-CAAAAAAAAAAGTTCAAGTTGAAAACC
15982233 TTGAAAGGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.03
44 25 0.37
45 40 0.60
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.18
Consensus pattern (44 bp):
TTGACAAAAAAAAAAGTTCAAGTTGAAAACCCAAAAAGACAGCT
Found at i:15984141 original size:9 final size:9
Alignment explanation
Indices: 15984127--15984151 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
15984117 AGGTTTTATT
15984127 AAATAAATA
1 AAATAAATA
15984136 AAATAAATA
1 AAATAAATA
15984145 AAATAAA
1 AAATAAA
15984152 AATTATACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAATAAATA
Found at i:15984788 original size:42 final size:40
Alignment explanation
Indices: 15984754--15984855 Score: 109
Period size: 39 Copynumber: 2.5 Consensus size: 40
15984744 TAAAAATGAG
15984754 ATAAAATAAAATAAAGATAAATAGATAAATAATAAGATAAAA
1 ATAAAAT-AAATAAAGATAAATAGATAAATAATAA-ATAAAA
* * *
15984796 ATAAGATAAATAAATATAAATA-AT-AATAATAAATACAA
1 ATAAAATAAATAAAGATAAATAGATAAATAATAAATAAAA
* *
15984834 TTATAAATAAATATAAAATAAA
1 ATA-AAATAAATA-AAGATAAA
15984856 ATAAAATTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
38 7 0.13
39 16 0.31
40 9 0.17
41 14 0.27
42 6 0.12
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (40 bp):
ATAAAATAAATAAAGATAAATAGATAAATAATAAATAAAA
Found at i:15984792 original size:20 final size:19
Alignment explanation
Indices: 15984733--15984843 Score: 76
Period size: 18 Copynumber: 5.9 Consensus size: 19
15984723 ATTTTTTATA
*
15984733 AAGATAAACAATAAA-AAT
1 AAGATAAATAATAAATAAT
*
15984751 GAGAT-AA-AAT-AA-AAT
1 AAGATAAATAATAAATAAT
15984766 AAAGATAAATAGATAAATAAT
1 -AAGATAAATA-ATAAATAAT
15984787 AAGATAAA-AATAAGATAAAT
1 AAGATAAATAATAA-AT-AAT
*
15984807 AAATATAAATAAT-AATAAT
1 -AAGATAAATAATAAATAAT
*
15984826 AA-ATACAATTATAAATAA
1 AAGATA-AATAATAAATAA
15984844 ATATAAAATA
Statistics
Matches: 77, Mismatches: 4, Indels: 23
0.74 0.04 0.22
Matches are distributed among these distances:
15 5 0.06
16 7 0.09
17 7 0.09
18 16 0.21
19 13 0.17
20 15 0.19
21 11 0.14
22 3 0.04
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.23
Consensus pattern (19 bp):
AAGATAAATAATAAATAAT
Found at i:15984803 original size:47 final size:50
Alignment explanation
Indices: 15984742--15984862 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 50
15984732 AAAGATAAAC
* * *
15984742 AATAAAAATGAGATAAAATAAAATAAA-GAT-A-AATAGATA-AATAATA
1 AATAAAAATAAGATAAAATAAAATAAATAATAATAATAAATACAATAATA
*
15984788 AGATAAAAATAAGAT-AAATAAATATAAATAATAATAATAAATACAATTATA
1 A-ATAAAAATAAGATAAAATAAA-ATAAATAATAATAATAAATACAATAATA
* *
15984839 AATAAATATAAAATAAAATAAAAT
1 AATAAAAATAAGATAAAATAAAAT
15984863 TAAAAAAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
46 8 0.13
47 17 0.27
48 2 0.03
49 1 0.02
50 20 0.32
51 14 0.23
ACGTcount: A:0.69, C:0.01, G:0.05, T:0.25
Consensus pattern (50 bp):
AATAAAAATAAGATAAAATAAAATAAATAATAATAATAAATACAATAATA
Found at i:15984866 original size:6 final size:5
Alignment explanation
Indices: 15984754--15984871 Score: 57
Period size: 5 Copynumber: 22.4 Consensus size: 5
15984744 TAAAAATGAG
* * *
15984754 ATAAA ATAAA ATAAA GAT-AA ATAGATA A-ATA ATAAG ATAAAA ATAAG
1 ATAAA ATAAA ATAAA -ATAAA ATA-A-A ATAAA ATAAA AT-AAA ATAAA
*
15984801 AT-AA AT-AA ATATAA ATAATA ATAATAA ATACAA TTATAA ATAAA TATAAA
1 ATAAA ATAAA ATA-AA ATAA-A AT-A-AA ATA-AA ATA-AA ATAAA -ATAAA
*
15984851 ATAAA ATAAA ATTAA A-AAA AT
1 ATAAA ATAAA ATAAA ATAAA AT
15984872 TAGACATTCA
Statistics
Matches: 88, Mismatches: 12, Indels: 26
0.70 0.10 0.21
Matches are distributed among these distances:
4 14 0.16
5 37 0.42
6 30 0.34
7 6 0.07
8 1 0.01
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.25
Consensus pattern (5 bp):
ATAAA
Found at i:15984866 original size:11 final size:10
Alignment explanation
Indices: 15984754--15984871 Score: 57
Period size: 11 Copynumber: 11.2 Consensus size: 10
15984744 TAAAAATGAG
15984754 ATAAAATAAA
1 ATAAAATAAA
15984764 ATAAAGAT-AA
1 ATAAA-ATAAA
*
15984774 ATAGATAA-ATA
1 ATA-A-AATAAA
*
15984785 ATAAGATAAAA
1 ATAAAAT-AAA
*
15984796 ATAAGAT-AA
1 ATAAAATAAA
15984805 AT-AAATATAA
1 ATAAAATA-AA
15984815 ATAATAATAATAA
1 ATAA-AAT-A-AA
*
15984828 ATACAATTATAA
1 ATA-AAATA-AA
15984840 ATAAATATAAA
1 ATAAA-ATAAA
15984851 ATAAAATAAA
1 ATAAAATAAA
*
15984861 ATTAAA-AAA
1 ATAAAATAAA
15984870 AT
1 AT
15984872 TAGACATTCA
Statistics
Matches: 88, Mismatches: 7, Indels: 27
0.72 0.06 0.22
Matches are distributed among these distances:
8 3 0.03
9 10 0.11
10 25 0.28
11 27 0.31
12 13 0.15
13 9 0.10
14 1 0.01
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.25
Consensus pattern (10 bp):
ATAAAATAAA
Found at i:15985670 original size:23 final size:22
Alignment explanation
Indices: 15985644--15985690 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
15985634 GATTTTTTTA
15985644 TTATATTTTT-CATAATTTTAGAT
1 TTAT-TTTTTACATAATTTTA-AT
*
15985667 TTATTTTTTACTTAATTTTAAT
1 TTATTTTTTACATAATTTTAAT
15985689 TT
1 TT
15985691 TTTATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (22 bp):
TTATTTTTTACATAATTTTAAT
Found at i:15986246 original size:28 final size:28
Alignment explanation
Indices: 15986188--15986246 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
15986178 TAACCATTTG
**
15986188 CTTTTTATTAATTCTTATTTTTGACTTA
1 CTTTTTATTAATTCTTATTTTTGACAAA
*
15986216 CTTTTTATTAGTTCTTATTTTTGACAAA
1 CTTTTTATTAATTCTTATTTTTGACAAA
15986244 CTT
1 CTT
15986247 CAAGTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.12, G:0.05, T:0.61
Consensus pattern (28 bp):
CTTTTTATTAATTCTTATTTTTGACAAA
Found at i:15986950 original size:21 final size:21
Alignment explanation
Indices: 15986924--15986965 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15986914 CATCATATAA
15986924 GTTTTAAATAAGTCCTAATAC
1 GTTTTAAATAAGTCCTAATAC
*
15986945 GTTTTAAGTAAGTCCTAATAC
1 GTTTTAAATAAGTCCTAATAC
15986966 TCGGCCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (21 bp):
GTTTTAAATAAGTCCTAATAC
Found at i:15987291 original size:2 final size:2
Alignment explanation
Indices: 15987284--15987323 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
15987274 TAGTAAGCGC
15987284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15987324 GGAATCATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15988542 original size:13 final size:13
Alignment explanation
Indices: 15988524--15988549 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15988514 ATAAAACAAG
15988524 TTCATTAAATAAT
1 TTCATTAAATAAT
15988537 TTCATTAAATAAT
1 TTCATTAAATAAT
15988550 CACATCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCATTAAATAAT
Found at i:15995464 original size:2 final size:2
Alignment explanation
Indices: 15995459--15995487 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15995449 AGTATATAAC
15995459 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15995488 CTAGCACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15997538 original size:2 final size:2
Alignment explanation
Indices: 15997531--15997581 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
15997521 CAATGACTCT
15997531 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
15997573 GA GA AA GA G
1 GA GA GA GA G
15997582 GGTTTTGTGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:16004176 original size:11 final size:11
Alignment explanation
Indices: 16004160--16004190 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
16004150 ATATACTATT
16004160 CAATTTGTCTA
1 CAATTTGTCTA
*
16004171 CAATTTATCTA
1 CAATTTGTCTA
16004182 CAATTTGTC
1 CAATTTGTC
16004191 CAGGATTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.45
Consensus pattern (11 bp):
CAATTTGTCTA
Found at i:16006589 original size:15 final size:15
Alignment explanation
Indices: 16006564--16006618 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
16006554 GCTGTGATGA
*
16006564 TTTTT-TTTTTG-GT
1 TTTTTGTTTTTGACT
16006577 TTTATTGTTTTTGACT
1 TTT-TTGTTTTTGACT
16006593 TTTTTGTTTTTAGACT
1 TTTTTGTTTTT-GACT
16006609 ATTTTT-TTTT
1 -TTTTTGTTTT
16006619 AAGTTTCTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
13 3 0.08
14 2 0.06
15 14 0.39
16 12 0.33
17 5 0.14
ACGTcount: A:0.09, C:0.04, G:0.11, T:0.76
Consensus pattern (15 bp):
TTTTTGTTTTTGACT
Found at i:16006595 original size:16 final size:16
Alignment explanation
Indices: 16006576--16006619 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
16006566 TTTTTTTTGG
16006576 TTTTATTGTTTTT-GAC
1 TTTT-TTGTTTTTAGAC
16006592 TTTTTTGTTTTTAGAC
1 TTTTTTGTTTTTAGAC
*
16006608 TATTTT-TTTTTA
1 TTTTTTGTTTTTA
16006620 AGTTTCTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 14 0.54
16 12 0.46
ACGTcount: A:0.14, C:0.05, G:0.09, T:0.73
Consensus pattern (16 bp):
TTTTTTGTTTTTAGAC
Found at i:16008031 original size:166 final size:164
Alignment explanation
Indices: 16007780--16008162 Score: 430
Period size: 166 Copynumber: 2.3 Consensus size: 164
16007770 GAAGAACTAG
* * * * * * * **
16007780 GAGATTATGCTCGAAGGTCTTACAAATCTCGACACCTATGAATACCCTTTTCATTATAGGCTTTA
1 GAGATTATGCTC-AAGGTCTTATAAATCTCAACACCTATGAATGCTCATTTCATTAGAAGCTCCA
* * * * *
16007845 CAACTTTATAATTTTAAAATATTCTGTTTAGAGGACTT-TCAAATCTTTACACTAAAACAAATTC
65 CAACTTTAAAAATTTAAAATATTATGCTCAGAGGACTTAT-AAATCTTTACACTAAAACAAATTC
* * * *
16007909 AACTACG-AAGA-TTAATGAATCTTGCCCAGAAGACTTA
129 AACT-CGAAAAAGTT-ACGAATC-TACCCAGAAAACTTA
*
16007946 GAGATTATGCTCTAAGATCTTATAAATCTCAACACCTATGAATGCTCATTTCATTAGAAGCTCCA
1 GAGATTATGCTC-AAGGTCTTATAAATCTCAACACCTATGAATGCTCATTTCATTAGAAGCTCCA
* **
16008011 CAACTTTAAAAATTTAAAATATTATGCTCAGAGGACTTATAAATCTTTACACTAAAATAGTTTCA
65 CAACTTTAAAAATTTAAAATATTATGCTCAGAGGACTTATAAATCTTTACACTAAAACAAATTCA
* * * *
16008076 GCTTGAAAAAGTTACGAATCTACCTAGAAAATTTA
130 ACTCGAAAAAGTTACGAATCTACCCAGAAAACTTA
* *
16008111 GTGATTATGCTCAGAGGTTTTATAAATCTCAACACCTATGAATGCTCATTTC
1 GAGATTATGCTCA-AGGTCTTATAAATCTCAACACCTATGAATGCTCATTTC
16008163 CATAACTTTA
Statistics
Matches: 183, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
164 1 0.01
165 59 0.32
166 120 0.66
167 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (164 bp):
GAGATTATGCTCAAGGTCTTATAAATCTCAACACCTATGAATGCTCATTTCATTAGAAGCTCCAC
AACTTTAAAAATTTAAAATATTATGCTCAGAGGACTTATAAATCTTTACACTAAAACAAATTCAA
CTCGAAAAAGTTACGAATCTACCCAGAAAACTTA
Found at i:16008557 original size:6 final size:6
Alignment explanation
Indices: 16008546--16008574 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
16008536 CCTTACCAAG
16008546 ATACAA ATACAA ATACAA ATACAA ATACA
1 ATACAA ATACAA ATACAA ATACAA ATACA
16008575 CTCCGCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
ATACAA
Found at i:16010164 original size:22 final size:22
Alignment explanation
Indices: 16010132--16010173 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
16010122 TTCCTTATCT
* *
16010132 TTTTTTTTTTTCTTGTTCTTCC
1 TTTTTTATTTTCTTATTCTTCC
*
16010154 TTTTTTATTTTTTTATTCTT
1 TTTTTTATTTTCTTATTCTT
16010174 TCCCTTTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.81
Consensus pattern (22 bp):
TTTTTTATTTTCTTATTCTTCC
Found at i:16010176 original size:23 final size:23
Alignment explanation
Indices: 16010130--16010173 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
16010120 TTTTCCTTAT
* *
16010130 CTTTTTTTTTTTTCTTGTTCTTC
1 CTTTTTTATTTTTCTTATTCTTC
16010153 CTTTTTTATTTTT-TTATTCTT
1 CTTTTTTATTTTTCTTATTCTT
16010174 TCCCTTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.80
Consensus pattern (23 bp):
CTTTTTTATTTTTCTTATTCTTC
Found at i:16015997 original size:13 final size:13
Alignment explanation
Indices: 16015981--16016017 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
16015971 TTGGCCAAAC
16015981 TTTTTTTTTTTGG
1 TTTTTTTTTTTGG
**
16015994 TTTTTTGGTTTGG
1 TTTTTTTTTTTGG
16016007 TTTTTTTTTTT
1 TTTTTTTTTTT
16016018 TTGTATAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (13 bp):
TTTTTTTTTTTGG
Found at i:16016086 original size:8 final size:7
Alignment explanation
Indices: 16016060--16016138 Score: 63
Period size: 7 Copynumber: 11.0 Consensus size: 7
16016050 GTAATGATTT
16016060 TTTTTTG
1 TTTTTTG
*
16016067 TTTCGTTG
1 TTT-TTTG
*
16016075 TTTTTGG
1 TTTTTTG
16016082 TTTTTTTGG
1 -TTTTTT-G
**
16016091 TTTTAGG
1 TTTTTTG
*
16016098 CTTTTTG
1 TTTTTTG
16016105 TTTTTTG
1 TTTTTTG
16016112 TTTTTTTG
1 -TTTTTTG
16016120 TTTTTT-
1 TTTTTTG
16016126 TTTTTT-
1 TTTTTTG
16016132 TTTTTTG
1 TTTTTTG
16016139 GTTCTATGGC
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
6 12 0.21
7 22 0.39
8 22 0.39
9 1 0.02
ACGTcount: A:0.01, C:0.03, G:0.16, T:0.80
Consensus pattern (7 bp):
TTTTTTG
Found at i:16016103 original size:1 final size:1
Alignment explanation
Indices: 16016099--16016137 Score: 51
Period size: 1 Copynumber: 39.0 Consensus size: 1
16016089 GGTTTTAGGC
* * *
16016099 TTTTTGTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16016138 GGTTCTATGG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (1 bp):
T
Found at i:16021248 original size:31 final size:31
Alignment explanation
Indices: 16021169--16021357 Score: 105
Period size: 31 Copynumber: 6.1 Consensus size: 31
16021159 AGTTTAGTTG
* * * *
16021169 GCATTGATAAGATTTAAACTCATTTTAGT-TG
1 GCATTGATGAGATTTAAGCCCATTTTA-TCTA
* *
16021200 GCACTAATGAGATTTAAGCCCATTTTATCTA
1 GCATTGATGAGATTTAAGCCCATTTTATCTA
* ** *
16021231 GCATTGATGAGATTTAAGCGCAGCTTACCTA
1 GCATTGATGAGATTTAAGCCCATTTTATCTA
* * * * *
16021262 GCAGAT-ATGAGATTCAAGCCTAGTTTAGCTA
1 GCA-TTGATGAGATTTAAGCCCATTTTATCTA
* * * * * *
16021293 GCATTAATAAGATTTAAACCTAGTTTTGT-TG
1 GCATTGATGAGATTTAAGCCCA-TTTTATCTA
** * *
16021324 GCACCGATGAGATTTAAGCCCATTCTAGCTA
1 GCATTGATGAGATTTAAGCCCATTTTATCTA
16021355 GCA
1 GCA
16021358 CATAGATTTG
Statistics
Matches: 117, Mismatches: 36, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
30 5 0.04
31 108 0.92
32 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (31 bp):
GCATTGATGAGATTTAAGCCCATTTTATCTA
Found at i:16021334 original size:62 final size:62
Alignment explanation
Indices: 16021119--16021357 Score: 218
Period size: 62 Copynumber: 3.9 Consensus size: 62
16021109 AATCGATCAC
* * * * *
16021119 ATTTAAACTTAGTTTAGTTGGCACCAATGA-AATTAAGCCTAGTTTAGTTGGCATTGATAAG
1 ATTTAAACCTAGTTTAGTTGGCACCAATGAGATTTAAGCCCAGTTTAGCTAGCATTGATAAG
* * * * *
16021180 ATTTAAA-CTCATTTTAGTTGGCACTAATGAGATTTAAGCCCATTTTATCTAGCATTGATGAG
1 ATTTAAACCT-AGTTTAGTTGGCACCAATGAGATTTAAGCCCAGTTTAGCTAGCATTGATAAG
* * ** * * * * *
16021242 ATTTAAGCGC-AGCTTACCTAGCA-GATATGAGATTCAAGCCTAGTTTAGCTAGCATTAATAAG
1 ATTTAAAC-CTAGTTTAGTTGGCACCA-ATGAGATTTAAGCCCAGTTTAGCTAGCATTGATAAG
* *
16021304 ATTTAAACCTAGTTTTGTTGGCACCGATGAGATTTAAGCCCA-TTCTAGCTAGCA
1 ATTTAAACCTAGTTTAGTTGGCACCAATGAGATTTAAGCCCAGTT-TAGCTAGCA
16021358 CATAGATTTG
Statistics
Matches: 137, Mismatches: 33, Indels: 15
0.74 0.18 0.08
Matches are distributed among these distances:
60 1 0.01
61 29 0.21
62 106 0.77
64 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (62 bp):
ATTTAAACCTAGTTTAGTTGGCACCAATGAGATTTAAGCCCAGTTTAGCTAGCATTGATAAG
Found at i:16021473 original size:49 final size:48
Alignment explanation
Indices: 16021418--16021567 Score: 149
Period size: 49 Copynumber: 3.0 Consensus size: 48
16021408 TCTTTAGCTA
*
16021418 TTGTTTAGGATGAACTTTTTCAAAATGAAATTTTAAAAGTTGTTTAGCC
1 TTGTTTAGGAAGAACTTTTTCAAAATGAAATTTT-AAAGTTGTTTAGCC
* * * * * * *
16021467 TTGTTTAGAAACAACTTTTTCGAGAT-AAGATTTTTAAGTTGCTTGGCC
1 TTGTTTAGGAAGAACTTTTTCAAAATGAA-ATTTTAAAGTTGTTTAGCC
* * *
16021515 TCTGTTTAGGAAGAGCTTTTTCCAAAATGAGATTTGTAAAGTAGTTTAGCC
1 T-TGTTTAGGAAGAACTTTTT-CAAAATGAAATTT-TAAAGTTGTTTAGCC
16021566 TT
1 TT
16021568 TTGTAGACAC
Statistics
Matches: 78, Mismatches: 18, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
48 14 0.18
49 42 0.54
50 9 0.12
51 13 0.17
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (48 bp):
TTGTTTAGGAAGAACTTTTTCAAAATGAAATTTTAAAGTTGTTTAGCC
Found at i:16021635 original size:3 final size:3
Alignment explanation
Indices: 16021629--16021657 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
16021619 AATAATTTTT
16021629 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
16021658 TTTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:16021707 original size:18 final size:20
Alignment explanation
Indices: 16021629--16021707 Score: 74
Period size: 22 Copynumber: 4.0 Consensus size: 20
16021619 AATAATTTTT
*
16021629 ATAATAATAA-TAAT-AATA
1 ATAATAATAATTAATAAAAA
**
16021647 ATAATAATAATTTTTTAAAAA
1 ATAATAATAA-TTAATAAAAA
*
16021668 ATAATTATTAATTATATAAAAA
1 ATAA-TAATAATTA-ATAAAAA
16021690 ATAATAATAA-TAATAAAA
1 ATAATAATAATTAATAAAA
16021708 CAAAACAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
18 10 0.20
19 6 0.12
20 4 0.08
21 14 0.29
22 15 0.31
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
ATAATAATAATTAATAAAAA
Found at i:16021733 original size:9 final size:9
Alignment explanation
Indices: 16021683--16021749 Score: 62
Period size: 9 Copynumber: 7.1 Consensus size: 9
16021673 TATTAATTAT
16021683 ATAAAAAATA
1 ATAAAAAA-A
* *
16021693 ATAATAATA
1 ATAAAAAAA
16021702 ATAAAACAAA
1 ATAAAA-AAA
*
16021712 ACAAAATAAA
1 ATAAAA-AAA
16021722 ATAAAAAAA
1 ATAAAAAAA
*
16021731 ATAAAAAAG
1 ATAAAAAAA
*
16021740 AGAAAAAAA
1 ATAAAAAAA
16021749 A
1 A
16021750 ACAAAAAAGT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
9 25 0.54
10 21 0.46
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.13
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:16023238 original size:17 final size:16
Alignment explanation
Indices: 16023218--16023287 Score: 79
Period size: 16 Copynumber: 4.2 Consensus size: 16
16023208 CTAAGTTTTT
*
16023218 AAAACCCCTAAAAATTC
1 AAAACCCCTTAAAA-TC
16023235 AAAATCCCC-TAAAATTC
1 AAAA-CCCCTTAAAA-TC
*
16023252 AAAACCTCTTAAAATC
1 AAAACCCCTTAAAATC
*
16023268 AAAACCTCTTAAAATC
1 AAAACCCCTTAAAATC
16023284 AAAA
1 AAAA
16023288 TCTCCTAACA
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
16 25 0.51
17 20 0.41
18 4 0.08
ACGTcount: A:0.53, C:0.26, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAACCCCTTAAAATC
Found at i:16034704 original size:8 final size:9
Alignment explanation
Indices: 16034652--16034716 Score: 93
Period size: 9 Copynumber: 7.7 Consensus size: 9
16034642 AAAAAAAAGA
16034652 AAAAAATAT
1 AAAAAATAT
16034661 -AAAAATAT
1 AAAAAATAT
16034669 --AAAATAT
1 AAAAAATAT
16034676 AAAAAATAT
1 AAAAAATAT
16034685 AAAAAATAT
1 AAAAAATAT
16034694 AAAAAAT-T
1 AAAAAATAT
*
16034702 AAAAAAAAT
1 AAAAAATAT
16034711 AAAAAA
1 AAAAAA
16034717 AAATGAGAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
7 7 0.13
8 15 0.29
9 30 0.58
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAAAATAT
Found at i:16034717 original size:8 final size:8
Alignment explanation
Indices: 16034643--16034717 Score: 78
Period size: 9 Copynumber: 8.9 Consensus size: 8
16034633 ATTTTGCTTA
*
16034643 AAAAAAAG
1 AAAAAAAT
16034651 AAAAAAAT
1 AAAAAAAT
*
16034659 ATAAAAAT
1 AAAAAAAT
*
16034667 ATAAAATAT
1 A-AAAAAAT
16034676 AAAAAATAT
1 AAAAAA-AT
16034685 AAAAAATAT
1 AAAAAA-AT
*
16034694 AAAAAATT
1 AAAAAAAT
16034702 AAAAAAAAT
1 -AAAAAAAT
16034711 AAAAAAA
1 AAAAAAA
16034718 AATGAGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
8 27 0.47
9 30 0.53
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.17
Consensus pattern (8 bp):
AAAAAAAT
Found at i:16036060 original size:38 final size:36
Alignment explanation
Indices: 16035941--16036181 Score: 122
Period size: 35 Copynumber: 6.7 Consensus size: 36
16035931 CTAGTTGTAT
16035941 TTAATCTTTGACTCGTGGTTTAATCCCGATCATTTCA
1 TTAATCTTTGACTCGTGGTTTAAT-CCGATCATTTCA
** * * * * * *
16035978 -T--TCTCCGACTTGCGGTTCAGTCCCAGTCA--TCT
1 TTAATCTTTGACTCGTGGTTTAATCCGA-TCATTTCA
* *
16036010 TTAATCTTTGACTGGTAGTTTAATCTCGATCATTTCA
1 TTAATCTTTGACTCGTGGTTTAATC-CGATCATTTCA
* * * * *
16036047 TTAATTTTATGACTTGTGGTTTAGTCCCAGTCA--TCT
1 TTAATCTT-TGACTCGTGGTTTAATCCGA-TCATTTCA
*
16036083 TTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTCA
1 TTAATCTTTGACTCGTGGTTTAAT-CCGATCATTTCA
* * * * * * *
16036120 TTAATTTTTTTAACTTGTGATTTAGTCCCGGTCA--TCT
1 TTAA--TCTTTGACTCGTGGTTTAAT-CCGATCATTTCA
*
16036157 TTAATCTTTGGCTCGTGGTTTAATC
1 TTAATCTTTGACTCGTGGTTTAATC
16036182 TTGATCTCTT
Statistics
Matches: 149, Mismatches: 41, Indels: 31
0.67 0.19 0.14
Matches are distributed among these distances:
32 2 0.01
33 4 0.03
34 18 0.12
35 48 0.32
36 14 0.09
37 23 0.15
38 17 0.11
39 23 0.15
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (36 bp):
TTAATCTTTGACTCGTGGTTTAATCCGATCATTTCA
Found at i:16036073 original size:142 final size:141
Alignment explanation
Indices: 16035843--16036121 Score: 371
Period size: 142 Copynumber: 2.0 Consensus size: 141
16035833 TTAATTTTTT
* *
16035843 GACTTGCGATTCAATCTCAGTCATCTTTATCCTTTGACTCGTGGTTAATCTCGGTCATTTCATTA
1 GACTTGCGATTCAATCCCAGTCATCTTTATCCTTTGACTCGTGGTTAATCTCGATCATTTCATTA
* * **
16035908 ATTGCCCGACTTACGGTTCAGTCCTAGTTGTATTTAATCTTTGACTCGTGGTTTAATCCCGATCA
66 ATTGCACGACTTACGGTTCAGTCCCAGTCATATTTAATCTTTGACTCGTGGTTTAATCCCGATCA
16035973 TTTCATTCTCC
131 TTTCATTCTCC
* * * *
16035984 GACTTGCGGTTCAGTCCCAGTCATCTTTAAT-CTTTGACTGGTAGTTTAATCTCGATCATTTCAT
1 GACTTGCGATTCAATCCCAGTCATCTTT-ATCCTTTGACTCGT-GGTTAATCTCGATCATTTCAT
** * ** * * *
16036048 TAATTTTATGACTTGTGGTTTAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGT
64 TAATTGCACGACTTACGGTTCAGTCCCAGTCATATTTAATCTTTGACTCGTGGTTTAATCCCGAT
16036113 CATTTCATT
129 CATTTCATT
16036122 AATTTTTTTA
Statistics
Matches: 118, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
141 35 0.30
142 83 0.70
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.42
Consensus pattern (141 bp):
GACTTGCGATTCAATCCCAGTCATCTTTATCCTTTGACTCGTGGTTAATCTCGATCATTTCATTA
ATTGCACGACTTACGGTTCAGTCCCAGTCATATTTAATCTTTGACTCGTGGTTTAATCCCGATCA
TTTCATTCTCC
Found at i:16036091 original size:73 final size:73
Alignment explanation
Indices: 16035799--16036187 Score: 396
Period size: 73 Copynumber: 5.4 Consensus size: 73
16035789 AATTTCAGTC
* * * * * * *
16035799 ATCTTTAACTCGCGATTTAATC-CTGATCATTTCATTAATTTTTTGACTTGCGATTCAATCTCAG
1 ATCTTTGACTCGTGGTTTAATCTC-GATCATTTCATTAATTTTCTGACTTGCGGTTCAGTCCCAG
16035863 TCATCTTT-
65 TCATCTTTA
* ** * * *
16035871 ATCCTTTGACTCGTGG-TTAATCTCGGTCATTTCATTAATTGCCCGACTTACGGTTCAGTCCTAG
1 AT-CTTTGACTCGTGGTTTAATCTCGATCATTTCATTAATTTTCTGACTTGCGGTTCAGTCCCAG
** *
16035935 TTGTATTTA
65 TCATCTTTA
* * *
16035944 ATCTTTGACTCGTGGTTTAATCCCGATCATTTC----ATTCTCCGACTTGCGGTTCAGTCCCAGT
1 ATCTTTGACTCGTGGTTTAATCTCGATCATTTCATTAATTTTCTGACTTGCGGTTCAGTCCCAGT
16036005 CATCTTTA
66 CATCTTTA
* * * * *
16036013 ATCTTTGACTGGTAGTTTAATCTCGATCATTTCATTAATTTTATGACTTGTGGTTTAGTCCCAGT
1 ATCTTTGACTCGTGGTTTAATCTCGATCATTTCATTAATTTTCTGACTTGCGGTTCAGTCCCAGT
16036078 CATCTTTA
66 CATCTTTA
* * * * * * * *
16036086 ATCTTTGACTCGTGGTTTAATCCCGGTCATTTCATTAATTTTTTTAACTTGTGATTTAGTCCCGG
1 ATCTTTGACTCGTGGTTTAATCTCGATCATTTCATTAA-TTTTCTGACTTGCGGTTCAGTCCCAG
16036151 TCATCTTTA
65 TCATCTTTA
* *
16036160 ATCTTTGGCTCGTGGTTTAATCTTGATC
1 ATCTTTGACTCGTGGTTTAATCTCGATC
16036188 TCTTTATTTT
Statistics
Matches: 263, Mismatches: 45, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
69 59 0.22
72 56 0.21
73 93 0.35
74 55 0.21
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (73 bp):
ATCTTTGACTCGTGGTTTAATCTCGATCATTTCATTAATTTTCTGACTTGCGGTTCAGTCCCAGT
CATCTTTA
Found at i:16036149 original size:39 final size:38
Alignment explanation
Indices: 16036016--16036154 Score: 131
Period size: 39 Copynumber: 3.7 Consensus size: 38
16036006 ATCTTTAATC
* * * * *
16036016 TTTGACTGGTAGTTTAATCTCGATCATTTCATTAATTT
1 TTTGACTTGTGGTTTAGTCCCGGTCATTTCATTAATTT
* * * *
16036054 TATGACTTGTGGTTTAGTCCCAGTCA--TCTTTAA-TC
1 TTTGACTTGTGGTTTAGTCCCGGTCATTTCATTAATTT
* *
16036089 TTTGACTCGTGGTTTAATCCCGGTCATTTCATTAATTTT
1 TTTGACTTGTGGTTTAGTCCCGGTCATTTCATTAA-TTT
* *
16036128 TTTAACTTGTGATTTAGTCCCGGTCAT
1 TTTGACTTGTGGTTTAGTCCCGGTCAT
16036155 CTTTAATCTT
Statistics
Matches: 78, Mismatches: 19, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
35 23 0.29
36 6 0.08
37 6 0.08
38 19 0.24
39 24 0.31
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.47
Consensus pattern (38 bp):
TTTGACTTGTGGTTTAGTCCCGGTCATTTCATTAATTT
Found at i:16036192 original size:34 final size:34
Alignment explanation
Indices: 16035940--16036533 Score: 177
Period size: 34 Copynumber: 17.2 Consensus size: 34
16035930 CCTAGTTGTA
*
16035940 TTTAATCTTTGACTCGTGGTTTAATCCCGATCAT-
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATC-TC
* * ** * * * * *
16035974 TTCATTCTCCGACTTGCGGTTCAGTC-CCAGTCATC
1 TTTAATCTTTGACTCGTGGTTTAATCTCGA-TC-TC
* *
16036009 TTTAATCTTTGACTGGTAGTTTAATCTCGATCATTTC
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATC---TC
* * * * *
16036046 ATTAATTTTATGACTTGTGGTTTAGTC-CCAGTCATC
1 TTTAATCTT-TGACTCGTGGTTTAATCTCGA-TC-TC
* *
16036082 TTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTC
1 TTTAATCTTTGACTCGTGGTTTAATCTC-G--ATCTC
* * * * * * * *
16036119 ATTAATTTTTTTAACTTGTGATTTAGTCCCGGTCATC
1 TTTAA--TCTTTGACTCGTGGTTTAATCTCGATC-TC
* *
16036156 TTTAATCTTTGGCTCGTGGTTTAATCTTGATCTC
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATCTC
* * ** * *
16036190 TTT-ATTTTTCGATTCACGGTTCAATCCCGATCTC
1 TTTAATCTTT-GACTCGTGGTTTAATCTCGATCTC
** * * *
16036224 TTTAAT-TTAAAATCGTAGTTTAATCTCGAT-TG
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATCTC
* * *
16036256 TTGTTATTTTTGACTCGTGGTTTAATCCCGATCTC
1 TT-TAATCTTTGACTCGTGGTTTAATCTCGATCTC
* * *
16036291 TTTATTCTTTGATTCGTGATTTAATCTCGATCTC
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATCTC
*** * **** *
16036325 TTTAAT-TCAAAGTTACAGTTTAATCTCGAT-TGAA
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATCT--C
* * * *
16036359 GTT-ATCCTCTAACTCATGGTTTAATGC-CGATCTC
1 TTTAAT-CTTTGACTCGTGGTTTAAT-CTCGATCTC
* * ** * * *
16036393 TTTATTCTTTGATTCACGATTCAATCCCGATCTC
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATCTC
** * * *
16036427 TTTAAT-TTAAAATCGTAGTTTAATCTCGAT-TG
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATCTC
* * *
16036459 TTGTTATTTTTGACTCGTGGTTTAATCTCAATCTC
1 TT-TAATCTTTGACTCGTGGTTTAATCTCGATCTC
* * * * * * *
16036494 TTTATTCTCTGATTCGTGATTCAATCCCAATCTC
1 TTTAATCTTTGACTCGTGGTTTAATCTCGATCTC
16036528 TTTAAT
1 TTTAAT
16036534 TCAAAGTCGC
Statistics
Matches: 396, Mismatches: 134, Indels: 60
0.67 0.23 0.10
Matches are distributed among these distances:
32 7 0.02
33 60 0.15
34 176 0.44
35 78 0.20
36 15 0.04
37 23 0.06
38 18 0.05
39 19 0.05
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.46
Consensus pattern (34 bp):
TTTAATCTTTGACTCGTGGTTTAATCTCGATCTC
Found at i:16036277 original size:101 final size:102
Alignment explanation
Indices: 16036162--16036587 Score: 536
Period size: 101 Copynumber: 4.2 Consensus size: 102
16036152 CATCTTTAAT
* * *
16036162 CTTTGGCTCGTGGTTTAATCTTGATCTCTTTATT-TTTCGATTCACGGTTCAATCCCGATCTCTT
1 CTTTGACTCGTGGTTTAATCTCGATCTCTTTATTCTTT-GATTCACGATTCAATCCCGATCTCTT
* *
16036226 TAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTAT-
65 TAATTCAAAATCGCAGTTTAATCTCGATTGTTGTTATC
* * ** * *
16036263 TTTTGACTCGTGGTTTAATCCCGATCTCTTTATTCTTTGATTCGTGATTTAATCTCGATCTCTTT
1 CTTTGACTCGTGGTTTAATCTCGATCTCTTTATTCTTTGATTCACGATTCAATCCCGATCTCTTT
* ** **
16036328 AATTCAAAGTTACAGTTTAATCTCGATTGAAGTTATC
66 AATTCAAAATCGCAGTTTAATCTCGATTGTTGTTATC
* * *
16036365 CTCTAACTCATGGTTTAATGC-CGATCTCTTTATTCTTTGATTCACGATTCAATCCCGATCTCTT
1 CTTTGACTCGTGGTTTAAT-CTCGATCTCTTTATTCTTTGATTCACGATTCAATCCCGATCTCTT
* *
16036429 TAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTAT-
65 TAATTCAAAATCGCAGTTTAATCTCGATTGTTGTTATC
* * * ** *
16036466 TTTTGACTCGTGGTTTAATCTCAATCTCTTTATTCTCTGATTCGTGATTCAATCCCAATCTCTTT
1 CTTTGACTCGTGGTTTAATCTCGATCTCTTTATTCTTTGATTCACGATTCAATCCCGATCTCTTT
*
16036531 AATTCAAAGTCGCAGTTTAATCTCGATTGTTGTTATC
66 AATTCAAAATCGCAGTTTAATCTCGATTGTTGTTATC
* *
16036568 CTCTAACTCGTGGTTTAATC
1 CTTTGACTCGTGGTTTAATC
16036588 CCGGTCTCCT
Statistics
Matches: 274, Mismatches: 46, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
100 1 0.00
101 168 0.61
102 104 0.38
103 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (102 bp):
CTTTGACTCGTGGTTTAATCTCGATCTCTTTATTCTTTGATTCACGATTCAATCCCGATCTCTTT
AATTCAAAATCGCAGTTTAATCTCGATTGTTGTTATC
Found at i:16036418 original size:203 final size:203
Alignment explanation
Indices: 16036172--16036595 Score: 688
Period size: 203 Copynumber: 2.1 Consensus size: 203
16036162 CTTTGGCTCG
** *
16036172 TGGTTTAATCTTGATCTCTTTATTTTTCGATTCACGGTTCAATCCCGATCTCTTTAATTTAAAAT
1 TGGTTTAATCCCGATCTCTTTATTTTTCGATTCACGATTCAATCCCGATCTCTTTAATTTAAAAT
* *
16036237 CGTAGTTTAATCTCGATTGTTGTTATTTTTGACTCGTGGTTTAATCCCGATCTCTTTATTCTTTG
66 CGTAGTTTAATCTCGATTGTTGTTATTTTTGACTCGTGGTTTAATCCCAATCTCTTTATTCTCTG
* * * *
16036302 ATTCGTGATTTAATCTCGATCTCTTTAATTCAAAGTTACAGTTTAATCTCGATTGAAGTTATCCT
131 ATTCGTGATTCAATCCCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGAAGTTATCCT
16036367 CTAACTCA
196 CTAACTCA
*
16036375 TGGTTTAATGCCGATCTCTTTATTCTTT-GATTCACGATTCAATCCCGATCTCTTTAATTTAAAA
1 TGGTTTAATCCCGATCTCTTTATT-TTTCGATTCACGATTCAATCCCGATCTCTTTAATTTAAAA
*
16036439 TCGTAGTTTAATCTCGATTGTTGTTATTTTTGACTCGTGGTTTAATCTCAATCTCTTTATTCTCT
65 TCGTAGTTTAATCTCGATTGTTGTTATTTTTGACTCGTGGTTTAATCCCAATCTCTTTATTCTCT
* **
16036504 GATTCGTGATTCAATCCCAATCTCTTTAATTCAAAGTCGCAGTTTAATCTCGATTGTTGTTATCC
130 GATTCGTGATTCAATCCCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGAAGTTATCC
*
16036569 TCTAACTCG
195 TCTAACTCA
*
16036578 TGGTTTAATCCCGGTCTC
1 TGGTTTAATCCCGATCTC
16036596 CTCCTTTCTG
Statistics
Matches: 203, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
203 200 0.99
204 3 0.01
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.45
Consensus pattern (203 bp):
TGGTTTAATCCCGATCTCTTTATTTTTCGATTCACGATTCAATCCCGATCTCTTTAATTTAAAAT
CGTAGTTTAATCTCGATTGTTGTTATTTTTGACTCGTGGTTTAATCCCAATCTCTTTATTCTCTG
ATTCGTGATTCAATCCCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGAAGTTATCCT
CTAACTCA
Found at i:16036948 original size:21 final size:21
Alignment explanation
Indices: 16036922--16037006 Score: 61
Period size: 20 Copynumber: 4.0 Consensus size: 21
16036912 TACTGTTTTT
* *
16036922 ATTTTAAT-ATAATATTAATA
1 ATTTTTATAATAATAATAATA
16036942 ATTTTTATAATAATAATAAT-
1 ATTTTTATAATAATAATAATA
* *
16036962 ATTTTTTTAA-AA-AATAATT
1 ATTTTTATAATAATAATAATA
*
16036981 ATTAATTATATAAAAAATAATAATA
1 ATT--TT-TAT-AATAATAATAATA
16037006 A
1 A
16037007 AACAAAACAA
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
18 6 0.12
19 5 0.10
20 16 0.31
21 12 0.23
22 2 0.04
23 2 0.04
24 2 0.04
25 7 0.13
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTTTTATAATAATAATAATA
Found at i:16036952 original size:18 final size:19
Alignment explanation
Indices: 16036929--16036966 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
16036919 TTTATTTTAA
*
16036929 TATAATATTAATAAT-TTT
1 TATAATAATAATAATATTT
16036947 TATAATAATAATAATATTT
1 TATAATAATAATAATATTT
16036966 T
1 T
16036967 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATAATAATAATAATATTT
Found at i:16036977 original size:18 final size:18
Alignment explanation
Indices: 16036937--16037002 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 18
16036927 AATATAATAT
16036937 TAATAATTTTTATAATAATAA
1 TAAT-ATTTTTATAA-AA-AA
*
16036958 TAATATTTTTTTAAAAAA
1 TAATATTTTTATAAAAAA
16036976 TAATTATTAATTATATAAAAAA
1 TAA-TATT--TT-TATAAAAAA
16036998 TAATA
1 TAATA
16037003 ATAAAACAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 5 0.13
19 6 0.15
20 9 0.23
21 8 0.21
22 11 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATATTTTTATAAAAAA
Found at i:16037112 original size:22 final size:24
Alignment explanation
Indices: 16037078--16037124 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
16037068 CTGTCGCCCT
*
16037078 CGACCAGCCACCCTA-CAG-CCAC
1 CGACCAACCACCCTACCAGTCCAC
*
16037100 CGACCAACTACCCTACCAGTCCAC
1 CGACCAACCACCCTACCAGTCCAC
16037124 C
1 C
16037125 TACAGCCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 3 0.14
24 5 0.24
ACGTcount: A:0.28, C:0.53, G:0.11, T:0.09
Consensus pattern (24 bp):
CGACCAACCACCCTACCAGTCCAC
Found at i:16038543 original size:18 final size:16
Alignment explanation
Indices: 16038516--16038571 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
16038506 CTAAGTTTTT
16038516 AAAACCCCTAAAAATTC
1 AAAACCCCT-AAAATTC
*
16038533 AAAATCCCCTAAGATTC
1 AAAA-CCCCTAAAATTC
*
16038550 AAAACCTCTTAAAA-TC
1 AAAACC-CCTAAAATTC
16038566 AAAACC
1 AAAACC
16038572 TCTTAACAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 10 0.29
17 19 0.56
18 5 0.15
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.20
Consensus pattern (16 bp):
AAAACCCCTAAAATTC
Found at i:16038569 original size:16 final size:17
Alignment explanation
Indices: 16038548--16038582 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
16038538 CCCCTAAGAT
16038548 TCAAAACCTCTTAA-AA
1 TCAAAACCTCTTAACAA
16038564 TCAAAACCTCTTAACAA
1 TCAAAACCTCTTAACAA
16038581 TC
1 TC
16038583 CTAAGGACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.26
Consensus pattern (17 bp):
TCAAAACCTCTTAACAA
Found at i:16046442 original size:797 final size:797
Alignment explanation
Indices: 16044907--16048893 Score: 7546
Period size: 797 Copynumber: 5.0 Consensus size: 797
16044897 ACTTGAAAAT
*
16044907 ACTTTAAAATTGTATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
1 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
16044972 AAAACTCTATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
66 AAAACTCTATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
16045037 TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
131 TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
16045102 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
196 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
16045167 ATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCAT
261 ATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCAT
16045232 AATATATAGATACTTTTATATATAAAGAAAAATCCCTATTTCCTTCATTATTGTCATAATATATA
326 AATATATAGATACTTTTATATATAAAG--AAATCCCTATTTCCTTCATTATTGTCATAATATATA
*
16045297 GATCCATAAACTAGTCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAA
389 GATCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAA
*
16045362 TTAGCTACCTAATTAAATATATCTTATTTTAAAAAGAAATTCTAAGCTAAACTTAGGTATCTTTA
454 TTAGCTACCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTA
16045427 AAAAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGT
519 AAAAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGT
16045492 TATAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTA
584 TATAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTA
*
16045557 AATATGTTCGTAATTTTACCAAGTAAATTTAATGATGGAAATTAGTTTTAAAATTACTCCAATCA
649 AATATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCA
16045622 TTTGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCT
714 TTTGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCT
*
16045687 AAAGAAGCTCCATCTTCAA
779 AAAGAGGCTCCATCTTCAA
16045706 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
1 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
16045771 AAAACTCTATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
66 AAAACTCTATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
16045836 TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
131 TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
16045901 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
196 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
16045966 ATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCAT
261 ATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCAT
*
16046031 AATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTTTCATAATATATAGA
326 AATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTGTCATAATATATAGA
*
16046096 TCCATAAACTAATCATTAAACTTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAATT
391 TCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAATT
16046161 AGCTACCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAAA
456 AGCTACCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAAA
* *
16046226 AAGTAAATTTTAATTCATGAAACTAGAATTAGATTCAGGAGTATGGTTACACGTAAAGAAGGTTA
521 AAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGTTA
* *
16046291 TAGCACCCTCACAATGTCTATTGAAAGATAATACTAGTTTGATTTCATATTATCTAAGCCTTAAA
586 TAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTAAA
*
16046356 TATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACACCAATCATT
651 TATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCATT
16046421 TGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTAA
716 TGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTAA
*
16046486 AGAAGCTCCATCTTCAA
781 AGAGGCTCCATCTTCAA
16046503 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
1 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
*
16046568 AAAACTCTTTATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
66 AAAACTCTATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
* * *
16046633 TAAAATTGTTTTCTATTTAAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
131 TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
16046698 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
196 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
*
16046763 ATTCATATTTAAGTAAATAGTTGTTAGGGCCAATCAATAACTTTTCATTATAAATGCAAGACCAT
261 ATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCAT
16046828 AATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTGTCATAATATATAGA
326 AATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTGTCATAATATATAGA
*
16046893 TCCATAAACTAGTCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAATT
391 TCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAATT
*
16046958 AGCTATCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAAA
456 AGCTACCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAAA
16047023 AAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGTTA
521 AAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGTTA
16047088 TAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTAAA
586 TAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTAAA
*
16047153 TATGTTCGTAATTTTACCAAGTAAATTTAATGATGGAAATTAGTTTTAAAATTACTCCAATCATT
651 TATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCATT
16047218 TGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTAA
716 TGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTAA
16047283 AGAGGCTCCATCTTCAA
781 AGAGGCTCCATCTTCAA
* *
16047300 ACTTTAAAATTGTATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGCTG
1 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
16047365 AAAACTCGT-TATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGA
66 AAAACTC-TATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGA
16047429 TTTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTC
130 TTTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTC
* *
16047494 GAATTATTAAATCAAATTAAATGGATTTTTGGAATTCGAGACAACTAATTTACCAGCTCTACTCT
195 GAATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCT
*
16047559 CATTCATATTTAGGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCA
260 CATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCA
16047624 TAATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTGTCATAATATATAG
325 TAATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTGTCATAATATATAG
16047689 ATCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAAT
390 ATCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAAT
*
16047754 TAGCTACCTAATTAAATATATTTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAA
455 TAGCTACCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAA
*
16047819 AAAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAAAAGGTT
520 AAAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGTT
* *
16047884 ATAACACCTTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTAA
585 ATAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTAA
16047949 ATATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCAT
650 ATATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCAT
* *
16048014 TTGGTACTAATTTAAAACAATCTTTTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTA
715 TTGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTA
16048079 AAGAGGCTCCATCTTCAA
780 AAGAGGCTCCATCTTCAA
16048097 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
1 ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
*
16048162 AAAACTCTTTATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
66 AAAACTCTATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
16048227 TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
131 TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
*
16048292 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTTTACTCTC
196 AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
*
16048357 ATTCATATTTAAGTAAATAGTTGTTAGGGCCAATCAATAACTTTTCATTATAAATGCAAGACCAT
261 ATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCAT
* *
16048422 AATTTATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTTTCATAATATATAGA
326 AATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTGTCATAATATATAGA
16048487 TCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAATT
391 TCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAATT
* *
16048552 AACTACCTAATTAAATATATCTTATTTTAAAGAGAAATTTTAAGCTAAACTTAGGTATCTTTAAA
456 AGCTACCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAAA
* *
16048617 AAGTAAATTTTAATACATTAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGTTA
521 AAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGTTA
*
16048682 TAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCT-AGCCTTCAA
586 TAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTAAA
16048746 TATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCATT
651 TATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCATT
*
16048811 TGGTAGTAATTTAAAACAATCTTCTCACATCAAGAGTATTCATGGAGACTCATATCTAACTCTAA
716 TGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTAA
16048876 AGAGGCTCCATCTTCAA
781 AGAGGCTCCATCTTCAA
16048893 A
1 A
16048894 TTCATTAACT
Statistics
Matches: 3120, Mismatches: 66, Indels: 7
0.98 0.02 0.00
Matches are distributed among these distances:
796 154 0.05
797 2614 0.84
798 1 0.00
799 351 0.11
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (797 bp):
ACTTTAAAATTATATGTAAGATCTCATTTAGAGGTAGCAATTGGGGGTAAGATAATTACATGTTG
AAAACTCTATATGGCTTATTAAAGTTTAGGTCATTTTTATATCAATCTTTTGAGATCGTTTGGAT
TTAAATTATTTTCTATTTGAGTCAATTTAAATTCAAATTATTTTAGATTAAAGTTAAAACATTCG
AATTATTGAATCAAATTAAATGGATTTTTGGAATTCGGGACAACTAATTTACCAGCTCTACTCTC
ATTCATATTTAAGTAAATAGTTGTTAGGGCAAATCAATAACTTTTCATTATAAATGCAAGACCAT
AATATATAGATACTTTTATATATAAAGAAATCCCTATTTCCTTCATTATTGTCATAATATATAGA
TCCATAAACTAATCATTAAACCTGACTTAGGGAGTCATCACTAATCGTTTTGCTTAGATGCAATT
AGCTACCTAATTAAATATATCTTATTTTAAAGAGAAATTCTAAGCTAAACTTAGGTATCTTTAAA
AAGTAAATTTTAATCCATGAAACTAGAATTAGATCCAGGAGTATGGTTACACGTAAAGAAGGTTA
TAGCACCCTCACAACGTCTATTGAAAGATGATACTAGTTTGATTTCATATTATCTAAGCCTTAAA
TATGTTCGTAATTTTACCAAGTAAATTTAATAATGGAAATTAGTTTTAAAATTACTCCAATCATT
TGGTAGTAATTTAAAACAATCTTCTCACATCAAAAGTATTCATGGAGACTCATATCTAACTCTAA
AGAGGCTCCATCTTCAA
Found at i:16049260 original size:95 final size:95
Alignment explanation
Indices: 16049128--16049308 Score: 226
Period size: 95 Copynumber: 1.9 Consensus size: 95
16049118 ATTTTTATCC
*
16049128 AAAAATTTATTATGAAATTCTCCAATCATTTGATAGAATTCATAATTCCAAAATTTAAAT-C-TC
1 AAAAATTCATTATGAAATTCTCCAATCATTTGATAGAATTCATAATT-CAAAATTTAAATCCTTC
16049191 TAATAATTTGGT-GTGATTGAAAATTTAATTTT
65 -AATAATTTGGTAG-GATTGAAAATTTAATTTT
* * * * * *
16049223 AAAAATTCATTATGAAATTTTTCAAT-AGTTTGGTAGAATTTATAATTCGAGATTTAAATCCTTC
1 AAAAATTCATTATGAAATTCTCCAATCA-TTTGATAGAATTCATAATTCAAAATTTAAATCCTTC
*
16049287 AATCATTTGGTAGGATTGAAAA
65 AATAATTTGGTAGGATTGAAAA
16049309 ATTGCTTTTC
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
94 11 0.15
95 60 0.81
96 3 0.04
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (95 bp):
AAAAATTCATTATGAAATTCTCCAATCATTTGATAGAATTCATAATTCAAAATTTAAATCCTTCA
ATAATTTGGTAGGATTGAAAATTTAATTTT
Found at i:16050664 original size:23 final size:23
Alignment explanation
Indices: 16050516--16050664 Score: 74
Period size: 22 Copynumber: 6.6 Consensus size: 23
16050506 AAAGATGACA
* *
16050516 CCTAAAGGT-TTTAACGATCATG
1 CCTAAAGGTCTTAAAAGATCATG
* * *
16050538 CTTGAAGGTCTTTAAAAGATCATTT
1 CCTAAAGGTC-TTAAAAGATCA-TG
* * *
16050563 CC-AAAAGACTTAAATGATCATG
1 CCTAAAGGTCTTAAAAGATCATG
* * * *
16050585 CTTGAAGGTCTT-ATAGATCATA
1 CCTAAAGGTCTTAAAAGATCATG
* * *
16050607 CCTAAAAGTCTT-TAAGATTATG
1 CCTAAAGGTCTTAAAAGATCATG
* *
16050629 CTTAGAA-GACTTAAAAGATCATG
1 CCTA-AAGGTCTTAAAAGATCATG
*
16050652 CCCAAAGGTCTTA
1 CCTAAAGGTCTTA
16050665 TAACTTTTAA
Statistics
Matches: 88, Mismatches: 32, Indels: 13
0.66 0.24 0.10
Matches are distributed among these distances:
22 40 0.45
23 33 0.38
24 13 0.15
25 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (23 bp):
CCTAAAGGTCTTAAAAGATCATG
Found at i:16056425 original size:14 final size:14
Alignment explanation
Indices: 16056406--16056435 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
16056396 TTGAAAATTT
16056406 ATTTTTTTAAAATA
1 ATTTTTTTAAAATA
*
16056420 ATTTTTTTAAATTA
1 ATTTTTTTAAAATA
16056434 AT
1 AT
16056436 AAAGTTTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTTTTTTAAAATA
Found at i:16057862 original size:26 final size:25
Alignment explanation
Indices: 16057814--16057863 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
16057804 TTATTATGAA
*
16057814 AAATAAAATTTATCTTGAAAAAATT
1 AAATAAAATTTATCGTGAAAAAATT
* *
16057839 AAATTAAATTTGATCGTGATAAAAT
1 AAATAAAATTT-ATCGTGAAAAAAT
16057864 CAAAATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (25 bp):
AAATAAAATTTATCGTGAAAAAATT
Found at i:16059381 original size:13 final size:13
Alignment explanation
Indices: 16059345--16059396 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
16059335 ATATATGTAT
*
16059345 TATATTAA-TAAA
1 TATATTAATTTAA
*
16059357 TTTATT-ATTTAA
1 TATATTAATTTAA
*
16059369 TATTTTAATTTAA
1 TATATTAATTTAA
*
16059382 AATATTAATTTAA
1 TATATTAATTTAA
16059395 TA
1 TA
16059397 AAAATATTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
11 1 0.03
12 12 0.39
13 18 0.58
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATTAATTTAA
Found at i:16068481 original size:4 final size:4
Alignment explanation
Indices: 16068472--16068496 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
16068462 GAAAAAATAA
16068472 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
16068497 TACACAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:16068494 original size:22 final size:22
Alignment explanation
Indices: 16068466--16068508 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
16068456 AAAAAGGAAA
*
16068466 AAATAAAAATAAATAAATAAAT
1 AAATAAAAATAAACAAATAAAT
* *
16068488 AAATAAATATACACAAATAAA
1 AAATAAAAATAAACAAATAAA
16068509 CGCAGTGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (22 bp):
AAATAAAAATAAACAAATAAAT
Found at i:16079491 original size:19 final size:21
Alignment explanation
Indices: 16079454--16079492 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
16079444 AATTAATTAA
16079454 TTAATTCTTATTGTCATTATT
1 TTAATTCTTATTGTCATTATT
*
16079475 TTAATT-TT-TTGTTATTAT
1 TTAATTCTTATTGTCATTAT
16079493 CTACTGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 2 0.12
21 6 0.35
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TTAATTCTTATTGTCATTATT
Found at i:16080227 original size:26 final size:25
Alignment explanation
Indices: 16080162--16080229 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 25
16080152 CATAAAAGAT
* *
16080162 AAAAAATAACATAAAAATCAAAACA
1 AAAAAAAAACATCAAAATCAAAACA
16080187 AAATAAATAAA-ATCAAAATCAAAACA
1 AAA-AAA-AAACATCAAAATCAAAACA
16080213 AAAAAAAAACTATCAAA
1 AAAAAAAAAC-ATCAAA
16080230 TGGGTCGGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
24 3 0.08
25 6 0.16
26 26 0.70
27 2 0.05
ACGTcount: A:0.75, C:0.12, G:0.00, T:0.13
Consensus pattern (25 bp):
AAAAAAAAACATCAAAATCAAAACA
Found at i:16080446 original size:15 final size:15
Alignment explanation
Indices: 16080426--16080455 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16080416 TACCGTGGTA
16080426 ACCCAAATTCTAGTT
1 ACCCAAATTCTAGTT
16080441 ACCCAAATTCTAGTT
1 ACCCAAATTCTAGTT
16080456 GGTTGTTGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
ACCCAAATTCTAGTT
Found at i:16081410 original size:40 final size:40
Alignment explanation
Indices: 16081352--16081476 Score: 146
Period size: 40 Copynumber: 3.1 Consensus size: 40
16081342 TAACTCCTGA
* *
16081352 AAATTTAGAAAGGCTCATCTAACCAAAGGTTATGAAACTTT
1 AAATTTA-AAAAGCTCATCTAACCAAAGGTAATGAAACTTT
*
16081393 AAATTTAAAAAGCTCATCTGACCAAAGGTAATGAAACTTT
1 AAATTTAAAAAGCTCATCTAACCAAAGGTAATGAAACTTT
* * * *
16081433 AAATTTAAAAGGCTTC-TTTGACCTAAA-GTAATAAAACTTT
1 AAATTTAAAAAGC-TCATCTAACC-AAAGGTAATGAAACTTT
16081473 AAAT
1 AAAT
16081477 GGCTCATTAA
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
40 64 0.84
41 12 0.16
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (40 bp):
AAATTTAAAAAGCTCATCTAACCAAAGGTAATGAAACTTT
Found at i:16081845 original size:39 final size:39
Alignment explanation
Indices: 16081801--16081900 Score: 103
Period size: 41 Copynumber: 2.5 Consensus size: 39
16081791 AACCAGAAGT
*
16081801 AATGAAACTTTAAATTAAAAGG-TTAATATGACTAGAGAC
1 AATGAAACTTTAAATTAAAAGGCTT-ATATGACCAGAGAC
* * * * *
16081840 TATGAAACTTTCAATTTAAAAAGGCTTATCTTACCAGAGTC
1 AATGAAACTTT-AAATT-AAAAGGCTTATATGACCAGAGAC
*
16081881 AATAAAACTTTAAATTAAAA
1 AATGAAACTTTAAATTAAAA
16081901 ATTTGAAAAG
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
39 14 0.29
40 8 0.16
41 25 0.51
42 2 0.04
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (39 bp):
AATGAAACTTTAAATTAAAAGGCTTATATGACCAGAGAC
Found at i:16086221 original size:19 final size:19
Alignment explanation
Indices: 16086199--16086241 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
16086189 GAAAGTGAAT
*
16086199 GAAATGGATGA-AATATAGA
1 GAAATGGATAATAATAT-GA
*
16086218 GAAATGTATAATAATATGA
1 GAAATGGATAATAATATGA
16086237 GAAAT
1 GAAAT
16086242 TAAAATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (19 bp):
GAAATGGATAATAATATGA
Found at i:16093847 original size:12 final size:12
Alignment explanation
Indices: 16093825--16093850 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16093815 TTATTATTAA
16093825 TTTTTATATTGT
1 TTTTTATATTGT
16093837 TTTTTATATTGT
1 TTTTTATATTGT
16093849 TT
1 TT
16093851 AAATAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (12 bp):
TTTTTATATTGT
Found at i:16094347 original size:22 final size:21
Alignment explanation
Indices: 16094317--16094371 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
16094307 GTATCATAAA
16094317 AAATAAAAACAAACAAAAAAT
1 AAATAAAAACAAACAAAAAAT
*
16094338 AACATAAAAATC-AACACAAAAT
1 AA-ATAAAAA-CAAACAAAAAAT
16094360 AAAT-AAAACAAA
1 AAATAAAAACAAA
16094372 AATCAAAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 1 0.03
20 6 0.20
21 4 0.13
22 18 0.60
23 1 0.03
ACGTcount: A:0.76, C:0.13, G:0.00, T:0.11
Consensus pattern (21 bp):
AAATAAAAACAAACAAAAAAT
Found at i:16094369 original size:28 final size:25
Alignment explanation
Indices: 16094312--16094391 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 25
16094302 CAATAGTATC
*
16094312 ATAAAAAATAAAAA-CAAACAAAAA
1 ATAAAACATAAAAATCAAACAAAAA
16094336 AT--AACATAAAAATCAACACAAAATAA
1 ATAAAACATAAAAATCAA-AC-AAA-AA
*
16094362 ATAAAAC--AAAAATCAAAACAGAAA
1 ATAAAACATAAAAATC-AAACAAAAA
16094386 ATAAAA
1 ATAAAA
16094392 AGAAAAAGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
22 9 0.19
23 3 0.06
24 12 0.26
25 5 0.11
26 13 0.28
27 2 0.04
28 3 0.06
ACGTcount: A:0.76, C:0.11, G:0.01, T:0.11
Consensus pattern (25 bp):
ATAAAACATAAAAATCAAACAAAAA
Found at i:16095366 original size:22 final size:24
Alignment explanation
Indices: 16095335--16095379 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
16095325 TTACTTTTTT
16095335 TTATTCATTTATTT-TAT-TATTA
1 TTATTCATTTATTTATATATATTA
*
16095357 TTATTTATTTATTTATATATATT
1 TTATTCATTTATTTATATATATT
16095380 TTTTGGACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 3 0.15
24 4 0.20
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (24 bp):
TTATTCATTTATTTATATATATTA
Found at i:16097046 original size:26 final size:25
Alignment explanation
Indices: 16096999--16097059 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
16096989 TGTTTCGTGC
16096999 ATAATATTATGATAAATATGA-TAA
1 ATAATATTATGATAAATATGATTAA
16097023 TATAATATTATGAATAAGAT-TGATTAA
1 -ATAATATTATG-ATAA-ATATGATTAA
*
16097050 AGAATATTAT
1 ATAATATTAT
16097060 ATTATTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
25 11 0.34
26 16 0.50
27 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (25 bp):
ATAATATTATGATAAATATGATTAA
Found at i:16099493 original size:100 final size:97
Alignment explanation
Indices: 16099353--16099666 Score: 339
Period size: 101 Copynumber: 3.2 Consensus size: 97
16099343 TATATATAAA
* * *
16099353 ATTTATTTTAAGAAAATTCATTAA-ACCTTCCAATAGTTTGATAAGA-TCTAATTCAATATTTAA
1 ATTTTTTTTAA-AAAATTCATTAAGTCCTT-CAATATTTTGATAAGACT-TAATTCAATATTTAA
*
16099416 ATCCTTCAAAGTTTGGTAGGATTGAAAATTTTATT
63 ATCCTCCAAAGTTTGGTAGGATTGAAAATTTTATT
*
16099451 ATTCTTTTTTACAAAATATTCATTAAGTCCTTCAATATTTTGATAAGACTTAATTCAAAATTTAA
1 ATT-TTTTTTA-AAAA-ATTCATTAAGTCCTTCAATATTTTGATAAGACTTAATTCAATATTTAA
* ** * * *
16099516 ATCATCCATTTGTGTGGTAAGATTAAAAATTTTATT
63 ATCCTCCA-AAGTTTGGTAGGATTGAAAATTTTATT
* *
16099552 ATTATTATTTTTAAAAAATTCATTAAGTCCTCCAATAGTTTT-ACAAGACTTAATTCAATATTTA
1 A-T-TT-TTTTTAAAAAATTCATTAAGTCCTTCAATA-TTTTGATAAGACTTAATTCAATATTTA
* * *
16099616 AACCCTCCAATAGTTTGATAGGAATGAAAATTTTATT
62 AATCCTCCAA-AGTTTGGTAGGATTGAAAATTTTATT
*
16099653 -TTTTTTTCAAAAAA
1 ATTTTTTTTAAAAAA
16099667 ATTTATTATG
Statistics
Matches: 181, Mismatches: 24, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
97 10 0.06
98 5 0.03
99 10 0.06
100 45 0.25
101 94 0.52
102 10 0.06
103 7 0.04
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (97 bp):
ATTTTTTTTAAAAAATTCATTAAGTCCTTCAATATTTTGATAAGACTTAATTCAATATTTAAATC
CTCCAAAGTTTGGTAGGATTGAAAATTTTATT
Found at i:16107863 original size:72 final size:73
Alignment explanation
Indices: 16107766--16107912 Score: 190
Period size: 73 Copynumber: 2.0 Consensus size: 73
16107756 AGCAACAAAG
* * * * *
16107766 AAAAGGAAATTATTAAGCAAAAAAGTCTGTCAAG-GAACAATAAAAGCGAAAAAAAAGTTTGTCA
1 AAAAAGAAATTATTAAGAAAAAAAGTCTATCAAGCAAAAAATAAAAGCGAAAAAAAAGTTTGTCA
16107830 AGAGAAAAA
66 AGA-AAAAA
* * * *
16107839 AAAAAGAAATTA-TAATAAAAAAAGTCTATCAAGCAAAAAATAAAAGTGAAAGAAGAGTTTGTCA
1 AAAAAGAAATTATTAAGAAAAAAAGTCTATCAAGCAAAAAATAAAAGCGAAAAAAAAGTTTGTCA
16107903 AGAAAAAA
66 AGAAAAAA
16107911 AA
1 AA
16107913 TTAAAAAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 25 0.39
73 39 0.61
ACGTcount: A:0.61, C:0.07, G:0.16, T:0.17
Consensus pattern (73 bp):
AAAAAGAAATTATTAAGAAAAAAAGTCTATCAAGCAAAAAATAAAAGCGAAAAAAAAGTTTGTCA
AGAAAAAA
Found at i:16107934 original size:73 final size:71
Alignment explanation
Indices: 16107784--16107935 Score: 171
Period size: 73 Copynumber: 2.1 Consensus size: 71
16107774 ATTATTAAGC
* * * * *
16107784 AAAAAAGTCTGTCAAGGAACAATAAAAGCGAAAAAAAAGTTTGTCAAGAGAAAAAAAAAAGAAAT
1 AAAAAAGTCTATCAAGAAAAAATAAAAGCGAAAAAAAAGTTTGTCAAGAGAAAAAAAAAAAAAAA
*
16107849 TATAAT
66 TACAAT
* * *
16107855 AAAAAAAGTCTATCAAGCAAAAAATAAAAGTGAAAGAAGAGTTTGTCAAGA-AAAAAAATTAAAA
1 -AAAAAAGTCTATCAAG-AAAAAATAAAAGCGAAAAAAAAGTTTGTCAAGAGAAAAAAA--AAAA
16107919 AAAATAGCAAT
62 AAAATA-CAAT
16107930 AAAAAA
1 AAAAAA
16107936 AAGGAATTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
72 22 0.33
73 28 0.42
74 14 0.21
75 3 0.04
ACGTcount: A:0.63, C:0.07, G:0.14, T:0.16
Consensus pattern (71 bp):
AAAAAAGTCTATCAAGAAAAAATAAAAGCGAAAAAAAAGTTTGTCAAGAGAAAAAAAAAAAAAAA
TACAAT
Found at i:16108226 original size:65 final size:64
Alignment explanation
Indices: 16108153--16108329 Score: 211
Period size: 65 Copynumber: 2.8 Consensus size: 64
16108143 TATAACTAAC
* *
16108153 ATTGAGATTTTAAACCCAGTTAAGTTGGCAGTATATGAGATTTCTTTAAGCCCAGTATAGTTAGT
1 ATTGAGATTTTAAACCCAGTTAAGTTGGCATTAGATGAGATTT-TTTAAGCCCAGTATAGTTAGT
* * * ** *
16108218 ATTGAGATTTTAAGCCTAGTTAAGTTAGCATTAGATGAGATTTTTTAAGTTCAGTCTAGTTAGT
1 ATTGAGATTTTAAACCCAGTTAAGTTGGCATTAGATGAGATTTTTTAAGCCCAGTATAGTTAGT
* *
16108282 ACTAAGATTTT-AACCC---T-AGTTGGCATTAGATGAGATTTTTTCAAGCCC
1 ATTGAGATTTTAAACCCAGTTAAGTTGGCATTAGATGAGATTTTTT-AAGCCC
16108330 CATCTAGTTG
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
59 23 0.24
60 5 0.05
63 3 0.03
64 27 0.28
65 38 0.40
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.38
Consensus pattern (64 bp):
ATTGAGATTTTAAACCCAGTTAAGTTGGCATTAGATGAGATTTTTTAAGCCCAGTATAGTTAGT
Found at i:16108243 original size:29 final size:29
Alignment explanation
Indices: 16108103--16108253 Score: 92
Period size: 29 Copynumber: 5.0 Consensus size: 29
16108093 AGATGAAAGA
* * * *
16108103 TTTAAGCCCAATTTAGCTAGCACTGAGAT
1 TTTAAGCCCAGTTAAGTTAGCATTGAGAT
* * * *
16108132 TTTAAGCCTAATATAA-CTAACATTGAGAT
1 TTTAAGCCCAGT-TAAGTTAGCATTGAGAT
* *
16108161 TTTAAACCCAGTTAAGTTGGCAGTATATGAGATTT
1 TTTAAGCCCAGTTAAGTT---AGCAT-TGAGA--T
*
16108196 CTTTAAGCCCAG-TATAGTTAGTATTGAGAT
1 -TTTAAGCCCAGTTA-AGTTAGCATTGAGAT
*
16108226 TTTAAGCCTAGTTAAGTTAGCATT-AGAT
1 TTTAAGCCCAGTTAAGTTAGCATTGAGAT
16108254 GAGATTTTTT
Statistics
Matches: 98, Mismatches: 13, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
28 7 0.07
29 51 0.52
30 5 0.05
32 8 0.08
33 10 0.10
35 3 0.03
36 14 0.14
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (29 bp):
TTTAAGCCCAGTTAAGTTAGCATTGAGAT
Found at i:16108300 original size:64 final size:63
Alignment explanation
Indices: 16108157--16108329 Score: 194
Period size: 64 Copynumber: 2.7 Consensus size: 63
16108147 ACTAACATTG
* * *
16108157 AGATTTTAAACCC-AGTTAAGTTGGCAGTATATGAGATTTCTTTAAGCCCAGTATAGTTAGTATT
1 AGATTTT-AACCCTAGTTAAGTT-GCATTAGATGAGATTT-TTTAAGCCCAGTATAGTTAGTACT
*
16108221 G
63 A
* ** *
16108222 AGATTTTAAGCCTAGTTAAGTTAGCATTAGATGAGATTTTTTAAGTTCAGTCTAGTTAGTACTA
1 AGATTTTAACCCTAGTTAAGTT-GCATTAGATGAGATTTTTTAAGCCCAGTATAGTTAGTACTA
16108286 AGATTTTAACCCTAGTT--G--GCATTAGATGAGATTTTTTCAAGCCC
1 AGATTTTAACCCTAGTTAAGTTGCATTAGATGAGATTTTTT-AAGCCC
16108330 CATCTAGTTG
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
59 19 0.20
60 4 0.04
62 1 0.01
64 40 0.43
65 30 0.32
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (63 bp):
AGATTTTAACCCTAGTTAAGTTGCATTAGATGAGATTTTTTAAGCCCAGTATAGTTAGTACTA
Done.