Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019167833.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_105, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 85413
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43


File 3 of 3

Found at i:84562 original size:11 final size:11

Alignment explanation


    Indices: 84528--84565  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

      84518 AATTCAATAT

                       
      84528 TATTATTAAAA
          1 TATTATTAAAA

                 *      
      84539 TA-TAATAATAA
          1 TATTATTAA-AA

                       
      84550 TATTATTAAAA
          1 TATTATTAAAA

                 
      84561 TATTA
          1 TATTA

      84566 ATTTAAATAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 4
        0.79            0.07        0.14

Matches are distributed among these distances:
  10    5  0.22
  11   13  0.57
  12    5  0.22

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (11 bp):   
TATTATTAAAA

Done.